Psyllid ID: psy8318

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
MPMVQWQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKDCGIREEVKL
Secondary Structure (PSIPRED)
ccccHHHHcccEEEEEccccccHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHccHHHHHHHHccccccccccHHHHHccccccccccccccHHHHHHcccccccEEEEEEEEccEEEEEEEcccccccccccccccccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHcccccccccEEEEEccccHHHHHHccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHcEEEEEEEccccccHHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHcHHHHHHHHccccccccccHHHHHHcHHHHHcccccccHHHHHHccccccccEEEEEEEccEEEEEEEcccccccHHHHHHHHccccEEEEEEEHHHHHcEcccccccEHHHHHHHHHHHHHccHHHcccEEEEEEEcHHHHHHHHHHccHHHccccccccccEEEEEcccccHHHHHHHHHHHHHHHHcccccccccEEEEcc
Coil and Loop (DISEMBL)
MPMVQWQEREVKLLLLGAGESGKSTIVKQMKIIhetgyskeeceqyrpvvySNSIQSLMAIIRAMGQLkidfgdhknadCARQFFTLAsaaeegdltPDLVILMKRLwsdqgvqhcfhrsreyqlndsAAYYLNAldrisqpnyiptqqDVLRTRVKTTGIIETHFTFKDLHFKmfdvggqrserKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIcnskwfmdTSIILFLNkndlfqekitkspltvcfpeytdqkeiythftcatdtsniqFVFDAVTDVIIKANlkdcgireevkl
Flexible Loop (DISEMBL)
MPMVQWQEREVKLLllgagesgkstiVKQMKIIHEtgyskeeceqyRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIEthftfkdlhfKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKItkspltvcfPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKanlkdcgireevkl
Low Complexity Region (SEG)
MPMVQWQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKDCGIREEVKL
Disordered region (IsUnstruct)
********REVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKDCGI******
Disordered Region (DISOPRED)
*********EVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKDCGIREEVK*
Disordered Region (DISEMBL)
********REVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKDCGIREEVKL
Disordered Region (DISPRO)
*PMVQWQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKDCGIREEVKL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPMVQWQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKDCGIREEVKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
UNIPROTKB|A0EJE8	353	A0EJE8 "G(Alpha)i" [Anopheles	0.827	0.733	0.868	7.2e-139
UNIPROTKB|Q6QM17	354	Q6QM17 "Guanine nucleotide-bin	0.830	0.734	0.830	1.2e-134
UNIPROTKB|P63097	354	GNAI1 "Guanine nucleotide-bind	0.884	0.782	0.789	6.7e-134
UNIPROTKB|P63096	354	GNAI1 "Guanine nucleotide-bind	0.884	0.782	0.789	6.7e-134
MGI|MGI:95771	354	Gnai1 "guanine nucleotide bind	0.884	0.782	0.789	6.7e-134
UNIPROTKB|G1SEJ8	354	GNAI1 "Uncharacterized protein	0.884	0.782	0.785	8.5e-134
RGD|2713	354	Gnai1 "guanine nucleotide bind	0.884	0.782	0.789	8.5e-134
UNIPROTKB|P10824	354	Gnai1 "Guanine nucleotide-bind	0.884	0.782	0.789	8.5e-134
UNIPROTKB|P38401	354	GNAI1 "Guanine nucleotide-bind	0.884	0.782	0.789	1.4e-133
UNIPROTKB|Q5RAD4	354	GNAI1 "Guanine nucleotide-bind	0.884	0.782	0.785	2.3e-133

UNIPROTKB|A0EJE8 A0EJE8 "G(Alpha)i" [Anopheles gambiae (taxid:7165)]

 Score = 1192 (424.7 bits), Expect = 7.2e-139, Sum P(2) = 7.2e-139
 Identities = 225/259 (86%), Positives = 241/259 (93%)

Query:    10 EVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLK 69
             EVKLLLLGAGESGKSTIVKQMKIIHETGYS+EECEQYRPVVYSN+IQ LMAIIRAMGQL+
Sbjct:    32 EVKLLLLGAGESGKSTIVKQMKIIHETGYSQEECEQYRPVVYSNTIQGLMAIIRAMGQLR 91

Query:    70 IDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSA 129
             IDF D    D ARQFFT ASA EEG+LTP+LV LMK+LW+D GVQ CF RSREYQLNDSA
Sbjct:    92 IDFADPSKTDIARQFFTYASATEEGELTPELVSLMKKLWTDPGVQQCFARSREYQLNDSA 151

Query:   130 AYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWI 189
             AYYLN+LDRISQP YIPTQQDVLRTRVKTTGI+ETHF+FK +HFKMFDVGGQRSERKKWI
Sbjct:   152 AYYLNSLDRISQPAYIPTQQDVLRTRVKTTGIVETHFSFKSIHFKMFDVGGQRSERKKWI 211

Query:   190 HCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND 249
             HCFEGVTAIIFCVALSGYD VLAEDEEMNRMIESMKLFDSICNSKWF++TSIILFLNK D
Sbjct:   212 HCFEGVTAIIFCVALSGYDLVLAEDEEMNRMIESMKLFDSICNSKWFVETSIILFLNKKD 271

Query:   250 LFQEKITKSPLTVCFPEYT 268
             LF+EKI +SPLT+CFPEYT
Sbjct:   272 LFEEKIVRSPLTICFPEYT 290

GO:0001664 "G-protein coupled receptor binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=ISS

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=ISS

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=ISS

UNIPROTKB|Q6QM17 Q6QM17 "Guanine nucleotide-binding protein G(I) alpha subunit" [Strongylocentrotus purpuratus (taxid:7668)]

 Score = 1145 (408.1 bits), Expect = 1.2e-134, Sum P(2) = 1.2e-134
 Identities = 216/260 (83%), Positives = 236/260 (90%)

Query:     9 REVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQL 68
             REVKLLLLGAGESGKSTIVKQMKIIHE GYS+E+C QY+PVVYSN+IQS++AIIRAMG L
Sbjct:    32 REVKLLLLGAGESGKSTIVKQMKIIHEEGYSEEDCRQYKPVVYSNTIQSMIAIIRAMGSL 91

Query:    69 KIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDS 128
             KIDFGD + AD ARQ F LA  AEEG+L+ +L  +MKRLW+D GVQ CF RSREYQLNDS
Sbjct:    92 KIDFGDTERADDARQLFALAGQAEEGELSTELAAVMKRLWADSGVQACFSRSREYQLNDS 151

Query:   129 AAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKW 188
             A+YYLNALDR+S P YIPTQQDVLRTRVKTTGI+ETHFTFK+LHFKMFDVGGQRSERKKW
Sbjct:   152 ASYYLNALDRLSAPGYIPTQQDVLRTRVKTTGIVETHFTFKELHFKMFDVGGQRSERKKW 211

Query:   189 IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248
             IHCFEGVTAIIFCVALS YD VLAEDEEMNRM ESMKLFDSICN+KWF +TSIILFLNK 
Sbjct:   212 IHCFEGVTAIIFCVALSAYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKK 271

Query:   249 DLFQEKITKSPLTVCFPEYT 268
             DLF+EKI KSPLT+CFPEYT
Sbjct:   272 DLFEEKIQKSPLTICFPEYT 291

GO:0001664 "G-protein coupled receptor binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=ISS

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=ISS

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=ISS

UNIPROTKB|P63097 GNAI1 "Guanine nucleotide-binding protein G(i) subunit alpha-1" [Bos taurus (taxid:9913)]

 Score = 1146 (408.5 bits), Expect = 6.7e-134, Sum P(2) = 6.7e-134
 Identities = 221/280 (78%), Positives = 242/280 (86%)

Query:     9 REVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQL 68
             REVKLLLLGAGESGKSTIVKQMKIIHE GYS+EEC+QY+ VVYSN+IQS++AIIRAMG+L
Sbjct:    32 REVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRL 91

Query:    69 KIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDS 128
             KIDFGD   AD ARQ F LA AAEEG +T +L  ++KRLW D GVQ CF+RSREYQLNDS
Sbjct:    92 KIDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDS 151

Query:   129 AAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKW 188
             AAYYLN LDRI+QPNYIPTQQDVLRTRVKTTGI+ETHFTFKDLHFKMFDVGGQRSERKKW
Sbjct:   152 AAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKW 211

Query:   189 IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248
             IHCFEGVTAIIFCVALS YD VLAEDEEMNRM ESMKLFDSICN+KWF DTSIILFLNK 
Sbjct:   212 IHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 271

Query:   249 DLFQEKITKSPLTVCFPEYTDQ---KEIYTHFTCATDTSN 285
             DLF+EKI KSPLT+C+PEY      +E   +  C  +  N
Sbjct:   272 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLN 311

GO:0005886 "plasma membrane" evidence=ISS

GO:0005813 "centrosome" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0030496 "midbody" evidence=ISS

GO:0051301 "cell division" evidence=ISS

GO:0031821 "G-protein coupled serotonin receptor binding" evidence=ISS

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=ISS

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=ISS

GO:0007193 "adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway" evidence=ISS

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0004871 "signal transducer activity" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|P63096 GNAI1 "Guanine nucleotide-binding protein G(i) subunit alpha-1" [Homo sapiens (taxid:9606)]

 Score = 1146 (408.5 bits), Expect = 6.7e-134, Sum P(2) = 6.7e-134
 Identities = 221/280 (78%), Positives = 242/280 (86%)

Query:     9 REVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQL 68
             REVKLLLLGAGESGKSTIVKQMKIIHE GYS+EEC+QY+ VVYSN+IQS++AIIRAMG+L
Sbjct:    32 REVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRL 91

Query:    69 KIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDS 128
             KIDFGD   AD ARQ F LA AAEEG +T +L  ++KRLW D GVQ CF+RSREYQLNDS
Sbjct:    92 KIDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDS 151

Query:   129 AAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKW 188
             AAYYLN LDRI+QPNYIPTQQDVLRTRVKTTGI+ETHFTFKDLHFKMFDVGGQRSERKKW
Sbjct:   152 AAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKW 211

Query:   189 IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248
             IHCFEGVTAIIFCVALS YD VLAEDEEMNRM ESMKLFDSICN+KWF DTSIILFLNK 
Sbjct:   212 IHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 271

Query:   249 DLFQEKITKSPLTVCFPEYTDQ---KEIYTHFTCATDTSN 285
             DLF+EKI KSPLT+C+PEY      +E   +  C  +  N
Sbjct:   272 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLN 311

GO:0007049 "cell cycle" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003924 "GTPase activity" evidence=RCA;IBA;TAS

GO:0004871 "signal transducer activity" evidence=IBA

GO:0005834 "heterotrimeric G-protein complex" evidence=IBA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IBA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IBA

GO:0031821 "G-protein coupled serotonin receptor binding" evidence=IBA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030496 "midbody" evidence=IDA

GO:0051301 "cell division" evidence=IMP

GO:0005813 "centrosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0007193 "adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0043434 "response to peptide hormone stimulus" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

MGI|MGI:95771 Gnai1 "guanine nucleotide binding protein (G protein), alpha inhibiting 1" [Mus musculus (taxid:10090)]

 Score = 1146 (408.5 bits), Expect = 6.7e-134, Sum P(2) = 6.7e-134
 Identities = 221/280 (78%), Positives = 242/280 (86%)

Query:     9 REVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQL 68
             REVKLLLLGAGESGKSTIVKQMKIIHE GYS+EEC+QY+ VVYSN+IQS++AIIRAMG+L
Sbjct:    32 REVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRL 91

Query:    69 KIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDS 128
             KIDFGD   AD ARQ F LA AAEEG +T +L  ++KRLW D GVQ CF+RSREYQLNDS
Sbjct:    92 KIDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDS 151

Query:   129 AAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKW 188
             AAYYLN LDRI+QPNYIPTQQDVLRTRVKTTGI+ETHFTFKDLHFKMFDVGGQRSERKKW
Sbjct:   152 AAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKW 211

Query:   189 IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248
             IHCFEGVTAIIFCVALS YD VLAEDEEMNRM ESMKLFDSICN+KWF DTSIILFLNK 
Sbjct:   212 IHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 271

Query:   249 DLFQEKITKSPLTVCFPEYTDQ---KEIYTHFTCATDTSN 285
             DLF+EKI KSPLT+C+PEY      +E   +  C  +  N
Sbjct:   272 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLN 311

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IBA;TAS

GO:0004871 "signal transducer activity" evidence=IBA

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005834 "heterotrimeric G-protein complex" evidence=IBA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006184 "GTP catabolic process" evidence=TAS

GO:0007049 "cell cycle" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO;TAS

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007193 "adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway" evidence=IBA

GO:0016020 "membrane" evidence=ISO

GO:0019001 "guanyl nucleotide binding" evidence=IEA

GO:0019003 "GDP binding" evidence=ISO

GO:0030496 "midbody" evidence=ISO

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IBA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IBA

GO:0031821 "G-protein coupled serotonin receptor binding" evidence=ISO;IBA

GO:0032794 "GTPase activating protein binding" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045121 "membrane raft" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0050805 "negative regulation of synaptic transmission" evidence=ISO

GO:0051301 "cell division" evidence=ISO

UNIPROTKB|G1SEJ8 GNAI1 "Uncharacterized protein" [Oryctolagus cuniculus (taxid:9986)]

 Score = 1145 (408.1 bits), Expect = 8.5e-134, Sum P(2) = 8.5e-134
 Identities = 220/280 (78%), Positives = 242/280 (86%)

Query:     9 REVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQL 68
             REVKLLLLGAGESGKSTIVKQMKIIHE GYS+EEC+QY+ VVYSN+IQS++AIIRAMG+L
Sbjct:    32 REVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRL 91

Query:    69 KIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDS 128
             K+DFGD   AD ARQ F LA AAEEG +T +L  ++KRLW D GVQ CF+RSREYQLNDS
Sbjct:    92 KVDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDS 151

Query:   129 AAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKW 188
             AAYYLN LDRI+QPNYIPTQQDVLRTRVKTTGI+ETHFTFKDLHFKMFDVGGQRSERKKW
Sbjct:   152 AAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKW 211

Query:   189 IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248
             IHCFEGVTAIIFCVALS YD VLAEDEEMNRM ESMKLFDSICN+KWF DTSIILFLNK 
Sbjct:   212 IHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 271

Query:   249 DLFQEKITKSPLTVCFPEYTDQ---KEIYTHFTCATDTSN 285
             DLF+EKI KSPLT+C+PEY      +E   +  C  +  N
Sbjct:   272 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLN 311

GO:0005525 "GTP binding" evidence=IMP

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IMP

GO:0043434 "response to peptide hormone stimulus" evidence=IMP

RGD|2713 Gnai1 "guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1" [Rattus norvegicus (taxid:10116)]

 Score = 1145 (408.1 bits), Expect = 8.5e-134, Sum P(2) = 8.5e-134
 Identities = 221/280 (78%), Positives = 242/280 (86%)

Query:     9 REVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQL 68
             REVKLLLLGAGESGKSTIVKQMKIIHE GYS+EEC+QY+ VVYSN+IQS++AIIRAMG+L
Sbjct:    32 REVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRL 91

Query:    69 KIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDS 128
             KIDFGD   AD ARQ F LA AAEEG +T +L  ++KRLW D GVQ CF+RSREYQLNDS
Sbjct:    92 KIDFGDAARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDS 151

Query:   129 AAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKW 188
             AAYYLN LDRI+QPNYIPTQQDVLRTRVKTTGI+ETHFTFKDLHFKMFDVGGQRSERKKW
Sbjct:   152 AAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKW 211

Query:   189 IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248
             IHCFEGVTAIIFCVALS YD VLAEDEEMNRM ESMKLFDSICN+KWF DTSIILFLNK 
Sbjct:   212 IHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 271

Query:   249 DLFQEKITKSPLTVCFPEYTDQ---KEIYTHFTCATDTSN 285
             DLF+EKI KSPLT+C+PEY      +E   +  C  +  N
Sbjct:   272 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLN 311

GO:0003924 "GTPase activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA;IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005813 "centrosome" evidence=ISO;IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=IBA;TAS

GO:0005886 "plasma membrane" evidence=ISO;IDA;TAS

GO:0007049 "cell cycle" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IMP

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007193 "adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway" evidence=IBA

GO:0016020 "membrane" evidence=IDA

GO:0019003 "GDP binding" evidence=IDA

GO:0030496 "midbody" evidence=ISO;ISS

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IBA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA;IBA

GO:0031821 "G-protein coupled serotonin receptor binding" evidence=IPI

GO:0032794 "GTPase activating protein binding" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0045121 "membrane raft" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050805 "negative regulation of synaptic transmission" evidence=IMP

GO:0051301 "cell division" evidence=ISO;ISS

UNIPROTKB|P10824 Gnai1 "Guanine nucleotide-binding protein G(i) subunit alpha-1" [Rattus norvegicus (taxid:10116)]

 Score = 1145 (408.1 bits), Expect = 8.5e-134, Sum P(2) = 8.5e-134
 Identities = 221/280 (78%), Positives = 242/280 (86%)

Query:     9 REVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQL 68
             REVKLLLLGAGESGKSTIVKQMKIIHE GYS+EEC+QY+ VVYSN+IQS++AIIRAMG+L
Sbjct:    32 REVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRL 91

Query:    69 KIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDS 128
             KIDFGD   AD ARQ F LA AAEEG +T +L  ++KRLW D GVQ CF+RSREYQLNDS
Sbjct:    92 KIDFGDAARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDS 151

Query:   129 AAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKW 188
             AAYYLN LDRI+QPNYIPTQQDVLRTRVKTTGI+ETHFTFKDLHFKMFDVGGQRSERKKW
Sbjct:   152 AAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKW 211

Query:   189 IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248
             IHCFEGVTAIIFCVALS YD VLAEDEEMNRM ESMKLFDSICN+KWF DTSIILFLNK 
Sbjct:   212 IHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 271

Query:   249 DLFQEKITKSPLTVCFPEYTDQ---KEIYTHFTCATDTSN 285
             DLF+EKI KSPLT+C+PEY      +E   +  C  +  N
Sbjct:   272 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLN 311

GO:0003924 "GTPase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|P38401 GNAI1 "Guanine nucleotide-binding protein G(i) subunit alpha-1" [Cavia porcellus (taxid:10141)]

 Score = 1143 (407.4 bits), Expect = 1.4e-133, Sum P(2) = 1.4e-133
 Identities = 221/280 (78%), Positives = 242/280 (86%)

Query:     9 REVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQL 68
             REVKLLLLGAGESGKSTIVKQMKIIHE GYS+EEC+QY+ VVYSN+IQS++AIIRAMG+L
Sbjct:    32 REVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRL 91

Query:    69 KIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDS 128
             KIDFGD   AD ARQ F LA AAEEG +T +L  ++KRLW D GVQ CF+RSREYQLNDS
Sbjct:    92 KIDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDS 151

Query:   129 AAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKW 188
             AAYYLN LDRI+Q NYIPTQQDVLRTRVKTTGI+ETHFTFKDLHFKMFDVGGQRSERKKW
Sbjct:   152 AAYYLNDLDRIAQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKW 211

Query:   189 IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248
             IHCFEGVTAIIFCVALS YD VLAEDEEMNRM ESMKLFDSICN+KWF DTSIILFLNK 
Sbjct:   212 IHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 271

Query:   249 DLFQEKITKSPLTVCFPEYTDQ---KEIYTHFTCATDTSN 285
             DLF+EKI KSPLT+C+PEYT     +E   +  C  +  N
Sbjct:   272 DLFEEKIKKSPLTICYPEYTGSNTYEEAAAYIQCQFEDLN 311

GO:0005737 "cytoplasm" evidence=ISS

GO:0005813 "centrosome" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0030496 "midbody" evidence=ISS

GO:0051301 "cell division" evidence=ISS

UNIPROTKB|Q5RAD4 GNAI1 "Guanine nucleotide-binding protein G(i) subunit alpha-1" [Pongo abelii (taxid:9601)]

 Score = 1141 (406.7 bits), Expect = 2.3e-133, Sum P(2) = 2.3e-133
 Identities = 220/280 (78%), Positives = 241/280 (86%)

Query:     9 REVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQL 68
             REVKLLLLGAGESGKSTIVKQMKIIHE GYS+EEC+QY+ VVYSN+IQS++AIIRAMG+L
Sbjct:    32 REVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRL 91

Query:    69 KIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDS 128
             KIDFGD   AD ARQ F LA AAEEG +T +L  ++KRLW D GVQ CF+RSREYQLNDS
Sbjct:    92 KIDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDS 151

Query:   129 AAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKW 188
             AAYYLN LDRI+QPNYIPTQQDVLRTRVKTTGI+ETHFTFKDLHFKMFDVGGQRSERKKW
Sbjct:   152 AAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKW 211

Query:   189 IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN 248
             IHCFEGVTAIIFCVALS YD VLAEDEEMNRM ESMKLFDS CN+KWF DTSIILFLNK 
Sbjct:   212 IHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSTCNNKWFTDTSIILFLNKK 271

Query:   249 DLFQEKITKSPLTVCFPEYTDQ---KEIYTHFTCATDTSN 285
             DLF+EKI KSPLT+C+PEY      +E   +  C  +  N
Sbjct:   272 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLN 311

GO:0005737 "cytoplasm" evidence=ISS

GO:0005813 "centrosome" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0030496 "midbody" evidence=ISS

GO:0051301 "cell division" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	313
cd00066	315	cd00066, G-alpha, Alpha subunit of G proteins (gua	0.0
smart00275	342	smart00275, G_alpha, G protein alpha subunit	1e-170
pfam00503	329	pfam00503, G-alpha, G-protein alpha subunit	1e-157
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	1e-11
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	5e-10
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	4e-09
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	4e-09
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	9e-09
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	1e-08
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	1e-07
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	1e-06
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	4e-06
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	9e-06
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	5e-05
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	8e-05
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	2e-04
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	0.002
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	0.002
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	0.004

>gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide binding)

 Score =  525 bits (1356), Expect = 0.0
 Identities = 200/315 (63%), Positives = 238/315 (75%), Gaps = 23/315 (7%)

Query: 11  VKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKI 70
           VKLLLLGAGESGKSTI+KQMKI+H  G+S EE  ++RPV+YSN +QS+ A++RAM  L I
Sbjct: 1   VKLLLLGAGESGKSTILKQMKILHGNGFSDEERREFRPVIYSNILQSMKALLRAMETLNI 60

Query: 71  DFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAA 130
            +GD +N   A++  +LA  AEEG L P+L   +KRLW D G+Q C+ R  EYQLNDSA 
Sbjct: 61  PYGDPENEKDAKKILSLAPRAEEGPLPPELAEAIKRLWKDPGIQACYDRRNEYQLNDSAK 120

Query: 131 YYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIH 190
           Y+L+ LDRIS P+YIPT+QD+LR+RVKTTGIIET F+ K+L F+MFDVGGQRSERKKWIH
Sbjct: 121 YFLDNLDRISDPDYIPTEQDILRSRVKTTGIIETDFSIKNLKFRMFDVGGQRSERKKWIH 180

Query: 191 CFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250
           CFE VTAIIF VALS YD VL EDE +NRM ES+KLFDSICNS+WF +TSIILFLNK DL
Sbjct: 181 CFEDVTAIIFVVALSEYDQVLVEDESVNRMQESLKLFDSICNSRWFANTSIILFLNKKDL 240

Query: 251 FQEKITKSPLTVCFPEYT-----------------------DQKEIYTHFTCATDTSNIQ 287
           F+EKI KSPLT  FP+YT                         KEIY HFTCATDT NI+
Sbjct: 241 FEEKIKKSPLTDYFPDYTGPPNDYEEAAKYIKKKFLDLNRNPNKEIYPHFTCATDTENIR 300

Query: 288 FVFDAVTDVIIKANL 302
           FVFDAV D+I++ NL
Sbjct: 301 FVFDAVKDIILQNNL 315

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 315

>gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit

 Score =  476 bits (1227), Expect = e-170
 Identities = 180/326 (55%), Positives = 227/326 (69%), Gaps = 27/326 (8%)

Query: 7   QEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMG 66
           ++REVKLLLLGAGESGKSTI+KQM+I+H  G+S+EE  +YRP++YSN ++S+ A++ AM 
Sbjct: 18  KKREVKLLLLGAGESGKSTILKQMRILHGDGFSQEERREYRPLIYSNILESMKALVDAME 77

Query: 67  QLKIDFGD---HKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREY 123
           +L I F D     +     + F      E   L  ++   +K LW D+G+Q C+ R  E+
Sbjct: 78  ELNIPFEDPESILDIRIITEQFNKTDETENV-LPKEIAKAIKALWKDEGIQECYRRRNEF 136

Query: 124 QLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRS 183
           QLNDSA+Y+L+ +DRI  P+Y+PT+QD+LR+RV TTGI ET F  K L F+MFDVGGQRS
Sbjct: 137 QLNDSASYFLDNIDRIGDPDYVPTEQDILRSRVPTTGIQETAFIVKKLFFRMFDVGGQRS 196

Query: 184 ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIIL 243
           ERKKWIHCF+ VTAIIFCVALS YD VL EDE  NRM ES+ LF+SICNS+WF +TSIIL
Sbjct: 197 ERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIIL 256

Query: 244 FLNKNDLFQEKITKSPLTVCFPEYT-----------------------DQKEIYTHFTCA 280
           FLNK DLF+EKI K PL   FP+Y                         +K IY HFTCA
Sbjct: 257 FLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCA 316

Query: 281 TDTSNIQFVFDAVTDVIIKANLKDCG 306
           TDT NI+ VFDAV D+I++ NLKD G
Sbjct: 317 TDTRNIRVVFDAVKDIILQRNLKDAG 342

Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342

>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit

 Score =  442 bits (1139), Expect = e-157
 Identities = 176/329 (53%), Positives = 231/329 (70%), Gaps = 29/329 (8%)

Query: 9   REVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQL 68
           RE+KLLLLGAGESGKSTI+KQMKI+H  G+S EE EQYR V+YSN I+SL  ++ A+  L
Sbjct: 1   REIKLLLLGAGESGKSTILKQMKILHGGGFSDEEREQYRAVIYSNIIRSLKTLLEALENL 60

Query: 69  KIDFGDHK--NADCARQFFTLAS---AAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREY 123
           +I+  + K  N + A++  ++       +E   + +L   +K LW+D G+Q  ++RS E+
Sbjct: 61  EIESSNSKPENEEIAKKLKSILDSLLDVDETRFSEELAEDIKELWNDPGIQEVYNRSNEF 120

Query: 124 QLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRS 183
           QL+DSA Y+L+ LDRI+ P+Y+PT QD+LR RVKTTGIIET F FK L F++FDVGGQRS
Sbjct: 121 QLSDSAKYFLDNLDRIASPDYVPTDQDILRARVKTTGIIETKFDFKGLKFRLFDVGGQRS 180

Query: 184 ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIIL 243
           ERKKWIHCFE VTAIIF V+LS YD VL ED+  NR+ ES+ LF+ ICNS WF +T IIL
Sbjct: 181 ERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDDSTNRLEESLNLFEEICNSPWFKNTPIIL 240

Query: 244 FLNKNDLFQEKITKSPLTVCFPEYT------------------------DQKEIYTHFTC 279
           FLNK DLF+EK+ K PL+  FPEY                          +++IYTHFT 
Sbjct: 241 FLNKKDLFEEKLKKGPLSDYFPEYEGDPNDYESASKYIRNKFLELNKNNSERKIYTHFTN 300

Query: 280 ATDTSNIQFVFDAVTDVIIKANLKDCGIR 308
           ATDT N++FVF+AV D+I++ NLK+ G+ 
Sbjct: 301 ATDTENVRFVFEAVKDIILQNNLKESGLL 329

G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 61.4 bits (150), Expect = 1e-11
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 11/89 (12%)

Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
           +ET   +K++ F ++DVGGQ   R  W H +E    +IF V     DS   E     R+ 
Sbjct: 35  VET-VEYKNVKFTVWDVGGQDKIRPLWKHYYENTDGLIFVV-----DSSDRE-----RIE 83

Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
           E+      + N +      +++  NK DL
Sbjct: 84  EAKNELHKLLNEEELKGAPLLILANKQDL 112

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 57.2 bits (139), Expect = 5e-10
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 11/89 (12%)

Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
           +ET  T+K++ F ++DVGGQ S R  W + F    A+IF V     DS   +     R+ 
Sbjct: 50  VET-VTYKNVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVV-----DSADRD-----RIE 98

Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
           E+ +   ++ N +   D  +++  NK DL
Sbjct: 99  EAKEELHALLNEEELADAPLLILANKQDL 127

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 55.0 bits (132), Expect = 4e-09
 Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 26/136 (19%)

Query: 154 TRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAE 213
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +  D V+  
Sbjct: 44  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103

Query: 214 DEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTD---- 269
            +E++RM+   +L D++          +++F NK DL        P  +   E TD    
Sbjct: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL--------PNAMNAAEITDKLGL 145

Query: 270 ----QKEIYTHFTCAT 281
               Q+  Y   TCAT
Sbjct: 146 HSLRQRHWYIQSTCAT 161

Length = 181

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 12/98 (12%)

Query: 154 TRVKTTGI-IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLA 212
           T + T G  +ET  T+K++ F ++DVGGQ   R  W H + G   +IF V     DS   
Sbjct: 36  TTIPTVGFNVET-VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV-----DS--- 86

Query: 213 EDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250
              + +R+ E+ +    I N +   D  +++F NK DL
Sbjct: 87  --ADRDRIDEARQELHRIINDREMRDALLLVFANKQDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 53.2 bits (128), Expect = 9e-09
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 28/137 (20%)

Query: 154 TRVKTTGI-IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLA 212
           T + T G  +ET   +K++ F ++DVGGQ   R  W H F+    +IF V  +  + +  
Sbjct: 27  TTIPTIGFNVET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGE 85

Query: 213 EDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTD--- 269
             EE+ RM+   +L D++          +++F NK DL        P  +   E TD   
Sbjct: 86  AREELQRMLNEDELRDAV----------LLVFANKQDL--------PNAMSAAEVTDKLG 127

Query: 270 -----QKEIYTHFTCAT 281
                 +  Y   TCAT
Sbjct: 128 LHSLRNRNWYIQATCAT 144

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 53.4 bits (128), Expect = 1e-08
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 10/97 (10%)

Query: 154 TRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAE 213
           T + T G      T+K++ F ++DVGGQ   R  W H +     +IF V  +  D +   
Sbjct: 40  TTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEA 99

Query: 214 DEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250
            EE++RM+   +L D++          I++F NK DL
Sbjct: 100 REELHRMLNEDELRDAV----------ILVFANKQDL 126

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 28/137 (20%)

Query: 154 TRVKTTGI-IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLA 212
           T + T G  +ET   +K+L F M+DVGGQ   R  W H ++    +IF V  +  + +  
Sbjct: 44  TTIPTIGFNVET-VEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGD 102

Query: 213 EDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTD--- 269
             EE+ RM+   +L D++          +++F NK DL        P  +   E T+   
Sbjct: 103 AREELERMLSEDELRDAV----------LLVFANKQDL--------PNAMSTTEVTEKLG 144

Query: 270 -----QKEIYTHFTCAT 281
                Q+  Y    CAT
Sbjct: 145 LHSVRQRNWYIQGCCAT 161

Length = 182

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 12/98 (12%)

Query: 154 TRVKTTGI-IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLA 212
           T + T G  +ET  T+K+L F+++D+GGQ S R  W   +    AII+ V  +  D +  
Sbjct: 26  TTIPTIGFNVET-VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGI 84

Query: 213 EDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250
              E++ M+E  +L D++          +++F NK D+
Sbjct: 85  SKSELHAMLEEEELKDAV----------LLVFANKQDM 112

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 45.8 bits (108), Expect = 4e-06
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 10/103 (9%)

Query: 148 QQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGY 207
           +QD     + T G       +K+L F ++DVGG+   R  W H +    A++F +  S  
Sbjct: 20  KQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVIDSSHR 79

Query: 208 DSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250
           D V     E+ +++   +L D++          +++F NK D+
Sbjct: 80  DRVSEAHSELAKLLTEKELRDAL----------LLIFANKQDV 112

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 10/77 (12%)

Query: 174 KMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS 233
           K++D+GGQ   R  W     GV AI++ V  +  + +     E++ ++E   L + I   
Sbjct: 47  KVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSL-EGI--- 102

Query: 234 KWFMDTSIILFLNKNDL 250
                  +++  NKNDL
Sbjct: 103 ------PLLVLGNKNDL 113

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 10/82 (12%)

Query: 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFD 228
           K L   ++DVGGQ   R  W    E    +++ V     DS    DE   R+ ES K   
Sbjct: 42  KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVV-----DS---SDEA--RLDESQKELK 91

Query: 229 SICNSKWFMDTSIILFLNKNDL 250
            I  ++      ++L  NK DL
Sbjct: 92  HILKNEHIKGVPVVLLANKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 10/85 (11%)

Query: 166 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK 225
             +K++ F M+D+GGQ S R  W   +    A+I  +  +  + +    EE+ +M+    
Sbjct: 54  IVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED 113

Query: 226 LFDSICNSKWFMDTSIILFLNKNDL 250
           L  ++          +++  NK DL
Sbjct: 114 LRKAV----------LLVLANKQDL 128

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 11/89 (12%)

Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
           I+T   +      ++DVGGQ+S R  W + FE   A+I+ V     DS      +  R+ 
Sbjct: 50  IKT-LEYNGYKLNIWDVGGQKSLRSYWRNYFESTDALIWVV-----DSS-----DRARLE 98

Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
           +  +    +   +     ++++F NK DL
Sbjct: 99  DCKRELQKLLVEERLAGATLLIFANKQDL 127

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 12/80 (15%)

Query: 171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI 230
           L F  +D+GGQ   R  W   +     +I+ +     DS    D E  R  ES   F+ +
Sbjct: 53  LMF--WDLGGQEELRSLWDKYYAESHGVIYVI-----DST---DRE--RFNESKSAFEKV 100

Query: 231 CNSKWFMDTSIILFLNKNDL 250
            N++      +++  NK DL
Sbjct: 101 INNEALEGVPLLVLANKQDL 120

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 22/145 (15%), Positives = 38/145 (26%), Gaps = 22/145 (15%)

Query: 154 TRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWI-----HCFEGVTAIIFCVALSGYD 208
           TR     + E       L     D  G                  G   I+  V  +  +
Sbjct: 32  TRDPDVYVKELDKGKVKLVL--VDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRE 89

Query: 209 SVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYT 268
           S       + R +    +              IIL  NK DL +E+  +  L +      
Sbjct: 90  SEEDAKLLILRRLRKEGI-------------PIILVGNKIDLLEEREVEELLRLEELAK- 135

Query: 269 DQKEIYTHFTCATDTSNIQFVFDAV 293
               +      A     +  +F+ +
Sbjct: 136 -ILGVPVFEVSAKTGEGVDELFEKL 159

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 23/114 (20%)

Query: 137 DRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVT 196
           DR++Q  ++PT                   T  ++ F  FD+GG    R+ W   F  V 
Sbjct: 42  DRLAQ--HVPTLHPT-----------SEELTIGNVKFTTFDLGGHEQARRVWKDYFPEVD 88

Query: 197 AIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250
            I+F V     D+    D E  R  ES +  DS+ N +   +  I++  NK D 
Sbjct: 89  GIVFLV-----DAA---DPE--RFQESKEELDSLLNDEELANVPILILGNKIDK 132

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
KOG0082|consensus	354		100.0
KOG0085|consensus	359		100.0
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	100.0
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	100.0
KOG0099|consensus	379		100.0
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	100.0
KOG0070|consensus	181		99.97
KOG0071|consensus	180		99.97
KOG0073|consensus	185		99.97
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.97
KOG0084|consensus	205		99.96
PLN00223	181	ADP-ribosylation factor; Provisional	99.96
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.95
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.95
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.94
PTZ00133	182	ADP-ribosylation factor; Provisional	99.94
KOG0092|consensus	200		99.94
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.94
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.94
KOG0078|consensus	207		99.94
KOG0075|consensus	186		99.94
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.94
KOG0076|consensus	197		99.93
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.93
KOG0094|consensus	221		99.93
KOG0074|consensus	185		99.93
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.93
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.92
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.92
KOG0394|consensus	210		99.92
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.92
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.92
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.92
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.92
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.92
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.92
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.92
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.91
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.91
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.91
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.91
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.91
KOG0086|consensus	214		99.91
KOG0072|consensus	182		99.91
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.91
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.91
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.91
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.91
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.91
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.91
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.91
KOG0087|consensus	222		99.91
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.91
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.91
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.91
PTZ00369	189	Ras-like protein; Provisional	99.91
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.91
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.9
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.9
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.9
KOG0079|consensus	198		99.9
KOG0098|consensus	216		99.9
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.9
KOG0080|consensus	209		99.9
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.9
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.9
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.9
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.9
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.9
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.9
KOG0093|consensus	193		99.9
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.9
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.89
KOG0095|consensus	213		99.89
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.89
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.89
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.89
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.89
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.89
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.89
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.89
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.89
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.89
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.89
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.88
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.88
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.88
PLN03110	216	Rab GTPase; Provisional	99.88
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.88
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.88
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.88
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.88
KOG0091|consensus	213		99.88
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.88
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.88
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.88
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.88
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.88
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.87
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.87
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.87
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.87
PLN03108	210	Rab family protein; Provisional	99.87
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.87
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.87
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.87
KOG0081|consensus	219		99.87
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.87
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.86
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.86
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.86
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.86
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.86
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.86
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.86
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.86
PLN03118	211	Rab family protein; Provisional	99.86
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.85
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.85
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.85
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.85
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.85
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.84
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.84
KOG0395|consensus	196		99.84
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.83
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.83
KOG0088|consensus	218		99.83
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.82
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.82
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.82
PTZ00099	176	rab6; Provisional	99.82
KOG0097|consensus	215		99.82
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.81
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.81
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.79
KOG0077|consensus	193		99.78
PLN00023	334	GTP-binding protein; Provisional	99.78
COG1100	219	GTPase SAR1 and related small G proteins [General	99.77
KOG0083|consensus	192		99.76
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.76
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.75
KOG4252|consensus	246		99.75
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.75
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.74
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.73
PRK04213	201	GTP-binding protein; Provisional	99.71
KOG0096|consensus	216		99.71
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.7
KOG0393|consensus	198		99.7
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.69
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.69
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.68
PRK12299	335	obgE GTPase CgtA; Reviewed	99.68
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.66
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.66
cd00881	189	GTP_translation_factor GTP translation factor fami	99.65
COG2229	187	Predicted GTPase [General function prediction only	99.64
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.64
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.64
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.64
PRK15494	339	era GTPase Era; Provisional	99.63
KOG3883|consensus	198		99.63
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.63
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.62
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.61
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.59
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.59
PRK03003	472	GTP-binding protein Der; Reviewed	99.59
PRK12296	500	obgE GTPase CgtA; Reviewed	99.58
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.58
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.58
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.58
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.57
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.57
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.57
PRK12297	424	obgE GTPase CgtA; Reviewed	99.56
KOG0090|consensus	238		99.56
PRK03003	472	GTP-binding protein Der; Reviewed	99.55
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.55
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.55
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.54
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.52
KOG1673|consensus	205		99.52
CHL00189	742	infB translation initiation factor 2; Provisional	99.51
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.51
PRK05306	787	infB translation initiation factor IF-2; Validated	99.51
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.5
PRK05433	600	GTP-binding protein LepA; Provisional	99.5
PRK11058	426	GTPase HflX; Provisional	99.5
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.5
PRK00093	435	GTP-binding protein Der; Reviewed	99.49
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.48
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.48
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.47
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.45
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.45
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.45
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.44
PRK00093	435	GTP-binding protein Der; Reviewed	99.44
KOG4423|consensus	229		99.44
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.44
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.43
PRK10218	607	GTP-binding protein; Provisional	99.43
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.43
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.43
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.43
PRK12317	425	elongation factor 1-alpha; Reviewed	99.43
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.42
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.42
PRK00089	292	era GTPase Era; Reviewed	99.42
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.41
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.41
PRK12298	390	obgE GTPase CgtA; Reviewed	99.41
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.4
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.38
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.38
KOG1532|consensus	366		99.37
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.36
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.35
PRK13768	253	GTPase; Provisional	99.29
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.28
PRK13351	687	elongation factor G; Reviewed	99.27
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.26
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.25
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.25
PRK04004	586	translation initiation factor IF-2; Validated	99.22
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.22
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.17
COG1159	298	Era GTPase [General function prediction only]	99.17
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.17
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.15
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.15
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.15
PRK12736	394	elongation factor Tu; Reviewed	99.14
COG0486	454	ThdF Predicted GTPase [General function prediction	99.13
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.12
PLN00043	447	elongation factor 1-alpha; Provisional	99.12
PRK12735	396	elongation factor Tu; Reviewed	99.12
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.11
PTZ00141	446	elongation factor 1- alpha; Provisional	99.08
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.08
PRK12740	668	elongation factor G; Reviewed	99.01
COG1084	346	Predicted GTPase [General function prediction only	99.0
COG1160	444	Predicted GTPases [General function prediction onl	99.0
KOG1489|consensus	366		99.0
CHL00071	409	tufA elongation factor Tu	99.0
PLN03126	478	Elongation factor Tu; Provisional	98.98
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.98
KOG0462|consensus	650		98.98
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.96
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.96
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.96
COG1160	444	Predicted GTPases [General function prediction onl	98.95
PRK00049	396	elongation factor Tu; Reviewed	98.95
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	98.93
PRK09866	741	hypothetical protein; Provisional	98.92
KOG1423|consensus	379		98.92
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	98.92
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.92
COG0536	369	Obg Predicted GTPase [General function prediction	98.91
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.9
KOG1490|consensus	620		98.88
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.84
PLN03127	447	Elongation factor Tu; Provisional	98.83
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.79
KOG3886|consensus	295		98.77
KOG1707|consensus	625		98.76
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.76
PRK12739	691	elongation factor G; Reviewed	98.75
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.71
PRK09602	396	translation-associated GTPase; Reviewed	98.69
COG2262	411	HflX GTPases [General function prediction only]	98.68
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.66
PRK00007	693	elongation factor G; Reviewed	98.66
KOG1191|consensus	531		98.65
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.58
PRK14845	1049	translation initiation factor IF-2; Provisional	98.51
KOG1145|consensus	683		98.5
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.49
PTZ00416	836	elongation factor 2; Provisional	98.49
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.49
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.47
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.44
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.4
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.39
PRK07560	731	elongation factor EF-2; Reviewed	98.39
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.34
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.33
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	98.33
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	98.29
COG1163	365	DRG Predicted GTPase [General function prediction	98.27
COG0218	200	Predicted GTPase [General function prediction only	98.24
KOG1144|consensus	1064		98.23
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.21
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	98.2
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.16
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.15
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.11
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.07
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	98.06
KOG0458|consensus	603		98.05
PRK00098	298	GTPase RsgA; Reviewed	98.03
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	97.99
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.95
KOG3887|consensus	347		97.94
PRK12289	352	GTPase RsgA; Reviewed	97.94
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.92
KOG3905|consensus	473		97.92
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.9
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	97.89
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	97.76
KOG0705|consensus	749		97.74
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	97.72
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.69
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.61
COG3596	296	Predicted GTPase [General function prediction only	97.6
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	97.57
PRK12288	347	GTPase RsgA; Reviewed	97.57
COG3276	447	SelB Selenocysteine-specific translation elongatio	97.56
PRK13796	365	GTPase YqeH; Provisional	97.53
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.48
COG0050	394	TufB GTPases - translation elongation factors [Tra	97.44
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	97.43
KOG0468|consensus	971		97.41
PTZ00258	390	GTP-binding protein; Provisional	97.37
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	97.33
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.31
KOG0461|consensus	522		97.28
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	97.23
KOG1143|consensus	591		97.23
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	97.21
PRK09601	364	GTP-binding protein YchF; Reviewed	97.16
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.14
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	97.11
PRK08118	167	topology modulation protein; Reviewed	97.09
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.08
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.07
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.02
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.01
KOG1533|consensus	290		97.0
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	97.0
PRK07261	171	topology modulation protein; Provisional	96.98
KOG1534|consensus	273		96.82
KOG1707|consensus	625		96.78
KOG2655|consensus	366		96.76
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.73
PRK09563	287	rbgA GTPase YlqF; Reviewed	96.73
PRK06217	183	hypothetical protein; Validated	96.67
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.59
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.57
PRK14974	336	cell division protein FtsY; Provisional	96.49
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.32
PRK03839	180	putative kinase; Provisional	96.31
KOG0463|consensus	641		96.3
PTZ00088	229	adenylate kinase 1; Provisional	96.29
PRK01889	356	GTPase RsgA; Reviewed	96.28
PF13555	62	AAA_29: P-loop containing region of AAA domain	96.27
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.25
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.23
COG4639	168	Predicted kinase [General function prediction only	96.22
PRK14532	188	adenylate kinase; Provisional	96.16
TIGR00959	428	ffh signal recognition particle protein. This mode	96.16
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.14
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.13
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.05
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.05
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	96.03
PRK13949	169	shikimate kinase; Provisional	96.02
PRK14530	215	adenylate kinase; Provisional	96.02
KOG0460|consensus	449		96.02
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	95.99
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	95.98
TIGR00064	272	ftsY signal recognition particle-docking protein F	95.97
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	95.94
PRK14531	183	adenylate kinase; Provisional	95.93
KOG0410|consensus	410		95.92
PRK08233	182	hypothetical protein; Provisional	95.91
PF00005	137	ABC_tran: ABC transporter This structure is on hol	95.9
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	95.89
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	95.88
PRK02496	184	adk adenylate kinase; Provisional	95.87
PRK10867	433	signal recognition particle protein; Provisional	95.87
PRK00625	173	shikimate kinase; Provisional	95.81
PRK00279	215	adk adenylate kinase; Reviewed	95.8
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	95.79
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	95.79
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	95.74
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	95.73
PLN02200	234	adenylate kinase family protein	95.71
smart00382	148	AAA ATPases associated with a variety of cellular	95.7
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	95.68
KOG0465|consensus	721		95.65
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	95.64
PRK05480	209	uridine/cytidine kinase; Provisional	95.64
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	95.63
COG4598	256	HisP ABC-type histidine transport system, ATPase c	95.59
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	95.59
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	95.57
PRK14529	223	adenylate kinase; Provisional	95.56
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	95.56
PF00004	132	AAA: ATPase family associated with various cellula	95.55
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	95.54
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	95.54
PRK00300	205	gmk guanylate kinase; Provisional	95.52
PF13173	128	AAA_14: AAA domain	95.52
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	95.51
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	95.51
PRK14528	186	adenylate kinase; Provisional	95.51
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	95.5
TIGR00235	207	udk uridine kinase. Model contains a number of lon	95.5
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	95.47
PRK06762	166	hypothetical protein; Provisional	95.47
PRK13695	174	putative NTPase; Provisional	95.45
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	95.43
PRK14526	211	adenylate kinase; Provisional	95.42
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	95.42
KOG3347|consensus	176		95.4
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	95.39
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	95.37
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	95.34
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	95.33
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	95.31
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	95.31
PF05729	166	NACHT: NACHT domain	95.29
PRK05057	172	aroK shikimate kinase I; Reviewed	95.28
PRK00131	175	aroK shikimate kinase; Reviewed	95.24
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	95.23
PRK14527	191	adenylate kinase; Provisional	95.21
PRK14738	206	gmk guanylate kinase; Provisional	95.2
PRK06547	172	hypothetical protein; Provisional	95.15
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	95.13
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	95.12
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	95.11
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	95.08
COG3638	258	ABC-type phosphate/phosphonate transport system, A	95.07
PLN02674	244	adenylate kinase	95.07
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	95.06
PRK13947	171	shikimate kinase; Provisional	95.06
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	95.05
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	95.05
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	95.04
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	95.02
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	95.01
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	95.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	95.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	95.0
PRK14737	186	gmk guanylate kinase; Provisional	94.99
PRK05541	176	adenylylsulfate kinase; Provisional	94.98
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	94.97
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	94.96
PRK08099	399	bifunctional DNA-binding transcriptional repressor	94.96
PHA02530	300	pseT polynucleotide kinase; Provisional	94.95
COG4525	259	TauB ABC-type taurine transport system, ATPase com	94.95
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	94.95
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	94.92
PRK04182	180	cytidylate kinase; Provisional	94.91
COG1162	301	Predicted GTPases [General function prediction onl	94.91
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	94.91
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	94.9
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	94.89
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	94.88
PLN02459	261	probable adenylate kinase	94.88
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	94.87
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	94.87
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	94.87
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	94.86
cd03269	210	ABC_putative_ATPase This subfamily is involved in	94.86
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	94.85
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	94.83
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	94.83
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	94.82
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	94.82
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	94.82
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	94.79
KOG0057|consensus	591		94.78
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	94.78
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	94.78
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	94.77
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	94.77
cd03216	163	ABC_Carb_Monos_I This family represents the domain	94.77
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	94.76
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	94.76
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	94.75
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	94.74
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	94.74
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	94.74
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	94.74
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	94.74
COG4559	259	ABC-type hemin transport system, ATPase component	94.73
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	94.72
PRK08356	195	hypothetical protein; Provisional	94.72
PRK09825	176	idnK D-gluconate kinase; Provisional	94.71
PF13479	213	AAA_24: AAA domain	94.7
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	94.7
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	94.68
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	94.68
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	94.67
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	94.67
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	94.66

>KOG0082|consensus

Probab=100.00  E-value=3.9e-78  Score=539.28  Aligned_cols=304  Identities=65%  Similarity=1.085  Sum_probs=292.2

Q ss_pred             hhhhccceEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHhHHHHH
Q psy8318           5 QWQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQF   84 (313)
Q Consensus         5 ~~~~~~~killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~~~~~~~~~~~i   84 (313)
                      ++..+.+|+||||+|+|||||++||||++|..||+.+|+..|++.||.|+++++..|++|+..+++++.+|..+..+..+
T Consensus        28 ~~~~~~iKlLLLGageSGKSTI~KQmkilh~~gfs~ee~~~~r~~I~~N~~~~~~~ll~a~~~~~i~~~~~~~~~d~~~~  107 (354)
T KOG0082|consen   28 KKEKKIIKLLLLGAGESGKSTIVKQMKILHGDGFSEEELLEYRPVIYSNIIQSLKALLRAMETLGINLDDPERENDAQKL  107 (354)
T ss_pred             HhhhhheeeeeecCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999988888888


Q ss_pred             HhhhcccCC-CCCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCccccccccceeeeecceeE
Q psy8318          85 FTLASAAEE-GDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIE  163 (313)
Q Consensus        85 ~~~~~~~~~-~~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~~T~g~~~  163 (313)
                      ......... +.+++++++.|+.||+||+||.||.|+++++++|++.||+++++||.+|+|.||++||+++|.||+|+.+
T Consensus       108 ~~~~~~~~~~~~~~~e~~~~i~~lW~d~~Iq~~~~r~~e~~l~Dsa~Yfl~~l~rI~~~~Y~PT~~DIL~~R~~T~GI~e  187 (354)
T KOG0082|consen  108 TLLADAAEELGVFSPELAEAIKELWKDPGIQACYERRREFQLNDSAKYFLENLDRISSPDYVPTEQDILRSRVPTTGIVE  187 (354)
T ss_pred             HHhhhcccccccCCHHHHHHHHHHHcCHHHHHHHHcCCcCCCCccHHHHHHhHHHhcCCCCCCCHHHHHhhccCcCCeeE
Confidence            866554444 7899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEE
Q psy8318         164 THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIIL  243 (313)
Q Consensus       164 ~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piil  243 (313)
                      ..|++++..+.++|+|||+++|++|.|||+++++||||+++|+|||++.||+..|++.||+.+|+++++++++.++++||
T Consensus       188 ~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiL  267 (354)
T KOG0082|consen  188 VEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIIL  267 (354)
T ss_pred             EEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCcccccccCCcccccCcCCC----------------------CCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         244 FLNKNDLFQEKITKSPLTVCFPEYT----------------------DQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       244 v~NK~Dl~~~k~~~~~l~~~f~~~~----------------------~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      |+||.|+|.+|+...++..+||+|.                      +.+.+|+|.|||+|+.+|+.+|+.+.+.|+..+
T Consensus       268 FLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n  347 (354)
T KOG0082|consen  268 FLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN  347 (354)
T ss_pred             EeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999997                      337899999999999999999999999999999


Q ss_pred             hhhcCCc
Q psy8318         302 LKDCGIR  308 (313)
Q Consensus       302 ~~~~~~~  308 (313)
                      ++..|+.
T Consensus       348 lk~~gl~  354 (354)
T KOG0082|consen  348 LKDAGLI  354 (354)
T ss_pred             HHHhcCC
Confidence            9999874

>KOG0085|consensus

Probab=100.00  E-value=2.1e-74  Score=477.82  Aligned_cols=302  Identities=54%  Similarity=0.877  Sum_probs=288.9

Q ss_pred             hhhccceEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHhHHHHHH
Q psy8318           6 WQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFF   85 (313)
Q Consensus         6 ~~~~~~killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~~~~~~~~~~~i~   85 (313)
                      ..++++|+|+||+|+||||||+||||++|+.||+++++..++..||.|++.+|..+|+||+.+.|++..+++++.|..+.
T Consensus        35 ~arrelkllllgtgesgkstfikqmriihg~gyseedrkgf~~lvyqnif~amqaMIrAMetL~I~y~~e~nk~~A~~vr  114 (359)
T KOG0085|consen   35 DARRELKLLLLGTGESGKSTFIKQMRIIHGAGYSEEDRKGFTKLVYQNIFTAMQAMIRAMETLKIPYKREENKAHASLVR  114 (359)
T ss_pred             hhhhhheeeeecCCCcchhhHHHHHHhhhcCCCChhhhccchHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhHhh
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhcccCCCCCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCccccccccceeeeecceeEEE
Q psy8318          86 TLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETH  165 (313)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~~T~g~~~~~  165 (313)
                      +.+-.. -..|...++.+|++||.||+||+||.||++|++.|++.|++.+++||..++|.||.+|+++.+.||+|+.++.
T Consensus       115 evd~ek-Vttfe~~yv~aik~LW~D~GIqeCYdRRREyqLsDSakYylsdldria~~~ylPTqQDvLRvRvPTTGi~eyp  193 (359)
T KOG0085|consen  115 EVDVEK-VTTFEKRYVSAIKWLWRDPGIQECYDRRREYQLSDSAKYYLSDLDRIATPGYLPTQQDVLRVRVPTTGIIEYP  193 (359)
T ss_pred             hcchHH-hhhhhHHHHHHHHHHHhCcchHHHHHHHHHhhcchhhhHHhhhhhhhcCcccCcchhhhheeecCcccceecC
Confidence            764322 2568889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEe
Q psy8318         166 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFL  245 (313)
Q Consensus       166 ~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~  245 (313)
                      |+..++.+++.|+|||+++|++|.|||+++.+++|.+.+|+|||++.|.++.|+++|+..+|..++.-||+.+.++|+++
T Consensus       194 fdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFL  273 (359)
T KOG0085|consen  194 FDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL  273 (359)
T ss_pred             cchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccccccCCcccccCcCCC-----------------------CCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318         246 NKNDLFQEKITKSPLTVCFPEYT-----------------------DQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANL  302 (313)
Q Consensus       246 NK~Dl~~~k~~~~~l~~~f~~~~-----------------------~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~  302 (313)
                      ||.|+.++++..+.+.+|||+|.                       .++-++.|+|||++++||+.+|..+.++|++.++
T Consensus       274 NKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L  353 (359)
T KOG0085|consen  274 NKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL  353 (359)
T ss_pred             chhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999997                       3456899999999999999999999999999999


Q ss_pred             hhcCCc
Q psy8318         303 KDCGIR  308 (313)
Q Consensus       303 ~~~~~~  308 (313)
                      ++.+|.
T Consensus       354 kE~NLv  359 (359)
T KOG0085|consen  354 KEYNLV  359 (359)
T ss_pred             HhhccC
Confidence            998873

>smart00275 G_alpha G protein alpha subunit

Probab=100.00  E-value=1.2e-70  Score=502.05  Aligned_cols=302  Identities=60%  Similarity=1.008  Sum_probs=283.0

Q ss_pred             hhhhccceEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHhHHHHH
Q psy8318           5 QWQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQF   84 (313)
Q Consensus         5 ~~~~~~~killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~~~~~~~~~~~i   84 (313)
                      ++.++.+|+||||+|+||||||+||||++|++||+++|+..|++.||.|++++|+.|+++++.++++++++++...+..+
T Consensus        16 ~~~~~~~klLLLG~geSGKSTi~KQmril~~~gfs~~E~~~~~~~I~~Nii~~~~~ll~a~~~~~i~~~~~~~~~~~~~~   95 (342)
T smart00275       16 KKKKREVKLLLLGAGESGKSTILKQMRILHGDGFSQEERREYRPLIYSNILESMKALVDAMEELNIPFEDPESILDIRII   95 (342)
T ss_pred             HHhhcchheeeeecCCCcchhHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChhhHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999998887667666


Q ss_pred             Hhhhc--ccCCCCCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCccccccccceeeeeccee
Q psy8318          85 FTLAS--AAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGII  162 (313)
Q Consensus        85 ~~~~~--~~~~~~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~~T~g~~  162 (313)
                      .....  ......+++++++.|..||+||+||.+|.++++++++|++.||+++++||++++|.||++|+++++.||+|+.
T Consensus        96 ~~~~~~~~~~~~~~~~e~~~~i~~LW~D~~iq~~~~~~~~~~l~ds~~yf~~~~~ri~~~~y~Pt~~Dil~~r~~T~Gi~  175 (342)
T smart00275       96 TEQFNKTDETENVLPKEIAKAIKALWKDEGIQECYRRRNEFQLNDSASYFLDNIDRIGDPDYVPTEQDILRSRVPTTGIQ  175 (342)
T ss_pred             hccccccccccccCCHHHHHHHHHHHCCHHHHHHHHhccccccccchhHHHHHHHHHhCCCCCCCHHHhhheeCCccceE
Confidence            65431  1112468999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318         163 ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII  242 (313)
Q Consensus       163 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii  242 (313)
                      +..+.+++..+.+||+|||+.+|++|.+||+++++||||+|+++||+.+.|++..+++.+++.+|+++++++.+.++|++
T Consensus       176 ~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~pii  255 (342)
T smart00275      176 ETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSII  255 (342)
T ss_pred             EEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCcccccccCCcccccCcCCC--------------------C---CCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         243 LFLNKNDLFQEKITKSPLTVCFPEYT--------------------D---QKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       243 lv~NK~Dl~~~k~~~~~l~~~f~~~~--------------------~---~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      |++||.|++.+|+...++..+||+|.                    .   ++.+++|.|||+|..++..+|+.+.+.|++
T Consensus       256 l~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~  335 (342)
T smart00275      256 LFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQ  335 (342)
T ss_pred             EEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999997                    1   256899999999999999999999999999


Q ss_pred             hhhhhcC
Q psy8318         300 ANLKDCG  306 (313)
Q Consensus       300 ~~~~~~~  306 (313)
                      .+++..|
T Consensus       336 ~~l~~~~  342 (342)
T smart00275      336 RNLKDAG  342 (342)
T ss_pred             HHHHhcC
Confidence            9988654

Subunit of G proteins that contains the guanine nucleotide binding site

>cd00066 G-alpha G protein alpha subunit

Probab=100.00  E-value=1.8e-70  Score=497.48  Aligned_cols=293  Identities=67%  Similarity=1.115  Sum_probs=280.6

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHhHHHHHHhhhcc
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASA   90 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~~~~~~~~~~~i~~~~~~   90 (313)
                      +|+||||+|+||||||+||||++|++||+++|+..|+..|+.|++++|+.|+++++.+++++.++++...++.+......
T Consensus         1 ~klLlLG~geSGKSTi~KQmril~~~gfs~~Er~~~~~~I~~Ni~~~~~~ll~a~~~~~i~~~~~~~~~~~~~i~~~~~~   80 (317)
T cd00066           1 VKLLLLGAGESGKSTILKQMKILHGDGFSEEELREYRPVIYSNILQSMKALLEAMERLNIPFGDPENEKDAKKILSFAPE   80 (317)
T ss_pred             CeEEEecCCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcccc
Confidence            58999999999999999999999999999999999999999999999999999999999999999988888888777554


Q ss_pred             cCCCCCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCccccccccceeeeecceeEEEEEecC
Q psy8318          91 AEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKD  170 (313)
Q Consensus        91 ~~~~~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~~T~g~~~~~~~~~~  170 (313)
                      .....+++++++.+..||+||+||++|.++++++++|++.||+++++||++++|.||.+|+++++.||+|+.+..|++++
T Consensus        81 ~~~~~~~~~~~~~i~~lW~d~~iq~~~~~r~e~~l~d~~~yf~~~~~ri~~~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~~  160 (317)
T cd00066          81 LEEGELPPELAEAIKELWKDPGIQACYDRRNEFQLNDSAKYFLDNLDRISDPDYIPTEQDILRARVKTTGIVETKFTIKN  160 (317)
T ss_pred             ccccCCCHHHHHHHHHHhCCHHHHHHHHhccccccccchHHHHHhHHHHhCCCCCCChhHheeeecccCCeeEEEEEecc
Confidence            44567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      ..+.+||+|||+.+|++|.+||+++++||||+|+++||+.+.|+...+++.+++.+|+++++++.+.++|++|++||.|+
T Consensus       161 ~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~  240 (317)
T cd00066         161 LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDL  240 (317)
T ss_pred             eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCcccccCcCCC-----------------------CCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhh
Q psy8318         251 FQEKITKSPLTVCFPEYT-----------------------DQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLK  303 (313)
Q Consensus       251 ~~~k~~~~~l~~~f~~~~-----------------------~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~  303 (313)
                      +.+|+...++..+||+|.                       .++.+++|+|||+|.++++.+|+.+.+.|+..+++
T Consensus       241 f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~l~  316 (317)
T cd00066         241 FEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNNLK  316 (317)
T ss_pred             HHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999996                       14789999999999999999999999999988775

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG0099|consensus

Probab=100.00  E-value=2.8e-68  Score=447.90  Aligned_cols=301  Identities=45%  Similarity=0.786  Sum_probs=286.8

Q ss_pred             hhccceEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHcC--CCcCCCCCHhHHHHH
Q psy8318           7 QEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLK--IDFGDHKNADCARQF   84 (313)
Q Consensus         7 ~~~~~killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~--i~~~~~~~~~~~~~i   84 (313)
                      ++.+.|+||||+|+|||||++||||++|-.||+++|+..--+-|+.|+-+++..|+.+|..++  +++++|+++..++.|
T Consensus        37 ~~aThrlLLLGagESGKsTIvKQMRILHvnGF~~~EkreKI~dI~~Ni~eai~~iv~aM~~l~p~v~l~~~~~~~~~dYI  116 (379)
T KOG0099|consen   37 YRATHRLLLLGAGESGKSTIVKQMRILHVNGFNDEEKREKIQDIKNNIKEAILTIVGAMSNLVPPVELANPENQFRVDYI  116 (379)
T ss_pred             HHHhHHhheeccccccchhhhhhhheeeecCCChHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcccCCcccchhHHHH
Confidence            567889999999999999999999999999999999999999999999999999999999998  899999999999999


Q ss_pred             HhhhcccCCCCCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCccccccccceeeeecceeEE
Q psy8318          85 FTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIET  164 (313)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~~T~g~~~~  164 (313)
                      +......+ ..+|+|+.+.++.||+|.+|+.||+|++||++.|+|+|||+++++|.+++|.|+.+|+|+|+.-|.|+.+.
T Consensus       117 ls~~~~~~-~~~~~Ef~dHv~~lW~D~Gv~acyeRSnEyqLiDcAqYFLd~~~~i~~~~Y~Ps~qDiLrcRvlTsGIfet  195 (379)
T KOG0099|consen  117 LSVMNSPD-FDYPPEFYDHVKTLWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQADYVPSDQDILRCRVLTSGIFET  195 (379)
T ss_pred             HhcCCCCc-ccCCHHHHHHHHHHhhhhhHHHHHhccCccchhhHHHHHHHhhheecccCCCCcHHHHHHhhhhccceeeE
Confidence            99876554 46899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEE
Q psy8318         165 HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILF  244 (313)
Q Consensus       165 ~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv  244 (313)
                      .|.+..++++++|+|||+.+|++|..||.++.+||||+..|+|++++-||+..|++.|++.+|+++.++.++..+.+||+
T Consensus       196 ~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlF  275 (379)
T KOG0099|consen  196 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILF  275 (379)
T ss_pred             EEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCcccccccCC--cccccCcCCC--------------------------------------CCCCeEEEEeecccCc
Q psy8318         245 LNKNDLFQEKITKS--PLTVCFPEYT--------------------------------------DQKEIYTHFTCATDTS  284 (313)
Q Consensus       245 ~NK~Dl~~~k~~~~--~l~~~f~~~~--------------------------------------~~~~~~~~~tSA~~~~  284 (313)
                      +||+|+..+|+..+  .+.++||+|.                                      ..+.+|+|+|||++++
T Consensus       276 LNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTe  355 (379)
T KOG0099|consen  276 LNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTE  355 (379)
T ss_pred             ecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechH
Confidence            99999998887654  5889999986                                      4567899999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhhhcCCc
Q psy8318         285 NIQFVFDAVTDVIIKANLKDCGIR  308 (313)
Q Consensus       285 ~v~~~f~~i~~~i~~~~~~~~~~~  308 (313)
                      ||+.+|....+.|+..++...+|+
T Consensus       356 nIrrVFnDcrdiIqr~hlrqyeLl  379 (379)
T KOG0099|consen  356 NIRRVFNDCRDIIQRMHLRQYELL  379 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999988874

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=100.00  E-value=1.8e-66  Score=485.51  Aligned_cols=293  Identities=55%  Similarity=0.968  Sum_probs=262.1

Q ss_pred             hhhhccceEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcC-------CCCC
Q psy8318           5 QWQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFG-------DHKN   77 (313)
Q Consensus         5 ~~~~~~~killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~-------~~~~   77 (313)
                      ++.++.+||||||+|+||||||+||||++|+++|+++|+..|+++|+.|++++|+.|++++..+++++.       ++++
T Consensus        53 ~~~~~~~kiLLLG~geSGKSTi~KQ~ril~~~~~~~~E~~~~~~~I~~Nii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  132 (389)
T PF00503_consen   53 KRSKREIKILLLGSGESGKSTILKQMRILYGPGFSEEERESYRPIIYSNIIQSMKQILEALEELGIPFSFSESSQLNEEN  132 (389)
T ss_dssp             HHHHEEEEEEEEESTTSSHHHHHHHHHHHHST---HHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCH-SSS-TT--STTH
T ss_pred             HhhhccceEEEECCCCcchhhHHHHHHHHhCCCCchhhhhcceeeEecCchhhHHHHHHHHHHcCCCccccccccCCHHH
Confidence            456789999999999999999999999999999999999999999999999999999999999999998       5777


Q ss_pred             HhHHHHHHhhhcccCCC---------CCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCcccc
Q psy8318          78 ADCARQFFTLASAAEEG---------DLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQ  148 (313)
Q Consensus        78 ~~~~~~i~~~~~~~~~~---------~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~  148 (313)
                      ...+..+.......+..         .+++++++.|..||+||+||++|.++++++++|++.|||++++||++++|.||+
T Consensus       133 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~~~~~~~l~d~~~YFl~~l~RI~~~~Y~PT~  212 (389)
T PF00503_consen  133 QEIAEKLKEILDPLDSSEFSLASDDNKFPEELAEDIRSLWKDPGVQECYERRNEFQLPDNAKYFLDNLDRIAQPDYIPTD  212 (389)
T ss_dssp             HHHHHHHHHHHCTTSTTCTC-----HCHHHHHHHHHHHHHHSHHHHHHHGGGGGST--TTHHHHHTTHHHHHSTTB---H
T ss_pred             HHHHHHHHhhhccccccccccccccccCCHHHHHHHHHHHCChhHHHHHHhhhcccccccHHHHhhhhhhhcCCCccCCC
Confidence            77888888776555442         478899999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeeeecceeEEEEEe-cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHH
Q psy8318         149 QDVLRTRVKTTGIIETHFTF-KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF  227 (313)
Q Consensus       149 ~dil~~~~~T~g~~~~~~~~-~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~  227 (313)
                      +|+++++.+|+|+.+..|.+ ++..+.++|+|||+++|++|.+||+++++||||+|+++|||.++||+..|++.+++.+|
T Consensus       213 ~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF  292 (389)
T PF00503_consen  213 EDILRCRVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLF  292 (389)
T ss_dssp             HHHHHS----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHH
T ss_pred             CCeeeecCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHH
Confidence            99999999999999999999 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCcEEEEeecCCcccccccCCc-ccccCcCCC-----------------------CC---CCeEEEEeec
Q psy8318         228 DSICNSKWFMDTSIILFLNKNDLFQEKITKSP-LTVCFPEYT-----------------------DQ---KEIYTHFTCA  280 (313)
Q Consensus       228 ~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~-l~~~f~~~~-----------------------~~---~~~~~~~tSA  280 (313)
                      +++++++++.++|++|++||.|++.+|+...+ +.++||+|.                       ..   +.+++|.|||
T Consensus       293 ~~i~~~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a  372 (389)
T PF00503_consen  293 ESICNNPWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCA  372 (389)
T ss_dssp             HHHHTSGGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEEST
T ss_pred             HHHHhCcccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeee
Confidence            99999999999999999999999999999998 999999993                       22   7899999999


Q ss_pred             ccCcCHHHHHHHHHHHH
Q psy8318         281 TDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       281 ~~~~~v~~~f~~i~~~i  297 (313)
                      ++.++++.+|+.|.+.|
T Consensus       373 ~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  373 TDTENIRKVFNAVKDII  389 (389)
T ss_dssp             TSHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHhcCcC
Confidence            99999999999998865

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG0070|consensus

Probab=99.97  E-value=3.2e-32  Score=220.12  Aligned_cols=134  Identities=23%  Similarity=0.377  Sum_probs=121.9

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|++.+.++++++++++||+|||.+.|.+|.+||.+++++|||+|++|          +.|+.++.+.+..+++++.
T Consensus        46 vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~D----------r~Ri~eak~eL~~~l~~~~  115 (181)
T KOG0070|consen   46 VPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSD----------RERIEEAKEELHRMLAEPE  115 (181)
T ss_pred             CCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCc----------HHHHHHHHHHHHHHHcCcc
Confidence            799999999999999999999999999999999999999999999999999          9999999999999999988


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCcCCC-CCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ..++|+++++||+|++++ ++..++.+.+.... .++.++++.|||.+|+|+.+.++|+.+.+..+
T Consensus       116 l~~~~llv~aNKqD~~~a-ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  116 LRNAPLLVFANKQDLPGA-LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             cCCceEEEEechhhcccc-CCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhcc
Confidence            899999999999999986 66666666554332 56889999999999999999999999988643

>KOG0071|consensus

Probab=99.97  E-value=1.5e-31  Score=205.11  Aligned_cols=132  Identities=23%  Similarity=0.416  Sum_probs=120.9

Q ss_pred             eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      ..||+||+.++++++++.+++||+|||.+.|++|.+||.+..++|||+|+++          .++++++...+.++++++
T Consensus        45 ~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~----------~dr~eeAr~ELh~ii~~~  114 (180)
T KOG0071|consen   45 TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSAD----------RDRIEEARNELHRIINDR  114 (180)
T ss_pred             cccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccc----------hhhHHHHHHHHHHHhCCH
Confidence            4799999999999999999999999999999999999999999999999999          899999999999999999


Q ss_pred             CCCCCcEEEEeecCCcccccccCCcccccCcCCC-CCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         235 WFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ...++|+++++||+|++.+ ++..++.++|..-. +++.|+..++||.+|+++.+.|.|+...+
T Consensus       115 em~~~~~LvlANkQDlp~A-~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~  177 (180)
T KOG0071|consen  115 EMRDAIILILANKQDLPDA-MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL  177 (180)
T ss_pred             hhhcceEEEEecCcccccc-cCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence            9999999999999999986 56667777664332 57889999999999999999999998654

>KOG0073|consensus

Probab=99.97  E-value=2.8e-30  Score=203.53  Aligned_cols=134  Identities=19%  Similarity=0.306  Sum_probs=119.0

Q ss_pred             eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      ..||.|++.+++.++++++++||+|||...|+.|.+||++++++|||+|++|          +.++++....+..++...
T Consensus        44 i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD----------~~r~~e~~~~L~~lL~ee  113 (185)
T KOG0073|consen   44 ISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSD----------RMRMQECKQELTELLVEE  113 (185)
T ss_pred             cCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECch----------HHHHHHHHHHHHHHHhhh
Confidence            3699999999999999999999999999999999999999999999999999          999999999999999988


Q ss_pred             CCCCCcEEEEeecCCcccccccCCccccc--CcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         235 WFMDTSIILFLNKNDLFQEKITKSPLTVC--FPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~~--f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      ....+|++|++||+|+..+ +...++...  +.++.+.+.|..+.|||.+|+++.+.|+|+++.+..
T Consensus       114 rlaG~~~Lvlank~dl~~~-l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  114 RLAGAPLLVLANKQDLPGA-LSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMS  179 (185)
T ss_pred             hhcCCceEEEEecCcCccc-cCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence            8999999999999999864 554444422  223325678999999999999999999999998876

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.97  E-value=2.3e-29  Score=210.14  Aligned_cols=132  Identities=20%  Similarity=0.350  Sum_probs=116.5

Q ss_pred             eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      ..||+|++...+++++..+.+||+||+..+|..|..||.+++++|||+|.++          .+++.++...+.++++++
T Consensus        42 ~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd----------~~~l~e~~~~L~~ll~~~  111 (175)
T PF00025_consen   42 TIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSD----------PERLQEAKEELKELLNDP  111 (175)
T ss_dssp             EEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTG----------GGGHHHHHHHHHHHHTSG
T ss_pred             cCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEeccc----------ceeecccccchhhhcchh
Confidence            4799999999999999999999999999999999999999999999999998          889999999999999988


Q ss_pred             CCCCCcEEEEeecCCcccccccCCcccccC--cCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         235 WFMDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~~f--~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ...++|+++++||+|+.+. +...++...+  ......+.+.++.|||.+|+|+.++|+||.++|
T Consensus       112 ~~~~~piLIl~NK~D~~~~-~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  112 ELKDIPILILANKQDLPDA-MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             GGTTSEEEEEEESTTSTTS-STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             hcccceEEEEeccccccCc-chhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence            8889999999999998764 4444454443  223135789999999999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0084|consensus

Probab=99.96  E-value=1.9e-29  Score=205.33  Aligned_cols=133  Identities=18%  Similarity=0.243  Sum_probs=111.3

Q ss_pred             eeeeccee--EEEEEe--cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH
Q psy8318         155 RVKTTGII--ETHFTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI  230 (313)
Q Consensus       155 ~~~T~g~~--~~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~  230 (313)
                      +..|+|+.  ..++++  +.+++++|||+||+++|....+||++|++||+|+|+++          ..+|.....|++++
T Consensus        38 ~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~----------~~SF~~v~~Wi~Ei  107 (205)
T KOG0084|consen   38 YISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITK----------QESFNNVKRWIQEI  107 (205)
T ss_pred             hcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEccc----------HHHhhhHHHHHHHh
Confidence            46788964  445555  45899999999999999999999999999999999999          88888888888887


Q ss_pred             HhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeE-EEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         231 CNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIY-THFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       231 ~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~-~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      -. ....++|.+|||||+|+.++++...+..+.|.+   ..++. +++|||+++.||+++|..+...++.+.
T Consensus       108 ~~-~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~---~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~  175 (205)
T KOG0084|consen  108 DR-YASENVPKLLVGNKCDLTEKRVVSTEEAQEFAD---ELGIPIFLETSAKDSTNVEDAFLTLAKELKQRK  175 (205)
T ss_pred             hh-hccCCCCeEEEeeccccHhheecCHHHHHHHHH---hcCCcceeecccCCccCHHHHHHHHHHHHHHhc
Confidence            43 455678999999999999887766666555543   35666 999999999999999999999998764

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=2.3e-28  Score=205.21  Aligned_cols=133  Identities=26%  Similarity=0.449  Sum_probs=110.4

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|++...++.+++.+++||++||+.++.+|.+||++++++|||+|+++          ..++.++..++..+++...
T Consensus        46 ~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~----------~~s~~~~~~~l~~~l~~~~  115 (181)
T PLN00223         46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDE  115 (181)
T ss_pred             cCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCc----------HHHHHHHHHHHHHHhcCHh
Confidence            477787777788888999999999999999999999999999999999998          7889999999999887766


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCc--CCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFP--EYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~--~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ..++|++|++||+|+..+ ....++.+.+.  .. ..+.+++++|||++|+||.++|+||.+.+..+
T Consensus       116 ~~~~piilv~NK~Dl~~~-~~~~~~~~~l~l~~~-~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        116 LRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK  180 (181)
T ss_pred             hCCCCEEEEEECCCCCCC-CCHHHHHHHhCcccc-CCCceEEEeccCCCCCCHHHHHHHHHHHHhhc
Confidence            678999999999998764 33334433332  22 34567788999999999999999999988654

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.95  E-value=4.3e-27  Score=196.51  Aligned_cols=131  Identities=24%  Similarity=0.411  Sum_probs=106.4

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|+....+.++++++.+||++|+..++.+|..||++++++|||+|+++          +.+++++.+++..+++...
T Consensus        42 ~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~----------~~s~~~~~~~l~~~~~~~~  111 (175)
T smart00177       42 IPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSND----------RDRIDEAREELHRMLNEDE  111 (175)
T ss_pred             CCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHhhCHh
Confidence            366777666777788999999999999999999999999999999999998          7889999999999887655


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCcCC-CCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEY-TDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~-~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ..++|++||+||+|+.+. ....++...+... ...+.+++++|||++|+||.++|+||.+.+
T Consensus       112 ~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      112 LRDAVILVFANKQDLPDA-MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             hcCCcEEEEEeCcCcccC-CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            567999999999998753 2323333322111 134567888999999999999999998865

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.95  E-value=3.8e-27  Score=193.72  Aligned_cols=128  Identities=25%  Similarity=0.445  Sum_probs=103.5

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|+....+.++.+.+.+||++|++.++.+|..||++++++|||+|+++          ..++.++..++.+++....
T Consensus        29 ~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~----------~~s~~~~~~~~~~~~~~~~   98 (159)
T cd04150          29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERIGEAREELQRMLNEDE   98 (159)
T ss_pred             CCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhcHH
Confidence            356676666677788999999999999999999999999999999999998          7889999999998887666


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccC--cCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f--~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      ..++|++|++||+|+... ....++...+  ..+ ..+.+.++++||++|+||+++|+||.+
T Consensus        99 ~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~-~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150          99 LRDAVLLVFANKQDLPNA-MSAAEVTDKLGLHSL-RNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             hcCCCEEEEEECCCCCCC-CCHHHHHHHhCcccc-CCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            667999999999998653 2222322222  222 345778889999999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04149 Arf6 Arf6 subfamily

Probab=99.94  E-value=8.2e-27  Score=193.53  Aligned_cols=128  Identities=24%  Similarity=0.441  Sum_probs=103.3

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|+....+...++.+++||++|+++++.+|..+|++++++|||+|+++          ..++.++..++.++++...
T Consensus        38 ~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~----------~~s~~~~~~~~~~~~~~~~  107 (168)
T cd04149          38 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSAD----------RDRIDEARQELHRIINDRE  107 (168)
T ss_pred             cCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCc----------hhhHHHHHHHHHHHhcCHh
Confidence            356676666666778999999999999999999999999999999999998          6789999999999887655


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCc--CCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFP--EYTDQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~--~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      ..++|++|++||+|+... ....++.+.+.  .. ..+.+.+++|||++|.||.++|+||.+
T Consensus       108 ~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~-~~~~~~~~~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         108 MRDALLLVFANKQDLPDA-MKPHEIQEKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             hcCCcEEEEEECcCCccC-CCHHHHHHHcCCCcc-CCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence            667999999999998653 33333333321  11 234567899999999999999999975

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.94  E-value=1.2e-26  Score=194.92  Aligned_cols=133  Identities=25%  Similarity=0.429  Sum_probs=107.2

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|+....++..++.+++||++|++.++.+|..||++++++|||+|+++          ..++.++..++.+++....
T Consensus        46 ~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~----------~~s~~~~~~~l~~~~~~~~  115 (182)
T PTZ00133         46 IPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSND----------RERIGDAREELERMLSEDE  115 (182)
T ss_pred             CCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhCHh
Confidence            366676666677788999999999999999999999999999999999998          7889999989998887655


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccC--cCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f--~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ..++|++|++||.|+.+. ....++...+  ... +.+.+++++|||++|+|++++|+||.+.+.++
T Consensus       116 ~~~~piilv~NK~Dl~~~-~~~~~i~~~l~~~~~-~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        116 LRDAVLLVFANKQDLPNA-MSTTEVTEKLGLHSV-RQRNWYIQGCCATTAQGLYEGLDWLSANIKKS  180 (182)
T ss_pred             hcCCCEEEEEeCCCCCCC-CCHHHHHHHhCCCcc-cCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHh
Confidence            677999999999998652 2222332222  112 34567788999999999999999999887654

>KOG0092|consensus

Probab=99.94  E-value=6.7e-27  Score=189.75  Aligned_cols=134  Identities=16%  Similarity=0.253  Sum_probs=108.9

Q ss_pred             eeecc--eeEEEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318         156 VKTTG--IIETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC  231 (313)
Q Consensus       156 ~~T~g--~~~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~  231 (313)
                      .||+|  |....+...+  ++|.||||+||++++.+-+.||++++++|.|||+++          ..+|..+..|+.++-
T Consensus        35 e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~----------~~SF~~aK~WvkeL~  104 (200)
T KOG0092|consen   35 EPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITD----------EESFEKAKNWVKELQ  104 (200)
T ss_pred             ccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEeccc----------HHHHHHHHHHHHHHH
Confidence            58888  5555666655  888999999999999999999999999999999999          899999999999985


Q ss_pred             hCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhh
Q psy8318         232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLK  303 (313)
Q Consensus       232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~  303 (313)
                      . ....++-|.|+|||+|+...+-...+-.+.+.   ...++.+++|||++|.||.++|..|.+.+.....+
T Consensus       105 ~-~~~~~~vialvGNK~DL~~~R~V~~~ea~~yA---e~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~  172 (200)
T KOG0092|consen  105 R-QASPNIVIALVGNKADLLERREVEFEEAQAYA---ESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQ  172 (200)
T ss_pred             h-hCCCCeEEEEecchhhhhhcccccHHHHHHHH---HhcCCEEEEEecccccCHHHHHHHHHHhccCcccc
Confidence            4 34477889999999999874322222222222   44788999999999999999999999998865443

>cd04158 ARD1 ARD1 subfamily

Probab=99.94  E-value=5.1e-26  Score=188.87  Aligned_cols=134  Identities=22%  Similarity=0.344  Sum_probs=108.0

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|+....++++++++.+||++|++.++..|..+++++++++||+|+++          ..++.++..++..++....
T Consensus        28 ~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~----------~~s~~~~~~~~~~~~~~~~   97 (169)
T cd04158          28 IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSH----------RDRVSEAHSELAKLLTEKE   97 (169)
T ss_pred             CCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCc----------HHHHHHHHHHHHHHhcChh
Confidence            466677666777888999999999999999999999999999999999998          7889999999999987655


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCcCCC--CCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYT--DQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~--~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ..+.|++|++||+|+.++ ....++.+......  ..+.+.+++|||++|.||.++|+||.+.+...
T Consensus        98 ~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~  163 (169)
T cd04158          98 LRDALLLIFANKQDVAGA-LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAA  163 (169)
T ss_pred             hCCCCEEEEEeCcCcccC-CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhc
Confidence            667899999999998653 33333333322110  12356788999999999999999999887654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04120 Rab12 Rab12 subfamily

Probab=99.94  E-value=3.6e-26  Score=194.80  Aligned_cols=127  Identities=16%  Similarity=0.176  Sum_probs=97.0

Q ss_pred             eeEEEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCC
Q psy8318         161 IIETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMD  238 (313)
Q Consensus       161 ~~~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~  238 (313)
                      +....+.+++  +.+++|||+||+.++.+|..||++++++|+|||+++          ..+++++..|+..+ ......+
T Consensus        37 ~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd----------~~Sf~~l~~w~~~i-~~~~~~~  105 (202)
T cd04120          37 FKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK----------KETFDDLPKWMKMI-DKYASED  105 (202)
T ss_pred             EEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHH-HHhCCCC
Confidence            3444556654  889999999999999999999999999999999999          88898888877754 3334467


Q ss_pred             CcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         239 TSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       239 ~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      .|++||+||+|+..++.........+.+  ...++.+++|||++|.||.++|+|+.+.+...
T Consensus       106 ~piilVgNK~DL~~~~~v~~~~~~~~a~--~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~  165 (202)
T cd04120         106 AELLLVGNKLDCETDREISRQQGEKFAQ--QITGMRFCEASAKDNFNVDEIFLKLVDDILKK  165 (202)
T ss_pred             CcEEEEEECcccccccccCHHHHHHHHH--hcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999986533222121122211  11356789999999999999999999988653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0078|consensus

Probab=99.94  E-value=2.2e-26  Score=190.11  Aligned_cols=132  Identities=19%  Similarity=0.198  Sum_probs=109.3

Q ss_pred             eeeeccee--EEEEEe--cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH
Q psy8318         155 RVKTTGII--ETHFTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI  230 (313)
Q Consensus       155 ~~~T~g~~--~~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~  230 (313)
                      +..|+|+.  ..+++.  ..+.+++|||+||++++.+...||++|.+++.|||+++          ..+++....|++.+
T Consensus        41 ~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitn----------e~Sfeni~~W~~~I  110 (207)
T KOG0078|consen   41 FISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITN----------EKSFENIRNWIKNI  110 (207)
T ss_pred             ccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccc----------hHHHHHHHHHHHHH
Confidence            36788854  344555  45899999999999999999999999999999999999          78888888877776


Q ss_pred             HhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         231 CNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       231 ~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      - ......+|++|||||+|+..++....+..+.+.   ...++.+++|||++|.||.++|..|++.++.+
T Consensus       111 ~-e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA---~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k  176 (207)
T KOG0078|consen  111 D-EHASDDVVKILVGNKCDLEEKRQVSKERGEALA---REYGIKFFETSAKTNFNIEEAFLSLARDILQK  176 (207)
T ss_pred             H-hhCCCCCcEEEeeccccccccccccHHHHHHHH---HHhCCeEEEccccCCCCHHHHHHHHHHHHHhh
Confidence            4 345568999999999999886666655555544   33689999999999999999999999999854

>KOG0075|consensus

Probab=99.94  E-value=1e-26  Score=180.01  Aligned_cols=132  Identities=20%  Similarity=0.306  Sum_probs=117.8

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|++.+.++-+++.+.+||+|||+++|.+|..|++++++++||+|.+|          +..++-+...+.+++..+.
T Consensus        50 iptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad----------~~k~~~sr~EL~~LL~k~~  119 (186)
T KOG0075|consen   50 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAAD----------PDKLEASRSELHDLLDKPS  119 (186)
T ss_pred             cccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCC----------cccchhhHHHHHHHhcchh
Confidence            699999999999999999999999999999999999999999999999999          8899999999999999999


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCcCCC-CCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      ..++|++++|||.|++++ +....+.+.+.... .++.+.++.+|+++..||+.+.+|+.+.-.
T Consensus       120 l~gip~LVLGnK~d~~~A-L~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  120 LTGIPLLVLGNKIDLPGA-LSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK  182 (186)
T ss_pred             hcCCcEEEecccccCccc-ccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence            999999999999999886 55555544432221 568899999999999999999999988654

>cd04121 Rab40 Rab40 subfamily

Probab=99.94  E-value=6e-26  Score=191.58  Aligned_cols=121  Identities=12%  Similarity=0.127  Sum_probs=97.6

Q ss_pred             EEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318         164 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI  241 (313)
Q Consensus       164 ~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi  241 (313)
                      ..+.+++  +.+++||++|++.++.+|..|+++++++|+|+|+++          ..+++++..|+.++...  ..++|+
T Consensus        46 ~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~----------~~Sf~~~~~w~~~i~~~--~~~~pi  113 (189)
T cd04121          46 TTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITN----------RWSFDGIDRWIKEIDEH--APGVPK  113 (189)
T ss_pred             EEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh--CCCCCE
Confidence            3444444  789999999999999999999999999999999999          89999999999888553  257999


Q ss_pred             EEEeecCCcccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         242 ILFLNKNDLFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       242 ilv~NK~Dl~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +|||||.|+...+. ..++...+ .   +..++.+++|||++|.||+++|+++.+.+..+
T Consensus       114 ilVGNK~DL~~~~~v~~~~~~~~-a---~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~  169 (189)
T cd04121         114 ILVGNRLHLAFKRQVATEQAQAY-A---ERNGMTFFEVSPLCNFNITESFTELARIVLMR  169 (189)
T ss_pred             EEEEECccchhccCCCHHHHHHH-H---HHcCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999865422 22222222 1   23567899999999999999999999988754

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0076|consensus

Probab=99.93  E-value=8.8e-27  Score=185.51  Aligned_cols=134  Identities=18%  Similarity=0.279  Sum_probs=119.9

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|.+..+++..+..+.+||.|||+..|++|..||..+|++||++|.++          +.+++++...|+.++.+..
T Consensus        54 ~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~----------~eR~~~~~t~~~~v~~~E~  123 (197)
T KOG0076|consen   54 TPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATD----------RERFEESKTAFEKVVENEK  123 (197)
T ss_pred             ecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCC----------HHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999999999999          8999999999999999999


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCc--CCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFP--EYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~--~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ..++|+++.+||+|+.++ +...++...|.  +....+.+.+.++||.+|+||.+..+|+.+.+..+
T Consensus       124 leg~p~L~lankqd~q~~-~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  124 LEGAPVLVLANKQDLQNA-MEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hcCCchhhhcchhhhhhh-hhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence            999999999999999875 45556666655  22245667889999999999999999999988654

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.93  E-value=1.9e-25  Score=185.07  Aligned_cols=129  Identities=16%  Similarity=0.246  Sum_probs=104.3

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|+....+..++.++++||++|+..++.+|..||++++++|||+|+++          ..++.++..++..+.....
T Consensus        28 ~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~----------~~s~~~~~~~l~~l~~~~~   97 (167)
T cd04161          28 APTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSD----------DDRVQEVKEILRELLQHPR   97 (167)
T ss_pred             cCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCc----------hhHHHHHHHHHHHHHcCcc
Confidence            466777777788889999999999999999999999999999999999998          7789999999999987766


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccC--cCCC--CCCCeEEEEeecccC------cCHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCF--PEYT--DQKEIYTHFTCATDT------SNIQFVFDAVTD  295 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f--~~~~--~~~~~~~~~tSA~~~------~~v~~~f~~i~~  295 (313)
                      ..++|++||+||+|+.... ...++.+.+  .++.  ....+++++|||++|      +|+.+.|+||.+
T Consensus        98 ~~~~piliv~NK~Dl~~~~-~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161          98 VSGKPILVLANKQDKKNAL-LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             ccCCcEEEEEeCCCCcCCC-CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence            6789999999999987642 222222221  1111  124578889999998      899999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>KOG0094|consensus

Probab=99.93  E-value=6.1e-26  Score=184.20  Aligned_cols=134  Identities=15%  Similarity=0.145  Sum_probs=108.5

Q ss_pred             eeeecceeE--EEEEe--cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH
Q psy8318         155 RVKTTGIIE--THFTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI  230 (313)
Q Consensus       155 ~~~T~g~~~--~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~  230 (313)
                      +.+|+|+..  .++.+  ..+++++|||+||++||.+-+.|++++.++|.|+|+++          .++|+.+.+|++.+
T Consensus        51 YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~----------~~Sfe~t~kWi~dv  120 (221)
T KOG0094|consen   51 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITD----------RNSFENTSKWIEDV  120 (221)
T ss_pred             ccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccc----------cchHHHHHHHHHHH
Confidence            467788654  34444  34899999999999999999999999999999999999          99999999999999


Q ss_pred             HhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         231 CNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       231 ~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      .+.+...++-|+|||||.||.+++-...+..+...   +..+..+.+|||+.|.||..+|..|...+....
T Consensus       121 ~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kA---kel~a~f~etsak~g~NVk~lFrrIaa~l~~~~  188 (221)
T KOG0094|consen  121 RRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKA---KELNAEFIETSAKAGENVKQLFRRIAAALPGME  188 (221)
T ss_pred             HhccCCCceEEEEEcccccccchhhhhHHHHHHHH---HHhCcEEEEecccCCCCHHHHHHHHHHhccCcc
Confidence            98877667889999999999876422222222111   334668899999999999999999998877654

>KOG0074|consensus

Probab=99.93  E-value=2.9e-26  Score=176.37  Aligned_cols=130  Identities=18%  Similarity=0.316  Sum_probs=110.6

Q ss_pred             eeecceeEEEEEecC-ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         156 VKTTGIIETHFTFKD-LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~-~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      .||.||+...+.+.+ +.+++||+|||+..|..|.+||+++|++|||+|++|          ..+++|.-+.+-+++...
T Consensus        46 tpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D----------~krfeE~~~el~ELleee  115 (185)
T KOG0074|consen   46 TPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTD----------EKRFEEISEELVELLEEE  115 (185)
T ss_pred             cccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCc----------hHhHHHHHHHHHHHhhhh
Confidence            588899999999966 999999999999999999999999999999999998          889999999999998888


Q ss_pred             CCCCCcEEEEeecCCcccccccCCcccc--cCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         235 WFMDTSIILFLNKNDLFQEKITKSPLTV--CFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~--~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ..+.+|++++.||+|+..+ .+.+++..  .+... +.+.+++.+|||..++++....+|++...
T Consensus       116 Kl~~vpvlIfankQdllta-a~~eeia~klnl~~l-rdRswhIq~csals~eg~~dg~~wv~sn~  178 (185)
T KOG0074|consen  116 KLAEVPVLIFANKQDLLTA-AKVEEIALKLNLAGL-RDRSWHIQECSALSLEGSTDGSDWVQSNP  178 (185)
T ss_pred             hhhccceeehhhhhHHHhh-cchHHHHHhcchhhh-hhceEEeeeCccccccCccCcchhhhcCC
Confidence            8899999999999998754 22222222  22222 56789999999999999999999987543

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.93  E-value=4.3e-25  Score=183.86  Aligned_cols=118  Identities=15%  Similarity=0.127  Sum_probs=92.4

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+++||++|++.++.+|..++.+++++|+|+|+++          ..++.....|+..+.......++|++||+||+|
T Consensus        49 ~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~----------~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~D  118 (172)
T cd04141          49 PALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTD----------RHSFQEASEFKKLITRVRLTEDIPLVLVGNKVD  118 (172)
T ss_pred             EEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCc----------hhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChh
Confidence            3679999999999999999999999999999999999          788888877665554433335799999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +...+....+....+.   ...++.+++|||++|.||.++|+|+.+.+.+.
T Consensus       119 l~~~~~v~~~~~~~~a---~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~  166 (172)
T cd04141         119 LESQRQVTTEEGRNLA---REFNCPFFETSAALRHYIDDAFHGLVREIRRK  166 (172)
T ss_pred             hhhcCccCHHHHHHHH---HHhCCEEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            8654322211111221   23467899999999999999999999888754

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01875 RhoG RhoG subfamily

Probab=99.92  E-value=3.6e-25  Score=187.46  Aligned_cols=120  Identities=14%  Similarity=0.232  Sum_probs=89.6

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHH-HHHHHHhCCCCCCCcEEEEeec
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK-LFDSICNSKWFMDTSIILFLNK  247 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~-~~~~~~~~~~~~~~piilv~NK  247 (313)
                      +.+.+++|||+||+.++.+|..||++++++|+|||+++          +.+++++.. |...+...  ..++|++||+||
T Consensus        49 ~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~----------~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK  116 (191)
T cd01875          49 RTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIAS----------PSSYENVRHKWHPEVCHH--CPNVPILLVGTK  116 (191)
T ss_pred             EEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh--CCCCCEEEEEeC
Confidence            34789999999999999999999999999999999999          788888864 55555332  257999999999


Q ss_pred             CCcccccccCCcccc---------cCcCCCCCCC-eEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         248 NDLFQEKITKSPLTV---------CFPEYTDQKE-IYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       248 ~Dl~~~k~~~~~l~~---------~f~~~~~~~~-~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      .|+....-....+.+         .-..+....+ +.+++|||++|.||.++|.++.+.+...
T Consensus       117 ~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~~  179 (191)
T cd01875         117 KDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNP  179 (191)
T ss_pred             hhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhcc
Confidence            998653211000000         0001112233 5799999999999999999999988654

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04133 Rop_like Rop subfamily

Probab=99.92  E-value=6.7e-25  Score=183.19  Aligned_cols=133  Identities=20%  Similarity=0.252  Sum_probs=97.8

Q ss_pred             CCCccccccccceeeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHH
Q psy8318         142 PNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI  221 (313)
Q Consensus       142 ~~y~Pt~~dil~~~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~  221 (313)
                      ++|.||..+.+....        .++-..+++++|||+|++.++.++..+|++++++|+|+|+++          ..+++
T Consensus        28 ~~~~~Ti~~~~~~~~--------~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~----------~~Sf~   89 (176)
T cd04133          28 TDYIPTVFDNFSANV--------SVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLIS----------RASYE   89 (176)
T ss_pred             CCCCCcceeeeEEEE--------EECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCC----------HHHHH
Confidence            457777755442111        112234889999999999999999999999999999999999          88998


Q ss_pred             HH-HHHHHHHHhCCCCCCCcEEEEeecCCcccccc-----------cCCcccccCcCCCCCCCe-EEEEeecccCcCHHH
Q psy8318         222 ES-MKLFDSICNSKWFMDTSIILFLNKNDLFQEKI-----------TKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQF  288 (313)
Q Consensus       222 e~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~-----------~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~  288 (313)
                      .. ..|+..+....  .++|++|||||+|+..++.           ...+ ...+.   ...++ .+++|||++|.||++
T Consensus        90 ~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~-~~~~a---~~~~~~~~~E~SAk~~~nV~~  163 (176)
T cd04133          90 NVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQ-GEELR---KQIGAAAYIECSSKTQQNVKA  163 (176)
T ss_pred             HHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHH-HHHHH---HHcCCCEEEECCCCcccCHHH
Confidence            87 46777764432  4799999999999965431           1111 11121   22344 589999999999999


Q ss_pred             HHHHHHHHHH
Q psy8318         289 VFDAVTDVII  298 (313)
Q Consensus       289 ~f~~i~~~i~  298 (313)
                      +|+.+.+.++
T Consensus       164 ~F~~~~~~~~  173 (176)
T cd04133         164 VFDAAIKVVL  173 (176)
T ss_pred             HHHHHHHHHh
Confidence            9999998763

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0394|consensus

Probab=99.92  E-value=5.7e-25  Score=176.84  Aligned_cols=135  Identities=11%  Similarity=0.142  Sum_probs=100.1

Q ss_pred             eeecc--eeEEEEEe--cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318         156 VKTTG--IIETHFTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC  231 (313)
Q Consensus       156 ~~T~g--~~~~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~  231 (313)
                      ..|+|  |....+.+  +.+.++||||+||++|+++.-.+|+++|+++.|+|+.+          ..+++..-.|-++++
T Consensus        39 kaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~----------~~Sfe~L~~Wr~EFl  108 (210)
T KOG0394|consen   39 KATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNN----------PKSFENLENWRKEFL  108 (210)
T ss_pred             ccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCC----------hhhhccHHHHHHHHH
Confidence            45666  33344444  34889999999999999999999999999999999998          566665555655655


Q ss_pred             hC---CCCCCCcEEEEeecCCccccc--ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318         232 NS---KWFMDTSIILFLNKNDLFQEK--ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANL  302 (313)
Q Consensus       232 ~~---~~~~~~piilv~NK~Dl~~~k--~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~  302 (313)
                      ..   .....-|++|+|||+|+.+.+  .....-.+.++.  .+.++.+|+|||+++.||.++|..+.+..+.+.-
T Consensus       109 ~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~--s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  109 IQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK--SKGNIPYFETSAKEATNVDEAFEEIARRALANED  182 (210)
T ss_pred             HhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH--hcCCceeEEecccccccHHHHHHHHHHHHHhccc
Confidence            42   223457999999999997632  222222222221  2367899999999999999999999999987653

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.92  E-value=1.2e-24  Score=183.26  Aligned_cols=129  Identities=16%  Similarity=0.273  Sum_probs=103.9

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      ||.+.....+.+++.++.+||++|+..++.+|..|+.+++++|||+|+++          ..++.++..++..+++....
T Consensus        47 ~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~----------~~~~~~~~~~l~~l~~~~~~  116 (184)
T smart00178       47 PTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYD----------KERFAESKRELDALLSDEEL  116 (184)
T ss_pred             CccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCc----------HHHHHHHHHHHHHHHcChhh
Confidence            34444455666788999999999999999999999999999999999998          77888888888888876666


Q ss_pred             CCCcEEEEeecCCcccccccCCcccccCcCCC--------CCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYT--------DQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~--------~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      .++|+++++||+|+..+ +...++.+.+....        ..+.+.+++|||++|+|+.++++||.+.
T Consensus       117 ~~~piliv~NK~Dl~~~-~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      117 ATVPFLILGNKIDAPYA-ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             cCCCEEEEEeCccccCC-CCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence            78999999999998653 44445554443221        1256789999999999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04157 Arl6 Arl6 subfamily

Probab=99.92  E-value=1.1e-24  Score=178.80  Aligned_cols=128  Identities=23%  Similarity=0.288  Sum_probs=99.9

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|+....+..++.++++||++|++.++.+|..++++++++|||+|+++          ..++..+..++..+.+.+.
T Consensus        30 ~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~~~~~~~~~~~~~~~~~~   99 (162)
T cd04157          30 VPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD----------RLRLVVVKDELELLLNHPD   99 (162)
T ss_pred             cCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc----------HHHHHHHHHHHHHHHcCcc
Confidence            466676666667788999999999999999999999999999999999998          7788888888888776543


Q ss_pred             C--CCCcEEEEeecCCcccccccCCcccccC--cCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         236 F--MDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       236 ~--~~~piilv~NK~Dl~~~k~~~~~l~~~f--~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      +  .+.|+++++||+|+..+. ....+...+  ... ....+.+++|||++|.|++++|+||.+
T Consensus       100 ~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~l~~~~~-~~~~~~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         100 IKHRRVPILFFANKMDLPDAL-TAVKITQLLGLENI-KDKPWHIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             cccCCCCEEEEEeCccccCCC-CHHHHHHHhCCccc-cCceEEEEEeeCCCCCchHHHHHHHhc
Confidence            3  479999999999987532 112222222  111 224567899999999999999999875

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04154 Arl2 Arl2 subfamily

Probab=99.92  E-value=1.2e-24  Score=181.19  Aligned_cols=129  Identities=18%  Similarity=0.296  Sum_probs=102.7

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|+....+.+++..+.+||++|++.++..|..+++++++++||+|+++          ..++.+...++..++....
T Consensus        43 ~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~  112 (173)
T cd04154          43 SPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSD----------RLRLDDCKRELKELLQEER  112 (173)
T ss_pred             CCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHhChh
Confidence            356676666777788899999999999999999999999999999999998          7788888888888877655


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCcCCC-CCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      ..++|++|++||+|+.... ...++.+.+.... ....+.++++||++|+|+.++|+|+.+
T Consensus       113 ~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         113 LAGATLLILANKQDLPGAL-SEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             hcCCCEEEEEECcccccCC-CHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence            5789999999999987532 2223333332110 235678999999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.92  E-value=1.4e-24  Score=187.68  Aligned_cols=115  Identities=14%  Similarity=0.138  Sum_probs=93.2

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      +.+++.+||++|++.++.+|..||++++++|+|||+++          ..+++....|+..+...  ..+.|++||+||+
T Consensus        60 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~----------~~s~~~i~~w~~~i~~~--~~~~piilvgNK~  127 (219)
T PLN03071         60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKV  127 (219)
T ss_pred             eEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCC----------HHHHHHHHHHHHHHHHh--CCCCcEEEEEEch
Confidence            34799999999999999999999999999999999998          78888888888877543  2579999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |+.........+  .+.   ...++.+++|||++|.||.++|.|+.+.+.+.
T Consensus       128 Dl~~~~v~~~~~--~~~---~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        128 DVKNRQVKAKQV--TFH---RKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             hhhhccCCHHHH--HHH---HhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence            986533322222  111   23567889999999999999999999988643

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.92  E-value=2.1e-24  Score=184.21  Aligned_cols=118  Identities=15%  Similarity=0.107  Sum_probs=92.9

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC---CCCCCCcEEEEee
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS---KWFMDTSIILFLN  246 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~---~~~~~~piilv~N  246 (313)
                      .+.+.+||++|++.++.+|..+|++++++|+|+|+++          +.+++++..|+..+...   +...++|++||+|
T Consensus        49 ~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~----------~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~N  118 (201)
T cd04107          49 VVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTR----------PSTFEAVLKWKADLDSKVTLPNGEPIPCLLLAN  118 (201)
T ss_pred             EEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEE
Confidence            4788999999999999999999999999999999998          88888888777766432   2235789999999


Q ss_pred             cCCcccc-cccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         247 KNDLFQE-KITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       247 K~Dl~~~-k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |+|+... .....++.+....+   ..+.+++|||++|.||.++|+|+.+.+...
T Consensus       119 K~Dl~~~~~~~~~~~~~~~~~~---~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~  170 (201)
T cd04107         119 KCDLKKRLAKDGEQMDQFCKEN---GFIGWFETSAKEGINIEEAMRFLVKNILAN  170 (201)
T ss_pred             CCCcccccccCHHHHHHHHHHc---CCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            9998742 22233333332222   225789999999999999999999988764

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.92  E-value=2.4e-24  Score=179.66  Aligned_cols=127  Identities=18%  Similarity=0.311  Sum_probs=102.0

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      ||+|.....+.+++.++.+||++|++.++..|..+|++++++|||+|+++          ..++.++..++.++++....
T Consensus        45 ~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~----------~~~~~~~~~~l~~~~~~~~~  114 (174)
T cd04153          45 PTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTD----------RERLPLTKEELYKMLAHEDL  114 (174)
T ss_pred             CccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchhh
Confidence            55666666677788999999999999999999999999999999999998          67888888888888876666


Q ss_pred             CCCcEEEEeecCCcccccccCCcccccCc--CCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKITKSPLTVCFP--EYTDQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~--~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      .++|+++++||+|+... ....++.+.+.  .. ..+.+.++++||++|+||+++|+||.+
T Consensus       115 ~~~p~viv~NK~Dl~~~-~~~~~i~~~l~~~~~-~~~~~~~~~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         115 RKAVLLVLANKQDLKGA-MTPAEISESLGLTSI-RDHTWHIQGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             cCCCEEEEEECCCCCCC-CCHHHHHHHhCcccc-cCCceEEEecccCCCCCHHHHHHHHhc
Confidence            77999999999998652 22223333332  11 235678899999999999999999874

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04127 Rab27A Rab27a subfamily

Probab=99.92  E-value=2.6e-24  Score=180.03  Aligned_cols=116  Identities=17%  Similarity=0.315  Sum_probs=93.3

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+++||++||+.++..|..++++++++|+|+|+++          ..++.+...|+..+.......+.|+++|+||+|+
T Consensus        63 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl  132 (180)
T cd04127          63 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTN----------EQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADL  132 (180)
T ss_pred             EEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccc
Confidence            678999999999999999999999999999999998          7888888888888765444457899999999998


Q ss_pred             cccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         251 FQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       251 ~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ..++ +...+..+ +.   ...++.++++||++|.|++++|+++.+.+.++
T Consensus       133 ~~~~~v~~~~~~~-~~---~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         133 EDQRQVSEEQAKA-LA---DKYGIPYFETSAATGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             hhcCccCHHHHHH-HH---HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            6542 22222222 21   12356789999999999999999999887653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.91  E-value=3.2e-24  Score=177.13  Aligned_cols=129  Identities=17%  Similarity=0.328  Sum_probs=104.7

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|.....+.+++..+.+||++|++.++..|..+++++++++||+|+++          ..++.+...++..++....
T Consensus        35 ~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~----------~~~~~~~~~~~~~~~~~~~  104 (167)
T cd04160          35 TPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTD----------RERFEESKSALEKVLRNEA  104 (167)
T ss_pred             CCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECch----------HHHHHHHHHHHHHHHhChh
Confidence            567787777788889999999999999999999999999999999999998          5678888889988887666


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCcCCC---CCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYT---DQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~---~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      ..+.|++|++||+|+... ....++...+.++.   ....+.++++||++|+|+.++|+||.+
T Consensus       105 ~~~~p~ilv~NK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         105 LEGVPLLILANKQDLPDA-LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             hcCCCEEEEEEccccccC-CCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence            678999999999998653 22233333333221   224578999999999999999999975

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04175 Rap1 Rap1 subgroup

Probab=99.91  E-value=1.9e-24  Score=178.22  Aligned_cols=115  Identities=17%  Similarity=0.132  Sum_probs=92.5

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+++|||+|++.++.+|..++++++++++|+|+++          ..++++...++..+.+.....+.|++|++||+|
T Consensus        48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  117 (164)
T cd04175          48 QCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITA----------QSTFNDLQDLREQILRVKDTEDVPMILVGNKCD  117 (164)
T ss_pred             EEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence            4678899999999999999999999999999999998          788888888888887655557899999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +..++.........+.   ...++.++++||++|.|+.++|.|+.+.+
T Consensus       118 l~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l  162 (164)
T cd04175         118 LEDERVVGKEQGQNLA---RQWGCAFLETSAKAKINVNEIFYDLVRQI  162 (164)
T ss_pred             chhccEEcHHHHHHHH---HHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            8754322211111121   12346899999999999999999998765

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04136 Rap_like Rap-like subfamily

Probab=99.91  E-value=1.9e-24  Score=177.58  Aligned_cols=115  Identities=16%  Similarity=0.133  Sum_probs=90.1

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+++||++|++.++.+|..|+++++++++|+|+++          ..++++...+++.+.......+.|++|++||+|
T Consensus        48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  117 (163)
T cd04136          48 QCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITS----------QSSFNDLQDLREQILRVKDTENVPMVLVGNKCD  117 (163)
T ss_pred             EEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence            3678899999999999999999999999999999998          788888888888876644446789999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +..++....+....+.   ...++.++++||++|.|+.++|+++.+.+
T Consensus       118 l~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         118 LEDERVVSREEGQALA---RQWGCPFYETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             ccccceecHHHHHHHH---HHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence            8653211111111111   11236789999999999999999998765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.91  E-value=4.8e-24  Score=179.31  Aligned_cols=121  Identities=22%  Similarity=0.329  Sum_probs=93.7

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      +++.+.+|||+|++.++.+|..++++++++|+|+|+++          ..++.++..++..+.......+.|++|++||+
T Consensus        50 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~  119 (183)
T cd04152          50 KGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVD----------VERMEEAKTELHKITRFSENQGVPVLVLANKQ  119 (183)
T ss_pred             CceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhhhhcCCCcEEEEEECc
Confidence            45789999999999999999999999999999999998          67788888787777654444578999999999


Q ss_pred             CcccccccCCcccccC--cCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         249 DLFQEKITKSPLTVCF--PEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f--~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |+... ....++....  .+......++++++||++|+|+.++|++|.+.+...
T Consensus       120 D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~  172 (183)
T cd04152         120 DLPNA-LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKR  172 (183)
T ss_pred             Ccccc-CCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHH
Confidence            98653 2222222211  111122346789999999999999999999988643

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd00879 Sar1 Sar1 subfamily

Probab=99.91  E-value=3.2e-24  Score=181.18  Aligned_cols=129  Identities=22%  Similarity=0.349  Sum_probs=102.6

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      ||.|.....+.+++..+.+||++|+..++..|..++++++++++|+|+++          ..++.++..++..++.....
T Consensus        49 ~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~----------~~s~~~~~~~~~~i~~~~~~  118 (190)
T cd00879          49 PTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAAD----------PERFQESKEELDSLLSDEEL  118 (190)
T ss_pred             CccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCc----------HHHHHHHHHHHHHHHcCccc
Confidence            44555556677788999999999999999999999999999999999998          67888888899998876556


Q ss_pred             CCCcEEEEeecCCcccccccCCcccccCcCCC------------CCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYT------------DQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~------------~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      .+.|+++++||+|+... +...++.+.+..+.            ..+.+.+++|||++|+|+.++|+|+.+.
T Consensus       119 ~~~pvivv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         119 ANVPFLILGNKIDLPGA-VSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             cCCCEEEEEeCCCCCCC-cCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence            77999999999998642 33334444332211            1244678999999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>KOG0086|consensus

Probab=99.91  E-value=2e-24  Score=168.33  Aligned_cols=131  Identities=17%  Similarity=0.179  Sum_probs=101.0

Q ss_pred             eeecceeE--EEEEe--cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318         156 VKTTGIIE--THFTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC  231 (313)
Q Consensus       156 ~~T~g~~~--~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~  231 (313)
                      ..|+|+..  .-+.+  +.++++||||+||+++|+....||+++.+.++|+|+++          ..++.+.-.|+...-
T Consensus        39 sHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Ts----------rdsfnaLtnWL~DaR  108 (214)
T KOG0086|consen   39 SHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS----------RDSFNALTNWLTDAR  108 (214)
T ss_pred             cceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccc----------hhhHHHHHHHHHHHH
Confidence            35666433  22333  45899999999999999999999999999999999998          677776666666652


Q ss_pred             hCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      . ....++.++|++||.|+..++-........|.   ..+.+-+++|||.+|+||++.|-....+|+.+
T Consensus       109 ~-lAs~nIvviL~GnKkDL~~~R~VtflEAs~Fa---qEnel~flETSa~TGeNVEEaFl~c~~tIl~k  173 (214)
T KOG0086|consen  109 T-LASPNIVVILCGNKKDLDPEREVTFLEASRFA---QENELMFLETSALTGENVEEAFLKCARTILNK  173 (214)
T ss_pred             h-hCCCcEEEEEeCChhhcChhhhhhHHHHHhhh---cccceeeeeecccccccHHHHHHHHHHHHHHH
Confidence            2 23467889999999999876543333333343   44678899999999999999999999998855

>KOG0072|consensus

Probab=99.91  E-value=1.5e-25  Score=172.99  Aligned_cols=134  Identities=20%  Similarity=0.293  Sum_probs=117.3

Q ss_pred             eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      ..||+|++...+++++.++++||.+||.+.|..|.-||++++++|||||.+|          ..++.-+...|-.++..+
T Consensus        46 tkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd----------~dris~a~~el~~mL~E~  115 (182)
T KOG0072|consen   46 TKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSD----------RDRISIAGVELYSMLQEE  115 (182)
T ss_pred             cCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccc----------hhhhhhhHHHHHHHhccH
Confidence            3699999999999999999999999999999999999999999999999999          889999999999999999


Q ss_pred             CCCCCcEEEEeecCCcccccccCCcccc--cCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         235 WFMDTSIILFLNKNDLFQEKITKSPLTV--CFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~--~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      .++++-++|++||+|.... +...+...  .++.. +++.+.++.+||.+|+|++++++|+.+.+.++
T Consensus       116 eLq~a~llv~anKqD~~~~-~t~~E~~~~L~l~~L-k~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  116 ELQHAKLLVFANKQDYSGA-LTRSEVLKMLGLQKL-KDRIWQIVKTSAVKGEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             hhcCceEEEEeccccchhh-hhHHHHHHHhChHHH-hhheeEEEeeccccccCCcHHHHHHHHHHhcc
Confidence            9999999999999998774 33333222  22333 56779999999999999999999999988654

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.91  E-value=3.4e-24  Score=177.05  Aligned_cols=126  Identities=17%  Similarity=0.303  Sum_probs=98.6

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|+....+..+++++.+||++|+..++.+|..++++++++|||+|+++          ..++.++..++..+.... 
T Consensus        29 ~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~----------~~s~~~~~~~l~~~~~~~-   97 (164)
T cd04162          29 VPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD----------SERLPLARQELHQLLQHP-   97 (164)
T ss_pred             cccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCC-
Confidence            355566555667788999999999999999999999999999999999998          678888888888886543 


Q ss_pred             CCCCcEEEEeecCCcccccccCCccccc--CcCCCCCCCeEEEEeeccc------CcCHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVC--FPEYTDQKEIYTHFTCATD------TSNIQFVFDAVT  294 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~--f~~~~~~~~~~~~~tSA~~------~~~v~~~f~~i~  294 (313)
                       .++|+++|+||+|+..++ ....+...  ...+...+++++++|||++      ++||.++|+.+.
T Consensus        98 -~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~  162 (164)
T cd04162          98 -PDLPLVVLANKQDLPAAR-SVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLI  162 (164)
T ss_pred             -CCCcEEEEEeCcCCcCCC-CHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence             579999999999987643 21221111  2233344678889999888      999999998765

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04151 Arl1 Arl1 subfamily

Probab=99.91  E-value=4.6e-24  Score=174.89  Aligned_cols=127  Identities=20%  Similarity=0.341  Sum_probs=98.4

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      ||+|+....+++++.++++||++|++.++..|..++++++++|+|+|+++          ..++.....++..+++....
T Consensus        29 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~   98 (158)
T cd04151          29 PTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTD----------RDRLGTAKEELHAMLEEEEL   98 (158)
T ss_pred             CccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchhh
Confidence            45666666677788999999999999999999999999999999999998          56677777777777665555


Q ss_pred             CCCcEEEEeecCCcccccccCCcccccCc--CCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKITKSPLTVCFP--EYTDQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~--~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      .+.|+++++||+|+.++. ...++...+.  .. ...++.++++||++|.|+.++|+|+.+
T Consensus        99 ~~~piiiv~nK~Dl~~~~-~~~~i~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151          99 KGAVLLVFANKQDMPGAL-SEAEISEKLGLSEL-KDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             cCCcEEEEEeCCCCCCCC-CHHHHHHHhCcccc-CCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            679999999999986532 1122222221  11 234567999999999999999999975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04122 Rab14 Rab14 subfamily

Probab=99.91  E-value=5.3e-24  Score=175.96  Aligned_cols=115  Identities=17%  Similarity=0.185  Sum_probs=91.7

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+++.+||++|++.++..|..++++++++|+|+|+++          ..+++....|+..+... ...+.|+++++||+|
T Consensus        50 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D  118 (166)
T cd04122          50 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDARNL-TNPNTVIFLIGNKAD  118 (166)
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcc
Confidence            4788999999999999999999999999999999998          78888888888776443 235689999999999


Q ss_pred             cccccccC-CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         250 LFQEKITK-SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       250 l~~~k~~~-~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      +..++... .+... +.   ...++.++++||++|.||.++|.++++.+.+
T Consensus       119 l~~~~~~~~~~~~~-~~---~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~  165 (166)
T cd04122         119 LEAQRDVTYEEAKQ-FA---DENGLLFLECSAKTGENVEDAFLETAKKIYQ  165 (166)
T ss_pred             cccccCcCHHHHHH-HH---HHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            87643221 22222 21   2245789999999999999999999988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.91  E-value=5.2e-24  Score=177.86  Aligned_cols=114  Identities=15%  Similarity=0.172  Sum_probs=84.4

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHH-HHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK-LFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~-~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      +.+++||++|++.++.+|..++++++++|+|+|+++          ..++++... |+..+...  ..++|++|++||+|
T Consensus        49 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~----------~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~D  116 (175)
T cd01874          49 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS----------PSSFENVKEKWVPEITHH--CPKTPFLLVGTQID  116 (175)
T ss_pred             EEEEEEECCCccchhhhhhhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHh
Confidence            788999999999999999999999999999999998          788888765 55555332  24689999999999


Q ss_pred             cccccccCCcccccC---------cCCCCC-CCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         250 LFQEKITKSPLTVCF---------PEYTDQ-KEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       250 l~~~k~~~~~l~~~f---------~~~~~~-~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      +.......+.+...-         ..+.+. +.+.+++|||++|.||.++|+.+.+.
T Consensus       117 l~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~  173 (175)
T cd01874         117 LRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILA  173 (175)
T ss_pred             hhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence            865321111110000         001011 23689999999999999999998774

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.91  E-value=6.2e-24  Score=178.34  Aligned_cols=114  Identities=15%  Similarity=0.167  Sum_probs=87.6

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHH-HHHHHHHHhCCCCCCCcEEEEeec
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIES-MKLFDSICNSKWFMDTSIILFLNK  247 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~-~~~~~~~~~~~~~~~~piilv~NK  247 (313)
                      ..+.+++|||+|++.++.+|..+|++++++|+|+|+++          ..++++. ..|+..+...  ..++|++|||||
T Consensus        51 ~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~----------~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK  118 (182)
T cd04172          51 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR----------PETLDSVLKKWKGEIQEF--CPNTKMLLVGCK  118 (182)
T ss_pred             EEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHH--CCCCCEEEEeEC
Confidence            34789999999999999999999999999999999998          7888887 4666665432  246899999999


Q ss_pred             CCccccc-------------ccCCcccccCcCCCCCCC-eEEEEeecccCcC-HHHHHHHHHHHHH
Q psy8318         248 NDLFQEK-------------ITKSPLTVCFPEYTDQKE-IYTHFTCATDTSN-IQFVFDAVTDVII  298 (313)
Q Consensus       248 ~Dl~~~k-------------~~~~~l~~~f~~~~~~~~-~~~~~tSA~~~~~-v~~~f~~i~~~i~  298 (313)
                      +|+....             +...+. ..+.   ...+ +.+++|||++|.| |.++|..+.+..+
T Consensus       119 ~DL~~~~~~~~~~~~~~~~~v~~~~~-~~~a---~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         119 SDLRTDLTTLVELSNHRQTPVSYDQG-ANMA---KQIGAATYIECSALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             hhhhcChhhHHHHHhcCCCCCCHHHH-HHHH---HHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence            9985420             111111 1121   2345 4799999999998 9999999988643

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.91  E-value=1e-23  Score=174.50  Aligned_cols=114  Identities=15%  Similarity=0.156  Sum_probs=92.2

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      +.+.+.+|||+|++.+..+|..++.+++++|+|+|+++          ..++.....|+..+....  .++|+++|+||+
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~  114 (166)
T cd00877          47 GKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTS----------RVTYKNVPNWHRDLVRVC--GNIPIVLCGNKV  114 (166)
T ss_pred             EEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC--CCCcEEEEEEch
Confidence            45789999999999999999999999999999999998          788888877888775543  279999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      |+..+.... . ...+.   ..+.+.+++|||++|.||.++|++|.+.+.+
T Consensus       115 Dl~~~~~~~-~-~~~~~---~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877         115 DIKDRKVKA-K-QITFH---RKKNLQYYEISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             hcccccCCH-H-HHHHH---HHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence            987432221 1 11122   2356789999999999999999999998865

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04126 Rab20 Rab20 subfamily

Probab=99.91  E-value=1.1e-23  Score=181.59  Aligned_cols=135  Identities=17%  Similarity=0.161  Sum_probs=99.4

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      ||+|.......++.+.+.+||++|++.++.+|..||++++++|+|+|+++          ..++.+...++..+... ..
T Consensus        30 ~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~----------~~Sf~~l~~~~~~l~~~-~~   98 (220)
T cd04126          30 STVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSN----------VQSLEELEDRFLGLTDT-AN   98 (220)
T ss_pred             CccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cC
Confidence            45554444444566789999999999999999999999999999999998          78888888888887653 34


Q ss_pred             CCCcEEEEeecCCccccc--------------------ccCCcccccCcCCC----------CCCCeEEEEeecccCcCH
Q psy8318         237 MDTSIILFLNKNDLFQEK--------------------ITKSPLTVCFPEYT----------DQKEIYTHFTCATDTSNI  286 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k--------------------~~~~~l~~~f~~~~----------~~~~~~~~~tSA~~~~~v  286 (313)
                      .++|++||+||+|+....                    +..++......+..          ....+.+++|||++|.||
T Consensus        99 ~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V  178 (220)
T cd04126          99 EDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNV  178 (220)
T ss_pred             CCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCH
Confidence            578999999999986510                    11111111111110          001257899999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy8318         287 QFVFDAVTDVIIKANL  302 (313)
Q Consensus       287 ~~~f~~i~~~i~~~~~  302 (313)
                      .++|.++.+.++...+
T Consensus       179 ~elf~~i~~~~~~~~~  194 (220)
T cd04126         179 DELFEYLFNLVLPLIL  194 (220)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999998886544

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0087|consensus

Probab=99.91  E-value=7.4e-24  Score=174.37  Aligned_cols=133  Identities=18%  Similarity=0.225  Sum_probs=109.6

Q ss_pred             eeecceeEE--EEEe--cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318         156 VKTTGIIET--HFTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC  231 (313)
Q Consensus       156 ~~T~g~~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~  231 (313)
                      .+|+|+...  .+.+  +-++.+||||+||+++|.....||+++.+++.|+|++.          ..+++....|+.++.
T Consensus        44 ksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr----------~~Tfenv~rWL~ELR  113 (222)
T KOG0087|consen   44 KSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITR----------RQTFENVERWLKELR  113 (222)
T ss_pred             ccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechh----------HHHHHHHHHHHHHHH
Confidence            578896544  3444  34889999999999999999999999999999999998          888998889999986


Q ss_pred             hCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318         232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANL  302 (313)
Q Consensus       232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~  302 (313)
                      .+ .-.+++++|||||+||...+....+-.+.|.+   ..++++++|||.++.||+++|..+...|.....
T Consensus       114 dh-ad~nivimLvGNK~DL~~lraV~te~~k~~Ae---~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs  180 (222)
T KOG0087|consen  114 DH-ADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAE---KEGLFFLETSALDATNVEKAFERVLTEIYKIVS  180 (222)
T ss_pred             hc-CCCCeEEEEeecchhhhhccccchhhhHhHHH---hcCceEEEecccccccHHHHHHHHHHHHHHHHH
Confidence            54 44689999999999997755455555555543   367899999999999999999999998876543

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.91  E-value=1.2e-23  Score=172.53  Aligned_cols=128  Identities=24%  Similarity=0.406  Sum_probs=98.4

Q ss_pred             eecceeEEEEEe-cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         157 KTTGIIETHFTF-KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       157 ~T~g~~~~~~~~-~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      ||+|+....+.. ++..+.+||++|++.++..|..++.+++++|||+|+++          ..++.++..++.+++....
T Consensus        29 ~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~----------~~~~~~~~~~~~~~~~~~~   98 (160)
T cd04156          29 PTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSD----------EARLDESQKELKHILKNEH   98 (160)
T ss_pred             CccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc----------HHHHHHHHHHHHHHHhchh
Confidence            445544444444 35789999999999999999999999999999999998          6788888889998887666


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccC--cCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f--~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      ..+.|++|++||+|+... ....++...+  ..+...+++.+++|||++|+||.++|++|.+
T Consensus        99 ~~~~piilv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156          99 IKGVPVVLLANKQDLPGA-LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             hcCCCEEEEEECcccccC-cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            678999999999998642 2222222221  2232335678899999999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04176 Rap2 Rap2 subgroup

Probab=99.91  E-value=7.1e-24  Score=174.49  Aligned_cols=114  Identities=17%  Similarity=0.137  Sum_probs=89.8

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      ..+++||++|++.++.+|..|+++++++|+|+|+++          ..++.+...|+..+.......+.|+++++||+|+
T Consensus        49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl  118 (163)
T cd04176          49 SVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVN----------QQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDL  118 (163)
T ss_pred             EEEEEEECCCcccccchHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            568899999999999999999999999999999998          7888888888888766544467999999999998


Q ss_pred             ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ..++.........+.   ...++.+++|||++|.|+.++|.++.+.+
T Consensus       119 ~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         119 ESEREVSSAEGRALA---EEWGCPFMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             hhcCccCHHHHHHHH---HHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence            653211111112221   11346789999999999999999998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04128 Spg1 Spg1p

Probab=99.91  E-value=9.5e-24  Score=177.36  Aligned_cols=124  Identities=19%  Similarity=0.257  Sum_probs=91.5

Q ss_pred             EEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318         165 HFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII  242 (313)
Q Consensus       165 ~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii  242 (313)
                      .+..++  +.+++||++|++.++.+|..++++++++++|+|+++          ..++++...|+..+.... ....| +
T Consensus        41 ~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~----------~~s~~~i~~~~~~~~~~~-~~~~p-i  108 (182)
T cd04128          41 TISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTR----------KSTLNSIKEWYRQARGFN-KTAIP-I  108 (182)
T ss_pred             EEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhC-CCCCE-E
Confidence            344443  789999999999999999999999999999999998          788888888888876532 23467 6


Q ss_pred             EEeecCCcccccc--cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         243 LFLNKNDLFQEKI--TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       243 lv~NK~Dl~~~k~--~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +|+||+|+..+.-  ....+.+...++....++.+++|||++|.||+++|+++.+.+.+.
T Consensus       109 lVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~~  168 (182)
T cd04128         109 LVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFDL  168 (182)
T ss_pred             EEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            7899999853210  000111111111122456789999999999999999999988753

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PTZ00369 Ras-like protein; Provisional

Probab=99.91  E-value=9e-24  Score=178.58  Aligned_cols=119  Identities=17%  Similarity=0.085  Sum_probs=92.9

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      +.+.+++|||+|++.++.+|..|+++++++|+|+|+++          ..++++...|+..+.+.....+.|+++++||+
T Consensus        51 ~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~----------~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~  120 (189)
T PTZ00369         51 ETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITS----------RSSFEEIASFREQILRVKDKDRVPMILVGNKC  120 (189)
T ss_pred             EEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            34678999999999999999999999999999999998          77888888888877654444578999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |+..+..........+.   ...++.+++|||++|.||.++|.|+.+.+...
T Consensus       121 Dl~~~~~i~~~~~~~~~---~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~  169 (189)
T PTZ00369        121 DLDSERQVSTGEGQELA---KSFGIPFLETSAKQRVNVDEAFYELVREIRKY  169 (189)
T ss_pred             ccccccccCHHHHHHHH---HHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence            98643211111111111   12346789999999999999999999988654

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.91  E-value=1.2e-23  Score=182.54  Aligned_cols=118  Identities=16%  Similarity=0.205  Sum_probs=90.1

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHH-HHHHHHHHhCCCCCCCcEEEEeec
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIES-MKLFDSICNSKWFMDTSIILFLNK  247 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~-~~~~~~~~~~~~~~~~piilv~NK  247 (313)
                      ..+.+++|||+|++.++.++..||++++++|+|+|+++          ..+++.+ ..|+..+...  ..+.|++||+||
T Consensus        59 ~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~----------~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK  126 (232)
T cd04174          59 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR----------PETVDSALKKWKAEIMDY--CPSTRILLIGCK  126 (232)
T ss_pred             EEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCC----------hHHHHHHHHHHHHHHHHh--CCCCCEEEEEEC
Confidence            34789999999999999999999999999999999999          7888875 4566666432  246899999999


Q ss_pred             CCcccc-------------cccCCcccccCcCCCCCCCe-EEEEeecccCc-CHHHHHHHHHHHHHHhhh
Q psy8318         248 NDLFQE-------------KITKSPLTVCFPEYTDQKEI-YTHFTCATDTS-NIQFVFDAVTDVIIKANL  302 (313)
Q Consensus       248 ~Dl~~~-------------k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~-~v~~~f~~i~~~i~~~~~  302 (313)
                      +|+...             .+...+. +.+.   ...++ .+++|||++|+ ||+++|..+...+++..+
T Consensus       127 ~DL~~~~~~~~~l~~~~~~~Vs~~e~-~~~a---~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~~  192 (232)
T cd04174         127 TDLRTDLSTLMELSNQKQAPISYEQG-CALA---KQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNKLS  192 (232)
T ss_pred             cccccccchhhhhccccCCcCCHHHH-HHHH---HHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence            998542             1111111 1121   33455 58999999998 899999999998876543

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.90  E-value=1.1e-23  Score=172.44  Aligned_cols=113  Identities=15%  Similarity=0.085  Sum_probs=89.2

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+++||++|++.++.+|..|+++++++++|+|+++          ..++.+...++..+.......+.|++|++||+|+
T Consensus        49 ~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~----------~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl  118 (162)
T cd04138          49 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINS----------RKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDL  118 (162)
T ss_pred             EEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            568899999999999999999999999999999998          6777777777777765444467899999999998


Q ss_pred             ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ........+.....    ...++.++++||++|.|+.++|+++.+.+
T Consensus       119 ~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         119 AARTVSSRQGQDLA----KSYGIPYIETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             ccceecHHHHHHHH----HHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence            76322222222211    22356789999999999999999998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.90  E-value=1.1e-23  Score=175.65  Aligned_cols=113  Identities=19%  Similarity=0.222  Sum_probs=84.8

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHH-HHHHHHhCCCCCCCcEEEEeec
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK-LFDSICNSKWFMDTSIILFLNK  247 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~-~~~~~~~~~~~~~~piilv~NK  247 (313)
                      +.+.+++|||+|++.++.+|..++++++++|+|+|+++          +.++.+... |+..+...  ..++|++||+||
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~sf~~~~~~~~~~~~~~--~~~~piilvgnK  114 (174)
T cd01871          47 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS----------PASFENVRAKWYPEVRHH--CPNTPIILVGTK  114 (174)
T ss_pred             EEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEeeC
Confidence            34788999999999999999999999999999999998          788888764 55544332  247999999999


Q ss_pred             CCcccccccCCcc-------------cccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         248 NDLFQEKITKSPL-------------TVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       248 ~Dl~~~k~~~~~l-------------~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      +|+...+.....+             .+...++   +.+.+++|||++|+||.++|+.+.+.
T Consensus       115 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         115 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI---GAVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             hhhccChhhHHHHhhccCCCCCHHHHHHHHHHc---CCcEEEEecccccCCHHHHHHHHHHh
Confidence            9986432111111             1111111   22478999999999999999998763

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04117 Rab15 Rab15 subfamily

Probab=99.90  E-value=1.8e-23  Score=172.10  Aligned_cols=118  Identities=17%  Similarity=0.152  Sum_probs=91.9

Q ss_pred             EEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318         165 HFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII  242 (313)
Q Consensus       165 ~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii  242 (313)
                      .+.+++  +.+++||++|++.+..+|..++.+++++++|+|+++          .+++++...|++.+.+. ...+.|++
T Consensus        41 ~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~sf~~~~~~~~~~~~~-~~~~~~ii  109 (161)
T cd04117          41 TIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISS----------ERSYQHIMKWVSDVDEY-APEGVQKI  109 (161)
T ss_pred             EEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHh-CCCCCeEE
Confidence            444443  678999999999999999999999999999999998          78999988888877543 33578999


Q ss_pred             EEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         243 LFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       243 lv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      +++||.|+..++....+....+.+   ..++.+++|||++|.||+++|+||.+.
T Consensus       110 lvgnK~Dl~~~~~v~~~~~~~~~~---~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         110 LIGNKADEEQKRQVGDEQGNKLAK---EYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             EEEECcccccccCCCHHHHHHHHH---HcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            999999986543222222222221   234678999999999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>KOG0079|consensus

Probab=99.90  E-value=6.8e-24  Score=164.49  Aligned_cols=133  Identities=19%  Similarity=0.277  Sum_probs=112.4

Q ss_pred             eeeecce--eEEEEEec--CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH
Q psy8318         155 RVKTTGI--IETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI  230 (313)
Q Consensus       155 ~~~T~g~--~~~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~  230 (313)
                      +..|+|+  ...++++.  .++++|||++||+++|.+...||++.++++.|+|+++          ..++.....|++++
T Consensus        37 YitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn----------~ESF~Nv~rWLeei  106 (198)
T KOG0079|consen   37 YITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTN----------GESFNNVKRWLEEI  106 (198)
T ss_pred             eEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcc----------hhhhHhHHHHHHHH
Confidence            5677884  45566663  4899999999999999999999999999999999999          78999999999998


Q ss_pred             HhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318         231 CNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANL  302 (313)
Q Consensus       231 ~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~  302 (313)
                      -++.  ...|-+|||||.|..++++...+-...|.   ...++.+|+|||++.+|++..|.-|.+++++.++
T Consensus       107 ~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A---~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k~  173 (198)
T KOG0079|consen  107 RNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFA---LQMGIELFETSAKENENVEAMFHCITKQVLQAKL  173 (198)
T ss_pred             HhcC--ccccceecccCCCCccceeeehHHHHHHH---HhcCchheehhhhhcccchHHHHHHHHHHHHHHH
Confidence            6542  36899999999999988777665444444   3468899999999999999999999999987763

>KOG0098|consensus

Probab=99.90  E-value=9.3e-24  Score=170.19  Aligned_cols=131  Identities=16%  Similarity=0.178  Sum_probs=108.4

Q ss_pred             eeccee----EEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318         157 KTTGII----ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN  232 (313)
Q Consensus       157 ~T~g~~----~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~  232 (313)
                      .|+|+.    ..+++-+.+++++|||+||+++|+....||+++.++|+|+|++.          ..+|...-.|++.+..
T Consensus        37 ~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~----------r~sF~hL~~wL~D~rq  106 (216)
T KOG0098|consen   37 LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITR----------RESFNHLTSWLEDARQ  106 (216)
T ss_pred             ceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccc----------hhhHHHHHHHHHHHHH
Confidence            567753    33444467999999999999999999999999999999999998          7888877788888765


Q ss_pred             CCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         233 SKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       233 ~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      . ...+..|+|++||+|+...+....+..+.|.   +.+++-+++|||++++||++.|......|.+..
T Consensus       107 ~-~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA---~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~  171 (216)
T KOG0098|consen  107 H-SNENMVIMLIGNKSDLEARREVSKEEGEAFA---REHGLIFMETSAKTAENVEEAFINTAKEIYRKI  171 (216)
T ss_pred             h-cCCCcEEEEEcchhhhhccccccHHHHHHHH---HHcCceeehhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            4 2468899999999999876655555556665   347888899999999999999999999998663

>cd04144 Ras2 Ras2 subfamily

Probab=99.90  E-value=1.4e-23  Score=177.52  Aligned_cols=120  Identities=13%  Similarity=0.102  Sum_probs=91.6

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC--CCCCCcEEEEeec
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK--WFMDTSIILFLNK  247 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~--~~~~~piilv~NK  247 (313)
                      .+.+++|||+|++.++..|..||++++++|+|+|+++          .++++....++..+....  ...+.|++||+||
T Consensus        46 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK  115 (190)
T cd04144          46 PCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITS----------RSTFERVERFREQIQRVKDESAADVPIMIVGNK  115 (190)
T ss_pred             EEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEC
Confidence            3679999999999999999999999999999999998          777777777777665432  1357899999999


Q ss_pred             CCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318         248 NDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANL  302 (313)
Q Consensus       248 ~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~  302 (313)
                      +|+..++.........+.   ...++.++++||++|.||.++|+++.+.+..+..
T Consensus       116 ~Dl~~~~~v~~~~~~~~~---~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~  167 (190)
T cd04144         116 CDKVYEREVSTEEGAALA---RRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQ  167 (190)
T ss_pred             hhccccCccCHHHHHHHH---HHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence            998643221111111121   2235678999999999999999999998876543

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0080|consensus

Probab=99.90  E-value=9.3e-24  Score=165.98  Aligned_cols=130  Identities=18%  Similarity=0.212  Sum_probs=99.7

Q ss_pred             eeccee--EEEEEe--cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318         157 KTTGII--ETHFTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN  232 (313)
Q Consensus       157 ~T~g~~--~~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~  232 (313)
                      .|+|+.  ...+.+  ...++.+|||+||++||.+.+.||+++.++|.|+|++.          +.+|...-.|+.++-.
T Consensus        42 ~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~----------Rdtf~kLd~W~~Eld~  111 (209)
T KOG0080|consen   42 TTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTS----------RDTFVKLDIWLKELDL  111 (209)
T ss_pred             ceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccc----------hhhHHhHHHHHHHHHh
Confidence            458853  344444  45889999999999999999999999999999999998          6666666556655533


Q ss_pred             CCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         233 SKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       233 ~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      -....++-.+||+||+|...++....+..-.|.   +++++-++++||++.+||+..|+.+...|++
T Consensus       112 Ystn~diikmlVgNKiDkes~R~V~reEG~kfA---r~h~~LFiE~SAkt~~~V~~~FeelveKIi~  175 (209)
T KOG0080|consen  112 YSTNPDIIKMLVGNKIDKESERVVDREEGLKFA---RKHRCLFIECSAKTRENVQCCFEELVEKIIE  175 (209)
T ss_pred             hcCCccHhHhhhcccccchhcccccHHHHHHHH---HhhCcEEEEcchhhhccHHHHHHHHHHHHhc
Confidence            333356788999999997754443333222333   5578899999999999999999999998875

>cd01865 Rab3 Rab3 subfamily

Probab=99.90  E-value=2.4e-23  Score=171.96  Aligned_cols=114  Identities=18%  Similarity=0.261  Sum_probs=90.0

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+++||++|++.++..|..++++++++++|+|+++          ..++++...|+..+... ...++|+++++||+|
T Consensus        49 ~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~D  117 (165)
T cd01865          49 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN----------EESFNAVQDWSTQIKTY-SWDNAQVILVGNKCD  117 (165)
T ss_pred             EEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcc
Confidence            4789999999999999999999999999999999998          78888888888776432 335789999999999


Q ss_pred             cccccccC-CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         250 LFQEKITK-SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       250 l~~~k~~~-~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      +..++... ....+ +.   ...++.++++||++|.|+.++|+++.+.+.
T Consensus       118 l~~~~~~~~~~~~~-~~---~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~  163 (165)
T cd01865         118 MEDERVVSSERGRQ-LA---DQLGFEFFEASAKENINVKQVFERLVDIIC  163 (165)
T ss_pred             cCcccccCHHHHHH-HH---HHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            86543221 11111 11   123467899999999999999999998764

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.90  E-value=2.9e-23  Score=170.92  Aligned_cols=116  Identities=18%  Similarity=0.111  Sum_probs=91.3

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+.+||++|++.++..|..++++++++++|+|+++          ..++++...++..+.......+.|+++++||+|
T Consensus        47 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~D  116 (164)
T smart00173       47 VCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITD----------RQSFEEIKKFREQILRVKDRDDVPIVLVGNKCD  116 (164)
T ss_pred             EEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence            4788999999999999999999999999999999998          778888888877776654445789999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      +..++.........+.   ...+..++++||++|.|+.++|+++.+.+.
T Consensus       117 l~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      117 LESERVVSTEEGKELA---RQWGCPFLETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             ccccceEcHHHHHHHH---HHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence            8653221111111121   113467899999999999999999998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04111 Rab39 Rab39 subfamily

Probab=99.90  E-value=3.6e-23  Score=177.90  Aligned_cols=117  Identities=13%  Similarity=0.146  Sum_probs=94.7

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+++||++|++.+...|..++++++++|+|+|+++          ..++++...|+..+........+|++|++||.|+
T Consensus        52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl  121 (211)
T cd04111          52 IKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITN----------RESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL  121 (211)
T ss_pred             EEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccc
Confidence            689999999999999999999999999999999998          7889999888888876544456889999999998


Q ss_pred             ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ...+....+....+.   ...++.++++||++|+||.++|++|.+.+..+
T Consensus       122 ~~~~~v~~~~~~~~~---~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~  168 (211)
T cd04111         122 ESQRQVTREEAEKLA---KDLGMKYIETSARTGDNVEEAFELLTQEIYER  168 (211)
T ss_pred             ccccccCHHHHHHHH---HHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            753222211222222   22457899999999999999999999988765

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.90  E-value=2.1e-23  Score=177.47  Aligned_cols=115  Identities=15%  Similarity=0.142  Sum_probs=93.5

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      +.+++++|||+|++.++.+|..||++++++|+|+|+++          ..+++....|...+...  ..++|++||+||+
T Consensus        42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~----------~~S~~~i~~w~~~i~~~--~~~~piilvgNK~  109 (200)
T smart00176       42 GPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTA----------RVTYKNVPNWHRDLVRV--CENIPIVLCGNKV  109 (200)
T ss_pred             EEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCC----------hHHHHHHHHHHHHHHHh--CCCCCEEEEEECc
Confidence            45899999999999999999999999999999999999          78888888887777653  2479999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |+..+.+....+ + +.   ...++.+++|||++|.||.++|.|+.+.+.+.
T Consensus       110 Dl~~~~v~~~~~-~-~~---~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176      110 DVKDRKVKAKSI-T-FH---RKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             ccccccCCHHHH-H-HH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            986532222111 1 11   33567899999999999999999999988654

Ran is involved in the active transport of proteins through nuclear pores.

>cd04131 Rnd Rnd subfamily

Probab=99.90  E-value=3.7e-23  Score=173.13  Aligned_cols=114  Identities=15%  Similarity=0.211  Sum_probs=86.9

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHH-HHHHHHHHhCCCCCCCcEEEEeec
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIES-MKLFDSICNSKWFMDTSIILFLNK  247 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~-~~~~~~~~~~~~~~~~piilv~NK  247 (313)
                      +.+.+++|||+|++.++.++..+|++++++|+|+|+++          ..++++. ..|+..+...  ..++|++|||||
T Consensus        47 ~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~----------~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK  114 (178)
T cd04131          47 QRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISR----------PETLDSVLKKWRGEIQEF--CPNTKVLLVGCK  114 (178)
T ss_pred             EEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCC----------hhhHHHHHHHHHHHHHHH--CCCCCEEEEEEC
Confidence            34789999999999999999999999999999999998          8888886 4666665432  247899999999


Q ss_pred             CCcccc-------------cccCCcccccCcCCCCCCCe-EEEEeecccCcC-HHHHHHHHHHHHH
Q psy8318         248 NDLFQE-------------KITKSPLTVCFPEYTDQKEI-YTHFTCATDTSN-IQFVFDAVTDVII  298 (313)
Q Consensus       248 ~Dl~~~-------------k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~-v~~~f~~i~~~i~  298 (313)
                      +|+..+             .+...+ ...+.   ...++ .+++|||++|+| |.++|..+.+..+
T Consensus       115 ~DL~~~~~~~~~~~~~~~~~v~~~e-~~~~a---~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         115 TDLRTDLSTLMELSHQRQAPVSYEQ-GCAIA---KQLGAEIYLECSAFTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             hhhhcChhHHHHHHhcCCCCCCHHH-HHHHH---HHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence            998542             011111 11121   23454 689999999995 9999999988544

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04109 Rab28 Rab28 subfamily

Probab=99.90  E-value=3.1e-23  Score=178.84  Aligned_cols=118  Identities=14%  Similarity=0.247  Sum_probs=91.1

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC--CCCCcEEEEeec
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW--FMDTSIILFLNK  247 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~--~~~~piilv~NK  247 (313)
                      .+.+++||++|++.++.+|..++++++++|+|+|+++          ..+++....|+..+.....  ..++|+++|+||
T Consensus        49 ~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~----------~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK  118 (215)
T cd04109          49 NVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTN----------SQSFENLEDWYSMVRKVLKSSETQPLVVLVGNK  118 (215)
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhccccCCCceEEEEEEC
Confidence            4789999999999999999999999999999999998          7788877777777654321  245789999999


Q ss_pred             CCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         248 NDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       248 ~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      .|+...+....+....+.   ...++.++++||++|+||.++|+++.+.+...
T Consensus       119 ~DL~~~~~v~~~~~~~~~---~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~  168 (215)
T cd04109         119 TDLEHNRTVKDDKHARFA---QANGMESCLVSAKTGDRVNLLFQQLAAELLGV  168 (215)
T ss_pred             cccccccccCHHHHHHHH---HHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            998743211111111222   22356789999999999999999999998764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>KOG0093|consensus

Probab=99.90  E-value=1.6e-23  Score=162.32  Aligned_cols=137  Identities=19%  Similarity=0.225  Sum_probs=103.4

Q ss_pred             eeeecceeEEEEEe----cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH
Q psy8318         155 RVKTTGIIETHFTF----KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI  230 (313)
Q Consensus       155 ~~~T~g~~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~  230 (313)
                      ...|+|+....-++    +.+++++|||+||+++|.+...||+++.++|+++|+++          ..++.....|... 
T Consensus        50 fvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitN----------eeSf~svqdw~tq-  118 (193)
T KOG0093|consen   50 FVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN----------EESFNSVQDWITQ-  118 (193)
T ss_pred             eeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCC----------HHHHHHHHHHHHH-
Confidence            36777865332222    45899999999999999999999999999999999998          3344333333333 


Q ss_pred             HhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhhhc
Q psy8318         231 CNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKDC  305 (313)
Q Consensus       231 ~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~~~  305 (313)
                      +..-...++|+||++||||+..+++...+-...|.+   ..++.++++||+.+.||..+|+.+.+.|-++...++
T Consensus       119 Iktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~---~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kmsesl  190 (193)
T KOG0093|consen  119 IKTYSWDNAQVILVGNKCDMDSERVISHERGRQLAD---QLGFEFFETSAKENINVKQVFERLVDIICDKMSESL  190 (193)
T ss_pred             heeeeccCceEEEEecccCCccceeeeHHHHHHHHH---HhChHHhhhcccccccHHHHHHHHHHHHHHHhhhhh
Confidence            333344689999999999999887766554444432   257789999999999999999999999877655443

>cd04110 Rab35 Rab35 subfamily

Probab=99.90  E-value=7.9e-23  Score=174.22  Aligned_cols=115  Identities=20%  Similarity=0.321  Sum_probs=91.5

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+.+||++|++.++.+|..++++++++|+|+|+++          ..++++...|+..+...  ....|++||+||+|+
T Consensus        55 ~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~----------~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl  122 (199)
T cd04110          55 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTN----------GESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDD  122 (199)
T ss_pred             EEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHh--CCCCCEEEEEECccc
Confidence            678999999999999999999999999999999998          78888888888877543  246899999999998


Q ss_pred             ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ...+.........+.   ...++.++++||++|.||.++|+++.+.++..
T Consensus       123 ~~~~~~~~~~~~~~~---~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~  169 (199)
T cd04110         123 PERKVVETEDAYKFA---GQMGISLFETSAKENINVEEMFNCITELVLRA  169 (199)
T ss_pred             ccccccCHHHHHHHH---HHcCCEEEEEECCCCcCHHHHHHHHHHHHHHh
Confidence            653221111111111   12346789999999999999999999988764

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04134 Rho3 Rho3 subfamily

Probab=99.89  E-value=4.3e-23  Score=174.44  Aligned_cols=119  Identities=12%  Similarity=0.198  Sum_probs=88.7

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .+.+++||++|++.++.+|..+|++++++|+|+|+++          .++++... .|+..+...  ..+.|++||+||+
T Consensus        47 ~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~----------~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~  114 (189)
T cd04134          47 HIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDS----------PDSLENVESKWLGEIREH--CPGVKLVLVALKC  114 (189)
T ss_pred             EEEEEEEECCCChhccccccccccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEECh
Confidence            4789999999999999999999999999999999999          77887765 366665432  2478999999999


Q ss_pred             CcccccccCC--------ccc--ccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         249 DLFQEKITKS--------PLT--VCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       249 Dl~~~k~~~~--------~l~--~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |+........        .+.  +..........+.+++|||++|.||.++|+|+.+.++..
T Consensus       115 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~  176 (189)
T cd04134         115 DLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALNV  176 (189)
T ss_pred             hhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhcc
Confidence            9875421110        000  000000011236789999999999999999999988754

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0095|consensus

Probab=99.89  E-value=1.7e-23  Score=162.49  Aligned_cols=132  Identities=19%  Similarity=0.273  Sum_probs=107.4

Q ss_pred             eeecce--eEEEEEec--CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318         156 VKTTGI--IETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC  231 (313)
Q Consensus       156 ~~T~g~--~~~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~  231 (313)
                      ..|+|+  ...+++++  .+++++|||+||+++|+....||+.++++|+|+|++.       .++...+.+++...++..
T Consensus        37 gatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydisc-------qpsfdclpewlreie~ya  109 (213)
T KOG0095|consen   37 GATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC-------QPSFDCLPEWLREIEQYA  109 (213)
T ss_pred             CceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEeccc-------CcchhhhHHHHHHHHHHh
Confidence            467774  45566664  4899999999999999999999999999999999997       344677788888887776


Q ss_pred             hCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      ++    ++--|||+||.|+.+++-.+..+.+.|.+.   ..+|+.+|||++.+||+.+|..++-.+....
T Consensus       110 n~----kvlkilvgnk~d~~drrevp~qigeefs~~---qdmyfletsakea~nve~lf~~~a~rli~~a  172 (213)
T KOG0095|consen  110 NN----KVLKILVGNKIDLADRREVPQQIGEEFSEA---QDMYFLETSAKEADNVEKLFLDLACRLISEA  172 (213)
T ss_pred             hc----ceEEEeeccccchhhhhhhhHHHHHHHHHh---hhhhhhhhcccchhhHHHHHHHHHHHHHHHH
Confidence            64    456799999999988766666666666644   6789999999999999999999998887543

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.89  E-value=6.7e-23  Score=169.23  Aligned_cols=115  Identities=20%  Similarity=0.253  Sum_probs=90.6

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+++||++|++.+...|..++++++++|+|+|+++          ..++.+...|+..+... ...+.|+++++||+|
T Consensus        50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~l~~~~~~~~~~-~~~~~~~iiv~nK~D  118 (166)
T cd01869          50 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLQEIDRY-ASENVNKLLVGNKCD  118 (166)
T ss_pred             EEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcC----------HHHHHhHHHHHHHHHHh-CCCCCcEEEEEEChh
Confidence            3678999999999999999999999999999999998          77888888888776442 234689999999999


Q ss_pred             cccccccC-CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         250 LFQEKITK-SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       250 l~~~k~~~-~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      +..++... ..... +.   ...++.++++||++|.||.++|.++.+.+.+
T Consensus       119 l~~~~~~~~~~~~~-~~---~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  165 (166)
T cd01869         119 LTDKRVVDYSEAQE-FA---DELGIPFLETSAKNATNVEQAFMTMAREIKK  165 (166)
T ss_pred             cccccCCCHHHHHH-HH---HHcCCeEEEEECCCCcCHHHHHHHHHHHHHh
Confidence            86543221 11111 11   2245679999999999999999999998753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.89  E-value=5.2e-23  Score=168.95  Aligned_cols=115  Identities=17%  Similarity=0.225  Sum_probs=86.2

Q ss_pred             EEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318         165 HFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII  242 (313)
Q Consensus       165 ~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii  242 (313)
                      .+.+++  +.+.+||++|++.     ..++++++++++|+|+++          ..+++++..|+..+.......++|++
T Consensus        39 ~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~----------~~sf~~~~~~~~~i~~~~~~~~~pii  103 (158)
T cd04103          39 EVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLEN----------EASFQTVYNLYHQLSSYRNISEIPLI  103 (158)
T ss_pred             EEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence            344444  6799999999964     357789999999999999          89999999999988776555679999


Q ss_pred             EEeecCCcccc--cccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         243 LFLNKNDLFQE--KITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       243 lv~NK~Dl~~~--k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      |++||.|+...  +.........+.+  ..+.+.+++|||++|.||+++|+++.+.
T Consensus       104 lvgnK~Dl~~~~~~~v~~~~~~~~~~--~~~~~~~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103         104 LVGTQDAISESNPRVIDDARARQLCA--DMKRCSYYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             EEeeHHHhhhcCCcccCHHHHHHHHH--HhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence            99999998532  1111111111211  1135789999999999999999998764

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04116 Rab9 Rab9 subfamily

Probab=99.89  E-value=7.1e-23  Score=169.75  Aligned_cols=115  Identities=14%  Similarity=0.161  Sum_probs=88.6

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC---CCCCCcEEEEe
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK---WFMDTSIILFL  245 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~---~~~~~piilv~  245 (313)
                      +.+.+++||++|++.++.+|..++++++++|+|+|+++          ..+++....|...+....   ...+.|++|++
T Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~  121 (170)
T cd04116          52 HFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDD----------SQSFQNLSNWKKEFIYYADVKEPESFPFVVLG  121 (170)
T ss_pred             eEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCC----------HHHHHhHHHHHHHHHHhcccccCCCCcEEEEE
Confidence            34788999999999999999999999999999999998          677777766766665432   23568999999


Q ss_pred             ecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         246 NKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       246 NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      ||+|+....+...+..+...++   ..+.++++||++|.|+.++|+++.+.
T Consensus       122 nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         122 NKNDIPERQVSTEEAQAWCREN---GDYPYFETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             ECccccccccCHHHHHHHHHHC---CCCeEEEEECCCCCCHHHHHHHHHhh
Confidence            9999864333333333332222   23478999999999999999999864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.89  E-value=1e-22  Score=168.53  Aligned_cols=115  Identities=19%  Similarity=0.203  Sum_probs=91.1

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+++||++|++.+...|..++++++++|+|+|+++          ..++.+...|+..+... ...+.|+++++||.|
T Consensus        51 ~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D  119 (167)
T cd01867          51 KIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD----------EKSFENIRNWMRNIEEH-ASEDVERMLVGNKCD  119 (167)
T ss_pred             EEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcC----------HHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcc
Confidence            3689999999999999999999999999999999998          77888888887777543 235789999999999


Q ss_pred             ccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         250 LFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       250 l~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      +...+ ....+.....    ...++.++++||++|.||.++|+++.+.+..
T Consensus       120 l~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         120 MEEKRVVSKEEGEALA----DEYGIKFLETSAKANINVEEAFFTLAKDIKK  166 (167)
T ss_pred             cccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            97532 1212222222    2245678999999999999999999998864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.89  E-value=9.2e-23  Score=168.04  Aligned_cols=116  Identities=11%  Similarity=0.198  Sum_probs=89.9

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC----CCCCcEEEE
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW----FMDTSIILF  244 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~----~~~~piilv  244 (313)
                      ..+.+++|||+|++.++.+|..++++++++|+|+|+++          ..++++...|+..+.....    ..+.|++++
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv  116 (168)
T cd04119          47 KEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTD----------RQSFEALDSWLKEMKQEGGPHGNMENIVVVVC  116 (168)
T ss_pred             eEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHhHHHHHHHHHHhccccccCCCceEEEE
Confidence            34789999999999999999999999999999999998          6777777777777654322    256899999


Q ss_pred             eecCCccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         245 LNKNDLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       245 ~NK~Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      +||+|+..++ ....+.....    ...++.++++||++|.|+.++|+++.+.++
T Consensus       117 ~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         117 ANKIDLTKHRAVSEDEGRLWA----ESKGFKYFETSACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             EEchhcccccccCHHHHHHHH----HHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            9999986422 1222222221    223467899999999999999999998775

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.89  E-value=7.6e-23  Score=176.52  Aligned_cols=122  Identities=14%  Similarity=0.185  Sum_probs=89.7

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ..+.+.+|||+|++.++.+|+.+|.+++++|+|||+++          ..+++.....|...+.. ...++|++||+||+
T Consensus        47 ~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~----------~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~  115 (222)
T cd04173          47 RRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISR----------PETLDSVLKKWQGETQE-FCPNAKVVLVGCKL  115 (222)
T ss_pred             EEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-hCCCCCEEEEEECc
Confidence            34789999999999999999999999999999999999          78888887655544433 33579999999999


Q ss_pred             CcccccccC--------Ccccc-cCcCCCCCCC-eEEEEeecccCcC-HHHHHHHHHHHHHHhh
Q psy8318         249 DLFQEKITK--------SPLTV-CFPEYTDQKE-IYTHFTCATDTSN-IQFVFDAVTDVIIKAN  301 (313)
Q Consensus       249 Dl~~~k~~~--------~~l~~-~f~~~~~~~~-~~~~~tSA~~~~~-v~~~f~~i~~~i~~~~  301 (313)
                      |+....-..        .++.. .-..+++..+ +.+++|||++++| |.++|..+....+.+.
T Consensus       116 DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~  179 (222)
T cd04173         116 DMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRG  179 (222)
T ss_pred             ccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhcc
Confidence            986531000        01110 0000102234 4799999999985 9999999999877643

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.89  E-value=1.6e-22  Score=167.83  Aligned_cols=115  Identities=19%  Similarity=0.273  Sum_probs=90.6

Q ss_pred             CceeeeEecCCCcccc-ccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         170 DLHFKMFDVGGQRSER-KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r-~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .+.+++||++|++.++ .+|..++++++++++|+|+++          ..++.....|+..+.......++|+++|+||+
T Consensus        50 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~  119 (170)
T cd04115          50 RIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTN----------MASFHSLPSWIEECEQHSLPNEVPRILVGNKC  119 (170)
T ss_pred             EEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCC----------HHHHHhHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            3789999999999887 579999999999999999998          78888888888777655444679999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeeccc---CcCHHHHHHHHHHHH
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATD---TSNIQFVFDAVTDVI  297 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~---~~~v~~~f~~i~~~i  297 (313)
                      |+...+.........+.   ....+.+++|||++   +.|+.++|.++.+.+
T Consensus       120 Dl~~~~~~~~~~~~~~~---~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         120 DLREQIQVPTDLAQRFA---DAHSMPLFETSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             cchhhcCCCHHHHHHHH---HHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence            98754322222222222   22357789999999   899999999998766

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.89  E-value=1.9e-22  Score=167.58  Aligned_cols=117  Identities=14%  Similarity=0.154  Sum_probs=89.8

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+++||++|++.+..+|..+|++++++++|+|+++          ..++.....|+..+.+.....+.|+++|+||.|
T Consensus        48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~D  117 (170)
T cd04108          48 PFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTD----------VASLEHTRQWLEDALKENDPSSVLLFLVGTKKD  117 (170)
T ss_pred             EEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChh
Confidence            3679999999999999999999999999999999998          678888888888876654445678999999999


Q ss_pred             cccccc-cC-CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         250 LFQEKI-TK-SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       250 l~~~k~-~~-~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      +..+.. .. .+....+.   ...+..++++||++|.||.++|+.+.+.+.+
T Consensus       118 l~~~~~~~~~~~~~~~~~---~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         118 LSSPAQYALMEQDAIKLA---AEMQAEYWSVSALSGENVREFFFRVAALTFE  166 (170)
T ss_pred             cCccccccccHHHHHHHH---HHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            854321 11 11111111   1234568899999999999999999887643

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04155 Arl3 Arl3 subfamily

Probab=99.89  E-value=1.8e-22  Score=167.66  Aligned_cols=128  Identities=17%  Similarity=0.302  Sum_probs=99.9

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||.|++...+...+..+.+||++|+..+...|..++++++++++|+|.++          ..++.+...++..+.....
T Consensus        43 ~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~----------~~~~~~~~~~~~~~~~~~~  112 (173)
T cd04155          43 TPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSAD----------KKRLEEAGAELVELLEEEK  112 (173)
T ss_pred             CCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhChh
Confidence            356677666777788999999999999999999999999999999999998          6778888888888776555


Q ss_pred             CCCCcEEEEeecCCcccccccCCccccc--CcCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVC--FPEYTDQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~--f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      ..++|+++++||+|+.... ....+.+.  +..+ ..+.++++++||++|+|++++|+||++
T Consensus       113 ~~~~p~ivv~nK~D~~~~~-~~~~i~~~l~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         113 LAGVPVLVFANKQDLATAA-PAEEIAEALNLHDL-RDRTWHIQACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             hcCCCEEEEEECCCCccCC-CHHHHHHHcCCccc-CCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence            5679999999999986531 11122222  1222 334567889999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.89  E-value=1.9e-22  Score=177.15  Aligned_cols=115  Identities=14%  Similarity=0.133  Sum_probs=92.0

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC--------CCCCCcE
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK--------WFMDTSI  241 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~--------~~~~~pi  241 (313)
                      .+.+++|||+|++.++.+|..++.+++++|+|||+++          ..++++...|++++....        ...+.|+
T Consensus        47 ~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~----------~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~pi  116 (247)
T cd04143          47 VYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDN----------RESFEEVCRLREQILETKSCLKNKTKENVKIPM  116 (247)
T ss_pred             EEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhhcccccccccCCCCcE
Confidence            3788999999999999999999999999999999998          788998888888886542        2357899


Q ss_pred             EEEeecCCcccc-cccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         242 ILFLNKNDLFQE-KITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       242 ilv~NK~Dl~~~-k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +|++||+|+... .+...++.+.+..   ...+.++++||++|.||+++|++|....
T Consensus       117 IivgNK~Dl~~~~~v~~~ei~~~~~~---~~~~~~~evSAktg~gI~elf~~L~~~~  170 (247)
T cd04143         117 VICGNKADRDFPREVQRDEVEQLVGG---DENCAYFEVSAKKNSNLDEMFRALFSLA  170 (247)
T ss_pred             EEEEECccchhccccCHHHHHHHHHh---cCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            999999998752 2333333333321   2357799999999999999999999855

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04140 ARHI_like ARHI subfamily

Probab=99.88  E-value=1.5e-22  Score=167.20  Aligned_cols=113  Identities=16%  Similarity=0.187  Sum_probs=85.7

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC--CCCCCCcEEEEee
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS--KWFMDTSIILFLN  246 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~--~~~~~~piilv~N  246 (313)
                      +.+.+.+||++|++.++.+|..++.+++++|+|+|+++          ..++++...+++.+...  ....+.|++||+|
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n  116 (165)
T cd04140          47 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTS----------KQSLEELKPIYELICEIKGNNIEKIPIMLVGN  116 (165)
T ss_pred             EEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEE
Confidence            44789999999999999999999999999999999998          67777777776655432  1235789999999


Q ss_pred             cCCccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         247 KNDLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       247 K~Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      |+|+...+ +.........    ...++.+++|||++|.||.++|+||.+
T Consensus       117 K~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~SA~~g~~v~~~f~~l~~  162 (165)
T cd04140         117 KCDESHKREVSSNEGAACA----TEWNCAFMETSAKTNHNVQELFQELLN  162 (165)
T ss_pred             CccccccCeecHHHHHHHH----HHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence            99986521 2111111111    123467899999999999999999875

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.88  E-value=1.4e-22  Score=166.61  Aligned_cols=115  Identities=18%  Similarity=0.133  Sum_probs=90.1

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+++|||+|++.++.+|..++++++++++|+|+++          ..++.+...++..+.+.....+.|++|++||+|
T Consensus        49 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D  118 (164)
T cd04145          49 WAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTD----------RGSFEEVDKFHTQILRVKDRDEFPMILVGNKAD  118 (164)
T ss_pred             EEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcc
Confidence            3678999999999999999999999999999999998          778888888888876643445789999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +..++.........+.   ...++.++++||++|.||.++|+++.+.+
T Consensus       119 l~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         119 LEHQRKVSREEGQELA---RKLKIPYIETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             ccccceecHHHHHHHH---HHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence            8754321111111111   12346789999999999999999998754

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04125 RabA_like RabA-like subfamily

Probab=99.88  E-value=2.9e-22  Score=169.12  Aligned_cols=117  Identities=19%  Similarity=0.235  Sum_probs=91.8

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+++||++|++.++..|..++++++++|+|+|+++          ..++.+...|+..+... ...+.|++|++||.|
T Consensus        48 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~----------~~s~~~i~~~~~~i~~~-~~~~~~~ivv~nK~D  116 (188)
T cd04125          48 IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTD----------QESFENLKFWINEINRY-ARENVIKVIVANKSD  116 (188)
T ss_pred             EEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-CCCCCeEEEEEECCC
Confidence            4778999999999999999999999999999999998          77888888877776542 224589999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +...+.........+.   ...++.++++||++|.|+.++|+++.+.+..+
T Consensus       117 l~~~~~v~~~~~~~~~---~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~  164 (188)
T cd04125         117 LVNNKVVDSNIAKSFC---DSLNIPFFETSAKQSINVEEAFILLVKLIIKR  164 (188)
T ss_pred             CcccccCCHHHHHHHH---HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            8754322222222222   12356789999999999999999999998754

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03110 Rab GTPase; Provisional

Probab=99.88  E-value=2.7e-22  Score=173.13  Aligned_cols=130  Identities=14%  Similarity=0.180  Sum_probs=97.4

Q ss_pred             eeccee--EEEEEec--CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318         157 KTTGII--ETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN  232 (313)
Q Consensus       157 ~T~g~~--~~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~  232 (313)
                      ||+|..  ...+.++  .+.+++||++|++.++..|..++++++++|+|+|+++          ..+++....|+..+..
T Consensus        43 ~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~  112 (216)
T PLN03110         43 STIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK----------RQTFDNVQRWLRELRD  112 (216)
T ss_pred             CceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCC----------hHHHHHHHHHHHHHHH
Confidence            444533  2334443  3789999999999999999999999999999999998          6777777777776644


Q ss_pred             CCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         233 SKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       233 ~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      . ...+.|+++++||+|+...+....+....+.+   ..++.+++|||++|.||.++|+++.+.+.+.
T Consensus       113 ~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~---~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~  176 (216)
T PLN03110        113 H-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAE---KEGLSFLETSALEATNVEKAFQTILLEIYHI  176 (216)
T ss_pred             h-CCCCCeEEEEEEChhcccccCCCHHHHHHHHH---HcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            3 23578999999999986543222222222222   2467899999999999999999999988764

>cd04112 Rab26 Rab26 subfamily

Probab=99.88  E-value=3.8e-22  Score=168.89  Aligned_cols=119  Identities=16%  Similarity=0.186  Sum_probs=93.0

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+++||++|++.+...|..++.+++++|+|+|+++          ..++++...|+..+... ...+.|+++++||.|
T Consensus        49 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~----------~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~D  117 (191)
T cd04112          49 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITN----------KASFDNIRAWLTEIKEY-AQEDVVIMLLGNKAD  117 (191)
T ss_pred             EEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-CCCCCcEEEEEEccc
Confidence            3789999999999999999999999999999999998          77888888887776543 234689999999999


Q ss_pred             ccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhh
Q psy8318         250 LFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLK  303 (313)
Q Consensus       250 l~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~  303 (313)
                      +..++ +...+.....    ...++.++++||++|.|+.++|.++.+.+......
T Consensus       118 l~~~~~~~~~~~~~l~----~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~  168 (191)
T cd04112         118 MSGERVVKREDGERLA----KEYGVPFMETSAKTGLNVELAFTAVAKELKHRKYE  168 (191)
T ss_pred             chhccccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence            86432 1212221111    12346789999999999999999999999877543

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.88  E-value=4.9e-22  Score=162.65  Aligned_cols=129  Identities=23%  Similarity=0.321  Sum_probs=103.2

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .+|+|+....+.+++..+.+||++|+..++..|..++.+++++++|+|+++          ..++.++..++..+.....
T Consensus        28 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~----------~~~~~~~~~~~~~~~~~~~   97 (158)
T cd00878          28 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSD----------RERIEEAKEELHKLLNEEE   97 (158)
T ss_pred             CCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCcc
Confidence            456677777778888999999999999999999999999999999999998          7789999999999887655


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCcCC-CCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEY-TDQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~-~~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      ..+.|+++++||+|+.... ...++.+.+... .....+.++++||++|.|+.++|++|..
T Consensus        98 ~~~~piiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878          98 LKGVPLLIFANKQDLPGAL-SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             cCCCcEEEEeeccCCcccc-CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence            6789999999999987532 111222222111 0235678999999999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.88  E-value=2.9e-22  Score=170.06  Aligned_cols=111  Identities=15%  Similarity=0.191  Sum_probs=81.3

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHH-HHHHHHhCCCCCCCcEEEEeec
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK-LFDSICNSKWFMDTSIILFLNK  247 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~-~~~~~~~~~~~~~~piilv~NK  247 (313)
                      ..+.+++|||+|++.  .....+|++++++|+|+|+++          ..++++... |...+...  ..++|++||+||
T Consensus        64 ~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~----------~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK  129 (195)
T cd01873          64 VSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIAS----------PNSLRNVKTMWYPEIRHF--CPRVPVILVGCK  129 (195)
T ss_pred             EEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCC----------hhHHHHHHHHHHHHHHHh--CCCCCEEEEEEc
Confidence            358899999999974  345678999999999999998          788888764 55555332  247899999999


Q ss_pred             CCccccc-------------------ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         248 NDLFQEK-------------------ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       248 ~Dl~~~k-------------------~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      +|+....                   ....+....+.   +..++.+++|||++|.||.++|+.+.+.
T Consensus       130 ~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a---~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         130 LDLRYADLDEVNRARRPLARPIKNADILPPETGRAVA---KELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             hhccccccchhhhcccccccccccCCccCHHHHHHHH---HHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            9986421                   00111111121   3356789999999999999999998763

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04124 RabL2 RabL2 subfamily

Probab=99.88  E-value=4.2e-22  Score=163.92  Aligned_cols=114  Identities=16%  Similarity=0.227  Sum_probs=88.3

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ..+.+++|||+|++.++..|..++++++++|+|+|+++          ..++.+...|+..+.+.  ..+.|+++++||+
T Consensus        47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~  114 (161)
T cd04124          47 KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTR----------KITYKNLSKWYEELREY--RPEIPCIVVANKI  114 (161)
T ss_pred             EEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh--CCCCcEEEEEECc
Confidence            45789999999999999999999999999999999998          66777666777666432  2468999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |+... .. .+.. .+.   ...++.++++||++|.|+.++|+.+.+.+++.
T Consensus       115 Dl~~~-~~-~~~~-~~~---~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  160 (161)
T cd04124         115 DLDPS-VT-QKKF-NFA---EKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY  160 (161)
T ss_pred             cCchh-HH-HHHH-HHH---HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            98532 11 1111 111   12356789999999999999999999887754

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>KOG0091|consensus

Probab=99.88  E-value=7.2e-23  Score=161.41  Aligned_cols=125  Identities=12%  Similarity=0.157  Sum_probs=106.7

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC-CCCCcEEEEeecC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW-FMDTSIILFLNKN  248 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~-~~~~piilv~NK~  248 (313)
                      .+++++|||+||+++|+....||+++-+++.|+|+++          ..+++....|.++...+-. ..++-++|||.|+
T Consensus        57 riklqlwdtagqerfrsitksyyrnsvgvllvyditn----------r~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKs  126 (213)
T KOG0091|consen   57 RIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITN----------RESFEHVENWVKEAAMATQGPDKVVFLLVGHKS  126 (213)
T ss_pred             EEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccc----------hhhHHHHHHHHHHHHHhcCCCCeeEEEEecccc
Confidence            4789999999999999999999999999999999999          8999999999988755433 4567789999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhh-hcCC
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLK-DCGI  307 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~-~~~~  307 (313)
                      |+...+....+..++|..+   +++.+.+|||++|.||++.|+-|.+.|.+...+ .+.+
T Consensus       127 DL~SqRqVt~EEaEklAa~---hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~qGeik~  183 (213)
T KOG0091|consen  127 DLQSQRQVTAEEAEKLAAS---HGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQGEIKL  183 (213)
T ss_pred             chhhhccccHHHHHHHHHh---cCceEEEecccCCCcHHHHHHHHHHHHHHHHhcCceee
Confidence            9987766666666777755   899999999999999999999999999876544 4433

>cd01868 Rab11_like Rab11-like

Probab=99.88  E-value=3.6e-22  Score=164.59  Aligned_cols=113  Identities=16%  Similarity=0.219  Sum_probs=88.5

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      ..+++||++|++.+..+|..++++++++|+|+|+++          ..++.+...|+..+... ...+.|++|++||.|+
T Consensus        52 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~pi~vv~nK~Dl  120 (165)
T cd01868          52 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK----------KQTFENVERWLKELRDH-ADSNIVIMLVGNKSDL  120 (165)
T ss_pred             EEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-CCCCCeEEEEEECccc
Confidence            678999999999999999999999999999999998          77888888888776553 2346899999999998


Q ss_pred             ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ...+....+....+.   ...++.++++||++|.|+.++|+++.+.+
T Consensus       121 ~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         121 RHLRAVPTEEAKAFA---EKNGLSFIETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             cccccCCHHHHHHHH---HHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            654222211111222   22457789999999999999999998764

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01864 Rab19 Rab19 subfamily

Probab=99.88  E-value=4.8e-22  Score=164.03  Aligned_cols=118  Identities=12%  Similarity=0.131  Sum_probs=89.6

Q ss_pred             EEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318         165 HFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII  242 (313)
Q Consensus       165 ~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii  242 (313)
                      .+.+++  +.+++||++|++.++..|..++++++++++|+|+++          ..++++...|+..+... ...++|++
T Consensus        44 ~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p~i  112 (165)
T cd01864          44 TLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITR----------RSSFESVPHWIEEVEKY-GASNVVLL  112 (165)
T ss_pred             EEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcC----------HHHHHhHHHHHHHHHHh-CCCCCcEE
Confidence            344444  688999999999999999999999999999999998          77788877888877543 23578999


Q ss_pred             EEeecCCccccccc-CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         243 LFLNKNDLFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       243 lv~NK~Dl~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      +|+||+|+...+.. ..........+   +...++++||++|.|+.++|+++.+.
T Consensus       113 vv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         113 LIGNKCDLEEQREVLFEEACTLAEKN---GMLAVLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             EEEECcccccccccCHHHHHHHHHHc---CCcEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999998754211 11221211111   23468999999999999999999864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01866 Rab2 Rab2 subfamily

Probab=99.88  E-value=5.4e-22  Score=164.37  Aligned_cols=115  Identities=16%  Similarity=0.204  Sum_probs=92.1

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      ...+.+||++|++.++..+..++++++++++|+|+++          ..++.....|+..+.... ..+.|++|++||.|
T Consensus        52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~D  120 (168)
T cd01866          52 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLTSWLEDARQHS-NSNMTIMLIGNKCD  120 (168)
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcc
Confidence            4689999999999999999999999999999999998          788888888888775532 35789999999999


Q ss_pred             ccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         250 LFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       250 l~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      +..++ +...+.....    ...++.++++||++++|+.++|.++.+.+++
T Consensus       121 l~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         121 LESRREVSYEEGEAFA----KEHGLIFMETSAKTASNVEEAFINTAKEIYE  167 (168)
T ss_pred             cccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            87432 2222222222    2245789999999999999999999988764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01892 Miro2 Miro2 subfamily

Probab=99.88  E-value=7.7e-22  Score=163.77  Aligned_cols=111  Identities=7%  Similarity=-0.002  Sum_probs=83.9

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      ..+.+||++|++.++.+|..+|++++++|+|+|+++          ..+++....++..+..   ..++|+++|+||+|+
T Consensus        54 ~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~----------~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl  120 (169)
T cd01892          54 KYLILREVGEDEVAILLNDAELAACDVACLVYDSSD----------PKSFSYCAEVYKKYFM---LGEIPCLFVAAKADL  120 (169)
T ss_pred             EEEEEEecCCcccccccchhhhhcCCEEEEEEeCCC----------HHHHHHHHHHHHHhcc---CCCCeEEEEEEcccc
Confidence            678999999999999999999999999999999998          6777777677765422   236899999999998


Q ss_pred             cccccc-CCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         251 FQEKIT-KSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       251 ~~~k~~-~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      ..++.. ..+..+ +.   ...++ .++++||++|.|+.++|+.+.+.+.
T Consensus       121 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~  166 (169)
T cd01892         121 DEQQQRYEVQPDE-FC---RKLGLPPPLHFSSKLGDSSNELFTKLATAAQ  166 (169)
T ss_pred             cccccccccCHHH-HH---HHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence            643211 111111 11   11222 3589999999999999999998764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.88  E-value=4.3e-22  Score=163.60  Aligned_cols=115  Identities=19%  Similarity=0.229  Sum_probs=92.7

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ..+.+++||++|++.+...+..++++++++|+|+|+++          .++++....|+..+..... .++|++|++||.
T Consensus        46 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~----------~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~  114 (162)
T PF00071_consen   46 KPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTD----------EESFENLKKWLEEIQKYKP-EDIPIIVVGNKS  114 (162)
T ss_dssp             EEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTB----------HHHHHTHHHHHHHHHHHST-TTSEEEEEEETT
T ss_pred             cccccccccccccccccccccccccccccccccccccc----------ccccccccccccccccccc-ccccceeeeccc
Confidence            34789999999999999999999999999999999999          8888888888888755433 568999999999


Q ss_pred             Cccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         249 DLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       249 Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      |+..++ +...+......    ..+..++++||+++.||.++|..+.+.++
T Consensus       115 D~~~~~~v~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  115 DLSDEREVSVEEAQEFAK----ELGVPYFEVSAKNGENVKEIFQELIRKIL  161 (162)
T ss_dssp             TGGGGSSSCHHHHHHHHH----HTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHHHHH----HhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            988632 22223222222    23478999999999999999999998875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04177 RSR1 RSR1 subgroup

Probab=99.87  E-value=5.9e-22  Score=164.10  Aligned_cols=117  Identities=15%  Similarity=0.122  Sum_probs=91.3

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+++||++|++.++.+|..++++++++++|+|+++          ..+++....++..+.......+.|+++++||.|
T Consensus        48 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~----------~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D  117 (168)
T cd04177          48 QCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTS----------EASLNELGELREQVLRIKDSDNVPMVLVGNKAD  117 (168)
T ss_pred             EEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChh
Confidence            4789999999999999999999999999999999998          778888888777776543445799999999999


Q ss_pred             cccccccC-CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         250 LFQEKITK-SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       250 l~~~k~~~-~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      +...+... .........+   ..+.++++||++|.|+.++|+++.+.++.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~SA~~~~~i~~~f~~i~~~~~~  165 (168)
T cd04177         118 LEDDRQVSREDGVSLSQQW---GNVPFYETSARKRTNVDEVFIDLVRQIIC  165 (168)
T ss_pred             ccccCccCHHHHHHHHHHc---CCceEEEeeCCCCCCHHHHHHHHHHHHhh
Confidence            87543211 1111111111   23678999999999999999999987753

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.87  E-value=9.9e-22  Score=159.85  Aligned_cols=128  Identities=20%  Similarity=0.314  Sum_probs=98.9

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|+....+..+++.+.+||++|++.++..|..++.+++++++|+|+++          ..++.....++..+.....
T Consensus        29 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~   98 (159)
T cd04159          29 IPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAAD----------RTALEAAKNELHDLLEKPS   98 (159)
T ss_pred             cCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHcChh
Confidence            356676666667778899999999999999999999999999999999998          5677777788888776655


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccC--cCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f--~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      ..+.|+++++||+|+..+. ....+...+  ... ..+.+.++++||++|.|+.++|+++.+
T Consensus        99 ~~~~p~iiv~nK~D~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159          99 LEGIPLLVLGNKNDLPGAL-SVDELIEQMNLKSI-TDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             hcCCCEEEEEeCccccCCc-CHHHHHHHhCcccc-cCCceEEEEEEeccCCChHHHHHHHhh
Confidence            5688999999999986532 111111111  111 234578899999999999999999865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04113 Rab4 Rab4 subfamily

Probab=99.87  E-value=5.9e-22  Score=162.68  Aligned_cols=113  Identities=15%  Similarity=0.140  Sum_probs=88.3

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      ...+++||++|++.++..|..++++++++|+|+|+++          ..++.....|+..+... ...++|++|++||.|
T Consensus        48 ~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D  116 (161)
T cd04113          48 RVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITN----------RTSFEALPTWLSDARAL-ASPNIVVILVGNKSD  116 (161)
T ss_pred             EEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchh
Confidence            3688999999999999999999999999999999998          67777777777766432 235789999999999


Q ss_pred             cccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         250 LFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       250 l~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +...+. ..........    ..++.++++||+++.|+.++|+++++.+
T Consensus       117 ~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~~~~~~  161 (161)
T cd04113         117 LADQREVTFLEASRFAQ----ENGLLFLETSALTGENVEEAFLKCARSI  161 (161)
T ss_pred             cchhccCCHHHHHHHHH----HcCCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            865321 1122222222    2347899999999999999999998753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.87  E-value=8.6e-22  Score=165.92  Aligned_cols=116  Identities=18%  Similarity=0.233  Sum_probs=88.5

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHH-HHHHHHhCCCCCCCcEEEEeecC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK-LFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~-~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .+.+++|||+|++.+...|..++++++++|+|+|+++          ..++++... |+..+...  ..+.|+++++||.
T Consensus        48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~  115 (187)
T cd04132          48 IIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDN----------PTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKT  115 (187)
T ss_pred             EEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCh
Confidence            3678999999999999999999999999999999998          778887765 55444322  2478999999999


Q ss_pred             Ccccccc-----cCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         249 DLFQEKI-----TKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       249 Dl~~~k~-----~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      |+..+.-     ...+..+..    ...++ .+++|||++|.||.++|.++.+.++...
T Consensus       116 Dl~~~~~~~~~v~~~~~~~~~----~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~  170 (187)
T cd04132         116 DLRKDKNLDRKVTPAQAESVA----KKQGAFAYLECSAKTMENVEEVFDTAIEEALKKE  170 (187)
T ss_pred             hhhhCccccCCcCHHHHHHHH----HHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhh
Confidence            9865321     111111111    11334 7899999999999999999999988654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PLN03108 Rab family protein; Provisional

Probab=99.87  E-value=1.3e-21  Score=168.10  Aligned_cols=117  Identities=15%  Similarity=0.209  Sum_probs=91.7

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+++||++|++.++.+|..++.+++++|+|+|+++          ..++.....|+..+.... ..+.|+++++||+|
T Consensus        54 ~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~----------~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~D  122 (210)
T PLN03108         54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLASWLEDARQHA-NANMTIMLIGNKCD  122 (210)
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCc----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcc
Confidence            3678999999999999999999999999999999998          778887777777765432 35789999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +..++....+..+.+.   ...++.++++||+++.||.++|+|+++.+.++
T Consensus       123 l~~~~~~~~~~~~~~~---~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~  170 (210)
T PLN03108        123 LAHRRAVSTEEGEQFA---KEHGLIFMEASAKTAQNVEEAFIKTAAKIYKK  170 (210)
T ss_pred             CccccCCCHHHHHHHH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            8764322211112221   22457899999999999999999999998754

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.87  E-value=9.6e-22  Score=161.55  Aligned_cols=114  Identities=17%  Similarity=0.225  Sum_probs=90.8

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .++.+.+||++|++.++..|..++++++++|+|+|+++          ..++..+..++..+..... .+.|+++++||+
T Consensus        48 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~  116 (163)
T cd01860          48 TTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITS----------EESFEKAKSWVKELQRNAS-PNIIIALVGNKA  116 (163)
T ss_pred             EEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhCC-CCCeEEEEEECc
Confidence            34789999999999999999999999999999999998          7788888888888765433 678999999999


Q ss_pred             Ccccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         249 DLFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       249 Dl~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      |+...+. .........    ...++.++++||++|.|+.++|+++.+.+
T Consensus       117 D~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         117 DLESKRQVSTEEAQEYA----DENGLLFFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             cccccCcCCHHHHHHHH----HHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            9874321 122222221    12346799999999999999999998875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.87  E-value=1e-21  Score=161.17  Aligned_cols=111  Identities=15%  Similarity=0.217  Sum_probs=85.8

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+++||++|++.++..|..++++++++++|+|+++          ..++.....|...+..  ...+.|+++++||.|
T Consensus        50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~s~~~l~~~~~~~~~--~~~~~p~iiv~nK~D  117 (162)
T cd04106          50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTD----------RESFEAIESWKEKVEA--ECGDIPMVLVQTKID  117 (162)
T ss_pred             EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHH--hCCCCCEEEEEEChh
Confidence            4789999999999999999999999999999999998          6777777676666543  235789999999999


Q ss_pred             cccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         250 LFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       250 l~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      +..+.. ...+... +.   ...++.++++||+++.|+.++|+++...
T Consensus       118 l~~~~~v~~~~~~~-~~---~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (162)
T cd04106         118 LLDQAVITNEEAEA-LA---KRLQLPLFRTSVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             cccccCCCHHHHHH-HH---HHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            865322 1112111 11   2235678999999999999999998753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.87  E-value=1.1e-21  Score=161.38  Aligned_cols=113  Identities=14%  Similarity=0.175  Sum_probs=87.0

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+.+||++|++.++.+|..+++++++++||+|+++          ..++.+...|++.+....  .+.|+++|+||+|
T Consensus        51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~D  118 (164)
T cd04101          51 TVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSN----------KASFENCSRWVNKVRTAS--KHMPGVLVGNKMD  118 (164)
T ss_pred             EEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhC--CCCCEEEEEECcc
Confidence            4789999999999999999999999999999999998          677777777777765432  4689999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +..+..........+.   ...++.++++||+++.|+.++|+++.+.+
T Consensus       119 l~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         119 LADKAEVTDAQAQAFA---QANQLKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             cccccCCCHHHHHHHH---HHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence            8643211111111111   12346789999999999999999998865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>KOG0081|consensus

Probab=99.87  E-value=3.5e-23  Score=162.47  Aligned_cols=118  Identities=16%  Similarity=0.288  Sum_probs=100.8

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+++|||+||+++|++...+|+++-+.++++|+++          ..++.+...|+.++-.+-...+.-|+|++||+|+
T Consensus        67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~----------eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL  136 (219)
T KOG0081|consen   67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTS----------EQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADL  136 (219)
T ss_pred             EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccc----------hHHHHHHHHHHHHHHHhhccCCCCEEEEcCccch
Confidence            679999999999999999999999999999999998          7899999999999877766778899999999999


Q ss_pred             ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      ...+.........+.   ...++++++|||-+|.||.+..+-+.+.+.++.
T Consensus       137 ~~~R~Vs~~qa~~La---~kyglPYfETSA~tg~Nv~kave~LldlvM~Ri  184 (219)
T KOG0081|consen  137 EDQRVVSEDQAAALA---DKYGLPYFETSACTGTNVEKAVELLLDLVMKRI  184 (219)
T ss_pred             hhhhhhhHHHHHHHH---HHhCCCeeeeccccCcCHHHHHHHHHHHHHHHH
Confidence            987665544333332   225789999999999999999988888776553

>cd04118 Rab24 Rab24 subfamily

Probab=99.87  E-value=2.8e-21  Score=163.69  Aligned_cols=116  Identities=16%  Similarity=0.187  Sum_probs=89.4

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+.+||++|++.++..|..+|++++++|+|+|+++          ..++++...|+..+...  ..++|++||+||.|+
T Consensus        50 ~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~----------~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl  117 (193)
T cd04118          50 VTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTD----------SSSFERAKFWVKELQNL--EEHCKIYLCGTKSDL  117 (193)
T ss_pred             EEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccc
Confidence            678899999999999999999999999999999998          67787777777776543  246899999999998


Q ss_pred             ccccccC-----CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318         251 FQEKITK-----SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANL  302 (313)
Q Consensus       251 ~~~k~~~-----~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~  302 (313)
                      ....-..     .+.....    ...++.++++||++|.||.++|+++.+.+.++..
T Consensus       118 ~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~  170 (193)
T cd04118         118 IEQDRSLRQVDFHDVQDFA----DEIKAQHFETSSKTGQNVDELFQKVAEDFVSRAN  170 (193)
T ss_pred             cccccccCccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence            5421011     1111111    2234678899999999999999999999876543

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.86  E-value=2.5e-21  Score=159.01  Aligned_cols=115  Identities=16%  Similarity=0.249  Sum_probs=89.8

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+++||++|++.+...+..++++++++|+|+|+++          ..++++...|+..+..... .++|+++++||+|+
T Consensus        49 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~  117 (164)
T smart00175       49 VKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITN----------RESFENLKNWLKELREYAD-PNVVIMLVGNKSDL  117 (164)
T ss_pred             EEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhc
Confidence            689999999999999999999999999999999998          7788888887777654332 47999999999997


Q ss_pred             ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      ........+....+.   ...++.++++||++|.|+.++|+++.+.+..
T Consensus       118 ~~~~~~~~~~~~~~~---~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~  163 (164)
T smart00175      118 EDQRQVSREEAEAFA---EEHGLPFFETSAKTNTNVEEAFEELAREILK  163 (164)
T ss_pred             ccccCCCHHHHHHHH---HHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            652211111111122   1235679999999999999999999998754

Rab GTPases are implicated in vesicle trafficking.

>cd01861 Rab6 Rab6 subfamily

Probab=99.86  E-value=2e-21  Score=159.32  Aligned_cols=112  Identities=15%  Similarity=0.179  Sum_probs=88.1

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+++||++|+..++..|..++++++++++|+|+++          ..++.+...++..+.... ..+.|+++++||+|+
T Consensus        49 ~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~  117 (161)
T cd01861          49 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITN----------RQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDL  117 (161)
T ss_pred             EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhc
Confidence            679999999999999999999999999999999998          788888888888876532 237999999999998


Q ss_pred             ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      .............+.   ...++.++++||+++.|+.++|+++.+.
T Consensus       118 ~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         118 SDKRQVSTEEGEKKA---KELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             cccCccCHHHHHHHH---HHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            543221111111111   1235778999999999999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01862 Rab7 Rab7 subfamily

Probab=99.86  E-value=3.1e-21  Score=159.81  Aligned_cols=118  Identities=12%  Similarity=0.146  Sum_probs=90.0

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC---CCCCCcEEEEee
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK---WFMDTSIILFLN  246 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~---~~~~~piilv~N  246 (313)
                      .+.+++||++|++.+..+|..++++++++|+|+|+++          ..++++...|+..+....   ...++|+++++|
T Consensus        48 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n  117 (172)
T cd01862          48 LVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTN----------PKSFESLDSWRDEFLIQASPSDPENFPFVVLGN  117 (172)
T ss_pred             EEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCccCCCCceEEEEEE
Confidence            3678899999999999999999999999999999997          667777766666654432   234789999999


Q ss_pred             cCCcccc-cccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         247 KNDLFQE-KITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       247 K~Dl~~~-k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |+|+... ..............   ..+.++++||++|.|+.++|+++.+.+.+.
T Consensus       118 K~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  169 (172)
T cd01862         118 KIDLEEKRQVSTKKAQQWCQSN---GNIPYFETSAKEAINVEQAFETIARKALEQ  169 (172)
T ss_pred             CcccccccccCHHHHHHHHHHc---CCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            9999742 22222222222222   236789999999999999999999988765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.86  E-value=2.1e-21  Score=161.41  Aligned_cols=114  Identities=15%  Similarity=0.223  Sum_probs=86.5

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHH-HHHHHHhCCCCCCCcEEEEeecC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK-LFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~-~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .+.+++|||+|++.++..|..++++++++|+|+|+++          ..++++... |+..+...  ..++|++|++||+
T Consensus        45 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~  112 (174)
T smart00174       45 PVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDS----------PASFENVKEKWYPEVKHF--CPNTPIILVGTKL  112 (174)
T ss_pred             EEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh--CCCCCEEEEecCh
Confidence            3679999999999999999999999999999999998          778887764 56655432  2579999999999


Q ss_pred             CcccccccCCccc------------ccCcCCCCCCC-eEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         249 DLFQEKITKSPLT------------VCFPEYTDQKE-IYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       249 Dl~~~k~~~~~l~------------~~f~~~~~~~~-~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      |+..+.....++.            ..+.   ...+ ..++++||++|.||.++|+.+.+.++
T Consensus       113 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~  172 (174)
T smart00174      113 DLREDKSTLRELSKQKQEPVTYEQGEALA---KRIGAVKYLECSALTQEGVREVFEEAIRAAL  172 (174)
T ss_pred             hhhhChhhhhhhhcccCCCccHHHHHHHH---HHcCCcEEEEecCCCCCCHHHHHHHHHHHhc
Confidence            9875321111111            0111   1233 37899999999999999999998774

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04135 Tc10 TC10 subfamily

Probab=99.86  E-value=3.9e-21  Score=159.81  Aligned_cols=117  Identities=12%  Similarity=0.104  Sum_probs=83.3

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+++||++|++.++..|..++.+++++|+|+|+++          ..++++....|...+... ..+.|+++++||+|
T Consensus        47 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~----------~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~D  115 (174)
T cd04135          47 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN----------PASFQNVKEEWVPELKEY-APNVPYLLVGTQID  115 (174)
T ss_pred             EEEEEEEeCCCcccccccccccCCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchh
Confidence            3568899999999999999999999999999999998          677777654333333322 46799999999999


Q ss_pred             cccccccCCcccccC---------cCCCCCCC-eEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         250 LFQEKITKSPLTVCF---------PEYTDQKE-IYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       250 l~~~k~~~~~l~~~f---------~~~~~~~~-~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +..+......+....         ..+....+ ..+++|||++|.||.++|+.+.+.+
T Consensus       116 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         116 LRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             hhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence            865321111000000         00001122 3688999999999999999998765

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04123 Rab21 Rab21 subfamily

Probab=99.86  E-value=3.6e-21  Score=157.58  Aligned_cols=113  Identities=14%  Similarity=0.175  Sum_probs=87.6

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+.+||++|++.+..+|..++.+++++++|+|+++          ..+++....+++.+..... .+.|+++++||+|
T Consensus        48 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D  116 (162)
T cd04123          48 RIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITD----------ADSFQKVKKWIKELKQMRG-NNISLVIVGNKID  116 (162)
T ss_pred             EEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcc
Confidence            3679999999999999999999999999999999998          6777777777766644322 3789999999999


Q ss_pred             ccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         250 LFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       250 l~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +...+ +....+....    ...++.++++||+++.|+.++|+|+.+.+
T Consensus       117 ~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         117 LERQRVVSKSEAEEYA----KSVGAKHFETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             cccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            87532 2222222222    12356689999999999999999998765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01863 Rab18 Rab18 subfamily

Probab=99.86  E-value=4.6e-21  Score=157.27  Aligned_cols=113  Identities=15%  Similarity=0.200  Sum_probs=90.3

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+.+||++|++.+...|..++++++++++|+|+++          ..+++....|+..+.......++|+++++||+|
T Consensus        48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D  117 (161)
T cd01863          48 KVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTR----------RDTFTNLETWLNELETYSTNNDIVKMLVGNKID  117 (161)
T ss_pred             EEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCC----------HHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCc
Confidence            4789999999999999999999999999999999998          778888888777776554456799999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      +............ +.   ...++.++++||++|.|+.++|+++.+.
T Consensus       118 ~~~~~~~~~~~~~-~~---~~~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         118 KENREVTREEGLK-FA---RKHNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             ccccccCHHHHHH-HH---HHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence            8743332222211 21   2246789999999999999999998765

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.86  E-value=4.2e-21  Score=157.56  Aligned_cols=117  Identities=15%  Similarity=0.173  Sum_probs=92.0

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      +.+.+.+||++|+..+...|..++++++++++|+|+++          ..++.....++..+.......+.|+++++||+
T Consensus        46 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~  115 (164)
T cd04139          46 EDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITD----------MESFTATAEFREQILRVKDDDNVPLLLVGNKC  115 (164)
T ss_pred             EEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcc
Confidence            34789999999999999999999999999999999998          77888888888887765444679999999999


Q ss_pred             Cccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         249 DLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       249 Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      |+...+ ..........    ...++.++++||++|+|+.++|+++.+++.+
T Consensus       116 D~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  163 (164)
T cd04139         116 DLEDKRQVSSEEAANLA----RQWGVPYVETSAKTRQNVEKAFYDLVREIRQ  163 (164)
T ss_pred             ccccccccCHHHHHHHH----HHhCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            987631 1111111211    1134678999999999999999999987753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PLN03118 Rab family protein; Provisional

Probab=99.86  E-value=5.6e-21  Score=164.27  Aligned_cols=117  Identities=15%  Similarity=0.148  Sum_probs=89.9

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC-CCCCCCcEEEEeecC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS-KWFMDTSIILFLNKN  248 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~-~~~~~~piilv~NK~  248 (313)
                      .+.+.+|||+|++.++.+|..++++++++|+|+|+++          ..++.+...+|...+.. ....+.|++||+||+
T Consensus        61 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~----------~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~  130 (211)
T PLN03118         61 RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTR----------RETFTNLSDVWGKEVELYSTNQDCVKMLVGNKV  130 (211)
T ss_pred             EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            3688999999999999999999999999999999998          67777777655554432 223568999999999


Q ss_pred             CcccccccC-CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         249 DLFQEKITK-SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       249 Dl~~~k~~~-~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |+..++... ..... +.   ...++.++++||+++.|+.++|++|.+.+...
T Consensus       131 Dl~~~~~i~~~~~~~-~~---~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~  179 (211)
T PLN03118        131 DRESERDVSREEGMA-LA---KEHGCLFLECSAKTRENVEQCFEELALKIMEV  179 (211)
T ss_pred             cccccCccCHHHHHH-HH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            986542221 11111 11   22456789999999999999999999988654

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.85  E-value=5.1e-21  Score=159.27  Aligned_cols=110  Identities=16%  Similarity=0.223  Sum_probs=81.6

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHH-HHHHHHhCCCCCCCcEEEEeecC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK-LFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~-~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .+.+++||++|++.+...|..++++++++|+|+|+++          +.++++... |+..+..  ...+.|+++++||.
T Consensus        47 ~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~----------~~sf~~~~~~~~~~~~~--~~~~~piilv~nK~  114 (173)
T cd04130          47 PVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVN----------PSSFQNISEKWIPEIRK--HNPKAPIILVGTQA  114 (173)
T ss_pred             EEEEEEEECCCChhhccccccccCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHh--hCCCCCEEEEeeCh
Confidence            3678999999999999999999999999999999998          778887754 5555543  23468999999999


Q ss_pred             Ccccccc--------cCCc----ccccCcCCCCCCC-eEEEEeecccCcCHHHHHHHHH
Q psy8318         249 DLFQEKI--------TKSP----LTVCFPEYTDQKE-IYTHFTCATDTSNIQFVFDAVT  294 (313)
Q Consensus       249 Dl~~~k~--------~~~~----l~~~f~~~~~~~~-~~~~~tSA~~~~~v~~~f~~i~  294 (313)
                      |+....-        ...+    ....++   ...+ ..+++|||++|.||.++|+.+.
T Consensus       115 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a---~~~~~~~~~e~Sa~~~~~v~~lf~~~~  170 (173)
T cd04130         115 DLRTDVNVLIQLARYGEKPVSQSRAKALA---EKIGACEYIECSALTQKNLKEVFDTAI  170 (173)
T ss_pred             hhccChhHHHHHhhcCCCCcCHHHHHHHH---HHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9864210        0000    011111   1123 3789999999999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04142 RRP22 RRP22 subfamily

Probab=99.85  E-value=8.4e-21  Score=161.51  Aligned_cols=117  Identities=13%  Similarity=0.099  Sum_probs=87.1

Q ss_pred             ceeeeEecCCCcccc----cc----ccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC--CCCCCc
Q psy8318         171 LHFKMFDVGGQRSER----KK----WIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK--WFMDTS  240 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r----~~----w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~--~~~~~p  240 (313)
                      +.+++|||+|++.+.    ..    +..++++++++|+|+|+++          ..+++....+++.+.+..  ...++|
T Consensus        49 ~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~----------~~S~~~~~~~~~~i~~~~~~~~~~~p  118 (198)
T cd04142          49 YDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICS----------PDSFHYVKLLRQQILETRPAGNKEPP  118 (198)
T ss_pred             EEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcccCCCCCC
Confidence            678899999975431    11    3345789999999999998          788888888888887653  246799


Q ss_pred             EEEEeecCCcccccccCC-cccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         241 IILFLNKNDLFQEKITKS-PLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       241 iilv~NK~Dl~~~k~~~~-~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ++|++||+|+...+.... .+.....   +..++.+++|||++|.||.++|+.+.+.+..+
T Consensus       119 iiivgNK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~  176 (198)
T cd04142         119 IVVVGNKRDQQRHRFAPRHVLSVLVR---KSWKCGYLECSAKYNWHILLLFKELLISATTR  176 (198)
T ss_pred             EEEEEECccccccccccHHHHHHHHH---HhcCCcEEEecCCCCCCHHHHHHHHHHHhhcc
Confidence            999999999966433222 2221111   12457889999999999999999999888754

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.85  E-value=5.7e-21  Score=157.61  Aligned_cols=116  Identities=14%  Similarity=0.201  Sum_probs=85.3

Q ss_pred             cCceeeeEecCCCcc-ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC-CCCCcEEEEee
Q psy8318         169 KDLHFKMFDVGGQRS-ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW-FMDTSIILFLN  246 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~-~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~-~~~~piilv~N  246 (313)
                      +.+.+++||++|+.. ....+..++++++++|+|+|+++          ..++++...|+..+..... ..++|+++|+|
T Consensus        45 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~piilv~n  114 (165)
T cd04146          45 EQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITD----------RSSFDEISQLKQLIREIKKRDREIPVILVGN  114 (165)
T ss_pred             EEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            346799999999985 35567889999999999999998          7777777776666544322 35799999999


Q ss_pred             cCCccccc-ccCCcccccCcCCCCCCCeEEEEeecccC-cCHHHHHHHHHHHHH
Q psy8318         247 KNDLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDT-SNIQFVFDAVTDVII  298 (313)
Q Consensus       247 K~Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~-~~v~~~f~~i~~~i~  298 (313)
                      |+|+...+ +...+.. .+.   ...++.++++||++| .||.++|+++++.+.
T Consensus       115 K~Dl~~~~~v~~~~~~-~~~---~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         115 KADLLHYRQVSTEEGE-KLA---SELGCLFFEVSAAEDYDGVHSVFHELCREVR  164 (165)
T ss_pred             CCchHHhCccCHHHHH-HHH---HHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence            99986432 2222211 121   123467899999999 599999999998663

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04114 Rab30 Rab30 subfamily

Probab=99.85  E-value=7.7e-21  Score=157.21  Aligned_cols=119  Identities=17%  Similarity=0.193  Sum_probs=87.5

Q ss_pred             EEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318         165 HFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII  242 (313)
Q Consensus       165 ~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii  242 (313)
                      .+.+++  +.+.+||++|++.++..|..++..++++++|+|+++          ..+++....|+..+.. ....+.|++
T Consensus        48 ~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~-~~~~~~~~i  116 (169)
T cd04114          48 TVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITC----------EESFRCLPEWLREIEQ-YANNKVITI  116 (169)
T ss_pred             EEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHH-hCCCCCeEE
Confidence            344443  678999999999999999999999999999999997          5666655566554422 122468999


Q ss_pred             EEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         243 LFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       243 lv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +++||+|+...+-........+.+.   ....++++||++|.|+.++|+++.+.+
T Consensus       117 ~v~NK~D~~~~~~i~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         117 LVGNKIDLAERREVSQQRAEEFSDA---QDMYYLETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             EEEECcccccccccCHHHHHHHHHH---cCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence            9999999865322222222333222   346789999999999999999998765

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.85  E-value=9.7e-21  Score=161.21  Aligned_cols=115  Identities=18%  Similarity=0.111  Sum_probs=89.9

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+++||++|+..++.+|..++.+++++|+|+|+++          ..++++...++..+.......++|++|++||+|+
T Consensus        47 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl  116 (198)
T cd04147          47 LTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDD----------PESFEEVERLREEILEVKEDKFVPIVVVGNKADS  116 (198)
T ss_pred             EEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccc
Confidence            688999999999999999999999999999999998          7788888888888876554467999999999998


Q ss_pred             ccc-c-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         251 FQE-K-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       251 ~~~-k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      ... . +......+.+.   ......++++||++|.|+.++|+++.+.+.
T Consensus       117 ~~~~~~v~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  163 (198)
T cd04147         117 LEEERQVPAKDALSTVE---LDWNCGFVETSAKDNENVLEVFKELLRQAN  163 (198)
T ss_pred             ccccccccHHHHHHHHH---hhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence            652 1 11111111111   112356789999999999999999998765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.84  E-value=1.8e-20  Score=161.59  Aligned_cols=115  Identities=14%  Similarity=0.124  Sum_probs=91.1

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      +.+.+++||++|++.++..|..++.+++++|+|+|+++          ..++.+...|+..+...  ..+.|+++++||+
T Consensus        56 ~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~  123 (215)
T PTZ00132         56 GPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTS----------RITYKNVPNWHRDIVRV--CENIPIVLVGNKV  123 (215)
T ss_pred             eEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh--CCCCCEEEEEECc
Confidence            45899999999999999999999999999999999998          77888777777776543  2568999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |+.......... . +.   ...++.++++||++|.|+++.|.++++.+...
T Consensus       124 Dl~~~~~~~~~~-~-~~---~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~  170 (215)
T PTZ00132        124 DVKDRQVKARQI-T-FH---RKKNLQYYDISAKSNYNFEKPFLWLARRLTND  170 (215)
T ss_pred             cCccccCCHHHH-H-HH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence            986532221111 1 11   22456789999999999999999999988653

>cd04148 RGK RGK subfamily

Probab=99.84  E-value=1.6e-20  Score=162.58  Aligned_cols=116  Identities=15%  Similarity=0.080  Sum_probs=87.0

Q ss_pred             cCceeeeEecCCCcccccccccccc-CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeec
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFE-GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNK  247 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~-~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK  247 (313)
                      ....+.+||++|++  ......++. +++++|+|+|+++          ..+++.+..++..+.......++|+++|+||
T Consensus        48 ~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td----------~~S~~~~~~~~~~l~~~~~~~~~piilV~NK  115 (221)
T cd04148          48 EESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTD----------RSSFERASELRIQLRRNRQLEDRPIILVGNK  115 (221)
T ss_pred             EEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence            45789999999998  223345666 9999999999998          7888888888887766544467999999999


Q ss_pred             CCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         248 NDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       248 ~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      +|+........+....+.   ...++.+++|||+++.||.++|+++.+.+..
T Consensus       116 ~Dl~~~~~v~~~~~~~~a---~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~  164 (221)
T cd04148         116 SDLARSREVSVQEGRACA---VVFDCKFIETSAGLQHNVDELLEGIVRQIRL  164 (221)
T ss_pred             hhccccceecHHHHHHHH---HHcCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence            998653221111111221   1235678999999999999999999998864

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>KOG0395|consensus

Probab=99.84  E-value=7.1e-21  Score=160.96  Aligned_cols=137  Identities=20%  Similarity=0.138  Sum_probs=111.4

Q ss_pred             CCCccccccccceeeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHH
Q psy8318         142 PNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI  221 (313)
Q Consensus       142 ~~y~Pt~~dil~~~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~  221 (313)
                      ++|.||.+|.++...        .++-+...+.|+||+||+.+..+...|+.++++.+.|+++++          ..+|+
T Consensus        30 ~~y~ptied~y~k~~--------~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd----------~~SF~   91 (196)
T KOG0395|consen   30 EDYDPTIEDSYRKEL--------TVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITD----------RSSFE   91 (196)
T ss_pred             cccCCCccccceEEE--------EECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCC----------HHHHH
Confidence            569999998665433        222234778899999999999999999999999999999999          99999


Q ss_pred             HHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         222 ESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       222 e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      ++..+++.+...+...+.|++|||||+|+...+....+-...+.   ....+.+++|||+...||.++|..+.+.+..
T Consensus        92 ~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la---~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~  166 (196)
T KOG0395|consen   92 EAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALA---RSWGCAFIETSAKLNYNVDEVFYELVREIRL  166 (196)
T ss_pred             HHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHH---HhcCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence            99999999977777778999999999999875444333222222   3356779999999999999999999998865

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.83  E-value=2.8e-20  Score=154.75  Aligned_cols=117  Identities=16%  Similarity=0.254  Sum_probs=82.2

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHH-HHHHHHhCCCCCCCcEEEEeec
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK-LFDSICNSKWFMDTSIILFLNK  247 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~-~~~~~~~~~~~~~~piilv~NK  247 (313)
                      +.+.+.+|||+|++.++..|..++.+++++++|+|+++          ..+++.... |...+..  ...+.|+++++||
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~----------~~s~~~~~~~~~~~~~~--~~~~~piilv~nK  114 (175)
T cd01870          47 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKH--FCPNVPIILVGNK  114 (175)
T ss_pred             EEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh--hCCCCCEEEEeeC
Confidence            34678999999999999999999999999999999998          566666654 3343332  2347899999999


Q ss_pred             CCcccccccCCcccccC---------cCCCCC-CCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         248 NDLFQEKITKSPLTVCF---------PEYTDQ-KEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       248 ~Dl~~~k~~~~~l~~~f---------~~~~~~-~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +|+.........+...-         ..+... ....+++|||++|.||.++|+++.+..
T Consensus       115 ~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         115 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             hhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence            99865321111110000         000011 234689999999999999999998653

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.83  E-value=3.7e-20  Score=154.94  Aligned_cols=117  Identities=16%  Similarity=0.161  Sum_probs=93.9

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      ..+.+||++|++.++..|..++.+++++++|+|+++          ..+++++..++..+++.....+.|+++++||+|+
T Consensus        49 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  118 (180)
T cd04137          49 YHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTS----------RKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDL  118 (180)
T ss_pred             EEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhh
Confidence            568899999999999999999999999999999998          7888999999999887655567899999999998


Q ss_pred             ccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         251 FQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       251 ~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      ...+. ...+.....    ...++.++++||+++.|+.++|.|+.+.+....
T Consensus       119 ~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~  166 (180)
T cd04137         119 HTQRQVSTEEGKELA----ESWGAAFLESSARENENVEEAFELLIEEIEKVE  166 (180)
T ss_pred             hhcCccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            64321 111221111    113467899999999999999999999887553

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>KOG0088|consensus

Probab=99.83  E-value=6.4e-21  Score=149.66  Aligned_cols=119  Identities=14%  Similarity=0.174  Sum_probs=97.4

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ....+.||||+||++|..+-+.||++++++++|+|++|          ..+|+....|..++-. .....+.+++|+||+
T Consensus        60 ~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITD----------rdSFqKVKnWV~Elr~-mlGnei~l~IVGNKi  128 (218)
T KOG0088|consen   60 CRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITD----------RDSFQKVKNWVLELRT-MLGNEIELLIVGNKI  128 (218)
T ss_pred             ceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccc----------hHHHHHHHHHHHHHHH-HhCCeeEEEEecCcc
Confidence            34679999999999999999999999999999999999          8899999999888744 234568899999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      |+.+++....+-...   |+..-+..+++|||+++.||.++|+.++..+++..
T Consensus       129 DLEeeR~Vt~qeAe~---YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~  178 (218)
T KOG0088|consen  129 DLEEERQVTRQEAEA---YAESVGALYMETSAKDNVGISELFESLTAKMIEHS  178 (218)
T ss_pred             cHHHhhhhhHHHHHH---HHHhhchhheecccccccCHHHHHHHHHHHHHHHh
Confidence            998775443322222   21234567899999999999999999999998765

>cd01893 Miro1 Miro1 subfamily

Probab=99.82  E-value=7.2e-20  Score=151.30  Aligned_cols=117  Identities=13%  Similarity=0.110  Sum_probs=85.1

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .++++++||++|+..++..|..++.+++++++|+|+++          ..++++....|...+.... .+.|+++++||+
T Consensus        45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~----------~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~  113 (166)
T cd01893          45 ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDR----------PSTLERIRTKWLPLIRRLG-VKVPIILVGNKS  113 (166)
T ss_pred             CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhC-CCCCEEEEEEch
Confidence            45789999999999888889999999999999999998          6777776543333333222 378999999999


Q ss_pred             CcccccccC---CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         249 DLFQEKITK---SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       249 Dl~~~k~~~---~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      |+.......   ..+......+ . ....+++|||+++.|++++|+.+.+.++
T Consensus       114 Dl~~~~~~~~~~~~~~~~~~~~-~-~~~~~~e~Sa~~~~~v~~lf~~~~~~~~  164 (166)
T cd01893         114 DLRDGSSQAGLEEEMLPIMNEF-R-EIETCVECSAKTLINVSEVFYYAQKAVL  164 (166)
T ss_pred             hcccccchhHHHHHHHHHHHHH-h-cccEEEEeccccccCHHHHHHHHHHHhc
Confidence            997643321   1111111112 1 1126889999999999999999988775

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00154 Rab Rab family

Probab=99.82  E-value=5.4e-20  Score=149.41  Aligned_cols=111  Identities=18%  Similarity=0.234  Sum_probs=87.3

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ....+.+||++|+..+...|..++++++++|+|+|+++          ..++.+...++..+.... ..+.|+++++||+
T Consensus        47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~  115 (159)
T cd00154          47 KTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITN----------RESFENLDKWLKELKEYA-PENIPIILVGNKI  115 (159)
T ss_pred             EEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcc
Confidence            34789999999999999999999999999999999998          677787788777776542 2568999999999


Q ss_pred             Ccc-cccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHH
Q psy8318         249 DLF-QEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVT  294 (313)
Q Consensus       249 Dl~-~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~  294 (313)
                      |+. ..........+..    ...+..++++||+++.|+.++|.++.
T Consensus       116 D~~~~~~~~~~~~~~~~----~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         116 DLEDQRQVSTEEAQQFA----KENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             cccccccccHHHHHHHH----HHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            986 2222223333322    12457899999999999999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd00157 Rho Rho (Ras homology) family

Probab=99.82  E-value=8.9e-20  Score=150.90  Aligned_cols=113  Identities=15%  Similarity=0.145  Sum_probs=82.5

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ..+.+++||++|++.+...+..+++.++++++|+|.++          ..++.+....|...+... ..+.|+++++||+
T Consensus        46 ~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~  114 (171)
T cd00157          46 KQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDS----------PSSFENVKTKWIPEIRHY-CPNVPIILVGTKI  114 (171)
T ss_pred             EEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh-CCCCCEEEEEccH
Confidence            34679999999999888888888999999999999998          677777666444433322 2379999999999


Q ss_pred             CcccccccC------------CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         249 DLFQEKITK------------SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       249 Dl~~~k~~~------------~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      |+....-..            .........+   ....++++||++|.|+.++|++|.+
T Consensus       115 Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         115 DLRDDENTLKKLEKGKEPITPEEGEKLAKEI---GAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             HhhhchhhhhhcccCCCccCHHHHHHHHHHh---CCeEEEEeecCCCCCHHHHHHHHhh
Confidence            987643211            0111111111   2238999999999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PTZ00099 rab6; Provisional

Probab=99.82  E-value=6.2e-20  Score=153.20  Aligned_cols=116  Identities=20%  Similarity=0.204  Sum_probs=93.1

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      +.+++.||||+|++.++.+|..||++++++|+|+|+++          ..++++...|+..+.... ..++|++||+||+
T Consensus        27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~----------~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~   95 (176)
T PTZ00099         27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN----------RQSFENTTKWIQDILNER-GKDVIIALVGNKT   95 (176)
T ss_pred             EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCCCeEEEEEECc
Confidence            34889999999999999999999999999999999998          788998888888887643 3568999999999


Q ss_pred             Cccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         249 DLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       249 Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      |+...+ +...+.....    ...++.+++|||++|.||.++|+||.+.+..
T Consensus        96 DL~~~~~v~~~e~~~~~----~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         96 DLGDLRKVTYEEGMQKA----QEYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             ccccccCCCHHHHHHHH----HHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            986432 2222221111    2235568999999999999999999998865

>KOG0097|consensus

Probab=99.82  E-value=6.6e-20  Score=141.38  Aligned_cols=130  Identities=15%  Similarity=0.149  Sum_probs=99.0

Q ss_pred             eecceeE--EEEEe--cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318         157 KTTGIIE--THFTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN  232 (313)
Q Consensus       157 ~T~g~~~--~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~  232 (313)
                      .|+|+..  .-+++  +.+++++||++||+++|.....||+++.+.+.|+|++.          +........|+... .
T Consensus        42 htigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditr----------rstynhlsswl~da-r  110 (215)
T KOG0097|consen   42 HTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDA-R  110 (215)
T ss_pred             cccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehh----------hhhhhhHHHHHhhh-h
Confidence            4556432  23333  56899999999999999999999999999999999997          44444444444443 2


Q ss_pred             CCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         233 SKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       233 ~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +-...+..++|++||.|+..++-..-+..+.|.+-   .++.+.++||++|+||++.|-...+.|.++
T Consensus       111 ~ltnpnt~i~lignkadle~qrdv~yeeak~faee---ngl~fle~saktg~nvedafle~akkiyqn  175 (215)
T KOG0097|consen  111 NLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEE---NGLMFLEASAKTGQNVEDAFLETAKKIYQN  175 (215)
T ss_pred             ccCCCceEEEEecchhhhhhcccCcHHHHHHHHhh---cCeEEEEecccccCcHHHHHHHHHHHHHHh
Confidence            23335788999999999987765555555556543   788999999999999999999988888754

>cd00876 Ras Ras family

Probab=99.81  E-value=1.4e-19  Score=147.84  Aligned_cols=114  Identities=21%  Similarity=0.137  Sum_probs=90.3

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+++||++|+..+...+..++++++++++|+|+++          ..++.+...++..+.+.....++|+++++||+|
T Consensus        46 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  115 (160)
T cd00876          46 TYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITD----------RESFEEIKGYREQILRVKDDEDIPIVLVGNKCD  115 (160)
T ss_pred             EEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCc
Confidence            4688999999999999999999999999999999998          778888888888887654435799999999999


Q ss_pred             ccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         250 LFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       250 l~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +...+ ...........    ..+..++++||+++.|+.++|++|.+.+
T Consensus       116 ~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~~~~i~~l~~~l~~~i  160 (160)
T cd00876         116 LENERQVSKEEGKALAK----EWGCPFIETSAKDNINIDEVFKLLVREI  160 (160)
T ss_pred             ccccceecHHHHHHHHH----HcCCcEEEeccCCCCCHHHHHHHHHhhC
Confidence            87632 22222222222    1236789999999999999999998753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04129 Rho2 Rho2 subfamily

Probab=99.81  E-value=2.4e-19  Score=151.22  Aligned_cols=118  Identities=14%  Similarity=0.156  Sum_probs=85.5

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHH-HHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK-LFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~-~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      ..+.+||++|++.++..+..++.+++++++|+|+++          ..++++... |+..+...  ..++|++||+||+|
T Consensus        49 ~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~----------~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~D  116 (187)
T cd04129          49 VQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDT----------PDSLENVRTKWIEEVRRY--CPNVPVILVGLKKD  116 (187)
T ss_pred             EEEEEEECCCChhccccchhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChh
Confidence            578999999999888888788899999999999998          667777654 55555332  24699999999999


Q ss_pred             cccccccCCc----------ccccCcCCCCCCC-eEEEEeecccCcCHHHHHHHHHHHHHHhhhh
Q psy8318         250 LFQEKITKSP----------LTVCFPEYTDQKE-IYTHFTCATDTSNIQFVFDAVTDVIIKANLK  303 (313)
Q Consensus       250 l~~~k~~~~~----------l~~~f~~~~~~~~-~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~  303 (313)
                      +..+....+.          ....+.   +..+ +.+++|||++|.||+++|+++.+.++...-+
T Consensus       117 l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~  178 (187)
T cd04129         117 LRQDAVAKEEYRTQRFVPIQQGKRVA---KEIGAKKYMECSALTGEGVDDVFEAATRAALLVRKS  178 (187)
T ss_pred             hhhCcccccccccCCcCCHHHHHHHH---HHhCCcEEEEccCCCCCCHHHHHHHHHHHHhcccCc
Confidence            8543221111          011111   1123 4689999999999999999999888654433

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.79  E-value=4.6e-19  Score=150.85  Aligned_cols=75  Identities=19%  Similarity=0.216  Sum_probs=64.4

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC---------------
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK---------------  234 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~---------------  234 (313)
                      .+.+++||++|++.++.+|..||++++++|+|+|+++          ..+++....|+.++.+..               
T Consensus        53 ~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn----------~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~  122 (202)
T cd04102          53 TFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTN----------RKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDS  122 (202)
T ss_pred             EEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcC----------hHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence            3689999999999999999999999999999999999          888888888888886531               


Q ss_pred             ---CCCCCcEEEEeecCCccccc
Q psy8318         235 ---WFMDTSIILFLNKNDLFQEK  254 (313)
Q Consensus       235 ---~~~~~piilv~NK~Dl~~~k  254 (313)
                         ...++|++|||||.|+..++
T Consensus       123 ~~~~~~~~PiilVGnK~Dl~~~r  145 (202)
T cd04102         123 EQFGGNQIPLLVIGTKLDQIPEK  145 (202)
T ss_pred             cccCCCCceEEEEEECccchhhc
Confidence               12468999999999987653

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>KOG0077|consensus

Probab=99.78  E-value=6.7e-20  Score=145.18  Aligned_cols=131  Identities=19%  Similarity=0.291  Sum_probs=108.7

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      +||..-..+.+.+++.+++.+|.||+..-|+.|..||-.|++++|.||..|          ..++.|++..++.++....
T Consensus        49 vPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d----------~er~~es~~eld~ll~~e~  118 (193)
T KOG0077|consen   49 VPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYD----------QERFAESKKELDALLSDES  118 (193)
T ss_pred             CCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhh----------HHHhHHHHHHHHHHHhHHH
Confidence            444455566778899999999999999999999999999999999999999          8999999999999999888


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCcCCC-------------CCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYT-------------DQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~-------------~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ..++|+++++||+|...+ .++.+++..+..++             ..+++..+.||...+.+--+.|.|+...+
T Consensus       119 la~vp~lilgnKId~p~a-~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  119 LATVPFLILGNKIDIPYA-ASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI  192 (193)
T ss_pred             HhcCcceeecccccCCCc-ccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence            899999999999999875 34434333222111             34677889999999999999999987754

>PLN00023 GTP-binding protein; Provisional

Probab=99.78  E-value=1.5e-18  Score=155.20  Aligned_cols=74  Identities=18%  Similarity=0.246  Sum_probs=62.9

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC-----------CCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW-----------FMD  238 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~-----------~~~  238 (313)
                      .+.++||||+||+.++.+|..||++++++|+|+|+++          ..++++...|++.+.....           ..+
T Consensus        82 ~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITd----------r~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~  151 (334)
T PLN00023         82 DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQ----------RRTKTSLQKWASEVAATGTFSAPLGSGGPGGLP  151 (334)
T ss_pred             eEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence            3679999999999999999999999999999999998          7788888888888765321           235


Q ss_pred             CcEEEEeecCCcccc
Q psy8318         239 TSIILFLNKNDLFQE  253 (313)
Q Consensus       239 ~piilv~NK~Dl~~~  253 (313)
                      +|++||+||+|+..+
T Consensus       152 ipIILVGNK~DL~~~  166 (334)
T PLN00023        152 VPYIVIGNKADIAPK  166 (334)
T ss_pred             CcEEEEEECcccccc
Confidence            899999999998653

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.77  E-value=3.7e-18  Score=147.25  Aligned_cols=121  Identities=17%  Similarity=0.169  Sum_probs=89.3

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+++.+|||+||+.++.+|..|+.+++++++|+|.++          ..++.+....+...+......+.|+++++||+|
T Consensus        53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~----------~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~D  122 (219)
T COG1100          53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTL----------RESSDELTEEWLEELRELAPDDVPILLVGNKID  122 (219)
T ss_pred             EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEeccc----------chhhhHHHHHHHHHHHHhCCCCceEEEEecccc
Confidence            5779999999999999999999999999999999998          567777776666555543335789999999999


Q ss_pred             cccccccCC----------cc--cccCcCCCCCCCeEEEEeecc--cCcCHHHHHHHHHHHHHHh
Q psy8318         250 LFQEKITKS----------PL--TVCFPEYTDQKEIYTHFTCAT--DTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       250 l~~~k~~~~----------~l--~~~f~~~~~~~~~~~~~tSA~--~~~~v~~~f~~i~~~i~~~  300 (313)
                      ++.+.....          .+  ..............++++||+  ++.+|.++|..+...+...
T Consensus       123 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~  187 (219)
T COG1100         123 LFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEE  187 (219)
T ss_pred             cccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHh
Confidence            987642111          11  011110101112237899999  9999999999999988643

>KOG0083|consensus

Probab=99.76  E-value=3e-19  Score=136.47  Aligned_cols=133  Identities=18%  Similarity=0.194  Sum_probs=106.3

Q ss_pred             eeecceeEE--EEEec--CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318         156 VKTTGIIET--HFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC  231 (313)
Q Consensus       156 ~~T~g~~~~--~~~~~--~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~  231 (313)
                      +.|+|+...  .++++  .+++++|||+||+++|+....||++++++++++|+++          ..+++....|+.++-
T Consensus        28 istvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydian----------kasfdn~~~wlsei~   97 (192)
T KOG0083|consen   28 ISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIAN----------KASFDNCQAWLSEIH   97 (192)
T ss_pred             eeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeeccc----------chhHHHHHHHHHHHH
Confidence            577786543  44554  4899999999999999999999999999999999998          889999888888874


Q ss_pred             hCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318         232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANL  302 (313)
Q Consensus       232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~  302 (313)
                      .- .-..+.+.+++||+|+..++..+.+-.+.+.+.   .++++.+|||++|-||+-.|-.|.+.+++..+
T Consensus        98 ey-~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~---y~ipfmetsaktg~nvd~af~~ia~~l~k~~~  164 (192)
T KOG0083|consen   98 EY-AKEAVALMLLGNKCDLAHERAVKRDDGEKLAEA---YGIPFMETSAKTGFNVDLAFLAIAEELKKLKM  164 (192)
T ss_pred             HH-HHhhHhHhhhccccccchhhccccchHHHHHHH---HCCCceeccccccccHhHHHHHHHHHHHHhcc
Confidence            32 223578899999999966555554444433322   47889999999999999999999999987654

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.76  E-value=9.2e-18  Score=138.56  Aligned_cols=124  Identities=19%  Similarity=0.192  Sum_probs=81.4

Q ss_pred             ecceeEEEEEecCceeeeEecCCCccccccccc----------cccCCcEEEEEEecCCcccccccccccccHHHHHHHH
Q psy8318         158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIH----------CFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF  227 (313)
Q Consensus       158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~----------~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~  227 (313)
                      |.++....+.+++..+++|||+|+.. +..|..          ....++++|+|+|.++..        ..++++...++
T Consensus        34 t~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~--------~~~~~~~~~~~  104 (168)
T cd01897          34 TKSLFVGHFDYKYLRWQVIDTPGLLD-RPLEERNTIEMQAITALAHLRAAVLFLFDPSETC--------GYSLEEQLSLF  104 (168)
T ss_pred             ccceeEEEEccCceEEEEEECCCcCC-ccccCCchHHHHHHHHHHhccCcEEEEEeCCccc--------ccchHHHHHHH
Confidence            44555555566778999999999842 222211          112368999999998721        11345555666


Q ss_pred             HHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         228 DSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       228 ~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ..+...  ..+.|+++++||+|+..... ..+. ..+.   ....+.+++|||++|.|++++|+|+.+.+
T Consensus       105 ~~l~~~--~~~~pvilv~NK~Dl~~~~~-~~~~-~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         105 EEIKPL--FKNKPVIVVLNKIDLLTFED-LSEI-EEEE---ELEGEEVLKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             HHHHhh--cCcCCeEEEEEccccCchhh-HHHH-HHhh---hhccCceEEEEecccCCHHHHHHHHHHHh
Confidence            665432  24789999999999865321 1111 1122   22456789999999999999999999876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04171 SelB SelB subfamily

Probab=99.75  E-value=6.6e-18  Score=138.50  Aligned_cols=121  Identities=12%  Similarity=0.129  Sum_probs=80.3

Q ss_pred             ceeEEEEEec-CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCC
Q psy8318         160 GIIETHFTFK-DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMD  238 (313)
Q Consensus       160 g~~~~~~~~~-~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~  238 (313)
                      +.....+.+. +..+++|||+|++.+......++.+++++++|+|+++           ....++...+..+ ..  ...
T Consensus        39 ~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~-----------~~~~~~~~~~~~~-~~--~~~  104 (164)
T cd04171          39 DLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADE-----------GIMPQTREHLEIL-EL--LGI  104 (164)
T ss_pred             EeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCC-----------CccHhHHHHHHHH-HH--hCC
Confidence            3333344554 7899999999999887777778899999999999975           1222333322221 11  122


Q ss_pred             CcEEEEeecCCccccc-c--cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         239 TSIILFLNKNDLFQEK-I--TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       239 ~piilv~NK~Dl~~~k-~--~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      .|+++++||+|+..+. .  ...++.+.+... ......++++||++|+|+.++|+++..
T Consensus       105 ~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         105 KRGLVVLTKADLVDEDWLELVEEEIRELLAGT-FLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             CcEEEEEECccccCHHHHHHHHHHHHHHHHhc-CcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            4999999999986532 1  112333333221 113467899999999999999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG4252|consensus

Probab=99.75  E-value=2.5e-19  Score=143.52  Aligned_cols=124  Identities=11%  Similarity=0.165  Sum_probs=100.5

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .++++.+||++||+.+......||+++.+.++|++-+|          ..+|+....|.+.+.+.  ...+|.++|-||+
T Consensus        67 Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTD----------r~SFea~~~w~~kv~~e--~~~IPtV~vqNKI  134 (246)
T KOG4252|consen   67 EDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTD----------RYSFEATLEWYNKVQKE--TERIPTVFVQNKI  134 (246)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHhccccceEEEEeccc----------HHHHHHHHHHHHHHHHH--hccCCeEEeeccc
Confidence            56889999999999999999999999999999999999          89999999999998764  3579999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhhhcCC
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKDCGI  307 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~~~~~  307 (313)
                      |+.+.........+.+.   +..++..+.||++..-||.++|..+.+.+.+..-++++.
T Consensus       135 Dlveds~~~~~evE~la---k~l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq~~~~  190 (246)
T KOG4252|consen  135 DLVEDSQMDKGEVEGLA---KKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQSLNA  190 (246)
T ss_pred             hhhHhhhcchHHHHHHH---HHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Confidence            98875433333222222   224556788999999999999999999887765444443

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.75  E-value=1.2e-17  Score=135.09  Aligned_cols=115  Identities=21%  Similarity=0.179  Sum_probs=81.4

Q ss_pred             EEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEE
Q psy8318         166 FTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSII  242 (313)
Q Consensus       166 ~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~pii  242 (313)
                      +..++  ..+.+||++|+..++.+|..++..++++++++|++.+         ...+.+.. .+...+... ...+.|++
T Consensus        43 ~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~---------v~~~~~~~~~~~~~~~~~-~~~~~p~i  112 (161)
T TIGR00231        43 IEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVIL---------VLDVEEILEKQTKEIIHH-AESNVPII  112 (161)
T ss_pred             EEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeee---------ehhhhhHhHHHHHHHHHh-cccCCcEE
Confidence            45555  7889999999999999999999999999999999873         13344444 233333221 11278999


Q ss_pred             EEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHH
Q psy8318         243 LFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVT  294 (313)
Q Consensus       243 lv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~  294 (313)
                      +++||+|+.... ........+...   ....++++||++|.|+.++|++|.
T Consensus       113 vv~nK~D~~~~~-~~~~~~~~~~~~---~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       113 LVGNKIDLRDAK-LKTHVAFLFAKL---NGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             EEEEcccCCcch-hhHHHHHHHhhc---cCCceEEeecCCCCCHHHHHHHhh
Confidence            999999986543 122223333333   334589999999999999999874

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01890 LepA LepA subfamily

Probab=99.74  E-value=1.2e-17  Score=139.33  Aligned_cols=110  Identities=13%  Similarity=0.129  Sum_probs=77.5

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      +++.+++|||+|++.++..|..++++++++|+|+|+++          ..... ....+..+..    .++|+++++||+
T Consensus        65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~----------~~~~~-~~~~~~~~~~----~~~~iiiv~NK~  129 (179)
T cd01890          65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQ----------GVEAQ-TLANFYLALE----NNLEIIPVINKI  129 (179)
T ss_pred             CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCC----------CccHh-hHHHHHHHHH----cCCCEEEEEECC
Confidence            46789999999999999999999999999999999986          22222 2222222322    357999999999


Q ss_pred             Cccccccc--CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         249 DLFQEKIT--KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       249 Dl~~~k~~--~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      |+......  ...+.+.+. .   ....++++||++|+|+.++|+++.+.+
T Consensus       130 Dl~~~~~~~~~~~~~~~~~-~---~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         130 DLPSADPERVKQQIEDVLG-L---DPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             CCCcCCHHHHHHHHHHHhC-C---CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            98542111  112222211 1   113478999999999999999998754

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01898 Obg Obg subfamily

Probab=99.73  E-value=1.9e-17  Score=136.83  Aligned_cols=117  Identities=15%  Similarity=0.137  Sum_probs=76.1

Q ss_pred             EecCc-eeeeEecCCCc----ccccccccc---ccCCcEEEEEEecCCccccccccccc-ccHHHHHHHHHHHHhC-CCC
Q psy8318         167 TFKDL-HFKMFDVGGQR----SERKKWIHC---FEGVTAIIFCVALSGYDSVLAEDEEM-NRMIESMKLFDSICNS-KWF  236 (313)
Q Consensus       167 ~~~~~-~~~i~D~~Gq~----~~r~~w~~~---~~~~~~iifv~dls~~d~~~~e~~~~-~~l~e~~~~~~~~~~~-~~~  236 (313)
                      .+++. .+.+|||+|+.    ..+.++..+   ++.++++++|+|+++          . +.++....+.+.+... +..
T Consensus        43 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~----------~~~~~~~~~~~~~~l~~~~~~~  112 (170)
T cd01898          43 RVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSG----------DDDPVEDYKTIRNELELYNPEL  112 (170)
T ss_pred             EcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCC----------CCCHHHHHHHHHHHHHHhCccc
Confidence            34454 89999999973    222333333   446999999999997          4 3444444444444332 123


Q ss_pred             CCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      .++|+++|+||+|+.........+.......   ....++++||+++.|+.++|+++.+.
T Consensus       113 ~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         113 LEKPRIVVLNKIDLLDEEELFELLKELLKEL---WGKPVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             cccccEEEEEchhcCCchhhHHHHHHHHhhC---CCCCEEEEecCCCCCHHHHHHHHHhh
Confidence            5789999999999865322222222222211   24568999999999999999998864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK04213 GTP-binding protein; Provisional

Probab=99.71  E-value=5.9e-17  Score=138.04  Aligned_cols=121  Identities=15%  Similarity=0.192  Sum_probs=73.3

Q ss_pred             eeeeEecCC-----------Ccccccccccccc----CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         172 HFKMFDVGG-----------QRSERKKWIHCFE----GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       172 ~~~i~D~~G-----------q~~~r~~w~~~~~----~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      .+.+|||+|           ++.++..|..|+.    .++++++|+|.+++.+....-...........++..+ ..   
T Consensus        53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~---  128 (201)
T PRK04213         53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFL-RE---  128 (201)
T ss_pred             ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHH-HH---
Confidence            689999999           6778888888874    3578889999876432110000001111122223322 22   


Q ss_pred             CCCcEEEEeecCCcccccc-cCCcccccCcC---CCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKI-TKSPLTVCFPE---YTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~-~~~~l~~~f~~---~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      .++|+++|+||+|+..+.. ...++.+.+..   + ......+++|||++| |++++|+||.+.+.
T Consensus       129 ~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~  192 (201)
T PRK04213        129 LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPW-RQWQDIIAPISAKKG-GIEELKEAIRKRLH  192 (201)
T ss_pred             cCCCeEEEEECccccCcHHHHHHHHHHHhcCCccc-cccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence            3689999999999865320 11122222221   1 111125789999999 99999999998764

>KOG0096|consensus

Probab=99.71  E-value=5.6e-17  Score=131.45  Aligned_cols=129  Identities=15%  Similarity=0.153  Sum_probs=104.1

Q ss_pred             eeeecceeEEEEEe----cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH
Q psy8318         155 RVKTTGIIETHFTF----KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI  230 (313)
Q Consensus       155 ~~~T~g~~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~  230 (313)
                      +.+|+|+..+...+    +.+++..|||+||+.+..+...||-...|.|+++|++.          ......+..|...+
T Consensus        39 y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVts----------r~t~~n~~rwhrd~  108 (216)
T KOG0096|consen   39 YPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTS----------RFTYKNVPRWHRDL  108 (216)
T ss_pred             ccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeee----------hhhhhcchHHHHHH
Confidence            45777876665544    34899999999999999999999999999999999998          56667777777777


Q ss_pred             HhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         231 CNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       231 ~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +..  ..++||++.|||.|+...+.....+.-.     ..+++.++++||+..-|....|.|+++.+...
T Consensus       109 ~rv--~~NiPiv~cGNKvDi~~r~~k~k~v~~~-----rkknl~y~~iSaksn~NfekPFl~LarKl~G~  171 (216)
T KOG0096|consen  109 VRV--RENIPIVLCGNKVDIKARKVKAKPVSFH-----RKKNLQYYEISAKSNYNFERPFLWLARKLTGD  171 (216)
T ss_pred             HHH--hcCCCeeeeccceeccccccccccceee-----ecccceeEEeecccccccccchHHHhhhhcCC
Confidence            653  2469999999999998765455444322     45788999999999999999999999987643

>cd01878 HflX HflX subfamily

Probab=99.70  E-value=1.6e-16  Score=135.69  Aligned_cols=112  Identities=15%  Similarity=0.171  Sum_probs=72.8

Q ss_pred             EEEecC-ceeeeEecCCCccc---------cccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         165 HFTFKD-LHFKMFDVGGQRSE---------RKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       165 ~~~~~~-~~~~i~D~~Gq~~~---------r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      .+.+.+ ..+.+|||+|....         +..+ ..+.+++++++|+|+++          ........ .+..++...
T Consensus        82 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~----------~~~~~~~~-~~~~~l~~~  149 (204)
T cd01878          82 RLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASD----------PDYEEQIE-TVEKVLKEL  149 (204)
T ss_pred             EEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCC----------CChhhHHH-HHHHHHHHc
Confidence            344444 48999999998332         2222 23678999999999997          33333322 222222322


Q ss_pred             CCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         235 WFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      ...+.|+++|+||+|+..+....    ..   + ......++++||+++.|+.+++++|.+.
T Consensus       150 ~~~~~~viiV~NK~Dl~~~~~~~----~~---~-~~~~~~~~~~Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         150 GAEDIPMILVLNKIDLLDDEELE----ER---L-EAGRPDAVFISAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             CcCCCCEEEEEEccccCChHHHH----HH---h-hcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence            33568999999999986542211    11   1 2234568999999999999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG0393|consensus

Probab=99.70  E-value=2.7e-17  Score=136.70  Aligned_cols=136  Identities=17%  Similarity=0.228  Sum_probs=99.4

Q ss_pred             CCCccccccccceeeeecceeEEEE-EecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccH
Q psy8318         142 PNYIPTQQDVLRTRVKTTGIIETHF-TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRM  220 (313)
Q Consensus       142 ~~y~Pt~~dil~~~~~T~g~~~~~~-~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l  220 (313)
                      .+|+||.-|-+.+..        .+ +-+.+.+.+|||+||+.+.++|+-.|.++|.+|.||++.+          +.++
T Consensus        31 ~~yvPTVFdnys~~v--------~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~----------p~S~   92 (198)
T KOG0393|consen   31 EEYVPTVFDNYSANV--------TVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVS----------PESF   92 (198)
T ss_pred             ccccCeEEccceEEE--------EecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCC----------hhhH
Confidence            679999876554432        12 1234779999999999999999999999999999999999          8888


Q ss_pred             HHHHH-HHHHHHhCCCCCCCcEEEEeecCCcccccccCCccc----------c--cCcCCCCCCC-eEEEEeecccCcCH
Q psy8318         221 IESMK-LFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLT----------V--CFPEYTDQKE-IYTHFTCATDTSNI  286 (313)
Q Consensus       221 ~e~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~----------~--~f~~~~~~~~-~~~~~tSA~~~~~v  286 (313)
                      ++... |+-++.. . ..++|++|||+|.||.........+.          +  .++   +..+ ..+++|||++..|+
T Consensus        93 ~nv~~kW~pEi~~-~-cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA---~~iga~~y~EcSa~tq~~v  167 (198)
T KOG0393|consen   93 ENVKSKWIPEIKH-H-CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELA---KEIGAVKYLECSALTQKGV  167 (198)
T ss_pred             HHHHhhhhHHHHh-h-CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHH---HHhCcceeeeehhhhhCCc
Confidence            88554 5555533 2 36899999999999975321111110          0  011   1122 57899999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy8318         287 QFVFDAVTDVIIKA  300 (313)
Q Consensus       287 ~~~f~~i~~~i~~~  300 (313)
                      .++|+......+..
T Consensus       168 ~~vF~~a~~~~l~~  181 (198)
T KOG0393|consen  168 KEVFDEAIRAALRP  181 (198)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999888754

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.69  E-value=9.2e-17  Score=137.20  Aligned_cols=118  Identities=17%  Similarity=0.235  Sum_probs=84.3

Q ss_pred             cCceeeeEecCCCccccccccccccCC-cEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC--CCCCcEEEEe
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGV-TAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW--FMDTSIILFL  245 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~-~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~--~~~~piilv~  245 (313)
                      .+..+.+||++||..++..|..+++++ +++|||+|+++.         .+++.++..++..++....  ..++|++|++
T Consensus        46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~---------~~~~~~~~~~l~~il~~~~~~~~~~pvliv~  116 (203)
T cd04105          46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATF---------QKNLKDVAEFLYDILTDLEKVKNKIPVLIAC  116 (203)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccc---------hhHHHHHHHHHHHHHHHHhhccCCCCEEEEe
Confidence            357899999999999999999999998 999999999982         2677788777777665432  2579999999


Q ss_pred             ecCCccccccc---CCcccc------------------------cC-----cC--CC-CCCCeEEEEeecccCc-CHHHH
Q psy8318         246 NKNDLFQEKIT---KSPLTV------------------------CF-----PE--YT-DQKEIYTHFTCATDTS-NIQFV  289 (313)
Q Consensus       246 NK~Dl~~~k~~---~~~l~~------------------------~f-----~~--~~-~~~~~~~~~tSA~~~~-~v~~~  289 (313)
                      ||+|++.+.-.   ...+..                        .+     ..  |. ...++.+.++|++.+. ++..+
T Consensus       117 NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~  196 (203)
T cd04105         117 NKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGW  196 (203)
T ss_pred             cchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhH
Confidence            99998753110   000000                        00     00  10 1235677889998876 69999


Q ss_pred             HHHHHH
Q psy8318         290 FDAVTD  295 (313)
Q Consensus       290 f~~i~~  295 (313)
                      .+||.+
T Consensus       197 ~~w~~~  202 (203)
T cd04105         197 EEWIDE  202 (203)
T ss_pred             HHHHhh
Confidence            999865

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.69  E-value=2.3e-16  Score=130.05  Aligned_cols=114  Identities=16%  Similarity=0.046  Sum_probs=78.5

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .+..+.+|||+|+..++..|..++..++++++|+|.++.+           ..+....+..+..    .+.|+++++||+
T Consensus        48 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~-----------~~~~~~~~~~~~~----~~~p~ivv~NK~  112 (168)
T cd01887          48 KIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGV-----------MPQTIEAIKLAKA----ANVPFIVALNKI  112 (168)
T ss_pred             CcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCc-----------cHHHHHHHHHHHH----cCCCEEEEEEce
Confidence            3688999999999999999999999999999999999732           1222223332221    357999999999


Q ss_pred             Cccccccc--CCcccccCcC-C-CCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         249 DLFQEKIT--KSPLTVCFPE-Y-TDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       249 Dl~~~k~~--~~~l~~~f~~-~-~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      |+......  ...+...... . .....+.++++||++|.|+.++++++.+..
T Consensus       113 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (168)
T cd01887         113 DKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA  165 (168)
T ss_pred             ecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence            98643111  0111111000 0 012346789999999999999999998754

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.68  E-value=2.9e-16  Score=133.16  Aligned_cols=121  Identities=17%  Similarity=0.180  Sum_probs=81.6

Q ss_pred             EEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318         163 ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII  242 (313)
Q Consensus       163 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii  242 (313)
                      ...+..++..+++|||+|++.++..|..++++++++++|+|+++           ........++.....    .++|++
T Consensus        57 ~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~-----------~~~~~~~~~~~~~~~----~~~p~i  121 (194)
T cd01891          57 NTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE-----------GPMPQTRFVLKKALE----LGLKPI  121 (194)
T ss_pred             eeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCC-----------CccHHHHHHHHHHHH----cCCCEE
Confidence            34556678899999999999999999999999999999999986           122233333444332    368999


Q ss_pred             EEeecCCccccccc--CCcccccCcCCC---CCCCeEEEEeecccCcCHH------HHHHHHHHHHH
Q psy8318         243 LFLNKNDLFQEKIT--KSPLTVCFPEYT---DQKEIYTHFTCATDTSNIQ------FVFDAVTDVII  298 (313)
Q Consensus       243 lv~NK~Dl~~~k~~--~~~l~~~f~~~~---~~~~~~~~~tSA~~~~~v~------~~f~~i~~~i~  298 (313)
                      +++||+|+..+...  ..++.+.+..+.   ...++.++++||++|.|+.      +...++.+.|.
T Consensus       122 iv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~  188 (194)
T cd01891         122 VVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTII  188 (194)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccccccchhhHHHHHHHHH
Confidence            99999998643221  122222222111   1235678999999998874      33555555553

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.68  E-value=3.6e-16  Score=142.72  Aligned_cols=120  Identities=13%  Similarity=0.178  Sum_probs=82.4

Q ss_pred             EEe-cCceeeeEecCCCcc-------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC-CCC
Q psy8318         166 FTF-KDLHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS-KWF  236 (313)
Q Consensus       166 ~~~-~~~~~~i~D~~Gq~~-------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~-~~~  236 (313)
                      +.+ ++.++.+||++|...       ....|..+++.++++|+|+|+++          ..++++...|.+++... +.+
T Consensus       200 v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~----------~~s~e~~~~~~~EL~~~~~~L  269 (335)
T PRK12299        200 VRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEA----------VDPVEDYKTIRNELEKYSPEL  269 (335)
T ss_pred             EEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCC----------CCCHHHHHHHHHHHHHhhhhc
Confidence            444 457899999999732       33456667788999999999997          33455544555555332 334


Q ss_pred             CCCcEEEEeecCCcccccccCC-cccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKITKS-PLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~~~-~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      .+.|++||+||+|+..+..... ......    ...++.++++||++++||.+++++|.+.+..
T Consensus       270 ~~kp~IIV~NKiDL~~~~~~~~~~~~~~~----~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        270 ADKPRILVLNKIDLLDEEEEREKRAALEL----AALGGPVFLISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             ccCCeEEEEECcccCCchhHHHHHHHHHH----HhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            5789999999999865321111 111111    1123578999999999999999999988754

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.66  E-value=1.1e-16  Score=128.53  Aligned_cols=99  Identities=11%  Similarity=0.053  Sum_probs=62.7

Q ss_pred             eeEecCCCc-----cccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         174 KMFDVGGQR-----SERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       174 ~i~D~~Gq~-----~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .+|||+|+.     .++.... .+++++++|+|+|+++-          .++.. ..+. ...      ..|+++++||+
T Consensus        38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~----------~s~~~-~~~~-~~~------~~p~ilv~NK~   98 (142)
T TIGR02528        38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDP----------ESRFP-PGFA-SIF------VKPVIGLVTKI   98 (142)
T ss_pred             eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCC----------CcCCC-hhHH-Hhc------cCCeEEEEEee
Confidence            689999983     2333322 47899999999999983          33222 1222 221      23999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHH
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVT  294 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~  294 (313)
                      |+...........+.....   ....++++||++|.|+.++|+++.
T Consensus        99 Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528        99 DLAEADVDIERAKELLETA---GAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             ccCCcccCHHHHHHHHHHc---CCCcEEEEecCCCCCHHHHHHHHh
Confidence            9864321111212222211   123678999999999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.66  E-value=4.5e-16  Score=124.44  Aligned_cols=112  Identities=19%  Similarity=0.213  Sum_probs=83.4

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      +..+.+||++|+......|..++..++++++|+|+++          ...+.....++..........+.|+++++||+|
T Consensus        44 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D  113 (157)
T cd00882          44 KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD----------RESFENVKEWLLLILINKEGENIPIILVGNKID  113 (157)
T ss_pred             EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccc
Confidence            5789999999999988889889999999999999998          555565555533333334456799999999999


Q ss_pred             cccccccCCcc-cccCcCCCCCCCeEEEEeecccCcCHHHHHHHHH
Q psy8318         250 LFQEKITKSPL-TVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVT  294 (313)
Q Consensus       250 l~~~k~~~~~l-~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~  294 (313)
                      +.......... ...+.   ....+.++++||.++.|+.++++||.
T Consensus       114 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         114 LPEERVVSEEELAEQLA---KELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             cccccchHHHHHHHHHH---hhcCCcEEEEecCCCCChHHHHHHHh
Confidence            86542221111 11122   22457899999999999999999985

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.65  E-value=1.3e-15  Score=127.80  Aligned_cols=119  Identities=13%  Similarity=0.101  Sum_probs=83.3

Q ss_pred             EEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEE
Q psy8318         164 THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIIL  243 (313)
Q Consensus       164 ~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piil  243 (313)
                      ..+...+..+.+||++|+..++..|..++..++++++|+|.++.          . .......+.....    .+.|+++
T Consensus        55 ~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~-~~~~~~~~~~~~~----~~~~i~i  119 (189)
T cd00881          55 ATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEG----------V-QPQTREHLRIARE----GGLPIIV  119 (189)
T ss_pred             EEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCC----------C-cHHHHHHHHHHHH----CCCCeEE
Confidence            34455678999999999999999999999999999999998862          1 1222233333322    4689999


Q ss_pred             EeecCCcccc-ccc--CCcccccCcCCC----------CCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         244 FLNKNDLFQE-KIT--KSPLTVCFPEYT----------DQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       244 v~NK~Dl~~~-k~~--~~~l~~~f~~~~----------~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ++||+|+..+ ...  ...+.+.+....          ......++++||++|.|+.++++++.+.+
T Consensus       120 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         120 AINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             EEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence            9999998752 111  112222222210          12356789999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.64  E-value=1.3e-15  Score=123.56  Aligned_cols=125  Identities=15%  Similarity=0.160  Sum_probs=98.7

Q ss_pred             eeeecceeEEEEEecC-ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC
Q psy8318         155 RVKTTGIIETHFTFKD-LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS  233 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~-~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~  233 (313)
                      +..|+++......+.+ ..+.+++|+||++++.+|..+.+++.++|+++|.+.          +..+ ++..+++-+-..
T Consensus        51 r~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~----------~~~~-~a~~ii~f~~~~  119 (187)
T COG2229          51 RPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSR----------PITF-HAEEIIDFLTSR  119 (187)
T ss_pred             cceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCC----------Ccch-HHHHHHHHHhhc
Confidence            4577888888777765 999999999999999999999999999999999998          5555 555555544322


Q ss_pred             CCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         234 KWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       234 ~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      .   .+|++|+.||+|++.+ .+.+.+.+++..-  ..++..+.++|.+++++.+.++.+...
T Consensus       120 ~---~ip~vVa~NK~DL~~a-~ppe~i~e~l~~~--~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         120 N---PIPVVVAINKQDLFDA-LPPEKIREALKLE--LLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             c---CCCEEEEeeccccCCC-CCHHHHHHHHHhc--cCCCceeeeecccchhHHHHHHHHHhh
Confidence            1   1899999999999986 5666666665422  136789999999999999988877654

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.64  E-value=7.1e-16  Score=127.96  Aligned_cols=125  Identities=14%  Similarity=0.110  Sum_probs=78.4

Q ss_pred             EEEec-CceeeeEecCCCc----cccccc---cccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC-
Q psy8318         165 HFTFK-DLHFKMFDVGGQR----SERKKW---IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW-  235 (313)
Q Consensus       165 ~~~~~-~~~~~i~D~~Gq~----~~r~~w---~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~-  235 (313)
                      .+.++ +..+.+|||+|+.    ..+.++   ..++.+++++++|+|+++.+..    ...+.+.+...+...+..... 
T Consensus        37 ~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  112 (176)
T cd01881          37 VVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDI----GGVDPLEDYEILNAELKLYDLE  112 (176)
T ss_pred             EEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccc----cccCHHHHHHHHHHHHHHhhhh
Confidence            34556 7889999999973    223333   3457889999999999972100    000344554445555543221 


Q ss_pred             -----CCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         236 -----FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       236 -----~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                           ..+.|+++++||+|+...............   ......++++||+++.|+.++++++...
T Consensus       113 ~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         113 TILGLLTAKPVIYVLNKIDLDDAEELEEELVRELA---LEEGAEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             hHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHh---cCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence                 246899999999998653221111000111   2234568999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.64  E-value=1e-15  Score=139.69  Aligned_cols=127  Identities=16%  Similarity=0.217  Sum_probs=82.2

Q ss_pred             eeecceeEEEEEecC-ceeeeEecCCCcc-------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHH
Q psy8318         156 VKTTGIIETHFTFKD-LHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF  227 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~-~~~~i~D~~Gq~~-------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~  227 (313)
                      .|++|..    .+.+ .++++||++|+..       ....|..+++.+++++||+|+++.+.       .+.+++...+.
T Consensus       193 ~p~ig~v----~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~-------~~~~e~l~~l~  261 (329)
T TIGR02729       193 VPNLGVV----RVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDG-------RDPIEDYEIIR  261 (329)
T ss_pred             CCEEEEE----EeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccc-------cCHHHHHHHHH
Confidence            4555643    3444 8899999999742       23445556778999999999997310       12333333333


Q ss_pred             HHHHh-CCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         228 DSICN-SKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       228 ~~~~~-~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +++.. .+.+.+.|++||+||+|+..+.. ...+.+.+.+   ..++.++++||++++|++++++++.+.+
T Consensus       262 ~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~---~~~~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       262 NELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKK---ALGKPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             HHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHH---HcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence            33322 23345789999999999865421 1222222221   1245689999999999999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.64  E-value=5.2e-16  Score=120.82  Aligned_cols=70  Identities=23%  Similarity=0.264  Sum_probs=54.0

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC-CCCCCcEEEEeecC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK-WFMDTSIILFLNKN  248 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~-~~~~~piilv~NK~  248 (313)
                      ...+.+||++|++.+...|...+.+++++|+|+|+++          ..++.++.+++..+.+.. ...++|++||+||.
T Consensus        49 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~----------~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~  118 (119)
T PF08477_consen   49 RQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSD----------PESLEYLSQLLKWLKNIRKRDKNIPIILVGNKS  118 (119)
T ss_dssp             EEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCG----------HHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-T
T ss_pred             ceEEEEEecCccceecccccchhhcCcEEEEEEcCCC----------hHHHHHHHHHHHHHHHHHccCCCCCEEEEEecc
Confidence            3449999999999888888888999999999999998          677777655533332211 23459999999999


Q ss_pred             C
Q psy8318         249 D  249 (313)
Q Consensus       249 D  249 (313)
                      |
T Consensus       119 D  119 (119)
T PF08477_consen  119 D  119 (119)
T ss_dssp             C
T ss_pred             C
Confidence            8

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK15494 era GTPase Era; Provisional

Probab=99.63  E-value=1.1e-15  Score=140.29  Aligned_cols=121  Identities=17%  Similarity=0.202  Sum_probs=75.6

Q ss_pred             ecceeEEEEEecCceeeeEecCCCcc-cccccc-------ccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHH
Q psy8318         158 TTGIIETHFTFKDLHFKMFDVGGQRS-ERKKWI-------HCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFD  228 (313)
Q Consensus       158 T~g~~~~~~~~~~~~~~i~D~~Gq~~-~r~~w~-------~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~  228 (313)
                      |.+.....++.++.++.+|||+|+.. +..+..       .++.++|++|||+|.++            ++.+.. .++.
T Consensus        87 Tr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~------------s~~~~~~~il~  154 (339)
T PRK15494         87 TRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK------------SFDDITHNILD  154 (339)
T ss_pred             ccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC------------CCCHHHHHHHH
Confidence            33434445566788999999999843 222211       24689999999999764            222222 2333


Q ss_pred             HHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         229 SICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       229 ~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      .+ ..   .+.|.++|+||+|+..+.  ..++.+.+.+.  .....++++||++|.|++++|++|.+.+.
T Consensus       155 ~l-~~---~~~p~IlViNKiDl~~~~--~~~~~~~l~~~--~~~~~i~~iSAktg~gv~eL~~~L~~~l~  216 (339)
T PRK15494        155 KL-RS---LNIVPIFLLNKIDIESKY--LNDIKAFLTEN--HPDSLLFPISALSGKNIDGLLEYITSKAK  216 (339)
T ss_pred             HH-Hh---cCCCEEEEEEhhcCcccc--HHHHHHHHHhc--CCCcEEEEEeccCccCHHHHHHHHHHhCC
Confidence            33 21   235778899999986431  12222222211  12256899999999999999999987653

>KOG3883|consensus

Probab=99.63  E-value=4.5e-15  Score=116.28  Aligned_cols=137  Identities=15%  Similarity=0.196  Sum_probs=99.9

Q ss_pred             CCCccccccccceeeeec-ceeEEEEEecCceeeeEecCCCccc-cccccccccCCcEEEEEEecCCccccccccccccc
Q psy8318         142 PNYIPTQQDVLRTRVKTT-GIIETHFTFKDLHFKMFDVGGQRSE-RKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNR  219 (313)
Q Consensus       142 ~~y~Pt~~dil~~~~~T~-g~~~~~~~~~~~~~~i~D~~Gq~~~-r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~  219 (313)
                      .+|.||.+|++.....|- |.        .-.+.++||+|-... ..+-.+||+-+|+.++|+|..+          ..+
T Consensus        38 ~e~~pTiEDiY~~svet~rga--------rE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d----------~eS   99 (198)
T KOG3883|consen   38 TELHPTIEDIYVASVETDRGA--------REQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMD----------PES   99 (198)
T ss_pred             CccccchhhheeEeeecCCCh--------hheEEEeecccccCchhhhhHhHhccCceEEEEecCCC----------HHH
Confidence            468899999987765442 21        246889999996655 6677889999999999999998          455


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         220 MIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       220 l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      |+..-.+-..+-..+.-..+||++++||+|+.+..-...+..+.+.   ..-.+..++++|.+...+.+.|..++..+-+
T Consensus       100 f~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa---~rEkvkl~eVta~dR~sL~epf~~l~~rl~~  176 (198)
T KOG3883|consen  100 FQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWA---KREKVKLWEVTAMDRPSLYEPFTYLASRLHQ  176 (198)
T ss_pred             HHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHH---hhhheeEEEEEeccchhhhhHHHHHHHhccC
Confidence            5544333333333444567999999999998654333344555444   3356788999999999999999999987754

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.63  E-value=2.6e-15  Score=122.36  Aligned_cols=118  Identities=17%  Similarity=0.151  Sum_probs=80.5

Q ss_pred             ecceeEEEEEecCceeeeEecCCCccccc------ccccccc--CCcEEEEEEecCCcccccccccccccHHHHHHHHHH
Q psy8318         158 TTGIIETHFTFKDLHFKMFDVGGQRSERK------KWIHCFE--GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDS  229 (313)
Q Consensus       158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~------~w~~~~~--~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~  229 (313)
                      |.......+.+.+..+.+|||+|+..+..      .+..++.  +++++|+|+|.++          ...   ...++..
T Consensus        30 t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~---~~~~~~~   96 (158)
T cd01879          30 TVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATN----------LER---NLYLTLQ   96 (158)
T ss_pred             ccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCc----------chh---HHHHHHH
Confidence            33444455666677899999999987664      3666675  9999999999986          222   1233333


Q ss_pred             HHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         230 ICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       230 ~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      +..    .++|+++++||+|+........... .+.   ...++.++++||.++.|+.++|+++.+.
T Consensus        97 ~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~-~~~---~~~~~~~~~iSa~~~~~~~~l~~~l~~~  155 (158)
T cd01879          97 LLE----LGLPVVVALNMIDEAEKRGIKIDLD-KLS---ELLGVPVVPTSARKGEGIDELKDAIAEL  155 (158)
T ss_pred             HHH----cCCCEEEEEehhhhcccccchhhHH-HHH---HhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence            332    2589999999999865422222221 111   1234678999999999999999998775

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.62  E-value=8e-15  Score=119.01  Aligned_cols=106  Identities=15%  Similarity=0.166  Sum_probs=73.5

Q ss_pred             EEEecCceeeeEecCCCccccc--------cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         165 HFTFKDLHFKMFDVGGQRSERK--------KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       165 ~~~~~~~~~~i~D~~Gq~~~r~--------~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      .+...+.++.+|||+|......        .-..++..++++++|+|+++          .....+.. .+..      .
T Consensus        43 ~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~~~~~~~-~~~~------~  105 (157)
T cd04164          43 SIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASR----------GLDEEDLE-ILEL------P  105 (157)
T ss_pred             EEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCC----------CCCHHHHH-HHHh------h
Confidence            4455677899999999754321        11235678999999999997          33333322 2221      3


Q ss_pred             CCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      .+.|+++++||+|+......         .. ......++++||+++.|+.+++++|.+.+
T Consensus       106 ~~~~vi~v~nK~D~~~~~~~---------~~-~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         106 ADKPIIVVLNKSDLLPDSEL---------LS-LLAGKPIIAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             cCCCEEEEEEchhcCCcccc---------cc-ccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            46899999999998754222         11 22345789999999999999999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01889 SelB_euk SelB subfamily

Probab=99.61  E-value=3.6e-15  Score=126.21  Aligned_cols=111  Identities=14%  Similarity=0.111  Sum_probs=71.2

Q ss_pred             cCceeeeEecCCCcccccccccc---ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEe
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHC---FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFL  245 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~---~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~  245 (313)
                      ++..+.+|||+|+..+   +..+   ...++++++|+|.++.          ..... ...+. +...   .+.|+++++
T Consensus        66 ~~~~~~i~DtpG~~~~---~~~~~~~~~~~d~vi~VvD~~~~----------~~~~~-~~~~~-~~~~---~~~~~iiv~  127 (192)
T cd01889          66 ENLQITLVDCPGHASL---IRTIIGGAQIIDLMLLVVDATKG----------IQTQT-AECLV-IGEI---LCKKLIVVL  127 (192)
T ss_pred             cCceEEEEECCCcHHH---HHHHHHHHhhCCEEEEEEECCCC----------ccHHH-HHHHH-HHHH---cCCCEEEEE
Confidence            3688999999999643   4444   3467899999999862          11111 11111 1111   256999999


Q ss_pred             ecCCccccccc---CCcccc----cCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         246 NKNDLFQEKIT---KSPLTV----CFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       246 NK~Dl~~~k~~---~~~l~~----~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      ||+|+......   ...+.+    .+.++ ...++.++++||++|+|+.++++++.++|.
T Consensus       128 NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         128 NKIDLIPEEERERKIEKMKKKLQKTLEKT-RFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             ECcccCCHHHHHHHHHHHHHHHHHHHHhc-CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence            99998642111   112222    22222 124567899999999999999999998875

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.59  E-value=4e-15  Score=127.15  Aligned_cols=114  Identities=13%  Similarity=0.055  Sum_probs=76.8

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      ...+.||||+|++.+.+.+......++++++|+|+++          .....++...+..+...   ...|+++++||+|
T Consensus        82 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~----------~~~~~~t~~~l~~~~~~---~~~~iiivvNK~D  148 (203)
T cd01888          82 VRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANE----------PCPQPQTSEHLAALEIM---GLKHIIIVQNKID  148 (203)
T ss_pred             ccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCC----------CCCCcchHHHHHHHHHc---CCCcEEEEEEchh
Confidence            3689999999999988888888889999999999986          11111122222222111   2257999999999


Q ss_pred             ccccc-cc--CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         250 LFQEK-IT--KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       250 l~~~k-~~--~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +..+. ..  ...+.+.+..+ ....+.++++||++|+|+.++|+++.+.+
T Consensus       149 l~~~~~~~~~~~~i~~~~~~~-~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         149 LVKEEQALENYEQIKKFVKGT-IAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             ccCHHHHHHHHHHHHHHHhcc-ccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            86521 11  12233333322 12345789999999999999999998754

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.59  E-value=2e-14  Score=136.00  Aligned_cols=114  Identities=20%  Similarity=0.241  Sum_probs=79.5

Q ss_pred             eeEEEEEecCceeeeEecCCCccccccc--------cccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318         161 IIETHFTFKDLHFKMFDVGGQRSERKKW--------IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN  232 (313)
Q Consensus       161 ~~~~~~~~~~~~~~i~D~~Gq~~~r~~w--------~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~  232 (313)
                      +....+.+++..+++|||+|++.....+        ..++++++++|+|+|.++          ..+.++.  ++..+..
T Consensus       241 ~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~----------~~s~~~~--~l~~~~~  308 (442)
T TIGR00450       241 VVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQ----------PLTKDDF--LIIDLNK  308 (442)
T ss_pred             EEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCC----------CCChhHH--HHHHHhh
Confidence            3445667788899999999997654332        357899999999999987          3333332  4444321


Q ss_pred             CCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         233 SKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       233 ~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                          .++|+++|+||+|+...  ....    +.   ...+..++.+||++ .||.++|+.+.+.+.+.
T Consensus       309 ----~~~piIlV~NK~Dl~~~--~~~~----~~---~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       309 ----SKKPFILVLNKIDLKIN--SLEF----FV---SSKVLNSSNLSAKQ-LKIKALVDLLTQKINAF  362 (442)
T ss_pred             ----CCCCEEEEEECccCCCc--chhh----hh---hhcCCceEEEEEec-CCHHHHHHHHHHHHHHH
Confidence                36799999999998643  1111    11   11234578899997 69999999999988654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.59  E-value=8.1e-15  Score=140.55  Aligned_cols=115  Identities=15%  Similarity=0.137  Sum_probs=77.1

Q ss_pred             EEEEEecCceeeeEecCCCcc--------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         163 ETHFTFKDLHFKMFDVGGQRS--------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       163 ~~~~~~~~~~~~i~D~~Gq~~--------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      ...+.+++..+.+|||+|++.        ++..+..+++.+|++|||+|.++          ..+..  ...+..++.. 
T Consensus        78 ~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~----------~~s~~--~~~i~~~l~~-  144 (472)
T PRK03003         78 SYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATV----------GATAT--DEAVARVLRR-  144 (472)
T ss_pred             EEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCC----------CCCHH--HHHHHHHHHH-
Confidence            334566778899999999863        34456778999999999999997          22211  1122222222 


Q ss_pred             CCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         235 WFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                        .++|+++|+||+|+....   ....+.+. .  ..+ ..+++||++|.|+.++|+++.+.+..
T Consensus       145 --~~~piilV~NK~Dl~~~~---~~~~~~~~-~--g~~-~~~~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        145 --SGKPVILAANKVDDERGE---ADAAALWS-L--GLG-EPHPVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             --cCCCEEEEEECccCCccc---hhhHHHHh-c--CCC-CeEEEEcCCCCCcHHHHHHHHhhccc
Confidence              468999999999986421   11111111 1  111 24689999999999999999988754

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.58  E-value=8.5e-15  Score=138.88  Aligned_cols=136  Identities=11%  Similarity=0.062  Sum_probs=84.0

Q ss_pred             ecceeEEEEEecCceeeeEecCCCcc-------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH
Q psy8318         158 TTGIIETHFTFKDLHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI  230 (313)
Q Consensus       158 T~g~~~~~~~~~~~~~~i~D~~Gq~~-------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~  230 (313)
                      |+..+...+.+++.++.+||++|...       ....+..+++.|+++|+|+|+++.+..   ......+......+...
T Consensus       193 Tl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~---rdp~~d~~~i~~EL~~y  269 (500)
T PRK12296        193 TLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPG---RDPLSDIDALEAELAAY  269 (500)
T ss_pred             cccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccc---cCchhhHHHHHHHHHHh
Confidence            33444445666788999999999632       112234457889999999999863100   00112233333333333


Q ss_pred             HhC-------CCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         231 CNS-------KWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       231 ~~~-------~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ...       ..+.+.|++||+||+|+....-....+...+.    ..++.++++||++++|+.+++.+|.+.+...
T Consensus       270 ~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~----~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~  342 (500)
T PRK12296        270 APALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELE----ARGWPVFEVSAASREGLRELSFALAELVEEA  342 (500)
T ss_pred             hhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHH----HcCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            211       03456899999999998754211112222221    2356799999999999999999999887553

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.58  E-value=1.4e-14  Score=137.55  Aligned_cols=118  Identities=16%  Similarity=0.256  Sum_probs=80.3

Q ss_pred             EEEEecCceeeeEecCCCccccccc-----------cccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318         164 THFTFKDLHFKMFDVGGQRSERKKW-----------IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN  232 (313)
Q Consensus       164 ~~~~~~~~~~~i~D~~Gq~~~r~~w-----------~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~  232 (313)
                      ..+..++..+.+|||+|++...+.+           ..+++.+|++|+|+|.++          .-+. ....++..+..
T Consensus       213 ~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~----------~~~~-~~~~~~~~~~~  281 (429)
T TIGR03594       213 IPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATE----------GITE-QDLRIAGLILE  281 (429)
T ss_pred             EEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCC----------CccH-HHHHHHHHHHH
Confidence            3455567789999999987665543           236789999999999986          2222 22344444433


Q ss_pred             CCCCCCCcEEEEeecCCcccccccC----CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         233 SKWFMDTSIILFLNKNDLFQEKITK----SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       233 ~~~~~~~piilv~NK~Dl~~~k~~~----~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                          .+.|+++++||+|+.......    ..+...++..   ..+.++++||++|.|+.++|+++.+....
T Consensus       282 ----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~vi~~SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       282 ----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFL---DFAPIVFISALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             ----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccC---CCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence                358999999999986211111    1233333322   34678999999999999999999886643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01895 EngA2 EngA2 subfamily

Probab=99.58  E-value=2.6e-14  Score=117.81  Aligned_cols=113  Identities=17%  Similarity=0.318  Sum_probs=73.4

Q ss_pred             EEEecCceeeeEecCCCccccc-----------cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC
Q psy8318         165 HFTFKDLHFKMFDVGGQRSERK-----------KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS  233 (313)
Q Consensus       165 ~~~~~~~~~~i~D~~Gq~~~r~-----------~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~  233 (313)
                      .+..++..+.+||++|......           ....++.+++++++|+|.++          ... .....++..+.. 
T Consensus        44 ~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~-~~~~~~~~~~~~-  111 (174)
T cd01895          44 PFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATE----------GIT-EQDLRIAGLILE-  111 (174)
T ss_pred             EEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCC----------Ccc-hhHHHHHHHHHh-
Confidence            3445667789999999754311           11234678999999999886          222 222333333322 


Q ss_pred             CCCCCCcEEEEeecCCccccc-cc----CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         234 KWFMDTSIILFLNKNDLFQEK-IT----KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       234 ~~~~~~piilv~NK~Dl~~~k-~~----~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                         .+.|+++++||+|+.... ..    ...+.+.++..   ....++++||+++.|+.++++++.+
T Consensus       112 ---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~  172 (174)
T cd01895         112 ---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFL---DYAPIVFISALTGQGVDKLFDAIDE  172 (174)
T ss_pred             ---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccc---cCCceEEEeccCCCCHHHHHHHHHH
Confidence               357999999999986542 11    11233333322   2357899999999999999999875

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.58  E-value=1.3e-14  Score=133.60  Aligned_cols=118  Identities=14%  Similarity=0.121  Sum_probs=75.4

Q ss_pred             ecceeEEEEEe-cCceeeeEecCCCc---------cccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHH
Q psy8318         158 TTGIIETHFTF-KDLHFKMFDVGGQR---------SERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF  227 (313)
Q Consensus       158 T~g~~~~~~~~-~~~~~~i~D~~Gq~---------~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~  227 (313)
                      |.......+.+ ++..+.+|||+|..         .+++.+ ..+.++|++|+|+|.++          +....+. ..+
T Consensus       223 T~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~----------~~~~~~~-~~~  290 (351)
T TIGR03156       223 TLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASD----------PDREEQI-EAV  290 (351)
T ss_pred             ccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCC----------CchHHHH-HHH
Confidence            33444455556 56899999999982         233322 24788999999999997          3333322 222


Q ss_pred             HHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         228 DSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       228 ~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      ..++......+.|+++|+||+|+....    .+.....     ....++++||++|.|+.+++++|.+.
T Consensus       291 ~~~L~~l~~~~~piIlV~NK~Dl~~~~----~v~~~~~-----~~~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       291 EKVLEELGAEDIPQLLVYNKIDLLDEP----RIERLEE-----GYPEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             HHHHHHhccCCCCEEEEEEeecCCChH----hHHHHHh-----CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence            233332223468999999999986421    1111100     11246899999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.57  E-value=2.3e-14  Score=136.20  Aligned_cols=112  Identities=17%  Similarity=0.238  Sum_probs=78.9

Q ss_pred             ceeEEEEEecCceeeeEecCCCcccccc--------ccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318         160 GIIETHFTFKDLHFKMFDVGGQRSERKK--------WIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC  231 (313)
Q Consensus       160 g~~~~~~~~~~~~~~i~D~~Gq~~~r~~--------w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~  231 (313)
                      .+....+.+++..+.+|||+|++.....        ...++.++|++++|+|.++          ....++ ..++..  
T Consensus       252 d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~----------~~s~~~-~~~l~~--  318 (449)
T PRK05291        252 DVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASE----------PLTEED-DEILEE--  318 (449)
T ss_pred             ccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCC----------CCChhH-HHHHHh--
Confidence            3445566677889999999998653321        2246889999999999987          333332 233332  


Q ss_pred             hCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                          ..+.|+++|+||+|+.......    .    .   ....++++||++|.|++++++++.+.+..
T Consensus       319 ----~~~~piiiV~NK~DL~~~~~~~----~----~---~~~~~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        319 ----LKDKPVIVVLNKADLTGEIDLE----E----E---NGKPVIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             ----cCCCCcEEEEEhhhccccchhh----h----c---cCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence                3468999999999986532111    1    1   23457899999999999999999988753

>cd01894 EngA1 EngA1 subfamily

Probab=99.57  E-value=9.4e-15  Score=118.69  Aligned_cols=111  Identities=17%  Similarity=0.181  Sum_probs=74.4

Q ss_pred             EEEEecCceeeeEecCCCccccc--------cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         164 THFTFKDLHFKMFDVGGQRSERK--------KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       164 ~~~~~~~~~~~i~D~~Gq~~~r~--------~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      ......+..+.+|||+|+.....        .+..++++++++++|+|..+.          .... ...+ ..++..  
T Consensus        38 ~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~-~~~~-~~~~~~--  103 (157)
T cd01894          38 GEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREG----------LTPA-DEEI-AKYLRK--  103 (157)
T ss_pred             EEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEecccc----------CCcc-HHHH-HHHHHh--
Confidence            34455678899999999987554        445678899999999998751          1111 1122 222222  


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                       .+.|+++++||+|+......    ...+..    .+. .++++||+++.|+.++|+++.+.+
T Consensus       104 -~~~piiiv~nK~D~~~~~~~----~~~~~~----~~~~~~~~~Sa~~~~gv~~l~~~l~~~~  157 (157)
T cd01894         104 -SKKPVILVVNKVDNIKEEDE----AAEFYS----LGFGEPIPISAEHGRGIGDLLDAILELL  157 (157)
T ss_pred             -cCCCEEEEEECcccCChHHH----HHHHHh----cCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence             24899999999998764222    111111    122 468999999999999999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.57  E-value=1.6e-14  Score=141.26  Aligned_cols=109  Identities=13%  Similarity=0.095  Sum_probs=77.6

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+++|||+|+..+...|..+++.++++|+|+|+++          ....+ +...+.....    .+.|+++|+||+|+
T Consensus        70 ~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~----------g~~~q-t~~~~~~~~~----~~ipiIiViNKiDl  134 (595)
T TIGR01393        70 YVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQ----------GIEAQ-TLANVYLALE----NDLEIIPVINKIDL  134 (595)
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCC----------CCCHh-HHHHHHHHHH----cCCCEEEEEECcCC
Confidence            789999999999999999999999999999999987          22222 2222222222    35799999999998


Q ss_pred             cccccc--CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         251 FQEKIT--KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       251 ~~~k~~--~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      ......  ..++.+.+. +   ....++++||++|.||.++|++|.+.+.
T Consensus       135 ~~~~~~~~~~el~~~lg-~---~~~~vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       135 PSADPERVKKEIEEVIG-L---DASEAILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             CccCHHHHHHHHHHHhC-C---CcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence            643111  112222221 1   1124789999999999999999988764

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.56  E-value=3.8e-14  Score=132.80  Aligned_cols=121  Identities=15%  Similarity=0.178  Sum_probs=77.9

Q ss_pred             EEec-CceeeeEecCCCcc-------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh-CCCC
Q psy8318         166 FTFK-DLHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN-SKWF  236 (313)
Q Consensus       166 ~~~~-~~~~~i~D~~Gq~~-------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~-~~~~  236 (313)
                      +.+. +.++.+||++|...       ....|..+++.++++|+|+|+++.+       ..+.+++...+.+++.. .+.+
T Consensus       200 v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~-------~~dp~e~~~~i~~EL~~y~~~L  272 (424)
T PRK12297        200 VETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSE-------GRDPIEDYEKINKELKLYNPRL  272 (424)
T ss_pred             EEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccc-------cCChHHHHHHHHHHHhhhchhc
Confidence            3444 68899999999742       1223444567799999999998631       01333333333333322 2334


Q ss_pred             CCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      .+.|++||+||+|+....   ..+......+    ...++++||++++|+.++++++.+.+...
T Consensus       273 ~~kP~IVV~NK~DL~~~~---e~l~~l~~~l----~~~i~~iSA~tgeGI~eL~~~L~~~l~~~  329 (424)
T PRK12297        273 LERPQIVVANKMDLPEAE---ENLEEFKEKL----GPKVFPISALTGQGLDELLYAVAELLEET  329 (424)
T ss_pred             cCCcEEEEEeCCCCcCCH---HHHHHHHHHh----CCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            578999999999984321   1111111111    25688999999999999999999877543

>KOG0090|consensus

Probab=99.56  E-value=6.6e-15  Score=121.94  Aligned_cols=125  Identities=15%  Similarity=0.242  Sum_probs=89.6

Q ss_pred             eEEEEEecCceeeeEecCCCcccccccccccc---CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC--CC
Q psy8318         162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFE---GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK--WF  236 (313)
Q Consensus       162 ~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~---~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~--~~  236 (313)
                      ++..+.+++-..++.|.+|+.+.|.+-..||.   .+.+|+||+|++.|+         ....++-+++-.++.+.  .-
T Consensus        73 n~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~---------k~vrdvaefLydil~~~~~~~  143 (238)
T KOG0090|consen   73 NEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFL---------KNVRDVAEFLYDILLDSRVKK  143 (238)
T ss_pred             ceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccc---------hhhHHHHHHHHHHHHhhcccc
Confidence            44455667777899999999999998888887   799999999999874         55666667666665543  34


Q ss_pred             CCCcEEEEeecCCcccccccC-------Ccc---------------cccCcCCC-------------CCCCeEEEEeecc
Q psy8318         237 MDTSIILFLNKNDLFQEKITK-------SPL---------------TVCFPEYT-------------DQKEIYTHFTCAT  281 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~~-------~~l---------------~~~f~~~~-------------~~~~~~~~~tSA~  281 (313)
                      .++|+++.+||+|++-++-.+       .++               ++.-.++.             .+..+.+.++|++
T Consensus       144 ~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~  223 (238)
T KOG0090|consen  144 NKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAK  223 (238)
T ss_pred             CCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccC
Confidence            679999999999997643110       011               00000000             2346778889999


Q ss_pred             cCcCHHHHHHHHHHH
Q psy8318         282 DTSNIQFVFDAVTDV  296 (313)
Q Consensus       282 ~~~~v~~~f~~i~~~  296 (313)
                      ++ ++.+.-+|+.+.
T Consensus       224 ~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  224 TG-EIDQWESWIREA  237 (238)
T ss_pred             cC-ChHHHHHHHHHh
Confidence            98 999999998864

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.55  E-value=2.7e-14  Score=136.94  Aligned_cols=118  Identities=11%  Similarity=0.117  Sum_probs=77.9

Q ss_pred             EEEEecCceeeeEecCCCccc----------ccc-ccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318         164 THFTFKDLHFKMFDVGGQRSE----------RKK-WIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN  232 (313)
Q Consensus       164 ~~~~~~~~~~~i~D~~Gq~~~----------r~~-w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~  232 (313)
                      ..+.+++..+.+|||+|++..          ... ...++++++++|+|+|+++          ..+..+ ..++..+..
T Consensus       252 ~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~----------~~s~~~-~~~~~~~~~  320 (472)
T PRK03003        252 SLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASE----------PISEQD-QRVLSMVIE  320 (472)
T ss_pred             EEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCC----------CCCHHH-HHHHHHHHH
Confidence            345567778899999997432          111 1235689999999999997          333333 344544433


Q ss_pred             CCCCCCCcEEEEeecCCcccccc---cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         233 SKWFMDTSIILFLNKNDLFQEKI---TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       233 ~~~~~~~piilv~NK~Dl~~~k~---~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                          .++|++||+||+|+..+..   ...++...+...   ....+++|||++|.||.++|+.+.+.+..
T Consensus       321 ----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~---~~~~~~~~SAk~g~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        321 ----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQV---PWAPRVNISAKTGRAVDKLVPALETALES  383 (472)
T ss_pred             ----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccC---CCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence                4689999999999864211   111222222211   23467899999999999999999887643

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.55  E-value=4e-14  Score=137.98  Aligned_cols=114  Identities=15%  Similarity=0.122  Sum_probs=77.9

Q ss_pred             EEEecCc-eeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEE
Q psy8318         165 HFTFKDL-HFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIIL  243 (313)
Q Consensus       165 ~~~~~~~-~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piil  243 (313)
                      .+.+.+. .+.+|||+||+.+..+|..++..+|++|+|+|.++           ....++...+....    ..++|+++
T Consensus       128 ~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~d-----------gv~~qT~e~i~~~~----~~~vPiIV  192 (587)
T TIGR00487       128 HVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADD-----------GVMPQTIEAISHAK----AANVPIIV  192 (587)
T ss_pred             EEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCC-----------CCCHhHHHHHHHHH----HcCCCEEE
Confidence            3444433 89999999999999999999999999999999885           22233333333221    24689999


Q ss_pred             EeecCCcccccccCCcccccCcCCC-----CCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         244 FLNKNDLFQEKITKSPLTVCFPEYT-----DQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       244 v~NK~Dl~~~k~~~~~l~~~f~~~~-----~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      ++||+|+....  ...+...+.++.     -.....++++||++|+|+.++|+++..
T Consensus       193 viNKiDl~~~~--~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       193 AINKIDKPEAN--PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             EEECcccccCC--HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence            99999986421  111111111110     012356899999999999999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR00436 era GTP-binding protein Era

Probab=99.55  E-value=2.5e-14  Score=127.63  Aligned_cols=111  Identities=14%  Similarity=0.039  Sum_probs=71.0

Q ss_pred             cCceeeeEecCCCccccc--------cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc
Q psy8318         169 KDLHFKMFDVGGQRSERK--------KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS  240 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~--------~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p  240 (313)
                      ++.++.+|||+|......        .+..+++++|+++||+|.++          ..+..  ..+++.+ ..   .+.|
T Consensus        46 ~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~----------~~~~~--~~i~~~l-~~---~~~p  109 (270)
T TIGR00436        46 GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQ----------WNGDG--EFVLTKL-QN---LKRP  109 (270)
T ss_pred             CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCC----------CCchH--HHHHHHH-Hh---cCCC
Confidence            567899999999754321        23456789999999999987          22322  2222222 22   3589


Q ss_pred             EEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         241 IILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       241 iilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      +++|+||+|+.................   ....++++||++|.|++++++++.+.+.
T Consensus       110 ~ilV~NK~Dl~~~~~~~~~~~~~~~~~---~~~~v~~iSA~~g~gi~~L~~~l~~~l~  164 (270)
T TIGR00436       110 VVLTRNKLDNKFKDKLLPLIDKYAILE---DFKDIVPISALTGDNTSFLAAFIEVHLP  164 (270)
T ss_pred             EEEEEECeeCCCHHHHHHHHHHHHhhc---CCCceEEEecCCCCCHHHHHHHHHHhCC
Confidence            999999999853211111111111101   1125899999999999999999987653

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.54  E-value=1.4e-13  Score=116.22  Aligned_cols=125  Identities=16%  Similarity=0.222  Sum_probs=86.5

Q ss_pred             ecceeEEEEE--ecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         158 TTGIIETHFT--FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       158 T~g~~~~~~~--~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      |+......+.  ..+..++++|+||+..+.+........+|++|+|+|..+.           -.....+.+..+..   
T Consensus        55 ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g-----------~~~~~~~~l~~~~~---  120 (188)
T PF00009_consen   55 TIDLSFISFEKNENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDG-----------IQPQTEEHLKILRE---  120 (188)
T ss_dssp             SSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTB-----------STHHHHHHHHHHHH---
T ss_pred             ccccccccccccccccceeecccccccceeecccceecccccceeeeecccc-----------cccccccccccccc---
Confidence            3344444555  6789999999999998888888888999999999999861           22334444444432   


Q ss_pred             CCCCcEEEEeecCCcccccccC--CcccccC-cCCC-CC-CCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITK--SPLTVCF-PEYT-DQ-KEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~--~~l~~~f-~~~~-~~-~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                       .+.|+++++||+|+...+...  .++...| ..+. .. ..+.++++||.+|.|+.++++.|.+.+
T Consensus       121 -~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  121 -LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             -TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             -cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence             467899999999987543221  2233222 2221 11 357899999999999999999988754

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.52  E-value=1.4e-13  Score=120.30  Aligned_cols=83  Identities=16%  Similarity=0.168  Sum_probs=63.5

Q ss_pred             eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      +.-|+......+.+++.++.+|||+|+..+...|..+++.++++++|+|.++          .- ......+++.+..  
T Consensus        48 rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~----------g~-~~~~~~~~~~~~~--  114 (237)
T cd04168          48 RGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVE----------GV-QAQTRILWRLLRK--  114 (237)
T ss_pred             CCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCC----------CC-CHHHHHHHHHHHH--
Confidence            3445555666778889999999999999999999999999999999999986          11 1233444444322  


Q ss_pred             CCCCCcEEEEeecCCccc
Q psy8318         235 WFMDTSIILFLNKNDLFQ  252 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~  252 (313)
                        .+.|+++|+||+|+..
T Consensus       115 --~~~P~iivvNK~D~~~  130 (237)
T cd04168         115 --LNIPTIIFVNKIDRAG  130 (237)
T ss_pred             --cCCCEEEEEECccccC
Confidence              3689999999999874

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG1673|consensus

Probab=99.52  E-value=2.6e-14  Score=112.26  Aligned_cols=130  Identities=18%  Similarity=0.299  Sum_probs=94.8

Q ss_pred             eeccee--EEEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318         157 KTTGII--ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN  232 (313)
Q Consensus       157 ~T~g~~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~  232 (313)
                      .|.|++  ..++.+++  +.+.+||+|||++++..-+....++-+|+|++|++.          +..+.....|+.+...
T Consensus        51 q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~----------r~TLnSi~~WY~QAr~  120 (205)
T KOG1673|consen   51 QTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTR----------RSTLNSIKEWYRQARG  120 (205)
T ss_pred             HHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCc----------hHHHHHHHHHHHHHhc
Confidence            344543  33444443  778999999999999999888899999999999998          7888888888888744


Q ss_pred             CCCCCCCcEEEEeecCCcccccccCC---cccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         233 SKWFMDTSIILFLNKNDLFQEKITKS---PLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       233 ~~~~~~~piilv~NK~Dl~~~k~~~~---~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      ... .-+| +++|+|.|.+-. ++.+   .+...-..|++-.+...++||+....||+.+|+-+...+.+
T Consensus       121 ~Nk-tAiP-ilvGTKyD~fi~-lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFn  187 (205)
T KOG1673|consen  121 LNK-TAIP-ILVGTKYDLFID-LPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFN  187 (205)
T ss_pred             cCC-ccce-EEeccchHhhhc-CCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhC
Confidence            221 2345 566999998763 3332   22222223333346678999999999999999999888764

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.51  E-value=1e-13  Score=137.26  Aligned_cols=112  Identities=15%  Similarity=0.122  Sum_probs=78.3

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      +..+.||||+|++.+...|..++..+|++|+|+|.++-           ....+.+.+..+.    ..++|+++++||+|
T Consensus       294 ~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dG-----------v~~QT~E~I~~~k----~~~iPiIVViNKiD  358 (742)
T CHL00189        294 NQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDG-----------VKPQTIEAINYIQ----AANVPIIVAINKID  358 (742)
T ss_pred             ceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCC-----------CChhhHHHHHHHH----hcCceEEEEEECCC
Confidence            58899999999999999999999999999999998862           1122223333221    24689999999999


Q ss_pred             ccccccc--CCccccc--CcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         250 LFQEKIT--KSPLTVC--FPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       250 l~~~k~~--~~~l~~~--f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +......  ...+..+  +++- ....+.++++||++|.|+.++|+++....
T Consensus       359 l~~~~~e~v~~eL~~~~ll~e~-~g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        359 KANANTERIKQQLAKYNLIPEK-WGGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             ccccCHHHHHHHHHHhccchHh-hCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence            8653211  0111111  1110 01236789999999999999999987753

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.51  E-value=4.7e-14  Score=121.92  Aligned_cols=125  Identities=14%  Similarity=0.067  Sum_probs=77.8

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .-|+......+++++.++.+|||+|+..+...+......++++|+|+|.++-+   .+. ......+....+... .  .
T Consensus        62 g~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~---~~~-~~~~~~~~~~~~~~~-~--~  134 (219)
T cd01883          62 GVTIDVGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGE---FEA-GFEKGGQTREHALLA-R--T  134 (219)
T ss_pred             ccCeecceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCc---ccc-ccccccchHHHHHHH-H--H
Confidence            34445555677788999999999999888777777788899999999998721   000 000111122222211 1  1


Q ss_pred             CCCCcEEEEeecCCccccc---c----cCCcccccCcCCC-CCCCeEEEEeecccCcCHH
Q psy8318         236 FMDTSIILFLNKNDLFQEK---I----TKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQ  287 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k---~----~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~  287 (313)
                      ....|+++++||+|+....   .    ....+...+..+. ....+.++++||++|+|+.
T Consensus       135 ~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         135 LGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             cCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            2236899999999987310   0    0112222333221 2245789999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.51  E-value=1.2e-13  Score=137.84  Aligned_cols=116  Identities=15%  Similarity=0.098  Sum_probs=81.0

Q ss_pred             EEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEE
Q psy8318         165 HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILF  244 (313)
Q Consensus       165 ~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv  244 (313)
                      .+.+.+..++||||+|++.|..+|...+..+|++|+|+|.++           ....++...+....    ..++|++|+
T Consensus       331 ~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAdd-----------Gv~~qT~e~i~~a~----~~~vPiIVv  395 (787)
T PRK05306        331 QVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADD-----------GVMPQTIEAINHAK----AAGVPIIVA  395 (787)
T ss_pred             EEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCC-----------CCCHhHHHHHHHHH----hcCCcEEEE
Confidence            455567889999999999999999999999999999999886           22233333333221    246899999


Q ss_pred             eecCCccccccc--CCcccc--cCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         245 LNKNDLFQEKIT--KSPLTV--CFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       245 ~NK~Dl~~~k~~--~~~l~~--~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      +||+|+......  ..++..  .+++. ....+.++++||++|.||.++|++|...
T Consensus       396 iNKiDl~~a~~e~V~~eL~~~~~~~e~-~g~~vp~vpvSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        396 INKIDKPGANPDRVKQELSEYGLVPEE-WGGDTIFVPVSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             EECccccccCHHHHHHHHHHhcccHHH-hCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence            999998653110  111111  12211 1123678999999999999999998753

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.50  E-value=8e-14  Score=114.34  Aligned_cols=105  Identities=14%  Similarity=0.165  Sum_probs=68.5

Q ss_pred             eEecCCCccccccccc----cccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         175 MFDVGGQRSERKKWIH----CFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       175 i~D~~Gq~~~r~~w~~----~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +|||+|+...+..|..    .+.+++++|+|+|.++-+          +...  .++..+     ..++|+++++||+|+
T Consensus        41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~----------s~~~--~~~~~~-----~~~~~ii~v~nK~Dl  103 (158)
T PRK15467         41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPE----------SRLP--AGLLDI-----GVSKRQIAVISKTDM  103 (158)
T ss_pred             cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcc----------cccC--HHHHhc-----cCCCCeEEEEEcccc
Confidence            6999998554444433    368999999999999732          1111  122222     135799999999998


Q ss_pred             ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ....  ...+.+.+.+.  ....+++++||++|+|+.++|+++.+.+.+.
T Consensus       104 ~~~~--~~~~~~~~~~~--~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~  149 (158)
T PRK15467        104 PDAD--VAATRKLLLET--GFEEPIFELNSHDPQSVQQLVDYLASLTKQE  149 (158)
T ss_pred             Cccc--HHHHHHHHHHc--CCCCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence            5421  12222222211  1124789999999999999999998877543

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.50  E-value=1.2e-13  Score=135.44  Aligned_cols=110  Identities=16%  Similarity=0.119  Sum_probs=78.5

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      ++.+++|||+|+..+...|..+++.++++|+|+|.++-          ... .....+.....    .+.|+++|+||+|
T Consensus        73 ~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~g----------v~~-qt~~~~~~~~~----~~lpiIvViNKiD  137 (600)
T PRK05433         73 TYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG----------VEA-QTLANVYLALE----NDLEIIPVLNKID  137 (600)
T ss_pred             cEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCC----------CCH-HHHHHHHHHHH----CCCCEEEEEECCC
Confidence            57899999999999999999999999999999999872          121 12222322222    3579999999999


Q ss_pred             ccccccc--CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         250 LFQEKIT--KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       250 l~~~k~~--~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      +..+...  ..++.+.+. +   ....++++||++|.|+.+++++|.+.+.
T Consensus       138 l~~a~~~~v~~ei~~~lg-~---~~~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        138 LPAADPERVKQEIEDVIG-I---DASDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             CCcccHHHHHHHHHHHhC-C---CcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            8653211  112222211 1   1124789999999999999999988764

>PRK11058 GTPase HflX; Provisional

Probab=99.50  E-value=2.4e-13  Score=128.06  Aligned_cols=116  Identities=14%  Similarity=0.151  Sum_probs=73.0

Q ss_pred             EEEecC-ceeeeEecCCCccc--ccccc------ccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         165 HFTFKD-LHFKMFDVGGQRSE--RKKWI------HCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       165 ~~~~~~-~~~~i~D~~Gq~~~--r~~w~------~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .+...+ ..+.+|||+|..+.  ..+|.      ..+.+++++|+|+|.++          +.. .+....+..++..-.
T Consensus       238 ~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~----------~~~-~e~l~~v~~iL~el~  306 (426)
T PRK11058        238 RIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAAD----------VRV-QENIEAVNTVLEEID  306 (426)
T ss_pred             EEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCC----------ccH-HHHHHHHHHHHHHhc
Confidence            444444 37889999998432  22333      34688999999999997          333 233322333333222


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      ..+.|+++|+||+|+......  .+...  .    .+. .++++||++|.|+.++++++.+.+..
T Consensus       307 ~~~~pvIiV~NKiDL~~~~~~--~~~~~--~----~~~~~~v~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        307 AHEIPTLLVMNKIDMLDDFEP--RIDRD--E----ENKPIRVWLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             cCCCCEEEEEEcccCCCchhH--HHHHH--h----cCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence            246899999999998642110  11000  0    111 24779999999999999999988753

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.50  E-value=1.1e-13  Score=135.22  Aligned_cols=127  Identities=17%  Similarity=0.160  Sum_probs=85.3

Q ss_pred             ecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318         158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM  237 (313)
Q Consensus       158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~  237 (313)
                      |+.+....++.++..+.+||++|++.+.+.+..++.++|++++|+|.++-           ...++.+.+.. +..   .
T Consensus        37 Tid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G-----------~~~qT~ehl~i-l~~---l  101 (581)
T TIGR00475        37 TIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEG-----------VMTQTGEHLAV-LDL---L  101 (581)
T ss_pred             eEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC-----------CcHHHHHHHHH-HHH---c
Confidence            33333445666778999999999999998888899999999999999861           11222222221 221   2


Q ss_pred             CCc-EEEEeecCCccccc-c--cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         238 DTS-IILFLNKNDLFQEK-I--TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       238 ~~p-iilv~NK~Dl~~~k-~--~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      ++| +++++||+|+..+. +  ....+.+.+..+....++.++++||++|+|+.++++++.+.+..
T Consensus       102 gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       102 GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES  167 (581)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence            466 99999999986532 1  11223332222211125678999999999999999998776543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.49  E-value=1.1e-13  Score=131.69  Aligned_cols=111  Identities=19%  Similarity=0.140  Sum_probs=73.9

Q ss_pred             eEEEEEecCceeeeEecCCCcc--------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC
Q psy8318         162 IETHFTFKDLHFKMFDVGGQRS--------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS  233 (313)
Q Consensus       162 ~~~~~~~~~~~~~i~D~~Gq~~--------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~  233 (313)
                      ....+.+.+..+.+|||+|+..        .+..+..++.++|++|||+|.++          .....  ...+..++..
T Consensus        40 ~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~----------~~~~~--~~~~~~~l~~  107 (435)
T PRK00093         40 IYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRA----------GLTPA--DEEIAKILRK  107 (435)
T ss_pred             eEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCC----------CCCHH--HHHHHHHHHH
Confidence            3345566778999999999976        34445667899999999999986          11111  1112222222


Q ss_pred             CCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHH
Q psy8318         234 KWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       234 ~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                         .+.|+++++||+|....   .....+. ..    .++ .++++||++|.|+.++|+++.+
T Consensus       108 ---~~~piilv~NK~D~~~~---~~~~~~~-~~----lg~~~~~~iSa~~g~gv~~l~~~I~~  159 (435)
T PRK00093        108 ---SNKPVILVVNKVDGPDE---EADAYEF-YS----LGLGEPYPISAEHGRGIGDLLDAILE  159 (435)
T ss_pred             ---cCCcEEEEEECccCccc---hhhHHHH-Hh----cCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence               26899999999996431   1111111 11    122 3689999999999999999987

>cd04163 Era Era subfamily

Probab=99.48  E-value=1.6e-13  Score=112.08  Aligned_cols=111  Identities=21%  Similarity=0.216  Sum_probs=70.5

Q ss_pred             cCceeeeEecCCCccccc--------cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc
Q psy8318         169 KDLHFKMFDVGGQRSERK--------KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS  240 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~--------~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p  240 (313)
                      ++..+.+||++|......        .+..++..++++++|+|.++.            ..+....+...+..   .+.|
T Consensus        49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~------------~~~~~~~~~~~~~~---~~~~  113 (168)
T cd04163          49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEP------------IGEGDEFILELLKK---SKTP  113 (168)
T ss_pred             CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCc------------cCchHHHHHHHHHH---hCCC
Confidence            457899999999754332        234457889999999999972            11112222222221   2579


Q ss_pred             EEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         241 IILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       241 iilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      +++++||+|+.............+..  ......++.+||+++.++.+++++|.+.
T Consensus       114 ~iiv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         114 VILVLNKIDLVKDKEDLLPLLEKLKE--LGPFAEIFPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             EEEEEEchhccccHHHHHHHHHHHHh--ccCCCceEEEEeccCCChHHHHHHHHhh
Confidence            99999999986321111111111111  1123467899999999999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd00880 Era_like Era (E

Probab=99.48  E-value=2.1e-13  Score=110.15  Aligned_cols=111  Identities=17%  Similarity=0.082  Sum_probs=73.9

Q ss_pred             CceeeeEecCCCccccc-------cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318         170 DLHFKMFDVGGQRSERK-------KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII  242 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~-------~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii  242 (313)
                      ...+.+||++|+.....       .+..++..++++++|+|.++.          ....... ++....    ..+.|++
T Consensus        44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~----------~~~~~~~-~~~~~~----~~~~~~i  108 (163)
T cd00880          44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLR----------ADEEEEK-LLELLR----ERGKPVL  108 (163)
T ss_pred             CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCC----------CCHHHHH-HHHHHH----hcCCeEE
Confidence            67899999999876543       344578999999999999983          2222222 222221    2468999


Q ss_pred             EEeecCCcccccccCCccc-ccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         243 LFLNKNDLFQEKITKSPLT-VCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       243 lv~NK~Dl~~~k~~~~~l~-~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      +++||+|+....-...... ...... ......++++||+++.|+.++++++.+.
T Consensus       109 vv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         109 LVLNKIDLLPEEEEEELLELRLLILL-LLLGLPVIAVSALTGEGIDELREALIEA  162 (163)
T ss_pred             EEEEccccCChhhHHHHHHHHHhhcc-cccCCceEEEeeeccCCHHHHHHHHHhh
Confidence            9999999765321111100 000011 2245678999999999999999998864

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.47  E-value=1.7e-13  Score=116.02  Aligned_cols=110  Identities=8%  Similarity=0.094  Sum_probs=67.2

Q ss_pred             CceeeeEecCCCc----------cccccccccccC---CcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         170 DLHFKMFDVGGQR----------SERKKWIHCFEG---VTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       170 ~~~~~i~D~~Gq~----------~~r~~w~~~~~~---~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      +..+.+|||+|..          .+......++..   ++++++|+|.++          .....+  ..+...+..   
T Consensus        69 ~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~----------~~~~~~--~~i~~~l~~---  133 (196)
T PRK00454         69 NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRH----------PLKELD--LQMIEWLKE---  133 (196)
T ss_pred             CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCC----------CCCHHH--HHHHHHHHH---
Confidence            3689999999952          223333445554   467888888775          111111  111222221   


Q ss_pred             CCCcEEEEeecCCcccccccC---CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKITK---SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~~---~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      .+.|+++++||+|+.......   ..+...+..    ....++++||+++.|+.++++++.+.+.
T Consensus       134 ~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~----~~~~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        134 YGIPVLIVLTKADKLKKGERKKQLKKVRKALKF----GDDEVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh----cCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            357999999999986532111   122233221    1456789999999999999999987653

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.45  E-value=4.9e-13  Score=130.71  Aligned_cols=128  Identities=15%  Similarity=0.142  Sum_probs=92.2

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      ..|+......+.+++.++++|||+|+..+...+..+++.+|++++|+|.++           .....+..++..+..   
T Consensus        49 GiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~-----------G~~~qT~~~l~~a~~---  114 (594)
T TIGR01394        49 GITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASE-----------GPMPQTRFVLKKALE---  114 (594)
T ss_pred             CccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCC-----------CCcHHHHHHHHHHHH---
Confidence            345555556778899999999999999999999999999999999999985           233445556665544   


Q ss_pred             CCCCcEEEEeecCCccccccc--CCcccccCcCCC---CCCCeEEEEeecccCc----------CHHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKIT--KSPLTVCFPEYT---DQKEIYTHFTCATDTS----------NIQFVFDAVTDVII  298 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~--~~~l~~~f~~~~---~~~~~~~~~tSA~~~~----------~v~~~f~~i~~~i~  298 (313)
                       .++|+++|+||+|+..+...  ..++.+.|..+.   ....+.++++||++|.          |+..+|+.+.+.+-
T Consensus       115 -~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       115 -LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             -CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence             35799999999998654221  123333332221   1124578999999995          78899988887653

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.45  E-value=2.6e-13  Score=116.42  Aligned_cols=117  Identities=14%  Similarity=0.062  Sum_probs=72.7

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      -|+......+..++.++.+|||+|++.+...+...+..++++|+|+|.++-           ........+. ++..  .
T Consensus        63 ~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~-----------~~~~~~~~~~-~~~~--~  128 (208)
T cd04166          63 ITIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKG-----------VLEQTRRHSY-ILSL--L  128 (208)
T ss_pred             cCeecceeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCC-----------ccHhHHHHHH-HHHH--c
Confidence            344444456667888999999999988777777788999999999998861           1111222221 2221  1


Q ss_pred             CCCcEEEEeecCCccccccc-----CCcccccCcCCCCCCCeEEEEeecccCcCHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKIT-----KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQF  288 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~-----~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~  288 (313)
                      ...++++|+||+|+....-.     ..++...+..+ ......++++||++|.|+.+
T Consensus       129 ~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         129 GIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKL-GIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             CCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHc-CCCCceEEEEeCCCCCCCcc
Confidence            22467889999998642100     11222222222 11235689999999999864

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.45  E-value=2.5e-13  Score=128.76  Aligned_cols=124  Identities=15%  Similarity=0.095  Sum_probs=76.0

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      ..|+......+..++..+.+||++||+.+.+.....+..++++|+|+|.++-+.   +.  .....+...    ++..  
T Consensus        70 g~Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~---~~--~~~t~~~~~----~~~~--  138 (426)
T TIGR00483        70 GVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEF---EV--QPQTREHAF----LART--  138 (426)
T ss_pred             CceEEEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCc---cc--CCchHHHHH----HHHH--
Confidence            344445556677788999999999998776555556788999999999997210   00  011111111    1111  


Q ss_pred             CCCCcEEEEeecCCcccc-c--c--cCCcccccCcCCC-CCCCeEEEEeecccCcCHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQE-K--I--TKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFVF  290 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~-k--~--~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~f  290 (313)
                      ....|++|++||+|+.+. +  .  ...++.+.+..+. ....+.++++||++|.|+.+.+
T Consensus       139 ~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       139 LGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             cCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence            123589999999998631 1  0  1122333332221 1234789999999999998644

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.44  E-value=4.4e-13  Score=127.33  Aligned_cols=113  Identities=19%  Similarity=0.158  Sum_probs=76.4

Q ss_pred             EEEEEecCceeeeEecCCC--------ccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         163 ETHFTFKDLHFKMFDVGGQ--------RSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       163 ~~~~~~~~~~~~i~D~~Gq--------~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      ...+.+++..+.+|||||.        +.++..+..+++.+++++||+|.++          .-. ..... +..++.. 
T Consensus        39 ~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~----------~~~-~~d~~-i~~~l~~-  105 (429)
T TIGR03594        39 YGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGRE----------GLT-PEDEE-IAKWLRK-  105 (429)
T ss_pred             EEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCC----------CCC-HHHHH-HHHHHHH-
Confidence            3455667888999999996        3344556777899999999999885          111 11111 2222222 


Q ss_pred             CCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         235 WFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                        .+.|+++|+||+|+........+    +.    ..++ .++++||++|.|+.++++++.+.+-
T Consensus       106 --~~~piilVvNK~D~~~~~~~~~~----~~----~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~  160 (429)
T TIGR03594       106 --SGKPVILVANKIDGKKEDAVAAE----FY----SLGFGEPIPISAEHGRGIGDLLDAILELLP  160 (429)
T ss_pred             --hCCCEEEEEECccCCcccccHHH----HH----hcCCCCeEEEeCCcCCChHHHHHHHHHhcC
Confidence              35899999999998653211111    11    1233 5789999999999999999988764

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.44  E-value=7e-13  Score=126.19  Aligned_cols=116  Identities=16%  Similarity=0.243  Sum_probs=77.4

Q ss_pred             EEEecCceeeeEecCCCccccccc-----------cccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC
Q psy8318         165 HFTFKDLHFKMFDVGGQRSERKKW-----------IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS  233 (313)
Q Consensus       165 ~~~~~~~~~~i~D~~Gq~~~r~~w-----------~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~  233 (313)
                      .+..++..+.+|||+|.....+.+           ..+++.+|++|+|+|.++          ... .....++..+.. 
T Consensus       215 ~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~----------~~~-~~~~~i~~~~~~-  282 (435)
T PRK00093        215 PFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATE----------GIT-EQDLRIAGLALE-  282 (435)
T ss_pred             EEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCC----------CCC-HHHHHHHHHHHH-
Confidence            345577889999999976543332           235778999999999986          222 222334444332 


Q ss_pred             CCCCCCcEEEEeecCCcccccc---cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         234 KWFMDTSIILFLNKNDLFQEKI---TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       234 ~~~~~~piilv~NK~Dl~~~k~---~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                         .+.|+++++||+|+..+..   ....+...++..   ..+.++++||++|.|+.++|+++.+...
T Consensus       283 ---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~---~~~~i~~~SA~~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        283 ---AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFL---DYAPIVFISALTGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             ---cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccc---cCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence               3579999999999864221   111223333322   3467899999999999999999887654

>KOG4423|consensus

Probab=99.44  E-value=1.5e-13  Score=111.23  Aligned_cols=118  Identities=13%  Similarity=0.108  Sum_probs=90.2

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC---CCCCCCcEEEEeec
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS---KWFMDTSIILFLNK  247 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~---~~~~~~piilv~NK  247 (313)
                      +++++||++||+++..+..-||+++++...|+|++.          ...++.+..|.+.+...   +.....|++++.||
T Consensus        75 vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~----------s~tfe~~skwkqdldsk~qLpng~Pv~~vllank  144 (229)
T KOG4423|consen   75 VRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTR----------SLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANK  144 (229)
T ss_pred             HHHHHhcchhhhhhcceEEEEecCCcceEEEEEccc----------cccccHHHHHHHhccCcccCCCCCcchheeccch
Confidence            678999999999999999999999999999999998          66777777777776543   33456789999999


Q ss_pred             CCcccccccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         248 NDLFQEKITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       248 ~Dl~~~k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ||....-...  -...|..|.+++++ ..++|||+...|+.|+-+.+.+.++-+
T Consensus       145 Cd~e~~a~~~--~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvn  196 (229)
T KOG4423|consen  145 CDQEKSAKNE--ATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVN  196 (229)
T ss_pred             hccChHhhhh--hHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhh
Confidence            9976432222  11223333233443 578999999999999999999988754

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.44  E-value=3.9e-13  Score=126.54  Aligned_cols=114  Identities=12%  Similarity=0.087  Sum_probs=76.7

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      +..+++||++||+.+.+.|......+|++++|+|.++-.       ......+.+..+    ..  ....|+++++||+|
T Consensus        79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-------~~~qt~e~l~~l----~~--~gi~~iIVvvNK~D  145 (406)
T TIGR03680        79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-------PQPQTKEHLMAL----EI--IGIKNIVIVQNKID  145 (406)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCc-------cccchHHHHHHH----HH--cCCCeEEEEEEccc
Confidence            468999999999999988888888999999999998610       011222222222    11  12357999999999


Q ss_pred             ccccccc---CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         250 LFQEKIT---KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       250 l~~~k~~---~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +....-.   ..++.+.+..+ ....+.++++||++|+|+.+++++|...+
T Consensus       146 l~~~~~~~~~~~~i~~~l~~~-~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       146 LVSKEKALENYEEIKEFVKGT-VAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             cCCHHHHHHHHHHHHhhhhhc-ccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            8642111   12222222221 11356789999999999999999998754

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.43  E-value=3.7e-13  Score=109.11  Aligned_cols=113  Identities=19%  Similarity=0.165  Sum_probs=77.9

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccc------cccccccc--cCCcEEEEEEecCCcccccccccccccHHHHHHHHH
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSE------RKKWIHCF--EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFD  228 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~------r~~w~~~~--~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~  228 (313)
                      .|+-.....+.+++..+.++|++|..+.      .+.+..++  +..|++|.|+|.+.             ++..+.+..
T Consensus        33 ~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~-------------l~r~l~l~~   99 (156)
T PF02421_consen   33 TTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN-------------LERNLYLTL   99 (156)
T ss_dssp             SSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG-------------HHHHHHHHH
T ss_pred             CCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC-------------HHHHHHHHH
Confidence            3444556677788899999999995332      34445554  68999999999874             566677777


Q ss_pred             HHHhCCCCCCCcEEEEeecCCccccccc---CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHH
Q psy8318         229 SICNSKWFMDTSIILFLNKNDLFQEKIT---KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAV  293 (313)
Q Consensus       229 ~~~~~~~~~~~piilv~NK~Dl~~~k~~---~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i  293 (313)
                      ++..    .+.|+++++||+|...++-.   ...+++.       .+++++++||++++|++++++.|
T Consensus       100 ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~-------Lg~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  100 QLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSER-------LGVPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             HHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHH-------HTS-EEEEBTTTTBTHHHHHHHH
T ss_pred             HHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHH-------hCCCEEEEEeCCCcCHHHHHhhC
Confidence            7765    35899999999998764321   1233332       46789999999999999998764

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK10218 GTP-binding protein; Provisional

Probab=99.43  E-value=1e-12  Score=128.34  Aligned_cols=125  Identities=14%  Similarity=0.147  Sum_probs=86.2

Q ss_pred             ecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318         158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM  237 (313)
Q Consensus       158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~  237 (313)
                      |+......+.+++.++++|||+|+..+...|..+++.++++|+|+|.++           .........+.....    .
T Consensus        55 Ti~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~-----------G~~~qt~~~l~~a~~----~  119 (607)
T PRK10218         55 TILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFD-----------GPMPQTRFVTKKAFA----Y  119 (607)
T ss_pred             EEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEeccc-----------CccHHHHHHHHHHHH----c
Confidence            3334445667789999999999999999999999999999999999986           122233344444333    3


Q ss_pred             CCcEEEEeecCCcccccccC--CcccccCcCCC---CCCCeEEEEeecccCc----------CHHHHHHHHHHHH
Q psy8318         238 DTSIILFLNKNDLFQEKITK--SPLTVCFPEYT---DQKEIYTHFTCATDTS----------NIQFVFDAVTDVI  297 (313)
Q Consensus       238 ~~piilv~NK~Dl~~~k~~~--~~l~~~f~~~~---~~~~~~~~~tSA~~~~----------~v~~~f~~i~~~i  297 (313)
                      +.|+++++||+|+..+....  .++.+.|....   ....++++++||++|.          ++..+++.|.+.+
T Consensus       120 gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        120 GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV  194 (607)
T ss_pred             CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence            67899999999987542211  23333332211   1134678999999998          4777777666654

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.43  E-value=1.4e-12  Score=113.66  Aligned_cols=126  Identities=10%  Similarity=0.109  Sum_probs=75.3

Q ss_pred             eeEEEEEecCceeeeEecCCCcccc-------ccccccccCCcEEEEEEecCCccccc------c-------c-------
Q psy8318         161 IIETHFTFKDLHFKMFDVGGQRSER-------KKWIHCFEGVTAIIFCVALSGYDSVL------A-------E-------  213 (313)
Q Consensus       161 ~~~~~~~~~~~~~~i~D~~Gq~~~r-------~~w~~~~~~~~~iifv~dls~~d~~~------~-------e-------  213 (313)
                      .....+.+++..+++||++|+....       +.+..++++++++++|+|+++-++..      .       +       
T Consensus        37 ~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~  116 (233)
T cd01896          37 CVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNIT  116 (233)
T ss_pred             ceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEE
Confidence            3344556688999999999985432       23456789999999999998632100      0       0       


Q ss_pred             --ccc-------------cccHHHHHHHHHHH---------------------HhCCCCCCCcEEEEeecCCcccccccC
Q psy8318         214 --DEE-------------MNRMIESMKLFDSI---------------------CNSKWFMDTSIILFLNKNDLFQEKITK  257 (313)
Q Consensus       214 --~~~-------------~~~l~e~~~~~~~~---------------------~~~~~~~~~piilv~NK~Dl~~~k~~~  257 (313)
                        ...             .-..+....++.+.                     +.. ....+|+++++||+|+....   
T Consensus       117 ~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~-~~~y~p~iiV~NK~Dl~~~~---  192 (233)
T cd01896         117 IKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEG-NRVYIPCLYVYNKIDLISIE---  192 (233)
T ss_pred             EEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhC-CceEeeEEEEEECccCCCHH---
Confidence              000             00112222222221                     110 11346999999999975421   


Q ss_pred             CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         258 SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       258 ~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                       +.. .+.     ....++++||+++.|++++|+.+.+.+
T Consensus       193 -~~~-~~~-----~~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         193 -ELD-LLA-----RQPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             -HHH-HHh-----cCCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence             111 121     112478899999999999999888754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.43  E-value=3.2e-13  Score=111.91  Aligned_cols=76  Identities=22%  Similarity=0.326  Sum_probs=55.7

Q ss_pred             cCceeeeEecCCCccccccccc---cccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC--CCCCcEEE
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIH---CFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW--FMDTSIIL  243 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~---~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~--~~~~piil  243 (313)
                      .+..+.+.|++|+.+.|.....   +..++.+||||+|.+.+         ...+.++-+++-.++....  ...+|++|
T Consensus        47 ~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~---------~~~~~~~Ae~Ly~iL~~~~~~~~~~piLI  117 (181)
T PF09439_consen   47 KGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTD---------QKELRDVAEYLYDILSDTEVQKNKPPILI  117 (181)
T ss_dssp             CGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTH---------HHHHHHHHHHHHHHHHHHHCCTT--EEEE
T ss_pred             CCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccc---------hhhHHHHHHHHHHHHHhhhhccCCCCEEE
Confidence            3467899999999998875544   47889999999999853         4567777777777766533  35689999


Q ss_pred             EeecCCcccc
Q psy8318         244 FLNKNDLFQE  253 (313)
Q Consensus       244 v~NK~Dl~~~  253 (313)
                      ++||+|++.+
T Consensus       118 acNK~Dl~~A  127 (181)
T PF09439_consen  118 ACNKQDLFTA  127 (181)
T ss_dssp             EEE-TTSTT-
T ss_pred             EEeCcccccc
Confidence            9999999875

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.43  E-value=5e-13  Score=115.42  Aligned_cols=131  Identities=15%  Similarity=0.274  Sum_probs=81.0

Q ss_pred             eeecceeEEEEEe-cCceeeeEecCCCccccc-----cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHH
Q psy8318         156 VKTTGIIETHFTF-KDLHFKMFDVGGQRSERK-----KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDS  229 (313)
Q Consensus       156 ~~T~g~~~~~~~~-~~~~~~i~D~~Gq~~~r~-----~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~  229 (313)
                      .||+.+....+.. +...+++||+|||..+-.     .....|+++.++|||+|+.+           ....+++..|..
T Consensus        32 ~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs-----------~~~~~~l~~~~~  100 (232)
T PF04670_consen   32 EPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQS-----------DDYDEDLAYLSD  100 (232)
T ss_dssp             ----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT------------STCHHHHHHHHH
T ss_pred             CCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEccc-----------ccHHHHHHHHHH
Confidence            4677777666664 568999999999975543     34667999999999999994           234555555555


Q ss_pred             HHhC--CCCCCCcEEEEeecCCcccccccC-------CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         230 ICNS--KWFMDTSIILFLNKNDLFQEKITK-------SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       230 ~~~~--~~~~~~piilv~NK~Dl~~~k~~~-------~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      .+..  ....++.+-++.+|+|+..+.-..       ..+.+...+. ....+.+|.||.-| ..+.++|..|...+..
T Consensus       101 ~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~-~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP  177 (232)
T PF04670_consen  101 CIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDL-GIEDITFFLTSIWD-ESLYEAWSKIVQKLIP  177 (232)
T ss_dssp             HHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHT-T-TSEEEEEE-TTS-THHHHHHHHHHHTTST
T ss_pred             HHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhc-cccceEEEeccCcC-cHHHHHHHHHHHHHcc
Confidence            4432  223578999999999986432111       1222222222 11258899999998 5888888888877663

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.43  E-value=7.3e-13  Score=125.63  Aligned_cols=124  Identities=19%  Similarity=0.150  Sum_probs=75.8

Q ss_pred             eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      +.-|+......++.++..+.+|||+|++.+.+........+|++|+|+|.++-.     .. .....+...+    +.. 
T Consensus        68 rG~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~-----~~-~~~~~~~~~~----~~~-  136 (425)
T PRK12317         68 RGVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAG-----GV-MPQTREHVFL----ART-  136 (425)
T ss_pred             cCccceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCC-----CC-CcchHHHHHH----HHH-
Confidence            345566666677788899999999999776544444567899999999998510     00 1111122221    111 


Q ss_pred             CCCCCcEEEEeecCCccccc---c--cCCcccccCcCCC-CCCCeEEEEeecccCcCHHHHH
Q psy8318         235 WFMDTSIILFLNKNDLFQEK---I--TKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFVF  290 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~~k---~--~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~f  290 (313)
                       ....|+++++||+|+....   .  ...++.+.+..+. ....+.++++||++|+|+.+.+
T Consensus       137 -~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        137 -LGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             -cCCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence             1224799999999986411   0  1123333332221 1124679999999999998744

>cd04169 RF3 RF3 subfamily

Probab=99.42  E-value=1.5e-12  Score=115.58  Aligned_cols=84  Identities=18%  Similarity=0.222  Sum_probs=61.8

Q ss_pred             eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      +..|+......+++++.++++|||+|+..+...+..+++.++++|+|+|.++-          - ......+++.. .. 
T Consensus        55 rg~si~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g----------~-~~~~~~i~~~~-~~-  121 (267)
T cd04169          55 RGISVTSSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG----------V-EPQTRKLFEVC-RL-  121 (267)
T ss_pred             CCCCeEEEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC----------c-cHHHHHHHHHH-Hh-
Confidence            44555666678888999999999999998887677788999999999999861          1 11222333322 22 


Q ss_pred             CCCCCcEEEEeecCCcccc
Q psy8318         235 WFMDTSIILFLNKNDLFQE  253 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~~  253 (313)
                        .++|+++++||+|+..+
T Consensus       122 --~~~P~iivvNK~D~~~a  138 (267)
T cd04169         122 --RGIPIITFINKLDREGR  138 (267)
T ss_pred             --cCCCEEEEEECCccCCC
Confidence              36899999999998653

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.42  E-value=1.2e-12  Score=131.29  Aligned_cols=118  Identities=14%  Similarity=0.107  Sum_probs=77.3

Q ss_pred             EEEEecCceeeeEecCCCcc-ccccc----------cccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318         164 THFTFKDLHFKMFDVGGQRS-ERKKW----------IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN  232 (313)
Q Consensus       164 ~~~~~~~~~~~i~D~~Gq~~-~r~~w----------~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~  232 (313)
                      ..+.+++..+.+|||+|... .+..|          ..+++.++++++|+|.++          ..+..+ ..++..+..
T Consensus       491 ~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~----------~~s~~~-~~i~~~~~~  559 (712)
T PRK09518        491 EIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQ----------PISEQD-LKVMSMAVD  559 (712)
T ss_pred             eEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCC----------CCCHHH-HHHHHHHHH
Confidence            34566778899999999742 22222          234688999999999997          333332 344554433


Q ss_pred             CCCCCCCcEEEEeecCCccccccc---CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         233 SKWFMDTSIILFLNKNDLFQEKIT---KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       233 ~~~~~~~piilv~NK~Dl~~~k~~---~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                          .++|++||+||+|+..+...   ...+...++..   .....+++||++|.|+.++|+.+.+....
T Consensus       560 ----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~---~~~~ii~iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        560 ----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRV---TWARRVNLSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             ----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCC---CCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence                36899999999998643110   11122222211   22356889999999999999999887654

>PRK00089 era GTPase Era; Reviewed

Probab=99.42  E-value=9.6e-13  Score=118.71  Aligned_cols=113  Identities=19%  Similarity=0.225  Sum_probs=72.1

Q ss_pred             cCceeeeEecCCCccccc--------cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc
Q psy8318         169 KDLHFKMFDVGGQRSERK--------KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS  240 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~--------~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p  240 (313)
                      ++.++.+|||+|....+.        .+...+.++|+++||+|.++            .+.+....+...+..   .+.|
T Consensus        51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~------------~~~~~~~~i~~~l~~---~~~p  115 (292)
T PRK00089         51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADE------------KIGPGDEFILEKLKK---VKTP  115 (292)
T ss_pred             CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCC------------CCChhHHHHHHHHhh---cCCC
Confidence            457899999999754322        23345789999999999986            111122222222222   3589


Q ss_pred             EEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         241 IILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       241 iilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      +++|+||+|+...+....+..+.+.+.  .....++++||+++.|+.++++++.+.+.
T Consensus       116 vilVlNKiDl~~~~~~l~~~~~~l~~~--~~~~~i~~iSA~~~~gv~~L~~~L~~~l~  171 (292)
T PRK00089        116 VILVLNKIDLVKDKEELLPLLEELSEL--MDFAEIVPISALKGDNVDELLDVIAKYLP  171 (292)
T ss_pred             EEEEEECCcCCCCHHHHHHHHHHHHhh--CCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence            999999999873211111111111111  12356889999999999999999988763

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.41  E-value=7.8e-13  Score=124.51  Aligned_cols=114  Identities=12%  Similarity=0.088  Sum_probs=71.1

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      ..+++|||+|++.+.+....-...++++++|+|+++          .....++...+..+ ..  ....|+++++||+|+
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~----------~~~~~~t~~~l~~l-~~--~~i~~iiVVlNK~Dl  151 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANE----------PCPQPQTKEHLMAL-DI--IGIKNIVIVQNKIDL  151 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC----------CCCChhHHHHHHHH-HH--cCCCcEEEEEEeecc
Confidence            579999999998776543333445799999999985          11011222222222 11  122478999999998


Q ss_pred             cccccc---CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         251 FQEKIT---KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       251 ~~~k~~---~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      ..+...   ...+...+..+ ......++++||++|.|+.+++++|...+.
T Consensus       152 ~~~~~~~~~~~~i~~~l~~~-~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        152 VSKERALENYEQIKEFVKGT-VAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             ccchhHHHHHHHHHHHhccc-cCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            653111   11222222221 113467899999999999999999987653

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.41  E-value=4.9e-13  Score=111.85  Aligned_cols=98  Identities=11%  Similarity=0.304  Sum_probs=59.0

Q ss_pred             eeeeEecCCCcc------cccccc----cccc---CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCC
Q psy8318         172 HFKMFDVGGQRS------ERKKWI----HCFE---GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMD  238 (313)
Q Consensus       172 ~~~i~D~~Gq~~------~r~~w~----~~~~---~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~  238 (313)
                      .+.+||++|...      .+..|.    .|++   .++++++|+|.+.          .-. .....++. .+..   .+
T Consensus        65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~----------~~~-~~~~~~~~-~~~~---~~  129 (179)
T TIGR03598        65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRH----------PLK-ELDLEMLE-WLRE---RG  129 (179)
T ss_pred             cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCC----------CCC-HHHHHHHH-HHHH---cC
Confidence            699999999532      123332    3444   4679999999875          111 11122232 2222   36


Q ss_pred             CcEEEEeecCCccccc-c--cCCcccccCcCCCCCCCeEEEEeecccCcCH
Q psy8318         239 TSIILFLNKNDLFQEK-I--TKSPLTVCFPEYTDQKEIYTHFTCATDTSNI  286 (313)
Q Consensus       239 ~piilv~NK~Dl~~~k-~--~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v  286 (313)
                      .|+++++||+|+..+. .  ....+.+.+...  ...+.++++||++|+|+
T Consensus       130 ~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~--~~~~~v~~~Sa~~g~gi  178 (179)
T TIGR03598       130 IPVLIVLTKADKLKKSELNKQLKKIKKALKKD--ADDPSVQLFSSLKKTGI  178 (179)
T ss_pred             CCEEEEEECcccCCHHHHHHHHHHHHHHHhhc--cCCCceEEEECCCCCCC
Confidence            8999999999986421 1  122334444322  12357899999999997

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.41  E-value=1.5e-12  Score=121.30  Aligned_cols=131  Identities=14%  Similarity=0.173  Sum_probs=80.5

Q ss_pred             eeecceeEEEEEecC-ceeeeEecCCCcccc-------ccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHH
Q psy8318         156 VKTTGIIETHFTFKD-LHFKMFDVGGQRSER-------KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF  227 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~-~~~~i~D~~Gq~~~r-------~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~  227 (313)
                      .|..|+    +.+.+ .++.++||+|...-.       .....++++++++++|+|++.++.       .+.+++...+.
T Consensus       195 ~p~~Gi----v~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~-------~d~~e~~~~l~  263 (390)
T PRK12298        195 VPNLGV----VRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDG-------SDPVENARIII  263 (390)
T ss_pred             CcEEEE----EEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccc-------cChHHHHHHHH
Confidence            455554    34443 569999999974311       122345789999999999985321       23334334444


Q ss_pred             HHHHh-CCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         228 DSICN-SKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       228 ~~~~~-~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      +++.. .+.+.+.|++||+||+|+..+......+......+  .....++.+||+++.|+.+++++|.+.+..
T Consensus       264 ~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~--~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        264 NELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEAL--GWEGPVYLISAASGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             HHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHh--CCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence            44433 23345689999999999865321111111111111  011247899999999999999999987754

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.40  E-value=1.1e-12  Score=131.61  Aligned_cols=113  Identities=13%  Similarity=0.098  Sum_probs=74.3

Q ss_pred             EEEecCceeeeEecCCCcc--------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         165 HFTFKDLHFKMFDVGGQRS--------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       165 ~~~~~~~~~~i~D~~Gq~~--------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      ..++++..+.+|||||+..        +...+..+++.+|++|||+|.++            .+......+...+..   
T Consensus       317 ~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~------------~~~~~d~~i~~~Lr~---  381 (712)
T PRK09518        317 DAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQV------------GLTSTDERIVRMLRR---  381 (712)
T ss_pred             EEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCC------------CCCHHHHHHHHHHHh---
Confidence            4455678899999999763        23445567899999999999875            111111122222222   


Q ss_pred             CCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      .+.|+++|+||+|+....   ....+.+. .  ..+ ..+++||++|.||.++|++|.+.+..
T Consensus       382 ~~~pvIlV~NK~D~~~~~---~~~~~~~~-l--g~~-~~~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        382 AGKPVVLAVNKIDDQASE---YDAAEFWK-L--GLG-EPYPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             cCCCEEEEEECcccccch---hhHHHHHH-c--CCC-CeEEEECCCCCCchHHHHHHHHhccc
Confidence            468999999999975421   11111111 1  111 24689999999999999999988754

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.38  E-value=7e-12  Score=122.20  Aligned_cols=110  Identities=12%  Similarity=0.053  Sum_probs=74.5

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      ..+.+|||+||+.++.+|..+++.++++++|+|+++-.       .... .+...++.    .   .+.|+++++||+|+
T Consensus        69 ~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~-------~~qt-~e~i~~l~----~---~~vpiIVv~NK~Dl  133 (590)
T TIGR00491        69 PGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGF-------KPQT-QEALNILR----M---YKTPFVVAANKIDR  133 (590)
T ss_pred             CcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCC-------CHhH-HHHHHHHH----H---cCCCEEEEEECCCc
Confidence            35899999999999999999999999999999998611       0111 22222221    1   36899999999998


Q ss_pred             cccccc-------------CC----c-----------ccc--cCc-------CCCCCCCeEEEEeecccCcCHHHHHHHH
Q psy8318         251 FQEKIT-------------KS----P-----------LTV--CFP-------EYTDQKEIYTHFTCATDTSNIQFVFDAV  293 (313)
Q Consensus       251 ~~~k~~-------------~~----~-----------l~~--~f~-------~~~~~~~~~~~~tSA~~~~~v~~~f~~i  293 (313)
                      ....-.             ..    .           +.+  ..+       ++  ...+.+.++||++|+|+.+++.++
T Consensus       134 ~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~--~~~v~iVpVSA~tGeGideLl~~l  211 (590)
T TIGR00491       134 IPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDF--TKTVAIIPISAITGEGIPELLTML  211 (590)
T ss_pred             cchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhc--CCCceEEEeecCCCCChhHHHHHH
Confidence            632100             00    0           010  000       11  134689999999999999999988


Q ss_pred             HHHH
Q psy8318         294 TDVI  297 (313)
Q Consensus       294 ~~~i  297 (313)
                      ....
T Consensus       212 ~~l~  215 (590)
T TIGR00491       212 AGLA  215 (590)
T ss_pred             HHHH
Confidence            7543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.38  E-value=2.5e-12  Score=125.97  Aligned_cols=118  Identities=19%  Similarity=0.142  Sum_probs=81.0

Q ss_pred             cceeEEEEEecCceeeeEecCCCcccccc------ccccc--cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH
Q psy8318         159 TGIIETHFTFKDLHFKMFDVGGQRSERKK------WIHCF--EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI  230 (313)
Q Consensus       159 ~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~------w~~~~--~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~  230 (313)
                      +......+++++.++++|||+|+..+...      +..|+  ++++++++|+|.++.          .   ....+..++
T Consensus        29 v~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l----------e---r~l~l~~ql   95 (591)
T TIGR00437        29 VEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL----------E---RNLYLTLQL   95 (591)
T ss_pred             EEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc----------h---hhHHHHHHH
Confidence            33444566677888999999999877654      44454  478999999999862          1   223334444


Q ss_pred             HhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         231 CNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       231 ~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      .+    .+.|+++++||+|+.+++....+. +.+.   ...++.+++|||++|+|++++++++.+..
T Consensus        96 ~~----~~~PiIIVlNK~Dl~~~~~i~~d~-~~L~---~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437        96 LE----LGIPMILALNLVDEAEKKGIRIDE-EKLE---ERLGVPVVPTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             Hh----cCCCEEEEEehhHHHHhCCChhhH-HHHH---HHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            33    368999999999986532211111 2222   12456789999999999999999998753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>KOG1532|consensus

Probab=99.37  E-value=1.6e-12  Score=111.75  Aligned_cols=118  Identities=16%  Similarity=0.209  Sum_probs=72.9

Q ss_pred             ceeeeEecCCCcccccccccc-------c--cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318         171 LHFKMFDVGGQRSERKKWIHC-------F--EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI  241 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~-------~--~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi  241 (313)
                      ..+.++||+||- +-..|..-       +  ....+|+||+|...       ..++..+-...-+-.+++-.   .+.|+
T Consensus       116 ~~~~liDTPGQI-E~FtWSAsGsIIte~lass~ptvv~YvvDt~r-------s~~p~tFMSNMlYAcSilyk---tklp~  184 (366)
T KOG1532|consen  116 FDYVLIDTPGQI-EAFTWSASGSIITETLASSFPTVVVYVVDTPR-------STSPTTFMSNMLYACSILYK---TKLPF  184 (366)
T ss_pred             cCEEEEcCCCce-EEEEecCCccchHhhHhhcCCeEEEEEecCCc-------CCCchhHHHHHHHHHHHHHh---ccCCe
Confidence            567778888873 23345431       1  22468899999875       22244555455444555432   57899


Q ss_pred             EEEeecCCcccccccCCcc------cc--------cCcCCC---------CCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         242 ILFLNKNDLFQEKITKSPL------TV--------CFPEYT---------DQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       242 ilv~NK~Dl~~~k~~~~~l------~~--------~f~~~~---------~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      |+++||+|+.+.....+-.      .+        ++....         -.+++....+||.+|.|..+.|..|.+.+-
T Consensus       185 ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd  264 (366)
T KOG1532|consen  185 IVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD  264 (366)
T ss_pred             EEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence            9999999987643322111      11        111110         124567888999999999999999887664


Q ss_pred             H
Q psy8318         299 K  299 (313)
Q Consensus       299 ~  299 (313)
                      +
T Consensus       265 E  265 (366)
T KOG1532|consen  265 E  265 (366)
T ss_pred             H
Confidence            3

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.36  E-value=9.4e-12  Score=110.69  Aligned_cols=83  Identities=14%  Similarity=0.077  Sum_probs=62.9

Q ss_pred             eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      +.-|+......+.+++.++.+|||+|+..+...|..+++.++++|+|+|.++.-           .......+..+..  
T Consensus        48 rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~-----------~~~t~~~~~~~~~--  114 (270)
T cd01886          48 RGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGV-----------EPQTETVWRQADR--  114 (270)
T ss_pred             CCcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCC-----------CHHHHHHHHHHHH--
Confidence            344555556677889999999999999988888999999999999999988621           1222344444322  


Q ss_pred             CCCCCcEEEEeecCCccc
Q psy8318         235 WFMDTSIILFLNKNDLFQ  252 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~  252 (313)
                        .++|++++.||+|+.+
T Consensus       115 --~~~p~ivviNK~D~~~  130 (270)
T cd01886         115 --YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             --cCCCEEEEEECCCCCC
Confidence              3579999999999865

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.35  E-value=8.7e-12  Score=111.10  Aligned_cols=83  Identities=14%  Similarity=0.145  Sum_probs=62.2

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      ..|+......+.+++..+++|||+|+..+...+..++..++++++|+|.++.          .. ......++.+..   
T Consensus        49 ~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g----------~~-~~~~~~~~~~~~---  114 (268)
T cd04170          49 KMSISTSVAPLEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSG----------VE-VGTEKLWEFADE---  114 (268)
T ss_pred             cccccceeEEEEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCC----------CC-HHHHHHHHHHHH---
Confidence            4555555667778889999999999988878888999999999999999872          11 223344443322   


Q ss_pred             CCCCcEEEEeecCCcccc
Q psy8318         236 FMDTSIILFLNKNDLFQE  253 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~  253 (313)
                       .+.|+++++||+|....
T Consensus       115 -~~~p~iivvNK~D~~~~  131 (268)
T cd04170         115 -AGIPRIIFINKMDRERA  131 (268)
T ss_pred             -cCCCEEEEEECCccCCC
Confidence             35799999999997653

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK13768 GTPase; Provisional

Probab=99.29  E-value=3e-12  Score=112.94  Aligned_cols=116  Identities=15%  Similarity=0.168  Sum_probs=69.5

Q ss_pred             ceeeeEecCCCcc---ccccccccccC-----CcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318         171 LHFKMFDVGGQRS---ERKKWIHCFEG-----VTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII  242 (313)
Q Consensus       171 ~~~~i~D~~Gq~~---~r~~w~~~~~~-----~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii  242 (313)
                      ..+.+||++|+..   ++..|..+++.     +++++|++|.+....       ...+... .++......  ..+.|++
T Consensus        97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~-------~~d~~~~-~~l~~~~~~--~~~~~~i  166 (253)
T PRK13768         97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKT-------PSDFVSL-LLLALSVQL--RLGLPQI  166 (253)
T ss_pred             CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCC-------HHHHHHH-HHHHHHHHH--HcCCCEE
Confidence            4688999999855   46667555433     889999999975100       1111111 111111111  1368999


Q ss_pred             EEeecCCcccccccCCcccccCcC-------------------------CCC-CCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         243 LFLNKNDLFQEKITKSPLTVCFPE-------------------------YTD-QKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       243 lv~NK~Dl~~~k~~~~~l~~~f~~-------------------------~~~-~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      +|+||+|+..+... ..+...+.+                         +.. .....++++||++++|++++.++|.+.
T Consensus       167 ~v~nK~D~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~  245 (253)
T PRK13768        167 PVLNKADLLSEEEL-ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEV  245 (253)
T ss_pred             EEEEhHhhcCchhH-HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHH
Confidence            99999998653111 111111111                         100 122467899999999999999999876


Q ss_pred             H
Q psy8318         297 I  297 (313)
Q Consensus       297 i  297 (313)
                      +
T Consensus       246 l  246 (253)
T PRK13768        246 F  246 (253)
T ss_pred             c
Confidence            5

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.28  E-value=1.5e-11  Score=100.54  Aligned_cols=108  Identities=9%  Similarity=0.129  Sum_probs=64.7

Q ss_pred             eeeeEecCCCcc----------cccccccccc---CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCC
Q psy8318         172 HFKMFDVGGQRS----------ERKKWIHCFE---GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMD  238 (313)
Q Consensus       172 ~~~i~D~~Gq~~----------~r~~w~~~~~---~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~  238 (313)
                      .+.+||++|...          +...+..|+.   .++++++++|.....        .....+...++..       .+
T Consensus        46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--------~~~~~~~~~~l~~-------~~  110 (170)
T cd01876          46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGP--------TEIDLEMLDWLEE-------LG  110 (170)
T ss_pred             eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCC--------CHhHHHHHHHHHH-------cC
Confidence            899999999432          3344444554   357888999887511        0111122222222       24


Q ss_pred             CcEEEEeecCCcccccccC---CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         239 TSIILFLNKNDLFQEKITK---SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       239 ~piilv~NK~Dl~~~k~~~---~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      .|+++++||+|+.......   ..+...+...  .....++++||+++.++.++++++.+.
T Consensus       111 ~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         111 IPFLVVLTKADKLKKSELAKALKEIKKELKLF--EIDPPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             CCEEEEEEchhcCChHHHHHHHHHHHHHHHhc--cCCCceEEEecCCCCCHHHHHHHHHHh
Confidence            7999999999985321111   1122111100  133467899999999999999998864

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK13351 elongation factor G; Reviewed

Probab=99.27  E-value=2.7e-11  Score=121.53  Aligned_cols=84  Identities=11%  Similarity=0.105  Sum_probs=66.0

Q ss_pred             eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      +..|++.....+.+++..+++|||+|+..+...|..+++.+|++|+|+|.++          .... .....+..+..  
T Consensus        57 r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~----------~~~~-~~~~~~~~~~~--  123 (687)
T PRK13351         57 RGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVT----------GVQP-QTETVWRQADR--  123 (687)
T ss_pred             cCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCC----------CCCH-HHHHHHHHHHh--
Confidence            5667777777888899999999999999999999999999999999999987          2222 23344444322  


Q ss_pred             CCCCCcEEEEeecCCcccc
Q psy8318         235 WFMDTSIILFLNKNDLFQE  253 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~~  253 (313)
                        .++|+++|+||+|+...
T Consensus       124 --~~~p~iiviNK~D~~~~  140 (687)
T PRK13351        124 --YGIPRLIFINKMDRVGA  140 (687)
T ss_pred             --cCCCEEEEEECCCCCCC
Confidence              35899999999998764

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.26  E-value=4.3e-11  Score=103.63  Aligned_cols=114  Identities=8%  Similarity=0.112  Sum_probs=71.7

Q ss_pred             EEecCceeeeEecCCCcccccccccccc--CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEE
Q psy8318         166 FTFKDLHFKMFDVGGQRSERKKWIHCFE--GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIIL  243 (313)
Q Consensus       166 ~~~~~~~~~i~D~~Gq~~~r~~w~~~~~--~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piil  243 (313)
                      ++.++..+.+.|++|++.+.+--.....  .+|++++|+|...           .-.......+..+..    .+.|+++
T Consensus        79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~-----------g~~~~d~~~l~~l~~----~~ip~iv  143 (224)
T cd04165          79 CEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANA-----------GIIGMTKEHLGLALA----LNIPVFV  143 (224)
T ss_pred             eeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----cCCCEEE
Confidence            3456788999999999877554333343  5899999999875           112333334443322    3579999


Q ss_pred             EeecCCccccc-cc--CCcccccCcC----------------------CCCCCCeEEEEeecccCcCHHHHHHHHH
Q psy8318         244 FLNKNDLFQEK-IT--KSPLTVCFPE----------------------YTDQKEIYTHFTCATDTSNIQFVFDAVT  294 (313)
Q Consensus       244 v~NK~Dl~~~k-~~--~~~l~~~f~~----------------------~~~~~~~~~~~tSA~~~~~v~~~f~~i~  294 (313)
                      ++||+|+..+. ..  ...+.+.+..                      .......+++.+||.+|+|++++.+.|.
T Consensus       144 vvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         144 VVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             EEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            99999975431 11  1122222210                      0012345789999999999999887664

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.25  E-value=3.2e-11  Score=121.09  Aligned_cols=114  Identities=17%  Similarity=0.136  Sum_probs=76.3

Q ss_pred             EEEEEecCceeeeEecCCCcccccc----------ccccc--cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH
Q psy8318         163 ETHFTFKDLHFKMFDVGGQRSERKK----------WIHCF--EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI  230 (313)
Q Consensus       163 ~~~~~~~~~~~~i~D~~Gq~~~r~~----------w~~~~--~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~  230 (313)
                      ...++.++.++++||++|+.++...          ...++  ..+|++++|+|.++.          .+   ...+..++
T Consensus        42 ~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~l----------er---~l~l~~ql  108 (772)
T PRK09554         42 EGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL----------ER---NLYLTLQL  108 (772)
T ss_pred             EEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcc----------hh---hHHHHHHH
Confidence            3345667889999999998765432          22343  479999999998862          22   23344444


Q ss_pred             HhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         231 CNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       231 ~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      .+    .+.|+++++||+|+.+++-..... +.+.   ...++.++++||.+|+|++++.+.+.+..
T Consensus       109 ~e----~giPvIvVlNK~Dl~~~~~i~id~-~~L~---~~LG~pVvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        109 LE----LGIPCIVALNMLDIAEKQNIRIDI-DALS---ARLGCPVIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             HH----cCCCEEEEEEchhhhhccCcHHHH-HHHH---HHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence            33    358999999999986432111111 1111   12456789999999999999998887654

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.25  E-value=7e-11  Score=100.16  Aligned_cols=115  Identities=16%  Similarity=0.211  Sum_probs=72.8

Q ss_pred             ecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318         158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM  237 (313)
Q Consensus       158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~  237 (313)
                      |+......++.++.++.+.||+|+..+..-.......+|++++|+|.+.           .-.......+..+..    .
T Consensus        52 Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~-----------g~~~~~~~~~~~~~~----~  116 (195)
T cd01884          52 TINTAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATD-----------GPMPQTREHLLLARQ----V  116 (195)
T ss_pred             cEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----c
Confidence            3333344556677889999999998766555556788999999999875           111223333333322    2


Q ss_pred             CCc-EEEEeecCCccccc-c---cCCcccccCcCCC-CCCCeEEEEeecccCcCHH
Q psy8318         238 DTS-IILFLNKNDLFQEK-I---TKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQ  287 (313)
Q Consensus       238 ~~p-iilv~NK~Dl~~~k-~---~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~  287 (313)
                      +.| ++++.||+|+..+. .   ...++...+..+. ....+.++++||.+|.|+.
T Consensus       117 ~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~  172 (195)
T cd01884         117 GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD  172 (195)
T ss_pred             CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence            355 78999999985321 1   1123444444331 2235789999999999864

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.22  E-value=4.2e-11  Score=117.14  Aligned_cols=107  Identities=11%  Similarity=0.103  Sum_probs=75.9

Q ss_pred             eeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCccc
Q psy8318         173 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQ  252 (313)
Q Consensus       173 ~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  252 (313)
                      +.+|||+|++.+...|...+..+|++|+|+|.++-           -..++...+..+ ..   .++|+++++||+|+..
T Consensus        73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g-----------~~~qt~e~i~~~-~~---~~vpiIvviNK~D~~~  137 (586)
T PRK04004         73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEG-----------FQPQTIEAINIL-KR---RKTPFVVAANKIDRIP  137 (586)
T ss_pred             EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCC-----------CCHhHHHHHHHH-HH---cCCCEEEEEECcCCch
Confidence            78999999999999999889999999999999861           111222222222 11   3689999999999742


Q ss_pred             ccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhhhcCCc
Q psy8318         253 EKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKDCGIR  308 (313)
Q Consensus       253 ~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~~~~~~  308 (313)
                      .             +....+..++++++.++.++.+.|+++...+... +...|+.
T Consensus       138 ~-------------~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~-L~~~g~~  179 (586)
T PRK04004        138 G-------------WKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQ-LSELGFS  179 (586)
T ss_pred             h-------------hhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHH-HHhcCCC
Confidence            1             1111345577889999999999998888777533 4555543

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.22  E-value=5.8e-11  Score=116.77  Aligned_cols=113  Identities=18%  Similarity=0.243  Sum_probs=74.0

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc-EEEEeec
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS-IILFLNK  247 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p-iilv~NK  247 (313)
                      ++..+.+|||+|++.+.+.-...+.++|++++|+|.++           .-...+.+.+. ++..   .++| ++|++||
T Consensus        49 ~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~e-----------g~~~qT~ehl~-il~~---lgi~~iIVVlNK  113 (614)
T PRK10512         49 DGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDD-----------GVMAQTREHLA-ILQL---TGNPMLTVALTK  113 (614)
T ss_pred             CCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCC-----------CCcHHHHHHHH-HHHH---cCCCeEEEEEEC
Confidence            35678999999998886655666889999999999885           11222222222 2221   1244 6899999


Q ss_pred             CCcccc-ccc--CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         248 NDLFQE-KIT--KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       248 ~Dl~~~-k~~--~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +|+..+ .+.  ..++.+.+... .-....++++||++|+|+.+++++|.+..
T Consensus       114 iDlv~~~~~~~v~~ei~~~l~~~-~~~~~~ii~VSA~tG~gI~~L~~~L~~~~  165 (614)
T PRK10512        114 ADRVDEARIAEVRRQVKAVLREY-GFAEAKLFVTAATEGRGIDALREHLLQLP  165 (614)
T ss_pred             CccCCHHHHHHHHHHHHHHHHhc-CCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence            998642 111  12333333222 11235689999999999999999988654

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.17  E-value=1.8e-10  Score=99.51  Aligned_cols=67  Identities=10%  Similarity=0.118  Sum_probs=52.8

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      +..+++|||+|+..+......+++.++++|+|+|.++          . -..+....+.....    .+.|+++++||+|
T Consensus        72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~----------g-~~~~t~~~l~~~~~----~~~p~ilviNKiD  136 (222)
T cd01885          72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVE----------G-VCVQTETVLRQALK----ERVKPVLVINKID  136 (222)
T ss_pred             ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCC----------C-CCHHHHHHHHHHHH----cCCCEEEEEECCC
Confidence            6789999999999998888889999999999999986          1 22334444444433    3579999999999


Q ss_pred             cc
Q psy8318         250 LF  251 (313)
Q Consensus       250 l~  251 (313)
                      +.
T Consensus       137 ~~  138 (222)
T cd01885         137 RL  138 (222)
T ss_pred             cc
Confidence            76

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>COG1159 Era GTPase [General function prediction only]

Probab=99.17  E-value=2.3e-10  Score=100.34  Aligned_cols=114  Identities=14%  Similarity=0.146  Sum_probs=72.2

Q ss_pred             ecCceeeeEecCCCcccccccc--------ccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCC
Q psy8318         168 FKDLHFKMFDVGGQRSERKKWI--------HCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDT  239 (313)
Q Consensus       168 ~~~~~~~i~D~~Gq~~~r~~w~--------~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~  239 (313)
                      .++.++.+.||+|-..-+..-.        .-+.++|.|+||+|.++          ... ......++.+ ++   .+.
T Consensus        51 ~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~----------~~~-~~d~~il~~l-k~---~~~  115 (298)
T COG1159          51 TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADE----------GWG-PGDEFILEQL-KK---TKT  115 (298)
T ss_pred             cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccc----------cCC-ccHHHHHHHH-hh---cCC
Confidence            3678999999999544333222        23688999999999986          111 1122223333 22   467


Q ss_pred             cEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         240 SIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       240 piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      |++++.||+|....+....++.+.+...  .....++++||+.|.|+..+.+.+...+-
T Consensus       116 pvil~iNKID~~~~~~~l~~~~~~~~~~--~~f~~ivpiSA~~g~n~~~L~~~i~~~Lp  172 (298)
T COG1159         116 PVILVVNKIDKVKPKTVLLKLIAFLKKL--LPFKEIVPISALKGDNVDTLLEIIKEYLP  172 (298)
T ss_pred             CeEEEEEccccCCcHHHHHHHHHHHHhh--CCcceEEEeeccccCCHHHHHHHHHHhCC
Confidence            9999999999765433112222221111  01226899999999999999888877653

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.17  E-value=3.4e-12  Score=111.34  Aligned_cols=112  Identities=13%  Similarity=0.161  Sum_probs=61.2

Q ss_pred             eeeeEecCCCccccccccccc--------cCCcEEEEEEecCCcccccccccccccHHHH-HHHHHHHHhCCCCCCCcEE
Q psy8318         172 HFKMFDVGGQRSERKKWIHCF--------EGVTAIIFCVALSGYDSVLAEDEEMNRMIES-MKLFDSICNSKWFMDTSII  242 (313)
Q Consensus       172 ~~~i~D~~Gq~~~r~~w~~~~--------~~~~~iifv~dls~~d~~~~e~~~~~~l~e~-~~~~~~~~~~~~~~~~pii  242 (313)
                      .+.++||+||...-.-|...-        ...-+++|++|..-...       +..+-.+ +..+..+++    .+.|.+
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~-------~~~f~s~~L~s~s~~~~----~~lP~v  160 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSD-------PSKFVSSLLLSLSIMLR----LELPHV  160 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SS-------HHHHHHHHHHHHHHHHH----HTSEEE
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccC-------hhhHHHHHHHHHHHHhh----CCCCEE
Confidence            688999999987665554433        45668999999886321       2222222 222222222    368999


Q ss_pred             EEeecCCccccc-----------------------ccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHH
Q psy8318         243 LFLNKNDLFQEK-----------------------ITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       243 lv~NK~Dl~~~k-----------------------~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      .++||+|+..+.                       -....+...+.+|   ... .++..|+.+++++.+++..|-+.+
T Consensus       161 nvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~---~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  161 NVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDF---GLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             EEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCC---SSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             EeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhc---CCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            999999997621                       0112333444555   233 789999999999999998877643

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.15  E-value=1.9e-10  Score=111.23  Aligned_cols=83  Identities=18%  Similarity=0.235  Sum_probs=61.5

Q ss_pred             eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      +..|+......+++++..+++|||+|+..+......+++.++++|+|+|.++-           -......+++.. .  
T Consensus        63 rgiSi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-----------v~~~t~~l~~~~-~--  128 (526)
T PRK00741         63 RGISVTSSVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKG-----------VEPQTRKLMEVC-R--  128 (526)
T ss_pred             hCCceeeeeEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCC-----------CCHHHHHHHHHH-H--
Confidence            34445555667888999999999999998887777789999999999999861           111233444332 2  


Q ss_pred             CCCCCcEEEEeecCCccc
Q psy8318         235 WFMDTSIILFLNKNDLFQ  252 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~  252 (313)
                       ..++|+++++||+|+..
T Consensus       129 -~~~iPiiv~iNK~D~~~  145 (526)
T PRK00741        129 -LRDTPIFTFINKLDRDG  145 (526)
T ss_pred             -hcCCCEEEEEECCcccc
Confidence             24689999999999865

>cd04167 Snu114p Snu114p subfamily

Probab=99.15  E-value=3.6e-10  Score=97.22  Aligned_cols=67  Identities=15%  Similarity=0.180  Sum_probs=51.1

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      ...+++|||+|+..+...+..++..++++|+|+|.++.          ... ....++.....    .+.|+++++||+|
T Consensus        70 ~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~----------~~~-~~~~~~~~~~~----~~~p~iiviNK~D  134 (213)
T cd04167          70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEG----------VTS-NTERLIRHAIL----EGLPIVLVINKID  134 (213)
T ss_pred             EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCC----------CCH-HHHHHHHHHHH----cCCCEEEEEECcc
Confidence            47899999999999988888999999999999999862          222 22333333322    3489999999999


Q ss_pred             cc
Q psy8318         250 LF  251 (313)
Q Consensus       250 l~  251 (313)
                      +.
T Consensus       135 ~~  136 (213)
T cd04167         135 RL  136 (213)
T ss_pred             cC
Confidence            74

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>TIGR00503 prfC peptide chain release factor 3

Probab=99.15  E-value=1.8e-10  Score=111.39  Aligned_cols=82  Identities=17%  Similarity=0.212  Sum_probs=58.8

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .-|+......+++++..+++|||+|+..+......+++.++++|+|+|.++-           -......+++ .+..  
T Consensus        65 gisi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-----------v~~~t~~l~~-~~~~--  130 (527)
T TIGR00503        65 GISITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG-----------VETRTRKLME-VTRL--  130 (527)
T ss_pred             CCcEEEEEEEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCC-----------CCHHHHHHHH-HHHh--
Confidence            3344445567788899999999999988776556678999999999998861           1112233333 3322  


Q ss_pred             CCCCcEEEEeecCCccc
Q psy8318         236 FMDTSIILFLNKNDLFQ  252 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~  252 (313)
                       .++|+++|+||+|+..
T Consensus       131 -~~~PiivviNKiD~~~  146 (527)
T TIGR00503       131 -RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             -cCCCEEEEEECccccC
Confidence             4689999999999853

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.14  E-value=3.7e-10  Score=105.99  Aligned_cols=117  Identities=20%  Similarity=0.259  Sum_probs=70.7

Q ss_pred             EEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc-EEE
Q psy8318         165 HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS-IIL  243 (313)
Q Consensus       165 ~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p-iil  243 (313)
                      .++.++..+.++||+|++.+.+.-..-...+|++++|+|.++           .-...+.+.+..+..    .++| +++
T Consensus        69 ~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~-----------g~~~~t~~~~~~~~~----~g~~~~Iv  133 (394)
T PRK12736         69 EYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD-----------GPMPQTREHILLARQ----VGVPYLVV  133 (394)
T ss_pred             EecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC-----------CCchhHHHHHHHHHH----cCCCEEEE
Confidence            344466789999999998766544444567899999999875           112223333333322    2467 678


Q ss_pred             EeecCCcccc-ccc---CCcccccCcCCC-CCCCeEEEEeecccCc--------CHHHHHHHHHHH
Q psy8318         244 FLNKNDLFQE-KIT---KSPLTVCFPEYT-DQKEIYTHFTCATDTS--------NIQFVFDAVTDV  296 (313)
Q Consensus       244 v~NK~Dl~~~-k~~---~~~l~~~f~~~~-~~~~~~~~~tSA~~~~--------~v~~~f~~i~~~  296 (313)
                      ++||+|+..+ ...   ..++...+..+. ....+.++++||++|.        ++.++++.+...
T Consensus       134 viNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~  199 (394)
T PRK12736        134 FLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEY  199 (394)
T ss_pred             EEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHh
Confidence            9999998632 111   123333332221 1124678999999983        455555555544

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.13  E-value=8.6e-10  Score=102.20  Aligned_cols=120  Identities=18%  Similarity=0.183  Sum_probs=82.0

Q ss_pred             eecceeEEEEEecCceeeeEecCCCcccccc--------ccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHH
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKK--------WIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFD  228 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~--------w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~  228 (313)
                      .|.-+.+..+..+++.+.+.||+|-+.-...        -..-.+.||.|+||+|.+..           --.+-...++
T Consensus       251 TTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~-----------~~~~d~~~~~  319 (454)
T COG0486         251 TTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQP-----------LDKEDLALIE  319 (454)
T ss_pred             CccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCC-----------CchhhHHHHH
Confidence            4455677888999999999999998643211        12346789999999999961           1122223333


Q ss_pred             HHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         229 SICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       229 ~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                           ....+.|+++|.||.|+..+.. ...+ +..      .+...+.+||++|+|++.+-+.|.+.+...
T Consensus       320 -----~~~~~~~~i~v~NK~DL~~~~~-~~~~-~~~------~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         320 -----LLPKKKPIIVVLNKADLVSKIE-LESE-KLA------NGDAIISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             -----hcccCCCEEEEEechhcccccc-cchh-hcc------CCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence                 1235689999999999987522 2211 111      233678999999999999888888766544

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.12  E-value=1.3e-10  Score=111.24  Aligned_cols=119  Identities=11%  Similarity=0.031  Sum_probs=70.4

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      -|+-.....++.++.++.++||+|++.+.+....-...+|++++|+|..+--        .....+...+...+      
T Consensus        93 iTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~--------~~qt~~~~~l~~~l------  158 (474)
T PRK05124         93 ITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGV--------LDQTRRHSFIATLL------  158 (474)
T ss_pred             CCeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc--------cccchHHHHHHHHh------
Confidence            3444444456667889999999999877554444468999999999987510        01111112222111      


Q ss_pred             CCCcEEEEeecCCcccccc-cCC----cccccCcCCCCCCCeEEEEeecccCcCHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKI-TKS----PLTVCFPEYTDQKEIYTHFTCATDTSNIQFV  289 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~-~~~----~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~  289 (313)
                      ...|++|++||+|+.+... ...    .+...+..+.......++++||++|+|+.+.
T Consensus       159 g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        159 GIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             CCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            1247899999999863211 011    1211111110012467899999999998753

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.12  E-value=2.9e-10  Score=108.03  Aligned_cols=123  Identities=14%  Similarity=0.098  Sum_probs=76.8

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCC--cccccccccccccHHHHHHHHHHHHhC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSG--YDSVLAEDEEMNRMIESMKLFDSICNS  233 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~--~d~~~~e~~~~~~l~e~~~~~~~~~~~  233 (313)
                      .-|+......++.++..+++.|++||+.|.+.-...+..+|++|+|+|.++  |.....   ......+...+.    ..
T Consensus        70 GiTi~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~---~~~qT~eh~~~~----~~  142 (447)
T PLN00043         70 GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGIS---KDGQTREHALLA----FT  142 (447)
T ss_pred             CceEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccC---CCchHHHHHHHH----HH
Confidence            344445555667788999999999999998888888899999999999986  100000   001222222221    11


Q ss_pred             CCCCCC-cEEEEeecCCccccccc-------CCcccccCcCCC-CCCCeEEEEeecccCcCHHH
Q psy8318         234 KWFMDT-SIILFLNKNDLFQEKIT-------KSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQF  288 (313)
Q Consensus       234 ~~~~~~-piilv~NK~Dl~~~k~~-------~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~  288 (313)
                         .++ ++++++||+|+......       ..++...+.... ....+.++++||.+|+|+.+
T Consensus       143 ---~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        143 ---LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             ---cCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence               234 57889999997521111       123444433221 12347899999999999853

>PRK12735 elongation factor Tu; Reviewed

Probab=99.12  E-value=4.1e-10  Score=105.79  Aligned_cols=107  Identities=15%  Similarity=0.192  Sum_probs=64.5

Q ss_pred             EEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE-
Q psy8318         164 THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII-  242 (313)
Q Consensus       164 ~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii-  242 (313)
                      ..++.++..+.++||+|++.+.+.-..-...+|++++|+|..+-           -.....+.+..+..    .++|.+ 
T Consensus        68 ~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g-----------~~~qt~e~l~~~~~----~gi~~ii  132 (396)
T PRK12735         68 VEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG-----------PMPQTREHILLARQ----VGVPYIV  132 (396)
T ss_pred             eEEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC-----------CchhHHHHHHHHHH----cCCCeEE
Confidence            34445677899999999976654444445678999999998851           11222233333221    246755 


Q ss_pred             EEeecCCccccc-c---cCCcccccCcCCC-CCCCeEEEEeecccCcC
Q psy8318         243 LFLNKNDLFQEK-I---TKSPLTVCFPEYT-DQKEIYTHFTCATDTSN  285 (313)
Q Consensus       243 lv~NK~Dl~~~k-~---~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~  285 (313)
                      +++||+|+..+. .   ...++...+..+. ....+.++++||.+|.|
T Consensus       133 vvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n  180 (396)
T PRK12735        133 VFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALE  180 (396)
T ss_pred             EEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhcccc
Confidence            679999986321 1   1123334443331 11247789999999854

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.11  E-value=2.5e-10  Score=107.50  Aligned_cols=117  Identities=12%  Similarity=0.051  Sum_probs=70.7

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      -|+......++.++.++.++||+|++.+-+.-..-...+|++|+|+|..+--        .....+...+...+      
T Consensus        66 iTid~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~--------~~qt~~~~~~~~~~------  131 (406)
T TIGR02034        66 ITIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGV--------LEQTRRHSYIASLL------  131 (406)
T ss_pred             cCeEeeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCC--------ccccHHHHHHHHHc------
Confidence            3444445566667889999999999877554445578899999999987510        11111222222111      


Q ss_pred             CCCcEEEEeecCCccccccc-----CCcccccCcCCCCCCCeEEEEeecccCcCHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKIT-----KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQF  288 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~-----~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~  288 (313)
                      ...++++++||+|+....-.     ...+...+..+ ....+.++++||.+|+|+.+
T Consensus       132 ~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       132 GIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQL-GFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             CCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHc-CCCCccEEEeecccCCCCcc
Confidence            23478999999998642110     11222111111 11245689999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.08  E-value=6.6e-10  Score=105.65  Aligned_cols=122  Identities=18%  Similarity=0.135  Sum_probs=75.4

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCccccccccc--ccccHHHHHHHHHHHHhCC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDE--EMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~--~~~~l~e~~~~~~~~~~~~  234 (313)
                      -|+.+....++.++..+.++|++|++.|-+........+|++|+|+|.++--   .|..  ......+...+...     
T Consensus        71 iTid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~---~e~~~~~~~qT~eh~~~~~~-----  142 (446)
T PTZ00141         71 ITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGE---FEAGISKDGQTREHALLAFT-----  142 (446)
T ss_pred             EeEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCc---eecccCCCccHHHHHHHHHH-----
Confidence            3444445566778899999999999988777777788999999999988510   0000  00222333332221     


Q ss_pred             CCCCCc-EEEEeecCCccc-----ccc--cCCcccccCcCCC-CCCCeEEEEeecccCcCHHH
Q psy8318         235 WFMDTS-IILFLNKNDLFQ-----EKI--TKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQF  288 (313)
Q Consensus       235 ~~~~~p-iilv~NK~Dl~~-----~k~--~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~  288 (313)
                        .++| ++++.||+|...     ++.  ...++...|.... ....+.++++||.+|+|+.+
T Consensus       143 --~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        143 --LGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             --cCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence              2444 789999999532     111  1123444443221 12357899999999999853

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.08  E-value=8.8e-10  Score=103.54  Aligned_cols=106  Identities=15%  Similarity=0.212  Sum_probs=64.3

Q ss_pred             EEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE-E
Q psy8318         164 THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI-I  242 (313)
Q Consensus       164 ~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi-i  242 (313)
                      ..++.++.++.+|||+|++.+.+.-..-...+|++++|+|..+           .-...+.+.+..+..    .++|. +
T Consensus        68 ~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~-----------g~~~qt~e~l~~~~~----~gi~~iI  132 (394)
T TIGR00485        68 VEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATD-----------GPMPQTREHILLARQ----VGVPYIV  132 (394)
T ss_pred             EEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----cCCCEEE
Confidence            3444466789999999998765433333456799999999885           112223333333322    24565 5


Q ss_pred             EEeecCCccccc-cc---CCcccccCcCCC-CCCCeEEEEeecccCc
Q psy8318         243 LFLNKNDLFQEK-IT---KSPLTVCFPEYT-DQKEIYTHFTCATDTS  284 (313)
Q Consensus       243 lv~NK~Dl~~~k-~~---~~~l~~~f~~~~-~~~~~~~~~tSA~~~~  284 (313)
                      +++||+|+.... ..   ..++...+..+. ....+.++++||.+|.
T Consensus       133 vvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       133 VFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             EEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence            689999986421 11   123444444442 1123678999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12740 elongation factor G; Reviewed

Probab=99.01  E-value=1.7e-09  Score=108.34  Aligned_cols=83  Identities=14%  Similarity=0.143  Sum_probs=64.9

Q ss_pred             eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      +..|++.....+.+++..+.+|||+|+..+...|..++..+|++|+|+|.++.          .. ......+..+..  
T Consensus        44 rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~----------~~-~~~~~~~~~~~~--  110 (668)
T PRK12740         44 RGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGG----------VE-PQTETVWRQAEK--  110 (668)
T ss_pred             cCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCC----------cC-HHHHHHHHHHHH--
Confidence            56677777788888999999999999988888888899999999999999862          11 223344444322  


Q ss_pred             CCCCCcEEEEeecCCccc
Q psy8318         235 WFMDTSIILFLNKNDLFQ  252 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~  252 (313)
                        .+.|+++|+||+|+..
T Consensus       111 --~~~p~iiv~NK~D~~~  126 (668)
T PRK12740        111 --YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             --cCCCEEEEEECCCCCC
Confidence              3579999999999864

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.00  E-value=7.8e-10  Score=97.96  Aligned_cols=126  Identities=22%  Similarity=0.237  Sum_probs=82.5

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCcc----cccc----cccccc-CCcEEEEEEecCCcccccccccccccHHHHHHH
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRS----ERKK----WIHCFE-GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKL  226 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~----~r~~----w~~~~~-~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~  226 (313)
                      -.|.|++...|+.+..++|++||+|--.    +|.-    -...++ =.++|+|++|.|.        .+-.++++...+
T Consensus       200 FTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se--------~cgy~lE~Q~~L  271 (346)
T COG1084         200 FTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSE--------TCGYSLEEQISL  271 (346)
T ss_pred             ccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCcc--------ccCCCHHHHHHH
Confidence            3688999999999999999999999421    1110    011122 2678999999997        346788999999


Q ss_pred             HHHHHhCCCCCCCcEEEEeecCCcccc-cccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         227 FDSICNSKWFMDTSIILFLNKNDLFQE-KITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       227 ~~~~~~~~~~~~~piilv~NK~Dl~~~-k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      |+++..  .+. .|+++|.||.|+.+. ++....  ..+..-   -......+++..+.+++.+-..+....
T Consensus       272 ~~eIk~--~f~-~p~v~V~nK~D~~~~e~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~d~~~~~v~~~a  335 (346)
T COG1084         272 LEEIKE--LFK-APIVVVINKIDIADEEKLEEIE--ASVLEE---GGEEPLKISATKGCGLDKLREEVRKTA  335 (346)
T ss_pred             HHHHHH--hcC-CCeEEEEecccccchhHHHHHH--HHHHhh---ccccccceeeeehhhHHHHHHHHHHHh
Confidence            999854  344 899999999998732 222211  111100   112245567777777776665555543

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.00  E-value=1.2e-09  Score=100.94  Aligned_cols=110  Identities=18%  Similarity=0.234  Sum_probs=73.8

Q ss_pred             EEEecCceeeeEecCCCccc---------cccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         165 HFTFKDLHFKMFDVGGQRSE---------RKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       165 ~~~~~~~~~~i~D~~Gq~~~---------r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      ..++.+..+.++||||-+..         +.+....++.||++|||+|..+            .+...-+.+.+++..  
T Consensus        45 ~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~------------Git~~D~~ia~~Lr~--  110 (444)
T COG1160          45 DAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGRE------------GITPADEEIAKILRR--  110 (444)
T ss_pred             eeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCC------------CCCHHHHHHHHHHHh--
Confidence            44667788999999997632         2233445788999999999875            222233333333331  


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                       .+.|++||.||+|-........++   +.     .++ .++.+||..|.|+.++.+++.+.+
T Consensus       111 -~~kpviLvvNK~D~~~~e~~~~ef---ys-----lG~g~~~~ISA~Hg~Gi~dLld~v~~~l  164 (444)
T COG1160         111 -SKKPVILVVNKIDNLKAEELAYEF---YS-----LGFGEPVPISAEHGRGIGDLLDAVLELL  164 (444)
T ss_pred             -cCCCEEEEEEcccCchhhhhHHHH---Hh-----cCCCCceEeehhhccCHHHHHHHHHhhc
Confidence             458999999999966321111122   11     121 468999999999999999998876

>KOG1489|consensus

Probab=99.00  E-value=2.2e-09  Score=94.54  Aligned_cols=123  Identities=18%  Similarity=0.234  Sum_probs=79.8

Q ss_pred             eeecceeEEEEEecC-ceeeeEecCCC-------ccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHH
Q psy8318         156 VKTTGIIETHFTFKD-LHFKMFDVGGQ-------RSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF  227 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~-~~~~i~D~~Gq-------~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~  227 (313)
                      .|++|.    +.+++ ..+++-|.+|-       +...-....+.+.|+.++||+|++.+..       .+-++.-..+.
T Consensus       232 ~P~iG~----v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~-------~~p~~~~~lL~  300 (366)
T KOG1489|consen  232 RPHIGT----VNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQL-------RNPWQQLQLLI  300 (366)
T ss_pred             ccccce----eeccccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCccc-------CCHHHHHHHHH
Confidence            577773    33444 33899999984       2233445667789999999999998421       13334333333


Q ss_pred             HHHHh-CCCCCCCcEEEEeecCCccccccc-CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         228 DSICN-SKWFMDTSIILFLNKNDLFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       228 ~~~~~-~~~~~~~piilv~NK~Dl~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      .++=. ...+.+.|.++|+||+|++++.-. .+++..++.      +-+++++||+.++++.++.+.+.+
T Consensus       301 ~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq------~~~V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  301 EELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQ------NPHVVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             HHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcC------CCcEEEeeeccccchHHHHHHHhh
Confidence            33311 345678899999999999643111 134443332      226899999999999998887764

>CHL00071 tufA elongation factor Tu

Probab=99.00  E-value=2.2e-09  Score=101.26  Aligned_cols=109  Identities=16%  Similarity=0.191  Sum_probs=69.5

Q ss_pred             EEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc-E
Q psy8318         163 ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS-I  241 (313)
Q Consensus       163 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p-i  241 (313)
                      ...++.++.++.+.||+|++.+.+....-...+|++++|+|..+           .-.....+.+..+..    .+.| +
T Consensus        67 ~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~-----------g~~~qt~~~~~~~~~----~g~~~i  131 (409)
T CHL00071         67 HVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD-----------GPMPQTKEHILLAKQ----VGVPNI  131 (409)
T ss_pred             EEEEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----cCCCEE
Confidence            34455577889999999988765555555678999999999885           112333344433322    2467 7


Q ss_pred             EEEeecCCccccccc----CCcccccCcCCC-CCCCeEEEEeecccCcCH
Q psy8318         242 ILFLNKNDLFQEKIT----KSPLTVCFPEYT-DQKEIYTHFTCATDTSNI  286 (313)
Q Consensus       242 ilv~NK~Dl~~~k~~----~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v  286 (313)
                      +++.||+|+......    ..++...+..+. ....+.+.++||.+|.|+
T Consensus       132 IvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        132 VVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             EEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence            789999998642211    123444443331 122478899999999864

>PLN03126 Elongation factor Tu; Provisional

Probab=98.98  E-value=1.7e-09  Score=103.34  Aligned_cols=109  Identities=15%  Similarity=0.191  Sum_probs=68.7

Q ss_pred             EEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc-E
Q psy8318         163 ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS-I  241 (313)
Q Consensus       163 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p-i  241 (313)
                      ...++.++.++.++|++|++.+-+.-..-...+|++++|+|..+           .-.....+.+..+..    .++| +
T Consensus       136 ~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~-----------G~~~qt~e~~~~~~~----~gi~~i  200 (478)
T PLN03126        136 TVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD-----------GPMPQTKEHILLAKQ----VGVPNM  200 (478)
T ss_pred             EEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----cCCCeE
Confidence            34455678899999999998776544445677899999999886           112233344433322    2467 7


Q ss_pred             EEEeecCCccccc-c---cCCcccccCcCCC-CCCCeEEEEeecccCcCH
Q psy8318         242 ILFLNKNDLFQEK-I---TKSPLTVCFPEYT-DQKEIYTHFTCATDTSNI  286 (313)
Q Consensus       242 ilv~NK~Dl~~~k-~---~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v  286 (313)
                      +++.||+|+.... .   ...++...+..+. ....+.++++||.+|.|+
T Consensus       201 IvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~  250 (478)
T PLN03126        201 VVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALEA  250 (478)
T ss_pred             EEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccc
Confidence            8899999986421 1   1123333333221 224578899999998654

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.98  E-value=1.7e-09  Score=91.91  Aligned_cols=112  Identities=12%  Similarity=0.051  Sum_probs=61.4

Q ss_pred             ceeeeEecCCCcccccccccc-----ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEe
Q psy8318         171 LHFKMFDVGGQRSERKKWIHC-----FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFL  245 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~-----~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~  245 (313)
                      ..+.+||++|.......-..|     +.+++.+++|.| .             ++.+....+...+..   .+.|+++|+
T Consensus        52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~-~-------------~~~~~d~~~~~~l~~---~~~~~ilV~  114 (197)
T cd04104          52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS-T-------------RFSSNDVKLAKAIQC---MGKKFYFVR  114 (197)
T ss_pred             CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC-C-------------CCCHHHHHHHHHHHH---hCCCEEEEE
Confidence            468999999975322211222     677888888743 2             222233323333332   257999999


Q ss_pred             ecCCccc--ccccC------Cc----c----cccCcCCCCCCCeEEEEeecc--cCcCHHHHHHHHHHHHHHh
Q psy8318         246 NKNDLFQ--EKITK------SP----L----TVCFPEYTDQKEIYTHFTCAT--DTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       246 NK~Dl~~--~k~~~------~~----l----~~~f~~~~~~~~~~~~~tSA~--~~~~v~~~f~~i~~~i~~~  300 (313)
                      ||+|+..  +....      ..    +    ...++.. .-..-.++.+|+.  .+.++..+.+.+...+-+.
T Consensus       115 nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~-~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         115 TKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA-GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH  186 (197)
T ss_pred             ecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc-CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence            9999742  11100      01    1    1111111 1122367889998  4678877777777766543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>KOG0462|consensus

Probab=98.98  E-value=4.3e-09  Score=98.60  Aligned_cols=110  Identities=15%  Similarity=0.153  Sum_probs=82.0

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.++++||+||..|+.--...+.-|+++|+|||.+.           --...+..-|...++    .+..+|.|+||+|
T Consensus       124 ~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~q-----------GvqAQT~anf~lAfe----~~L~iIpVlNKID  188 (650)
T KOG0462|consen  124 SYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQ-----------GVQAQTVANFYLAFE----AGLAIIPVLNKID  188 (650)
T ss_pred             ceEEEeecCCCcccccceehehhhhcCceEEEEEcCc-----------CchHHHHHHHHHHHH----cCCeEEEeeeccC
Confidence            3899999999999998877888899999999999996           333333333333333    3578999999999


Q ss_pred             cccccccC--CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         250 LFQEKITK--SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       250 l~~~k~~~--~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      ++.+....  .++.+.|..    ..-.+..+||++|.|+.++++.|.+.+-
T Consensus       189 lp~adpe~V~~q~~~lF~~----~~~~~i~vSAK~G~~v~~lL~AII~rVP  235 (650)
T KOG0462|consen  189 LPSADPERVENQLFELFDI----PPAEVIYVSAKTGLNVEELLEAIIRRVP  235 (650)
T ss_pred             CCCCCHHHHHHHHHHHhcC----CccceEEEEeccCccHHHHHHHHHhhCC
Confidence            98864322  244444432    2336889999999999999999988764

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.96  E-value=9.2e-10  Score=109.39  Aligned_cols=116  Identities=12%  Similarity=0.065  Sum_probs=69.1

Q ss_pred             ecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318         158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM  237 (313)
Q Consensus       158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~  237 (313)
                      |+-.....++.++.++.++||+|++.+.+.-..-...+|++++|+|..+--        .....+...+...+      .
T Consensus        91 Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~--------~~~t~e~~~~~~~~------~  156 (632)
T PRK05506         91 TIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGV--------LTQTRRHSFIASLL------G  156 (632)
T ss_pred             CceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCc--------cccCHHHHHHHHHh------C
Confidence            333444556667889999999999876544444567899999999987510        11112222222221      2


Q ss_pred             CCcEEEEeecCCcccc-c--cc--CCcccccCcCCCCCCCeEEEEeecccCcCHHH
Q psy8318         238 DTSIILFLNKNDLFQE-K--IT--KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQF  288 (313)
Q Consensus       238 ~~piilv~NK~Dl~~~-k--~~--~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~  288 (313)
                      ..|++|++||+|+... +  ..  ..++.+.+..+ .-....++++||++|.|+.+
T Consensus       157 ~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~-~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        157 IRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKL-GLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             CCeEEEEEEecccccchhHHHHHHHHHHHHHHHHc-CCCCccEEEEecccCCCccc
Confidence            3588999999998631 1  00  11222211112 11235688999999999874

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.96  E-value=4.2e-09  Score=105.63  Aligned_cols=82  Identities=15%  Similarity=0.107  Sum_probs=61.6

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .-|+-.....+.+++.++.+|||+|+..+...+...++.+|++|+|+|.++          ... .+....+..+..   
T Consensus        60 giti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~----------g~~-~~~~~~~~~~~~---  125 (689)
T TIGR00484        60 GITITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVG----------GVQ-PQSETVWRQANR---  125 (689)
T ss_pred             CCCEecceEEEEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCC----------CCC-hhHHHHHHHHHH---
Confidence            344445566778889999999999999888888899999999999999886          111 223344443322   


Q ss_pred             CCCCcEEEEeecCCccc
Q psy8318         236 FMDTSIILFLNKNDLFQ  252 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~  252 (313)
                       .+.|+++++||+|+..
T Consensus       126 -~~~p~ivviNK~D~~~  141 (689)
T TIGR00484       126 -YEVPRIAFVNKMDKTG  141 (689)
T ss_pred             -cCCCEEEEEECCCCCC
Confidence             3579999999999875

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.96  E-value=2.3e-09  Score=85.28  Aligned_cols=99  Identities=17%  Similarity=0.183  Sum_probs=61.3

Q ss_pred             eEecCCCcccccccccc----ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         175 MFDVGGQRSERKKWIHC----FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       175 i~D~~Gq~~~r~~w~~~----~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      ++||+|---+.+.+.+.    -.+|+.|++|.|.++-....     +..       |..     .+ ++|+|=|.||+|+
T Consensus        40 ~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~-----pP~-------fa~-----~f-~~pvIGVITK~Dl  101 (143)
T PF10662_consen   40 TIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVF-----PPG-------FAS-----MF-NKPVIGVITKIDL  101 (143)
T ss_pred             EEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccC-----Cch-------hhc-----cc-CCCEEEEEECccC
Confidence            47999976555444333    36899999999999722111     111       111     12 4799999999999


Q ss_pred             ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHH
Q psy8318         251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVT  294 (313)
Q Consensus       251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~  294 (313)
                      ...........+.+... .-.  .++.+||.+|+||+++.++|.
T Consensus       102 ~~~~~~i~~a~~~L~~a-G~~--~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  102 PSDDANIERAKKWLKNA-GVK--EIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             ccchhhHHHHHHHHHHc-CCC--CeEEEECCCCcCHHHHHHHHh
Confidence            82211111222222211 112  359999999999999998875

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.95  E-value=1.3e-08  Score=94.23  Aligned_cols=123  Identities=18%  Similarity=0.256  Sum_probs=82.5

Q ss_pred             ecceeEEEEEecCceeeeEecCCCccccccccc-----------cccCCcEEEEEEecCCcccccccccccccHHHHHHH
Q psy8318         158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIH-----------CFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKL  226 (313)
Q Consensus       158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~-----------~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~  226 (313)
                      |.......+++++.++.+.||+|-++-.+....           -.+.++.|++|+|.++           .-.++-...
T Consensus       213 TRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~-----------~~~~qD~~i  281 (444)
T COG1160         213 TRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATE-----------GISEQDLRI  281 (444)
T ss_pred             cccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCC-----------CchHHHHHH
Confidence            334455677888999999999998765444431           2456899999999996           222223333


Q ss_pred             HHHHHhCCCCCCCcEEEEeecCCccccc-ccC----CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         227 FDSICNSKWFMDTSIILFLNKNDLFQEK-ITK----SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       227 ~~~~~~~~~~~~~piilv~NK~Dl~~~k-~~~----~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      ...+.+    .+.++++++||.|+.++. ...    ..+...|+-.   .....+++||++|.++..+|+.+.+...
T Consensus       282 a~~i~~----~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l---~~a~i~~iSA~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         282 AGLIEE----AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFL---DFAPIVFISALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             HHHHHH----cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccc---cCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence            333333    467999999999986641 111    2333333322   3357899999999999999999887543

>PRK00049 elongation factor Tu; Reviewed

Probab=98.95  E-value=8.2e-09  Score=96.98  Aligned_cols=108  Identities=15%  Similarity=0.205  Sum_probs=66.4

Q ss_pred             EEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318         163 ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII  242 (313)
Q Consensus       163 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii  242 (313)
                      ...++.++..+.+.||+|++.+.+.-..-...+|++++|+|..+           .-.......+..+..    .+.|.+
T Consensus        67 ~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~-----------g~~~qt~~~~~~~~~----~g~p~i  131 (396)
T PRK00049         67 HVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD-----------GPMPQTREHILLARQ----VGVPYI  131 (396)
T ss_pred             EEEEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC-----------CCchHHHHHHHHHHH----cCCCEE
Confidence            33445567789999999997665544455678999999999875           111223333433322    246865


Q ss_pred             -EEeecCCcccc-cc---cCCcccccCcCCC-CCCCeEEEEeecccCcC
Q psy8318         243 -LFLNKNDLFQE-KI---TKSPLTVCFPEYT-DQKEIYTHFTCATDTSN  285 (313)
Q Consensus       243 -lv~NK~Dl~~~-k~---~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~  285 (313)
                       ++.||+|+..+ ..   ...++...+..+. ....+.+.++||.+|.+
T Consensus       132 iVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~  180 (396)
T PRK00049        132 VVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALE  180 (396)
T ss_pred             EEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccC
Confidence             68999998632 11   1123444443321 12356788999998764

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=98.93  E-value=1.2e-08  Score=86.51  Aligned_cols=129  Identities=9%  Similarity=0.145  Sum_probs=74.9

Q ss_pred             ecceeEEEEEecCceeeeEecCCCcccc-----------ccccccccCCcEEEEEEecCCcccccccccccccHHHHHHH
Q psy8318         158 TTGIIETHFTFKDLHFKMFDVGGQRSER-----------KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKL  226 (313)
Q Consensus       158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r-----------~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~  226 (313)
                      |..+......+++..+.++||+|-....           +.+..+..+++++|||+++..+         ...-.++++.
T Consensus        36 T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~---------t~~d~~~l~~  106 (196)
T cd01852          36 TKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRF---------TEEEEQAVET  106 (196)
T ss_pred             ccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCc---------CHHHHHHHHH
Confidence            3444445556678899999999954321           1122235789999999998864         2344555666


Q ss_pred             HHHHHhCCCCCCCcEEEEeecCCccccc-cc------CCcccccCcCCCCCCCeEEEE-e--ecccCcCHHHHHHHHHHH
Q psy8318         227 FDSICNSKWFMDTSIILFLNKNDLFQEK-IT------KSPLTVCFPEYTDQKEIYTHF-T--CATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       227 ~~~~~~~~~~~~~piilv~NK~Dl~~~k-~~------~~~l~~~f~~~~~~~~~~~~~-t--SA~~~~~v~~~f~~i~~~  296 (313)
                      +.+++....  -.++++++|+.|..... +.      ...+......+ ..+ .+.+. .  ++..+.++.++++.|.+.
T Consensus       107 l~~~fg~~~--~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c-~~r-~~~f~~~~~~~~~~~q~~~Ll~~i~~~  182 (196)
T cd01852         107 LQELFGEKV--LDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKC-GGR-YVAFNNKAKGEEQEQQVKELLAKVESM  182 (196)
T ss_pred             HHHHhChHh--HhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHh-CCe-EEEEeCCCCcchhHHHHHHHHHHHHHH
Confidence            666554322  14788999999965421 00      01122222211 111 11121 1  356778899999998887


Q ss_pred             HHH
Q psy8318         297 IIK  299 (313)
Q Consensus       297 i~~  299 (313)
                      +..
T Consensus       183 ~~~  185 (196)
T cd01852         183 VKE  185 (196)
T ss_pred             HHh
Confidence            765

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK09866 hypothetical protein; Provisional

Probab=98.92  E-value=8.4e-10  Score=106.21  Aligned_cols=113  Identities=6%  Similarity=0.016  Sum_probs=67.4

Q ss_pred             CceeeeEecCCCccc-cc----cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEE
Q psy8318         170 DLHFKMFDVGGQRSE-RK----KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILF  244 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~-r~----~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv  244 (313)
                      ...+.|.||||-..- .+    .-...+.++|+|+||+|...          .....+ ....+.+ .. ...+.|++++
T Consensus       229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~----------~~s~~D-eeIlk~L-kk-~~K~~PVILV  295 (741)
T PRK09866        229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQ----------LKSISD-EEVREAI-LA-VGQSVPLYVL  295 (741)
T ss_pred             cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCC----------CCChhH-HHHHHHH-Hh-cCCCCCEEEE
Confidence            468899999996442 11    22335789999999999875          111111 1223333 22 1113599999


Q ss_pred             eecCCccccc-ccCCcccccCcCC--C-CCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         245 LNKNDLFQEK-ITKSPLTVCFPEY--T-DQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       245 ~NK~Dl~~~k-~~~~~l~~~f~~~--~-~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      .||+|..++. .....+..+...+  . ....-.++++||+.|.|+..+.+.|..
T Consensus       296 VNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        296 VNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             EEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            9999975311 0112222221111  0 112236899999999999999988776

>KOG1423|consensus

Probab=98.92  E-value=5.5e-09  Score=91.60  Aligned_cols=118  Identities=14%  Similarity=0.151  Sum_probs=71.2

Q ss_pred             EEecCceeeeEecCCCccccccc------------cccccCCcEEEEEEecCCcccccccccccccH-HHHHHHHHHHHh
Q psy8318         166 FTFKDLHFKMFDVGGQRSERKKW------------IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRM-IESMKLFDSICN  232 (313)
Q Consensus       166 ~~~~~~~~~i~D~~Gq~~~r~~w------------~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l-~e~~~~~~~~~~  232 (313)
                      ++-+..++.|+||+|--.-....            .+....||+|+.|+|.++-         .+.+ ...+..++..  
T Consensus       115 ~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~t---------r~~l~p~vl~~l~~y--  183 (379)
T KOG1423|consen  115 ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASAT---------RTPLHPRVLHMLEEY--  183 (379)
T ss_pred             EecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCC---------cCccChHHHHHHHHH--
Confidence            34478999999999943211111            1124679999999999961         1111 1122333333  


Q ss_pred             CCCCCCCcEEEEeecCCcccccc---------cCCccc-------ccCcCCC------CCCCe----EEEEeecccCcCH
Q psy8318         233 SKWFMDTSIILFLNKNDLFQEKI---------TKSPLT-------VCFPEYT------DQKEI----YTHFTCATDTSNI  286 (313)
Q Consensus       233 ~~~~~~~piilv~NK~Dl~~~k~---------~~~~l~-------~~f~~~~------~~~~~----~~~~tSA~~~~~v  286 (313)
                          .+.|-+|+.||.|....+.         ....+.       +.|.+..      ...+|    .+|++||+.|+||
T Consensus       184 ----s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~Gi  259 (379)
T KOG1423|consen  184 ----SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGI  259 (379)
T ss_pred             ----hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCH
Confidence                4578899999999765432         112222       2222221      00122    4789999999999


Q ss_pred             HHHHHHHHHHHH
Q psy8318         287 QFVFDAVTDVII  298 (313)
Q Consensus       287 ~~~f~~i~~~i~  298 (313)
                      +++-+|+..+..
T Consensus       260 kdlkqyLmsqa~  271 (379)
T KOG1423|consen  260 KDLKQYLMSQAP  271 (379)
T ss_pred             HHHHHHHHhcCC
Confidence            999999877643

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=98.92  E-value=6.3e-09  Score=80.49  Aligned_cols=67  Identities=24%  Similarity=0.449  Sum_probs=43.7

Q ss_pred             EEEEecCceeeeEecCCCcccc---------ccccccccCCcEEEEEEecCCcccccccccccccHHH-HHHHHHHHHhC
Q psy8318         164 THFTFKDLHFKMFDVGGQRSER---------KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIE-SMKLFDSICNS  233 (313)
Q Consensus       164 ~~~~~~~~~~~i~D~~Gq~~~r---------~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e-~~~~~~~~~~~  233 (313)
                      ..+.+.+..+.++||+|-..-.         ......+..+++++||+|.++            ...+ ...+++.+ + 
T Consensus        40 ~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~------------~~~~~~~~~~~~l-~-  105 (116)
T PF01926_consen   40 GQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASN------------PITEDDKNILREL-K-  105 (116)
T ss_dssp             EEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTS------------HSHHHHHHHHHHH-H-
T ss_pred             eeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCC------------CCCHHHHHHHHHH-h-
Confidence            4556678888999999963211         112333478999999999554            2222 33344444 2 


Q ss_pred             CCCCCCcEEEEeec
Q psy8318         234 KWFMDTSIILFLNK  247 (313)
Q Consensus       234 ~~~~~~piilv~NK  247 (313)
                         .+.|+++|+||
T Consensus       106 ---~~~~~i~v~NK  116 (116)
T PF01926_consen  106 ---NKKPIILVLNK  116 (116)
T ss_dssp             ---TTSEEEEEEES
T ss_pred             ---cCCCEEEEEcC
Confidence               56899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01850 CDC_Septin CDC/Septin

Probab=98.92  E-value=1.4e-08  Score=90.68  Aligned_cols=66  Identities=18%  Similarity=0.315  Sum_probs=43.7

Q ss_pred             ceeeeEecCCC--------------------------cccccccccccc--CCcEEEEEEecCCcccccccccccccHHH
Q psy8318         171 LHFKMFDVGGQ--------------------------RSERKKWIHCFE--GVTAIIFCVALSGYDSVLAEDEEMNRMIE  222 (313)
Q Consensus       171 ~~~~i~D~~Gq--------------------------~~~r~~w~~~~~--~~~~iifv~dls~~d~~~~e~~~~~~l~e  222 (313)
                      +++++|||+|-                          +..+..+..++.  .+++++|+++.+.           ..+..
T Consensus        63 ~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-----------~~l~~  131 (276)
T cd01850          63 LKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-----------HGLKP  131 (276)
T ss_pred             EEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-----------CCCCH
Confidence            67999999993                          222223334554  4788999998774           23322


Q ss_pred             H-HHHHHHHHhCCCCCCCcEEEEeecCCccc
Q psy8318         223 S-MKLFDSICNSKWFMDTSIILFLNKNDLFQ  252 (313)
Q Consensus       223 ~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~  252 (313)
                      . .+.++.+..     ++|+++|+||+|+..
T Consensus       132 ~D~~~lk~l~~-----~v~vi~VinK~D~l~  157 (276)
T cd01850         132 LDIEFMKRLSK-----RVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHhc-----cCCEEEEEECCCcCC
Confidence            2 555666532     489999999999854

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.91  E-value=6.4e-09  Score=92.65  Aligned_cols=134  Identities=15%  Similarity=0.202  Sum_probs=85.9

Q ss_pred             eeeecceeEEEEEecCceeeeEecCCCc-------cccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHH
Q psy8318         155 RVKTTGIIETHFTFKDLHFKMFDVGGQR-------SERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF  227 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~-------~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~  227 (313)
                      -.|..|+...   ..+.+|.+-|++|--       ...-....+++.|..+++|+|++..|.       .+-.++-..+.
T Consensus       194 L~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~-------~dp~~~~~~i~  263 (369)
T COG0536         194 LVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDG-------RDPIEDYQTIR  263 (369)
T ss_pred             ccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccC-------CCHHHHHHHHH
Confidence            3677887654   356779999999842       122345667889999999999998432       12233333333


Q ss_pred             HHHHh-CCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEE-eecccCcCHHHHHHHHHHHHHHhh
Q psy8318         228 DSICN-SKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHF-TCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       228 ~~~~~-~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~-tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      .++-. ++.+.+.|.+|++||+|+....-....+.+.+.+.   ..+.... +||.+++|++++...+.+.+....
T Consensus       264 ~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~---~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         264 NELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA---LGWEVFYLISALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             HHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh---cCCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence            33332 35667899999999999543222222333333321   2222111 999999999999999998887664

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.90  E-value=1.3e-08  Score=92.46  Aligned_cols=55  Identities=15%  Similarity=0.125  Sum_probs=36.3

Q ss_pred             CCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHH-HHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFD-AVTDVI  297 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~-~i~~~i  297 (313)
                      ...|+++++||.|+....-....+..   .+   ....++.+||+.+.++.++.+ .+.+.+
T Consensus       213 t~KPvI~VlNK~Dl~~~~~~~~~l~~---~~---~~~~iI~iSA~~e~~L~~L~~~~i~~~l  268 (318)
T cd01899         213 RSKPMVIAANKADIPDAENNISKLRL---KY---PDEIVVPTSAEAELALRRAAKQGLIKYD  268 (318)
T ss_pred             cCCcEEEEEEHHHccChHHHHHHHHh---hC---CCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence            45799999999997532110111111   11   234689999999999999887 577665

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG1490|consensus

Probab=98.88  E-value=1.3e-09  Score=101.09  Aligned_cols=132  Identities=20%  Similarity=0.294  Sum_probs=96.1

Q ss_pred             eecceeEEEEEecCceeeeEecCCCc---ccccccccc-----c-cCCcEEEEEEecCCcccccccccccccHHHHHHHH
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQR---SERKKWIHC-----F-EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF  227 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~---~~r~~w~~~-----~-~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~  227 (313)
                      +|.++....++++-..|++.||+|--   .+.+.....     + .=-.+|+|+.|+|+        .+-.+..+..++|
T Consensus       201 TTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe--------~CGySva~QvkLf  272 (620)
T KOG1490|consen  201 TTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSE--------MCGYSVAAQVKLY  272 (620)
T ss_pred             ccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechh--------hhCCCHHHHHHHH
Confidence            56777778888888999999999942   122111111     1 11368999999997        5578999999999


Q ss_pred             HHHHhCCCCCCCcEEEEeecCCcccc-cccCC--cccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         228 DSICNSKWFMDTSIILFLNKNDLFQE-KITKS--PLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       228 ~~~~~~~~~~~~piilv~NK~Dl~~~-k~~~~--~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      .++  .+.|.+.|.|+|+||+|+..- .+...  ++.+...   ...++.+..+|..+.+||.+|-...++.++...
T Consensus       273 hsI--KpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~---~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~R  344 (620)
T KOG1490|consen  273 HSI--KPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTII---DDGNVKVVQTSCVQEEGVMDVRTTACEALLAAR  344 (620)
T ss_pred             HHh--HHHhcCCceEEEeecccccCccccCHHHHHHHHHHH---hccCceEEEecccchhceeeHHHHHHHHHHHHH
Confidence            998  478999999999999997642 22221  2222222   234578999999999999999999998888654

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.84  E-value=1.1e-08  Score=102.87  Aligned_cols=72  Identities=15%  Similarity=0.190  Sum_probs=52.9

Q ss_pred             EEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEe
Q psy8318         166 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFL  245 (313)
Q Consensus       166 ~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~  245 (313)
                      ++.++..+.+|||+|+..+...-...++.+|++|+|+|..+-           -..++...+....+    .+.|+++++
T Consensus        81 ~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g-----------~~~~t~~~~~~~~~----~~~p~ivvi  145 (720)
T TIGR00490        81 YEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEG-----------VMPQTETVLRQALK----ENVKPVLFI  145 (720)
T ss_pred             ecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCC-----------CCccHHHHHHHHHH----cCCCEEEEE
Confidence            455678999999999988877777788999999999998751           11223334444322    346888999


Q ss_pred             ecCCccc
Q psy8318         246 NKNDLFQ  252 (313)
Q Consensus       246 NK~Dl~~  252 (313)
                      ||+|...
T Consensus       146 NKiD~~~  152 (720)
T TIGR00490       146 NKVDRLI  152 (720)
T ss_pred             EChhccc
Confidence            9999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PLN03127 Elongation factor Tu; Provisional

Probab=98.83  E-value=3.7e-08  Score=93.72  Aligned_cols=125  Identities=19%  Similarity=0.193  Sum_probs=70.8

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      -|+......++.++.++.+.||+|++.+-+.-..-...+|++++|+|..+-           -..+..+.+..+..    
T Consensus       110 iTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g-----------~~~qt~e~l~~~~~----  174 (447)
T PLN03127        110 ITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-----------PMPQTKEHILLARQ----  174 (447)
T ss_pred             ceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCC-----------CchhHHHHHHHHHH----
Confidence            344444445556778899999999976544333334569999999998751           11223333333222    


Q ss_pred             CCCc-EEEEeecCCccccccc----CCcccccCcCCC-CCCCeEEEEeecc---cCcC-------HHHHHHHHHHH
Q psy8318         237 MDTS-IILFLNKNDLFQEKIT----KSPLTVCFPEYT-DQKEIYTHFTCAT---DTSN-------IQFVFDAVTDV  296 (313)
Q Consensus       237 ~~~p-iilv~NK~Dl~~~k~~----~~~l~~~f~~~~-~~~~~~~~~tSA~---~~~~-------v~~~f~~i~~~  296 (313)
                      .++| ++++.||+|+..+...    ..++.+.+..+. ....+.++++||.   +|.|       +..+++.+...
T Consensus       175 ~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~  250 (447)
T PLN03127        175 VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY  250 (447)
T ss_pred             cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence            2468 5788999998642111    112333332211 1234667777765   5555       55666665544

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.79  E-value=3.7e-08  Score=95.24  Aligned_cols=117  Identities=17%  Similarity=0.142  Sum_probs=83.1

Q ss_pred             ecceeEEEEEecCceeeeEecCCCcccc------ccccccc--cCCcEEEEEEecCCcccccccccccccHHHHHHHHHH
Q psy8318         158 TTGIIETHFTFKDLHFKMFDVGGQRSER------KKWIHCF--EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDS  229 (313)
Q Consensus       158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r------~~w~~~~--~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~  229 (313)
                      |+--.+..+.+++..+++.|.+|.-+..      +.-.+|.  .+.|++|-|+|.++             ++.++.+.-+
T Consensus        37 TVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtn-------------LeRnLyltlQ  103 (653)
T COG0370          37 TVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATN-------------LERNLYLTLQ  103 (653)
T ss_pred             eEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccch-------------HHHHHHHHHH
Confidence            3344555777788899999999965433      2233343  45799999999886             4556666556


Q ss_pred             HHhCCCCCCCcEEEEeecCCccccc---ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         230 ICNSKWFMDTSIILFLNKNDLFQEK---ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       230 ~~~~~~~~~~piilv~NK~Dl~~~k---~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      +++    -+.|+++++|+.|..+++   +..+.+++.       .++++.+|+|+.|.|++++.+.+.+...
T Consensus       104 LlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~-------LGvPVv~tvA~~g~G~~~l~~~i~~~~~  164 (653)
T COG0370         104 LLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKL-------LGVPVVPTVAKRGEGLEELKRAIIELAE  164 (653)
T ss_pred             HHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHH-------hCCCEEEEEeecCCCHHHHHHHHHHhcc
Confidence            654    367999999999987653   222334332       5788999999999999999888876443

>KOG3886|consensus

Probab=98.77  E-value=1e-08  Score=86.47  Aligned_cols=84  Identities=23%  Similarity=0.413  Sum_probs=59.7

Q ss_pred             eecceeEEEEEe-cCceeeeEecCCCcccc-----ccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHH-
Q psy8318         157 KTTGIIETHFTF-KDLHFKMFDVGGQRSER-----KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDS-  229 (313)
Q Consensus       157 ~T~g~~~~~~~~-~~~~~~i~D~~Gq~~~r-----~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~-  229 (313)
                      +|+.+....+.+ ++.-+.+||.|||+.+-     ..-.+-|++++++|||+|++.           +.++.-+..++. 
T Consensus        38 ~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves-----------~e~~~D~~~yqk~  106 (295)
T KOG3886|consen   38 ATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVES-----------REMEKDFHYYQKC  106 (295)
T ss_pred             CcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccc-----------hhhhhhHHHHHHH
Confidence            455555555555 66899999999998533     344567899999999999995           555555555554 


Q ss_pred             ---HHhCCCCCCCcEEEEeecCCcccc
Q psy8318         230 ---ICNSKWFMDTSIILFLNKNDLFQE  253 (313)
Q Consensus       230 ---~~~~~~~~~~piilv~NK~Dl~~~  253 (313)
                         ++++  .+...+..+..|+|+...
T Consensus       107 Le~ll~~--SP~AkiF~l~hKmDLv~~  131 (295)
T KOG3886|consen  107 LEALLQN--SPEAKIFCLLHKMDLVQE  131 (295)
T ss_pred             HHHHHhc--CCcceEEEEEeechhccc
Confidence               3333  345778889999998754

>KOG1707|consensus

Probab=98.76  E-value=6.9e-09  Score=97.93  Aligned_cols=113  Identities=15%  Similarity=0.168  Sum_probs=74.3

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC--CCCCcEEEEeecC
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW--FMDTSIILFLNKN  248 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~--~~~~piilv~NK~  248 (313)
                      +...+.|++-....+-.-.+-++.+++|..|++.++          ..+++.....|--++....  ..++|+||||||+
T Consensus        56 vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~----------~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~  125 (625)
T KOG1707|consen   56 VPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDD----------ESTVDRISTKWLPLIRQLFGDYHETPVILVGNKS  125 (625)
T ss_pred             CceEEEecccccchhHHHHHHHhhcCEEEEEEecCC----------hHHhhhhhhhhhhhhhcccCCCccCCEEEEeecc
Confidence            335567887544433333566889999999999887          4555554444444444322  2579999999999


Q ss_pred             Cccccccc-----CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         249 DLFQEKIT-----KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       249 Dl~~~k~~-----~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      |.......     ..++...|++.     =.+++|||++-.|+.++|....+.++
T Consensus       126 d~~~~~~~s~e~~~~pim~~f~Ei-----EtciecSA~~~~n~~e~fYyaqKaVi  175 (625)
T KOG1707|consen  126 DNGDNENNSDEVNTLPIMIAFAEI-----ETCIECSALTLANVSELFYYAQKAVI  175 (625)
T ss_pred             CCccccccchhHHHHHHHHHhHHH-----HHHHhhhhhhhhhhHhhhhhhhheee
Confidence            97653222     12333444333     14788999999999999998877665

>TIGR00101 ureG urease accessory protein UreG

Probab=98.76  E-value=1.5e-08  Score=86.24  Aligned_cols=101  Identities=17%  Similarity=0.126  Sum_probs=59.5

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE--EEEeecC
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI--ILFLNKN  248 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi--ilv~NK~  248 (313)
                      ....+.++.|..-....++   .-++.+|.|+|..++++..         ..    .        ..+..+  ++++||+
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~---------~~----~--------~~qi~~ad~~~~~k~  147 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIP---------RK----G--------GPGITRSDLLVINKI  147 (199)
T ss_pred             CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhh---------hh----h--------HhHhhhccEEEEEhh
Confidence            4455677777322222222   1257799999999854311         00    0        012233  7889999


Q ss_pred             Cccccccc--CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         249 DLFQEKIT--KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       249 Dl~~~k~~--~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      |+.+. ..  ...+.+....+  +....+++|||++|+|+.++|+|+.+..+
T Consensus       148 d~~~~-~~~~~~~~~~~~~~~--~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       148 DLAPM-VGADLGVMERDAKKM--RGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             hcccc-ccccHHHHHHHHHHh--CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            98742 11  11111222222  13467899999999999999999987653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK12739 elongation factor G; Reviewed

Probab=98.75  E-value=4.9e-08  Score=98.05  Aligned_cols=83  Identities=13%  Similarity=0.063  Sum_probs=61.8

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .-|+-.....+.+++.++.++||+|+..+..-|...++.+|++|+|+|.++-          - -......+..+..   
T Consensus        58 giti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g----------~-~~qt~~i~~~~~~---  123 (691)
T PRK12739         58 GITITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSG----------V-EPQSETVWRQADK---  123 (691)
T ss_pred             CCCccceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCC----------C-CHHHHHHHHHHHH---
Confidence            3444555567788999999999999988888888899999999999998861          1 1222344444332   


Q ss_pred             CCCCcEEEEeecCCcccc
Q psy8318         236 FMDTSIILFLNKNDLFQE  253 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~  253 (313)
                       .+.|++++.||+|+..+
T Consensus       124 -~~~p~iv~iNK~D~~~~  140 (691)
T PRK12739        124 -YGVPRIVFVNKMDRIGA  140 (691)
T ss_pred             -cCCCEEEEEECCCCCCC
Confidence             35799999999998753

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.71  E-value=2.9e-08  Score=87.16  Aligned_cols=96  Identities=9%  Similarity=0.120  Sum_probs=67.2

Q ss_pred             ccccccccccccCCcEEEEEEecCCcccccccccccc-cHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcc
Q psy8318         182 RSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMN-RMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPL  260 (313)
Q Consensus       182 ~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~-~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l  260 (313)
                      ++++.+...+++++++++.|+|+++          +. ++.....|+..+ ..   .++|++||+||+|+..+.....+.
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~----------p~~s~~~l~r~l~~~-~~---~~i~~vIV~NK~DL~~~~~~~~~~   89 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVL----------PELSLNQLDRFLVVA-EA---QNIEPIIVLNKIDLLDDEDMEKEQ   89 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCC----------CCCCHHHHHHHHHHH-HH---CCCCEEEEEECcccCCCHHHHHHH
Confidence            4566777789999999999999997          34 444444444433 22   568999999999986432211122


Q ss_pred             cccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         261 TVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       261 ~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      .+.+    ...+..++++||++|+|+.++|+.+.+
T Consensus        90 ~~~~----~~~g~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        90 LDIY----RNIGYQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             HHHH----HHCCCeEEEEecCCchhHHHHHhhhcC
Confidence            2222    224567899999999999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.69  E-value=1.3e-07  Score=88.39  Aligned_cols=36  Identities=25%  Similarity=0.444  Sum_probs=26.5

Q ss_pred             ceeeeEecCCCc----cccc---cccccccCCcEEEEEEecCC
Q psy8318         171 LHFKMFDVGGQR----SERK---KWIHCFEGVTAIIFCVALSG  206 (313)
Q Consensus       171 ~~~~i~D~~Gq~----~~r~---~w~~~~~~~~~iifv~dls~  206 (313)
                      ..+++||++|..    ..+.   .....+++|+++++|+|.+.
T Consensus        72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~  114 (396)
T PRK09602         72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG  114 (396)
T ss_pred             eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence            579999999942    2222   33334889999999999973

>COG2262 HflX GTPases [General function prediction only]

Probab=98.68  E-value=4e-07  Score=83.28  Aligned_cols=117  Identities=14%  Similarity=0.180  Sum_probs=74.3

Q ss_pred             EEEEEec-CceeeeEecCCCccccccccc-c-------ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC
Q psy8318         163 ETHFTFK-DLHFKMFDVGGQRSERKKWIH-C-------FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS  233 (313)
Q Consensus       163 ~~~~~~~-~~~~~i~D~~Gq~~~r~~w~~-~-------~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~  233 (313)
                      ...+... +..+-+-||-|=-..-.-|.- .       -..+|.++.|+|.|+          + ...+-.+.-..++..
T Consensus       231 tR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSd----------p-~~~~~~~~v~~vL~e  299 (411)
T COG2262         231 TRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASD----------P-EILEKLEAVEDVLAE  299 (411)
T ss_pred             eeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCC----------h-hHHHHHHHHHHHHHH
Confidence            3344444 577788888884222111111 1       245899999999998          3 444444444455554


Q ss_pred             CCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         234 KWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       234 ~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      -.....|+|+++||+|..........+..    .   .+ ...++||++|.|++.+.+.|.+.+.
T Consensus       300 l~~~~~p~i~v~NKiD~~~~~~~~~~~~~----~---~~-~~v~iSA~~~~gl~~L~~~i~~~l~  356 (411)
T COG2262         300 IGADEIPIILVLNKIDLLEDEEILAELER----G---SP-NPVFISAKTGEGLDLLRERIIELLS  356 (411)
T ss_pred             cCCCCCCEEEEEecccccCchhhhhhhhh----c---CC-CeEEEEeccCcCHHHHHHHHHHHhh
Confidence            44566999999999996543221112211    1   12 4789999999999999998888775

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=6.2e-08  Score=88.52  Aligned_cols=127  Identities=17%  Similarity=0.107  Sum_probs=78.6

Q ss_pred             eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      |--|+.+....|+.....+++.|++|++.|-+.-..-...||+.|+|+|..+. +....-.......|..-+. ..    
T Consensus        69 rGvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~-efE~g~~~~gQtrEH~~La-~t----  142 (428)
T COG5256          69 RGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDG-EFEAGFGVGGQTREHAFLA-RT----  142 (428)
T ss_pred             cceEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCC-ccccccccCCchhHHHHHH-Hh----
Confidence            45666667777888888999999999988877777777889999999999862 1000000012222222222 22    


Q ss_pred             CCCCCcEEEEeecCCcccc---ccc--CCcccccCcCCC-CCCCeEEEEeecccCcCHHH
Q psy8318         235 WFMDTSIILFLNKNDLFQE---KIT--KSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQF  288 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~~---k~~--~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~  288 (313)
                       +.-..+|++.||+|...=   +..  ..++......+. ....+.+.++||..|+|+.+
T Consensus       143 -lGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         143 -LGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             -cCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence             123578999999998641   110  111222211111 22367899999999999854

>PRK00007 elongation factor G; Reviewed

Probab=98.66  E-value=1.1e-07  Score=95.55  Aligned_cols=81  Identities=16%  Similarity=0.126  Sum_probs=56.7

Q ss_pred             ecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318         158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM  237 (313)
Q Consensus       158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~  237 (313)
                      |+-.....+.+++..+.+.||+|+..+..--....+.+|++|+|+|.++           .-.......+..+..    .
T Consensus        62 ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~-----------g~~~qt~~~~~~~~~----~  126 (693)
T PRK00007         62 TITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVG-----------GVEPQSETVWRQADK----Y  126 (693)
T ss_pred             CEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCC-----------CcchhhHHHHHHHHH----c
Confidence            3333445677789999999999987665444445678999999999875           112333445555433    3


Q ss_pred             CCcEEEEeecCCcccc
Q psy8318         238 DTSIILFLNKNDLFQE  253 (313)
Q Consensus       238 ~~piilv~NK~Dl~~~  253 (313)
                      +.|++++.||+|+..+
T Consensus       127 ~~p~iv~vNK~D~~~~  142 (693)
T PRK00007        127 KVPRIAFVNKMDRTGA  142 (693)
T ss_pred             CCCEEEEEECCCCCCC
Confidence            5789999999998754

>KOG1191|consensus

Probab=98.65  E-value=6.8e-07  Score=83.25  Aligned_cols=129  Identities=18%  Similarity=0.227  Sum_probs=78.0

Q ss_pred             ceeEEEEEecCceeeeEecCCCccccccc---------cccccCCcEEEEEEec--CCcccccccccccccHHHHHHHHH
Q psy8318         160 GIIETHFTFKDLHFKMFDVGGQRSERKKW---------IHCFEGVTAIIFCVAL--SGYDSVLAEDEEMNRMIESMKLFD  228 (313)
Q Consensus       160 g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w---------~~~~~~~~~iifv~dl--s~~d~~~~e~~~~~~l~e~~~~~~  228 (313)
                      ...+..|++.++++.+.||+|-+..+..-         ..-.+.+|.|++|+|.  +++          .+-......++
T Consensus       305 Daiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t----------~sd~~i~~~l~  374 (531)
T KOG1191|consen  305 DAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDT----------ESDLKIARILE  374 (531)
T ss_pred             hhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccccc----------ccchHHHHHHH
Confidence            34556778899999999999987633221         1224679999999999  442          22222222222


Q ss_pred             HHHh-----CCCCCCCcEEEEeecCCcccc--cccCCcccccCcCCCCCCCeEEEE-eecccCcCHHHHHHHHHHHHHHh
Q psy8318         229 SICN-----SKWFMDTSIILFLNKNDLFQE--KITKSPLTVCFPEYTDQKEIYTHF-TCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       229 ~~~~-----~~~~~~~piilv~NK~Dl~~~--k~~~~~l~~~f~~~~~~~~~~~~~-tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ..-.     .+...+.|++++.||.|+...  .+...++. +.... ......++. +|++++++++.+...+...+...
T Consensus       375 ~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~-~~~~~-~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~  452 (531)
T KOG1191|consen  375 TEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV-YPSAE-GRSVFPIVVEVSCTTKEGCERLSTALLNIVERL  452 (531)
T ss_pred             HhccceEEEeccccccceEEEechhhccCccccccCCcee-ccccc-cCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence            2211     122245799999999998763  11221211 11111 112334444 99999999999998888877644

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.58  E-value=1.4e-07  Score=89.82  Aligned_cols=113  Identities=16%  Similarity=0.104  Sum_probs=71.9

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      ..+.+.|++|++.+-+-...-...+|++++|+|..+-.       ......+.+...+.+      .-.|+++++||+|+
T Consensus       117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~-------~~~qT~ehl~i~~~l------gi~~iIVvlNKiDl  183 (460)
T PTZ00327        117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESC-------PQPQTSEHLAAVEIM------KLKHIIILQNKIDL  183 (460)
T ss_pred             ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCc-------cchhhHHHHHHHHHc------CCCcEEEEEecccc
Confidence            46889999999877655455567899999999998510       011122222222211      22578999999998


Q ss_pred             cccccc---CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         251 FQEKIT---KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       251 ~~~k~~---~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ......   ..++.+.+..+ ......++++||++|+|+..+++.|.+.+
T Consensus       184 v~~~~~~~~~~ei~~~l~~~-~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        184 VKEAQAQDQYEEIRNFVKGT-IADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             cCHHHHHHHHHHHHHHHHhh-ccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence            642111   12333333222 12356789999999999999888887644

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.51  E-value=1e-06  Score=90.84  Aligned_cols=109  Identities=15%  Similarity=0.105  Sum_probs=72.0

Q ss_pred             eeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCccc
Q psy8318         173 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQ  252 (313)
Q Consensus       173 ~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  252 (313)
                      +.||||+||+.+..+....+..++++++|+|+++--        .....++...+.   .    .++|+++++||+|+..
T Consensus       528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi--------~~qT~e~I~~lk---~----~~iPiIVViNKiDL~~  592 (1049)
T PRK14845        528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGF--------KPQTIEAINILR---Q----YKTPFVVAANKIDLIP  592 (1049)
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccC--------CHhHHHHHHHHH---H----cCCCEEEEEECCCCcc
Confidence            899999999999887777888999999999988510        122222333222   1    2579999999999853


Q ss_pred             -ccccC----------------Ccc-------cccCcCCC-----------CCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         253 -EKITK----------------SPL-------TVCFPEYT-----------DQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       253 -~k~~~----------------~~l-------~~~f~~~~-----------~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                       .....                .++       ...+.+..           -...+.++++||++|+||.++..++...
T Consensus       593 ~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        593 GWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             ccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence             21110                000       00011110           0235688999999999999999888654

>KOG1145|consensus

Probab=98.50  E-value=1.2e-06  Score=82.60  Aligned_cols=121  Identities=14%  Similarity=0.129  Sum_probs=82.0

Q ss_pred             cceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCC
Q psy8318         159 TGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMD  238 (313)
Q Consensus       159 ~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~  238 (313)
                      +|-....++ .+.+++|.||+|+.-|..+...=-.-+|.|++||...|-        -..+..|+++.-       ...+
T Consensus       190 IGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDG--------VmpQT~EaIkhA-------k~A~  253 (683)
T KOG1145|consen  190 IGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDG--------VMPQTLEAIKHA-------KSAN  253 (683)
T ss_pred             eceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCC--------ccHhHHHHHHHH-------HhcC
Confidence            454444445 678999999999999988888777778999999998861        122223333222       2267


Q ss_pred             CcEEEEeecCCcccccccC--Ccccc---cCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         239 TSIILFLNKNDLFQEKITK--SPLTV---CFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       239 ~piilv~NK~Dl~~~k~~~--~~l~~---~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      .|+++..||+|.+++...+  .++..   ...++  .-...+.++||++|+|+..+-+.+.-..
T Consensus       254 VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~--GGdVQvipiSAl~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  254 VPIVVAINKIDKPGANPEKVKRELLSQGIVVEDL--GGDVQVIPISALTGENLDLLEEAILLLA  315 (683)
T ss_pred             CCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHc--CCceeEEEeecccCCChHHHHHHHHHHH
Confidence            9999999999988753221  12211   11222  2457889999999999998887776544

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.49  E-value=3.9e-07  Score=93.31  Aligned_cols=67  Identities=10%  Similarity=0.098  Sum_probs=51.3

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      +..++++||+|+..|-.--....+.+|++|+|+|..+           .-...+...+.....    .+.|++++.||+|
T Consensus        97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~-----------Gv~~~t~~~~~~~~~----~~~p~i~~iNK~D  161 (843)
T PLN00116         97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------GVCVQTETVLRQALG----ERIRPVLTVNKMD  161 (843)
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCC-----------CCcccHHHHHHHHHH----CCCCEEEEEECCc
Confidence            5788999999998887666667789999999999886           111223445555543    3689999999999


Q ss_pred             cc
Q psy8318         250 LF  251 (313)
Q Consensus       250 l~  251 (313)
                      ..
T Consensus       162 ~~  163 (843)
T PLN00116        162 RC  163 (843)
T ss_pred             cc
Confidence            87

>PTZ00416 elongation factor 2; Provisional

Probab=98.49  E-value=4.3e-07  Score=92.87  Aligned_cols=67  Identities=12%  Similarity=0.145  Sum_probs=50.7

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      +..+.+.||+|+..+-.--...++.+|++|+|+|..+           .-...+...+..+..    .+.|+++|.||+|
T Consensus        91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~-----------g~~~~t~~~~~~~~~----~~~p~iv~iNK~D  155 (836)
T PTZ00416         91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVE-----------GVCVQTETVLRQALQ----ERIRPVLFINKVD  155 (836)
T ss_pred             ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCC-----------CcCccHHHHHHHHHH----cCCCEEEEEEChh
Confidence            5679999999998776666667889999999999886           112223455555544    3579999999999


Q ss_pred             cc
Q psy8318         250 LF  251 (313)
Q Consensus       250 l~  251 (313)
                      +.
T Consensus       156 ~~  157 (836)
T PTZ00416        156 RA  157 (836)
T ss_pred             hh
Confidence            87

>cd01855 YqeH YqeH

Probab=98.49  E-value=1.6e-07  Score=79.25  Aligned_cols=96  Identities=11%  Similarity=0.097  Sum_probs=62.0

Q ss_pred             ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCccccc
Q psy8318         184 ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVC  263 (313)
Q Consensus       184 ~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~  263 (313)
                      ++..|..++++++++++|+|+++.+.         ...+.+   .   .  ...+.|+++|+||+|+..+......+...
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~---------~~~~~l---~---~--~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~   86 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG---------SLIPRL---R---L--FGGNNPVILVGNKIDLLPKDKNLVRIKNW   86 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC---------ccchhH---H---H--hcCCCcEEEEEEchhcCCCCCCHHHHHHH
Confidence            67889999999999999999997431         111111   1   1  12457999999999986432111111111


Q ss_pred             C-----cCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         264 F-----PEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       264 f-----~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      .     ... ......++++||++|.|+.++++++.+.+
T Consensus        87 ~~~~~~~~~-~~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          87 LRAKAAAGL-GLKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             HHHHHHhhc-CCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            1     101 00112478999999999999999998865

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.47  E-value=3.2e-07  Score=78.89  Aligned_cols=128  Identities=13%  Similarity=0.235  Sum_probs=71.5

Q ss_pred             ecceeEEEEEecCceeeeEecCCCcccc-------cccc----ccccCCcEEEEEEecCCcccccccccccccHHHHHHH
Q psy8318         158 TTGIIETHFTFKDLHFKMFDVGGQRSER-------KKWI----HCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKL  226 (313)
Q Consensus       158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r-------~~w~----~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~  226 (313)
                      |..+........+..+.++||+|--.-+       +...    .+..+.+++|||+++..|         ...-...++.
T Consensus        36 t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~---------t~~~~~~l~~  106 (212)
T PF04548_consen   36 TQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRF---------TEEDREVLEL  106 (212)
T ss_dssp             -SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB----------SHHHHHHHHH
T ss_pred             ccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcc---------hHHHHHHHHH
Confidence            3445555557788999999999942111       1111    134679999999999875         3455667777


Q ss_pred             HHHHHhCCCCCCCcEEEEeecCCcccccc-----c---CCcccccCcCCCCCCCeEEEEeecc------cCcCHHHHHHH
Q psy8318         227 FDSICNSKWFMDTSIILFLNKNDLFQEKI-----T---KSPLTVCFPEYTDQKEIYTHFTCAT------DTSNIQFVFDA  292 (313)
Q Consensus       227 ~~~~~~~~~~~~~piilv~NK~Dl~~~k~-----~---~~~l~~~f~~~~~~~~~~~~~tSA~------~~~~v~~~f~~  292 (313)
                      +.+++.....  ..++|+++..|-.....     .   ...+.+.+..+ ..+   ++.....      +...+.++++.
T Consensus       107 l~~~FG~~~~--k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c-~~R---~~~f~n~~~~~~~~~~qv~~Ll~~  180 (212)
T PF04548_consen  107 LQEIFGEEIW--KHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKC-GGR---YHVFNNKTKDKEKDESQVSELLEK  180 (212)
T ss_dssp             HHHHHCGGGG--GGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHT-TTC---EEECCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccHHHH--hHhhHHhhhccccccccHHHHHhccCchhHhHHhhhc-CCE---EEEEeccccchhhhHHHHHHHHHH
Confidence            7777765433  35788888888654321     1   01122223323 222   2222222      34568888888


Q ss_pred             HHHHHHHh
Q psy8318         293 VTDVIIKA  300 (313)
Q Consensus       293 i~~~i~~~  300 (313)
                      |-+.+..+
T Consensus       181 ie~mv~~n  188 (212)
T PF04548_consen  181 IEEMVQEN  188 (212)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            87777655

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=1.6e-06  Score=81.83  Aligned_cols=114  Identities=17%  Similarity=0.100  Sum_probs=79.9

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      +.-.+.|.||+||+-|..+...=.+=+|.+|+|++..|-        -..+..|+.+..+.       .++|++++.||+
T Consensus        53 ~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDG--------v~pQTiEAI~hak~-------a~vP~iVAiNKi  117 (509)
T COG0532          53 KIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDG--------VMPQTIEAINHAKA-------AGVPIVVAINKI  117 (509)
T ss_pred             CCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCC--------cchhHHHHHHHHHH-------CCCCEEEEEecc
Confidence            346899999999999998888877889999999999972        13344444443332       579999999999


Q ss_pred             Cccccccc--CCccccc--CcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         249 DLFQEKIT--KSPLTVC--FPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       249 Dl~~~k~~--~~~l~~~--f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      |.......  ..++.++  .++- -.+...+.++||++|+|+.+++..+.-...
T Consensus       118 Dk~~~np~~v~~el~~~gl~~E~-~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae  170 (509)
T COG0532         118 DKPEANPDKVKQELQEYGLVPEE-WGGDVIFVPVSAKTGEGIDELLELILLLAE  170 (509)
T ss_pred             cCCCCCHHHHHHHHHHcCCCHhh-cCCceEEEEeeccCCCCHHHHHHHHHHHHH
Confidence            98753111  1112111  1111 124478899999999999999988875543

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.40  E-value=9.3e-07  Score=81.78  Aligned_cols=123  Identities=14%  Similarity=0.192  Sum_probs=81.6

Q ss_pred             eeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc
Q psy8318         161 IIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS  240 (313)
Q Consensus       161 ~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p  240 (313)
                      -....+.|+++++++.||+|+-.|.---...+.=+|+|+++||..+           -.+..+.-.+...+.    .+.+
T Consensus        58 aKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~E-----------GpMPQTrFVlkKAl~----~gL~  122 (603)
T COG1217          58 AKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE-----------GPMPQTRFVLKKALA----LGLK  122 (603)
T ss_pred             eccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEccc-----------CCCCchhhhHHHHHH----cCCC
Confidence            3445678899999999999998877666666777999999999997           344444545555544    2456


Q ss_pred             EEEEeecCCcccccccC--CcccccCcCCC---CCCCeEEEEeecccCc----------CHHHHHHHHHHHHH
Q psy8318         241 IILFLNKNDLFQEKITK--SPLTVCFPEYT---DQKEIYTHFTCATDTS----------NIQFVFDAVTDVII  298 (313)
Q Consensus       241 iilv~NK~Dl~~~k~~~--~~l~~~f~~~~---~~~~~~~~~tSA~~~~----------~v~~~f~~i~~~i~  298 (313)
                      -|||.||+|.+.++-..  .+.-+.|-+..   ....+++.+.||..|.          ++..+|+.|.+.+-
T Consensus       123 PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp  195 (603)
T COG1217         123 PIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVP  195 (603)
T ss_pred             cEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence            67789999988764221  12222232221   2245678888887653          56677777766553

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.39  E-value=1.2e-06  Score=79.88  Aligned_cols=109  Identities=10%  Similarity=0.031  Sum_probs=65.9

Q ss_pred             ecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeec
Q psy8318         168 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNK  247 (313)
Q Consensus       168 ~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK  247 (313)
                      ..+..+.|.||+|-....   .....-+|.+++|.+...          ...+.....   .++.      ..-++|.||
T Consensus       146 ~~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~----------gd~iq~~k~---gi~E------~aDIiVVNK  203 (332)
T PRK09435        146 AAGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGA----------GDELQGIKK---GIME------LADLIVINK  203 (332)
T ss_pred             ccCCCEEEEECCCCccch---hHHHHhCCEEEEEecCCc----------hHHHHHHHh---hhhh------hhheEEeeh
Confidence            357889999999975222   224567999999976333          222222221   1221      223799999


Q ss_pred             CCcccccc---cCCcccccCcCCC---CCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         248 NDLFQEKI---TKSPLTVCFPEYT---DQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       248 ~Dl~~~k~---~~~~l~~~f~~~~---~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      .|+....-   ...++...+....   ......++.+||+++.||.+++++|.+.+.
T Consensus       204 aDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        204 ADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             hcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            99764321   1122333332110   112236889999999999999999998764

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.39  E-value=9.7e-07  Score=89.26  Aligned_cols=69  Identities=17%  Similarity=0.224  Sum_probs=50.4

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ++..+.++||+|+..+...-....+.+|++|+|+|..+           .-.......+......    +.|.+++.||+
T Consensus        85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~-----------g~~~~t~~~~~~~~~~----~~~~iv~iNK~  149 (731)
T PRK07560         85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVE-----------GVMPQTETVLRQALRE----RVKPVLFINKV  149 (731)
T ss_pred             CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCC-----------CCCccHHHHHHHHHHc----CCCeEEEEECc
Confidence            46789999999998877666667889999999999875           1122344445543332    35789999999


Q ss_pred             Cccc
Q psy8318         249 DLFQ  252 (313)
Q Consensus       249 Dl~~  252 (313)
                      |...
T Consensus       150 D~~~  153 (731)
T PRK07560        150 DRLI  153 (731)
T ss_pred             hhhc
Confidence            9763

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.34  E-value=2.9e-07  Score=85.38  Aligned_cols=99  Identities=12%  Similarity=0.176  Sum_probs=64.3

Q ss_pred             CccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcc
Q psy8318         181 QRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPL  260 (313)
Q Consensus       181 q~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l  260 (313)
                      ++.++.+...++.++++|++|+|+.+++.         ++.   ..+.+.+     .+.|+++|+||+|+..+......+
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~---------s~~---~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~  112 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG---------SLI---PELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKI  112 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC---------Ccc---HHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHH
Confidence            45677777888899999999999988532         211   2222222     257999999999987543322222


Q ss_pred             cccCcCCCCCCCe---EEEEeecccCcCHHHHHHHHHHH
Q psy8318         261 TVCFPEYTDQKEI---YTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       261 ~~~f~~~~~~~~~---~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      .+.+.++....++   .++.+||++|.|+.++|+.+.+.
T Consensus       113 ~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       113 KEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            2221111011222   47899999999999999998764

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.33  E-value=4.4e-06  Score=75.68  Aligned_cols=106  Identities=12%  Similarity=0.032  Sum_probs=62.3

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .++.+.|.||+|-..   ........+|.++++.+...          .   .+.......+      .+.|.++++||+
T Consensus       125 ~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~----------~---~el~~~~~~l------~~~~~ivv~NK~  182 (300)
T TIGR00750       125 AGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGT----------G---DDLQGIKAGL------MEIADIYVVNKA  182 (300)
T ss_pred             CCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCc----------c---HHHHHHHHHH------hhhccEEEEEcc
Confidence            568899999998531   12234566777777743322          1   2222222222      346789999999


Q ss_pred             Cccccccc---CC----cccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         249 DLFQEKIT---KS----PLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       249 Dl~~~k~~---~~----~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      |+....-.   ..    .+....... ......++.+||++++|+.++++++.+..
T Consensus       183 Dl~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       183 DGEGATNVTIARLMLALALEEIRRRE-DGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             cccchhHHHHHHHHHHHHHhhccccc-cCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            98753210   00    111111111 11223579999999999999999998864

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=98.33  E-value=3.5e-06  Score=74.05  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=22.1

Q ss_pred             hhhccceEEEEcCCCCchhHHHHHH
Q psy8318           6 WQEREVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus         6 ~~~~~~killlG~~~sGKst~~kq~   30 (313)
                      .....++|+++|.+|+||||+++.+
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaL   51 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSI   51 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHH
Confidence            4556799999999999999999885

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=98.29  E-value=2e-06  Score=79.84  Aligned_cols=125  Identities=15%  Similarity=0.128  Sum_probs=82.3

Q ss_pred             eeeecceeEEEEEe-----cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHH
Q psy8318         155 RVKTTGIIETHFTF-----KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDS  229 (313)
Q Consensus       155 ~~~T~g~~~~~~~~-----~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~  229 (313)
                      |--|+-.+...+.|     ..+.++++||+||..|.---...+..|.+.|+|||.+.          --.-+-.-..+..
T Consensus        55 RGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQ----------GveAQTlAN~YlA  124 (603)
T COG0481          55 RGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQ----------GVEAQTLANVYLA  124 (603)
T ss_pred             cCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECcc----------chHHHHHHHHHHH
Confidence            33444434444444     23889999999999887666677889999999999995          1111111222322


Q ss_pred             HHhCCCCCCCcEEEEeecCCccccccc--CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         230 ICNSKWFMDTSIILFLNKNDLFQEKIT--KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       230 ~~~~~~~~~~piilv~NK~Dl~~~k~~--~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      + .    .+.-++-|+||+|++.+...  ..++.+.+.-    ..-....+||++|.||.++++.|.+.+-
T Consensus       125 l-e----~~LeIiPViNKIDLP~Adpervk~eIe~~iGi----d~~dav~~SAKtG~gI~~iLe~Iv~~iP  186 (603)
T COG0481         125 L-E----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGI----DASDAVLVSAKTGIGIEDVLEAIVEKIP  186 (603)
T ss_pred             H-H----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCC----CcchheeEecccCCCHHHHHHHHHhhCC
Confidence            2 2    35678999999999876322  2244443321    1124678999999999999999988764

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=98.27  E-value=1.3e-05  Score=71.26  Aligned_cols=124  Identities=13%  Similarity=0.110  Sum_probs=75.2

Q ss_pred             EEEEEecCceeeeEecCCC----c---cccccccccccCCcEEEEEEecCCccc----cccc--c---------------
Q psy8318         163 ETHFTFKDLHFKMFDVGGQ----R---SERKKWIHCFEGVTAIIFCVALSGYDS----VLAE--D---------------  214 (313)
Q Consensus       163 ~~~~~~~~~~~~i~D~~Gq----~---~~r~~w~~~~~~~~~iifv~dls~~d~----~~~e--~---------------  214 (313)
                      ..-++|++.++|+.|++|-    .   ...+.-....++||.|++|+|+..-..    ...|  +               
T Consensus       102 PG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~  181 (365)
T COG1163         102 PGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIK  181 (365)
T ss_pred             cceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEE
Confidence            3356779999999999973    1   122455667899999999999985221    0000  0               


Q ss_pred             ---------ccc-----ccHHHHHHHHH---------------------HHHhCCCCCCCcEEEEeecCCcccccccCCc
Q psy8318         215 ---------EEM-----NRMIESMKLFD---------------------SICNSKWFMDTSIILFLNKNDLFQEKITKSP  259 (313)
Q Consensus       215 ---------~~~-----~~l~e~~~~~~---------------------~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~  259 (313)
                               ..+     -........+.                     ..+... ..-+|-+.+.||.|+... -....
T Consensus       182 kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~n-rvY~p~l~v~NKiD~~~~-e~~~~  259 (365)
T COG1163         182 KKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGN-RVYKPALYVVNKIDLPGL-EELER  259 (365)
T ss_pred             EeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhc-ceeeeeEEEEecccccCH-HHHHH
Confidence                     000     11111222222                     222211 234799999999998762 11222


Q ss_pred             ccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         260 LTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       260 l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +.+         ...++++||..+.|++++.+.+.+.+
T Consensus       260 l~~---------~~~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         260 LAR---------KPNSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             HHh---------ccceEEEecccCCCHHHHHHHHHHhh
Confidence            222         12578899999999999998888765

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.24  E-value=8e-06  Score=68.20  Aligned_cols=110  Identities=9%  Similarity=0.222  Sum_probs=63.3

Q ss_pred             eeeEecCCC------ccccccccc----ccc---CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCC
Q psy8318         173 FKMFDVGGQ------RSERKKWIH----CFE---GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDT  239 (313)
Q Consensus       173 ~~i~D~~Gq------~~~r~~w~~----~~~---~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~  239 (313)
                      +.+.|++|=      ...+..|..    |++   +-.+++.++|+-..         ....+  .+.++-+ ..   .+.
T Consensus        72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~---------~~~~D--~em~~~l-~~---~~i  136 (200)
T COG0218          72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHP---------PKDLD--REMIEFL-LE---LGI  136 (200)
T ss_pred             EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCC---------CcHHH--HHHHHHH-HH---cCC
Confidence            888999982      344556644    443   35677888887752         11111  1233222 22   468


Q ss_pred             cEEEEeecCCcccccccC---CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         240 SIILFLNKNDLFQEKITK---SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       240 piilv~NK~Dl~~~k~~~---~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      |++|++||+|.....-..   ..+.+.+........+ +...|+..+.|++++-..|...+.
T Consensus       137 ~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~-~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         137 PVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQW-VVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             CeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccce-EEEEecccccCHHHHHHHHHHHhh
Confidence            999999999954421111   1222222212111223 778889999999888888777654

>KOG1144|consensus

Probab=98.23  E-value=3.6e-06  Score=81.71  Aligned_cols=123  Identities=18%  Similarity=0.148  Sum_probs=85.1

Q ss_pred             eeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCccc
Q psy8318         173 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQ  252 (313)
Q Consensus       173 ~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  252 (313)
                      +.++||+|+++|..+....-.-|+.+|.|+|+..-=        -....+++.++..       +++||||.+||+|.+-
T Consensus       542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGl--------epqtiESi~lLR~-------rktpFivALNKiDRLY  606 (1064)
T KOG1144|consen  542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGL--------EPQTIESINLLRM-------RKTPFIVALNKIDRLY  606 (1064)
T ss_pred             eEEecCCCchhhhhhhhccccccceEEEEeehhccC--------CcchhHHHHHHHh-------cCCCeEEeehhhhhhc
Confidence            678899999999999888888899999999998521        1334455555432       5799999999999642


Q ss_pred             c--cccCCcccccCc--------CCC-------------------------CCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         253 E--KITKSPLTVCFP--------EYT-------------------------DQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       253 ~--k~~~~~l~~~f~--------~~~-------------------------~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      .  .....++.+.+.        +|.                         ...-+...+|||..|+||-+++-||.+.-
T Consensus       607 gwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt  686 (1064)
T KOG1144|consen  607 GWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT  686 (1064)
T ss_pred             ccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence            1  112222222111        111                         12346788999999999999999999877


Q ss_pred             HHhhhhhcCCccc
Q psy8318         298 IKANLKDCGIREE  310 (313)
Q Consensus       298 ~~~~~~~~~~~~~  310 (313)
                      .....+.+-..+.
T Consensus       687 Qk~m~~kl~y~~e  699 (1064)
T KOG1144|consen  687 QKTMVEKLAYVDE  699 (1064)
T ss_pred             HHHHHHHHhhhhh
Confidence            7666666554443

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.21  E-value=7.4e-06  Score=70.08  Aligned_cols=57  Identities=9%  Similarity=0.045  Sum_probs=38.3

Q ss_pred             CCcEEEEeecCCcccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         238 DTSIILFLNKNDLFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       238 ~~piilv~NK~Dl~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      ..|.++++||+|+..+.- ....+.+.+...  .....++++||++|.|+.++|+|+.+.
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~--~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGFDVEKMKADAKKI--NPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hhCCEEEEEHHHccccchhhHHHHHHHHHHh--CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            357899999999864211 111222222212  134679999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=98.20  E-value=1.6e-06  Score=67.16  Aligned_cols=76  Identities=12%  Similarity=0.060  Sum_probs=48.0

Q ss_pred             ccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCC
Q psy8318         188 WIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEY  267 (313)
Q Consensus       188 w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~  267 (313)
                      ...+++++++++.|++.++          .+++...  |...+... .-.+.|+++++||.|+..+.    ++...    
T Consensus        40 ~~~~~~s~~~~~~v~~~~~----------~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~----~~~~~----   98 (124)
T smart00010       40 DPTSYESFDVVLQCWRVDD----------RDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEER----QVATE----   98 (124)
T ss_pred             cccccCCCCEEEEEEEccC----------HHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhC----cCCHH----
Confidence            4556788899999999887          5555432  44443332 22458899999999975431    11110    


Q ss_pred             CCCCCeEEEEeecccCcCHH
Q psy8318         268 TDQKEIYTHFTCATDTSNIQ  287 (313)
Q Consensus       268 ~~~~~~~~~~tSA~~~~~v~  287 (313)
                         ....++++||+++.|+.
T Consensus        99 ---~~~~~~~~s~~~~~~~~  115 (124)
T smart00010       99 ---EGLEFAETSAKTPEEGE  115 (124)
T ss_pred             ---HHHHHHHHhCCCcchhh
Confidence               11234578999999984

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.16  E-value=1.1e-05  Score=72.56  Aligned_cols=75  Identities=8%  Similarity=0.170  Sum_probs=43.1

Q ss_pred             EecCceeeeEecCCCcccccc---ccccc------cCCcEEEEEEecCCcccccccccccccH-HHHHHHHHHHHhCCCC
Q psy8318         167 TFKDLHFKMFDVGGQRSERKK---WIHCF------EGVTAIIFCVALSGYDSVLAEDEEMNRM-IESMKLFDSICNSKWF  236 (313)
Q Consensus       167 ~~~~~~~~i~D~~Gq~~~r~~---w~~~~------~~~~~iifv~dls~~d~~~~e~~~~~~l-~e~~~~~~~~~~~~~~  236 (313)
                      ..++.++++|||+|.......   .....      .+.|++|||.+++...        .... ...++.+...+.... 
T Consensus        82 ~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R--------~~~~DkqlLk~Iqe~FG~~i-  152 (313)
T TIGR00991        82 TRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR--------VDTLDGQVIRAITDSFGKDI-  152 (313)
T ss_pred             EECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCccc--------CCHHHHHHHHHHHHHhhhhh-
Confidence            347889999999997543211   11111      2689999997766410        1111 223444444443221 


Q ss_pred             CCCcEEEEeecCCcc
Q psy8318         237 MDTSIILFLNKNDLF  251 (313)
Q Consensus       237 ~~~piilv~NK~Dl~  251 (313)
                       ..+.+|++|+.|..
T Consensus       153 -w~~~IVVfTh~d~~  166 (313)
T TIGR00991       153 -WRKSLVVLTHAQFS  166 (313)
T ss_pred             -hccEEEEEECCccC
Confidence             24789999999954

>cd01882 BMS1 Bms1

Probab=98.15  E-value=1.3e-05  Score=69.58  Aligned_cols=96  Identities=11%  Similarity=0.129  Sum_probs=54.4

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc-EEEEeec
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS-IILFLNK  247 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p-iilv~NK  247 (313)
                      ++.++.++|++|.-  .... ...+.++++++|+|.+.-          .. .....++..+ ..   .+.| +++|+||
T Consensus        81 ~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllviDa~~~----------~~-~~~~~i~~~l-~~---~g~p~vi~VvnK  142 (225)
T cd01882          81 KKRRLTFIECPNDI--NAMI-DIAKVADLVLLLIDASFG----------FE-METFEFLNIL-QV---HGFPRVMGVLTH  142 (225)
T ss_pred             CCceEEEEeCCchH--HHHH-HHHHhcCEEEEEEecCcC----------CC-HHHHHHHHHH-HH---cCCCeEEEEEec
Confidence            56788999999864  2222 235789999999998751          11 1122233322 22   2356 4559999


Q ss_pred             CCccccc--cc--CCcccccCc-CCCCCCCeEEEEeecccCc
Q psy8318         248 NDLFQEK--IT--KSPLTVCFP-EYTDQKEIYTHFTCATDTS  284 (313)
Q Consensus       248 ~Dl~~~k--~~--~~~l~~~f~-~~~~~~~~~~~~tSA~~~~  284 (313)
                      .|+..+.  ..  ...+.+.+. ++ - ....++++||++.-
T Consensus       143 ~D~~~~~~~~~~~~~~l~~~~~~~~-~-~~~ki~~iSa~~~~  182 (225)
T cd01882         143 LDLFKKNKTLRKTKKRLKHRFWTEV-Y-QGAKLFYLSGIVHG  182 (225)
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHhh-C-CCCcEEEEeeccCC
Confidence            9986321  11  123333221 11 1 23478999999864

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd01859 MJ1464 MJ1464

Probab=98.11  E-value=2.4e-06  Score=69.53  Aligned_cols=94  Identities=11%  Similarity=0.154  Sum_probs=59.4

Q ss_pred             cccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccC
Q psy8318         185 RKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCF  264 (313)
Q Consensus       185 r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f  264 (313)
                      ++++.+..+++|.+|+|+|.++..          .. ....+. ..+..   .+.|+++++||+|+..+... .......
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~----------~~-~~~~l~-~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~~   66 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPE----------LT-RSRKLE-RYVLE---LGKKLLIVLNKADLVPKEVL-EKWKSIK   66 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCc----------cc-CCHHHH-HHHHh---CCCcEEEEEEhHHhCCHHHH-HHHHHHH
Confidence            566778888999999999987621          10 011121 11221   35799999999998542111 1111111


Q ss_pred             cCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         265 PEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       265 ~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                          ...+..++++||+++.|+.++++.+.+.+.
T Consensus        67 ----~~~~~~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          67 ----ESEGIPVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             ----HhCCCcEEEEEccccccHHHHHHHHHHHHh
Confidence                112345789999999999999999987653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.07  E-value=1.4e-05  Score=73.77  Aligned_cols=76  Identities=20%  Similarity=0.371  Sum_probs=60.1

Q ss_pred             eEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318         162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI  241 (313)
Q Consensus       162 ~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi  241 (313)
                      ....|+|.+..+++.||+|++.+..-...-+..+|+++.|+|.+-           ---..++++|+ +|.   ++++||
T Consensus        72 SVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAK-----------GiE~qT~KLfe-Vcr---lR~iPI  136 (528)
T COG4108          72 SVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAK-----------GIEPQTLKLFE-VCR---LRDIPI  136 (528)
T ss_pred             eEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEeccc-----------CccHHHHHHHH-HHh---hcCCce
Confidence            456788999999999999999887766666778999999999984           33345566664 433   478999


Q ss_pred             EEEeecCCccc
Q psy8318         242 ILFLNKNDLFQ  252 (313)
Q Consensus       242 ilv~NK~Dl~~  252 (313)
                      +=+.||.|...
T Consensus       137 ~TFiNKlDR~~  147 (528)
T COG4108         137 FTFINKLDREG  147 (528)
T ss_pred             EEEeecccccc
Confidence            99999999754

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=98.06  E-value=1.6e-05  Score=65.98  Aligned_cols=102  Identities=13%  Similarity=0.066  Sum_probs=58.5

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh-CCCCCCCcEEEEeecCC
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN-SKWFMDTSIILFLNKND  249 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~-~~~~~~~piilv~NK~D  249 (313)
                      ..+-|.+.+|.-.-+   ..+.-+.+.-|+|+|.+.-+...                   .+ .|...+ .=++|.||.|
T Consensus        97 ~Dll~iEs~GNL~~~---~sp~L~d~~~v~VidvteGe~~P-------------------~K~gP~i~~-aDllVInK~D  153 (202)
T COG0378          97 LDLLFIESVGNLVCP---FSPDLGDHLRVVVIDVTEGEDIP-------------------RKGGPGIFK-ADLLVINKTD  153 (202)
T ss_pred             CCEEEEecCcceecc---cCcchhhceEEEEEECCCCCCCc-------------------ccCCCceeE-eeEEEEehHH
Confidence            456677888832211   12223344779999999732110                   01 222222 3478899999


Q ss_pred             cccccccCCcccccCcCCC-CCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         250 LFQEKITKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +...  ...++...-.+.. -+....++++|+++|+|++++++|+....
T Consensus       154 La~~--v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         154 LAPY--VGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             hHHH--hCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            8653  1111111100000 12345789999999999999999987654

>KOG0458|consensus

Probab=98.05  E-value=4.2e-05  Score=72.87  Aligned_cols=125  Identities=16%  Similarity=0.139  Sum_probs=77.4

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .-|..+-...|+-....+++.|.+|+..|-.--..-...+|+.++|+|.+- +.....-.......|-..++..+     
T Consensus       240 GvTm~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~L-----  313 (603)
T KOG0458|consen  240 GVTMDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRSL-----  313 (603)
T ss_pred             ceeEEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHHc-----
Confidence            334444455666677899999999988776544444556899999999873 22111111234555555555444     


Q ss_pred             CCCCcEEEEeecCCccc---ccc--cCCcccccC---cCCCCCCCeEEEEeecccCcCHHH
Q psy8318         236 FMDTSIILFLNKNDLFQ---EKI--TKSPLTVCF---PEYTDQKEIYTHFTCATDTSNIQF  288 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~---~k~--~~~~l~~~f---~~~~~~~~~~~~~tSA~~~~~v~~  288 (313)
                       .-..++++.||+|+-+   ++.  ....+..++   ..| .+..+.+.+||+..|+|+..
T Consensus       314 -gi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf-~es~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  314 -GISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGF-KESSVKFIPISGLSGENLIK  372 (603)
T ss_pred             -CcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCc-ccCCcceEecccccCCcccc
Confidence             2467899999999753   111  111222222   223 34567899999999999753

>PRK00098 GTPase RsgA; Reviewed

Probab=98.03  E-value=7.2e-06  Score=74.17  Aligned_cols=86  Identities=13%  Similarity=0.096  Sum_probs=54.6

Q ss_pred             ccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCC
Q psy8318         192 FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQ  270 (313)
Q Consensus       192 ~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~  270 (313)
                      ..++|.+++|+|+++          +....... .++..+ ..   .++|+++|+||+|+...+.........   + ..
T Consensus        78 aaniD~vllV~d~~~----------p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~---~-~~  139 (298)
T PRK00098         78 AANVDQAVLVFAAKE----------PDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDDLEEARELLAL---Y-RA  139 (298)
T ss_pred             eecCCEEEEEEECCC----------CCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCCHHHHHHHHHH---H-HH
Confidence            389999999999986          22222222 222222 22   468999999999985322111112121   1 22


Q ss_pred             CCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         271 KEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       271 ~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      .++.++++||+++.|+.++++.+..
T Consensus       140 ~g~~v~~vSA~~g~gi~~L~~~l~g  164 (298)
T PRK00098        140 IGYDVLELSAKEGEGLDELKPLLAG  164 (298)
T ss_pred             CCCeEEEEeCCCCccHHHHHhhccC
Confidence            3457899999999999999988753

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=97.99  E-value=3e-05  Score=77.18  Aligned_cols=84  Identities=15%  Similarity=0.147  Sum_probs=62.9

Q ss_pred             eeeecceeEEEEEecC-ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC
Q psy8318         155 RVKTTGIIETHFTFKD-LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS  233 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~-~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~  233 (313)
                      |.-|+.....++.+++ ..++++||+||-.|..--..-.+-+|+++.|+|..+           --...+...|.+... 
T Consensus        59 RGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdave-----------GV~~QTEtv~rqa~~-  126 (697)
T COG0480          59 RGITITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVE-----------GVEPQTETVWRQADK-  126 (697)
T ss_pred             cCCEEeeeeeEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCC-----------CeeecHHHHHHHHhh-
Confidence            3445544555667775 999999999998887777777788999999999986           233344556666544 


Q ss_pred             CCCCCCcEEEEeecCCcccc
Q psy8318         234 KWFMDTSIILFLNKNDLFQE  253 (313)
Q Consensus       234 ~~~~~~piilv~NK~Dl~~~  253 (313)
                         .++|.++|.||+|....
T Consensus       127 ---~~vp~i~fiNKmDR~~a  143 (697)
T COG0480         127 ---YGVPRILFVNKMDRLGA  143 (697)
T ss_pred             ---cCCCeEEEEECcccccc
Confidence               46899999999997654

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.95  E-value=1.3e-05  Score=52.85  Aligned_cols=45  Identities=31%  Similarity=0.431  Sum_probs=32.5

Q ss_pred             CcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         195 VTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       195 ~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .++|+|++|+|+        .+-.++++-..+|+++.  +.+.+.|+++|+||+|
T Consensus        14 ~~~ilfi~D~Se--------~CGysie~Q~~L~~~ik--~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSE--------QCGYSIEEQLSLFKEIK--PLFPNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT---------TTSS-HHHHHHHHHHHH--HHTTTS-EEEEE--TT
T ss_pred             cceEEEEEcCCC--------CCCCCHHHHHHHHHHHH--HHcCCCCEEEEEeccC
Confidence            578999999997        34678899999999985  4577899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG3887|consensus

Probab=97.94  E-value=4.4e-05  Score=65.23  Aligned_cols=116  Identities=18%  Similarity=0.287  Sum_probs=71.4

Q ss_pred             ceeeeEecCCCccccc-c--ccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC--CCCCCCcEEEEe
Q psy8318         171 LHFKMFDVGGQRSERK-K--WIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS--KWFMDTSIILFL  245 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~-~--w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~--~~~~~~piilv~  245 (313)
                      +.+++||.+||-.+=. -  ....|+++.++|||+|.-+            ...+++.-+...+..  +...++.+=++.
T Consensus        75 inf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQd------------dy~eala~L~~~v~raykvNp~in~EVfi  142 (347)
T KOG3887|consen   75 INFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQD------------DYMEALARLHMTVERAYKVNPNINFEVFI  142 (347)
T ss_pred             cceEEeecCCccccCCCccCHHHHHhccCeEEEEEechH------------HHHHHHHHHHHHhhheeecCCCceEEEEE
Confidence            6789999999965322 1  2335899999999999875            344444444333322  233567888999


Q ss_pred             ecCCcccccccCC---cccc----cCcCCC-CCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         246 NKNDLFQEKITKS---PLTV----CFPEYT-DQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       246 NK~Dl~~~k~~~~---~l~~----~f~~~~-~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      .|.|...+....+   .+.+    .+.+.. .+-.+.+|.||..+ -.|-++|..+.+.++.
T Consensus       143 HKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIyD-HSIfEAFSkvVQkLip  203 (347)
T KOG3887|consen  143 HKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIYD-HSIFEAFSKVVQKLIP  203 (347)
T ss_pred             EeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeecc-hHHHHHHHHHHHHHhh
Confidence            9999765422211   1111    112221 23456777787665 5688888888877653

>PRK12289 GTPase RsgA; Reviewed

Probab=97.94  E-value=1.4e-05  Score=73.73  Aligned_cols=91  Identities=13%  Similarity=0.099  Sum_probs=58.0

Q ss_pred             cccccccCCcEEEEEEecCCcccccccccccc-cHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCc
Q psy8318         187 KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMN-RMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFP  265 (313)
Q Consensus       187 ~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~-~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~  265 (313)
                      +....+.++|.+++|+|+.+          +. .......++... .   ..++|++||+||+|+..... .....+.+ 
T Consensus        82 L~R~~~aNvD~vLlV~d~~~----------p~~~~~~LdR~L~~a-~---~~~ip~ILVlNK~DLv~~~~-~~~~~~~~-  145 (352)
T PRK12289         82 LDRPPVANADQILLVFALAE----------PPLDPWQLSRFLVKA-E---STGLEIVLCLNKADLVSPTE-QQQWQDRL-  145 (352)
T ss_pred             eechhhhcCCEEEEEEECCC----------CCCCHHHHHHHHHHH-H---HCCCCEEEEEEchhcCChHH-HHHHHHHH-
Confidence            34456899999999999986          22 111112233222 1   24689999999999864211 11111222 


Q ss_pred             CCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         266 EYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       266 ~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                         ...++.++++||+++.|+.++++++...
T Consensus       146 ---~~~g~~v~~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        146 ---QQWGYQPLFISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             ---HhcCCeEEEEEcCCCCCHHHHhhhhccc
Confidence               2234568999999999999999988653

>cd01858 NGP_1 NGP-1

Probab=97.92  E-value=1.7e-05  Score=64.65  Aligned_cols=89  Identities=10%  Similarity=0.051  Sum_probs=54.8

Q ss_pred             ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCC
Q psy8318         192 FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQK  271 (313)
Q Consensus       192 ~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~  271 (313)
                      ++++|.+++|+|.++..        ...-    ..+...+.. ...+.|+++|+||+|+..+..    +......+....
T Consensus         6 l~~aD~il~VvD~~~p~--------~~~~----~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~----~~~~~~~~~~~~   68 (157)
T cd01858           6 IDSSDVVIQVLDARDPM--------GTRC----KHVEEYLKK-EKPHKHLIFVLNKCDLVPTWV----TARWVKILSKEY   68 (157)
T ss_pred             hhhCCEEEEEEECCCCc--------cccC----HHHHHHHHh-ccCCCCEEEEEEchhcCCHHH----HHHHHHHHhcCC
Confidence            57899999999988621        1111    122222222 123579999999999864321    112222221112


Q ss_pred             CeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         272 EIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       272 ~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ....+.+||+.+.|+.++.+++.+.+
T Consensus        69 ~~~~~~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          69 PTIAFHASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             cEEEEEeeccccccHHHHHHHHHHHH
Confidence            33467899999999999999987654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG3905|consensus

Probab=97.92  E-value=0.00013  Score=64.96  Aligned_cols=62  Identities=10%  Similarity=0.138  Sum_probs=40.5

Q ss_pred             CCcEEEEeecCCcccccccCCccc--------ccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         238 DTSIILFLNKNDLFQEKITKSPLT--------VCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       238 ~~piilv~NK~Dl~~~k~~~~~l~--------~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      ++|++||.+|+|...--....+..        .++..|--..+...++||++...|++-+.++|.+.+..
T Consensus       222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG  291 (473)
T KOG3905|consen  222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYG  291 (473)
T ss_pred             CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcC
Confidence            359999999999743111111211        11111112346678999999999999999999987653

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.90  E-value=0.00012  Score=65.25  Aligned_cols=57  Identities=19%  Similarity=0.218  Sum_probs=37.0

Q ss_pred             CCcEEEEeecCCccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         238 DTSIILFLNKNDLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       238 ~~piilv~NK~Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      ..+-++++||+|+.... .....+.+.+...  .....++.+||++|+|++++.+||.++
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~l--np~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREV--NPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhh--CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            35678899999986420 0111121211111  134679999999999999999999773

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=97.89  E-value=7.8e-05  Score=67.14  Aligned_cols=113  Identities=12%  Similarity=0.115  Sum_probs=68.8

Q ss_pred             cceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHH--HHHHHHhCCCC
Q psy8318         159 TGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK--LFDSICNSKWF  236 (313)
Q Consensus       159 ~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~--~~~~~~~~~~~  236 (313)
                      +.+-...|.-...+|-+-||+|++.+.+.-..=-+.|+..|.++|.-.           .-++.+..  ...+++     
T Consensus        74 IDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~-----------Gvl~QTrRHs~I~sLL-----  137 (431)
T COG2895          74 IDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK-----------GVLEQTRRHSFIASLL-----  137 (431)
T ss_pred             EEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch-----------hhHHHhHHHHHHHHHh-----
Confidence            333334444467899999999999876654444566899999999853           33333332  222222     


Q ss_pred             CCCcEEEEeecCCcccccc-cCCcccccCcCCC---CCCCeEEEEeecccCcCHH
Q psy8318         237 MDTSIILFLNKNDLFQEKI-TKSPLTVCFPEYT---DQKEIYTHFTCATDTSNIQ  287 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~-~~~~l~~~f~~~~---~~~~~~~~~tSA~~~~~v~  287 (313)
                      .=..++|..||+||.+=.- .-..+...|-.|.   .-....+.++||..|+||.
T Consensus       138 GIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         138 GIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             CCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            2257899999999865211 1112222221121   2234578999999999984

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=97.76  E-value=0.00023  Score=68.02  Aligned_cols=62  Identities=10%  Similarity=0.220  Sum_probs=41.4

Q ss_pred             CcEEEEeecCCcccccccCC-c--------ccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         239 TSIILFLNKNDLFQEKITKS-P--------LTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       239 ~piilv~NK~Dl~~~k~~~~-~--------l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      +|++||++|.|.... +... .        +.+++..+--..+...++||++...|+.-+++.|.+.+...-
T Consensus       197 ipi~VV~tksD~~~~-Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~~  267 (472)
T PF05783_consen  197 IPIVVVCTKSDKIET-LEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGFP  267 (472)
T ss_pred             cceEEEEecccHHHH-HhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccCC
Confidence            699999999997542 2111 1        111111111235777889999999999999999888876543

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG0705|consensus

Probab=97.74  E-value=4.7e-05  Score=71.95  Aligned_cols=116  Identities=18%  Similarity=0.180  Sum_probs=80.4

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      +..-+.+.|.||..     -..|-..++++||||.+-+          .++++....+...+.........|+++++.+.
T Consensus        75 qs~lLlirdeg~~~-----~aQft~wvdavIfvf~~~d----------~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd  139 (749)
T KOG0705|consen   75 QSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSVED----------EQSFQAVQALAHEMSSYRNISDLPLILVGTQD  139 (749)
T ss_pred             cceEeeeecccCCc-----hhhhhhhccceEEEEEecc----------ccCHHHHHHHHhhcccccccccchHHhhcCcc
Confidence            55778888999842     2345577999999999998          67777777777776554445668889888876


Q ss_pred             CcccccccCCcccc-cCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         249 DLFQEKITKSPLTV-CFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       249 Dl~~~k~~~~~l~~-~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      -+.. +........ .+......+.+.++++||.+|.++..+|..++..++..
T Consensus       140 ~iS~-~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~  191 (749)
T KOG0705|consen  140 HISA-KRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIVQL  191 (749)
T ss_pred             hhhc-ccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHHHH
Confidence            4433 222221111 11111133678899999999999999999999887654

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=97.72  E-value=0.00012  Score=67.62  Aligned_cols=63  Identities=13%  Similarity=0.086  Sum_probs=33.1

Q ss_pred             ceeeeEecCCCccccccccccc-----cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEe
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCF-----EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFL  245 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~-----~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~  245 (313)
                      -.+.+||++|-..-+.....|+     ...|.+|.+.+              .++.+.-..+...+..   .+.|+++|-
T Consensus        86 pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s--------------~rf~~ndv~La~~i~~---~gK~fyfVR  148 (376)
T PF05049_consen   86 PNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISS--------------ERFTENDVQLAKEIQR---MGKKFYFVR  148 (376)
T ss_dssp             TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEES--------------SS--HHHHHHHHHHHH---TT-EEEEEE
T ss_pred             CCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeC--------------CCCchhhHHHHHHHHH---cCCcEEEEE
Confidence            4689999999765554455554     45676665443              3444444444443343   468999999


Q ss_pred             ecCCc
Q psy8318         246 NKNDL  250 (313)
Q Consensus       246 NK~Dl  250 (313)
                      +|+|.
T Consensus       149 TKvD~  153 (376)
T PF05049_consen  149 TKVDS  153 (376)
T ss_dssp             --HHH
T ss_pred             ecccc
Confidence            99995

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.69  E-value=6.7e-05  Score=67.51  Aligned_cols=86  Identities=10%  Similarity=0.014  Sum_probs=56.4

Q ss_pred             cccCCcEEEEEEecCCcccccccccccc-cHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCC
Q psy8318         191 CFEGVTAIIFCVALSGYDSVLAEDEEMN-RMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTD  269 (313)
Q Consensus       191 ~~~~~~~iifv~dls~~d~~~~e~~~~~-~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~  269 (313)
                      .+.++|.+++|+|+.+          +. ++.....++..+..    .++|+++|+||+|+..+. ........   + .
T Consensus        75 i~anvD~vllV~d~~~----------p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~-~~~~~~~~---~-~  135 (287)
T cd01854          75 IAANVDQLVIVVSLNE----------PFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDE-EEELELVE---A-L  135 (287)
T ss_pred             EEEeCCEEEEEEEcCC----------CCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChH-HHHHHHHH---H-H
Confidence            4789999999999986          33 33333334433322    368999999999986531 10011111   1 1


Q ss_pred             CCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         270 QKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       270 ~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      ..+..++++||+++.|+.+++.++..
T Consensus       136 ~~g~~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         136 ALGYPVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             hCCCeEEEEECCCCccHHHHHhhhcc
Confidence            23457889999999999999888764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>smart00053 DYNc Dynamin, GTPase

Probab=97.61  E-value=0.00021  Score=62.40  Aligned_cols=69  Identities=16%  Similarity=0.140  Sum_probs=43.0

Q ss_pred             ceeeeEecCCCccc-------------cccccccccC-CcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         171 LHFKMFDVGGQRSE-------------RKKWIHCFEG-VTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~-------------r~~w~~~~~~-~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      ..+.+.|+||-...             +.+-..|+++ .+.|++|+|...          .-.-.++.++.+.+-    .
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~----------d~~~~d~l~ia~~ld----~  190 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANV----------DLANSDALKLAKEVD----P  190 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCC----------CCCchhHHHHHHHHH----H
Confidence            68999999997421             1234456674 458888998764          111123344444432    1


Q ss_pred             CCCcEEEEeecCCcccc
Q psy8318         237 MDTSIILFLNKNDLFQE  253 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~  253 (313)
                      .+.|.++|+||.|...+
T Consensus       191 ~~~rti~ViTK~D~~~~  207 (240)
T smart00053      191 QGERTIGVITKLDLMDE  207 (240)
T ss_pred             cCCcEEEEEECCCCCCc
Confidence            46799999999997653

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG3596 Predicted GTPase [General function prediction only]

Probab=97.60  E-value=0.00042  Score=60.68  Aligned_cols=71  Identities=7%  Similarity=0.215  Sum_probs=52.5

Q ss_pred             cCceeeeEecCCCcc-------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318         169 KDLHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI  241 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~-------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi  241 (313)
                      ++..+.+||++|-..       +|.+...+....|.++++.+..|           ..+.-...++..+... . .+.|+
T Consensus        85 ~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~d-----------raL~~d~~f~~dVi~~-~-~~~~~  151 (296)
T COG3596          85 DGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADD-----------RALGTDEDFLRDVIIL-G-LDKRV  151 (296)
T ss_pred             cccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCC-----------ccccCCHHHHHHHHHh-c-cCcee
Confidence            456799999999654       56667778888999999999887           4444455666666542 2 23799


Q ss_pred             EEEeecCCccc
Q psy8318         242 ILFLNKNDLFQ  252 (313)
Q Consensus       242 ilv~NK~Dl~~  252 (313)
                      +++.|-+|...
T Consensus       152 i~~VtQ~D~a~  162 (296)
T COG3596         152 LFVVTQADRAE  162 (296)
T ss_pred             EEEEehhhhhc
Confidence            99999999765

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=97.57  E-value=0.00055  Score=61.32  Aligned_cols=21  Identities=19%  Similarity=0.582  Sum_probs=19.5

Q ss_pred             cceEEEEcCCCCchhHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~   30 (313)
                      .++|+++|.+|+|||||++-|
T Consensus         4 ~fnImVvG~sG~GKTTFIntL   24 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTL   24 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHH
Confidence            579999999999999999985

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PRK12288 GTPase RsgA; Reviewed

Probab=97.57  E-value=0.00013  Score=67.26  Aligned_cols=87  Identities=11%  Similarity=0.122  Sum_probs=54.8

Q ss_pred             cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCC
Q psy8318         193 EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKE  272 (313)
Q Consensus       193 ~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~  272 (313)
                      .++|.+++|+++..          ..++.....++... .   ..++|++||+||+|+.... ....+......| ...+
T Consensus       119 ANvD~vlIV~s~~p----------~~s~~~Ldr~L~~a-~---~~~i~~VIVlNK~DL~~~~-~~~~~~~~~~~y-~~~g  182 (347)
T PRK12288        119 ANIDQIVIVSAVLP----------ELSLNIIDRYLVAC-E---TLGIEPLIVLNKIDLLDDE-GRAFVNEQLDIY-RNIG  182 (347)
T ss_pred             EEccEEEEEEeCCC----------CCCHHHHHHHHHHH-H---hcCCCEEEEEECccCCCcH-HHHHHHHHHHHH-HhCC
Confidence            55899999999764          33333333333322 2   2468999999999986531 101111111122 2234


Q ss_pred             eEEEEeecccCcCHHHHHHHHHH
Q psy8318         273 IYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       273 ~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      ..++++||++++|+.++++++..
T Consensus       183 ~~v~~vSA~tg~GideL~~~L~~  205 (347)
T PRK12288        183 YRVLMVSSHTGEGLEELEAALTG  205 (347)
T ss_pred             CeEEEEeCCCCcCHHHHHHHHhh
Confidence            67899999999999999998865

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.56  E-value=0.00027  Score=65.54  Aligned_cols=123  Identities=16%  Similarity=0.122  Sum_probs=80.1

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      -|+-+....++.++..+.|.|++|++.+-+--..-....+++++|++..+-        -.....|.+..+..+      
T Consensus        36 ~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deG--------l~~qtgEhL~iLdll------  101 (447)
T COG3276          36 ITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEG--------LMAQTGEHLLILDLL------  101 (447)
T ss_pred             ceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccC--------cchhhHHHHHHHHhc------
Confidence            344444445555677899999999987654434445678999999998641        123444555544433      


Q ss_pred             CCCcEEEEeecCCcccccccC---CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKITK---SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~~---~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      .....++++||+|..+.....   .++....+ +   ....++.+||++|+||.++-+.|.+..
T Consensus       102 gi~~giivltk~D~~d~~r~e~~i~~Il~~l~-l---~~~~i~~~s~~~g~GI~~Lk~~l~~L~  161 (447)
T COG3276         102 GIKNGIIVLTKADRVDEARIEQKIKQILADLS-L---ANAKIFKTSAKTGRGIEELKNELIDLL  161 (447)
T ss_pred             CCCceEEEEeccccccHHHHHHHHHHHHhhcc-c---ccccccccccccCCCHHHHHHHHHHhh
Confidence            345679999999987542111   12222222 2   344568999999999999999988866

>PRK13796 GTPase YqeH; Provisional

Probab=97.53  E-value=0.0001  Score=68.58  Aligned_cols=87  Identities=13%  Similarity=0.213  Sum_probs=53.1

Q ss_pred             cCCc-EEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCC
Q psy8318         193 EGVT-AIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQK  271 (313)
Q Consensus       193 ~~~~-~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~  271 (313)
                      ...+ .|++|+|+.|+.         .++.   ..+..+.     .+.|+++|+||+|+.........+.+.+..+....
T Consensus        67 ~~~~~lIv~VVD~~D~~---------~s~~---~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         67 GDSDALVVNVVDIFDFN---------GSWI---PGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             cccCcEEEEEEECccCC---------Cchh---HHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence            3444 889999999853         2222   2233332     25799999999999653222222222211110112


Q ss_pred             Ce---EEEEeecccCcCHHHHHHHHHHH
Q psy8318         272 EI---YTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       272 ~~---~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      ++   .++.+||+++.|+.++++.+.+.
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            22   57899999999999999998764

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.48  E-value=0.00018  Score=58.47  Aligned_cols=84  Identities=15%  Similarity=0.107  Sum_probs=50.4

Q ss_pred             cEEEEEEecCCcccccccccccccHHHHHHHHH-HHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeE
Q psy8318         196 TAIIFCVALSGYDSVLAEDEEMNRMIESMKLFD-SICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIY  274 (313)
Q Consensus       196 ~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~-~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~  274 (313)
                      |.+++|+|..+          +....+  .++. ..+..   .+.|+++|+||+|+..+.... .....+..   .....
T Consensus         1 Dvvl~VvD~~~----------p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~-~~~~~~~~---~~~~~   61 (155)
T cd01849           1 DVILEVLDARD----------PLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLR-KWLAYLRH---SYPTI   61 (155)
T ss_pred             CEEEEEEeccC----------CccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHH-HHHHHHHh---hCCce
Confidence            57899999876          211111  1222 22221   468999999999985431111 11111111   12345


Q ss_pred             EEEeecccCcCHHHHHHHHHHHHH
Q psy8318         275 THFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       275 ~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      ++.+||+++.|+.++.+.+.+...
T Consensus        62 ii~vSa~~~~gi~~L~~~i~~~~~   85 (155)
T cd01849          62 PFKISATNGQGIEKKESAFTKQTN   85 (155)
T ss_pred             EEEEeccCCcChhhHHHHHHHHhH
Confidence            788999999999999998877643

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=97.44  E-value=0.00048  Score=60.73  Aligned_cols=112  Identities=17%  Similarity=0.166  Sum_probs=64.9

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      -|+......++-.+..+...|++|+..+-+.-..--...|+.|+|++.+|-       +.+..-+.. -+-.++      
T Consensus        61 ITIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dG-------pmPqTrEHi-Llarqv------  126 (394)
T COG0050          61 ITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG-------PMPQTREHI-LLARQV------  126 (394)
T ss_pred             ceeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCC-------CCCcchhhh-hhhhhc------
Confidence            344433444555778899999999976654333333457999999999972       223332222 111111      


Q ss_pred             CCCcEEEEeecCCcccc-c---ccCCcccccCcCCC-CCCCeEEEEeeccc
Q psy8318         237 MDTSIILFLNKNDLFQE-K---ITKSPLTVCFPEYT-DQKEIYTHFTCATD  282 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~-k---~~~~~l~~~f~~~~-~~~~~~~~~tSA~~  282 (313)
                      .-..+++|+||+|+.+. .   +...+..+.+.+|. .....++...||+.
T Consensus       127 Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~  177 (394)
T COG0050         127 GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALK  177 (394)
T ss_pred             CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhh
Confidence            12357888899998752 2   22335556666664 22345666666653

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=97.43  E-value=0.0003  Score=54.14  Aligned_cols=97  Identities=21%  Similarity=0.273  Sum_probs=61.3

Q ss_pred             EecCCCcccccccccc----ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcc
Q psy8318         176 FDVGGQRSERKKWIHC----FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLF  251 (313)
Q Consensus       176 ~D~~Gq~~~r~~w~~~----~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~  251 (313)
                      +||+|---..+.|.+.    ..+++.+++|-+..+-.         .+|.-   -|..      .-..|+|=+.+|.|+.
T Consensus        42 IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~---------s~f~p---~f~~------~~~k~vIgvVTK~DLa  103 (148)
T COG4917          42 IDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPE---------SRFPP---GFLD------IGVKKVIGVVTKADLA  103 (148)
T ss_pred             cCCchhhhhhhHHHHHHHHHhhccceeeeeecccCcc---------ccCCc---cccc------ccccceEEEEeccccc
Confidence            5899976666777543    47899999999888721         11110   0111      1235689999999998


Q ss_pred             c-ccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         252 Q-EKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       252 ~-~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      + +.+..  .+..+.+. .  .-.+|.+||.+..||+++++.+..
T Consensus       104 ed~dI~~--~~~~L~ea-G--a~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917         104 EDADISL--VKRWLREA-G--AEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             chHhHHH--HHHHHHHc-C--CcceEEEeccCcccHHHHHHHHHh
Confidence            4 32222  11222222 1  225889999999999999988754

>KOG0468|consensus

Probab=97.41  E-value=0.00034  Score=67.73  Aligned_cols=68  Identities=13%  Similarity=0.254  Sum_probs=52.1

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      +..-+++.||+|+..+..-...-++-+|+++.|+|+.+           .-+...-++++...+    .+.|+++++||.
T Consensus       195 KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~E-----------GVmlntEr~ikhaiq----~~~~i~vviNKi  259 (971)
T KOG0468|consen  195 KSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAE-----------GVMLNTERIIKHAIQ----NRLPIVVVINKV  259 (971)
T ss_pred             ceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEccc-----------CceeeHHHHHHHHHh----ccCcEEEEEehh
Confidence            45778999999999888777777889999999999997           222333344444444    357999999999


Q ss_pred             Ccc
Q psy8318         249 DLF  251 (313)
Q Consensus       249 Dl~  251 (313)
                      |..
T Consensus       260 DRL  262 (971)
T KOG0468|consen  260 DRL  262 (971)
T ss_pred             HHH
Confidence            964

>PTZ00258 GTP-binding protein; Provisional

Probab=97.37  E-value=0.00072  Score=63.08  Aligned_cols=25  Identities=24%  Similarity=0.371  Sum_probs=21.9

Q ss_pred             hhhccceEEEEcCCCCchhHHHHHH
Q psy8318           6 WQEREVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus         6 ~~~~~~killlG~~~sGKst~~kq~   30 (313)
                      +...-++|.++|.+++|||||++.+
T Consensus        17 ~~~~~~kvgIVG~PNvGKSTLfnaL   41 (390)
T PTZ00258         17 RPGNNLKMGIVGLPNVGKSTTFNAL   41 (390)
T ss_pred             cCCCCcEEEEECCCCCChHHHHHHH
Confidence            4456779999999999999999996

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=97.33  E-value=0.0015  Score=64.06  Aligned_cols=78  Identities=9%  Similarity=0.123  Sum_probs=46.5

Q ss_pred             EEecCceeeeEecCCCcccc------ccc----ccccc--CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC
Q psy8318         166 FTFKDLHFKMFDVGGQRSER------KKW----IHCFE--GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS  233 (313)
Q Consensus       166 ~~~~~~~~~i~D~~Gq~~~r------~~w----~~~~~--~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~  233 (313)
                      ....+..+.++||+|-....      ..+    ..++.  ++|+||||.+++.+...       ..-..+++.+..++..
T Consensus       161 ~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D-------~eD~~aLr~Iq~lFG~  233 (763)
T TIGR00993       161 GLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRD-------SNDLPLLRTITDVLGP  233 (763)
T ss_pred             EEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCcccc-------HHHHHHHHHHHHHhCH
Confidence            34567899999999965321      111    11333  58999999988753110       0112355556665553


Q ss_pred             CCCCCCcEEEEeecCCccc
Q psy8318         234 KWFMDTSIILFLNKNDLFQ  252 (313)
Q Consensus       234 ~~~~~~piilv~NK~Dl~~  252 (313)
                      ...  ...||+++..|...
T Consensus       234 ~Iw--k~tIVVFThgD~lp  250 (763)
T TIGR00993       234 SIW--FNAIVTLTHAASAP  250 (763)
T ss_pred             HhH--cCEEEEEeCCccCC
Confidence            322  46788899998654

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd01856 YlqF YlqF

Probab=97.31  E-value=0.00028  Score=58.41  Aligned_cols=86  Identities=21%  Similarity=0.140  Sum_probs=53.6

Q ss_pred             ccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCC
Q psy8318         190 HCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTD  269 (313)
Q Consensus       190 ~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~  269 (313)
                      ...+++|.+++|+|.++...        ..   ...+.+.+      .+.|+++++||+|+..+... ....+++..   
T Consensus        15 ~~i~~aD~il~v~D~~~~~~--------~~---~~~i~~~~------~~k~~ilVlNK~Dl~~~~~~-~~~~~~~~~---   73 (171)
T cd01856          15 EKLKLVDLVIEVRDARIPLS--------SR---NPLLEKIL------GNKPRIIVLNKADLADPKKT-KKWLKYFES---   73 (171)
T ss_pred             HHHhhCCEEEEEeeccCccC--------cC---ChhhHhHh------cCCCEEEEEehhhcCChHHH-HHHHHHHHh---
Confidence            35688999999999976210        00   01112211      24699999999998643111 111122111   


Q ss_pred             CCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         270 QKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       270 ~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                       ....++.+||+++.|+.++.+.+.+.+
T Consensus        74 -~~~~vi~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          74 -KGEKVLFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             -cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence             123468899999999999999988865

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0461|consensus

Probab=97.28  E-value=0.0012  Score=59.43  Aligned_cols=115  Identities=17%  Similarity=0.220  Sum_probs=63.1

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      ..++.+.|++|+.+.-+-...--.-.|..+.|+|+..--        .....|.+-+=+-++       ...++|.||.|
T Consensus        69 ~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~--------QtQtAEcLiig~~~c-------~klvvvinkid  133 (522)
T KOG0461|consen   69 QLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGK--------QTQTAECLIIGELLC-------KKLVVVINKID  133 (522)
T ss_pred             cceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhccc--------ccccchhhhhhhhhc-------cceEEEEeccc
Confidence            367899999998654322222222346678999988621        122233333333222       24677888888


Q ss_pred             cccccccCCcc-------cccCcCCCCCCCeEEEEeecccC----cCHHHHHHHHHHHHHH
Q psy8318         250 LFQEKITKSPL-------TVCFPEYTDQKEIYTHFTCATDT----SNIQFVFDAVTDVIIK  299 (313)
Q Consensus       250 l~~~k~~~~~l-------~~~f~~~~~~~~~~~~~tSA~~~----~~v~~~f~~i~~~i~~  299 (313)
                      +..+.-..+.+       .+.+..-+-+-+.++.++||++|    +++.++.+.+...+..
T Consensus       134 ~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  134 VLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             cccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence            76542222221       22221111123467899999999    6666666666555543

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.23  E-value=0.00034  Score=62.41  Aligned_cols=111  Identities=16%  Similarity=0.159  Sum_probs=70.1

Q ss_pred             ceeeeEecCCCccccccccccccC---CcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeec
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEG---VTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNK  247 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~---~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK  247 (313)
                      ..+.|.|.+|++..-   ..++++   .|+.++|++..+   +|.    ..+..|-+..++=+      .-..++++-||
T Consensus        86 R~VSfVDaPGHe~LM---ATMLsGAAlMDgAlLvIaANE---pcP----QPQT~EHl~AleIi------gik~iiIvQNK  149 (415)
T COG5257          86 RRVSFVDAPGHETLM---ATMLSGAALMDGALLVIAANE---PCP----QPQTREHLMALEII------GIKNIIIVQNK  149 (415)
T ss_pred             EEEEEeeCCchHHHH---HHHhcchhhhcceEEEEecCC---CCC----CCchHHHHHHHhhh------ccceEEEEecc
Confidence            357889999998643   334555   488999998875   221    12333333333222      23578999999


Q ss_pred             CCcccccccC---CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         248 NDLFQEKITK---SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       248 ~Dl~~~k~~~---~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      +|+-.+.-..   .++.++.. =+-.-+..+.++||..+.||+.+++.|.+.|-
T Consensus       150 IDlV~~E~AlE~y~qIk~Fvk-Gt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip  202 (415)
T COG5257         150 IDLVSRERALENYEQIKEFVK-GTVAENAPIIPISAQHKANIDALIEAIEKYIP  202 (415)
T ss_pred             cceecHHHHHHHHHHHHHHhc-ccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence            9987542221   12222221 11123457899999999999999999998874

>KOG1143|consensus

Probab=97.23  E-value=0.0007  Score=61.52  Aligned_cols=103  Identities=14%  Similarity=0.160  Sum_probs=62.3

Q ss_pred             ceeeeEecCCCccccccccccccC--CcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEG--VTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~--~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .-++++|.+|+.++.+-..+-+.+  .++..+|++...-        ......|-+-+...+       +.|+.++.+|+
T Consensus       249 KlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~G--------i~~tTrEHLgl~~AL-------~iPfFvlvtK~  313 (591)
T KOG1143|consen  249 KLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRG--------ITWTTREHLGLIAAL-------NIPFFVLVTKM  313 (591)
T ss_pred             ceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCC--------CccccHHHHHHHHHh-------CCCeEEEEEee
Confidence            457899999999888777665543  5677777776531        123334444444333       58999999999


Q ss_pred             Ccccccc---cCCcccccCcCCC----------------------CCCCeEEEEeecccCcCHHH
Q psy8318         249 DLFQEKI---TKSPLTVCFPEYT----------------------DQKEIYTHFTCATDTSNIQF  288 (313)
Q Consensus       249 Dl~~~k~---~~~~l~~~f~~~~----------------------~~~~~~~~~tSA~~~~~v~~  288 (313)
                      |+-...-   ...+++..+....                      ...-.+++.+|...|++.+-
T Consensus       314 Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l  378 (591)
T KOG1143|consen  314 DLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL  378 (591)
T ss_pred             ccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH
Confidence            9865411   1112222111111                      23345788899999998754

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=97.21  E-value=0.0043  Score=57.86  Aligned_cols=27  Identities=22%  Similarity=0.458  Sum_probs=24.2

Q ss_pred             hhhhhccceEEEEcCCCCchhHHHHHH
Q psy8318           4 VQWQEREVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus         4 ~~~~~~~~killlG~~~sGKst~~kq~   30 (313)
                      .+|..+++-|-++|.-.+|||||+|.+
T Consensus        11 a~RT~G~IyIGvvGpvrtGKSTfIn~f   37 (492)
T TIGR02836        11 AERTQGDIYIGVVGPVRTGKSTFIKKF   37 (492)
T ss_pred             HHHhCCcEEEEEEcCCCCChHHHHHHH
Confidence            457778999999999999999999986

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=97.16  E-value=0.0018  Score=59.79  Aligned_cols=20  Identities=30%  Similarity=0.471  Sum_probs=18.8

Q ss_pred             ceEEEEcCCCCchhHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~   30 (313)
                      ++|.++|.+++|||||++.+
T Consensus         3 ~~vgIVG~PNvGKSTLfnaL   22 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNAL   22 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            58999999999999999986

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.14  E-value=0.00029  Score=56.29  Aligned_cols=77  Identities=18%  Similarity=0.159  Sum_probs=44.5

Q ss_pred             cccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCC
Q psy8318         191 CFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQ  270 (313)
Q Consensus       191 ~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~  270 (313)
                      ..+++|++++|+|..+          +....  ...+...+... ..+.|+++++||+|+..+. ......+++.    .
T Consensus         8 ~i~~aD~vl~ViD~~~----------p~~~~--~~~l~~~l~~~-~~~k~~iivlNK~DL~~~~-~~~~~~~~~~----~   69 (141)
T cd01857           8 VVERSDIVVQIVDARN----------PLLFR--PPDLERYVKEV-DPRKKNILLLNKADLLTEE-QRKAWAEYFK----K   69 (141)
T ss_pred             HHhhCCEEEEEEEccC----------CcccC--CHHHHHHHHhc-cCCCcEEEEEechhcCCHH-HHHHHHHHHH----h
Confidence            4678999999999876          11111  11222222221 1468999999999985432 1112222222    1


Q ss_pred             CCeEEEEeecccCcC
Q psy8318         271 KEIYTHFTCATDTSN  285 (313)
Q Consensus       271 ~~~~~~~tSA~~~~~  285 (313)
                      .+..++++||.++.+
T Consensus        70 ~~~~ii~iSa~~~~~   84 (141)
T cd01857          70 EGIVVVFFSALKENA   84 (141)
T ss_pred             cCCeEEEEEecCCCc
Confidence            234678899988764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=97.11  E-value=0.00087  Score=71.39  Aligned_cols=76  Identities=14%  Similarity=0.253  Sum_probs=43.8

Q ss_pred             eeeEecCCCc--------cccccccccc---------cCCcEEEEEEecCCcccccccccccccH-HHHHHHHHHHHhCC
Q psy8318         173 FKMFDVGGQR--------SERKKWIHCF---------EGVTAIIFCVALSGYDSVLAEDEEMNRM-IESMKLFDSICNSK  234 (313)
Q Consensus       173 ~~i~D~~Gq~--------~~r~~w~~~~---------~~~~~iifv~dls~~d~~~~e~~~~~~l-~e~~~~~~~~~~~~  234 (313)
                      -.++||+|.-        ..+..|..++         +..++||+++|+++.-....+  ..... .....-++++. ..
T Consensus       163 avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~--~~~~~a~~lR~rl~el~-~~  239 (1169)
T TIGR03348       163 AVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPA--ERKAHARAIRQRLQELR-EQ  239 (1169)
T ss_pred             EEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHH--HHHHHHHHHHHHHHHHH-HH
Confidence            3478999932        2334576653         348999999999973211100  01111 11222233332 23


Q ss_pred             CCCCCcEEEEeecCCcc
Q psy8318         235 WFMDTSIILFLNKNDLF  251 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~  251 (313)
                      .....|+.|+++|+|+.
T Consensus       240 lg~~~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       240 LGARFPVYLVLTKADLL  256 (1169)
T ss_pred             hCCCCCEEEEEecchhh
Confidence            34578999999999975

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK08118 topology modulation protein; Reviewed

Probab=97.09  E-value=0.00057  Score=56.38  Aligned_cols=23  Identities=43%  Similarity=0.712  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      ||+++|++||||||+.+++--..
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l   25 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKL   25 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            89999999999999999985433

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.08  E-value=0.0022  Score=60.55  Aligned_cols=67  Identities=15%  Similarity=0.117  Sum_probs=39.5

Q ss_pred             cCceeeeEecCCCcccccccccc------ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHC------FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII  242 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~------~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii  242 (313)
                      .++.+.|+||+|.......+..-      ....+.+++|+|.+-          ...-.+..+.|.+.+       .+--
T Consensus       181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~----------Gq~a~~~a~~F~~~~-------~~~g  243 (429)
T TIGR01425       181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSI----------GQAAEAQAKAFKDSV-------DVGS  243 (429)
T ss_pred             CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEecccc----------ChhHHHHHHHHHhcc-------CCcE
Confidence            35788999999965433222221      234678999999774          222233334443321       2456


Q ss_pred             EEeecCCccc
Q psy8318         243 LFLNKNDLFQ  252 (313)
Q Consensus       243 lv~NK~Dl~~  252 (313)
                      +++||.|...
T Consensus       244 ~IlTKlD~~a  253 (429)
T TIGR01425       244 VIITKLDGHA  253 (429)
T ss_pred             EEEECccCCC
Confidence            8899999643

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.07  E-value=0.00038  Score=57.99  Aligned_cols=21  Identities=38%  Similarity=0.762  Sum_probs=19.2

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      .||+++|++||||||+.+++-
T Consensus         1 ~riiilG~pGaGK~T~A~~La   21 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLA   21 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            389999999999999999984

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.02  E-value=0.001  Score=59.59  Aligned_cols=88  Identities=17%  Similarity=0.161  Sum_probs=54.8

Q ss_pred             ccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCC
Q psy8318         190 HCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTD  269 (313)
Q Consensus       190 ~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~  269 (313)
                      ...+.+|.||+|+|..+          +.... . ..+...+     .+.|+++|+||+|+..+.. .....+++..   
T Consensus        17 ~~l~~aDvVl~V~Dar~----------p~~~~-~-~~i~~~l-----~~kp~IiVlNK~DL~~~~~-~~~~~~~~~~---   75 (276)
T TIGR03596        17 EKLKLVDVVIEVLDARI----------PLSSR-N-PMIDEIR-----GNKPRLIVLNKADLADPAV-TKQWLKYFEE---   75 (276)
T ss_pred             HHHhhCCEEEEEEeCCC----------CCCCC-C-hhHHHHH-----CCCCEEEEEEccccCCHHH-HHHHHHHHHH---
Confidence            34688999999999875          11100 1 1122222     2579999999999854211 1111112211   


Q ss_pred             CCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         270 QKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       270 ~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                       .+..++.+||+++.|+.++.+.+.+.+..
T Consensus        76 -~~~~vi~iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        76 -KGIKALAINAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             -cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence             22357889999999999999888877643

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.01  E-value=0.00055  Score=52.87  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCchhHHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~   33 (313)
                      +|++.|.+||||||+++++.-.
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998543

...

>KOG1533|consensus

Probab=97.00  E-value=0.0003  Score=60.05  Aligned_cols=21  Identities=33%  Similarity=0.422  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCchhHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~   32 (313)
                      -.+++|++||||||.+.-|.-
T Consensus         4 gqvVIGPPgSGKsTYc~g~~~   24 (290)
T KOG1533|consen    4 GQVVIGPPGSGKSTYCNGMSQ   24 (290)
T ss_pred             ceEEEcCCCCCccchhhhHHH
Confidence            468999999999999887643

>cd01900 YchF YchF subfamily

Probab=97.00  E-value=0.003  Score=56.27  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=24.4

Q ss_pred             ceeeeEecCCCcc-------ccccccccccCCcEEEEEEecCC
Q psy8318         171 LHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSG  206 (313)
Q Consensus       171 ~~~~i~D~~Gq~~-------~r~~w~~~~~~~~~iifv~dls~  206 (313)
                      ..++++|++|-..       .........+.+|++++|+|..+
T Consensus        62 ~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~  104 (274)
T cd01900          62 ATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE  104 (274)
T ss_pred             eEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence            3588999999432       11122334578999999999764

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PRK07261 topology modulation protein; Provisional

Probab=96.98  E-value=0.00066  Score=56.22  Aligned_cols=23  Identities=30%  Similarity=0.505  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      ||+++|++|||||||.+++.-.+
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~   24 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHY   24 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            79999999999999999985433

>KOG1534|consensus

Probab=96.82  E-value=0.00085  Score=56.46  Aligned_cols=21  Identities=38%  Similarity=0.487  Sum_probs=18.7

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      +-++++|++||||||++..|.
T Consensus         4 ya~lV~GpAgSGKSTyC~~~~   24 (273)
T KOG1534|consen    4 YAQLVMGPAGSGKSTYCSSMY   24 (273)
T ss_pred             eeEEEEccCCCCcchHHHHHH
Confidence            467999999999999999875

>KOG1707|consensus

Probab=96.78  E-value=0.021  Score=54.92  Aligned_cols=88  Identities=13%  Similarity=0.050  Sum_probs=53.3

Q ss_pred             cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCC
Q psy8318         193 EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKE  272 (313)
Q Consensus       193 ~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~  272 (313)
                      ..||++.+++|+++          +.++.-....++.-..   ..+.|+++|+.|.|+.+........-+.|.   ...+
T Consensus       494 ~~cDv~~~~YDsS~----------p~sf~~~a~v~~~~~~---~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~---~~~~  557 (625)
T KOG1707|consen  494 AACDVACLVYDSSN----------PRSFEYLAEVYNKYFD---LYKIPCLMVATKADLDEVPQRYSIQPDEFC---RQLG  557 (625)
T ss_pred             ceeeeEEEecccCC----------chHHHHHHHHHHHhhh---ccCCceEEEeeccccchhhhccCCChHHHH---HhcC
Confidence            67899999999998          5666666555554322   267999999999998764311111112221   1122


Q ss_pred             --eEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         273 --IYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       273 --~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                        -..+..|+..+.  .++|..|.....
T Consensus       558 i~~P~~~S~~~~~s--~~lf~kL~~~A~  583 (625)
T KOG1707|consen  558 LPPPIHISSKTLSS--NELFIKLATMAQ  583 (625)
T ss_pred             CCCCeeeccCCCCC--chHHHHHHHhhh
Confidence              234444443333  678887776554

>KOG2655|consensus

Probab=96.76  E-value=0.012  Score=53.96  Aligned_cols=21  Identities=29%  Similarity=0.632  Sum_probs=19.5

Q ss_pred             cceEEEEcCCCCchhHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~   30 (313)
                      ++.++++|.+|+|||||++.|
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsL   41 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSL   41 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHH
Confidence            478999999999999999995

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.73  E-value=0.0011  Score=52.72  Aligned_cols=19  Identities=42%  Similarity=0.690  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r   31 (313)
                      |++.|.+||||||+.+++.
T Consensus         2 ii~~G~pgsGKSt~a~~l~   20 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLA   20 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6899999999999999975

...

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=96.73  E-value=0.0023  Score=57.59  Aligned_cols=87  Identities=17%  Similarity=0.185  Sum_probs=55.0

Q ss_pred             cccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCC
Q psy8318         191 CFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQ  270 (313)
Q Consensus       191 ~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~  270 (313)
                      ..+.+|.||+|+|..+.          .... . ..+...+.     +.|+++|+||+|+.... ......+++.+    
T Consensus        21 ~l~~aDvIL~VvDar~p----------~~~~-~-~~l~~~~~-----~kp~iiVlNK~DL~~~~-~~~~~~~~~~~----   78 (287)
T PRK09563         21 NLKLVDVVIEVLDARIP----------LSSE-N-PMIDKIIG-----NKPRLLILNKSDLADPE-VTKKWIEYFEE----   78 (287)
T ss_pred             HhhhCCEEEEEEECCCC----------CCCC-C-hhHHHHhC-----CCCEEEEEEchhcCCHH-HHHHHHHHHHH----
Confidence            46889999999998751          1111 0 12223322     57999999999985421 11112222211    


Q ss_pred             CCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         271 KEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       271 ~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      .+..++.+||+++.|+..+.+.+.+.+..
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence            13457889999999999999988877644

>PRK06217 hypothetical protein; Validated

Probab=96.67  E-value=0.0013  Score=55.08  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~   34 (313)
                      .||+++|.+||||||+.+++.-..
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l   25 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERL   25 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            379999999999999999985433

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.59  E-value=0.019  Score=54.65  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=19.7

Q ss_pred             ccceEEEEcCCCCchhHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r   31 (313)
                      ++.-|+++|..||||||++..+-
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA  116 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLA  116 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHH
Confidence            45678999999999999998773

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.57  E-value=0.014  Score=54.18  Aligned_cols=75  Identities=12%  Similarity=0.088  Sum_probs=43.1

Q ss_pred             cCceeeeEecCCCccccccc---cccc---cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCC-cE
Q psy8318         169 KDLHFKMFDVGGQRSERKKW---IHCF---EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDT-SI  241 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w---~~~~---~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~-pi  241 (313)
                      .+..+.++||+|........   ...+   ....-.++|++.+.-         ...+.+...-|......+...-. +-
T Consensus       214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~---------~~~l~evi~~f~~~~~~p~~~~~~~~  284 (374)
T PRK14722        214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSH---------GDTLNEVVQAYRSAAGQPKAALPDLA  284 (374)
T ss_pred             cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccC---------hHHHHHHHHHHHHhhcccccccCCCC
Confidence            45688999999976433222   1122   233456888888751         45556666777666433221111 22


Q ss_pred             EEEeecCCccc
Q psy8318         242 ILFLNKNDLFQ  252 (313)
Q Consensus       242 ilv~NK~Dl~~  252 (313)
                      =++++|.|-..
T Consensus       285 ~~I~TKlDEt~  295 (374)
T PRK14722        285 GCILTKLDEAS  295 (374)
T ss_pred             EEEEeccccCC
Confidence            46789999543

>PRK14974 cell division protein FtsY; Provisional

Probab=96.49  E-value=0.036  Score=50.89  Aligned_cols=22  Identities=23%  Similarity=0.611  Sum_probs=18.7

Q ss_pred             ccceEEEEcCCCCchhHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~   30 (313)
                      +...++++|.+||||||.+..+
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakL  160 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKL  160 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHH
Confidence            3567899999999999977766

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.32  E-value=0.0025  Score=52.16  Aligned_cols=22  Identities=18%  Similarity=0.545  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCchhHHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~   33 (313)
                      ||++.|+.++||||+++.+...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999998644

>PRK03839 putative kinase; Provisional

Probab=96.31  E-value=0.0035  Score=52.15  Aligned_cols=23  Identities=22%  Similarity=0.263  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      +|+++|.+||||||+.+++.-.+
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~   24 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            69999999999999999985443

>KOG0463|consensus

Probab=96.30  E-value=0.031  Score=51.13  Aligned_cols=61  Identities=18%  Similarity=0.289  Sum_probs=46.1

Q ss_pred             cccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHH
Q psy8318         217 MNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQF  288 (313)
Q Consensus       217 ~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~  288 (313)
                      .|-++|.++++..++.++...+.|+++ -++-|+.-.       ...|+   ..+-|.+|.+|-.+|+|+.-
T Consensus       288 ANiLqEtmKll~rllkS~gcrK~PvlV-rs~DDVv~~-------A~NF~---Ser~CPIFQvSNVtG~NL~L  348 (641)
T KOG0463|consen  288 ANILQETMKLLTRLLKSPGCRKLPVLV-RSMDDVVHA-------AVNFP---SERVCPIFQVSNVTGTNLPL  348 (641)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccCcEEE-ecccceEEe-------eccCc---cccccceEEeccccCCChHH
Confidence            688899999999999998888888654 677775432       11233   34678899999999999754

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.29  E-value=0.0037  Score=54.27  Aligned_cols=28  Identities=25%  Similarity=0.406  Sum_probs=23.1

Q ss_pred             hccceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318           8 EREVKLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus         8 ~~~~killlG~~~sGKst~~kq~r~~~~   35 (313)
                      ...+||+++|++||||||+.+++.-.++
T Consensus         4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g   31 (229)
T PTZ00088          4 KGPLKIVLFGAPGVGKGTFAEILSKKEN   31 (229)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3457899999999999999999854443

>PRK01889 GTPase RsgA; Reviewed

Probab=96.28  E-value=0.01  Score=55.02  Aligned_cols=84  Identities=13%  Similarity=0.146  Sum_probs=50.9

Q ss_pred             ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCC
Q psy8318         192 FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQK  271 (313)
Q Consensus       192 ~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~  271 (313)
                      ..++|.+++|+++..       +.+...++..+...+.       .++|.+||+||+|+... ..  +..+.+..+  ..
T Consensus       110 aANvD~vliV~s~~p-------~~~~~~ldr~L~~a~~-------~~i~piIVLNK~DL~~~-~~--~~~~~~~~~--~~  170 (356)
T PRK01889        110 AANVDTVFIVCSLNH-------DFNLRRIERYLALAWE-------SGAEPVIVLTKADLCED-AE--EKIAEVEAL--AP  170 (356)
T ss_pred             EEeCCEEEEEEecCC-------CCChhHHHHHHHHHHH-------cCCCEEEEEEChhcCCC-HH--HHHHHHHHh--CC
Confidence            478999999999852       1112222222222111       35677899999999653 11  111111111  13


Q ss_pred             CeEEEEeecccCcCHHHHHHHHH
Q psy8318         272 EIYTHFTCATDTSNIQFVFDAVT  294 (313)
Q Consensus       272 ~~~~~~tSA~~~~~v~~~f~~i~  294 (313)
                      +..++.+||+++.|+.++..++.
T Consensus       171 g~~Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        171 GVPVLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             CCcEEEEECCCCccHHHHHHHhh
Confidence            45688999999999999888875

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=96.27  E-value=0.0058  Score=41.39  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      -.++.|..||||||++.-+..+-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37999999999999999887643

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.25  E-value=0.0028  Score=53.83  Aligned_cols=23  Identities=26%  Similarity=0.550  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      .++++|++|||||||++-+..+-
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCc
Confidence            68899999999999999876543

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.23  E-value=0.0036  Score=51.15  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~   34 (313)
                      -.+++.|++|||||||+|++-.+-
T Consensus        30 e~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          30 EFIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             ceEEEeCCCCccHHHHHHHHHhcc
Confidence            368899999999999999986554

>COG4639 Predicted kinase [General function prediction only]

Probab=96.22  E-value=0.014  Score=46.94  Aligned_cols=17  Identities=53%  Similarity=0.720  Sum_probs=16.1

Q ss_pred             EEEEcCCCCchhHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQ   29 (313)
Q Consensus        13 illlG~~~sGKst~~kq   29 (313)
                      |+|.|.+|||||||+++
T Consensus         5 vvL~G~~~sGKsT~ak~   21 (168)
T COG4639           5 VVLRGASGSGKSTFAKE   21 (168)
T ss_pred             EEEecCCCCchhHHHHH
Confidence            68999999999999998

>PRK14532 adenylate kinase; Provisional

Probab=96.16  E-value=0.0039  Score=52.26  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCchhHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~   32 (313)
                      +|+++|.+||||||+.+.+--
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999843

>TIGR00959 ffh signal recognition particle protein

Probab=96.16  E-value=0.041  Score=52.20  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=18.8

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      +.-++++|.+||||||++-.+-
T Consensus        99 p~vi~~vG~~GsGKTTtaakLA  120 (428)
T TIGR00959        99 PTVILMVGLQGSGKTTTCGKLA  120 (428)
T ss_pred             CEEEEEECCCCCcHHHHHHHHH
Confidence            5568899999999999987763

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.14  E-value=0.0051  Score=42.70  Aligned_cols=21  Identities=33%  Similarity=0.512  Sum_probs=18.3

Q ss_pred             EEEEcCCCCchhHHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~~   33 (313)
                      |.+.|.+||||||+.+.+.-.
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999998544

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.13  E-value=0.0045  Score=47.92  Aligned_cols=19  Identities=37%  Similarity=0.525  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r   31 (313)
                      |++-|.+||||||+++.+.
T Consensus         1 I~i~G~~GsGKtTia~~L~   19 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELA   19 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHH
Confidence            6899999999999999985

...

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.05  E-value=0.0045  Score=51.38  Aligned_cols=21  Identities=19%  Similarity=0.466  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCchhHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~   32 (313)
                      .++++|++||||||+++++-.
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~   23 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARA   23 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999743

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.05  E-value=0.0045  Score=51.89  Aligned_cols=20  Identities=25%  Similarity=0.614  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .++++|++||||||+++.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~   23 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALR   23 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58899999999999999974

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=96.03  E-value=0.0046  Score=51.45  Aligned_cols=20  Identities=30%  Similarity=0.443  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchhHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~   32 (313)
                      |+++|++||||||+.+++.-
T Consensus         2 i~i~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999743

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK13949 shikimate kinase; Provisional

Probab=96.02  E-value=0.005  Score=50.86  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCchhHHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~   33 (313)
                      +|+++|.+||||||+.+.+--.
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999987433

>PRK14530 adenylate kinase; Provisional

Probab=96.02  E-value=0.0059  Score=52.41  Aligned_cols=24  Identities=33%  Similarity=0.444  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHhc
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~~   35 (313)
                      +|+++|++||||||+.+.+--.++
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~   28 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFG   28 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            899999999999999999854443

>KOG0460|consensus

Probab=96.02  E-value=0.015  Score=52.50  Aligned_cols=103  Identities=20%  Similarity=0.271  Sum_probs=60.7

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ....+-=.|++|+-.|-+.-..=-...|+.|+|+..+|-.        ..+..|-+-+-.++      .=..++++.||.
T Consensus       115 a~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~--------MPQTrEHlLLArQV------GV~~ivvfiNKv  180 (449)
T KOG0460|consen  115 AKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGP--------MPQTREHLLLARQV------GVKHIVVFINKV  180 (449)
T ss_pred             cccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCC--------CcchHHHHHHHHHc------CCceEEEEEecc
Confidence            4456666799999766443322234468999999999821        33334444443333      124688999999


Q ss_pred             Ccccc-c---ccCCcccccCcCCC-CCCCeEEEEe---ecccCcC
Q psy8318         249 DLFQE-K---ITKSPLTVCFPEYT-DQKEIYTHFT---CATDTSN  285 (313)
Q Consensus       249 Dl~~~-k---~~~~~l~~~f~~~~-~~~~~~~~~t---SA~~~~~  285 (313)
                      |+..+ .   +.+-++++.+.+|. +.-.++++.-   ||+.|.+
T Consensus       181 D~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~  225 (449)
T KOG0460|consen  181 DLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQ  225 (449)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCC
Confidence            98732 2   23345566666664 2334555554   4556644

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=95.99  E-value=0.02  Score=47.39  Aligned_cols=23  Identities=26%  Similarity=0.569  Sum_probs=19.5

Q ss_pred             EEEEcCCCCchhHHHHHHHHHhc
Q psy8318          13 LLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~~~~   35 (313)
                      |++.|.+||||||+.+.+.-...
T Consensus         5 i~l~G~~gsGKst~a~~l~~~~~   27 (175)
T cd00227           5 IILNGGSSAGKSSIARALQSVLA   27 (175)
T ss_pred             EEEECCCCCCHHHHHHHHHHhhC
Confidence            78999999999999999864433

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=95.98  E-value=0.005  Score=51.63  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      +|+++|++||||||+.+++.--+
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~   23 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKY   23 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc
Confidence            58999999999999999985433

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=95.97  E-value=0.027  Score=50.27  Aligned_cols=67  Identities=12%  Similarity=0.253  Sum_probs=38.9

Q ss_pred             cCceeeeEecCCCcccccccc-------ccc-----cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWI-------HCF-----EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~-------~~~-----~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      ++..+.++||+|.......+.       ...     ..++.+++|+|.+.-         .+.+..+ ..|.+.+     
T Consensus       153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~---------~~~~~~~-~~f~~~~-----  217 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG---------QNALEQA-KVFNEAV-----  217 (272)
T ss_pred             CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC---------HHHHHHH-HHHHhhC-----
Confidence            457889999999754322221       111     237889999999751         2333333 2222211     


Q ss_pred             CCCcEEEEeecCCccc
Q psy8318         237 MDTSIILFLNKNDLFQ  252 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~  252 (313)
                        .+--+++||.|...
T Consensus       218 --~~~g~IlTKlDe~~  231 (272)
T TIGR00064       218 --GLTGIILTKLDGTA  231 (272)
T ss_pred             --CCCEEEEEccCCCC
Confidence              14468899999643

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=95.94  E-value=0.0053  Score=51.16  Aligned_cols=20  Identities=25%  Similarity=0.476  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .|+++|.+||||||+++.+-
T Consensus         5 ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999874

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK14531 adenylate kinase; Provisional

Probab=95.93  E-value=0.0073  Score=50.48  Aligned_cols=24  Identities=33%  Similarity=0.517  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~   34 (313)
                      .+|+++|++||||||+.+.+---+
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~   26 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAH   26 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            389999999999999999984433

>KOG0410|consensus

Probab=95.92  E-value=0.038  Score=49.73  Aligned_cols=84  Identities=12%  Similarity=0.057  Sum_probs=52.0

Q ss_pred             ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc----EEEEeecCCcccccccCCcccccCcCC
Q psy8318         192 FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS----IILFLNKNDLFQEKITKSPLTVCFPEY  267 (313)
Q Consensus       192 ~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p----iilv~NK~Dl~~~k~~~~~l~~~f~~~  267 (313)
                      ...+|.++-|+|+|.           ...++-......+++.-.....|    ++=|-||.|........++        
T Consensus       255 VaeadlllHvvDiSh-----------P~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E~--------  315 (410)
T KOG0410|consen  255 VAEADLLLHVVDISH-----------PNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEEK--------  315 (410)
T ss_pred             HhhcceEEEEeecCC-----------ccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcccc--------
Confidence            456899999999996           34444444444455543333333    3445677775443221111        


Q ss_pred             CCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         268 TDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       268 ~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                         ..  ...+||++|+|+++..+.+-+.+..
T Consensus       316 ---n~--~v~isaltgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  316 ---NL--DVGISALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             ---CC--ccccccccCccHHHHHHHHHHHhhh
Confidence               11  4678999999999998888776654

>PRK08233 hypothetical protein; Provisional

Probab=95.91  E-value=0.0062  Score=50.48  Aligned_cols=21  Identities=14%  Similarity=0.352  Sum_probs=18.1

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      .-|.+.|.+||||||+.+++.
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~   24 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLT   24 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            456778999999999999974

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=95.90  E-value=0.0065  Score=47.89  Aligned_cols=19  Identities=37%  Similarity=0.644  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .++++|.+|||||||++-+
T Consensus        13 ~~~i~G~nGsGKStLl~~l   31 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKAL   31 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEccCCCccccceeee
Confidence            6899999999999999875

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=95.89  E-value=0.0068  Score=48.20  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=18.7

Q ss_pred             EEEEcCCCCchhHHHHHHHHHh
Q psy8318          13 LLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~~~   34 (313)
                      ++++|++||||||+++++.-.+
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~   23 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEF   23 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcC
Confidence            6899999999999999985443

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>TIGR01351 adk adenylate kinases

Probab=95.88  E-value=0.0068  Score=51.83  Aligned_cols=21  Identities=43%  Similarity=0.607  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCchhHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~   32 (313)
                      ||+++|++||||||+.+++--
T Consensus         1 rI~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999843

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK02496 adk adenylate kinase; Provisional

Probab=95.87  E-value=0.0078  Score=50.22  Aligned_cols=24  Identities=25%  Similarity=0.340  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~   34 (313)
                      +|++++|++||||||+.+.+--.+
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~   25 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHL   25 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            489999999999999999985433

>PRK10867 signal recognition particle protein; Provisional

Probab=95.87  E-value=0.069  Score=50.74  Aligned_cols=21  Identities=19%  Similarity=0.464  Sum_probs=17.8

Q ss_pred             cceEEEEcCCCCchhHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~   30 (313)
                      +.-|+++|.+||||||++-.+
T Consensus       100 p~vI~~vG~~GsGKTTtaakL  120 (433)
T PRK10867        100 PTVIMMVGLQGAGKTTTAGKL  120 (433)
T ss_pred             CEEEEEECCCCCcHHHHHHHH
Confidence            557889999999999977665

>PRK00625 shikimate kinase; Provisional

Probab=95.81  E-value=0.0091  Score=49.52  Aligned_cols=21  Identities=24%  Similarity=0.403  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCchhHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~   32 (313)
                      +|+++|.+||||||+.+++.-
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999843

>PRK00279 adk adenylate kinase; Reviewed

Probab=95.80  E-value=0.0085  Score=51.42  Aligned_cols=24  Identities=33%  Similarity=0.436  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~   34 (313)
                      +||+++|++||||||+.+.+---+
T Consensus         1 ~~I~v~G~pGsGKsT~a~~la~~~   24 (215)
T PRK00279          1 MRLILLGPPGAGKGTQAKFIAEKY   24 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            379999999999999999985333

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=95.79  E-value=0.0074  Score=45.74  Aligned_cols=20  Identities=25%  Similarity=0.504  Sum_probs=17.8

Q ss_pred             ceEEEEcCCCCchhHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~   30 (313)
                      -.++++|++||||||+++.+
T Consensus        16 e~v~I~GpSGsGKSTLl~~l   35 (107)
T cd00820          16 VGVLITGDSGIGKTELALEL   35 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHh
Confidence            35799999999999999985

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.79  E-value=0.0066  Score=52.87  Aligned_cols=22  Identities=36%  Similarity=0.607  Sum_probs=18.8

Q ss_pred             EEEEcCCCCchhHHHHHHHHHh
Q psy8318          13 LLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~~~   34 (313)
                      ++++|++||||||++|.+..+.
T Consensus        30 ~vliGpSGsGKTTtLkMINrLi   51 (309)
T COG1125          30 LVLIGPSGSGKTTTLKMINRLI   51 (309)
T ss_pred             EEEECCCCCcHHHHHHHHhccc
Confidence            5789999999999999985443

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=95.74  E-value=0.0067  Score=49.50  Aligned_cols=21  Identities=38%  Similarity=0.564  Sum_probs=18.3

Q ss_pred             EEEEcCCCCchhHHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~~   33 (313)
                      |++.|.+||||||+.+.+...
T Consensus         1 i~l~G~~GsGKSTla~~l~~~   21 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHR   21 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHh
Confidence            578999999999999998543

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=95.73  E-value=0.0076  Score=48.41  Aligned_cols=20  Identities=35%  Similarity=0.579  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~   32 (313)
                      +++.|.+||||||+.+++.-
T Consensus         2 i~l~G~~GsGKST~a~~l~~   21 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAE   21 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHh
Confidence            68999999999999999753

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PLN02200 adenylate kinase family protein

Probab=95.71  E-value=0.0098  Score=51.86  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=21.0

Q ss_pred             ccceEEEEcCCCCchhHHHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r~~   33 (313)
                      ....|+++|.+||||||+.+.+.--
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~   66 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVET   66 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999998533

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=95.70  E-value=0.0085  Score=46.43  Aligned_cols=20  Identities=30%  Similarity=0.634  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+++.|++||||||+++.+-
T Consensus         4 ~~~l~G~~G~GKTtl~~~l~   23 (148)
T smart00382        4 VILIVGPPGSGKTTLARALA   23 (148)
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            68999999999999999873

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=95.68  E-value=0.0075  Score=55.10  Aligned_cols=19  Identities=37%  Similarity=0.721  Sum_probs=17.1

Q ss_pred             EEEEcCCCCchhHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r   31 (313)
                      +++||++||||||+++-+-
T Consensus        32 ~vllGPSGcGKSTlLr~IA   50 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIA   50 (338)
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7899999999999988764

>KOG0465|consensus

Probab=95.65  E-value=0.068  Score=51.88  Aligned_cols=76  Identities=14%  Similarity=0.232  Sum_probs=52.5

Q ss_pred             EEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318         163 ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII  242 (313)
Q Consensus       163 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii  242 (313)
                      -..+.+++.+++++||+|+-.|..--...++--|+.+.|+|...           --...+...+.++..    .++|.+
T Consensus        96 At~~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~-----------GVqsQt~tV~rQ~~r----y~vP~i  160 (721)
T KOG0465|consen   96 ATYFTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVA-----------GVESQTETVWRQMKR----YNVPRI  160 (721)
T ss_pred             eeeeeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEccc-----------ceehhhHHHHHHHHh----cCCCeE
Confidence            34567789999999999997765444445666777777777664           222334455555533    368999


Q ss_pred             EEeecCCcccc
Q psy8318         243 LFLNKNDLFQE  253 (313)
Q Consensus       243 lv~NK~Dl~~~  253 (313)
                      -+.||+|..++
T Consensus       161 ~FiNKmDRmGa  171 (721)
T KOG0465|consen  161 CFINKMDRMGA  171 (721)
T ss_pred             EEEehhhhcCC
Confidence            99999997653

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.64  E-value=0.009  Score=49.69  Aligned_cols=20  Identities=40%  Similarity=0.561  Sum_probs=17.8

Q ss_pred             ceEEEEcCCCCchhHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~   30 (313)
                      -.+.++|++|||||||++-+
T Consensus        22 ~~~~l~G~nG~GKSTLl~~i   41 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEG   41 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999865

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=95.64  E-value=0.0088  Score=51.03  Aligned_cols=26  Identities=19%  Similarity=0.327  Sum_probs=22.0

Q ss_pred             hccceEEEEcCCCCchhHHHHHHHHH
Q psy8318           8 EREVKLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus         8 ~~~~killlG~~~sGKst~~kq~r~~   33 (313)
                      .+...|.+.|.+|||||||++.+.-.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            35678999999999999999998543

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=95.63  E-value=0.0084  Score=50.91  Aligned_cols=20  Identities=35%  Similarity=0.616  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -++++|++|||||||+|++.
T Consensus        27 ~~~ltGpNg~GKSTllr~i~   46 (199)
T cd03283          27 GILITGSNMSGKSTFLRTIG   46 (199)
T ss_pred             EEEEECCCCCChHHHHHHHH
Confidence            46899999999999999974

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.59  E-value=0.011  Score=48.95  Aligned_cols=24  Identities=25%  Similarity=0.562  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHhc
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~~   35 (313)
                      =|-++|++|||||||++-+..+..
T Consensus        34 VisIIGsSGSGKSTfLRCiN~LE~   57 (256)
T COG4598          34 VISIIGSSGSGKSTFLRCINFLEK   57 (256)
T ss_pred             EEEEecCCCCchhHHHHHHHhhcC
Confidence            356899999999999999877654

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.59  E-value=0.009  Score=51.44  Aligned_cols=20  Identities=30%  Similarity=0.511  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+.++|++|||||||++-+-
T Consensus        33 ~vaI~GpSGSGKSTLLniig   52 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLG   52 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            47899999999999998864

>TIGR03263 guanyl_kin guanylate kinase

Probab=95.57  E-value=0.0093  Score=49.44  Aligned_cols=20  Identities=35%  Similarity=0.552  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .++++|++||||||+++.+.
T Consensus         3 ii~l~G~~GsGKsTl~~~L~   22 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALL   22 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK14529 adenylate kinase; Provisional

Probab=95.56  E-value=0.012  Score=50.76  Aligned_cols=25  Identities=28%  Similarity=0.392  Sum_probs=21.1

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~~   35 (313)
                      ++|+++|++||||||..+.+...++
T Consensus         1 m~I~l~G~PGsGK~T~a~~La~~~~   25 (223)
T PRK14529          1 MNILIFGPNGSGKGTQGALVKKKYD   25 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Confidence            3799999999999999999855443

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.56  E-value=0.01  Score=50.35  Aligned_cols=22  Identities=27%  Similarity=0.594  Sum_probs=19.0

Q ss_pred             EEEcCCCCchhHHHHHHHHHhc
Q psy8318          14 LLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        14 lllG~~~sGKst~~kq~r~~~~   35 (313)
                      .++|++|||||||++-+..++.
T Consensus        37 AlIGPSGcGKST~LR~lNRmnd   58 (253)
T COG1117          37 ALIGPSGCGKSTLLRCLNRMND   58 (253)
T ss_pred             EEECCCCcCHHHHHHHHHhhcc
Confidence            5899999999999999876653

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=95.55  E-value=0.011  Score=46.01  Aligned_cols=18  Identities=33%  Similarity=0.684  Sum_probs=17.0

Q ss_pred             EEEEcCCCCchhHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        13 illlG~~~sGKst~~kq~   30 (313)
                      ||+.|++|+||||+++.+
T Consensus         1 ill~G~~G~GKT~l~~~l   18 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARAL   18 (132)
T ss_dssp             EEEESSTTSSHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHH
Confidence            689999999999999987

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=95.54  E-value=0.014  Score=50.82  Aligned_cols=24  Identities=25%  Similarity=0.635  Sum_probs=20.9

Q ss_pred             hhccceEEEEcCCCCchhHHHHHH
Q psy8318           7 QEREVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus         7 ~~~~~killlG~~~sGKst~~kq~   30 (313)
                      .....|++++|.+||||||+++-+
T Consensus        10 ~~~~fr~viIG~sGSGKT~li~~l   33 (241)
T PF04665_consen   10 LKDPFRMVIIGKSGSGKTTLIKSL   33 (241)
T ss_pred             cCCCceEEEECCCCCCHHHHHHHH
Confidence            445789999999999999988876

This is thought to be an ATPase involved in viral DNA packaging [].

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=95.54  E-value=0.041  Score=47.58  Aligned_cols=50  Identities=16%  Similarity=0.219  Sum_probs=31.9

Q ss_pred             eecceeEEEEEe---cCceeeeEecCCCccc------cccccccccC--CcEEEEEEecCC
Q psy8318         157 KTTGIIETHFTF---KDLHFKMFDVGGQRSE------RKKWIHCFEG--VTAIIFCVALSG  206 (313)
Q Consensus       157 ~T~g~~~~~~~~---~~~~~~i~D~~Gq~~~------r~~w~~~~~~--~~~iifv~dls~  206 (313)
                      .|.|+.......   ++..+.+.||+|....      ...+...+..  ++.+||.++...
T Consensus        43 ~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~  103 (224)
T cd01851          43 TTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI  103 (224)
T ss_pred             CccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence            455665554444   3578999999996432      2223334444  788998888765

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PRK00300 gmk guanylate kinase; Provisional

Probab=95.52  E-value=0.0097  Score=50.48  Aligned_cols=22  Identities=36%  Similarity=0.539  Sum_probs=19.2

Q ss_pred             ceEEEEcCCCCchhHHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~   32 (313)
                      --|+++|++||||||+++.+.-
T Consensus         6 ~~i~i~G~sGsGKstl~~~l~~   27 (205)
T PRK00300          6 LLIVLSGPSGAGKSTLVKALLE   27 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999843

>PF13173 AAA_14: AAA domain

Probab=95.52  E-value=0.011  Score=46.39  Aligned_cols=19  Identities=37%  Similarity=0.656  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      -+++.|+.+|||||+++|+
T Consensus         4 ~~~l~G~R~vGKTtll~~~   22 (128)
T PF13173_consen    4 IIILTGPRGVGKTTLLKQL   22 (128)
T ss_pred             eEEEECCCCCCHHHHHHHH
Confidence            3689999999999999997

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=95.51  E-value=0.012  Score=53.85  Aligned_cols=29  Identities=28%  Similarity=0.494  Sum_probs=24.7

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHhcCCCC
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIHETGYS   39 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~~~~~~   39 (313)
                      -+|+++|++||||||+++.+-..++..+.
T Consensus       163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v  191 (325)
T TIGR01526       163 KTVAILGGESTGKSTLVNKLAAVFNTTSA  191 (325)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence            48999999999999999999777666653

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=95.51  E-value=0.011  Score=48.35  Aligned_cols=21  Identities=24%  Similarity=0.483  Sum_probs=19.6

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      ++|++-|++|+||||++++++
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH
Confidence            378999999999999999998

>PRK14528 adenylate kinase; Provisional

Probab=95.51  E-value=0.013  Score=49.11  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      +|+++|++||||||+.+.+.--+
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~   25 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERL   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            78999999999999999985444

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.50  E-value=0.078  Score=51.40  Aligned_cols=21  Identities=24%  Similarity=0.444  Sum_probs=18.2

Q ss_pred             cceEEEEcCCCCchhHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~   30 (313)
                      .-.++++|.+|+||||++..+
T Consensus       350 G~vIaLVGPtGvGKTTtaakL  370 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKL  370 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHH
Confidence            447789999999999999876

>TIGR00235 udk uridine kinase

Probab=95.50  E-value=0.01  Score=50.68  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=19.3

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~   33 (313)
                      .-|.+.|.+|||||||++.+.-+
T Consensus         7 ~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         7 IIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            45779999999999999998543

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=95.47  E-value=0.014  Score=49.29  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=18.9

Q ss_pred             EEEEcCCCCchhHHHHHHHHHh
Q psy8318          13 LLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~~~   34 (313)
                      |.+.|++||||||+.+.+.-+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999986544

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK06762 hypothetical protein; Provisional

Probab=95.47  E-value=0.014  Score=47.71  Aligned_cols=23  Identities=35%  Similarity=0.484  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      -|++.|.+||||||+.+.+.-.+
T Consensus         4 li~i~G~~GsGKST~A~~L~~~l   26 (166)
T PRK06762          4 LIIIRGNSGSGKTTIAKQLQERL   26 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999985444

>PRK13695 putative NTPase; Provisional

Probab=95.45  E-value=0.012  Score=48.78  Aligned_cols=20  Identities=30%  Similarity=0.502  Sum_probs=18.4

Q ss_pred             ceEEEEcCCCCchhHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~   30 (313)
                      +|+++.|.+|||||||++.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i   20 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKI   20 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            48999999999999999975

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=95.43  E-value=0.011  Score=50.24  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=19.2

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      -++++.|++||||||+++.+.
T Consensus        30 ~~~~l~G~Ng~GKStll~~i~   50 (202)
T cd03243          30 RLLLITGPNMGGKSTYLRSIG   50 (202)
T ss_pred             eEEEEECCCCCccHHHHHHHH
Confidence            378999999999999999985

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK14526 adenylate kinase; Provisional

Probab=95.42  E-value=0.012  Score=50.51  Aligned_cols=21  Identities=48%  Similarity=0.703  Sum_probs=18.9

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      ++|+++|++||||||+++.+-
T Consensus         1 m~i~l~G~pGsGKsT~a~~La   21 (211)
T PRK14526          1 MKLVFLGPPGSGKGTIAKILS   21 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999999874

>TIGR00092 GTP-binding protein YchF

Probab=95.42  E-value=0.1  Score=48.35  Aligned_cols=37  Identities=16%  Similarity=0.175  Sum_probs=26.6

Q ss_pred             eeeeEecCCCcc-------ccccccccccCCcEEEEEEecCCcc
Q psy8318         172 HFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSGYD  208 (313)
Q Consensus       172 ~~~i~D~~Gq~~-------~r~~w~~~~~~~~~iifv~dls~~d  208 (313)
                      .+.+.|++|-..       .........+.+++++.|++..+-+
T Consensus        68 ~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~d~  111 (368)
T TIGR00092        68 TTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFEDD  111 (368)
T ss_pred             eEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCCCc
Confidence            457778988532       3335566789999999999987533

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG3347|consensus

Probab=95.40  E-value=0.012  Score=47.05  Aligned_cols=24  Identities=25%  Similarity=0.505  Sum_probs=21.4

Q ss_pred             hccceEEEEcCCCCchhHHHHHHH
Q psy8318           8 EREVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus         8 ~~~~killlG~~~sGKst~~kq~r   31 (313)
                      +...+||+-|++|+||||+..|+.
T Consensus         5 r~~PNILvtGTPG~GKstl~~~la   28 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLA   28 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHH
Confidence            456699999999999999999974

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.39  E-value=0.012  Score=51.16  Aligned_cols=19  Identities=32%  Similarity=0.586  Sum_probs=16.6

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      -|.+||++||||||+++-+
T Consensus        31 fvsilGpSGcGKSTLLrii   49 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLI   49 (248)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3679999999999998765

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=95.37  E-value=0.012  Score=54.36  Aligned_cols=39  Identities=31%  Similarity=0.439  Sum_probs=29.0

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh----------cCCCChHHHhhhHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH----------ETGYSKEECEQYRPVV   50 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~----------~~~~~~~e~~~~~~~I   50 (313)
                      =|.++|.+|||||||++-+-=+|          +++.+.+.+..||..+
T Consensus       351 lvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~Lf  399 (546)
T COG4615         351 LVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLF  399 (546)
T ss_pred             EEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHH
Confidence            37799999999999999875334          3456667777777653

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.34  E-value=0.011  Score=54.21  Aligned_cols=19  Identities=32%  Similarity=0.655  Sum_probs=16.4

Q ss_pred             EEEEcCCCCchhHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r   31 (313)
                      +-+||++||||||+++.+-
T Consensus        34 ~~lLGPSGcGKTTlLR~IA   52 (352)
T COG3842          34 VTLLGPSGCGKTTLLRMIA   52 (352)
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4599999999999988753

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=95.33  E-value=0.033  Score=45.40  Aligned_cols=65  Identities=15%  Similarity=0.194  Sum_probs=42.8

Q ss_pred             CceeeeEecCCCc----cccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEe
Q psy8318         170 DLHFKMFDVGGQR----SERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFL  245 (313)
Q Consensus       170 ~~~~~i~D~~Gq~----~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~  245 (313)
                      ...+.++|++|-.    .....|..|+..++++|||++.+.          .-.-. ....+.+....   ....+++|.
T Consensus       100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~----------~~~~~-~~~~l~~~~~~---~~~~~i~V~  165 (168)
T PF00350_consen  100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQ----------DLTES-DMEFLKQMLDP---DKSRTIFVL  165 (168)
T ss_dssp             SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTS----------TGGGH-HHHHHHHHHTT---TCSSEEEEE
T ss_pred             ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCc----------ccchH-HHHHHHHHhcC---CCCeEEEEE
Confidence            4678999999963    234678889999999999999886          22222 23334444332   233488999


Q ss_pred             ecC
Q psy8318         246 NKN  248 (313)
Q Consensus       246 NK~  248 (313)
                      ||.
T Consensus       166 nk~  168 (168)
T PF00350_consen  166 NKA  168 (168)
T ss_dssp             E-G
T ss_pred             cCC
Confidence            984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=95.31  E-value=0.16  Score=40.24  Aligned_cols=65  Identities=11%  Similarity=0.231  Sum_probs=45.7

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      ..+.++|+++...  ......+..+|.++++++.+.           .++......++.+.+..  ...++.++.|+.+-
T Consensus        45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~-----------~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~  109 (139)
T cd02038          45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEP-----------TSITDAYALIKKLAKQL--RVLNFRVVVNRAES  109 (139)
T ss_pred             CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCCh-----------hHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence            5688999998543  233456888999999999884           66666666666554322  34578899999973

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=95.31  E-value=0.012  Score=51.64  Aligned_cols=19  Identities=42%  Similarity=0.564  Sum_probs=16.9

Q ss_pred             EEEEcCCCCchhHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r   31 (313)
                      +.++|++||||||++|-+-
T Consensus        31 ~~iiGpNG~GKSTLLk~l~   49 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLA   49 (258)
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4689999999999999873

>PF05729 NACHT: NACHT domain

Probab=95.29  E-value=0.013  Score=47.36  Aligned_cols=18  Identities=39%  Similarity=0.676  Sum_probs=16.6

Q ss_pred             EEEEcCCCCchhHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        13 illlG~~~sGKst~~kq~   30 (313)
                      +++.|.+|+||||+++.+
T Consensus         3 l~I~G~~G~GKStll~~~   20 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKL   20 (166)
T ss_pred             EEEECCCCCChHHHHHHH
Confidence            689999999999999886

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=95.28  E-value=0.014  Score=48.33  Aligned_cols=21  Identities=38%  Similarity=0.574  Sum_probs=19.0

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      .+|+++|.+||||||+.+.+-
T Consensus         5 ~~I~liG~~GaGKStl~~~La   25 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLA   25 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHH
Confidence            379999999999999999974

>PRK00131 aroK shikimate kinase; Reviewed

Probab=95.24  E-value=0.019  Score=47.05  Aligned_cols=24  Identities=29%  Similarity=0.332  Sum_probs=20.2

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~   34 (313)
                      ..|++.|.+||||||+.+.+.-..
T Consensus         5 ~~i~l~G~~GsGKstla~~La~~l   28 (175)
T PRK00131          5 PNIVLIGFMGAGKSTIGRLLAKRL   28 (175)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHh
Confidence            478999999999999999985433

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=95.23  E-value=0.013  Score=50.56  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=18.3

Q ss_pred             EEEEcCCCCchhHHHHHHHHHh
Q psy8318          13 LLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~~~   34 (313)
                      |-+.|++|||||||++.+.-..
T Consensus         2 igI~G~sGSGKTTla~~L~~~l   23 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALL   23 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHH
Confidence            4688999999999999986443

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK14527 adenylate kinase; Provisional

Probab=95.21  E-value=0.014  Score=49.01  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=19.6

Q ss_pred             cceEEEEcCCCCchhHHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~   32 (313)
                      ..-|+++|++||||||+.+++.-
T Consensus         6 ~~~i~i~G~pGsGKsT~a~~La~   28 (191)
T PRK14527          6 NKVVIFLGPPGAGKGTQAERLAQ   28 (191)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999743

>PRK14738 gmk guanylate kinase; Provisional

Probab=95.20  E-value=0.015  Score=49.63  Aligned_cols=23  Identities=17%  Similarity=0.517  Sum_probs=19.6

Q ss_pred             ccceEEEEcCCCCchhHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r   31 (313)
                      +..-++++|++||||||+++++.
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~   34 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMR   34 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHH
Confidence            44567889999999999999974

>PRK06547 hypothetical protein; Provisional

Probab=95.15  E-value=0.017  Score=47.87  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=19.7

Q ss_pred             hccceEEEEcCCCCchhHHHHHHH
Q psy8318           8 EREVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus         8 ~~~~killlG~~~sGKst~~kq~r   31 (313)
                      .+...|++.|.+||||||+.+.+.
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~   36 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALA   36 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345677777999999999999873

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=95.13  E-value=0.015  Score=48.33  Aligned_cols=19  Identities=32%  Similarity=0.524  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        27 ~~~l~G~nGsGKSTLl~~l   45 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKIL   45 (177)
T ss_pred             EEEEECCCCChHHHHHHHH
Confidence            6789999999999998875

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.12  E-value=0.016  Score=50.45  Aligned_cols=22  Identities=41%  Similarity=0.706  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCchhHHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~   33 (313)
                      .++++|.+||||||+++.+--+
T Consensus        32 ~~~i~G~nGsGKSTL~~~l~GL   53 (235)
T COG1122          32 RVLLIGPNGSGKSTLLKLLNGL   53 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHcCc
Confidence            6899999999999999997533

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=95.11  E-value=0.021  Score=48.97  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=19.7

Q ss_pred             EEEEcCCCCchhHHHHHHHHHhc
Q psy8318          13 LLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~~~~   35 (313)
                      +.++|++||||||+++.+..+.+
T Consensus        28 ~~ivGpNGaGKSTll~~i~~~~G   50 (212)
T cd03274          28 SAIVGPNGSGKSNVIDSMLFVFG   50 (212)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            56999999999999999875554

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.08  E-value=0.017  Score=45.65  Aligned_cols=20  Identities=30%  Similarity=0.672  Sum_probs=18.1

Q ss_pred             EEEEcCCCCchhHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~   32 (313)
                      |++.|.+|+|||++++++-.
T Consensus         2 vlL~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            79999999999999999743

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.07  E-value=0.016  Score=49.83  Aligned_cols=22  Identities=23%  Similarity=0.551  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCchhHHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~   33 (313)
                      -|.++|.+|||||||+|-+.-+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lngl   53 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNGL   53 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            5889999999999999987533

>PLN02674 adenylate kinase

Probab=95.07  E-value=0.021  Score=50.01  Aligned_cols=26  Identities=31%  Similarity=0.353  Sum_probs=22.0

Q ss_pred             ccceEEEEcCCCCchhHHHHHHHHHh
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r~~~   34 (313)
                      ...+|+++|++||||+|+.+.+.--+
T Consensus        30 ~~~~i~l~G~PGsGKgT~a~~La~~~   55 (244)
T PLN02674         30 PDKRLILIGPPGSGKGTQSPIIKDEY   55 (244)
T ss_pred             cCceEEEECCCCCCHHHHHHHHHHHc
Confidence            35789999999999999999985444

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=95.06  E-value=0.017  Score=46.52  Aligned_cols=21  Identities=38%  Similarity=0.514  Sum_probs=18.2

Q ss_pred             EEEEcCCCCchhHHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~~   33 (313)
                      |++.|.+||||||+.+.+.-.
T Consensus         2 i~i~G~~GsGKSTla~~L~~~   22 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEK   22 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            689999999999999998543

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK13947 shikimate kinase; Provisional

Probab=95.06  E-value=0.022  Score=46.74  Aligned_cols=26  Identities=27%  Similarity=0.446  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHhcCC
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIHETG   37 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~~~~   37 (313)
                      +|+++|.+||||||+.+.+.-..+-+
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~   28 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFG   28 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence            68999999999999999985433333

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=95.05  E-value=0.017  Score=50.75  Aligned_cols=20  Identities=35%  Similarity=0.501  Sum_probs=18.2

Q ss_pred             EEEEcCCCCchhHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~   32 (313)
                      |++.|.+||||||+.+++..
T Consensus         2 Ivl~G~pGSGKST~a~~La~   21 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAK   21 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            68999999999999999854

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=95.05  E-value=0.018  Score=49.24  Aligned_cols=20  Identities=35%  Similarity=0.584  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+.++|.+|||||||++-+-
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~   48 (214)
T cd03292          29 FVFLVGPSGAGKSTLLKLIY   48 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            57899999999999988863

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=95.04  E-value=0.018  Score=47.93  Aligned_cols=21  Identities=29%  Similarity=0.406  Sum_probs=18.4

Q ss_pred             EEEEcCCCCchhHHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~~   33 (313)
                      |.+.|.+|||||||.+++.-.
T Consensus         2 i~i~G~sgsGKttla~~l~~~   22 (179)
T cd02028           2 VGIAGPSGSGKTTFAKKLSNQ   22 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999998644

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=95.02  E-value=0.02  Score=46.80  Aligned_cols=20  Identities=30%  Similarity=0.566  Sum_probs=18.1

Q ss_pred             ceEEEEcCCCCchhHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~   30 (313)
                      -.++++|.+|+|||||++.+
T Consensus        36 k~~vl~G~SGvGKSSLiN~L   55 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINAL   55 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            46789999999999999996

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.01  E-value=0.018  Score=48.86  Aligned_cols=19  Identities=32%  Similarity=0.525  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        28 ~~~i~G~nGsGKSTLl~~l   46 (205)
T cd03226          28 IIALTGKNGAGKTTLAKIL   46 (205)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6889999999999999886

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd01858 NGP_1 NGP-1

Probab=95.00  E-value=0.02  Score=46.48  Aligned_cols=23  Identities=22%  Similarity=0.572  Sum_probs=20.4

Q ss_pred             ccceEEEEcCCCCchhHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r   31 (313)
                      ..+++.++|.+|+|||||++.|.
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~  123 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLR  123 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHh
Confidence            46788999999999999999973

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=95.00  E-value=0.018  Score=49.31  Aligned_cols=19  Identities=32%  Similarity=0.552  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        32 ~~~l~G~nGsGKSTLl~~i   50 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNIL   50 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHH
Confidence            6789999999999999886

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=95.00  E-value=0.018  Score=49.25  Aligned_cols=20  Identities=35%  Similarity=0.567  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+.++|.+|||||||++-+-
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~   50 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLIL   50 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            67899999999999998863

>PRK14737 gmk guanylate kinase; Provisional

Probab=94.99  E-value=0.018  Score=48.28  Aligned_cols=20  Identities=25%  Similarity=0.461  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      =|+|+|++||||||+.+++.
T Consensus         6 ~ivl~GpsG~GK~tl~~~l~   25 (186)
T PRK14737          6 LFIISSVAGGGKSTIIQALL   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37899999999999999984

>PRK05541 adenylylsulfate kinase; Provisional

Probab=94.98  E-value=0.019  Score=47.49  Aligned_cols=24  Identities=29%  Similarity=0.400  Sum_probs=20.6

Q ss_pred             hccceEEEEcCCCCchhHHHHHHH
Q psy8318           8 EREVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus         8 ~~~~killlG~~~sGKst~~kq~r   31 (313)
                      ++..-|++.|.+||||||+.+.+.
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~   28 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALY   28 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHH
Confidence            355678999999999999999874

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=94.97  E-value=0.019  Score=49.91  Aligned_cols=19  Identities=26%  Similarity=0.429  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        28 ~~~l~G~nGsGKSTLl~~l   46 (236)
T cd03219          28 IHGLIGPNGAGKTTLFNLI   46 (236)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999886

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=94.96  E-value=0.024  Score=45.46  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      .|+++|.+||||||+.+.+.-..
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l   23 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKAL   23 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHh
Confidence            47999999999999999985433

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=94.96  E-value=0.021  Score=53.80  Aligned_cols=32  Identities=31%  Similarity=0.334  Sum_probs=25.2

Q ss_pred             hhccceEEEEcCCCCchhHHHHHHHHHhcCCC
Q psy8318           7 QEREVKLLLLGAGESGKSTIVKQMKIIHETGY   38 (313)
Q Consensus         7 ~~~~~killlG~~~sGKst~~kq~r~~~~~~~   38 (313)
                      .....+|+++|++|||||||++.|-..++..+
T Consensus       216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~  247 (399)
T PRK08099        216 PFFVRTVAILGGESSGKSTLVNKLANIFNTTS  247 (399)
T ss_pred             hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence            34456899999999999999999866555443

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=94.95  E-value=0.018  Score=52.03  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      -|++.|.+||||||+.+++..-+
T Consensus         4 liil~G~pGSGKSTla~~L~~~~   26 (300)
T PHA02530          4 IILTVGVPGSGKSTWAREFAAKN   26 (300)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHC
Confidence            46788999999999999975433

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.95  E-value=0.019  Score=48.19  Aligned_cols=19  Identities=26%  Similarity=0.597  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      -|++||++||||||+++-+
T Consensus        33 ~vv~lGpSGcGKTTLLnl~   51 (259)
T COG4525          33 LVVVLGPSGCGKTTLLNLI   51 (259)
T ss_pred             EEEEEcCCCccHHHHHHHH
Confidence            5899999999999998875

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=94.95  E-value=0.02  Score=48.61  Aligned_cols=20  Identities=25%  Similarity=0.513  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+++.|++|||||||+|++-
T Consensus        30 ~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          30 VLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             EEEEECCCCCChHHHHHHHH
Confidence            48999999999999999975

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=94.92  E-value=0.019  Score=48.96  Aligned_cols=20  Identities=30%  Similarity=0.521  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+.++|.+|||||||++-+-
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~   46 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILA   46 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHh
Confidence            78999999999999998873

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK04182 cytidylate kinase; Provisional

Probab=94.91  E-value=0.021  Score=47.12  Aligned_cols=20  Identities=25%  Similarity=0.456  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .|++.|.+||||||+.+.+-
T Consensus         2 ~I~i~G~~GsGKstia~~la   21 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLA   21 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999984

>COG1162 Predicted GTPases [General function prediction only]

Probab=94.91  E-value=0.066  Score=48.00  Aligned_cols=89  Identities=17%  Similarity=0.202  Sum_probs=56.3

Q ss_pred             ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCC
Q psy8318         192 FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQK  271 (313)
Q Consensus       192 ~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~  271 (313)
                      ..+++-+++|+++.+      .+.+.+.++..+-..+.       .++..+|++||+|+..+.-.. . .+....| ...
T Consensus        77 v~n~d~~iiIvs~~~------P~~~~~~ldR~Lv~ae~-------~gi~pvIvlnK~DL~~~~~~~-~-~~~~~~y-~~~  140 (301)
T COG1162          77 VANNDQAIIVVSLVD------PDFNTNLLDRYLVLAEA-------GGIEPVIVLNKIDLLDDEEAA-V-KELLREY-EDI  140 (301)
T ss_pred             ccccceEEEEEeccC------CCCCHHHHHHHHHHHHH-------cCCcEEEEEEccccCcchHHH-H-HHHHHHH-HhC
Confidence            445777888888886      12224444444433332       456667779999987642111 1 2233334 446


Q ss_pred             CeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         272 EIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       272 ~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      +...+.+||++++++.++..++...
T Consensus       141 gy~v~~~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         141 GYPVLFVSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             CeeEEEecCcCcccHHHHHHHhcCC
Confidence            7789999999999999988877643

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=94.91  E-value=0.02  Score=48.05  Aligned_cols=19  Identities=47%  Similarity=0.698  Sum_probs=17.3

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        20 ~~~i~G~nGsGKSTLl~~i   38 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHL   38 (190)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999876

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=94.90  E-value=0.027  Score=46.36  Aligned_cols=28  Identities=25%  Similarity=0.398  Sum_probs=22.0

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHhcCCC
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIHETGY   38 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~~~~~   38 (313)
                      .+|+|+|..||||||+-|++-.--+-+|
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F   30 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPF   30 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence            3799999999999999999843333444

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=94.89  E-value=0.021  Score=47.37  Aligned_cols=19  Identities=47%  Similarity=0.744  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++.+
T Consensus        30 ~~~i~G~nGsGKStLl~~l   48 (178)
T cd03247          30 KIALLGRSGSGKSTLLQLL   48 (178)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999986

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=94.88  E-value=0.021  Score=49.12  Aligned_cols=19  Identities=37%  Similarity=0.569  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        28 ~~~i~G~nGsGKSTLl~~i   46 (220)
T cd03265          28 IFGLLGPNGAGKTTTIKML   46 (220)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999886

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN02459 probable adenylate kinase

Probab=94.88  E-value=0.027  Score=49.72  Aligned_cols=26  Identities=23%  Similarity=0.392  Sum_probs=21.7

Q ss_pred             cceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~~~~   35 (313)
                      .++++++|++||||||+.+.+---++
T Consensus        29 ~~~ii~~G~PGsGK~T~a~~la~~~~   54 (261)
T PLN02459         29 NVNWVFLGCPGVGKGTYASRLSKLLG   54 (261)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999854443

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=94.87  E-value=0.02  Score=49.10  Aligned_cols=20  Identities=30%  Similarity=0.438  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+.++|.+|||||||++-+-
T Consensus        15 ~~~l~G~NGsGKSTLlk~i~   34 (213)
T PRK15177         15 HIGILAAPGSGKTTLTRLLC   34 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            67899999999999998863

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=94.87  E-value=0.021  Score=44.57  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=19.2

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      .--+++.|.+|+||||+++.+-
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~   40 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIA   40 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            4468999999999999999974

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=94.87  E-value=0.021  Score=48.77  Aligned_cols=19  Identities=37%  Similarity=0.634  Sum_probs=17.3

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        28 ~~~i~G~nGsGKSTLl~~l   46 (213)
T cd03259          28 FLALLGPSGCGKTTLLRLI   46 (213)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999876

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=94.86  E-value=0.032  Score=45.27  Aligned_cols=31  Identities=29%  Similarity=0.582  Sum_probs=24.0

Q ss_pred             hccceEEEEcCCCCchhHHHHHHH-HHhcCCC
Q psy8318           8 EREVKLLLLGAGESGKSTIVKQMK-IIHETGY   38 (313)
Q Consensus         8 ~~~~killlG~~~sGKst~~kq~r-~~~~~~~   38 (313)
                      +..+||.+-|.+||||||+++.+. .+...+|
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~   34 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGY   34 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcCc
Confidence            346799999999999999998874 3444444

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=94.86  E-value=0.021  Score=48.63  Aligned_cols=20  Identities=30%  Similarity=0.492  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+.++|.+|||||||++-+-
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~   47 (210)
T cd03269          28 IFGLLGPNGAGKTTTIRMIL   47 (210)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            57899999999999988863

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=94.85  E-value=0.021  Score=48.75  Aligned_cols=19  Identities=37%  Similarity=0.628  Sum_probs=17.3

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        30 ~~~l~G~nGsGKSTLl~~i   48 (214)
T TIGR02673        30 FLFLTGPSGAGKTTLLKLL   48 (214)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6789999999999999876

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.83  E-value=0.022  Score=48.86  Aligned_cols=20  Identities=30%  Similarity=0.614  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+.++|.+|||||||++-+-
T Consensus        39 ~~~i~G~nGsGKSTLl~~i~   58 (214)
T PRK13543         39 ALLVQGDNGAGKTTLLRVLA   58 (214)
T ss_pred             EEEEEcCCCCCHHHHHHHHh
Confidence            68899999999999999873

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=94.83  E-value=0.023  Score=47.32  Aligned_cols=19  Identities=37%  Similarity=0.611  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        27 ~~~l~G~nGsGKStLl~~i   45 (180)
T cd03214          27 IVGILGPNGAGKSTLLKTL   45 (180)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6889999999999998876

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=94.82  E-value=0.022  Score=48.84  Aligned_cols=20  Identities=30%  Similarity=0.456  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+.++|.+|||||||++-+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~   52 (218)
T cd03266          33 VTGLLGPNGAGKTTTLRMLA   52 (218)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            67899999999999998863

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=94.82  E-value=0.022  Score=48.58  Aligned_cols=19  Identities=32%  Similarity=0.669  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        28 ~~~l~G~nGsGKSTLl~~l   46 (213)
T cd03262          28 VVVIIGPSGSGKSTLLRCI   46 (213)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6789999999999998886

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=94.82  E-value=0.023  Score=46.65  Aligned_cols=19  Identities=32%  Similarity=0.735  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        29 ~~~i~G~nGsGKSTLl~~l   47 (166)
T cd03223          29 RLLITGPSGTGKSSLFRAL   47 (166)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999998886

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=94.79  E-value=0.022  Score=49.27  Aligned_cols=19  Identities=32%  Similarity=0.415  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        28 ~~~l~G~nGsGKSTLl~~l   46 (232)
T cd03218          28 IVGLLGPNGAGKTTTFYMI   46 (232)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6789999999999998886

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>KOG0057|consensus

Probab=94.78  E-value=0.025  Score=54.21  Aligned_cols=25  Identities=32%  Similarity=0.525  Sum_probs=21.1

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~~   35 (313)
                      =||.++|++|||||||++.+=.++.
T Consensus       379 ekVaIvG~nGsGKSTilr~LlrF~d  403 (591)
T KOG0057|consen  379 EKVAIVGSNGSGKSTILRLLLRFFD  403 (591)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3899999999999999998754543

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=94.78  E-value=0.022  Score=49.66  Aligned_cols=19  Identities=26%  Similarity=0.569  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        30 ~~~l~G~nGsGKSTLl~~l   48 (243)
T TIGR02315        30 FVAIIGPSGAGKSTLLRCI   48 (243)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6789999999999998876

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=94.78  E-value=0.022  Score=47.79  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchhHHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~~   33 (313)
                      |.+-|.+||||||+.+++...
T Consensus         2 i~i~G~sgsGKTtla~~l~~~   22 (187)
T cd02024           2 VGISGVTNSGKTTLAKLLQRI   22 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            568899999999999998543

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.77  E-value=0.023  Score=48.07  Aligned_cols=19  Identities=37%  Similarity=0.576  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        29 ~~~l~G~nGsGKSTLl~~i   47 (200)
T PRK13540         29 LLHLKGSNGAGKTTLLKLI   47 (200)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6889999999999999876

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=94.77  E-value=0.024  Score=46.82  Aligned_cols=19  Identities=37%  Similarity=0.572  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        28 ~~~i~G~nGsGKStLl~~l   46 (173)
T cd03230          28 IYGLLGPNGAGKTTLIKII   46 (173)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6889999999999998875

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=94.77  E-value=0.024  Score=46.36  Aligned_cols=19  Identities=42%  Similarity=0.588  Sum_probs=17.3

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        28 ~~~l~G~nGsGKSTLl~~i   46 (163)
T cd03216          28 VHALLGENGAGKSTLMKIL   46 (163)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6789999999999998875

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=94.76  E-value=0.023  Score=48.47  Aligned_cols=20  Identities=30%  Similarity=0.562  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+.++|.+|||||||++-+-
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~   47 (213)
T cd03301          28 FVVLLGPSGCGKTTTLRMIA   47 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            57899999999999998763

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=94.76  E-value=0.023  Score=48.79  Aligned_cols=19  Identities=32%  Similarity=0.588  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        33 ~~~i~G~nGsGKSTLl~~i   51 (221)
T TIGR02211        33 IVAIVGSSGSGKSTLLHLL   51 (221)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999998886

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=94.75  E-value=0.033  Score=46.95  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=19.1

Q ss_pred             EEEEcCCCCchhHHHHHHHHHhc
Q psy8318          13 LLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~~~~   35 (313)
                      |-+-|++|||||||.+++.....
T Consensus         2 IgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    2 IGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            46789999999999999865544

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=94.74  E-value=0.023  Score=49.33  Aligned_cols=20  Identities=35%  Similarity=0.600  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+.++|.+|||||||++-+-
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~   47 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIV   47 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            57899999999999998863

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=94.74  E-value=0.024  Score=48.11  Aligned_cols=20  Identities=30%  Similarity=0.514  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+.++|.+|||||||++-+-
T Consensus        26 ~~~i~G~nGsGKSTLl~~l~   45 (206)
T TIGR03608        26 MYAIIGESGSGKSTLLNIIG   45 (206)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58899999999999988863

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=94.74  E-value=0.023  Score=48.47  Aligned_cols=19  Identities=37%  Similarity=0.681  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        29 ~~~l~G~nGsGKSTLl~~l   47 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLL   47 (211)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999998876

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=94.74  E-value=0.023  Score=48.15  Aligned_cols=18  Identities=44%  Similarity=0.610  Sum_probs=16.5

Q ss_pred             EEEEcCCCCchhHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        13 illlG~~~sGKst~~kq~   30 (313)
                      +++.|+.||||||+++.+
T Consensus         4 ilI~GptGSGKTTll~~l   21 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAM   21 (198)
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999875

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=94.74  E-value=0.024  Score=48.48  Aligned_cols=19  Identities=37%  Similarity=0.637  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        27 ~~~l~G~nGsGKSTLl~~l   45 (213)
T cd03235          27 FLAIVGPNGAGKSTLLKAI   45 (213)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6789999999999999886

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.73  E-value=0.023  Score=48.29  Aligned_cols=18  Identities=44%  Similarity=0.780  Sum_probs=16.5

Q ss_pred             EEEEcCCCCchhHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        13 illlG~~~sGKst~~kq~   30 (313)
                      +.+||++|+||||++|.+
T Consensus        30 ~ailGPNGAGKSTlLk~L   47 (259)
T COG4559          30 LAILGPNGAGKSTLLKAL   47 (259)
T ss_pred             EEEECCCCccHHHHHHHh
Confidence            568999999999999996

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=94.72  E-value=0.025  Score=46.96  Aligned_cols=19  Identities=42%  Similarity=0.651  Sum_probs=17.3

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        28 ~~~i~G~nGsGKSTLl~~l   46 (178)
T cd03229          28 IVALLGPSGSGKSTLLRCI   46 (178)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5779999999999998886

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08356 hypothetical protein; Provisional

Probab=94.72  E-value=0.023  Score=47.92  Aligned_cols=21  Identities=24%  Similarity=0.377  Sum_probs=18.8

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      ..|++.|++||||||+++.+.
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~   26 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFE   26 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            458899999999999999985

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=94.71  E-value=0.024  Score=47.11  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCchhHHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~   33 (313)
                      .++++|.+||||||+++.+--+
T Consensus         5 ~i~l~G~sGsGKSTl~~~la~~   26 (176)
T PRK09825          5 SYILMGVSGSGKSLIGSKIAAL   26 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999999987433

>PF13479 AAA_24: AAA domain

Probab=94.70  E-value=0.02  Score=49.17  Aligned_cols=22  Identities=32%  Similarity=0.668  Sum_probs=20.5

Q ss_pred             ccceEEEEcCCCCchhHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~   30 (313)
                      +.+|+++.|.+|+||||++..+
T Consensus         2 ~~~~~lIyG~~G~GKTt~a~~~   23 (213)
T PF13479_consen    2 KPIKILIYGPPGSGKTTLAASL   23 (213)
T ss_pred             CceEEEEECCCCCCHHHHHHhC
Confidence            5689999999999999999997

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=94.70  E-value=0.023  Score=49.24  Aligned_cols=20  Identities=25%  Similarity=0.531  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+.++|.+|||||||++-+-
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~   52 (233)
T cd03258          33 IFGIIGRSGAGKSTLIRCIN   52 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            67899999999999999863

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=94.68  E-value=0.025  Score=47.55  Aligned_cols=19  Identities=26%  Similarity=0.522  Sum_probs=17.3

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        35 ~~~l~G~nGsGKSTLl~~l   53 (192)
T cd03232          35 LTALMGESGAGKTTLLDVL   53 (192)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6789999999999998886

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=94.68  E-value=0.025  Score=49.37  Aligned_cols=19  Identities=37%  Similarity=0.546  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        28 ~~~i~G~nGsGKSTLl~~l   46 (243)
T TIGR01978        28 IHAIMGPNGSGKSTLSKTI   46 (243)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6889999999999998886

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=94.67  E-value=0.03  Score=48.06  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=19.5

Q ss_pred             ceEEEEcCCCCchhHHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~   32 (313)
                      -++++.|+++||||||+|++-+
T Consensus        30 ~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          30 SIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             eEEEEECCCCCChHHHHHHHHH
Confidence            4689999999999999999853

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=94.67  E-value=0.024  Score=48.65  Aligned_cols=20  Identities=35%  Similarity=0.502  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+.++|.+|||||||++-+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~   49 (220)
T cd03263          30 IFGLLGHNGAGKTTTLKMLT   49 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            57899999999999988863

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=94.66  E-value=0.024  Score=45.47  Aligned_cols=18  Identities=39%  Similarity=0.702  Sum_probs=16.9

Q ss_pred             EEEEcCCCCchhHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        13 illlG~~~sGKst~~kq~   30 (313)
                      +++.|.+|+||||+++++
T Consensus         2 ~~i~G~~G~GKT~l~~~i   19 (165)
T cd01120           2 ILVFGPTGSGKTTLALQL   19 (165)
T ss_pred             eeEeCCCCCCHHHHHHHH
Confidence            689999999999999997

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	313
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	1e-133
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	1e-132
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	1e-129
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	1e-128
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	1e-123
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	3e-12
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	3e-12
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	9e-12
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-11
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-11
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	2e-11
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	3e-11
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	3e-11
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	4e-11
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	5e-11
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	5e-11
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	4e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-10
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	8e-10
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	8e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	9e-08
2ged_A	193	SR-beta, signal recognition particle receptor beta	5e-06
3llu_A	196	RAS-related GTP-binding protein C; structural geno	8e-06
1nrj_B	218	SR-beta, signal recognition particle receptor beta	8e-06
2fh5_B	214	SR-beta, signal recognition particle receptor beta	4e-05
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	7e-04

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353

 Score =  382 bits (982), Expect = e-133
 Identities = 252/326 (77%), Positives = 273/326 (83%), Gaps = 23/326 (7%)

Query: 5   QWQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRA 64
           +   REVKLLLLGAGESGKSTIVKQMKIIHE GYS+EEC+QY+ VVYSN+IQS++AIIRA
Sbjct: 27  EKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRA 86

Query: 65  MGQLKIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQ 124
           MG+LKIDFGD   AD ARQ F LA AAEEG +T +L  ++KRLW D GVQ CF+RSREYQ
Sbjct: 87  MGRLKIDFGDAARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 146

Query: 125 LNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSE 184
           LNDSAAYYLN LDRI+QPNYIPTQQDVLRTRVKTTGI+ETHFTFKDLHFKMFDVGGQRSE
Sbjct: 147 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSE 206

Query: 185 RKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILF 244
           RKKWIHCFEGVTAIIFCVALS YD VLAEDEEMNRM ESMKLFDSICN+KWF DTSIILF
Sbjct: 207 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 266

Query: 245 LNKNDLFQEKITKSPLTVCFPEYT-----------------------DQKEIYTHFTCAT 281
           LNK DLF+EKI KSPLT+C+PEY                        D KEIYTHFTCAT
Sbjct: 267 LNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCAT 326

Query: 282 DTSNIQFVFDAVTDVIIKANLKDCGI 307
           DT N+QFVFDAVTDVIIK NLKDCG+
Sbjct: 327 DTKNVQFVFDAVTDVIIKNNLKDCGL 352

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327

 Score =  378 bits (971), Expect = e-132
 Identities = 162/324 (50%), Positives = 201/324 (62%), Gaps = 24/324 (7%)

Query: 7   QEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMG 66
             RE+KLLLLG GESGKST +KQM+IIH +GYS E+   +  +VY N   ++ A+IRAM 
Sbjct: 4   ARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMD 63

Query: 67  QLKIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLN 126
            LKI +    N     Q        +        V  +K LW+D G+Q C+ R REYQL+
Sbjct: 64  TLKIPYKYEHN-KAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLS 122

Query: 127 DSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERK 186
           DS  YYLN LDR++ P+Y+PTQQDVLR RV TTGIIE  F  + + F+M DVGGQRSER+
Sbjct: 123 DSTKYYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERR 182

Query: 187 KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLN 246
           KWIHCFE VT+I+F VALS YD VL E +  NRM ES  LF +I    WF ++S+ILFLN
Sbjct: 183 KWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN 242

Query: 247 KNDLFQEKITKSPLTVCFPEYTD-----------------------QKEIYTHFTCATDT 283
           K DL +EKI  S L   FPEY                          K IY+HFTCATDT
Sbjct: 243 KKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT 302

Query: 284 SNIQFVFDAVTDVIIKANLKDCGI 307
            NI+FVF AV D I++ NLK+  +
Sbjct: 303 ENIRFVFAAVKDTILQLNLKEYNL 326

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362

 Score =  372 bits (956), Expect = e-129
 Identities = 133/334 (39%), Positives = 193/334 (57%), Gaps = 31/334 (9%)

Query: 5   QWQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRA 64
           +   R VK+LLLGAGESGKST +KQM+IIH   + +   E++RP +YSN I+ +  ++ A
Sbjct: 28  ERSARLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDA 87

Query: 65  MGQLKIDFGDHKNADCARQFF-------TLASAAEEGDLTPDLVILMKRLWSDQGVQHCF 117
             +L I +GD+KN     +           A    E  +    +  ++ LW D G+Q+ +
Sbjct: 88  REKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAY 147

Query: 118 HRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFD 177
            R RE+QL +S  Y+L+ LD++  P+YIP+QQD+L  R  T GI E  F  K++ FKM D
Sbjct: 148 DRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVD 207

Query: 178 VGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM 237
           VGGQRSERK+W  CF+ VT+I+F V+ S +D VL ED + NR+ ES+ +F++I N++ F 
Sbjct: 208 VGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267

Query: 238 DTSIILFLNKNDLFQEKITKSPLTVCFPEYTD------------------------QKEI 273
           + SIILFLNK DL +EK+    +   F E+                          Q+ +
Sbjct: 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPL 327

Query: 274 YTHFTCATDTSNIQFVFDAVTDVIIKANLKDCGI 307
           Y HFT A +T NI+ VF  V D I+  NLK   +
Sbjct: 328 YHHFTTAINTENIRLVFRDVKDTILHDNLKQLML 361

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354

 Score =  367 bits (944), Expect = e-128
 Identities = 119/346 (34%), Positives = 178/346 (51%), Gaps = 47/346 (13%)

Query: 9   REVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQL 68
              KLLLLGAGESGKSTI KQ+K++ +TG+ + E + Y PV+++N  Q++  +     + 
Sbjct: 8   HIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEF 67

Query: 69  KIDFGDHKNADCARQFFTLAS-------AAEEGDLTPDLVILMKRLWSDQGVQHCFHRSR 121
             +  D      + +   +           +   LT D+   ++ LW D  +Q    R  
Sbjct: 68  AQNETDSAKYMLSSESIAIGEKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQETCARGN 127

Query: 122 EYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKD------LHFKM 175
           E Q+ D   Y +  L R+S  NYIPT++DVL  RV+TTG++E  F+           +++
Sbjct: 128 ELQVPDCTKYLMENLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRL 187

Query: 176 FDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235
           FDVGGQR+ER+KWIH FEGVTA+IFC A+S YD  L EDE+ NRM+E+ +LFD +     
Sbjct: 188 FDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 247

Query: 236 FMDTSIILFLNKNDLFQEKITKSPLTVC--FPEYT------------------------- 268
           F  TS +LFLNK D+F++K+   PL VC  F +Y                          
Sbjct: 248 FEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYY 307

Query: 269 -------DQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKDCGI 307
                    +    + T A D   ++  F  V + + + NL + G+
Sbjct: 308 QNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLLEAGL 353

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402

 Score =  358 bits (919), Expect = e-123
 Identities = 135/359 (37%), Positives = 184/359 (51%), Gaps = 56/359 (15%)

Query: 5   QWQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECE---------------QYRPV 49
           Q      +LLLLGAGESGKSTIVKQM+I+H  G++ E  E                    
Sbjct: 35  QVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNGEGGEEDPQAARSNSDGEKATKVQD 94

Query: 50  VYSNSIQSLMAIIRAMGQLKIDFGDHKNADCAR-QFFTLASAAEEGDLTPDLVILMKRLW 108
           + +N  +++  I+ AM  L          +  R  +        + D  P+     K LW
Sbjct: 95  IKNNLKEAIETIVAAMSNLVPPVELANPENQFRVDYILSVMNVPDFDFPPEFYEHAKALW 154

Query: 109 SDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTF 168
            D+GV+ C+ RS EYQL D A Y+L+ +D I Q +Y+P+ QD+LR RV T+GI ET F  
Sbjct: 155 EDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKFQV 214

Query: 169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFD 228
             ++F MFDVGGQR ER+KWI CF  VTAIIF VA S Y+ V+ ED + NR+ E++ LF 
Sbjct: 215 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFK 274

Query: 229 SICNSKWFMDTSIILFLNKNDLFQEKIT--KSPLTVCFPEYTD----------------- 269
           SI N++W    S+ILFLNK DL  EK+   KS +   FPE+                   
Sbjct: 275 SIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRV 334

Query: 270 ---------------------QKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKDCGI 307
                                +   Y HFTCA DT NI+ VF+   D+I + +L+   +
Sbjct: 335 TRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYEL 393

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 11/89 (12%)

Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
            E   T   + F  FD+GG    R+ W +    +  I+F V     D     D E  R++
Sbjct: 61  SEE-LTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV-----DCA---DHE--RLL 109

Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
           ES +  DS+   +   +  I++  NK D 
Sbjct: 110 ESKEELDSLMTDETIANVPILILGNKIDR 138

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 11/89 (12%)

Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
            E      ++ F  FD+GG    R+ W   F  V  I+F V     D+    D E  R  
Sbjct: 59  SEE-LAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV-----DAA---DPE--RFD 107

Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
           E+    D++ N     D   ++  NK D 
Sbjct: 108 EARVELDALFNIAELKDVPFVILGNKIDA 136

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 61.4 bits (150), Expect = 9e-12
 Identities = 31/140 (22%), Positives = 62/140 (44%), Gaps = 15/140 (10%)

Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
           +ET  T+K+L F+++D+GG  S R  W   +    A+I+ V     DS    D +  R+ 
Sbjct: 43  VET-VTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV-----DSC---DRD--RIG 91

Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTC 279
            S     ++   +      +++F NK D+ ++ +T S +      P   D ++     T 
Sbjct: 92  ISKSELVAMLEEEELRKAILVVFANKQDM-EQAMTSSEMANSLGLPALKD-RKWQIFKTS 149

Query: 280 ATDTSNIQFVFDAVTDVIIK 299
           AT  + +    + + + +  
Sbjct: 150 ATKGTGLDEAMEWLVETLKS 169

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 11/89 (12%)

Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
           +E      +  F M+D+GGQ S R  W   +     +I  V     DS    D E  R+ 
Sbjct: 57  VEE-IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV-----DST---DRE--RIS 105

Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
            + +    +   +      +++F NK D+
Sbjct: 106 VTREELYKMLAHEDLRKAGLLIFANKQDV 134

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 11/89 (12%)

Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
           I++    +     ++D+GGQR  R  W   FE    +I+ +     DS    D +  R  
Sbjct: 52  IKS-VQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVI-----DSA---DRK--RFE 100

Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
           E+ +    +   +      +++F NK DL
Sbjct: 101 ETGQELTELLEEEKLSCVPVLIFANKQDL 129

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
           I+T    +     ++DVGGQ+S R  W + FE    +I+ V     DS    D +  RM 
Sbjct: 54  IKT-LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV-----DSA---DRQ--RMQ 102

Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
           +  +   S+   +     ++++F NK DL
Sbjct: 103 DCQRELQSLLVEERLAGATLLIFANKQDL 131

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 60.7 bits (148), Expect = 3e-11
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 11/89 (12%)

Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
           +    T  ++  K++D+GGQ   R  W     GV+AI++ V     D+    D+E  ++ 
Sbjct: 59  MRK-ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV-----DAA---DQE--KIE 107

Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
            S     ++ +        +++  NK DL
Sbjct: 108 ASKNELHNLLDKPQLQGIPVLVLGNKRDL 136

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 60.3 bits (147), Expect = 3e-11
 Identities = 25/140 (17%), Positives = 58/140 (41%), Gaps = 15/140 (10%)

Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
           +ET   +K++ F+++D+GGQ   R  W   F    A+I+ V     DS    D +  RM 
Sbjct: 58  LET-LQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVV-----DST---DRD--RMG 106

Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTC 279
            +     ++ +      + +++F NK DL  +  +++ +          ++       + 
Sbjct: 107 VAKHELYALLDEDELRKSLLLIFANKQDL-PDAASEAEIAEQLGVSSIMNRT-WTIVKSS 164

Query: 280 ATDTSNIQFVFDAVTDVIIK 299
           +     +    D + + + +
Sbjct: 165 SKTGDGLVEGMDWLVERLRE 184

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 11/89 (12%)

Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
           +E      +  F M+D+GGQ S R  W   +     +I  V     DS    D E  R+ 
Sbjct: 52  VEE-IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV-----DST---DRE--RIS 100

Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
            + +    +   +      +++F NK D+
Sbjct: 101 VTREELYKMLAHEDLRKAGLLIFANKQDV 129

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
           +ET  ++K+L   ++D+GGQ S R  W   +    A+IF V     DS    D++  RM 
Sbjct: 54  VET-LSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVV-----DST---DKD--RMS 102

Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
            + K    +   +   D ++++F NK D 
Sbjct: 103 TASKELHLMLQEEELQDAALLVFANKQDQ 131

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 59.5 bits (145), Expect = 5e-11
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 11/89 (12%)

Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
           +ET   +K++ F ++DVGGQ   R  W H F+    +IF V     DS    D E  R+ 
Sbjct: 36  VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV-----DSN---DRE--RVN 84

Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
           E+ +    +       D  +++F NK DL
Sbjct: 85  EAREELMRMLAEDELRDAVLLVFANKQDL 113

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 12/94 (12%)

Query: 158 TTG-IIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEE 216
           T G  +ET   +K++ F ++DVGGQ   R  W H F+    +IF V     DS    D E
Sbjct: 60  TIGFNVET-VEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV-----DSN---DRE 110

Query: 217 MNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL 250
             R+ ES      +       D  +++F NK D+
Sbjct: 111 --RVQESADELQKMLQEDELRDAVLLVFANKQDM 142

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 58.0 bits (140), Expect = 8e-10
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 11/89 (12%)

Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
           +ET   +K++ F ++DVGGQ   R  W H F+    +IF V     DS    D E  R+ 
Sbjct: 201 VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV-----DSN---DRE--RVN 249

Query: 222 ESMKLFDSICNSKWFMDTSIILFLNKNDL 250
           E+ +    +       D  +++F NK DL
Sbjct: 250 EAREELMRMLAEDELRDAVLLVFANKQDL 278

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 56.5 bits (137), Expect = 8e-10
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 162 IETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI 221
           IE  F    L F +FD+ GQ   R  W H ++   AIIF +     DS    D    RM+
Sbjct: 59  IEK-FKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVI-----DSS---DRL--RMV 107

Query: 222 ESMKLFDSICNSK--WFMDTSIILFLNKNDL 250
            + +  D++ N          I+ F NK DL
Sbjct: 108 VAKEELDTLLNHPDIKHRRIPILFFANKMDL 138

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 1e-08
 Identities = 44/324 (13%), Positives = 80/324 (24%), Gaps = 102/324 (31%)

Query: 8   EREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQ 67
                +L+ G   SGK+ +                      V  S  +Q  M        
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALD-------------------VCLSYKVQCKM-------- 180

Query: 68  LKIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLND 127
              DF           +  L +      +   L  L+ ++  +       H S       
Sbjct: 181 ---DFKIF--------WLNLKNCNSPETVLEMLQKLLYQIDPN-WTSRSDHSSNIKLRIH 228

Query: 128 SAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKK 187
           S    L  L  +    Y      VL   V+                  F++         
Sbjct: 229 SIQAELRRL--LKSKPY-ENCLLVLLN-VQNAKAW-----------NAFNLS-------- 265

Query: 188 WIHC-------FEGVTAII-----FCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW 235
              C       F+ VT  +       ++L  +   L  D       E   L       K+
Sbjct: 266 ---CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-------EVKSLL-----LKY 310

Query: 236 FMDTSIILFLNKNDLFQEKITKSPLTVC-----FPEYTDQKEIYTHFTCATDTSNIQFVF 290
                  L     DL +E +T +P  +        +     + + H  C   T+ I+   
Sbjct: 311 -------LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 291 DAVTDVIIKANLKDCGI-REEVKL 313
           + +     +       +      +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHI 387

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 50.5 bits (121), Expect = 9e-08
 Identities = 28/186 (15%), Positives = 49/186 (26%), Gaps = 34/186 (18%)

Query: 123 YQLNDSAAYYLNALDRISQPNYIPTQQ-DVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQ 181
             +                     T   D L   +                F ++ V GQ
Sbjct: 32  KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGE-------VKGFKTRFHLYTVPGQ 84

Query: 182 RSERKKWIHCFEGVTAIIFCVALSGYDS----VLAEDEEMNRMIESMKLFDSICNSKWFM 237
                       GV  I+F       DS    + A  E M  M E++  +          
Sbjct: 85  VFYNASRKLILRGVDGIVFVA-----DSAPNRLRANAESMRNMRENLAEYGLT-----LD 134

Query: 238 DTSIILFLNKNDLFQEKITKSPLTVCFPEYTD----QKEIYTHFTCATDTSNIQFVFDAV 293
           D  I++ +NK DL        P  +           + +       AT+   +      V
Sbjct: 135 DVPIVIQVNKRDL--------PDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEV 186

Query: 294 TDVIIK 299
           + +++ 
Sbjct: 187 SRLVLA 192

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 17/101 (16%)

Query: 158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFE----GVTAIIFCVALSGYDSVLAE 213
           +   +     +      + D  G    R K     +     V  +IF V     DS    
Sbjct: 79  SQEPLSAA-DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMV-----DS--TV 130

Query: 214 DEEMNRMIESMKLFDSI---CNSKWFMDTSIILFLNKNDLF 251
           D +  ++  + +    I     S       I++  NK++LF
Sbjct: 131 DPK--KLTTTAEFLVDILSITESSCENGIDILIACNKSELF 169

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 45.0 bits (106), Expect = 8e-06
 Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 14/100 (14%)

Query: 158 TTGIIETHFTFK-DLHFKMFDVGGQRSERKKWI---HCFEGVTAIIFCVALSGYDSVLAE 213
           T  I +   +    ++F+++D  GQ             F G  A+I+ +     D+    
Sbjct: 55  TNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVI-----DAQDDY 109

Query: 214 DEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQE 253
            E + R+  ++     +       D +  +F++K D   +
Sbjct: 110 MEALTRLHITVSKAYKVN-----PDMNFEVFIHKVDGLSD 144

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 17/101 (16%)

Query: 158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFE----GVTAIIFCVALSGYDSVLAE 213
           +   +     +      + D  G    R K     +     V  +IF V     DS    
Sbjct: 43  SQEPLSAA-DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMV-----DS--TV 94

Query: 214 DEEMNRMIESMKLFDSI---CNSKWFMDTSIILFLNKNDLF 251
           D +  ++  + +    I     S       I++  NK++LF
Sbjct: 95  DPK--KLTTTAEFLVDILSITESSCENGIDILIACNKSELF 133

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 14/87 (16%)

Query: 169 KDLHFKMFDVGGQRSERKK-WIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK-- 225
           +     + D+ G  S R +          A++F V     DS      +  R ++ +   
Sbjct: 52  RGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV-----DSA---AFQ--REVKDVAEF 101

Query: 226 LFDSICNSKWFMDTSIILFL-NKNDLF 251
           L+  + +S    ++  +L   NK D+ 
Sbjct: 102 LYQVLIDSMALKNSPSLLIACNKQDIA 128

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 39.6 bits (92), Expect = 7e-04
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 15/102 (14%)

Query: 158 TTGIIETHFTF-KDLHFKMFDVGGQRS-----ERKKWIHCFEGVTAIIFCVALSGYDSVL 211
           T  +  +H  F  ++   ++D GGQ         K+  H F+ V  +I    +   +   
Sbjct: 38  TIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEV-- 95

Query: 212 AEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQE 253
              +++    +++K            D  I + L+K DL Q 
Sbjct: 96  --LKDIEIFAKALKQLRKYS-----PDAKIFVLLHKMDLVQL 130

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	100.0
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	100.0
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	100.0
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	100.0
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	100.0
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	100.0
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.94
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.93
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.93
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.93
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.93
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.93
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.92
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.92
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.92
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.92
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.92
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.92
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.92
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.92
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.92
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.91
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.91
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.91
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.9
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.9
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.9
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.9
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.9
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.9
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.9
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.9
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.9
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.89
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.89
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.89
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.89
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.89
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.89
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.89
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.89
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.89
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.89
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.89
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.89
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.89
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.89
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.89
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.89
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.89
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.89
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.89
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.89
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.89
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.89
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.89
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.88
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.88
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.88
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.88
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.88
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.88
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.88
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.88
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.88
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.88
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.88
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.88
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.88
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.88
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.88
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.88
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.88
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.88
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.88
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.88
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.88
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.88
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.87
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.87
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.87
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.87
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.87
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.87
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.87
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.87
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.87
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.87
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.87
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.87
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.86
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.86
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.86
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.86
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.86
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.86
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.86
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.86
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.86
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.86
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.85
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.85
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.85
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.85
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.84
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.72
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.81
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.81
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.8
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.8
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.8
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.79
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.79
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.78
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.77
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.77
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.77
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.75
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.74
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.73
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.72
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.72
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.71
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.7
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.69
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.69
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.67
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.67
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.67
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.66
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.65
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.64
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.63
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.62
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.62
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.61
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.61
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.61
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.61
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.61
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.6
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.6
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.59
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.58
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.57
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.56
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.56
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.56
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.55
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.54
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.54
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.53
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.53
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.52
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.52
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.52
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.52
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.51
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.51
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.51
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.5
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.5
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.5
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.49
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.48
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.48
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.48
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.47
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.47
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.45
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.45
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.42
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.41
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.4
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.39
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.36
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.36
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.35
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.34
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.32
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.31
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.3
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.27
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.26
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.24
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.24
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.24
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.16
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.13
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.09
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.09
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.08
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.05
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.04
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.0
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.98
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.96
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.92
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.88
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.85
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.79
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.79
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.7
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.63
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.55
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.52
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.41
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.39
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.37
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.31
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	98.1
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.89
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.68
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.65
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.96
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.96
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.95
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.76
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.53
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.45
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.43
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.31
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.3
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.26
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.23
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.14
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.13
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.09
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.07
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.03
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.03
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.02
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.98
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.98
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.97
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	95.97
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.95
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.92
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.92
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.91
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.9
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	95.89
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.88
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	95.88
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.88
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	95.87
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	95.86
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.86
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.85
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.82
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.82
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.82
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.79
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.79
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.78
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.77
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.77
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.72
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.71
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	95.71
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.7
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	95.7
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	95.69
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.66
4a74_A	231	DNA repair and recombination protein RADA; hydrola	95.65
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.65
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.65
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.64
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.64
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.63
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.63
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.62
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	95.62
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.62
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.6
1via_A	175	Shikimate kinase; structural genomics, transferase	95.6
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	95.58
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.54
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.52
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.5
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.49
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.45
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	95.44
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.42
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.41
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.41
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.4
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	95.39
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.37
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.37
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.36
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.36
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.35
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	95.34
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.34
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.31
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.28
1g6h_A	257	High-affinity branched-chain amino acid transport	95.27
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.27
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.26
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.25
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.25
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.24
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	95.24
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.24
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.22
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.21
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.2
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.18
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.18
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.18
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	95.17
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.17
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.16
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	95.15
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.13
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.12
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.12
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.11
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.1
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.1
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.09
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.08
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.07
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.05
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.05
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	95.04
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.03
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	95.03
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.03
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.02
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.01
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	95.0
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	94.97
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	94.97
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	94.91
2cvh_A	220	DNA repair and recombination protein RADB; filamen	94.9
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.9
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	94.82
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	94.79
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	94.78
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	94.77
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	94.74
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	94.74
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	94.69
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	94.65
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	94.63
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	94.62
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	94.56
3kta_A	182	Chromosome segregation protein SMC; structural mai	94.54
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	94.54
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	94.53
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	94.51
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.51
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	94.47
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	94.43
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	94.43
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	94.43
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.37
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	94.36
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	94.36
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	94.35
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	94.34
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	94.33
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	94.33
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	94.32
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	94.3
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	94.29
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	94.29
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.29
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	94.28
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	94.26
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	94.23
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	94.2
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	94.09
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	94.09
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	94.08
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	94.05
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	93.97
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	93.96
2ewv_A	372	Twitching motility protein PILT; pilus retraction	93.94
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	93.92
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	93.9
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	93.89
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	93.88
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	93.82
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	93.82
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	93.79
1p9r_A	418	General secretion pathway protein E; bacterial typ	93.76
3bos_A	242	Putative DNA replication factor; P-loop containing	93.74
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	93.7
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	93.69
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	93.67
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	93.58
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	93.57
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	93.51
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	93.51
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	93.49
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	93.48
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	93.45
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	93.44
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	93.44
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	93.42
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	93.41
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	93.37
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	93.29
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	93.29
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	93.22
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	93.14
2og2_A	359	Putative signal recognition particle receptor; nuc	93.14
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	93.13
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	93.12
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	93.06
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	93.05
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	92.89
2chg_A	226	Replication factor C small subunit; DNA-binding pr	92.88
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	92.75
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	92.74
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	92.72
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	92.72
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	92.62
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	92.56
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	92.55
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	92.52
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	92.4
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	92.34
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	92.32
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	92.28
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	92.25
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	92.21
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	92.2
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	92.14
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	92.09
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	92.06
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	92.0
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	92.0
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	91.98
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	91.96
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	91.95
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	91.95
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	91.85
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	91.83
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	91.76
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	91.76
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	91.74
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	91.71
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	91.58
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	91.55
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	91.42
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	91.42
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	91.28
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	91.27
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	91.25
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	91.21
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	91.21
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	91.2
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	91.18
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	91.17
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	91.15
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	91.11
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	91.11
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	91.11
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	91.08
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	90.99
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	90.94
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	90.91
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	90.9
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	90.87
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	90.84
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	90.82
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	90.8
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	90.76
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	90.58
3co5_A	143	Putative two-component system transcriptional RES	90.56
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	90.51
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	90.5
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	90.49
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	90.39
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	90.32
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	90.28
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	90.2
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	90.18
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	90.11
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	90.11
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	90.09
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	90.08
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	90.03
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	90.0
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	89.98
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	89.93
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	89.92
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	89.9
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	89.88
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	89.84
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	89.8
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	89.77
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	89.68
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	89.59

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=100.00  E-value=5.1e-77  Score=539.05  Aligned_cols=303  Identities=53%  Similarity=0.875  Sum_probs=283.0

Q ss_pred             hhhhccceEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHhHHHHH
Q psy8318           5 QWQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQF   84 (313)
Q Consensus         5 ~~~~~~~killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~~~~~~~~~~~i   84 (313)
                      ++.++++|+||||+|+||||||+||||++|+.||+++|+..|++.||.|++++|+.|+++|+.+++++++|+++..++.+
T Consensus         2 ~~~~~~~klLlLG~geSGKSTi~KQmkiih~~gfs~~e~~~~~~~i~~N~~~~~~~li~a~~~l~i~~~~~~~~~~~~~~   81 (327)
T 3ohm_A            2 ADARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLV   81 (327)
T ss_dssp             ---CCEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCSSTHHHHHHHHH
T ss_pred             chhcccceEEEEcCCCccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HhhhcccCCCCCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCccccccccceeeeecceeEE
Q psy8318          85 FTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIET  164 (313)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~~T~g~~~~  164 (313)
                      +....... .++++++++.|+.||+||+||+||.|+++|+++|++.|||++++||+.++|.||.+|+++++.||+|+.+.
T Consensus        82 ~~~~~~~~-~~~~~e~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dilr~r~~TiGi~~~  160 (327)
T 3ohm_A           82 REVDVEKV-SAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEY  160 (327)
T ss_dssp             HTCCGGGC-CCCCTTHHHHHHHHHTCHHHHHHHHGGGGSCCCTTHHHHHTTHHHHHSTTCCCCHHHHTTCCCCCCSEEEE
T ss_pred             hccccccc-ccccHHHHHHHHHHHcCHHHHHHHHccccceecccHHHHHHHHHHHhccCCCccccchhcccCceeeEEEE
Confidence            87644332 57999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEE
Q psy8318         165 HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILF  244 (313)
Q Consensus       165 ~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv  244 (313)
                      .++++++++++||||||+++|++|.+||++++++|||+|+++|||++.|+.+.+++.++..+|+++++++++.++|++||
T Consensus       161 ~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~  240 (327)
T 3ohm_A          161 PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILF  240 (327)
T ss_dssp             EEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEE
T ss_pred             EEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCcccccccCCcccccCcCCC-----------------------CCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         245 LNKNDLFQEKITKSPLTVCFPEYT-----------------------DQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       245 ~NK~Dl~~~k~~~~~l~~~f~~~~-----------------------~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      +||+|++.+++...++..+||+|+                       ..+++++|+|||+++.||+.+|..+.+.|++++
T Consensus       241 ~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          241 LNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             EECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             EECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence            999999999998899999999996                       235789999999999999999999999999999


Q ss_pred             hhhcCCc
Q psy8318         302 LKDCGIR  308 (313)
Q Consensus       302 ~~~~~~~  308 (313)
                      +++.|+.
T Consensus       321 l~~~~l~  327 (327)
T 3ohm_A          321 LKEYNLV  327 (327)
T ss_dssp             CC-----
T ss_pred             HHhcCCC
Confidence            9998863

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=100.00  E-value=3.3e-74  Score=522.30  Aligned_cols=297  Identities=38%  Similarity=0.644  Sum_probs=277.1

Q ss_pred             hhccceEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHhHHHHHHh
Q psy8318           7 QEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFT   86 (313)
Q Consensus         7 ~~~~~killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~~~~~~~~~~~i~~   86 (313)
                      .++++|+||||+|+||||||+||||++|+.||+++|+..|++.||.|++++|+.|+++|+.+++++++++++..+   +.
T Consensus         2 ~~~~~klLLLG~geSGKSTi~KQmkii~~~gfs~~e~~~~~~~i~~N~~~~~~~li~~~~~l~i~~~~~~~~~~~---~~   78 (340)
T 4fid_A            2 NAKPITVMLLGSGESGKSTIAKQLKILFGGGFPEQERATHKSSICSNVVTCMRTLIEQSAILNHPMKYQPKSKEF---TT   78 (340)
T ss_dssp             --CCEEEEEEECTTSSHHHHHHHHHHHTSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCSCCCCSGGG---SC
T ss_pred             CCCcceEEEECCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCChhhHHHH---hh
Confidence            367999999999999999999999999999999999999999999999999999999999999999999987655   22


Q ss_pred             hhcccCCCCCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCccccccccceeeeecceeEEEE
Q psy8318          87 LASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIETHF  166 (313)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~~T~g~~~~~~  166 (313)
                      ..  ....++++++++.|+.||+||+||+||.|+++|+++|++.|||++++|++.++|.||.+|+++++.||+|+.+..+
T Consensus        79 ~~--~~~~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dil~~~~~TiGi~~~~~  156 (340)
T 4fid_A           79 ED--PVTLPFSPELVGDVEALWADEGIQATYEESAKFQLPDCAKYLFENVKRIAMEDYVPTEEDLIHNRTKTTGIHEYDF  156 (340)
T ss_dssp             CS--CCCSSCCTTHHHHHHHHHHSHHHHHHHHTCTTSCCCTTHHHHHHTHHHHSSTTCCCCHHHHHHSCCCCCSCEEEEE
T ss_pred             cc--cCCCCCCHHHHHHHHHHHcCHHHHHHHHhcccccccchhhhHHHHHHHHhcccCCccccceeecccceeeeEEEEE
Confidence            22  3346799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEee
Q psy8318         167 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLN  246 (313)
Q Consensus       167 ~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~N  246 (313)
                      +++++++++||||||+++|++|.+||++++++|||+|+++|||++.|+.+.+++.++..+|+++++++++.++|++||+|
T Consensus       157 ~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~N  236 (340)
T 4fid_A          157 VVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLN  236 (340)
T ss_dssp             ESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEE
T ss_pred             EeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccccccCCcccccCcCCCC----------------------------C-----------CCeEEEEeecccCcCHH
Q psy8318         247 KNDLFQEKITKSPLTVCFPEYTD----------------------------Q-----------KEIYTHFTCATDTSNIQ  287 (313)
Q Consensus       247 K~Dl~~~k~~~~~l~~~f~~~~~----------------------------~-----------~~~~~~~tSA~~~~~v~  287 (313)
                      |+|++.+++...++.++||+|..                            .           +.+++|+|||+++.||+
T Consensus       237 K~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~  316 (340)
T 4fid_A          237 KMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIK  316 (340)
T ss_dssp             CHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHH
T ss_pred             CchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHH
Confidence            99999988988999999999852                            0           46899999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhcCCcc
Q psy8318         288 FVFDAVTDVIIKANLKDCGIRE  309 (313)
Q Consensus       288 ~~f~~i~~~i~~~~~~~~~~~~  309 (313)
                      .+|..+.+.|++ ++++.|+..
T Consensus       317 ~vF~~v~~~Il~-~l~~~~~~~  337 (340)
T 4fid_A          317 RVFMLAVDVIMK-NMAANGKMR  337 (340)
T ss_dssp             HHHHHHHHHHHH-HHHHTTCCC
T ss_pred             HHHHHHHHHHHH-HHHHcCCCC
Confidence            999999999999 999999864

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=100.00  E-value=3.1e-73  Score=521.48  Aligned_cols=304  Identities=83%  Similarity=1.281  Sum_probs=279.6

Q ss_pred             hhhhccceEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHhHHHHH
Q psy8318           5 QWQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQF   84 (313)
Q Consensus         5 ~~~~~~~killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~~~~~~~~~~~i   84 (313)
                      ++.++++|+||||+|+||||||+||||++|++||+++|+..|+++||.|++++|+.|+++|+.+++++.+++++..++.+
T Consensus        27 ~~~~~~~klLlLG~geSGKST~~KQmkii~~~g~~~~e~~~~~~~i~~N~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~  106 (353)
T 1cip_A           27 EKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARADDARQL  106 (353)
T ss_dssp             ----CEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTCCCSSTTHHHHHHHH
T ss_pred             HhhcccceEEEEcCCCCCchhHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             HhhhcccCCCCCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCccccccccceeeeecceeEE
Q psy8318          85 FTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTTGIIET  164 (313)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~~T~g~~~~  164 (313)
                      +.+....+...+++++++.++.||+||+||+||.|+++|+++|++.|||++++||+.++|.||.+|+++++.||+|+.+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~i~~lw~d~~iq~~~~~~~e~~l~dsa~yfl~~~~ri~~~~Y~PT~~Dil~~~~~T~Gi~~~  186 (353)
T 1cip_A          107 FVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVET  186 (353)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTSTTCCCCHHHHHTCCCCCCSEEEE
T ss_pred             HhhccccccccCCHHHHHHHHHHHCCHHHHHHHHhhhhcccCccHHHHHHHHHHHhcCCCCCCccccccccCceeceEEE
Confidence            87755444467999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEE
Q psy8318         165 HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILF  244 (313)
Q Consensus       165 ~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv  244 (313)
                      .++++++.+++||||||+++|++|.+||+++++||||+|+++||+++.||++.+++.++..+|+++++++++.++|++||
T Consensus       187 ~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv  266 (353)
T 1cip_A          187 HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF  266 (353)
T ss_dssp             EEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEE
T ss_pred             EEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888899999999


Q ss_pred             eecCCcccccccCCcccccCcCCCC-----------------------CCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         245 LNKNDLFQEKITKSPLTVCFPEYTD-----------------------QKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       245 ~NK~Dl~~~k~~~~~l~~~f~~~~~-----------------------~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      +||+|++.+++...++..+||+|..                       .+++++|+|||++|+||.++|+++.+.+++.+
T Consensus       267 ~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~  346 (353)
T 1cip_A          267 LNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN  346 (353)
T ss_dssp             EECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             EECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence            9999999888888889999998851                       36789999999999999999999999999999


Q ss_pred             hhhcCCc
Q psy8318         302 LKDCGIR  308 (313)
Q Consensus       302 ~~~~~~~  308 (313)
                      +++.||+
T Consensus       347 l~~~~l~  353 (353)
T 1cip_A          347 LKDCGLF  353 (353)
T ss_dssp             -------
T ss_pred             HHHcCCC
Confidence            9998873

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=100.00  E-value=4.6e-71  Score=512.19  Aligned_cols=304  Identities=44%  Similarity=0.769  Sum_probs=276.4

Q ss_pred             hhhhccceEEEEcCCCCchhHHHHHHHHHhcCCCChH---------------HHhhhHHHHHHHHHHHHHHHHHHHHHcC
Q psy8318           5 QWQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKE---------------ECEQYRPVVYSNSIQSLMAIIRAMGQLK   69 (313)
Q Consensus         5 ~~~~~~~killlG~~~sGKst~~kq~r~~~~~~~~~~---------------e~~~~~~~I~~N~~~~~~~li~~~~~~~   69 (313)
                      ++.++++|+||||+|+||||||+||||++|+.||+++               |+..|++.|+.|++++|+.|+++|+.++
T Consensus        35 ~~~~~~~klLLLG~geSGKSTi~KQmkiih~~gfs~~E~~~~~~~~~~~~~~e~~~~~~~i~~Ni~~~~~~i~~a~~~l~  114 (402)
T 1azs_C           35 QVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLV  114 (402)
T ss_dssp             -CCTTEEEEEEEESTTSSHHHHHHHHHHHHCCC-------------------CTTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHhhccceEEEecCCCCchhhHHHHHHHHhCCCCChHHhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3467899999999999999999999999999999975               6778999999999999999999999997


Q ss_pred             --CCcCCCCCHhHHHHHHhhhcccCCCCCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCccc
Q psy8318          70 --IDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPT  147 (313)
Q Consensus        70 --i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt  147 (313)
                        +++.+++++..++.++......+ ..+++++++.|+.||+||+||+||.|+++|+++|++.|||++++||+.++|.||
T Consensus       115 ~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT  193 (402)
T 1azs_C          115 PPVELANPENQFRVDYILSVMNVPD-FDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPS  193 (402)
T ss_dssp             SCCCCSSGGGHHHHHHHHHTTTCSS-CCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTCTTCCCC
T ss_pred             CCcccCCchhHHHHHHHHhhcccCC-CCCCHHHHHHHHHHHcCHHHHHHHHhcccceeccchhhHHHHHHHhhccccCCc
Confidence              78889998888888877654332 579999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceeeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHH
Q psy8318         148 QQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF  227 (313)
Q Consensus       148 ~~dil~~~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~  227 (313)
                      .+|+++++.+|+|+.+..+.++++.+++||||||+++|++|.+||++++++|||+|+++|||++.|+.+.+++.++..||
T Consensus       194 ~~Dil~~r~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~  273 (402)
T 1azs_C          194 DQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLF  273 (402)
T ss_dssp             HHHHHHCCCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHH
T ss_pred             cccccccccceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCcEEEEeecCCccccccc--CCcccccCcCCCC------------------------------------
Q psy8318         228 DSICNSKWFMDTSIILFLNKNDLFQEKIT--KSPLTVCFPEYTD------------------------------------  269 (313)
Q Consensus       228 ~~~~~~~~~~~~piilv~NK~Dl~~~k~~--~~~l~~~f~~~~~------------------------------------  269 (313)
                      +.+++++++.++|++||+||+|++.+++.  ..++.++||+|..                                    
T Consensus       274 ~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~  353 (402)
T 1azs_C          274 KSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASG  353 (402)
T ss_dssp             HHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhcccc
Confidence            99999888889999999999999987774  5578889988831                                    


Q ss_pred             --CCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhhhcCCcc
Q psy8318         270 --QKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKDCGIRE  309 (313)
Q Consensus       270 --~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~~~~~~~  309 (313)
                        .+.+++|+|||++++||+++|.++.+.|++.++++.||+-
T Consensus       354 ~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~~l~~~~~~~  395 (402)
T 1azs_C          354 DGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELLG  395 (402)
T ss_dssp             TTSSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             ccCcccEEEEEEeecCcCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence              1368899999999999999999999999999999998874

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=100.00  E-value=2e-70  Score=504.38  Aligned_cols=301  Identities=44%  Similarity=0.784  Sum_probs=269.9

Q ss_pred             hhhccceEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHhHHHHHH
Q psy8318           6 WQEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFF   85 (313)
Q Consensus         6 ~~~~~~killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~~~~~~~~~~~i~   85 (313)
                      +.++.+||||||++|||||||+||||++|.+||++.|+..|+..|+.|++++|+.|+++|+.+++++.+++++..+..++
T Consensus        29 ~~~~~~killlG~~~SGKST~~kq~~i~~~~~~~~~e~~~~~~~i~~n~~~s~~~il~a~~~~~i~~~~~~~~~~~~~~~  108 (362)
T 1zcb_A           29 RSARLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLM  108 (362)
T ss_dssp             --CCCEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCSSGGGHHHHHHHH
T ss_pred             HhcCccEEEEECCCCCcHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999988888887


Q ss_pred             hhhccc--------CCCCCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCccccccccceeee
Q psy8318          86 TLASAA--------EEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVK  157 (313)
Q Consensus        86 ~~~~~~--------~~~~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~~  157 (313)
                      ......        +...+ +++++.|+.||+||+||+||.|+++|+++|++.|||++++||+.++|.||.+|+++++.|
T Consensus       109 ~~~~~~~~~~~g~~~~~~~-~~~~~~i~~LW~d~~iq~~~~r~~e~~l~ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~  187 (362)
T 1zcb_A          109 AFDTRAPMAAQGMVETRVF-LQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRP  187 (362)
T ss_dssp             TSCSSSHHHHTTCCCHHHH-HHHHHHHHHHHHCHHHHHHHHTGGGSCCCTTHHHHHTTHHHHTSTTCCCCHHHHHHCCCC
T ss_pred             hhcccccccccccCcchhH-HHHHHHHHHHHCCHHHHHHHHhcchhhhcccHHHHHHHHHHHhcCCCCCChhhhhhccCC
Confidence            664321        11346 899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318         158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM  237 (313)
Q Consensus       158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~  237 (313)
                      |+|+.+..++++++.+++||||||+.+|++|.+||++++++|||+|+++|||++.||++.+++.++..+|+.+++++++.
T Consensus       188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~  267 (362)
T 1zcb_A          188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS  267 (362)
T ss_dssp             CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred             ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988889


Q ss_pred             CCcEEEEeecCCcccccccCCcccccCcCCCC------------------------CCCeEEEEeecccCcCHHHHHHHH
Q psy8318         238 DTSIILFLNKNDLFQEKITKSPLTVCFPEYTD------------------------QKEIYTHFTCATDTSNIQFVFDAV  293 (313)
Q Consensus       238 ~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~------------------------~~~~~~~~tSA~~~~~v~~~f~~i  293 (313)
                      ++|++||+||+|++.+++...++..+||+|..                        .+++++|+|||++|+||.++|.++
T Consensus       268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v  347 (362)
T 1zcb_A          268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV  347 (362)
T ss_dssp             TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHH
Confidence            99999999999999888888889999988851                        346899999999999999999999


Q ss_pred             HHHHHHhhhhhcCCc
Q psy8318         294 TDVIIKANLKDCGIR  308 (313)
Q Consensus       294 ~~~i~~~~~~~~~~~  308 (313)
                      .+.+++.++++ |++
T Consensus       348 ~~~i~~~~l~~-~l~  361 (362)
T 1zcb_A          348 KDTILHDNLKQ-LML  361 (362)
T ss_dssp             HHHHHHHHHC-----
T ss_pred             HHHHHHHHHHh-hcc
Confidence            99999999998 875

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=100.00  E-value=1.3e-68  Score=490.62  Aligned_cols=302  Identities=39%  Similarity=0.660  Sum_probs=267.3

Q ss_pred             hhccceEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcC-------CCCCHh
Q psy8318           7 QEREVKLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFG-------DHKNAD   79 (313)
Q Consensus         7 ~~~~~killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~-------~~~~~~   79 (313)
                      -.+++||||||++|||||||+||||++|.+||+++|+..|+..|+.|++++|+.|+++|+.++++..       +++++.
T Consensus         6 ~~~~~k~lllG~~~sGKsT~~kq~~~~~~~g~~~~e~~~~~~~i~~Ni~~~~~~ll~a~~~l~~~~~~~~~~~l~~~~~~   85 (354)
T 2xtz_A            6 GIHIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEFAQNETDSAKYMLSSESIA   85 (354)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCTTCCCHHHHH
T ss_pred             CCCceeEEEECCCCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCChhHHH
Confidence            3568899999999999999999999999999999999999999999999999999999999887665       344455


Q ss_pred             HHHHHHhhhcccCCCCCCHHHHHHHHHhhcChhHHHHHhhccccccccCHHHHHhccccccCCCCccccccccceeeeec
Q psy8318          80 CARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKTT  159 (313)
Q Consensus        80 ~~~~i~~~~~~~~~~~~~~~~~~~~~~lw~d~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~~T~  159 (313)
                      .+..+.......+...+++++++.|+.||+||+||+||.|+++++++|++.|||++++||+.++|.||.+|+++++.+|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT~~D~~~~r~~T~  165 (354)
T 2xtz_A           86 IGEKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLMENLKRLSDINYIPTKEDVLYARVRTT  165 (354)
T ss_dssp             HHHHHHHHHHHCSSCCCCHHHHHHHHHHTTCHHHHHHHTTGGGTTCCTTHHHHHTSHHHHHSTTCCCCHHHHHHCCCCCC
T ss_pred             HHHHHHhcccccccccCCHHHHHHHHHHHCCHHHHHHHHhcchhhhhccHHHHHHHHHHHhcCCCCCCchheeeeccccc
Confidence            55555555434445679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEEEe------cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC
Q psy8318         160 GIIETHFTF------KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS  233 (313)
Q Consensus       160 g~~~~~~~~------~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~  233 (313)
                      |+.+..|.+      +.+++++||||||+++|++|.+||++++++|||+|+++|||++.|+.+.++++++..+|++++++
T Consensus       166 Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~  245 (354)
T 2xtz_A          166 GVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ  245 (354)
T ss_dssp             SEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC
T ss_pred             ceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhc
Confidence            999999888      45899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCcEEEEeecCCcccccccCCccccc--CcCCC-----------------C---------------CCCeEEEEee
Q psy8318         234 KWFMDTSIILFLNKNDLFQEKITKSPLTVC--FPEYT-----------------D---------------QKEIYTHFTC  279 (313)
Q Consensus       234 ~~~~~~piilv~NK~Dl~~~k~~~~~l~~~--f~~~~-----------------~---------------~~~~~~~~tS  279 (313)
                      +.+.++|++||+||+|++.+++...++..+  ||+|.                 .               .+.+++|+||
T Consensus       246 ~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTS  325 (354)
T 2xtz_A          246 PCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTT  325 (354)
T ss_dssp             GGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECC
T ss_pred             cccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEE
Confidence            888899999999999998877655554433  77762                 0               2457789999


Q ss_pred             cccCcCHHHHHHHHHHHHHHhhhhhcCCc
Q psy8318         280 ATDTSNIQFVFDAVTDVIIKANLKDCGIR  308 (313)
Q Consensus       280 A~~~~~v~~~f~~i~~~i~~~~~~~~~~~  308 (313)
                      |++|+||+++|+++.+.|++.++++.||+
T Consensus       326 A~d~~nV~~vF~~v~~~I~~~~l~~~~l~  354 (354)
T 2xtz_A          326 ALDQKLVKKTFKLVDETLRRRNLLEAGLL  354 (354)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             eecchhHHHHHHHHHHHHHHHHHHhccCC
Confidence            99999999999999999999999998873

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.94  E-value=2e-27  Score=203.84  Aligned_cols=117  Identities=16%  Similarity=0.179  Sum_probs=93.4

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+++++|||+||+.++.+|..||++++++|+|+|+++          ..+++....|+..+... ...++|++|||||+|
T Consensus        61 ~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~----------~~Sf~~i~~~~~~i~~~-~~~~~piilVgNK~D  129 (216)
T 4dkx_A           61 TIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITN----------VNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTD  129 (216)
T ss_dssp             EEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-HTTSSEEEEEEECTT
T ss_pred             EEEEEEEECCCchhhhhHHHHHhccccEEEEEeecch----------hHHHHHHHHHHHHHHHh-cCCCCeEEEEeeccc
Confidence            4789999999999999999999999999999999999          88898888888887653 235789999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +..++....+....|.   ...++.+++|||++|.||.++|++|++.+...
T Consensus       130 l~~~r~V~~~e~~~~a---~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~  177 (216)
T 4dkx_A          130 LADKRQVSIEEGERKA---KELNVMFIETSAKAGYNVKQLFRRVAAALPGM  177 (216)
T ss_dssp             CGGGCCSCHHHHHHHH---HHHTCEEEEEBTTTTBSHHHHHHHHHHHC---
T ss_pred             hHhcCcccHHHHhhHH---HHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence            8765432222222222   22467899999999999999999999988643

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.93  E-value=5.1e-25  Score=180.47  Aligned_cols=132  Identities=21%  Similarity=0.356  Sum_probs=107.5

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|+....+.+++..+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...++..++....
T Consensus        36 ~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~  105 (171)
T 1upt_A           36 IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCD----------RDRIGISKSELVAMLEEEE  105 (171)
T ss_dssp             CCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTC----------CTTHHHHHHHHHHHHTCGG
T ss_pred             CCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchh
Confidence            466787777888889999999999999999999999999999999999998          6788989999998887655


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccC--cCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f--~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      ..+.|+++|+||+|+..+. ...++...+  ... ...++.++++||++|.|+.++|+++.+.+.+
T Consensus       106 ~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          106 LRKAILVVFANKQDMEQAM-TSSEMANSLGLPAL-KDRKWQIFKTSATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             GTTCEEEEEEECTTSTTCC-CHHHHHHHHTGGGC-TTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             hCCCEEEEEEECCCCcCCC-CHHHHHHHhCchhc-cCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence            5789999999999987641 111222211  112 3457789999999999999999999988753

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.93  E-value=2.7e-25  Score=181.03  Aligned_cols=132  Identities=23%  Similarity=0.412  Sum_probs=105.3

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|+....+..++..+.+||++|++.++..|..++++++++++|+|+++          ..++.+...++..+.....
T Consensus        29 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~   98 (164)
T 1r8s_A           29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVNEAREELMRMLAEDE   98 (164)
T ss_dssp             CCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGG
T ss_pred             cCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchh
Confidence            356676667777888999999999999999999999999999999999998          7888988899998887666


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCc--CCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFP--EYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~--~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      ..+.|++||+||+|+..+ ....++...+.  .. ...++.+++|||++|.||.++|+++.+.+.+
T Consensus        99 ~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A           99 LRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             GTTCEEEEEEECTTSTTC-CCHHHHHHHTTGGGC-SSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             hcCCeEEEEEECcCCcCC-CCHHHHHHHhCcccc-cCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence            678999999999998653 11122222211  11 3356789999999999999999999987754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.93  E-value=2.4e-25  Score=185.27  Aligned_cols=134  Identities=17%  Similarity=0.254  Sum_probs=107.1

Q ss_pred             eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      +.||+|+....+.+++..+.+||++|++.++..|..++++++++++|+|+++          ..++.+...++..++...
T Consensus        44 ~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~  113 (181)
T 1fzq_A           44 ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSAD----------RKRFEETGQELTELLEEE  113 (181)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTC----------GGGHHHHHHHHHHHTTCG
T ss_pred             ccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcC----------HHHHHHHHHHHHHHHhCh
Confidence            3578888877888889999999999999999999999999999999999998          788998888988887765


Q ss_pred             CCCCCcEEEEeecCCcccccccCCcccccCcC-CCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         235 WFMDTSIILFLNKNDLFQEKITKSPLTVCFPE-YTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~-~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      ...+.|+++++||+|+..+. ...++.+.+.. .....++.+++|||++|.||.++|+|+.+.+.+
T Consensus       114 ~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          114 KLSCVPVLIFANKQDLLTAA-PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             GGTTCCEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred             hhcCCCEEEEEECcCcccCC-CHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence            55789999999999987642 11222222110 003356789999999999999999999987754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.93  E-value=2.3e-25  Score=188.27  Aligned_cols=129  Identities=20%  Similarity=0.340  Sum_probs=99.1

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      ||+|.....+.+++..+.+|||+|++.++..|..|+++++++|+|+|+++          ..++.+...++..+......
T Consensus        55 ~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~----------~~s~~~~~~~~~~~~~~~~~  124 (198)
T 1f6b_A           55 PTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCAD----------HERLLESKEELDSLMTDETI  124 (198)
T ss_dssp             CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGG
T ss_pred             CCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCccc
Confidence            45555556777788999999999999999999999999999999999998          78899999999998876555


Q ss_pred             CCCcEEEEeecCCcccccccCCcccccCcCCC-------------CCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYT-------------DQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~-------------~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      .++|+++|+||+|+..+ +...++.+.+....             ..+.+.+++|||++|+||.++|+||.+.
T Consensus       125 ~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          125 ANVPILILGNKIDRPEA-ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             TTSCEEEEEECTTSTTC-CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             CCCcEEEEEECCCcccc-CCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence            68999999999998752 33333333222110             1246789999999999999999999764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.93  E-value=5.9e-25  Score=184.42  Aligned_cols=130  Identities=18%  Similarity=0.286  Sum_probs=104.8

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|.....+.+++..+.+|||+|++.++..|..++++++++|+|+|+++          ..++.+...++..+.....
T Consensus        52 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~  121 (190)
T 1m2o_B           52 QPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAAD----------PERFDEARVELDALFNIAE  121 (190)
T ss_dssp             CCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTC----------GGGHHHHHHHHHHHHTCGG
T ss_pred             ccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCC----------hHHHHHHHHHHHHHHcchh
Confidence            355566666778888999999999999999999999999999999999998          7889999999999877655


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCcCC--------CCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEY--------TDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~--------~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      ..+.|+++++||+|+..+ ....++.+.+...        .....+.+++|||++|.||.++|++|.+.
T Consensus       122 ~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          122 LKDVPFVILGNKIDAPNA-VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             GTTCCEEEEEECTTSTTC-CCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             hcCCCEEEEEECCCCcCC-CCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence            568999999999998762 3333333333221        12356789999999999999999999764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.92  E-value=9.5e-25  Score=182.44  Aligned_cols=135  Identities=17%  Similarity=0.293  Sum_probs=109.2

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|+....+.+++..+.+|||+|++.++..|..++++++++|+|+|+++          ..++.+...++..++....
T Consensus        51 ~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~  120 (189)
T 2x77_A           51 VPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTD----------RDRMGVAKHELYALLDEDE  120 (189)
T ss_dssp             CSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTC----------CTTHHHHHHHHHHHHTCST
T ss_pred             CCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhhhh
Confidence            467787777788889999999999999999999999999999999999998          7789999999999887666


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCc-CCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFP-EYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~-~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      ..+.|+++|+||+|+..+. ...++.+.+. .+...+++.+++|||++|.||.++|+++.+.+.++.
T Consensus       121 ~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  186 (189)
T 2x77_A          121 LRKSLLLIFANKQDLPDAA-SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQG  186 (189)
T ss_dssp             TTTCEEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred             cCCCeEEEEEECCCCcCCC-CHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhcc
Confidence            6789999999999987541 1112222211 011345678999999999999999999999886553

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=8.4e-25  Score=182.56  Aligned_cols=131  Identities=16%  Similarity=0.267  Sum_probs=103.1

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|+....+.+++..+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...++..+.....
T Consensus        45 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~  114 (187)
T 1zj6_A           45 SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD----------RERISVTREELYKMLAHED  114 (187)
T ss_dssp             ECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTC----------TTTHHHHHHHHHHHHTSGG
T ss_pred             cCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhchh
Confidence            567777777788889999999999999999999999999999999999998          7789999999999887654


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCc--CCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFP--EYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~--~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      ..+.|+++|+||+|+..+ ....++.+.+.  .+ ...++.+++|||++|.||.++|++|.+.+.
T Consensus       115 ~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~-~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (187)
T 1zj6_A          115 LRKAGLLIFANKQDVKEC-MTVAEISQFLKLTSI-KDHQWHIQACCALTGEGLCQGLEWMMSRLK  177 (187)
T ss_dssp             GTTCEEEEEEECTTSTTC-CCHHHHHHHHTGGGC-CSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred             hCCCeEEEEEECCCCcCC-CCHHHHHHHhChhhh-cCCCcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence            568999999999998753 22222222221  12 345678999999999999999999998764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.92  E-value=5.5e-25  Score=185.01  Aligned_cols=135  Identities=18%  Similarity=0.255  Sum_probs=107.3

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|+....++..++.+.+|||+|++.++..|..++++++++|+|+|+++          ..++.+...++..++....
T Consensus        48 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~~~~~  117 (199)
T 4bas_A           48 TATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSD----------HLRLCVVKSEIQAMLKHED  117 (199)
T ss_dssp             CCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTSHH
T ss_pred             ccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCc----------HHHHHHHHHHHHHHHhChh
Confidence            456777777778889999999999999999999999999999999999998          7889999899988876532


Q ss_pred             C-------CCCcEEEEeecCCcccccccCCcccccCcC--CCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         236 F-------MDTSIILFLNKNDLFQEKITKSPLTVCFPE--YTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       236 ~-------~~~piilv~NK~Dl~~~k~~~~~l~~~f~~--~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      .       .+.|++||+||+|+..+. ...++.+.+..  +....++.+++|||++|.||.++|++|.+.+.+..
T Consensus       118 ~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          118 IRRELPGGGRVPFLFFANKMDAAGAK-TAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             HHSBCTTSCBCCEEEEEECTTSTTCC-CHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             hhhcccccCCCCEEEEEECcCCCCCC-CHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence            2       278999999999987642 11222222110  00235678999999999999999999999987653

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.92  E-value=8.4e-25  Score=183.01  Aligned_cols=131  Identities=26%  Similarity=0.333  Sum_probs=106.4

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .+|+|+....+.+++..+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...++..+.....
T Consensus        52 ~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~  121 (190)
T 2h57_A           52 LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSD----------RLRMVVAKEELDTLLNHPD  121 (190)
T ss_dssp             CCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTC----------HHHHHHHHHHHHHHHHSTT
T ss_pred             CCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHhChh
Confidence            466677777888888999999999999999999999999999999999998          7788888899998887655


Q ss_pred             C--CCCcEEEEeecCCcccccccCCcccccC--cCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         236 F--MDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       236 ~--~~~piilv~NK~Dl~~~k~~~~~l~~~f--~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      .  .+.|++||+||+|+..+ ....++.+.+  ..+ ...++.++++||++|.||.++|++|.+.+.
T Consensus       122 ~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          122 IKHRRIPILFFANKMDLRDA-VTSVKVSQLLCLENI-KDKPWHICASDAIKGEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             TTTSCCCEEEEEECTTSTTC-CCHHHHHHHHTGGGC-CSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred             hccCCCeEEEEEeCcCcccC-CCHHHHHHHhChhhc-cCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence            5  67999999999998753 2222232222  222 235678999999999999999999998764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.92  E-value=7.5e-25  Score=184.08  Aligned_cols=131  Identities=25%  Similarity=0.423  Sum_probs=102.3

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|+....++.++..+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...++..+.....
T Consensus        58 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~l~~~~~~~~  127 (192)
T 2b6h_A           58 IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVQESADELQKMLQEDE  127 (192)
T ss_dssp             EEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTC----------GGGHHHHHHHHHHHHTCGG
T ss_pred             CCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHhcccc
Confidence            578888777888889999999999999999999999999999999999998          7789999999999887666


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCc--CCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFP--EYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~--~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      ..+.|++||+||+|+..+ ....++.+.+.  .. ...++.+++|||++|.||.++|++|.+.+.
T Consensus       128 ~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~-~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          128 LRDAVLLVFANKQDMPNA-MPVSELTDKLGLQHL-RSRTWYVQATCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             GTTCEEEEEEECTTSTTC-CCHHHHHHHTTGGGC-SSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred             cCCCeEEEEEECCCCCCC-CCHHHHHHHhCcccc-cCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence            678999999999998653 11122222211  11 335678999999999999999999998764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.92  E-value=8.6e-25  Score=182.87  Aligned_cols=133  Identities=19%  Similarity=0.296  Sum_probs=104.5

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|.....+..++..+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...++..++....
T Consensus        52 ~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~~~~~  121 (188)
T 1zd9_A           52 IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAAD----------QEKIEASKNELHNLLDKPQ  121 (188)
T ss_dssp             CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGG
T ss_pred             CCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCcc
Confidence            356676666677788999999999999999999999999999999999998          7889999999998887655


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCcC-CCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPE-YTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~-~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      ..+.|++||+||+|+..+ ....++.+.+.. .....++.+++|||++|.||.++|++|.+.+..
T Consensus       122 ~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          122 LQGIPVLVLGNKRDLPGA-LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             GTTCCEEEEEECTTSTTC-CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred             cCCCCEEEEEECCCCccC-CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            578999999999998753 111122221110 002356788999999999999999999886643

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.92  E-value=1.4e-24  Score=180.43  Aligned_cols=130  Identities=16%  Similarity=0.268  Sum_probs=105.1

Q ss_pred             eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      ..||+|+....+.+++..+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...++..+....
T Consensus        49 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~~~~  118 (181)
T 2h17_A           49 TSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD----------RERISVTREELYKMLAHE  118 (181)
T ss_dssp             EECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTC----------TTTHHHHHHHHHHHHTCG
T ss_pred             cCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCh
Confidence            3567777777788888999999999999999999999999999999999998          788999999999888765


Q ss_pred             CCCCCcEEEEeecCCcccccccCCcccccC--cCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         235 WFMDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~~f--~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      ...+.|+++|+||+|+..+ ....++.+.+  ..+ ...++.+++|||++|.||.++|++|.+.
T Consensus       119 ~~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~-~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          119 DLRKAGLLIFANKQDVKEC-MTVAEISQFLKLTSI-KDHQWHIQACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             GGTTCEEEEEEECTTSTTC-CCHHHHHHHTTGGGC-CSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred             hhCCCeEEEEEECCCcccC-CCHHHHHHHhCcccc-cCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence            4578999999999998653 2222222222  112 3356789999999999999999998764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.92  E-value=1.4e-24  Score=180.04  Aligned_cols=134  Identities=22%  Similarity=0.334  Sum_probs=104.9

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|+....+.+++..+.+||++|++.++..|..++++++++++|+|+++          ..++.+...++..+.....
T Consensus        47 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~  116 (183)
T 1moz_A           47 KPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTD----------KDRMSTASKELHLMLQEEE  116 (183)
T ss_dssp             CSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTC----------TTTHHHHHHHHHHHTTSST
T ss_pred             CCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHcChh
Confidence            467777777788888999999999999999999999999999999999998          7888999999998877655


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCcCCC-CCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ..+.|+++|+||+|+..+ ....++.+.+.... ...++.++++||++|.||.++|+++.+.+.++
T Consensus       117 ~~~~piilv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          117 LQDAALLVFANKQDQPGA-LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             TSSCEEEEEEECTTSTTC-CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             hCCCeEEEEEECCCCCCC-CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence            678999999999998753 22223333322110 23567899999999999999999999988654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.92  E-value=2.5e-24  Score=179.33  Aligned_cols=133  Identities=20%  Similarity=0.304  Sum_probs=108.3

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|+....+.+++..+++|||+|++.++..|..++++++++|+|+|+++          ..++.+...++..++....
T Consensus        47 ~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~  116 (186)
T 1ksh_A           47 SPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------RQRMQDCQRELQSLLVEER  116 (186)
T ss_dssp             CCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGG
T ss_pred             cccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHhChh
Confidence            456677777788889999999999999999999999999999999999998          7889999999999887655


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCc--CCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFP--EYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~--~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ..+.|+++|+||+|+..+. ...++.+.+.  .. ...++.+++|||++|.|+.++|+++.+.+.++
T Consensus       117 ~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          117 LAGATLLIFANKQDLPGAL-SCNAIQEALELDSI-RSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             GTTCEEEEEEECTTSTTCC-CHHHHHHHTTGGGC-CSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             cCCCcEEEEEeCccCCCCC-CHHHHHHHhChhhc-cCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            6789999999999987642 2122222221  11 34577899999999999999999999987654

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.91  E-value=2e-24  Score=180.96  Aligned_cols=136  Identities=15%  Similarity=0.124  Sum_probs=97.3

Q ss_pred             eeeecceeEEEEEe-----cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHH
Q psy8318         155 RVKTTGIIETHFTF-----KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDS  229 (313)
Q Consensus       155 ~~~T~g~~~~~~~~-----~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~  229 (313)
                      ..||+|+......+     ..+.+++|||+|++.++..|..++++++++|+|+|+++.  ...+  ....+.+...|+..
T Consensus        53 ~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~--~~~~--~~~s~~~l~~~l~~  128 (198)
T 3t1o_A           53 DERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPN--RLRA--NAESMRNMRENLAE  128 (198)
T ss_dssp             SCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGG--GHHH--HHHHHHHHHHHHHH
T ss_pred             cccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcc--hhhH--hHHHHHHHHHHHHh
Confidence            44666654433222     347899999999999999999999999999999999941  0000  13445555555555


Q ss_pred             HHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         230 ICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       230 ~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      +  .....++|++||+||+|+..+ ....+..+.+.    ..++ .++++||++|.||.++|++|.+.+.++.
T Consensus       129 ~--~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~  194 (198)
T 3t1o_A          129 Y--GLTLDDVPIVIQVNKRDLPDA-LPVEMVRAVVD----PEGKFPVLEAVATEGKGVFETLKEVSRLVLARV  194 (198)
T ss_dssp             T--TCCTTSSCEEEEEECTTSTTC-CCHHHHHHHHC----TTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             h--ccccCCCCEEEEEEchhcccc-cCHHHHHHHHH----hcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence            4  234467999999999998764 33333333332    2455 7899999999999999999999987663

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.91  E-value=2.4e-24  Score=178.86  Aligned_cols=125  Identities=15%  Similarity=0.128  Sum_probs=82.9

Q ss_pred             EEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318         164 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI  241 (313)
Q Consensus       164 ~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi  241 (313)
                      ..+.+++  +.+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...|+..+... ...++|+
T Consensus        48 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~pi  116 (183)
T 2fu5_C           48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITN----------EKSFDNIRNWIRNIEEH-ASADVEK  116 (183)
T ss_dssp             EEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHH-SCTTCEE
T ss_pred             EEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCCCE
Confidence            3445554  789999999999999999999999999999999998          67777777777776543 2357899


Q ss_pred             EEEeecCCcccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhh
Q psy8318         242 ILFLNKNDLFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLK  303 (313)
Q Consensus       242 ilv~NK~Dl~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~  303 (313)
                      +||+||+|+..++. ...+.....    ...++.+++|||++|.||.++|++|.+.+..+..+
T Consensus       117 ilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~~  175 (183)
T 2fu5_C          117 MILGNKCDVNDKRQVSKERGEKLA----LDYGIKFMETSAKANINVENAFFTLARDIKAKMDK  175 (183)
T ss_dssp             EEEEEC--CCSCCCSCHHHHHHHH----HHHTCEEEECCC---CCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECccCCccCcCCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence            99999999875422 112222211    12356899999999999999999999998876443

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.91  E-value=1e-23  Score=174.16  Aligned_cols=128  Identities=19%  Similarity=0.297  Sum_probs=98.7

Q ss_pred             eEEEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCC
Q psy8318         162 IETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDT  239 (313)
Q Consensus       162 ~~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~  239 (313)
                      ....+.+.+  +.+.+||++|++.++..|..++.+++++|+|+|+++          ..++.+...|+..+...  ..+.
T Consensus        47 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~  114 (181)
T 3tw8_B           47 KIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTS----------AESFVNVKRWLHEINQN--CDDV  114 (181)
T ss_dssp             EEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHH--CTTS
T ss_pred             EEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh--CCCC
Confidence            334455555  789999999999999999999999999999999998          67788777777777543  2478


Q ss_pred             cEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhhh
Q psy8318         240 SIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKD  304 (313)
Q Consensus       240 piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~~  304 (313)
                      |++||+||+|+..++.........+.   ...++.++++||++|.|+.++|+++.+.+.....+.
T Consensus       115 p~ilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  176 (181)
T 3tw8_B          115 CRILVGNKNDDPERKVVETEDAYKFA---GQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN  176 (181)
T ss_dssp             EEEEEEECTTCGGGCCSCHHHHHHHH---HHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCchhcccCHHHHHHHH---HHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhhhh
Confidence            99999999998765322212111121   113567899999999999999999999998765544

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.90  E-value=1.3e-23  Score=173.64  Aligned_cols=119  Identities=13%  Similarity=0.196  Sum_probs=80.6

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC---CCCCCCcEEEEee
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS---KWFMDTSIILFLN  246 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~---~~~~~~piilv~N  246 (313)
                      ...+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...|+..+...   ....+.|+++|+|
T Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n  126 (182)
T 1ky3_A           57 VATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTN----------ASSFENIKSWRDEFLVHANVNSPETFPFVILGN  126 (182)
T ss_dssp             CEEEEEECCC----------CCSTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEE
T ss_pred             EEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCC----------hHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEE
Confidence            3689999999999999999999999999999999998          66666666666665442   2235789999999


Q ss_pred             cCCccccc-c-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         247 KNDLFQEK-I-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       247 K~Dl~~~k-~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      |+|+.... . ....... +..  ....+.++++||++|.||.++|++|.+.+.+++
T Consensus       127 K~Dl~~~~~~v~~~~~~~-~~~--~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          127 KIDAEESKKIVSEKSAQE-LAK--SLGDIPLFLTSAKNAINVDTAFEEIARSALQQN  180 (182)
T ss_dssp             CTTSCGGGCCSCHHHHHH-HHH--HTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             CCccccccccCCHHHHHH-HHH--hcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence            99985432 1 1112222 111  024567899999999999999999999887653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.90  E-value=1.2e-23  Score=177.94  Aligned_cols=123  Identities=15%  Similarity=0.213  Sum_probs=95.7

Q ss_pred             EEEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc
Q psy8318         163 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS  240 (313)
Q Consensus       163 ~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p  240 (313)
                      ...+.+++  +.+.+||++|++.++..|..++++++++|+|+|+++          ..++++...|+..+.... ..++|
T Consensus        68 ~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~i~~~~-~~~~p  136 (201)
T 2hup_A           68 MKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITK----------RSSFLSVPHWIEDVRKYA-GSNIV  136 (201)
T ss_dssp             EEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTB----------HHHHHTHHHHHHHHHHHS-CTTCE
T ss_pred             EEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCCCC
Confidence            34455544  789999999999999999999999999999999998          677777777777775532 35789


Q ss_pred             EEEEeecCCccccc-ccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         241 IILFLNKNDLFQEK-ITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       241 iilv~NK~Dl~~~k-~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ++||+||+|+..++ +...+..+..    ...++ .+++|||++|.||.++|++|.+.+..+
T Consensus       137 iilv~NK~Dl~~~~~v~~~~~~~~~----~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~  194 (201)
T 2hup_A          137 QLLIGNKSDLSELREVSLAEAQSLA----EHYDILCAIETSAKDSSNVEEAFLRVATELIMR  194 (201)
T ss_dssp             EEEEEECTTCGGGCCSCHHHHHHHH----HHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCccccccccCHHHHHHHH----HHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999987642 2222222221    12355 789999999999999999999998765

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.90  E-value=3.5e-24  Score=176.71  Aligned_cols=131  Identities=17%  Similarity=0.262  Sum_probs=93.5

Q ss_pred             eecc--eeEEEEEecC---ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318         157 KTTG--IIETHFTFKD---LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC  231 (313)
Q Consensus       157 ~T~g--~~~~~~~~~~---~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~  231 (313)
                      ||+|  +....+.+.+   ..+++||++|++.++..|..++++++++|+|+|+++          ..++++...|+..+.
T Consensus        37 ~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~  106 (178)
T 2hxs_A           37 QTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITN----------YQSFENLEDWYTVVK  106 (178)
T ss_dssp             HTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred             CceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence            4444  3344555544   789999999999999999999999999999999998          566666666665554


Q ss_pred             hCC-CCCCCc-EEEEeecCCccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         232 NSK-WFMDTS-IILFLNKNDLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       232 ~~~-~~~~~p-iilv~NK~Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      ... ...+.| ++||+||+|+..++ +....... +.   ...++.++++||++|.||.++|++|.+.+.+..
T Consensus       107 ~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~-~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  175 (178)
T 2hxs_A          107 KVSEESETQPLVALVGNKIDLEHMRTIKPEKHLR-FC---QENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK  175 (178)
T ss_dssp             HHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHH-HH---HHHTCEEEEECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred             HHhcccCCCCeEEEEEEccccccccccCHHHHHH-HH---HHcCCcEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence            310 011344 89999999987642 21112222 21   123568899999999999999999999886543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.90  E-value=1.9e-23  Score=173.62  Aligned_cols=122  Identities=16%  Similarity=0.184  Sum_probs=93.4

Q ss_pred             EEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318         164 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI  241 (313)
Q Consensus       164 ~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi  241 (313)
                      ..+..++  +.+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...++..+.... ..+.|+
T Consensus        50 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~pi  118 (186)
T 2bme_A           50 KIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS----------RETYNALTNWLTDARMLA-SQNIVI  118 (186)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHS-CTTCEE
T ss_pred             EEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhc-CCCCcE
Confidence            3444444  789999999999999999999999999999999998          667777777776654422 257899


Q ss_pred             EEEeecCCcccccccC-CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         242 ILFLNKNDLFQEKITK-SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       242 ilv~NK~Dl~~~k~~~-~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +||+||+|+..++... .+... +.   ...++.++++||++|.||.++|+++.+.+.++
T Consensus       119 ilv~nK~Dl~~~~~~~~~~~~~-~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  174 (186)
T 2bme_A          119 ILCGNKKDLDADREVTFLEASR-FA---QENELMFLETSALTGENVEEAFVQCARKILNK  174 (186)
T ss_dssp             EEEEECGGGGGGCCSCHHHHHH-HH---HHTTCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEEEECcccccccccCHHHHHH-HH---HHcCCEEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999986532111 12221 11   22457899999999999999999999988765

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.90  E-value=2.7e-23  Score=169.40  Aligned_cols=119  Identities=18%  Similarity=0.138  Sum_probs=79.9

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ..+.+.+||++|++.++..|..++++++++++|+|+++          ..++++...++..+.......++|+++|+||+
T Consensus        47 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~  116 (166)
T 3q72_A           47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTD----------KGSFEKASELRVQLRRARQTDDVPIILVGNKS  116 (166)
T ss_dssp             EEEEEEEEECC---------------CCEEEEEEETTC----------HHHHHHHHHHHHHHHHCC---CCCEEEEEECT
T ss_pred             EEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEecc
Confidence            34678999999999999999999999999999999998          78888888898888776556789999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |+..++....+....+.   ...++.++++||++|.|+.++|+++.+.+..+
T Consensus       117 Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  165 (166)
T 3q72_A          117 DLVRSREVSVDEGRACA---VVFDCKFIETSAALHHNVQALFEGVVRQIRLR  165 (166)
T ss_dssp             TCCSSCCSCHHHHHHHH---HHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             ccccccccCHHHHHHHH---HHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence            98754322222222222   12457899999999999999999999988654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.90  E-value=3.4e-23  Score=173.42  Aligned_cols=122  Identities=15%  Similarity=0.191  Sum_probs=94.3

Q ss_pred             EEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318         165 HFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII  242 (313)
Q Consensus       165 ~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii  242 (313)
                      .+.+++  +.+++||++|++.++..|..++++++++|+|+|+++          ..++.+...++..+... ...+.|++
T Consensus        62 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~l~~i~~~-~~~~~pii  130 (191)
T 2a5j_A           62 MVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLTSWLEDARQH-SSSNMVIM  130 (191)
T ss_dssp             EEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEE
T ss_pred             EEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCCEE
Confidence            444443  689999999999999999999999999999999998          67777777777776543 23578999


Q ss_pred             EEeecCCcccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         243 LFLNKNDLFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       243 lv~NK~Dl~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      ||+||+|+..++. ....... +.   ...++.++++||++|.||.++|++|.+.+.++.
T Consensus       131 lv~nK~Dl~~~~~v~~~~~~~-~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  186 (191)
T 2a5j_A          131 LIGNKSDLESRRDVKREEGEA-FA---REHGLIFMETSAKTACNVEEAFINTAKEIYRKI  186 (191)
T ss_dssp             EEEECTTCGGGCCSCHHHHHH-HH---HHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             EEEECcccCCccccCHHHHHH-HH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999865322 1112222 11   123568999999999999999999999987653

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.90  E-value=2.2e-23  Score=172.08  Aligned_cols=117  Identities=18%  Similarity=0.179  Sum_probs=93.5

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      ..+.+||++|++.++..|..++++++++++|+|+++          ..++.+...++..++......+.|+++|+||+|+
T Consensus        57 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  126 (181)
T 2fn4_A           57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAIND----------RQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL  126 (181)
T ss_dssp             EEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred             EEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            678999999999999999999999999999999998          7788888888888765444567899999999998


Q ss_pred             ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ...+.........+.   ...++.++++||++|.|+.++|++|.+.+.+.
T Consensus       127 ~~~~~v~~~~~~~~~---~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  173 (181)
T 2fn4_A          127 ESQRQVPRSEASAFG---ASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY  173 (181)
T ss_dssp             GGGCCSCHHHHHHHH---HHTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ccccccCHHHHHHHH---HHcCCeEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence            764222111112222   22467899999999999999999999988765

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.90  E-value=1.8e-23  Score=176.59  Aligned_cols=120  Identities=15%  Similarity=0.174  Sum_probs=93.1

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ..+.+.+||++|++.++..|..++++++++|+|+|+++          ..++.....++..+.......++|++||+||+
T Consensus        70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~  139 (201)
T 3oes_A           70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTS----------LHSFQVIESLYQKLHEGHGKTRVPVVLVGNKA  139 (201)
T ss_dssp             -CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTC----------HHHHHHHHHHHHHHHC-----CCCEEEEEECT
T ss_pred             EEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            56789999999999999999999999999999999998          78888888888888765555678999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      |+..++.........+.   ...++.++++||++|.||.++|++|.+.+.+..
T Consensus       140 Dl~~~~~v~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~  189 (201)
T 3oes_A          140 DLSPEREVQAVEGKKLA---ESWGATFMESSARENQLTQGIFTKVIQEIARVE  189 (201)
T ss_dssp             TCGGGCCSCHHHHHHHH---HHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred             cCccccccCHHHHHHHH---HHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence            98754322211111221   124568999999999999999999999987654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.90  E-value=3.1e-23  Score=173.07  Aligned_cols=118  Identities=17%  Similarity=0.242  Sum_probs=93.7

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      ...+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...++..+.......+.|+++|+||+|
T Consensus        69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  138 (195)
T 3bc1_A           69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTN----------EQSFLNVRNWISQLQMHAYSENPDIVLCGNKSD  138 (195)
T ss_dssp             EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTT
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence            3589999999999999999999999999999999998          677777778888776654446789999999999


Q ss_pred             ccccccc-CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         250 LFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       250 l~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      +..++.. .....+...    ..++.++++||++|.||.++|++|.+.+.++.
T Consensus       139 l~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  187 (195)
T 3bc1_A          139 LEDQRAVKEEEARELAE----KYGIPYFETSAANGTNISHAIEMLLDLIMKRM  187 (195)
T ss_dssp             CGGGCCSCHHHHHHHHH----HHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cccccccCHHHHHHHHH----HcCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            8764221 122222211    13467899999999999999999999987654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.89  E-value=2e-23  Score=172.61  Aligned_cols=115  Identities=16%  Similarity=0.236  Sum_probs=90.5

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      ...+.+||++|++.++..|..++++++++|+|+|+++          ..++++...++..+.... ..+.|+++|+||+|
T Consensus        60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~D  128 (181)
T 2efe_B           60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTN----------QASFERAKKWVQELQAQG-NPNMVMALAGNKSD  128 (181)
T ss_dssp             EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTT
T ss_pred             EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCc
Confidence            4689999999999999999999999999999999998          677788888887776532 35789999999999


Q ss_pred             cccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         250 LFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       250 l~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      +...+. ...+..+..    ...++.++++||++|.||.++|++|.+.+..
T Consensus       129 l~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  175 (181)
T 2efe_B          129 LLDARKVTAEDAQTYA----QENGLFFMETSAKTATNVKEIFYEIARRLPR  175 (181)
T ss_dssp             CTTTCCSCHHHHHHHH----HHTTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred             ccccccCCHHHHHHHH----HHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            865321 112222221    1245789999999999999999999887654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=3e-23  Score=173.60  Aligned_cols=118  Identities=14%  Similarity=0.174  Sum_probs=93.5

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ..+.+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...|+..+.......+.|++||+||+
T Consensus        62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~  131 (195)
T 1x3s_A           62 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTR----------RDTFVKLDNWLNELETYCTRNDIVNMLVGNKI  131 (195)
T ss_dssp             EEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHTTCCSCSCCEEEEEEECT
T ss_pred             eEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCcCCCcEEEEEECC
Confidence            34789999999999999999999999999999999998          67777777788877654444678999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |+....+.........    ...++.++++||+++.||.++|++|.+.+.+.
T Consensus       132 Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  179 (195)
T 1x3s_A          132 DKENREVDRNEGLKFA----RKHSMLFIEASAKTCDGVQCAFEELVEKIIQT  179 (195)
T ss_dssp             TSSSCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             cCcccccCHHHHHHHH----HHcCCEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence            9854333222222221    22456799999999999999999999988753

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.89  E-value=4.3e-23  Score=172.93  Aligned_cols=118  Identities=16%  Similarity=0.245  Sum_probs=93.1

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ....+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...++..+... ...+.|++||+||+
T Consensus        72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~----------~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~  140 (193)
T 2oil_A           72 AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTK----------HQTYAVVERWLKELYDH-AEATIVVMLVGNKS  140 (193)
T ss_dssp             EEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHTT-SCTTCEEEEEEECG
T ss_pred             EEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCeEEEEEECC
Confidence            34789999999999999999999999999999999998          67777777777777543 23578999999999


Q ss_pred             Cccccccc-CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         249 DLFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       249 Dl~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      |+...+.. ...... +.   ...++.++++||++|.||.++|++|.+.+.++.
T Consensus       141 Dl~~~~~~~~~~~~~-~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  190 (193)
T 2oil_A          141 DLSQAREVPTEEARM-FA---ENNGLLFLETSALDSTNVELAFETVLKEIFAKV  190 (193)
T ss_dssp             GGGGGCCSCHHHHHH-HH---HHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             CcccccccCHHHHHH-HH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            98764211 112221 21   124578999999999999999999999987653

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.89  E-value=3.1e-23  Score=173.03  Aligned_cols=118  Identities=18%  Similarity=0.218  Sum_probs=90.0

Q ss_pred             EEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318         165 HFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII  242 (313)
Q Consensus       165 ~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii  242 (313)
                      .+.+.+  +.+++|||+|++.++     ++++++++++|+|+++          ..++++...|+..+.......+.|++
T Consensus        59 ~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~pii  123 (184)
T 3ihw_A           59 EIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLED----------EISFQTVYNYFLRLCSFRNASEVPMV  123 (184)
T ss_dssp             EEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHTTSCGGGSCEE
T ss_pred             EEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence            344444  678899999998776     7889999999999998          78888888888888765444678999


Q ss_pred             EEeecCCcccc---cccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         243 LFLNKNDLFQE---KITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       243 lv~NK~Dl~~~---k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |++||+|+...   .+...+.......+   ..+.+++|||++|.||.++|+++.+.+.+.
T Consensus       124 lv~nK~Dl~~~~~~~v~~~~~~~~~~~~---~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~  181 (184)
T 3ihw_A          124 LVGTQDAISAANPRVIDDSRARKLSTDL---KRCTYYETCATYGLNVERVFQDVAQKVVAL  181 (184)
T ss_dssp             EEEECTTCBTTBCCCSCHHHHHHHHHHT---TTCEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EEEECcccccccccccCHHHHHHHHHHc---CCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence            99999998532   12222222222222   236789999999999999999999988765

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.89  E-value=3.8e-23  Score=174.92  Aligned_cols=118  Identities=14%  Similarity=0.180  Sum_probs=89.7

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC---CCCCCCcEEEEeec
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS---KWFMDTSIILFLNK  247 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~---~~~~~~piilv~NK  247 (313)
                      +.+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...|+..+...   ....+.|++||+||
T Consensus        57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK  126 (207)
T 1vg8_A           57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTA----------PNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK  126 (207)
T ss_dssp             EEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEEC
T ss_pred             EEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence            689999999999999999999999999999999998          56666665666555432   22246899999999


Q ss_pred             CCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         248 NDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       248 ~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      +|+................   ..++.++++||++|.||.++|++|.+.+.+..
T Consensus       127 ~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  177 (207)
T 1vg8_A          127 IDLENRQVATKRAQAWCYS---KNNIPYFETSAKEAINVEQAFQTIARNALKQE  177 (207)
T ss_dssp             TTSSCCCSCHHHHHHHHHH---TTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             CCCcccccCHHHHHHHHHh---cCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            9987432222222222110   24567899999999999999999999987654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.89  E-value=6.3e-23  Score=173.76  Aligned_cols=122  Identities=17%  Similarity=0.214  Sum_probs=93.4

Q ss_pred             EEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318         165 HFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII  242 (313)
Q Consensus       165 ~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii  242 (313)
                      .+.+++  +.+.+||++|++.++..|..++++++++|+|+|+++          ..++.....|+..+.... ..+.|++
T Consensus        49 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~pii  117 (206)
T 2bcg_Y           49 TVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTD----------QESFNGVKMWLQEIDRYA-TSTVLKL  117 (206)
T ss_dssp             EEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS-CTTCEEE
T ss_pred             EEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhc-CCCCCEE
Confidence            444443  689999999999999999999999999999999998          677777777777665432 3478999


Q ss_pred             EEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         243 LFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       243 lv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ||+||+|+..++....+....+.   ...++.++++||++|.||.++|++|.+.+...
T Consensus       118 lv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~  172 (206)
T 2bcg_Y          118 LVGNKCDLKDKRVVEYDVAKEFA---DANKMPFLETSALDSTNVEDAFLTMARQIKES  172 (206)
T ss_dssp             EEEECTTCTTTCCSCHHHHHHHH---HHTTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCccccccCHHHHHHHH---HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999998764221111111121   12356789999999999999999999988764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.89  E-value=5.2e-23  Score=172.44  Aligned_cols=125  Identities=18%  Similarity=0.201  Sum_probs=95.7

Q ss_pred             EEEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc
Q psy8318         163 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS  240 (313)
Q Consensus       163 ~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p  240 (313)
                      ...+.+.+  +.+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...++..+... ...+.|
T Consensus        55 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p  123 (196)
T 3tkl_A           55 IRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD----------QESFNNVKQWLQEIDRY-ASENVN  123 (196)
T ss_dssp             EEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCE
T ss_pred             EEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCCC
Confidence            34455544  789999999999999999999999999999999998          67777777777666442 235789


Q ss_pred             EEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         241 IILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       241 iilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      ++||+||+|+..++.........+.   ...++.++++||++|.||.++|++|.+.+..+.
T Consensus       124 ~ilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~  181 (196)
T 3tkl_A          124 KLLVGNKCDLTTKKVVDYTTAKEFA---DSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM  181 (196)
T ss_dssp             EEEEEECTTCTTTCCSCHHHHHHHH---HHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             EEEEEECcccccccccCHHHHHHHH---HHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            9999999998764322211112222   124567999999999999999999999998654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.89  E-value=4.6e-23  Score=169.86  Aligned_cols=130  Identities=12%  Similarity=0.200  Sum_probs=94.4

Q ss_pred             eeccee--EEEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318         157 KTTGII--ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN  232 (313)
Q Consensus       157 ~T~g~~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~  232 (313)
                      ||+|..  ...+.+++  +.+.+||++|++.++..|..++++++++++|+|+++          ..++.+...|+..+..
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~  107 (177)
T 1wms_A           38 HTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDD----------SQSFQNLSNWKKEFIY  107 (177)
T ss_dssp             -CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHH
T ss_pred             CceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHHH
Confidence            444533  33444444  689999999999999999999999999999999998          5666665555555543


Q ss_pred             ---CCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         233 ---SKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       233 ---~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                         .....+.|+++|+||+|+...........+....   ...+.++++||++|.|+.++|+++.+.+++
T Consensus       108 ~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          108 YADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD---NGDYPYFETSAKDATNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             HHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH---TTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HccccccCCCcEEEEEECCcccccccCHHHHHHHHHh---cCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence               2223578999999999987433322222222211   245678999999999999999999998864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.89  E-value=4.1e-23  Score=171.04  Aligned_cols=118  Identities=14%  Similarity=0.101  Sum_probs=91.8

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+.+||++|++.++..|..++++++++++|+|+++          ..+++....++..+.......++|++||+||+|+
T Consensus        54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  123 (181)
T 3t5g_A           54 YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTS----------IKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL  123 (181)
T ss_dssp             EEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHC----CCEEEEEECTTC
T ss_pred             EEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            678999999999999999999999999999999998          7888888888888766544567899999999998


Q ss_pred             ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      ..++....+....+.   ...++.++++||++|.||.++|+++.+.+...+
T Consensus       124 ~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  171 (181)
T 3t5g_A          124 HMERVISYEEGKALA---ESWNAAFLESSAKENQTAVDVFRRIILEAEKMD  171 (181)
T ss_dssp             TTTCCSCHHHHHHHH---HHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred             hhcceecHHHHHHHH---HHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            654322211111122   224568999999999999999999999887553

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=1.1e-23  Score=176.39  Aligned_cols=118  Identities=16%  Similarity=0.236  Sum_probs=92.8

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ..+.+.+||++|++.++..|..++++++++|+|+|+++          ..+++....|+..+.. ....+.|++||+||+
T Consensus        70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~  138 (191)
T 3dz8_A           70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN----------EESFNAVQDWATQIKT-YSWDNAQVILVGNKC  138 (191)
T ss_dssp             TTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHH-HSCTTCEEEEEEECT
T ss_pred             EEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcC----------HHHHHHHHHHHHHHHH-hcCCCCCEEEEEECC
Confidence            45789999999999999999999999999999999998          6777766676666644 234578999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |+..++....+....+.   ...++.++++||++|.||.++|++|.+.+.++
T Consensus       139 Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  187 (191)
T 3dz8_A          139 DMEEERVVPTEKGQLLA---EQLGFDFFEASAKENISVRQAFERLVDAICDK  187 (191)
T ss_dssp             TCGGGCCSCHHHHHHHH---HHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCccccccCHHHHHHHH---HHcCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            98764332222222222   12456899999999999999999999988765

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.89  E-value=2.4e-23  Score=172.74  Aligned_cols=115  Identities=16%  Similarity=0.110  Sum_probs=90.8

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...++..+.......+.|++||+||+|+
T Consensus        66 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  135 (183)
T 3kkq_A           66 AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTD----------KASFEHVDRFHQLILRVKDRESFPMILVANKVDL  135 (183)
T ss_dssp             EEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred             EEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCc
Confidence            567889999999999999999999999999999998          6777777777777765444467899999999998


Q ss_pred             cccccc-CCcccccCcCCCCCCCeEEEEeecc-cCcCHHHHHHHHHHHHHH
Q psy8318         251 FQEKIT-KSPLTVCFPEYTDQKEIYTHFTCAT-DTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       251 ~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~-~~~~v~~~f~~i~~~i~~  299 (313)
                      ...+.. ..+......    ..++.++++||+ +|.||.++|+++.+.+.+
T Consensus       136 ~~~~~v~~~~~~~~~~----~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          136 MHLRKVTRDQGKEMAT----KYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             STTCCSCHHHHHHHHH----HHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             hhccCcCHHHHHHHHH----HhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            753222 222222221    134679999999 999999999999998864

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.89  E-value=4.8e-23  Score=187.48  Aligned_cols=133  Identities=23%  Similarity=0.384  Sum_probs=104.6

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|+....++.+++.+++|||+|++.++..|..++++++++|+|+|+++          ..++.+...++..++....
T Consensus       194 ~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~----------~~s~~~~~~~~~~~~~~~~  263 (329)
T 3o47_A          194 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVNEAREELMRMLAEDE  263 (329)
T ss_dssp             EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTC----------SSSHHHHHHHHHHHHTCGG
T ss_pred             ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc----------hHHHHHHHHHHHHHHhhhc
Confidence            478898888888899999999999999999999999999999999999998          7889999999999887766


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCcC-CCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPE-YTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~-~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      ..++|++||+||+|+..+. ...++...+.. +....++.+++|||++|.||.++|++|.+.+.+
T Consensus       264 ~~~~piilV~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          264 LRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             GTTCEEEEEEECTTSTTCC-CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred             cCCCeEEEEEECccCCccc-CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence            6789999999999987642 11122221111 113457889999999999999999999988754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=3.5e-23  Score=171.01  Aligned_cols=117  Identities=16%  Similarity=0.206  Sum_probs=81.0

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...++..+.... ..+.|++||+||+|+
T Consensus        60 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl  128 (180)
T 2g6b_A           60 VKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTN----------KASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDS  128 (180)
T ss_dssp             EEEEEEECCCC--------CCGGGCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCST
T ss_pred             EEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCCcEEEEEECccc
Confidence            689999999999999999999999999999999998          566666666666665432 257899999999998


Q ss_pred             ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      ..++....+....+.   ...++.++++||++|.||.++|+++.+.+.++.
T Consensus       129 ~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  176 (180)
T 2g6b_A          129 AHERVVKREDGEKLA---KEYGLPFMETSAKTGLNVDLAFTAIAKELKRRS  176 (180)
T ss_dssp             TSCCCSCHHHHHHHH---HHHTCCEEECCTTTCTTHHHHHHHHHHHHHC--
T ss_pred             CcccccCHHHHHHHH---HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            754221111111111   123567899999999999999999999886543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.89  E-value=4.9e-23  Score=174.02  Aligned_cols=122  Identities=16%  Similarity=0.174  Sum_probs=94.1

Q ss_pred             EEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318         164 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI  241 (313)
Q Consensus       164 ~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi  241 (313)
                      ..+.+++  ..+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...|+..+.... ..+.|+
T Consensus        65 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~pi  133 (200)
T 2o52_A           65 RVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS----------RETYNSLAAWLTDARTLA-SPNIVV  133 (200)
T ss_dssp             EEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHT-CTTCEE
T ss_pred             EEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhc-CCCCcE
Confidence            3444444  789999999999999999999999999999999998          677777777777765432 257899


Q ss_pred             EEEeecCCccccccc-CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         242 ILFLNKNDLFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       242 ilv~NK~Dl~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +||+||+|+..++.. ..+... +.   ...++.+++|||++|.||.++|++|.+.+..+
T Consensus       134 ilv~nK~Dl~~~~~v~~~~~~~-~~---~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~  189 (200)
T 2o52_A          134 ILCGNKKDLDPEREVTFLEASR-FA---QENELMFLETSALTGENVEEAFLKCARTILNK  189 (200)
T ss_dssp             EEEEECGGGGGGCCSCHHHHHH-HH---HHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCcccccccCHHHHHH-HH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            999999998654221 112221 11   22457899999999999999999999998765

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=7.4e-23  Score=173.35  Aligned_cols=121  Identities=16%  Similarity=0.212  Sum_probs=92.0

Q ss_pred             EEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318         165 HFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII  242 (313)
Q Consensus       165 ~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii  242 (313)
                      .+.+++  +.+++||++|++.++..|..++++++++|+|+|+++          ..++.....|+..+... ...+.|++
T Consensus        67 ~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~----------~~s~~~~~~~~~~i~~~-~~~~~pii  135 (201)
T 2ew1_A           67 TVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITC----------EESFRCLPEWLREIEQY-ASNKVITV  135 (201)
T ss_dssp             EEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEE
T ss_pred             EEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCCEE
Confidence            444544  689999999999999999999999999999999998          66676666666665432 23568999


Q ss_pred             EEeecCCcccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         243 LFLNKNDLFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       243 lv~NK~Dl~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ||+||+|+..++. ....... +.   ...++.+++|||++|.||.++|+++.+.+..+
T Consensus       136 lv~NK~Dl~~~~~v~~~~~~~-~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~  190 (201)
T 2ew1_A          136 LVGNKIDLAERREVSQQRAEE-FS---EAQDMYYLETSAKESDNVEKLFLDLACRLISE  190 (201)
T ss_dssp             EEEECGGGGGGCSSCHHHHHH-HH---HHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCccccccCHHHHHH-HH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999875321 1112211 21   12356789999999999999999999988765

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.89  E-value=5.6e-23  Score=167.44  Aligned_cols=115  Identities=16%  Similarity=0.128  Sum_probs=90.4

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+.+||++|++.++..|..++++++++++|+|+++          ..++.+...++..+.......+.|+++++||+|
T Consensus        50 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  119 (167)
T 1c1y_A           50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITA----------QSTFNDLQDLREQILRVKDTEDVPMILVGNKCD  119 (167)
T ss_dssp             EEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTT
T ss_pred             EEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcc
Confidence            4679999999999999999999999999999999998          677777777777776543346789999999999


Q ss_pred             ccccccc-CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         250 LFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       250 l~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +..++.. ..........+   ..+.++++||++|.|+.++|+++.+.+
T Consensus       120 l~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          120 LEDERVVGKEQGQNLARQW---CNCAFLESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             CGGGCCSCHHHHHHHHHHT---TSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ccccccCCHHHHHHHHHHc---cCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence            8764322 12222221111   256799999999999999999998876

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.89  E-value=1.4e-22  Score=169.36  Aligned_cols=116  Identities=18%  Similarity=0.246  Sum_probs=90.7

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      ...+.+||++|++.++..|..++++++++|+|+|+++          ..++.....|+..+... ...+.|++||+||+|
T Consensus        70 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D  138 (189)
T 2gf9_A           70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIAN----------QESFAAVQDWATQIKTY-SWDNAQVILVGNKCD  138 (189)
T ss_dssp             EEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTT
T ss_pred             EEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcc
Confidence            4789999999999999999999999999999999998          66777777777666442 235789999999999


Q ss_pred             cccccccC-CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         250 LFQEKITK-SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       250 l~~~k~~~-~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +..++... ....+..    ...++.++++||++|.|+.++|++|.+.+.++
T Consensus       139 l~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          139 LEDERVVPAEDGRRLA----DDLGFEFFEASAKENINVKQVFERLVDVICEK  186 (189)
T ss_dssp             CGGGCCSCHHHHHHHH----HHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             cccccCCCHHHHHHHH----HHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            87642211 1222211    11356899999999999999999999988654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.89  E-value=4e-23  Score=176.42  Aligned_cols=118  Identities=18%  Similarity=0.286  Sum_probs=92.6

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      ...+.+||++|++.++..|..++++++++|||+|+++          ..++.+...|+..+.......++|++||+||+|
T Consensus        83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~----------~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~D  152 (217)
T 2f7s_A           83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTS----------QQSFLNVRNWMSQLQANAYCENPDIVLIGNKAD  152 (217)
T ss_dssp             EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTC----------HHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTT
T ss_pred             eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCc
Confidence            5789999999999999999999999999999999998          677777777777665443336799999999999


Q ss_pred             ccccccc-CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         250 LFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       250 l~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      +..++.. .....+ +.   ...++.+++|||++|.||.++|++|.+.+.++.
T Consensus       153 l~~~~~v~~~~~~~-~~---~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~  201 (217)
T 2f7s_A          153 LPDQREVNERQARE-LA---DKYGIPYFETSAATGQNVEKAVETLLDLIMKRM  201 (217)
T ss_dssp             CGGGCCSCHHHHHH-HH---HHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             cccccccCHHHHHH-HH---HHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            8764221 112222 11   123567899999999999999999999987653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.89  E-value=4.5e-23  Score=167.84  Aligned_cols=116  Identities=17%  Similarity=0.176  Sum_probs=89.2

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+.+||++|++.++..|..++++++++++|+|+++          ..++.....++..+.......+.|+++++||+|
T Consensus        51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  120 (168)
T 1u8z_A           51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE----------MESFAATADFREQILRVKEDENVPFLLVGNKSD  120 (168)
T ss_dssp             EEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGG
T ss_pred             EEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence            3689999999999999999999999999999999998          677888878877776644445789999999999


Q ss_pred             cccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         250 LFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       250 l~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      +..++. ...+.....    ...++.++++||++|.|+.++|+++.+.+.+
T Consensus       121 l~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          121 LEDKRQVSVEEAKNRA----DQWNVNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             GGGGCCSCHHHHHHHH----HHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             ccccCccCHHHHHHHH----HHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence            875422 111222221    1235679999999999999999999998753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.89  E-value=6e-23  Score=167.90  Aligned_cols=113  Identities=12%  Similarity=0.123  Sum_probs=80.9

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...|+..+... ...+.|+++|+||+|+
T Consensus        55 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl  123 (170)
T 1z08_A           55 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITD----------EDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDL  123 (170)
T ss_dssp             EEEEEEECCCC-------CCSSTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGG
T ss_pred             EEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCCeEEEEEECccc
Confidence            689999999999999999999999999999999998          66777776666665432 2246899999999998


Q ss_pred             ccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         251 FQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       251 ~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      ..++. ...+..+..    ...++.++++||++|.|+.++|++|.+.+.
T Consensus       124 ~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  168 (170)
T 1z08_A          124 EKERHVSIQEAESYA----ESVGAKHYHTSAKQNKGIEELFLDLCKRMI  168 (170)
T ss_dssp             GGGCCSCHHHHHHHH----HHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             ccccccCHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence            76422 111222221    123567899999999999999999998875

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.89  E-value=9.9e-23  Score=167.37  Aligned_cols=117  Identities=15%  Similarity=0.101  Sum_probs=84.2

Q ss_pred             ceeeeEecCCCcc--ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         171 LHFKMFDVGGQRS--ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       171 ~~~~i~D~~Gq~~--~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      +.+.+||++|++.  ++..+..++++++++++|+|+++          ..++.....++..+.......+.|+++|+||+
T Consensus        52 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~  121 (175)
T 2nzj_A           52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIAD----------RGSFESASELRIQLRRTHQADHVPIILVGNKA  121 (175)
T ss_dssp             EEEEEECCC-------CHHHHHTTTSCSEEEEEEETTC----------HHHHHHHHHHHHHHHHCC----CCEEEEEECT
T ss_pred             EEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhccCCCCEEEEEECh
Confidence            5789999999988  56677788999999999999998          77888888888777665444579999999999


Q ss_pred             Cccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         249 DLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       249 Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      |+..++ +...+... +.   ...++.+++|||++|.||.++|++|.+.+..+.
T Consensus       122 Dl~~~~~v~~~~~~~-~~---~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  171 (175)
T 2nzj_A          122 DLARCREVSVEEGRA-CA---VVFDCKFIETSATLQHNVAELFEGVVRQLRLRR  171 (175)
T ss_dssp             TCTTTCCSCHHHHHH-HH---HHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             hhccccccCHHHHHH-HH---HHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence            987532 21111111 11   113467999999999999999999999887543

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.89  E-value=3.4e-23  Score=169.03  Aligned_cols=114  Identities=18%  Similarity=0.202  Sum_probs=88.8

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      ...+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...++..+.... ..+.|+++++||+|
T Consensus        51 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~D  119 (170)
T 1ek0_A           51 TVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTK----------PQSFIKARHWVKELHEQA-SKDIIIALVGNKID  119 (170)
T ss_dssp             EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGG
T ss_pred             EEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCC----------hHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCC
Confidence            4689999999999999999999999999999999998          677888878877776532 35789999999999


Q ss_pred             cccccccCC---cccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         250 LFQEKITKS---PLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       250 l~~~k~~~~---~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +..+.-...   .....+.   ...++.++++||++|.|+.++|+++.+.+
T Consensus       120 l~~~~~~~~v~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          120 XLQEGGERKVAREEGEKLA---EEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             GGGSSCCCCSCHHHHHHHH---HHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             ccccccccCCCHHHHHHHH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            875411111   1111111   12356899999999999999999998754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.89  E-value=1.2e-22  Score=171.60  Aligned_cols=118  Identities=16%  Similarity=0.173  Sum_probs=94.5

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+.+||++|++.++..|..++++++++|+|+|+++          ..++.....|+..+.......+.|++||+||+|+
T Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  131 (206)
T 2bov_A           62 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE----------MESFAATADFREQILRVKEDENVPFLLVGNKSDL  131 (206)
T ss_dssp             EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTC
T ss_pred             EEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCc
Confidence            689999999999999999999999999999999998          6788888888888766544457999999999998


Q ss_pred             cccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318         251 FQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANL  302 (313)
Q Consensus       251 ~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~  302 (313)
                      ...+ +...+......    ..++.++++||++|.||.++|++|.+.+..+..
T Consensus       132 ~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~  180 (206)
T 2bov_A          132 EDKRQVSVEEAKNRAE----QWNVNYVETSAKTRANVDKVFFDLMREIRARKM  180 (206)
T ss_dssp             GGGCCSCHHHHHHHHH----HHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHH----HhCCeEEEEeCCCCCCHHHHHHHHHHHHHHccc
Confidence            7642 11122222221    235679999999999999999999999987543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.88  E-value=6.8e-23  Score=171.92  Aligned_cols=123  Identities=17%  Similarity=0.190  Sum_probs=91.5

Q ss_pred             EEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318         164 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI  241 (313)
Q Consensus       164 ~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi  241 (313)
                      ..+.+++  +.+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...|+..+.. ....+.|+
T Consensus        66 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~----------~~s~~~~~~~~~~i~~-~~~~~~pi  134 (192)
T 2il1_A           66 KTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK----------KETFDDLPKWMKMIDK-YASEDAEL  134 (192)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHH-HSCTTCEE
T ss_pred             EEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHH-hcCCCCcE
Confidence            3444443  689999999999999999999999999999999998          5666666666555433 23357899


Q ss_pred             EEEeecCCccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         242 ILFLNKNDLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       242 ilv~NK~Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +||+||+|+..++ +...........+   .++.++++||++|.||.++|++|.+.+.++
T Consensus       135 ilV~NK~Dl~~~~~v~~~~~~~~~~~~---~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~  191 (192)
T 2il1_A          135 LLVGNKLDCETDREITRQQGEKFAQQI---TGMRFCEASAKDNFNVDEIFLKLVDDILKK  191 (192)
T ss_dssp             EEEEECGGGGGGCCSCHHHHHHHHHTS---TTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             EEEEECcccccccccCHHHHHHHHHhc---CCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999987542 2112222221111   356889999999999999999999988643

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.88  E-value=9e-23  Score=169.27  Aligned_cols=118  Identities=16%  Similarity=0.168  Sum_probs=94.3

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+.+||++|++.++..|..++++++++|+|+|+++          ..++.....++..+.......+.|++||+||+|+
T Consensus        66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  135 (187)
T 2a9k_A           66 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE----------MESFAATADFREQILRVKEDENVPFLLVGNKSDL  135 (187)
T ss_dssp             EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGG
T ss_pred             EEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            689999999999999999999999999999999998          6778888888877766444457899999999998


Q ss_pred             ccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318         251 FQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANL  302 (313)
Q Consensus       251 ~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~  302 (313)
                      ..++. ...+..+..    ...++.++++||+++.||.++|++|.+.+..+..
T Consensus       136 ~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  184 (187)
T 2a9k_A          136 EDKRQVSVEEAKNRA----EQWNVNYVETSAKTRANVDKVFFDLMREIRARKM  184 (187)
T ss_dssp             GGGCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             cccCccCHHHHHHHH----HHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Confidence            76421 112222222    1235689999999999999999999999876643

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.88  E-value=1.7e-22  Score=170.29  Aligned_cols=115  Identities=17%  Similarity=0.230  Sum_probs=87.8

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      +.+.+||++|++.++..|..++.+++++|+|+|+++          ..++.+.. .|+..+...  ..+.|++||+||+|
T Consensus        68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D  135 (201)
T 2q3h_A           68 VRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVS----------PSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSD  135 (201)
T ss_dssp             EEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGG
T ss_pred             EEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHh
Confidence            678899999999999999999999999999999998          67777776 466555432  23789999999999


Q ss_pred             cccccc-------------cCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         250 LFQEKI-------------TKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       250 l~~~k~-------------~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      +..+..             ....... +.   ...+. .+++|||++|.||.++|++|.+.+....
T Consensus       136 l~~~~~~~~~~~~~~~~~v~~~~~~~-~~---~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  197 (201)
T 2q3h_A          136 LREDVKVLIELDKCKEKPVPEEAAKL-LA---EEIKAASYIECSALTQKNLKEVFDAAIVAGIQYS  197 (201)
T ss_dssp             GGGCHHHHHHHHTTTCCCCCHHHHHH-HH---HHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             hhhchhhhhhhcccccccCCHHHHHH-HH---HhcCCcEEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence            875311             1111111 11   11233 7899999999999999999999887654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.88  E-value=1.2e-22  Score=165.89  Aligned_cols=113  Identities=17%  Similarity=0.222  Sum_probs=89.3

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      +..+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...++..+.... ..+.|++||+||+|
T Consensus        54 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D  122 (170)
T 1r2q_A           54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN----------EESFARAKNWVKELQRQA-SPNIVIALSGNKAD  122 (170)
T ss_dssp             EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGG
T ss_pred             EEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcc
Confidence            5789999999999999999999999999999999998          677887777877776532 35789999999999


Q ss_pred             cccccccC-CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         250 LFQEKITK-SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       250 l~~~k~~~-~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +..++... .+.....    ...++.++++||++|.|+.++|++|.+.+
T Consensus       123 l~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          123 LANKRAVDFQEAQSYA----DDNSLLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             GGGGCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             CccccccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            86542211 1222211    22457899999999999999999998754

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.88  E-value=9.5e-23  Score=166.66  Aligned_cols=118  Identities=14%  Similarity=0.125  Sum_probs=87.7

Q ss_pred             CceeeeEecCCCccccc-cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         170 DLHFKMFDVGGQRSERK-KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~-~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .+.+.+||++|++.++. .|..++++++++++|+|+++          ..++.+...++..+.......++|+++|+||+
T Consensus        50 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~  119 (169)
T 3q85_A           50 EVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTD----------RRSFSKVPETLLRLRAGRPHHDLPVILVGNKS  119 (169)
T ss_dssp             EEEEEEECCCCC--------CHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred             EEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCC----------hHHHHHHHHHHHHHHhcccCCCCCEEEEeeCc
Confidence            36788999999998876 88888999999999999998          78888888888888775555689999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |+..++....+....+.   ...++.++++||++|.|+.++|+++.+.+..+
T Consensus       120 Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          120 DLARSREVSLEEGRHLA---GTLSCKHIETSAALHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             TCGGGCCSCHHHHHHHH---HHTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             chhhcccCCHHHHHHHH---HHcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence            98754222212112222   22456899999999999999999999988654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=1.5e-22  Score=169.78  Aligned_cols=116  Identities=15%  Similarity=0.126  Sum_probs=90.3

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ....+.+||++|++.++..|..++++++++|+|+|+++          ..++.....|+..+... ...+.|+++|+||+
T Consensus        70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~  138 (192)
T 2fg5_A           70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITK----------QDSFYTLKKWVKELKEH-GPENIVMAIAGNKC  138 (192)
T ss_dssp             SEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC----------THHHHHHHHHHHHHHHH-SCTTCEEEEEEECG
T ss_pred             EEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHh-CCCCCcEEEEEECc
Confidence            34789999999999999999999999999999999998          67777777777766543 23578999999999


Q ss_pred             Cccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         249 DLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       249 Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      |+..++ +...+..+..    ...++.++++||++|.||.++|++|.+.+.+
T Consensus       139 Dl~~~~~v~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  186 (192)
T 2fg5_A          139 DLSDIREVPLKDAKEYA----ESIGAIVVETSAKNAINIEELFQGISRQIPP  186 (192)
T ss_dssp             GGGGGCCSCHHHHHHHH----HTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred             ccccccccCHHHHHHHH----HHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence            987532 2222222222    2245789999999999999999999887643

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.88  E-value=6.8e-23  Score=171.24  Aligned_cols=122  Identities=18%  Similarity=0.243  Sum_probs=90.5

Q ss_pred             EEEEecC--ceeeeEecCCCcccc-ccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc
Q psy8318         164 THFTFKD--LHFKMFDVGGQRSER-KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS  240 (313)
Q Consensus       164 ~~~~~~~--~~~~i~D~~Gq~~~r-~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p  240 (313)
                      ..+.+++  +.+.+||++|++.++ ..|..++++++++|+|+|+++          ..++.....|+..+.......+.|
T Consensus        60 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~i~~~~~~~~~p  129 (189)
T 1z06_A           60 RAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTN----------MASFHSLPAWIEECKQHLLANDIP  129 (189)
T ss_dssp             EEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHHCCCSCCC
T ss_pred             EEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCCCCCC
Confidence            3444443  789999999999998 899999999999999999998          677777777777776544346789


Q ss_pred             EEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccC---cCHHHHHHHHHHHHH
Q psy8318         241 IILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDT---SNIQFVFDAVTDVII  298 (313)
Q Consensus       241 iilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~---~~v~~~f~~i~~~i~  298 (313)
                      ++||+||+|+..++....+....+.   ...++.++++||+++   +||.++|++|.+.+.
T Consensus       130 iilv~nK~Dl~~~~~v~~~~~~~~~---~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          130 RILVGNKCDLRSAIQVPTDLAQKFA---DTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             EEEEEECTTCGGGCCSCHHHHHHHH---HHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred             EEEEEECccccccceeCHHHHHHHH---HHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence            9999999998754221111112222   124567899999999   999999999988764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.88  E-value=7.4e-23  Score=171.69  Aligned_cols=116  Identities=13%  Similarity=0.182  Sum_probs=87.1

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+++||++|++.++..|..++++++++|+|+|+++          ..++.+....|...+.. ...+.|++||+||+|
T Consensus        70 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D  138 (194)
T 3reg_A           70 EFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNN----------RTSFDNISTKWEPEIKH-YIDTAKTVLVGLKVD  138 (194)
T ss_dssp             EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHH-HCTTSEEEEEEECGG
T ss_pred             EEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHH-hCCCCCEEEEEEChh
Confidence            4678999999999999999999999999999999998          77777764433333332 235789999999999


Q ss_pred             ccccc---ccCCcccccCcCCCCCCCeE-EEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         250 LFQEK---ITKSPLTVCFPEYTDQKEIY-THFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       250 l~~~k---~~~~~l~~~f~~~~~~~~~~-~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +..+.   +..........    ..++. ++++||++|.||.++|+++.+.+..+
T Consensus       139 l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  189 (194)
T 3reg_A          139 LRKDGSDDVTKQEGDDLCQ----KLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN  189 (194)
T ss_dssp             GCCTTTTCCCHHHHHHHHH----HHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred             hccCCCCcccHHHHHHHHH----hcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence            87531   11112222111    12344 89999999999999999999988754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.88  E-value=4.9e-23  Score=167.93  Aligned_cols=114  Identities=14%  Similarity=0.171  Sum_probs=89.1

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      ...+.+||++|++.++..|..++++++++++|+|+++          ..++.+...++..+....  .+.|+++|+||+|
T Consensus        53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~--~~~piilv~nK~D  120 (168)
T 1z2a_A           53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTD----------RESFEAISSWREKVVAEV--GDIPTALVQNKID  120 (168)
T ss_dssp             EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHHH--CSCCEEEEEECGG
T ss_pred             EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhC--CCCCEEEEEECcc
Confidence            4689999999999999999999999999999999998          666777777777665432  5689999999999


Q ss_pred             cccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         250 LFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       250 l~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      +...+. .........    ...++.++++||++|.|+.++|++|.+.+.+
T Consensus       121 l~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          121 LLDDSCIKNEEAEGLA----KRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             GGGGCSSCHHHHHHHH----HHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             cCcccccCHHHHHHHH----HHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            875422 122222221    1235688999999999999999999987753

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.88  E-value=8.1e-23  Score=168.38  Aligned_cols=115  Identities=17%  Similarity=0.182  Sum_probs=88.4

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      ...+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...|+..+... ...+.|+++|+||+|
T Consensus        63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~D  131 (179)
T 1z0f_A           63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDARNL-TNPNTVIILIGNKAD  131 (179)
T ss_dssp             EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTT
T ss_pred             EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcC----------HHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcc
Confidence            4689999999999999999999999999999999998          56666666666665442 224789999999999


Q ss_pred             ccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         250 LFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       250 l~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      +..++ +...+..+..    ...++.++++||++|.||.++|+++.+.+.+
T Consensus       132 l~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          132 LEAQRDVTYEEAKQFA----EENGLLFLEASAKTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             CGGGCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             cccccccCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            86532 1112222222    1245789999999999999999999987753

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.88  E-value=1.4e-22  Score=171.12  Aligned_cols=117  Identities=16%  Similarity=0.231  Sum_probs=91.7

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+.+||++|++.++..|..++++++++|+|+|+++          ..++.....|+..+... ...+.|++||+||+|
T Consensus        56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D  124 (203)
T 1zbd_A           56 RIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITN----------EESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCD  124 (203)
T ss_dssp             EEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTC----------HHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTT
T ss_pred             EEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcc
Confidence            4789999999999999999999999999999999998          67777777777776542 235789999999999


Q ss_pred             cccccccC-CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         250 LFQEKITK-SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       250 l~~~k~~~-~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      +...+... ..... +.   ...++.++++||++|.||.++|++|.+.+.++.
T Consensus       125 l~~~~~~~~~~~~~-~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  173 (203)
T 1zbd_A          125 MEDERVVSSERGRQ-LA---DHLGFEFFEASAKDNINVKQTFERLVDVICEKM  173 (203)
T ss_dssp             CTTSCCSCHHHHHH-HH---HHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred             cCcccccCHHHHHH-HH---HHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            86542211 11111 11   113567999999999999999999999887654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.88  E-value=6.2e-23  Score=175.42  Aligned_cols=116  Identities=16%  Similarity=0.216  Sum_probs=88.5

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHH-HHHHHHHHhCCCCCCCcEEEEeec
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIES-MKLFDSICNSKWFMDTSIILFLNK  247 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~-~~~~~~~~~~~~~~~~piilv~NK  247 (313)
                      ..+.+.+||++|++.++..|..++++++++|+|+|+++          ..++.++ ..|+..+...  ..++|++||+||
T Consensus        73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK  140 (214)
T 3q3j_B           73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR----------PETVDSALKKWRTEILDY--CPSTRVLLIGCK  140 (214)
T ss_dssp             CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------THHHHHHHTHHHHHHHHH--CTTSEEEEEEEC
T ss_pred             EEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEEC
Confidence            44789999999999999999999999999999999998          7788774 4455555432  257899999999


Q ss_pred             CCcccc-------------cccCCcccccCcCCCCCCCe-EEEEeecccCcC-HHHHHHHHHHHHHHh
Q psy8318         248 NDLFQE-------------KITKSPLTVCFPEYTDQKEI-YTHFTCATDTSN-IQFVFDAVTDVIIKA  300 (313)
Q Consensus       248 ~Dl~~~-------------k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~-v~~~f~~i~~~i~~~  300 (313)
                      +|+..+             .+...+... +.   ...++ .+++|||++|.| |.++|+++.+.+...
T Consensus       141 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~---~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~  204 (214)
T 3q3j_B          141 TDLRTDLSTLMELSHQKQAPISYEQGCA-IA---KQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK  204 (214)
T ss_dssp             GGGGGCHHHHHHHHHTTCCCCCHHHHHH-HH---HHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred             hhhccchhhhhhhcccccCccCHHHHHH-HH---HHcCCCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence            998753             111111111 11   22356 789999999998 999999999988644

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.88  E-value=2.5e-22  Score=164.07  Aligned_cols=114  Identities=16%  Similarity=0.093  Sum_probs=88.3

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      ...+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...++..+... ...+.|+++|+||+|
T Consensus        54 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~D  122 (170)
T 1z0j_A           54 LHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITK----------EETFSTLKNWVRELRQH-GPPSIVVAIAGNKCD  122 (170)
T ss_dssp             EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTT
T ss_pred             EEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCc
Confidence            4789999999999999999999999999999999998          66777776777666542 335789999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +...+....+....+.   ...++.++++||++|.|+.++|++|.+.+
T Consensus       123 l~~~~~v~~~~~~~~~---~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          123 LTDVREVMERDAKDYA---DSIHAIFVETSAKNAININELFIEISRRI  167 (170)
T ss_dssp             CGGGCCSCHHHHHHHH---HHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             cccccccCHHHHHHHH---HHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            8754221111111121   12356899999999999999999998765

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.88  E-value=1.4e-22  Score=165.54  Aligned_cols=121  Identities=15%  Similarity=0.217  Sum_probs=91.3

Q ss_pred             EEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEE
Q psy8318         165 HFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSII  242 (313)
Q Consensus       165 ~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pii  242 (313)
                      .+.+++  +.+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...++..+... ...+.|++
T Consensus        44 ~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~pii  112 (170)
T 1g16_A           44 TVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD----------ERTFTNIKQWFKTVNEH-ANDEAQLL  112 (170)
T ss_dssp             EEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEE
T ss_pred             EEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCcEE
Confidence            444433  689999999999999999999999999999999998          56666666677666543 22478999


Q ss_pred             EEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         243 LFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       243 lv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +|+||+|+..............    ...++.++++||++|.||.++|+++.+.+.++
T Consensus       113 lv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          113 LVGNKSDMETRVVTADQGEALA----KELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             EEEECTTCTTCCSCHHHHHHHH----HHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             EEEECccCCcCccCHHHHHHHH----HHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            9999999844322222222211    11346789999999999999999999988654

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.88  E-value=1.7e-22  Score=168.02  Aligned_cols=117  Identities=15%  Similarity=0.087  Sum_probs=91.0

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+.+||++|++.++..|..++++++++++|+|+++          ..++.+...++..+.......+.|+++|+||+|+
T Consensus        52 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl  121 (189)
T 4dsu_A           52 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN----------TKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL  121 (189)
T ss_dssp             EEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTS
T ss_pred             EEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccC
Confidence            568899999999999999999999999999999998          7788888888887766545567999999999998


Q ss_pred             ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      ..............    ...++.++++||++|.|+.++|+++.+.+....
T Consensus       122 ~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  168 (189)
T 4dsu_A          122 PSRTVDTKQAQDLA----RSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK  168 (189)
T ss_dssp             SSCSSCHHHHHHHH----HHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhh
Confidence            75432222222211    113467899999999999999999999987654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.88  E-value=5.2e-23  Score=171.99  Aligned_cols=115  Identities=15%  Similarity=0.136  Sum_probs=85.0

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC--CCCCCcEEEEee
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK--WFMDTSIILFLN  246 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~--~~~~~piilv~N  246 (313)
                      +.+.+++|||+|++.++. +..++++++++|+|+|+++          ..++.+...|+..+....  ...++|++||+|
T Consensus        67 ~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n  135 (187)
T 3c5c_A           67 QPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDS----------RQSFDSSSSYLELLALHAKETQRSIPALLLGN  135 (187)
T ss_dssp             EEEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred             EEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhhccCCCCCEEEEEE
Confidence            347899999999998887 4779999999999999998          778888877777765431  124789999999


Q ss_pred             cCCccccc-ccCCcccccCcCCCCCCCeEEEEeec-ccCcCHHHHHHHHHHHHH
Q psy8318         247 KNDLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCA-TDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       247 K~Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA-~~~~~v~~~f~~i~~~i~  298 (313)
                      |+|+..++ +...+..+..    ...++.+++||| ++|.||.++|++|.+.+.
T Consensus       136 K~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          136 KLDMAQYRQVTKAEGVALA----GRFGCLFFEVSACLDFEHVQHVFHEAVREAR  185 (187)
T ss_dssp             CGGGGGGCSSCHHHHHHHH----HHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred             CcchhhcCccCHHHHHHHH----HHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence            99986542 2212222211    123568999999 899999999999998774

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.88  E-value=8.5e-23  Score=166.02  Aligned_cols=116  Identities=16%  Similarity=0.126  Sum_probs=91.4

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      ...+.+||++|++.++..|..++++++++++|+|+++          ..++++...++..+.......+.|+++|+||+|
T Consensus        50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  119 (167)
T 1kao_A           50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVN----------QQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD  119 (167)
T ss_dssp             EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGG
T ss_pred             EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence            3569999999999999999999999999999999998          778888888888877654446799999999999


Q ss_pred             ccccccc-CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         250 LFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       250 l~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      +..++.. ...... +.   ...++.++++||++|.|+.++|++|.+.+.+
T Consensus       120 l~~~~~~~~~~~~~-~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  166 (167)
T 1kao_A          120 LESEREVSSSEGRA-LA---EEWGCPFMETSAKSKTMVDELFAEIVRQMNY  166 (167)
T ss_dssp             GGGGCCSCHHHHHH-HH---HHHTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCHHHHHH-HH---HHhCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            8653221 111111 11   1134578999999999999999999987753

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.9e-22  Score=173.29  Aligned_cols=123  Identities=14%  Similarity=0.220  Sum_probs=92.0

Q ss_pred             EEEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc
Q psy8318         163 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS  240 (313)
Q Consensus       163 ~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p  240 (313)
                      ...+.+++  +.+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...|+..+... ...+.|
T Consensus        52 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~----------~~s~~~~~~~l~~i~~~-~~~~~p  120 (223)
T 3cpj_B           52 TRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISK----------SSSYENCNHWLSELREN-ADDNVA  120 (223)
T ss_dssp             EEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CC----------HHHHHHHHHHHHHHHHH-CC--CE
T ss_pred             EEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHh-CCCCCe
Confidence            33455554  789999999999999999999999999999999998          67788877777776543 235789


Q ss_pred             EEEEeecCCcccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         241 IILFLNKNDLFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       241 iilv~NK~Dl~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ++||+||+|+...+. ...+... +.   ...++.++++||++|.||.++|++|.+.+.++
T Consensus       121 iilv~nK~Dl~~~~~v~~~~~~~-~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  177 (223)
T 3cpj_B          121 VGLIGNKSDLAHLRAVPTEESKT-FA---QENQLLFTETSALNSENVDKAFEELINTIYQK  177 (223)
T ss_dssp             EEEEECCGGGGGGCCSCHHHHHH-HH---HHTTCEEEECCCC-CCCHHHHHHHHHHHHTTC
T ss_pred             EEEEEECcccccccccCHHHHHH-HH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            999999999875321 1112222 21   12457899999999999999999999988754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.88  E-value=4.4e-23  Score=174.39  Aligned_cols=121  Identities=12%  Similarity=0.132  Sum_probs=85.9

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC--CCCCcEEEEeec
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW--FMDTSIILFLNK  247 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~--~~~~piilv~NK  247 (313)
                      .+.+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...|+..+.....  ..+.|++||+||
T Consensus        72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK  141 (208)
T 2yc2_C           72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSS----------MESFESCKAWFELLKSARPDRERPLRAVLVANK  141 (208)
T ss_dssp             EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTC----------HHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEEC
T ss_pred             EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhhcccccCCcEEEEEEC
Confidence            4689999999999999999999999999999999998          6788888888887765432  257899999999


Q ss_pred             CCccc-cc-ccCCcccccCcCCCCCCCeEEEEeeccc-CcCHHHHHHHHHHHHHHhhhhh
Q psy8318         248 NDLFQ-EK-ITKSPLTVCFPEYTDQKEIYTHFTCATD-TSNIQFVFDAVTDVIIKANLKD  304 (313)
Q Consensus       248 ~Dl~~-~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~-~~~v~~~f~~i~~~i~~~~~~~  304 (313)
                      +|+.. .+ +...+..+...    ..++.++++||++ |.||.++|++|.+.+.+...++
T Consensus       142 ~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~~~  197 (208)
T 2yc2_C          142 TDLPPQRHQVRLDMAQDWAT----TNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDK  197 (208)
T ss_dssp             C-------CCCHHHHHHHHH----HTTCEEEECCC-------CHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhccCCHHHHHHHHH----HcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHHHhh
Confidence            99876 32 22222222222    2357899999999 9999999999999888665443

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.88  E-value=3.6e-22  Score=167.76  Aligned_cols=113  Identities=20%  Similarity=0.235  Sum_probs=89.1

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      ..+.+||++|++.++..|..+++.++++|+|+|+++          ..++.+...|+..+....   +.|+++|+||+|.
T Consensus        93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~----------~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~  159 (208)
T 3clv_A           93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN----------SNTLDRAKTWVNQLKISS---NYIIILVANKIDK  159 (208)
T ss_dssp             EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS---CCEEEEEEECTTC
T ss_pred             eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHhhC---CCcEEEEEECCCc
Confidence            679999999999999999999999999999999998          677777777777776532   3899999999993


Q ss_pred             ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ........+..+...    ..++.++++||++|.|+.++|++|.+.+.++
T Consensus       160 ~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          160 NKFQVDILEVQKYAQ----DNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             C-CCSCHHHHHHHHH----HTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHH----HcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            222222223333222    2456899999999999999999999988754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.88  E-value=1.4e-22  Score=170.72  Aligned_cols=117  Identities=15%  Similarity=0.137  Sum_probs=90.8

Q ss_pred             CceeeeEecCCCccccc-cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         170 DLHFKMFDVGGQRSERK-KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~-~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .+.+.+||++|++.++. +|..|+++++++|+|+|+++          ..++.+...|+..+.......++|++||+||+
T Consensus        71 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~  140 (195)
T 3cbq_A           71 EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTD----------RRSFSKVPETLLRLRAGRPHHDLPVILVGNKS  140 (195)
T ss_dssp             EEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred             EEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEeech
Confidence            36789999999988765 88889999999999999998          77888888888877654433578999999999


Q ss_pred             Ccccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         249 DLFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       249 Dl~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |+..++. ...+... +.   ...++.+++|||++|.||+++|+++.+.+...
T Consensus       141 Dl~~~~~v~~~~~~~-~a---~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~  189 (195)
T 3cbq_A          141 DLARSREVSLEEGRH-LA---GTLSCKHIETSAALHHNTRELFEGAVRQIRLR  189 (195)
T ss_dssp             TCTTTCCSCHHHHHH-HH---HHTTCEEEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred             hccccCCcCHHHHHH-HH---HHhCCEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence            9875322 1112211 21   12346789999999999999999999988654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=3.9e-22  Score=170.26  Aligned_cols=117  Identities=15%  Similarity=0.114  Sum_probs=89.0

Q ss_pred             ceeeeEecCCCcc-ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         171 LHFKMFDVGGQRS-ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       171 ~~~~i~D~~Gq~~-~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      +.+.+|||+|+.. ++.++..|++.++++|+|+|+++          ..+++....|+..+.......++|++||+||+|
T Consensus        87 ~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~----------~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~D  156 (211)
T 2g3y_A           87 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITD----------RASFEKASELRIQLRRARQTEDIPIILVGNKSD  156 (211)
T ss_dssp             EEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTC----------HHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTT
T ss_pred             eEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChH
Confidence            5678999999987 56677888999999999999998          788888888877775433345799999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +..++....+....+.   ...++.+++|||++|.||.++|++|.+.+..+
T Consensus       157 L~~~r~v~~~e~~~~a---~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~  204 (211)
T 2g3y_A          157 LVRCREVSVSEGRACA---VVFDCKFIETSAAVQHNVKELFEGIVRQVRLR  204 (211)
T ss_dssp             CGGGCCSCHHHHHHHH---HHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HhcCceEeHHHHHHHH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            8753221111111111   12356789999999999999999999988643

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=1.8e-22  Score=169.65  Aligned_cols=116  Identities=14%  Similarity=0.122  Sum_probs=90.7

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      ...+.+||++|++. +..|..++++++++|+|+|+++          ..++++...++..+.......++|++||+||+|
T Consensus        75 ~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D  143 (196)
T 2atv_A           75 VVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITD----------RGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD  143 (196)
T ss_dssp             EEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGG
T ss_pred             EEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcc
Confidence            47799999999988 8899999999999999999998          677777777777765543345789999999999


Q ss_pred             ccccc-ccCCcccccCcCCCCCCCeEEEEeecccCc-CHHHHHHHHHHHHHHh
Q psy8318         250 LFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTS-NIQFVFDAVTDVIIKA  300 (313)
Q Consensus       250 l~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~-~v~~~f~~i~~~i~~~  300 (313)
                      +..++ +...+... +.   ...++.++++||++|. ||.++|++|.+.+.++
T Consensus       144 l~~~~~v~~~~~~~-~~---~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~  192 (196)
T 2atv_A          144 LDHSRQVSTEEGEK-LA---TELACAFYECSACTGEGNITEIFYELCREVRRR  192 (196)
T ss_dssp             GGGGCCSCHHHHHH-HH---HHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred             cccccccCHHHHHH-HH---HHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhh
Confidence            87642 11112211 11   1235689999999999 9999999999998765

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.87  E-value=3.6e-22  Score=166.71  Aligned_cols=120  Identities=15%  Similarity=0.086  Sum_probs=80.7

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+.+||++|++.++..|..+++.++++++|+|+++          ..++.+...++..+.......+.|+++|+||+|+
T Consensus        69 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl  138 (190)
T 3con_A           69 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN----------SKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL  138 (190)
T ss_dssp             EEEEEEECCC-----------CTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred             EEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcC
Confidence            679999999999999999999999999999999998          6677777666666544333346899999999998


Q ss_pred             ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhhh
Q psy8318         251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLKD  304 (313)
Q Consensus       251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~~  304 (313)
                      ........+..+...    ..++.++++||++|.|+.++|++|.+.+.+...++
T Consensus       139 ~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  188 (190)
T 3con_A          139 PTRTVDTKQAHELAK----SYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK  188 (190)
T ss_dssp             SCCCSCHHHHHHHHH----HHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC---
T ss_pred             CcccCCHHHHHHHHH----HcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            763222222222221    13457899999999999999999999987765443

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.87  E-value=2.6e-22  Score=170.44  Aligned_cols=115  Identities=13%  Similarity=0.135  Sum_probs=85.6

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHH-HHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIES-MKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~-~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .+.+.+||++|++.++..|..++++++++|+|+|+++          ..++.+. ..|+..+...  ..+.|++||+||+
T Consensus        75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~  142 (205)
T 1gwn_A           75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR----------PETLDSVLKKWKGEIQEF--CPNTKMLLVGCKS  142 (205)
T ss_dssp             EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTCEEEEEEECG
T ss_pred             EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHH--CCCCCEEEEEech
Confidence            4789999999999999999999999999999999998          6777776 3455554332  2478999999999


Q ss_pred             Cccccc-------------ccCCcccccCcCCCCCCCeEEEEeecc-cCcCHHHHHHHHHHHHHH
Q psy8318         249 DLFQEK-------------ITKSPLTVCFPEYTDQKEIYTHFTCAT-DTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       249 Dl~~~k-------------~~~~~l~~~f~~~~~~~~~~~~~tSA~-~~~~v~~~f~~i~~~i~~  299 (313)
                      |+..+.             +...+.......+   ..+.+++|||+ ++.||.++|+++.+.++.
T Consensus       143 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          143 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQI---GAATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             GGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH---TCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhccchhhhhhhcccccCCCCHHHHHHHHHHc---CCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            987421             1111111111111   12578999999 689999999999998764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=4.6e-22  Score=166.73  Aligned_cols=112  Identities=12%  Similarity=0.143  Sum_probs=85.4

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      +.+.+||++|++.++..|..++++++++|+|+|+++          ..++.+.. .|+..+...  ..++|++||+||+|
T Consensus        66 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D  133 (194)
T 2atx_A           66 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN----------PASFQNVKEEWVPELKEY--APNVPFLLIGTQID  133 (194)
T ss_dssp             EEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--STTCCEEEEEECTT
T ss_pred             EEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChh
Confidence            789999999999999999999999999999999998          67777776 455555432  23789999999999


Q ss_pred             ccccc-------------ccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         250 LFQEK-------------ITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       250 l~~~k-------------~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      +..+.             +...+... +.   ...++ .+++|||++|.||.++|++|.+.++
T Consensus       134 l~~~~~~~~~~~~~~~~~v~~~~~~~-~~---~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          134 LRDDPKTLARLNDMKEKPICVEQGQK-LA---KEIGACCYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             STTCHHHHHHHTTTTCCCCCHHHHHH-HH---HHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hcccccchhhcccccCcccCHHHHHH-HH---HHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            87532             11111111 11   11233 6899999999999999999998875

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.87  E-value=8.6e-23  Score=183.56  Aligned_cols=129  Identities=17%  Similarity=0.177  Sum_probs=92.0

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccc---cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERK---KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN  232 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~---~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~  232 (313)
                      .||+|+....+. ..+++++||||||++++.   .|..||++++++|||+|+++          .  +.++..++..++.
T Consensus        32 ~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd----------~--~~~~~~~l~~~l~   98 (331)
T 3r7w_B           32 ESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQD----------E--YINAITNLAMIIE   98 (331)
T ss_dssp             CCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSS----------C--TTHHHHHHHHHHH
T ss_pred             cCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCc----------h--HHHHHHHHHHHHH
Confidence            577887766553 458999999999999975   46899999999999999997          3  5555655554432


Q ss_pred             C--CCCCCCcEEEEeecCCccccc-------ccCCcccccCcCCC-CCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         233 S--KWFMDTSIILFLNKNDLFQEK-------ITKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       233 ~--~~~~~~piilv~NK~Dl~~~k-------~~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      .  ....++|++|++||+|+..+.       ....+..+.+.+.. ...++.+++|||++ .||.++|..|.+.++
T Consensus        99 ~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li  173 (331)
T 3r7w_B           99 YAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLI  173 (331)
T ss_dssp             HHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSS
T ss_pred             HHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHH
Confidence            1  123579999999999986531       11112222333221 12578999999998 599999999987765

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.87  E-value=7.5e-22  Score=168.12  Aligned_cols=122  Identities=13%  Similarity=0.109  Sum_probs=85.0

Q ss_pred             EEec---CceeeeEecCCCccccc-cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC--CCCCC
Q psy8318         166 FTFK---DLHFKMFDVGGQRSERK-KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK--WFMDT  239 (313)
Q Consensus       166 ~~~~---~~~~~i~D~~Gq~~~r~-~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~--~~~~~  239 (313)
                      +.++   ++.+++|||+|++.++. .|..|+++++++|||+|++++         ...+.+...++..++...  ...++
T Consensus        46 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  116 (214)
T 2fh5_B           46 YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAF---------QREVKDVAEFLYQVLIDSMALKNSP  116 (214)
T ss_dssp             EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTH---------HHHHHHHHHHHHHHHHHHHTSTTCC
T ss_pred             EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCc---------CHHHHHHHHHHHHHHhhhhhcccCC
Confidence            4454   68899999999999998 899999999999999999872         234666666666665431  23468


Q ss_pred             cEEEEeecCCccccccc----------------------------------CCcccccCcCCCCCCCeEEEEeecccC--
Q psy8318         240 SIILFLNKNDLFQEKIT----------------------------------KSPLTVCFPEYTDQKEIYTHFTCATDT--  283 (313)
Q Consensus       240 piilv~NK~Dl~~~k~~----------------------------------~~~l~~~f~~~~~~~~~~~~~tSA~~~--  283 (313)
                      |++||+||+|+..+.-.                                  .....+.|..-.....+.+++|||++|  
T Consensus       117 piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~  196 (214)
T 2fh5_B          117 SLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRG  196 (214)
T ss_dssp             EEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC----
T ss_pred             CEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCc
Confidence            99999999998754210                                  000011111000012678999999999  


Q ss_pred             ----cCHHHHHHHHHHH
Q psy8318         284 ----SNIQFVFDAVTDV  296 (313)
Q Consensus       284 ----~~v~~~f~~i~~~  296 (313)
                          .||+++|+||.+.
T Consensus       197 ~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          197 DTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ---CCBCHHHHHHHHHH
T ss_pred             cccccChHHHHHHHHHh
Confidence                9999999999875

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.87  E-value=8.6e-22  Score=162.58  Aligned_cols=115  Identities=14%  Similarity=0.108  Sum_probs=83.2

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH--hCCCCCCCcEEEEeec
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC--NSKWFMDTSIILFLNK  247 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~--~~~~~~~~piilv~NK  247 (313)
                      .+.+++||++|++.     ..|+++++++|+|+|+++          ..++.+...|++.+.  ......++|++||+||
T Consensus        53 ~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK  117 (178)
T 2iwr_A           53 THLVLIREEAGAPD-----AKFSGWADAVIFVFSLED----------ENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ  117 (178)
T ss_dssp             EEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEEC
T ss_pred             EEEEEEEECCCCch-----hHHHHhCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence            36789999999976     467899999999999998          677777766543332  2223357899999999


Q ss_pred             CCccc--c-cccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318         248 NDLFQ--E-KITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANL  302 (313)
Q Consensus       248 ~Dl~~--~-k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~  302 (313)
                      +|+..  . .+...+..+....+   .++.+++|||++|.||.++|+++.+.+.....
T Consensus       118 ~Dl~~~~~~~v~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  172 (178)
T 2iwr_A          118 DRISASSPRVVGDARARALXADM---KRCSYYETXATYGLNVDRVFQEVAQKVVTLRK  172 (178)
T ss_dssp             TTCBTTBCCCSCHHHHHHHHHHH---SSEEEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCcCCHHHHHHHHHhh---cCCeEEEEeccccCCHHHHHHHHHHHHHHHHh
Confidence            99842  1 11112222221211   35789999999999999999999999876543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.87  E-value=2.5e-22  Score=165.39  Aligned_cols=120  Identities=18%  Similarity=0.202  Sum_probs=90.6

Q ss_pred             EEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318         164 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI  241 (313)
Q Consensus       164 ~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi  241 (313)
                      ..+.+.+  ..+.+||++|++.++..|..++.+++++|+|+|+++          ..++.+...++..+... ...+.|+
T Consensus        54 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~pi  122 (179)
T 2y8e_A           54 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN----------TNSFHQTSKWIDDVRTE-RGSDVII  122 (179)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-HTTSSEE
T ss_pred             EEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCcE
Confidence            3344444  689999999999999999999999999999999998          66777777777766542 2256899


Q ss_pred             EEEeecCCccccccc-CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         242 ILFLNKNDLFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       242 ilv~NK~Dl~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      ++|+||+|+..++.. ........    ...++.++++||++|.|+.++|++|.+.+.
T Consensus       123 ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  176 (179)
T 2y8e_A          123 MLVGNKTDLSDKRQVSTEEGERKA----KELNVMFIETSAKAGYNVKQLFRRVAAALP  176 (179)
T ss_dssp             EEEEECGGGGGGCCSCHHHHHHHH----HHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred             EEEEECCcccccCcCCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            999999998754221 11211111    123568999999999999999999987653

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.87  E-value=3.2e-23  Score=174.86  Aligned_cols=123  Identities=18%  Similarity=0.196  Sum_probs=85.7

Q ss_pred             eEEEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCC
Q psy8318         162 IETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDT  239 (313)
Q Consensus       162 ~~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~  239 (313)
                      ....+.+++  +.+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...|+..+.. ....+.
T Consensus        71 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~-~~~~~~  139 (199)
T 3l0i_B           71 KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD----------QESFNNVKQWLQEIDR-YASENV  139 (199)
T ss_dssp             EEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCC----------SHHHHHHHHHHHHHHS-CC-CCS
T ss_pred             EEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHH-hccCCC
Confidence            334445544  689999999999999999999999999999999998          6788888787777643 334579


Q ss_pred             cEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         240 SIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       240 piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      |++||+||+|+..++.........+.   ...++.++++||++|.||.++|++|.+.+.
T Consensus       140 p~ilv~nK~Dl~~~~~v~~~~~~~~~---~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~  195 (199)
T 3l0i_B          140 NKLLVGNKCDLTTKKVVDYTTAKEFA---DSLGIPFLETSAKNATNVEQSFMTMAAEIK  195 (199)
T ss_dssp             EEEEC-CCSSCC--CCCCSCC-CHHH---HTTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred             CEEEEEECccCCccccCCHHHHHHHH---HHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            99999999998754332222222222   224567899999999999999999987664

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.87  E-value=4.5e-22  Score=165.57  Aligned_cols=115  Identities=13%  Similarity=0.147  Sum_probs=85.2

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .+.+.+||++|++.++..|..++++++++|+|+|+++          ..++.+.. .|+..+...  ..++|++||+||+
T Consensus        54 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~  121 (184)
T 1m7b_A           54 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR----------PETLDSVLKKWKGEIQEF--CPNTKMLLVGCKS  121 (184)
T ss_dssp             EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTCEEEEEEECG
T ss_pred             EEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcc
Confidence            4789999999999999999999999999999999998          67777763 444444322  2478999999999


Q ss_pred             Cccccc-------------ccCCcccccCcCCCCCCCeEEEEeecc-cCcCHHHHHHHHHHHHHH
Q psy8318         249 DLFQEK-------------ITKSPLTVCFPEYTDQKEIYTHFTCAT-DTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       249 Dl~~~k-------------~~~~~l~~~f~~~~~~~~~~~~~tSA~-~~~~v~~~f~~i~~~i~~  299 (313)
                      |+..+.             +...+.......+   ..+.+++|||+ ++.||.++|+++.+.++.
T Consensus       122 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          122 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQI---GAATYIECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             GGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH---TCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             hhhcchhhHhhhhhcccCCCCHHHHHHHHHHc---CCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence            987521             1111111111111   12578999998 689999999999988763

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.87  E-value=5.8e-22  Score=168.35  Aligned_cols=123  Identities=15%  Similarity=0.202  Sum_probs=92.8

Q ss_pred             EEEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc
Q psy8318         163 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS  240 (313)
Q Consensus       163 ~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p  240 (313)
                      ...+.+++  +.+.+||++|++.++..|..++.+++++|+|+|+++          ..++.+...++..+... ...+.|
T Consensus        59 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p  127 (213)
T 3cph_A           59 IKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTD----------ERTFTNIKQWFKTVNEH-ANDEAQ  127 (213)
T ss_dssp             EEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-TTTCSE
T ss_pred             EEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCC
Confidence            34455555  789999999999999999999999999999999998          56666666676666542 224689


Q ss_pred             EEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         241 IILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       241 iilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ++||+||+|+...............    ..++.++++||++|.||.++|++|.+.+.++
T Consensus       128 iilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  183 (213)
T 3cph_A          128 LLLVGNKSDMETRVVTADQGEALAK----ELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  183 (213)
T ss_dssp             EEEEEECTTCSSCCSCHHHHHHHHH----HHTCCEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCcccccCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999998433222222222111    1345789999999999999999999988765

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.87  E-value=3.4e-22  Score=170.01  Aligned_cols=115  Identities=17%  Similarity=0.185  Sum_probs=85.8

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .+.+.+||++|++.++.+|..++++++++|+|+|+++          ..++.+.. .|+..+...  ..+.|++||+||+
T Consensus        56 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~  123 (212)
T 2j0v_A           56 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS----------KASYENVLKKWMPELRRF--APNVPIVLVGTKL  123 (212)
T ss_dssp             EEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTCCEEEEEECH
T ss_pred             EEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCH
Confidence            3689999999999999999999999999999999998          67777776 455555332  2378999999999


Q ss_pred             Ccccccc---------cCCcccccCcCCCCCCC-eEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         249 DLFQEKI---------TKSPLTVCFPEYTDQKE-IYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       249 Dl~~~k~---------~~~~l~~~f~~~~~~~~-~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |+..+..         ...+......    ..+ ..+++|||++|.||.++|++|.+.+.+.
T Consensus       124 Dl~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  181 (212)
T 2j0v_A          124 DLRDDKGYLADHTNVITSTQGEELRK----QIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP  181 (212)
T ss_dssp             HHHTCHHHHHTCSSCCCHHHHHHHHH----HHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred             HhhhCccccccccCCCCHHHHHHHHH----HcCCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence            9875421         1111111111    123 3789999999999999999999988754

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.87  E-value=2.5e-22  Score=172.13  Aligned_cols=115  Identities=16%  Similarity=0.145  Sum_probs=92.3

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      +++.+.+|||+|++.++..|..++++++++|+|+|+++          ..++.+...|+..+...  ..++|++||+||+
T Consensus        62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~  129 (221)
T 3gj0_A           62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS----------RVTYKNVPNWHRDLVRV--CENIPIVLCGNKV  129 (221)
T ss_dssp             EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHH--STTCCEEEEEECT
T ss_pred             EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh--CCCCCEEEEEECC
Confidence            45789999999999999999999999999999999998          67777777777777553  2478999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |+..+.... .... +.   ...++.+++|||++|.||.++|++|.+.+...
T Consensus       130 Dl~~~~~~~-~~~~-~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~  176 (221)
T 3gj0_A          130 DIKDRKVKA-KSIV-FH---RKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  176 (221)
T ss_dssp             TSSSCSSCG-GGCC-HH---HHHTCEEEECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred             ccccccccH-HHHH-HH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            987643322 1111 11   22457899999999999999999999988754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.86  E-value=2.9e-22  Score=168.91  Aligned_cols=115  Identities=16%  Similarity=0.117  Sum_probs=85.0

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      ...+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...|+..+... ...+.|++||+||+|
T Consensus        76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~D  144 (199)
T 2p5s_A           76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTC----------EKSFLNIREWVDMIEDA-AHETVPIMLVGNKAD  144 (199)
T ss_dssp             EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-C---CCEEEEEECGG
T ss_pred             EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCC----------hHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcc
Confidence            3679999999999999999999999999999999998          56666666666655332 224689999999999


Q ss_pred             cccccc------cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         250 LFQEKI------TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       250 l~~~k~------~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      +.....      ........+.   ...++.++++||++|.||.++|.+|.+.+.
T Consensus       145 l~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~SA~~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          145 IRDTAATEGQKCVPGHFGEKLA---MTYGALFCETSAKDGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             GHHHHHHTTCCCCCHHHHHHHH---HHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             cccccccccccccCHHHHHHHH---HHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            864210      0111111111   123568899999999999999999998775

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.86  E-value=4.2e-22  Score=164.78  Aligned_cols=114  Identities=17%  Similarity=0.167  Sum_probs=82.3

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeec
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNK  247 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK  247 (313)
                      ..+.+++||++|++.++..|..++++++++++|+|+++          ..++++.. .|+..+...  ..+.|+++|+||
T Consensus        54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK  121 (182)
T 3bwd_D           54 ATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVSKKWIPELKHY--APGVPIVLVGTK  121 (182)
T ss_dssp             ----CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTCCEEEEEEC
T ss_pred             EEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEec
Confidence            34678899999999999999999999999999999998          67777766 355544332  237899999999


Q ss_pred             CCccccccc-----------CCcccccCcCCCCCCC-eEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         248 NDLFQEKIT-----------KSPLTVCFPEYTDQKE-IYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       248 ~Dl~~~k~~-----------~~~l~~~f~~~~~~~~-~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      +|+..+...           ..+... +.   ...+ ..+++|||++|.||.++|+++.+.++
T Consensus       122 ~Dl~~~~~~~~~~~~~~~v~~~~~~~-~~---~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          122 LDLRDDKQFFIDHPGAVPITTVQGEE-LK---KLIGAPAYIECSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             HHHHTCHHHHHHC--CCCCCHHHHHH-HH---HHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             hhhhcCcccccccccCCCCCHHHHHH-HH---HHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            998654221           111111 11   1123 37899999999999999999998764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.86  E-value=1e-21  Score=167.67  Aligned_cols=116  Identities=15%  Similarity=0.222  Sum_probs=73.1

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .+.+.+|||+|++.++..|..++++++++|+|+|+++          ..++.+.. .|+..+...  ..++|++||+||+
T Consensus        81 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~  148 (214)
T 2j1l_A           81 PVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTS----------PNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKT  148 (214)
T ss_dssp             EEEEEEEEC---------------CEEEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CSSCCEEEEEECG
T ss_pred             EEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEECh
Confidence            3689999999999999999999999999999999998          67777776 455554332  2468999999999


Q ss_pred             Cccccccc-------------CCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         249 DLFQEKIT-------------KSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       249 Dl~~~k~~-------------~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      |+..+...             ..+... +.   ...++ .+++|||++|.||.++|++|.+.+++..
T Consensus       149 Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~---~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          149 DLRKDKSLVNKLRRNGLEPVTYHRGQE-MA---RSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             GGGSCHHHHHHHHHTTCCCCCHHHHHH-HH---HHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred             hhhccchhhhhhcccccCcccHHHHHH-HH---HhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence            98764210             011111 11   11244 7899999999999999999999987654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.86  E-value=5e-22  Score=168.38  Aligned_cols=113  Identities=17%  Similarity=0.195  Sum_probs=83.8

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .+.+.+||++|++.++..|..++++++++|+|+|+++          ..++.+.. .|+..+... . .+.|++||+||+
T Consensus        77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~  144 (204)
T 4gzl_A           77 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVS----------PASFENVRAKWYPEVRHH-C-PNTPIILVGTKL  144 (204)
T ss_dssp             EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH-C-SSCCEEEEEECH
T ss_pred             EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh-C-CCCCEEEEEech
Confidence            3567799999999999999999999999999999998          77777776 455444332 2 578999999999


Q ss_pred             Cccccccc-------------CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         249 DLFQEKIT-------------KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       249 Dl~~~k~~-------------~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      |+..+...             ..+.......+   ....++++||++|.||.++|++|.+.+
T Consensus       145 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI---GAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             HHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT---TCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             hhccchhhhhhhhccccccccHHHHHHHHHhc---CCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            98754211             00111111111   123589999999999999999998754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.86  E-value=6.4e-22  Score=160.49  Aligned_cols=115  Identities=15%  Similarity=0.092  Sum_probs=89.6

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+.+||++|++.++..|..++..++++++|+|+++          ..++.+...++..+.......+.|+++++||+|
T Consensus        50 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~D  119 (166)
T 2ce2_X           50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN----------TKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD  119 (166)
T ss_dssp             EEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTT
T ss_pred             EEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchh
Confidence            3678999999999999999999999999999999998          677777777777765543335789999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      +...........+..    ...++.++++||++|.|+.++|+++.+.+.
T Consensus       120 l~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          120 LAARTVESRQAQDLA----RSYGIPYIETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             CSCCCSCHHHHHHHH----HHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhcccCHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence            876322222222211    113467899999999999999999998875

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.86  E-value=5.1e-22  Score=169.64  Aligned_cols=116  Identities=13%  Similarity=0.128  Sum_probs=87.5

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+.+|||+|++.++..|..++.+++++|+|+|+++          ..++.+...|+..+... ...+.|++||+||+|+
T Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl  129 (218)
T 4djt_A           61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTS----------RITCQNLARWVKEFQAV-VGNEAPIVVCANKIDI  129 (218)
T ss_dssp             EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-HCSSSCEEEEEECTTC
T ss_pred             EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCC
Confidence            679999999999999999999999999999999998          56666665555555432 2245899999999998


Q ss_pred             ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      .............+.   ...++.++++||++|.||.++|++|.+.+...
T Consensus       130 ~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~  176 (218)
T 4djt_A          130 KNRQKISKKLVMEVL---KGKNYEYFEISAKTAHNFGLPFLHLARIFTGR  176 (218)
T ss_dssp             C----CCHHHHHHHT---TTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCC
T ss_pred             ccccccCHHHHHHHH---HHcCCcEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence            764222212122222   33567899999999999999999999988754

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.86  E-value=2e-21  Score=161.08  Aligned_cols=114  Identities=17%  Similarity=0.197  Sum_probs=85.8

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .+.+++||++|++.++..|..++++++++|+|+|+++          ..++.+.. .|+..+...  ..+.|+++|+||+
T Consensus        52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~  119 (186)
T 1mh1_A           52 PVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVS----------PASFENVRAKWYPEVRHH--CPNTPIILVGTKL  119 (186)
T ss_dssp             EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--STTSCEEEEEECH
T ss_pred             EEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHHHh--CCCCCEEEEeEcc
Confidence            4678899999999999999999999999999999998          67777776 455555432  2378999999999


Q ss_pred             Cccccccc-------------CCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         249 DLFQEKIT-------------KSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       249 Dl~~~k~~-------------~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      |+......             ..+.. .+.   ...+. .++++||++|.|+.++|+++.+.+..
T Consensus       120 Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~---~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          120 DLRDDKDTIEKLKEKKLTPITYPQGL-AMA---KEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             HHHTCHHHHHHHHHTTCCCCCHHHHH-HHH---HHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             cccccchhhhhhcccccccCCHHHHH-HHH---HhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence            98653210             00111 111   11233 78999999999999999999988754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.86  E-value=4e-21  Score=161.36  Aligned_cols=117  Identities=15%  Similarity=0.127  Sum_probs=85.7

Q ss_pred             ceeeeEecCCCcc-ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         171 LHFKMFDVGGQRS-ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       171 ~~~~i~D~~Gq~~-~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      +.+.+||++|+.. ++.++..|++.++++|+|+|+++          ..++.....|+..+.......++|++|++||+|
T Consensus        56 ~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~----------~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~D  125 (192)
T 2cjw_A           56 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITD----------RASFEKASELRIQLRRARQTEDIPIILVGNKSD  125 (192)
T ss_dssp             EEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTT
T ss_pred             EEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhCCCCCeEEEEEechh
Confidence            5678999999887 67788889999999999999998          788888777777665432335789999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +...+.........+.   ...++.+++|||++|.||.++|+++.+.+...
T Consensus       126 l~~~r~v~~~~~~~~a---~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~  173 (192)
T 2cjw_A          126 LVRXREVSVSEGRAXA---VVFDXKFIETSAAVQHNVKELFEGIVRQVRLR  173 (192)
T ss_dssp             CGGGCCSCHHHHHHHH---HHTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             hhccccccHHHHHHHH---HHhCCceEEeccccCCCHHHHHHHHHHHHHhh
Confidence            8653221111111121   11346789999999999999999999988644

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=5.6e-22  Score=162.09  Aligned_cols=116  Identities=15%  Similarity=0.110  Sum_probs=85.8

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC-CCCCCCcEEEEeecC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS-KWFMDTSIILFLNKN  248 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~-~~~~~~piilv~NK~  248 (313)
                      ...+.+||++|++.++..|..++.+++++|+|+|+++          ..++++...++..+... ....+.|+++|+||+
T Consensus        50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~  119 (172)
T 2erx_A           50 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITS----------RQSLEELKPIYEQICEIKGDVESIPIMLVGNKC  119 (172)
T ss_dssp             EEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTC----------HHHHHTTHHHHHHHHHHHC---CCCEEEEEECG
T ss_pred             EEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcc
Confidence            3679999999999999999999999999999999998          66666666666655432 223578999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      |+..++.........+.   ...++.++++||++|.|+.++|++|.+.+.
T Consensus       120 Dl~~~~~v~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  166 (172)
T 2erx_A          120 DESPSREVQSSEAEALA---RTWKCAFMETSAKLNHNVKELFQELLNLEK  166 (172)
T ss_dssp             GGGGGCCSCHHHHHHHH---HHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred             ccccccccCHHHHHHHH---HHhCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence            98654221111111111   123567899999999999999999987653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.86  E-value=2e-21  Score=164.17  Aligned_cols=113  Identities=16%  Similarity=0.213  Sum_probs=84.2

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHH-HHHHHHhCCCCCCCcEEEEeecC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMK-LFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~-~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .+.+.+||++|++.++..|..++++++++|+|+|+++          ..++.+... |...+..  ...+.|+++|+||+
T Consensus        72 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~  139 (201)
T 2gco_A           72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKH--FCPNVPIILVGNKK  139 (201)
T ss_dssp             EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHH--HSTTCCEEEEEECG
T ss_pred             EEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHH--hCCCCCEEEEEecH
Confidence            3689999999999999999999999999999999998          677777643 4443322  12478999999999


Q ss_pred             CcccccccCC-------------cccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         249 DLFQEKITKS-------------PLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       249 Dl~~~k~~~~-------------~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      |+..+.....             +.....    ...+. .++++||++|.||.++|++|.+.++
T Consensus       140 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          140 DLRQDEHTRRELAKMKQEPVRSEEGRDMA----NRISAFGYLECSAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             GGTTCHHHHHHHHTTTCCCCCHHHHHHHH----HHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HhhcCccchhhhcccccCcCCHHHHHHHH----HhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            9875421110             111111    11233 7899999999999999999998775

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=4.7e-21  Score=162.55  Aligned_cols=118  Identities=15%  Similarity=0.254  Sum_probs=85.3

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      +.+.+|||+|++.++..|..++++++++|+|+|+++          ..++.+.. .|+..+..  ...+.|+++|+||+|
T Consensus        73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~D  140 (207)
T 2fv8_A           73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDS----------PDSLENIPEKWVPEVKH--FCPNVPIILVANKKD  140 (207)
T ss_dssp             EEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTC----------HHHHHHHHHTHHHHHHH--HSTTCCEEEEEECGG
T ss_pred             EEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHH--hCCCCCEEEEEEchh
Confidence            689999999999999999999999999999999998          66777763 34444432  124789999999999


Q ss_pred             cccccccCCccccc----C-----cCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         250 LFQEKITKSPLTVC----F-----PEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       250 l~~~k~~~~~l~~~----f-----~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +..+......+...    .     ..+....+. .++++||++|.||.++|++|.+.+++.
T Consensus       141 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          141 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             GGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred             hhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence            87542111100000    0     000011233 789999999999999999999988754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.85  E-value=4.7e-22  Score=165.66  Aligned_cols=116  Identities=18%  Similarity=0.182  Sum_probs=84.5

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCccccccccccc-ccHHHHHHHHHHHHhCCCCCCCcEEEEeec
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEM-NRMIESMKLFDSICNSKWFMDTSIILFLNK  247 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~-~~l~e~~~~~~~~~~~~~~~~~piilv~NK  247 (313)
                      +.+.+.+||++|++.++.+|..|+++++++++|+|+++          . .++.....|+..+...  ..++|++||+||
T Consensus        54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~s~~~~~~~~~~~~~~--~~~~piilv~nK  121 (184)
T 2zej_A           54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSK----------GQAEVDAMKPWLFNIKAR--ASSSPVILVGTH  121 (184)
T ss_dssp             --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGG----------CHHHHHTHHHHHHHHHHH--CTTCEEEEEEEC
T ss_pred             CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCc----------chhHHHHHHHHHHHHHhh--CCCCcEEEEEEC
Confidence            46789999999999999999999999999999999997          3 3456666666665432  146899999999


Q ss_pred             CCcccccccC---CcccccCcCCCCCCCe----EEEEeecccCc-CHHHHHHHHHHHHHH
Q psy8318         248 NDLFQEKITK---SPLTVCFPEYTDQKEI----YTHFTCATDTS-NIQFVFDAVTDVIIK  299 (313)
Q Consensus       248 ~Dl~~~k~~~---~~l~~~f~~~~~~~~~----~~~~tSA~~~~-~v~~~f~~i~~~i~~  299 (313)
                      +|+..+....   ......+.   ...++    .++++||+++. ++.++++.|.+.+.+
T Consensus       122 ~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          122 LDVSDEKQRKACMSKITKELL---NKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN  178 (184)
T ss_dssp             GGGCCHHHHHHHHHHHHHHTT---TCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred             CCcccchhhHHHHHHHHHHHH---HhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence            9987543211   11112222   11233    38999999996 999999998887754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.85  E-value=6.7e-21  Score=156.92  Aligned_cols=122  Identities=13%  Similarity=0.134  Sum_probs=88.6

Q ss_pred             EEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEE
Q psy8318         164 THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIIL  243 (313)
Q Consensus       164 ~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piil  243 (313)
                      ..+.+++..+.+|||+|++.++..|..++..++++|+|+|+++           ....++...+..+..    .+.|+++
T Consensus        48 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-----------~~~~~~~~~l~~~~~----~~~p~il  112 (178)
T 2lkc_A           48 YQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADD-----------GVMPQTVEAINHAKA----ANVPIIV  112 (178)
T ss_dssp             CEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTC-----------CCCHHHHHHHHHHGG----GSCCEEE
T ss_pred             EEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHh----CCCCEEE
Confidence            3456677889999999999999999999999999999999886           233445555554432    3689999


Q ss_pred             EeecCCcccccccCCcccccC---cCCCCC--CCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318         244 FLNKNDLFQEKITKSPLTVCF---PEYTDQ--KEIYTHFTCATDTSNIQFVFDAVTDVIIKANL  302 (313)
Q Consensus       244 v~NK~Dl~~~k~~~~~l~~~f---~~~~~~--~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~  302 (313)
                      |+||+|+....  ...+...+   ..+...  ..+.+++|||++|.||.++|++|.+.+....+
T Consensus       113 v~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          113 AINKMDKPEAN--PDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             EEETTTSSCSC--HHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred             EEECccCCcCC--HHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhcc
Confidence            99999987531  01111111   111111  23689999999999999999999998876544

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=7e-22  Score=165.93  Aligned_cols=117  Identities=14%  Similarity=0.090  Sum_probs=87.7

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC-CCCCCCcEEEEeecC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS-KWFMDTSIILFLNKN  248 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~-~~~~~~piilv~NK~  248 (313)
                      .+.+.+|||+|++.++..|..++.+++++|+|+|+++          ..++.+...++..+... ....+.|++||+||+
T Consensus        55 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~  124 (199)
T 2gf0_A           55 VCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTS----------KQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKC  124 (199)
T ss_dssp             EEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTC----------HHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECT
T ss_pred             EEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            4689999999999999999999999999999999998          56666665555544332 113468999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |+..+...........    ...++.++++||++|.||.++|++|.+.+..+
T Consensus       125 Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  172 (199)
T 2gf0_A          125 DETQREVDTREAQAVA----QEWKCAFMETSAKMNYNVKELFQELLTLETRR  172 (199)
T ss_dssp             TCSSCSSCHHHHHHHH----HHHTCEEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred             cCCccccCHHHHHHHH----HHhCCeEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence            9875322222221111    12356789999999999999999999877544

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.84  E-value=3.3e-21  Score=162.10  Aligned_cols=118  Identities=15%  Similarity=0.170  Sum_probs=82.6

Q ss_pred             cCceeeeEecCCCcccccc-c--cccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEe
Q psy8318         169 KDLHFKMFDVGGQRSERKK-W--IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFL  245 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~-w--~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~  245 (313)
                      +.+.+++||++|++.++.. |  ..+|++++++|+|+|+++-        ....+.....++..+..  ...++|++||+
T Consensus        67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--------~~~~~~~~~~~l~~~~~--~~~~~piilv~  136 (196)
T 3llu_A           67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDD--------YMEALTRLHITVSKAYK--VNPDMNFEVFI  136 (196)
T ss_dssp             TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSC--------CHHHHHHHHHHHHHHHH--HCTTCEEEEEE
T ss_pred             CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCc--------hHHHHHHHHHHHHHHHh--cCCCCcEEEEE
Confidence            4589999999999997655 5  7999999999999999970        01444555555555432  23478999999


Q ss_pred             ecCCccccc-------ccCCcccccCcC-CCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         246 NKNDLFQEK-------ITKSPLTVCFPE-YTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       246 NK~Dl~~~k-------~~~~~l~~~f~~-~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ||+|+..+.       .......+.+.. +....++.+++|||++ .||.++|.++.+.+
T Consensus       137 nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          137 HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             eccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence            999975421       111111111211 1024578899999999 99999999998865

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.72  E-value=3.9e-22  Score=168.72  Aligned_cols=117  Identities=18%  Similarity=0.193  Sum_probs=84.1

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeec
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNK  247 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK  247 (313)
                      ..+.+++||++|++.++..|..++++++++|+|+|+++          ..++.+.. .|+..+.. . ..+.|++||+||
T Consensus        76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~~l~~-~-~~~~piilv~NK  143 (204)
T 3th5_A           76 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS----------PASFENVRAKWYPEVRH-H-CPNTPIILVGTK  143 (204)
Confidence            34678899999999999999999999999999999998          66676665 44444422 1 237899999999


Q ss_pred             CCcccccccCCcc---------cccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHH
Q psy8318         248 NDLFQEKITKSPL---------TVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       248 ~Dl~~~k~~~~~l---------~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +|+..+......+         ......+....++ .+++|||++|.||.++|++|.+.+
T Consensus       144 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          144 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            9987542111000         0001111122344 688999999999999999998765

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.81  E-value=1.9e-19  Score=151.71  Aligned_cols=123  Identities=15%  Similarity=0.214  Sum_probs=90.2

Q ss_pred             EEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318         164 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI  241 (313)
Q Consensus       164 ~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi  241 (313)
                      ..+.+.+  +.+.+||++|++.++..|..++++++++++|+|+++          ..++.+...|+..+... ...+.|+
T Consensus        45 ~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~~i  113 (199)
T 2f9l_A           45 RSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAK----------HLTYENVERWLKELRDH-ADSNIVI  113 (199)
T ss_dssp             EEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEE
T ss_pred             EEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCCeE
Confidence            3455544  678899999999999999999999999999999998          55666666666555332 2246899


Q ss_pred             EEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         242 ILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       242 ilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ++++||+|+...+.........+.   ...++.++.|||+++.|+.++|++|.+.+.+.
T Consensus       114 ~~v~nK~Dl~~~~~~~~~~a~~l~---~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~  169 (199)
T 2f9l_A          114 MLVGNKSDLRHLRAVPTDEARAFA---EKNNLSFIETSALDSTNVEEAFKNILTEIYRI  169 (199)
T ss_dssp             EEEEECTTCGGGCCSCHHHHHHHH---HHTTCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEEEECcccccccCcCHHHHHHHH---HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            999999998653211111111121   12356788899999999999999999988764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.81  E-value=1.1e-19  Score=148.61  Aligned_cols=113  Identities=17%  Similarity=0.141  Sum_probs=79.1

Q ss_pred             EEEEecCceeeeEecCCCccccc------ccccccc--CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         164 THFTFKDLHFKMFDVGGQRSERK------KWIHCFE--GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       164 ~~~~~~~~~~~i~D~~Gq~~~r~------~w~~~~~--~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      ..+.+++..+++|||+|++.++.      ++..|+.  +++++++|+|.++          ..+.   ..++..+..   
T Consensus        43 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~----------~~~~---~~~~~~~~~---  106 (165)
T 2wji_A           43 GEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA----------LERN---LYLTLQLME---  106 (165)
T ss_dssp             EEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTC----------HHHH---HHHHHHHHH---
T ss_pred             EEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCc----------hhHh---HHHHHHHHh---
Confidence            34556678899999999988763      3466775  8999999999987          2222   334444433   


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                       .+.|+++|+||+|+..++....+. +.+.   ...++.+++|||++|.||.++|+++.+.+
T Consensus       107 -~~~p~ilv~nK~Dl~~~~~~~~~~-~~~~---~~~~~~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          107 -MGANLLLALNKMDLAKSLGIEIDV-DKLE---KILGVKVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             -TTCCEEEEEECHHHHHHTTCCCCH-HHHH---HHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             -cCCCEEEEEEchHhccccChhhHH-HHHH---HHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence             268999999999986542211121 1121   11246789999999999999999998765

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.80  E-value=1.9e-19  Score=145.61  Aligned_cols=113  Identities=15%  Similarity=0.118  Sum_probs=79.6

Q ss_pred             eEEEEEecCceeeeEecCCCcc-------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         162 IETHFTFKDLHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       162 ~~~~~~~~~~~~~i~D~~Gq~~-------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      ....+...+..+.+||++|+..       .+..|..+++.++++|+|+|.++          ..+  +...++..++.. 
T Consensus        40 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~--~~~~~~~~~~~~-  106 (161)
T 2dyk_A           40 KEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRA----------ELT--QADYEVAEYLRR-  106 (161)
T ss_dssp             EEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSS----------CCC--HHHHHHHHHHHH-
T ss_pred             eEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCC----------ccc--HhHHHHHHHHHh-
Confidence            3344556677899999999987       45677788999999999999997          111  122233333332 


Q ss_pred             CCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHH
Q psy8318         235 WFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                        .+.|+++|+||+|+..+.   ....+.. .+    ++ .++++||++|.|+.++|+++.+.+
T Consensus       107 --~~~p~ilv~nK~Dl~~~~---~~~~~~~-~~----~~~~~~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          107 --KGKPVILVATKVDDPKHE---LYLGPLY-GL----GFGDPIPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             --HTCCEEEEEECCCSGGGG---GGCGGGG-GG----SSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred             --cCCCEEEEEECcccccch---HhHHHHH-hC----CCCCeEEEecccCCChHHHHHHHHHhC
Confidence              368999999999987642   1222211 22    33 578999999999999999998753

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.80  E-value=1.9e-19  Score=155.03  Aligned_cols=130  Identities=17%  Similarity=0.169  Sum_probs=85.5

Q ss_pred             ceeEEEEEecCceeeeEecCCCcc----cc-----ccccccccCCcEEEEEEecCCccccccccccccc--HHHHHHHHH
Q psy8318         160 GIIETHFTFKDLHFKMFDVGGQRS----ER-----KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNR--MIESMKLFD  228 (313)
Q Consensus       160 g~~~~~~~~~~~~~~i~D~~Gq~~----~r-----~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~--l~e~~~~~~  228 (313)
                      .+....+..++..+.+|||+|+..    .+     ..+..++..++++|||+|+++          ..+  ......++.
T Consensus        65 ~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~  134 (228)
T 2qu8_A           65 NLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISE----------QCGLTIKEQINLFY  134 (228)
T ss_dssp             CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTC----------TTSSCHHHHHHHHH
T ss_pred             eeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEeccc----------ccCcchHHHHHHHH
Confidence            444445566778999999999932    11     223456788999999999997          333  244456666


Q ss_pred             HHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCC--eEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         229 SICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKE--IYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       229 ~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~--~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      .+...  ..+.|+++|+||+|+.............+..+....+  +.+++|||++|.||.++|++|.+.+.+..
T Consensus       135 ~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          135 SIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             HHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence            66432  3478999999999987542211111111111101122  78999999999999999999999887553

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.80  E-value=2.7e-19  Score=162.08  Aligned_cols=113  Identities=16%  Similarity=0.196  Sum_probs=84.2

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHH-HHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESM-KLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~-~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      +.+.+||++|++.++..|..++++++++|+|+|+++          ..++.+.. .|+..+...  ..++|+++|+||+|
T Consensus       203 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D  270 (332)
T 2wkq_A          203 VNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVS----------PASFHHVRAKWYPEVRHH--CPNTPIILVGTKLD  270 (332)
T ss_dssp             EEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTSCEEEEEECHH
T ss_pred             EEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhh--CCCCcEEEEEEchh
Confidence            567799999999999999999999999999999998          67777766 344444332  13789999999999


Q ss_pred             cccccc-------------cCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         250 LFQEKI-------------TKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       250 l~~~k~-------------~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      +.....             ...+... +.   ...++ .+++|||++|.||.++|++|.+.++.
T Consensus       271 l~~~~~~~~~~~~~~~~~v~~~~~~~-~~---~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          271 LRDDKDTIEKLKEKKLTPITYPQGLA-MA---KEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             HHTCHHHHHHHHHTTCCCCCHHHHHH-HH---HHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             cccccchhhhccccccccccHHHHHH-HH---HHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence            865311             0001111 11   11233 78999999999999999999988753

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.79  E-value=9.6e-20  Score=164.16  Aligned_cols=129  Identities=19%  Similarity=0.288  Sum_probs=93.1

Q ss_pred             eeecceeEEEEEe-cCceeeeEecCCCccc-----cccccccccCCcEEEEEEecCCcccccccccccccHHHHHHH---
Q psy8318         156 VKTTGIIETHFTF-KDLHFKMFDVGGQRSE-----RKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKL---  226 (313)
Q Consensus       156 ~~T~g~~~~~~~~-~~~~~~i~D~~Gq~~~-----r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~---  226 (313)
                      .+|+|.....+.+ +++.+.+||++|++.+     +..|..++++++++|+|+|+++          ..++++...|   
T Consensus        36 ~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~----------~~s~~~l~~~~~~  105 (307)
T 3r7w_A           36 GATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVES----------TEVLKDIEIFAKA  105 (307)
T ss_dssp             CCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTC----------SCHHHHHHHHHHH
T ss_pred             CCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCC----------hhhHHHHHHHHHH
Confidence            4677777777666 6789999999999988     7899999999999999999998          5566555443   


Q ss_pred             HHHHHhCCCCCCCcEEEEeecCCccc--cc-----ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         227 FDSICNSKWFMDTSIILFLNKNDLFQ--EK-----ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       227 ~~~~~~~~~~~~~piilv~NK~Dl~~--~k-----~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      +..+...  ..++|++|++||+|+..  ++     ....+..+....+ .-..+.+++|||++ .++.++|..+.+.++
T Consensus       106 l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~-g~~~~~~~~tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          106 LKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEF-GFPNLIGFPTSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             HHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTT-TCCSCEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred             HHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHc-CCCCeEEEEeeecC-ChHHHHHHHHHHHHc
Confidence            4443321  34689999999999876  22     1112222222222 11147899999999 899999999886543

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.79  E-value=4.6e-20  Score=161.89  Aligned_cols=115  Identities=13%  Similarity=0.142  Sum_probs=85.2

Q ss_pred             cCceeeeEe-----------------------cCCCcccccccccccc---------------------CCcEEEEEEec
Q psy8318         169 KDLHFKMFD-----------------------VGGQRSERKKWIHCFE---------------------GVTAIIFCVAL  204 (313)
Q Consensus       169 ~~~~~~i~D-----------------------~~Gq~~~r~~w~~~~~---------------------~~~~iifv~dl  204 (313)
                      ..+.+++||                       ++|++.++.+|..+|.                     +++++|+|+|+
T Consensus        93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~  172 (255)
T 3c5h_A           93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV  172 (255)
T ss_dssp             ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred             cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence            457899999                       8999999999999998                     89999999999


Q ss_pred             CCccccccccccc--ccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeeccc
Q psy8318         205 SGYDSVLAEDEEM--NRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATD  282 (313)
Q Consensus       205 s~~d~~~~e~~~~--~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~  282 (313)
                      ++          .  .+++....|+..+.......++|++||+||+|+..++.. .+..+....   ..++.+++|||++
T Consensus       173 t~----------~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v-~~~~~~~~~---~~~~~~~e~SAk~  238 (255)
T 3c5h_A          173 SR----------GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI-RDAHTFALS---KKNLQVVETSARS  238 (255)
T ss_dssp             BC--------------CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH-HHHHHHHHT---SSSCCEEECBTTT
T ss_pred             CC----------CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH-HHHHHHHHh---cCCCeEEEEECCC
Confidence            98          5  677777777777654322346899999999998653221 121111111   1356789999999


Q ss_pred             CcCHHHHHHHHHHHH
Q psy8318         283 TSNIQFVFDAVTDVI  297 (313)
Q Consensus       283 ~~~v~~~f~~i~~~i  297 (313)
                      |.||.++|++|.+.+
T Consensus       239 g~gv~elf~~l~~~l  253 (255)
T 3c5h_A          239 NVNVDLAFSTLVQLI  253 (255)
T ss_dssp             TBSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998876

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.78  E-value=4.6e-19  Score=146.04  Aligned_cols=116  Identities=12%  Similarity=0.235  Sum_probs=79.9

Q ss_pred             ceeEEEEEecCceeeeEecCCCccccc---------cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH
Q psy8318         160 GIIETHFTFKDLHFKMFDVGGQRSERK---------KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI  230 (313)
Q Consensus       160 g~~~~~~~~~~~~~~i~D~~Gq~~~r~---------~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~  230 (313)
                      .+....+.+++..+.+|||+|++....         .| .++++++++++|+|+++          ..++. ...++..+
T Consensus        41 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~ad~~i~v~D~~~----------~~s~~-~~~~~~~~  108 (172)
T 2gj8_A           41 DVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAW-QEIEQADRVLFMVDGTT----------TDAVD-PAEIWPEF  108 (172)
T ss_dssp             SCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHH-HHHHTCSEEEEEEETTT----------CCCCS-HHHHCHHH
T ss_pred             ceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHH-HHHHhCCEEEEEEECCC----------CCCHH-HHHHHHHH
Confidence            334445666777899999999965321         22 36899999999999997          23322 23455444


Q ss_pred             HhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         231 CNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       231 ~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      ... ...++|+++|+||+|+..+..   +..       ....+.+++|||++|.||.++|++|.+.+.
T Consensus       109 ~~~-~~~~~p~ilv~NK~Dl~~~~~---~~~-------~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          109 IAR-LPAKLPITVVRNKADITGETL---GMS-------EVNGHALIRLSARTGEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             HHH-SCTTCCEEEEEECHHHHCCCC---EEE-------EETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred             HHh-cccCCCEEEEEECccCCcchh---hhh-------hccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence            332 234689999999999864311   111       113567899999999999999999988664

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.77  E-value=1.8e-18  Score=144.88  Aligned_cols=121  Identities=14%  Similarity=0.197  Sum_probs=86.8

Q ss_pred             EEEEEecC--ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc
Q psy8318         163 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS  240 (313)
Q Consensus       163 ~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p  240 (313)
                      ...+.+.+  +.+++||++|++.++..|..++++++++++|+|+++          ..++++...|+..+... ...+.|
T Consensus        68 ~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~~  136 (191)
T 1oix_A           68 TRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAK----------HLTYENVERWLKELRDH-ADSNIV  136 (191)
T ss_dssp             EEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCE
T ss_pred             EEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCCc
Confidence            34455554  566789999999999999999999999999999997          45555555555554321 224689


Q ss_pred             EEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         241 IILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       241 iilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +++++||+|+...+.........+.   ...++.++.|||+++.|+.++|++|.+.+
T Consensus       137 i~~v~nK~Dl~~~~~~~~~~a~~l~---~~~~~~~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          137 IMLVGNKSDLRHLRAVPTDEARAFA---EKNGLSFIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             EEEEEECGGGGGGCCSCHHHHHHHH---HHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEEECcccccccccCHHHHHHHH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999998753211111112221   12356788899999999999999998765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.77  E-value=6.8e-19  Score=146.34  Aligned_cols=119  Identities=16%  Similarity=0.120  Sum_probs=84.4

Q ss_pred             eEEEEEecCceeeeEecCCCcccc------cccccccc--CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC
Q psy8318         162 IETHFTFKDLHFKMFDVGGQRSER------KKWIHCFE--GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS  233 (313)
Q Consensus       162 ~~~~~~~~~~~~~i~D~~Gq~~~r------~~w~~~~~--~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~  233 (313)
                      ....+.+++..+.+|||+|+..++      ..|..|+.  +++++++|+|.+++             +....++..+.. 
T Consensus        45 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-------------~~~~~~~~~~~~-  110 (188)
T 2wjg_A           45 KEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL-------------ERNLYLTLQLME-  110 (188)
T ss_dssp             EEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH-------------HHHHHHHHHHHT-
T ss_pred             eEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH-------------HHHHHHHHHHHh-
Confidence            344566678899999999998875      45777775  59999999998862             223445555433 


Q ss_pred             CCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         234 KWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       234 ~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                         .+.|+++++||+|+..+......... +.   ...++.++++||+++.||.++|+++.+.+....
T Consensus       111 ---~~~piilv~nK~Dl~~~~~~~~~~~~-~~---~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          111 ---MGANLLLALNKMDLAKSLGIEIDVDK-LE---KILGVKVVPLSAAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             ---TTCCEEEEEECHHHHHHTTCCCCHHH-HH---HHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred             ---cCCCEEEEEEhhhccccccchHHHHH-HH---HHhCCCeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence               46899999999998754322222221 11   113467899999999999999999999876543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.77  E-value=7.8e-19  Score=146.85  Aligned_cols=109  Identities=11%  Similarity=0.108  Sum_probs=78.2

Q ss_pred             ceeeeEecCC----------CccccccccccccCC---cEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318         171 LHFKMFDVGG----------QRSERKKWIHCFEGV---TAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM  237 (313)
Q Consensus       171 ~~~~i~D~~G----------q~~~r~~w~~~~~~~---~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~  237 (313)
                      ..+.+|||+|          ++.++..|..+++++   +++++|+|+++          ..+..+ ..++..+ ..   .
T Consensus        69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~-~~~~~~~-~~---~  133 (195)
T 1svi_A           69 DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRH----------APSNDD-VQMYEFL-KY---Y  133 (195)
T ss_dssp             TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTS----------CCCHHH-HHHHHHH-HH---T
T ss_pred             CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCC----------CCCHHH-HHHHHHH-HH---c
Confidence            4799999999          788888888888777   99999999987          333332 2222222 21   4


Q ss_pred             CCcEEEEeecCCcccccccC---CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         238 DTSIILFLNKNDLFQEKITK---SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       238 ~~piilv~NK~Dl~~~k~~~---~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +.|+++|+||+|+.......   ..+.+.+.   ....+.++++||++|.||.++|++|.+.+
T Consensus       134 ~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          134 GIPVIVIATKADKIPKGKWDKHAKVVRQTLN---IDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TCCEEEEEECGGGSCGGGHHHHHHHHHHHHT---CCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCEEEEEECcccCChHHHHHHHHHHHHHHc---ccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence            68999999999987542111   22222232   22467899999999999999999998865

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.75  E-value=2.3e-19  Score=149.25  Aligned_cols=119  Identities=18%  Similarity=0.166  Sum_probs=73.4

Q ss_pred             eeeeEecCC-----------CccccccccccccC-CcEEEEEEecCCcccccccccccccHHHHHHHHHH---------H
Q psy8318         172 HFKMFDVGG-----------QRSERKKWIHCFEG-VTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDS---------I  230 (313)
Q Consensus       172 ~~~i~D~~G-----------q~~~r~~w~~~~~~-~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~---------~  230 (313)
                      .+.+|||+|           ++.++..|..|+.+ ++++++|+++.+          ..++.+....|..         +
T Consensus        45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d----------~~s~~~~~~~~~~~~~~~~~~~~  114 (190)
T 2cxx_A           45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVD----------GKAAPEIIKRWEKRGEIPIDVEF  114 (190)
T ss_dssp             TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEE----------TTHHHHHHHHHHHTTCCCHHHHH
T ss_pred             CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEc----------chhhhhHHHhhhccCccHHHHHH
Confidence            789999999           77888888888876 665555555555          3333333111110         1


Q ss_pred             HhCCCCCCCcEEEEeecCCcccccc-cCCcccccCc-CCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         231 CNSKWFMDTSIILFLNKNDLFQEKI-TKSPLTVCFP-EYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       231 ~~~~~~~~~piilv~NK~Dl~~~k~-~~~~l~~~f~-~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      .......+.|+++|+||+|+..... ....+...+. .+ ......+++|||++|.||.++|+++.+.+....
T Consensus       115 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          115 YQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL-SEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             HHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG-GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             HHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh-hccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence            1111114689999999999876430 0111211111 01 001235799999999999999999999886543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.74  E-value=1.6e-18  Score=144.64  Aligned_cols=111  Identities=13%  Similarity=0.144  Sum_probs=76.9

Q ss_pred             CceeeeEecCC----------CccccccccccccCC---cEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         170 DLHFKMFDVGG----------QRSERKKWIHCFEGV---TAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       170 ~~~~~i~D~~G----------q~~~r~~w~~~~~~~---~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      +..+.+|||+|          ++.++..|..+++++   +++++|+|.++..        .........++..       
T Consensus        67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~--------~~~~~~~~~~~~~-------  131 (195)
T 3pqc_A           67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPP--------QDSDLMMVEWMKS-------  131 (195)
T ss_dssp             TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--------CHHHHHHHHHHHH-------
T ss_pred             CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCC--------CHHHHHHHHHHHH-------
Confidence            56789999999          777888888888766   8999999988611        1111122222222       


Q ss_pred             CCCcEEEEeecCCccccccc---CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKIT---KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~---~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      .+.|+++|+||+|+..+...   ...+...+..+   ..+.++++||++|.||.++|++|.+.+.
T Consensus       132 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          132 LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY---GEYTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS---CCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc---CCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence            26899999999998643211   12233333322   3467999999999999999999998774

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.73  E-value=9.9e-19  Score=146.00  Aligned_cols=112  Identities=9%  Similarity=-0.002  Sum_probs=80.2

Q ss_pred             ecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHH---HHHHhCCC-CCCCcEEEEeecC-Ccc
Q psy8318         177 DVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF---DSICNSKW-FMDTSIILFLNKN-DLF  251 (313)
Q Consensus       177 D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~---~~~~~~~~-~~~~piilv~NK~-Dl~  251 (313)
                      +.|||.+.|.+|.+||++++++|||||++|          ..+++ +...+   ..+++... +.++|++|++||. |+.
T Consensus       108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD----------~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp  176 (227)
T 3l82_B          108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEA----------HKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV  176 (227)
T ss_dssp             ---------CCHHHHHHHCSEEEEEEECBT----------TCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred             ccCcHHHHHHHHHHHhcCCCEEEEEecccc----------HhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence            678999999999999999999999999998          45543 66666   44455543 5789999999995 786


Q ss_pred             cccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         252 QEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       252 ~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      .+ +...++.+.+..-.-++.|+++.|||++|+|+.+.++|+.+.+..+
T Consensus       177 ~A-ms~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          177 KR-MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             CB-CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             CC-CCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence            64 5555666655332224789999999999999999999999877544

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.72  E-value=6.9e-18  Score=163.16  Aligned_cols=112  Identities=13%  Similarity=0.182  Sum_probs=79.8

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ++..+.+||++|++.++..+..++++++++|+|+|+++          ...+..+...+....     .+.|++||+||+
T Consensus        96 ~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~----------~~~~~~~~~~l~~~~-----~~~pvilV~NK~  160 (535)
T 3dpu_A           96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRT----------DSNKHYWLRHIEKYG-----GKSPVIVVMNKI  160 (535)
T ss_dssp             TTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGG----------GGGHHHHHHHHHHHS-----SSCCEEEEECCT
T ss_pred             ceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCC----------chhHHHHHHHHHHhC-----CCCCEEEEEECC
Confidence            35889999999999999999999999999999999987          344444444443331     368999999999


Q ss_pred             Ccccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         249 DLFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       249 Dl~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      |+..++. ....+.+.++.    .++.++++||++|.||.++|+++.+.+..
T Consensus       161 Dl~~~~~v~~~~~~~~~~~----~~~~~~~vSA~~g~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          161 DENPSYNIEQKKINERFPA----IENRFHRISCKNGDGVESIAKSLKSAVLH  208 (535)
T ss_dssp             TTCTTCCCCHHHHHHHCGG----GTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred             CcccccccCHHHHHHHHHh----cCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence            9875422 22233333332    34568999999999999999999988754

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.72  E-value=1.3e-17  Score=146.54  Aligned_cols=118  Identities=16%  Similarity=0.153  Sum_probs=84.0

Q ss_pred             ceeEEEEEecCceeeeEecCCCccccccc------cccc--cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318         160 GIIETHFTFKDLHFKMFDVGGQRSERKKW------IHCF--EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC  231 (313)
Q Consensus       160 g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w------~~~~--~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~  231 (313)
                      ......+..++..+.+||++|+..++..|      ..|+  .+++++|+|+|.++.          .+   ...++..+.
T Consensus        41 ~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~----------~~---~~~~~~~l~  107 (258)
T 3a1s_A           41 EKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP----------EQ---SLYLLLEIL  107 (258)
T ss_dssp             EEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC----------HH---HHHHHHHHH
T ss_pred             EEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch----------hh---HHHHHHHHH
Confidence            33444566678899999999999887655      5565  589999999999972          22   234555554


Q ss_pred             hCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      .    .+.|+++++||+|+..++-...... .+.   ...++.+++|||++|.|+.++|+++.+.+.
T Consensus       108 ~----~~~pvilv~NK~Dl~~~~~i~~~~~-~l~---~~lg~~vi~~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          108 E----MEKKVILAMTAIDEAKKTGMKIDRY-ELQ---KHLGIPVVFTSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             T----TTCCEEEEEECHHHHHHTTCCBCHH-HHH---HHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             h----cCCCEEEEEECcCCCCccchHHHHH-HHH---HHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence            3    2689999999999865422211211 121   113567999999999999999999988764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.71  E-value=1.7e-17  Score=146.71  Aligned_cols=107  Identities=14%  Similarity=0.132  Sum_probs=77.5

Q ss_pred             CceeeeEecCCCcccc------cccccccc--CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318         170 DLHFKMFDVGGQRSER------KKWIHCFE--GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI  241 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r------~~w~~~~~--~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi  241 (313)
                      +..+.+|||+|+..++      .++..|+.  +++++|+|+|.++          ..+   ...+...+..    .+.|+
T Consensus        48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~----------~e~---~~~~~~~l~~----~~~p~  110 (272)
T 3b1v_A           48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATN----------LER---NLYLTTQLIE----TGIPV  110 (272)
T ss_dssp             CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGG----------HHH---HHHHHHHHHH----TCSCE
T ss_pred             CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCc----------hHh---HHHHHHHHHh----cCCCE
Confidence            6789999999998876      46677775  6999999999986          222   2344444443    36899


Q ss_pred             EEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         242 ILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       242 ilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ++++||+|+..++...... ..+.   ...++.+++|||++|.||.++|+++.+.+
T Consensus       111 ilv~NK~Dl~~~~~~~~~~-~~l~---~~lg~~vi~~SA~~g~gi~el~~~i~~~~  162 (272)
T 3b1v_A          111 TIALNMIDVLDGQGKKINV-DKLS---YHLGVPVVATSALKQTGVDQVVKKAAHTT  162 (272)
T ss_dssp             EEEEECHHHHHHTTCCCCH-HHHH---HHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred             EEEEEChhhCCcCCcHHHH-HHHH---HHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            9999999986543222221 1122   11356789999999999999999998754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.70  E-value=1.4e-18  Score=148.10  Aligned_cols=75  Identities=19%  Similarity=0.269  Sum_probs=63.1

Q ss_pred             cCceeeeEecCCCccccccccccccC----CcEEEEEEecC-CcccccccccccccHHHHHHHHHHHHhCC---CCCCCc
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEG----VTAIIFCVALS-GYDSVLAEDEEMNRMIESMKLFDSICNSK---WFMDTS  240 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~----~~~iifv~dls-~~d~~~~e~~~~~~l~e~~~~~~~~~~~~---~~~~~p  240 (313)
                      ....+.+||++|++.++..|..++.+    ++++|||+|++ +          ..++.+...++..++...   ...++|
T Consensus        53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p  122 (218)
T 1nrj_B           53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD----------PKKLTTTAEFLVDILSITESSCENGID  122 (218)
T ss_dssp             GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSC----------TTCCHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred             eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCC----------hHHHHHHHHHHHHHHhcccccccCCCC
Confidence            56789999999999999999999987    89999999999 6          677788888888776542   225789


Q ss_pred             EEEEeecCCcccc
Q psy8318         241 IILFLNKNDLFQE  253 (313)
Q Consensus       241 iilv~NK~Dl~~~  253 (313)
                      +++|+||+|+..+
T Consensus       123 ~ilv~nK~Dl~~~  135 (218)
T 1nrj_B          123 ILIACNKSELFTA  135 (218)
T ss_dssp             EEEEEECTTSTTC
T ss_pred             EEEEEEchHhccc
Confidence            9999999998653

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.69  E-value=1.2e-17  Score=142.77  Aligned_cols=117  Identities=9%  Similarity=0.074  Sum_probs=77.0

Q ss_pred             cCceeeeEecCCC----------ccccccccccccC---CcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         169 KDLHFKMFDVGGQ----------RSERKKWIHCFEG---VTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       169 ~~~~~~i~D~~Gq----------~~~r~~w~~~~~~---~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      ++..+.+|||+|.          +.++..+..|+..   ++++|||+|.++          .-. .....++..+ ..  
T Consensus        77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~-~~~~~~~~~l-~~--  142 (223)
T 4dhe_A           77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARR----------PLT-ELDRRMIEWF-AP--  142 (223)
T ss_dssp             TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTS----------CCC-HHHHHHHHHH-GG--
T ss_pred             CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCC----------CCC-HHHHHHHHHH-Hh--
Confidence            4688999999994          4445666677765   778999999986          111 2223333333 22  


Q ss_pred             CCCCcEEEEeecCCccccccc---CCcccccCcCC---CCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         236 FMDTSIILFLNKNDLFQEKIT---KSPLTVCFPEY---TDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~---~~~l~~~f~~~---~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                       .+.|+++|+||+|+......   ...+.+.+..+   .....+.++++||++|.||.++|++|.+.+...
T Consensus       143 -~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          143 -TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             -GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             -cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence             46899999999998653221   11122222211   012567899999999999999999999887543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.69  E-value=2.1e-17  Score=144.93  Aligned_cols=116  Identities=11%  Similarity=0.063  Sum_probs=81.9

Q ss_pred             ceeEEEEEecCceeeeEecCCCccccc----------cccccc--cCCcEEEEEEecCCcccccccccccccHHHHHHHH
Q psy8318         160 GIIETHFTFKDLHFKMFDVGGQRSERK----------KWIHCF--EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF  227 (313)
Q Consensus       160 g~~~~~~~~~~~~~~i~D~~Gq~~~r~----------~w~~~~--~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~  227 (313)
                      ......+.+++..+.+|||+|+..+..          .+..|+  .+++++|+|+|.++          ..+   ...+.
T Consensus        37 ~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~----------~~~---~~~l~  103 (256)
T 3iby_A           37 EKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH----------LER---HLYLT  103 (256)
T ss_dssp             EEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG----------HHH---HHHHH
T ss_pred             EEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC----------chh---HHHHH
Confidence            345556677888999999999987764          566677  89999999999996          222   23333


Q ss_pred             HHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         228 DSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       228 ~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      ..+..    .+.|+++++||+|+..++-....... +.   ...++.++++||++|.|+.++|+++.+.
T Consensus       104 ~~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~-l~---~~lg~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          104 SQLFE----LGKPVVVALNMMDIAEHRGISIDTEK-LE---SLLGCSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             HHHTT----SCSCEEEEEECHHHHHHTTCEECHHH-HH---HHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             HHHHH----cCCCEEEEEEChhcCCcCCcHHHHHH-HH---HHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            33322    26899999999998764321111111 11   1135679999999999999999999764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.67  E-value=4.1e-17  Score=144.56  Aligned_cols=117  Identities=15%  Similarity=0.102  Sum_probs=79.8

Q ss_pred             eeEEEEEecCceeeeEecCCCccccc----------cccccc--cCCcEEEEEEecCCcccccccccccccHHHHHHHHH
Q psy8318         161 IIETHFTFKDLHFKMFDVGGQRSERK----------KWIHCF--EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFD  228 (313)
Q Consensus       161 ~~~~~~~~~~~~~~i~D~~Gq~~~r~----------~w~~~~--~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~  228 (313)
                      .....+...+..+.+|||+|+..+..          .+..|+  ++++++|+|+|.++          ..+......++.
T Consensus        40 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~----------~~~~~~~~~~l~  109 (274)
T 3i8s_A           40 RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN----------LERNLYLTLQLL  109 (274)
T ss_dssp             EEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG----------HHHHHHHHHHHH
T ss_pred             EEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC----------hHHHHHHHHHHH
Confidence            44455666778999999999987762          344444  79999999999997          333333333332


Q ss_pred             HHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         229 SICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       229 ~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      +.       +.|+++++||+|+..+........ .+.   ...++.++++||++|.|+.++|+++.+.+.
T Consensus       110 ~~-------~~p~ivv~NK~Dl~~~~~~~~~~~-~l~---~~lg~~~i~~SA~~g~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          110 EL-------GIPCIVALNMLDIAEKQNIRIEID-ALS---ARLGCPVIPLVSTRGRGIEALKLAIDRYKA  168 (274)
T ss_dssp             HH-------TCCEEEEEECHHHHHHTTEEECHH-HHH---HHHTSCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred             hc-------CCCEEEEEECccchhhhhHHHHHH-HHH---HhcCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            22       689999999999865422111111 111   113467999999999999999999887553

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.67  E-value=1.8e-16  Score=140.16  Aligned_cols=120  Identities=17%  Similarity=0.117  Sum_probs=86.8

Q ss_pred             ceeEEEEEecCceeeeEecCCCccccc------cccccc--cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318         160 GIIETHFTFKDLHFKMFDVGGQRSERK------KWIHCF--EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC  231 (313)
Q Consensus       160 g~~~~~~~~~~~~~~i~D~~Gq~~~r~------~w~~~~--~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~  231 (313)
                      ......+.+++..+.+||++|+..+..      .+..|+  .+++++++|+|.++          .   .....++..+.
T Consensus        39 ~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~----------~---~~~~~~~~~~~  105 (271)
T 3k53_A           39 EKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTC----------L---MRNLFLTLELF  105 (271)
T ss_dssp             EEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGG----------H---HHHHHHHHHHH
T ss_pred             EeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCc----------c---hhhHHHHHHHH
Confidence            344556677888899999999988776      677777  78999999999986          2   34455555555


Q ss_pred             hCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      ..   ...|+++++||+|+..++-...... .+.   ...++.+++|||++|.|+.++|+++.+.+..
T Consensus       106 ~~---~~~p~ilv~NK~Dl~~~~~~~~~~~-~l~---~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~  166 (271)
T 3k53_A          106 EM---EVKNIILVLNKFDLLKKKGAKIDIK-KMR---KELGVPVIPTNAKKGEGVEELKRMIALMAEG  166 (271)
T ss_dssp             HT---TCCSEEEEEECHHHHHHHTCCCCHH-HHH---HHHSSCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred             hc---CCCCEEEEEEChhcCcccccHHHHH-HHH---HHcCCcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            43   2389999999999875432222221 111   1135678999999999999999999987643

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.67  E-value=1.8e-16  Score=142.77  Aligned_cols=115  Identities=13%  Similarity=0.116  Sum_probs=81.4

Q ss_pred             EEEec-CceeeeEecCCCcccc----------ccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC
Q psy8318         165 HFTFK-DLHFKMFDVGGQRSER----------KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS  233 (313)
Q Consensus       165 ~~~~~-~~~~~i~D~~Gq~~~r----------~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~  233 (313)
                      .+..+ +.++.+|||+|+....          ..+..++.++|+++||+|.++          ..+..+...|++.+.. 
T Consensus        52 ~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~----------~~~~~~~~~~~~~l~~-  120 (308)
T 3iev_A           52 VKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATE----------GWRPRDEEIYQNFIKP-  120 (308)
T ss_dssp             EEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTT----------BSCHHHHHHHHHHTGG-
T ss_pred             EEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCC----------CCCchhHHHHHHHHHh-
Confidence            34556 8899999999996544          667788999999999999997          4444443333444432 


Q ss_pred             CCCCCCcEEEEeecCCcc-cccccCC---cccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         234 KWFMDTSIILFLNKNDLF-QEKITKS---PLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       234 ~~~~~~piilv~NK~Dl~-~~k~~~~---~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                         .+.|+++|+||+|+. .......   .+.+.+.     ....++++||++|.|+.++|+++.+.+.
T Consensus       121 ---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~-----~~~~i~~vSA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          121 ---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP-----ELTEIVPISALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             ---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCT-----TCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             ---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhcc-----CCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence               468999999999986 3221111   1222221     2246899999999999999999988663

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.66  E-value=1.6e-17  Score=145.25  Aligned_cols=112  Identities=9%  Similarity=0.008  Sum_probs=84.1

Q ss_pred             ecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHH---HHHhCCC-CCCCcEEEEeec-CCcc
Q psy8318         177 DVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFD---SICNSKW-FMDTSIILFLNK-NDLF  251 (313)
Q Consensus       177 D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~---~~~~~~~-~~~~piilv~NK-~Dl~  251 (313)
                      |+|||.+.|.+|.+||++++++|||||++|          ..+++ +...+.   .++++.. ..++|++|++|| +|+.
T Consensus       193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsD----------reRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp  261 (312)
T 3l2o_B          193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEA----------HKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV  261 (312)
T ss_dssp             ----CCCCCHHHHHHHHHCSEEEECCBCBT----------TCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS
T ss_pred             CCCCHHHHHHHHHHHhcCCCEEEEEecCCc----------HhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc
Confidence            579999999999999999999999999999          56654 555444   4454432 578999999997 6887


Q ss_pred             cccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         252 QEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       252 ~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      .+ +...++.+.+..-.-++.|+++.|||++|+|+.+.++|+.+.+..+
T Consensus       262 ~A-ms~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          262 KR-MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             CB-CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             CC-CCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence            64 5555666654332224789999999999999999999999887543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.65  E-value=2.3e-16  Score=141.53  Aligned_cols=112  Identities=14%  Similarity=0.081  Sum_probs=76.5

Q ss_pred             EecCceeeeEecCCCcc--------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCC
Q psy8318         167 TFKDLHFKMFDVGGQRS--------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMD  238 (313)
Q Consensus       167 ~~~~~~~~i~D~~Gq~~--------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~  238 (313)
                      ..++.++.+|||+|+..        +...+..+++++|+++||+|.++          .....  ..++...+... ..+
T Consensus        51 ~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~----------~~~~~--~~~i~~~l~~~-~~~  117 (301)
T 1wf3_A           51 TEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRH----------PPTPE--DELVARALKPL-VGK  117 (301)
T ss_dssp             EETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTS----------CCCHH--HHHHHHHHGGG-TTT
T ss_pred             EeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCC----------CCChH--HHHHHHHHHhh-cCC
Confidence            44678999999999876        34556678899999999999986          21211  23332223321 246


Q ss_pred             CcEEEEeecCCcccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         239 TSIILFLNKNDLFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       239 ~piilv~NK~Dl~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      .|+++|+||+|+..+.. ....+..+   +   ....++++||++|.|+.++|+++.+.+
T Consensus       118 ~p~ilV~NK~Dl~~~~~~~~~~~~~~---~---~~~~~~~iSA~~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          118 VPILLVGNKLDAAKYPEEAMKAYHEL---L---PEAEPRMLSALDERQVAELKADLLALM  171 (301)
T ss_dssp             SCEEEEEECGGGCSSHHHHHHHHHHT---S---TTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEECcccCCchHHHHHHHHHh---c---CcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence            89999999999865321 11111111   1   223589999999999999999988754

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.64  E-value=2.4e-16  Score=149.64  Aligned_cols=119  Identities=14%  Similarity=0.118  Sum_probs=72.7

Q ss_pred             eeEEEEEecCceeeeEecCCCccccccc--------cccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318         161 IIETHFTFKDLHFKMFDVGGQRSERKKW--------IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN  232 (313)
Q Consensus       161 ~~~~~~~~~~~~~~i~D~~Gq~~~r~~w--------~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~  232 (313)
                      +....+.+++..+.+|||+|++..+..|        ..++++++++|+|+|.++...       ...+.+...++..+  
T Consensus       271 ~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s-------~~~~~~~~~~l~~l--  341 (476)
T 3gee_A          271 YIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERL-------DDELTEIRELKAAH--  341 (476)
T ss_dssp             --CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSS-------GGGHHHHHHHHHHC--
T ss_pred             EEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcc-------hhhhHHHHHHHHhc--
Confidence            3444566788899999999998766444        447899999999999997211       11122444444433  


Q ss_pred             CCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         233 SKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       233 ~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                          .+.|+++|+||+|+.......  . +.+.+.   ....++++||++|.||.++|++|.+.+.
T Consensus       342 ----~~~piIvV~NK~Dl~~~~~~~--~-~~l~~~---~~~~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          342 ----PAAKFLTVANKLDRAANADAL--I-RAIADG---TGTEVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             ----TTSEEEEEEECTTSCTTTHHH--H-HHHHHH---HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             ----CCCCEEEEEECcCCCCccchh--H-HHHHhc---CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence                268999999999987542111  0 111110   0135789999999999999999999875

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.63  E-value=1.4e-16  Score=148.98  Aligned_cols=117  Identities=10%  Similarity=0.116  Sum_probs=82.0

Q ss_pred             ceeEEEEEecCc-eeeeEecCCCcccccc-------ccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318         160 GIIETHFTFKDL-HFKMFDVGGQRSERKK-------WIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC  231 (313)
Q Consensus       160 g~~~~~~~~~~~-~~~i~D~~Gq~~~r~~-------w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~  231 (313)
                      ......+.+.+. .+.+|||+|+..+...       +..++.+++++|+|+|.+.          .....++   +..+.
T Consensus        71 d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~----------~~~~~~~---l~~l~  137 (423)
T 3qq5_A           71 DPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAP----------TPYEDDV---VNLFK  137 (423)
T ss_dssp             CCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSC----------CHHHHHH---HHHHH
T ss_pred             eeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCC----------hHHHHHH---HHHHH
Confidence            334445555554 8999999999877655       4458899999999999843          2333333   33332


Q ss_pred             hCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      ..    +.|+++|+||+|+..+...  +..+.+.   ...++.++++||++|.|+.++|++|.+.+.
T Consensus       138 ~~----~~piIvV~NK~Dl~~~~~~--~~~~~l~---~~~g~~v~~vSAktg~gI~eL~~~L~~~l~  195 (423)
T 3qq5_A          138 EM----EIPFVVVVNKIDVLGEKAE--ELKGLYE---SRYEAKVLLVSALQKKGFDDIGKTISEILP  195 (423)
T ss_dssp             HT----TCCEEEECCCCTTTTCCCT--HHHHHSS---CCTTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred             hc----CCCEEEEEeCcCCCCccHH--HHHHHHH---HHcCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence            22    6899999999998765321  2222232   224567899999999999999999998774

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.62  E-value=6.8e-16  Score=146.65  Aligned_cols=116  Identities=13%  Similarity=0.246  Sum_probs=81.4

Q ss_pred             eeEEEEEecCceeeeEecCCCc-ccc--------ccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318         161 IIETHFTFKDLHFKMFDVGGQR-SER--------KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC  231 (313)
Q Consensus       161 ~~~~~~~~~~~~~~i~D~~Gq~-~~r--------~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~  231 (313)
                      +....+.+++..+.+|||+|++ ...        ..+..+++.++++|+|+|+++          ..+.++ .++++.+ 
T Consensus       281 ~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~----------~~s~~~-~~il~~l-  348 (482)
T 1xzp_A          281 VISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASS----------PLDEED-RKILERI-  348 (482)
T ss_dssp             SCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTS----------CCCHHH-HHHHHHH-
T ss_pred             eEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCC----------CCCHHH-HHHHHHh-
Confidence            4445667788899999999997 443        234567899999999999987          333332 3344332 


Q ss_pred             hCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                           .+.|+++|+||+|+..+ ....++.+.++     ..+.++++||++|+|+.++|++|.+.+..
T Consensus       349 -----~~~piivV~NK~DL~~~-~~~~~~~~~~~-----~~~~~i~iSAktg~Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          349 -----KNKRYLVVINKVDVVEK-INEEEIKNKLG-----TDRHMVKISALKGEGLEKLEESIYRETQE  405 (482)
T ss_dssp             -----TTSSEEEEEEECSSCCC-CCHHHHHHHHT-----CSTTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred             -----cCCCEEEEEECcccccc-cCHHHHHHHhc-----CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence                 36799999999998653 22122222211     22457899999999999999999997663

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.62  E-value=3.6e-16  Score=130.42  Aligned_cols=75  Identities=19%  Similarity=0.269  Sum_probs=62.8

Q ss_pred             cCceeeeEecCCCccccccccccccC----CcEEEEEEecC-CcccccccccccccHHHHHHHHHHHHhCC---CCCCCc
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEG----VTAIIFCVALS-GYDSVLAEDEEMNRMIESMKLFDSICNSK---WFMDTS  240 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~----~~~iifv~dls-~~d~~~~e~~~~~~l~e~~~~~~~~~~~~---~~~~~p  240 (313)
                      .+..+.+|||+|+..++..|..++.+    ++++|||+|++ +          ..++.+...++..++...   ...+.|
T Consensus        89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p  158 (193)
T 2ged_A           89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD----------PKKLTTTAEFLVDILSITESSCENGID  158 (193)
T ss_dssp             CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCC----------HHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred             cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCC----------chhHHHHHHHHHHHHhhhhhccccCCC
Confidence            56789999999999999999999876    89999999999 6          677888888887776532   225789


Q ss_pred             EEEEeecCCcccc
Q psy8318         241 IILFLNKNDLFQE  253 (313)
Q Consensus       241 iilv~NK~Dl~~~  253 (313)
                      +++|+||+|+..+
T Consensus       159 ~ilv~nK~Dl~~~  171 (193)
T 2ged_A          159 ILIACNKSELFTA  171 (193)
T ss_dssp             EEEEEECTTSTTC
T ss_pred             EEEEEEchHhcCC
Confidence            9999999998653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.61  E-value=1.2e-15  Score=144.00  Aligned_cols=117  Identities=11%  Similarity=0.131  Sum_probs=80.2

Q ss_pred             eeEEEEEecCceeeeEecCCCcc---------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318         161 IIETHFTFKDLHFKMFDVGGQRS---------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC  231 (313)
Q Consensus       161 ~~~~~~~~~~~~~~i~D~~Gq~~---------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~  231 (313)
                      .....+.+++..+++|||||++.         ++..|..+++++|++|||+|.++          ....  ....+..++
T Consensus        39 ~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~----------~~~~--~d~~i~~~l  106 (439)
T 1mky_A           39 PVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKR----------GITK--EDESLADFL  106 (439)
T ss_dssp             CSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTT----------CCCH--HHHHHHHHH
T ss_pred             eeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCC----------CCCH--HHHHHHHHH
Confidence            33445667788999999999764         35678889999999999999875          1111  112222333


Q ss_pred             hCCCCCCCcEEEEeecCCcccccccCCcc-cccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         232 NSKWFMDTSIILFLNKNDLFQEKITKSPL-TVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l-~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      ..   .++|++|++||+|+... . .... .+ |..    .++ .++++||++|.|+.++|+++.+.+..
T Consensus       107 ~~---~~~p~ilv~NK~D~~~~-~-~~~~~~~-~~~----lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          107 RK---STVDTILVANKAENLRE-F-EREVKPE-LYS----LGFGEPIPVSAEHNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             HH---HTCCEEEEEESCCSHHH-H-HHHTHHH-HGG----GSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HH---cCCCEEEEEeCCCCccc-c-HHHHHHH-HHh----cCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence            22   35899999999998643 1 1111 11 111    122 46899999999999999999988764

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.61  E-value=7e-16  Score=145.44  Aligned_cols=111  Identities=16%  Similarity=0.153  Sum_probs=73.5

Q ss_pred             EEEecCceeeeEecCCCc--------cccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         165 HFTFKDLHFKMFDVGGQR--------SERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       165 ~~~~~~~~~~i~D~~Gq~--------~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      .+++++..+.+|||||++        .++..|..++++++++|||+|.++          ....  ...++..++..   
T Consensus        45 ~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~----------~~~~--~d~~~~~~l~~---  109 (436)
T 2hjg_A           45 SAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGRE----------GVTA--ADEEVAKILYR---  109 (436)
T ss_dssp             ECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTT----------CSCH--HHHHHHHHHTT---
T ss_pred             EEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCC----------CCCH--HHHHHHHHHHH---
Confidence            344567889999999996        677888999999999999999986          2222  22334444432   


Q ss_pred             CCCcEEEEeecCCcccccccCCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      .+.|++|++||+|+.....   ...+.. .    .++ .++++||++|.|+.++++++.+.+.
T Consensus       110 ~~~pvilv~NK~D~~~~~~---~~~~~~-~----lg~~~~~~iSA~~g~gv~~L~~~i~~~l~  164 (436)
T 2hjg_A          110 TKKPVVLAVNKLDNTEMRA---NIYDFY-S----LGFGEPYPISGTHGLGLGDLLDAVAEHFK  164 (436)
T ss_dssp             CCSCEEEEEECCCC--------CCCSSG-G----GSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred             cCCCEEEEEECccCccchh---hHHHHH-H----cCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence            4689999999999875321   111111 1    122 5789999999999999999988764

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.61  E-value=8.2e-16  Score=147.39  Aligned_cols=113  Identities=15%  Similarity=0.166  Sum_probs=82.9

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ++..++||||+|++.+...+..++..+|++|+|+|.++           .....+...+..+..    .++|+++++||+
T Consensus        50 ~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~d-----------g~~~qt~e~l~~~~~----~~vPiIVViNKi  114 (537)
T 3izy_P           50 SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADD-----------GVMKQTVESIQHAKD----AHVPIVLAINKC  114 (537)
T ss_dssp             CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSS-----------CCCHHHHHHHHHHHT----TTCCEEECCBSG
T ss_pred             CCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCC-----------CccHHHHHHHHHHHH----cCCcEEEEEecc
Confidence            35679999999999999999999999999999999997           333445555544432    367999999999


Q ss_pred             Cccccccc--CCccccc---CcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         249 DLFQEKIT--KSPLTVC---FPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       249 Dl~~~k~~--~~~l~~~---f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      |+......  ...+...   ..++  ...+.++++||++|.|+.++|+++...+.
T Consensus       115 Dl~~~~~~~v~~~l~~~~~~~e~~--~~~~~iv~vSAktG~GI~eLle~I~~l~~  167 (537)
T 3izy_P          115 DKAEADPEKVKKELLAYDVVCEDY--GGDVQAVHVSALTGENMMALAEATIALAE  167 (537)
T ss_dssp             GGTTTSCCSSSSHHHHTTSCCCCS--SSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred             cccccchHHHHHHHHhhhhhHHhc--CCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence            98753211  1122111   1122  13468899999999999999999987653

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.61  E-value=1.2e-15  Score=133.74  Aligned_cols=130  Identities=10%  Similarity=0.178  Sum_probs=78.6

Q ss_pred             cceeEEEEEecCceeeeEecCCCcccccc-----------ccccccCCcEEEEEEecCCcccccccccccccHHHHHHHH
Q psy8318         159 TGIIETHFTFKDLHFKMFDVGGQRSERKK-----------WIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLF  227 (313)
Q Consensus       159 ~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~-----------w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~  227 (313)
                      .......+.+++..+.+|||+|+......           ...++++++++|+|+|++++.         ........++
T Consensus        59 ~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~---------~~~~~~~~~l  129 (260)
T 2xtp_A           59 KTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYT---------SQDQQAAQRV  129 (260)
T ss_dssp             CSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCC---------HHHHHHHHHH
T ss_pred             eeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCC---------HHHHHHHHHH
Confidence            34444455667889999999998654322           223678999999999998631         2223344555


Q ss_pred             HHHHhCCCCCCCcEEEEee-cCCcccccccC-------CcccccCcCCCCCCC--eEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         228 DSICNSKWFMDTSIILFLN-KNDLFQEKITK-------SPLTVCFPEYTDQKE--IYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       228 ~~~~~~~~~~~~piilv~N-K~Dl~~~k~~~-------~~l~~~f~~~~~~~~--~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ...... . ...|.++++| |+|+....+..       ..+......+ ..+.  +..+++||++|.|+.++|++|.+.+
T Consensus       130 ~~~~~~-~-~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~  206 (260)
T 2xtp_A          130 KEIFGE-D-AMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAAC-GGRICAFNNRAEGSNQDDQVKELMDCIEDLL  206 (260)
T ss_dssp             HHHHCG-G-GGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT-TTCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCc-h-hhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHh-CCeEEEecCcccccccHHHHHHHHHHHHHHH
Confidence            554332 1 1346666665 99987532211       0111111111 1110  1126899999999999999999987


Q ss_pred             HHh
Q psy8318         298 IKA  300 (313)
Q Consensus       298 ~~~  300 (313)
                      ...
T Consensus       207 ~~~  209 (260)
T 2xtp_A          207 MEK  209 (260)
T ss_dssp             HHT
T ss_pred             HhC
Confidence            653

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.61  E-value=6.4e-15  Score=139.30  Aligned_cols=112  Identities=13%  Similarity=0.239  Sum_probs=70.8

Q ss_pred             EEEecCceeeeEecCCCcccccccc--------ccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         165 HFTFKDLHFKMFDVGGQRSERKKWI--------HCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       165 ~~~~~~~~~~i~D~~Gq~~~r~~w~--------~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      .+.+++..+.+|||+|++.....+.        .++..++++|+|+|.++          ..... ...++..+ .    
T Consensus       266 ~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~----------~~~~~-~~~i~~~l-~----  329 (462)
T 3geh_A          266 QLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAAT----------GWTTG-DQEIYEQV-K----  329 (462)
T ss_dssp             EEEETTEEEEECC--------------------CCCCSCSEEEEEEETTT----------CSCHH-HHHHHHHH-T----
T ss_pred             EEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCC----------CCCHH-HHHHHHhc-c----
Confidence            4556778899999999876554333        36789999999999997          22222 23444443 2    


Q ss_pred             CCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                       +.|+++|+||+|+...... ..+.    ++ . ....++++||++|.|+.++|++|.+.+...
T Consensus       330 -~~piivV~NK~Dl~~~~~~-~~~~----~~-~-~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~  385 (462)
T 3geh_A          330 -HRPLILVMNKIDLVEKQLI-TSLE----YP-E-NITQIVHTAAAQKQGIDSLETAILEIVQTG  385 (462)
T ss_dssp             -TSCEEEEEECTTSSCGGGS-TTCC----CC-T-TCCCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred             -CCcEEEEEECCCCCcchhh-HHHH----Hh-c-cCCcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence             3699999999998764321 1221    11 1 335689999999999999999999977543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.60  E-value=7.7e-16  Score=145.96  Aligned_cols=119  Identities=12%  Similarity=0.147  Sum_probs=83.2

Q ss_pred             EEEEecCceeeeEecCC----------Cccccccccc-cccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318         164 THFTFKDLHFKMFDVGG----------QRSERKKWIH-CFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN  232 (313)
Q Consensus       164 ~~~~~~~~~~~i~D~~G----------q~~~r~~w~~-~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~  232 (313)
                      ..+..++..+++|||+|          ++.++.++.. +++.++++|+|+|.++           .-.+....++..+..
T Consensus       236 ~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~-----------~~~~~~~~~~~~~~~  304 (456)
T 4dcu_A          236 TSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE-----------GIIEQDKRIAGYAHE  304 (456)
T ss_dssp             EEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT-----------CCCHHHHHHHHHHHH
T ss_pred             EEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCC-----------CcCHHHHHHHHHHHH
Confidence            34566778999999999          6777766654 7899999999999986           111223334444433


Q ss_pred             CCCCCCCcEEEEeecCCccccccc-CC----cccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         233 SKWFMDTSIILFLNKNDLFQEKIT-KS----PLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       233 ~~~~~~~piilv~NK~Dl~~~k~~-~~----~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                          .+.|++||+||+|+..+... ..    .+...++..   ..+.+++|||++|.||.++|+++.+.+...
T Consensus       305 ----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~  370 (456)
T 4dcu_A          305 ----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL---DYAPILFMSALTKKRIHTLMPAIIKASENH  370 (456)
T ss_dssp             ----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGG---TTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             ----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccC---CCCCEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence                46899999999998753211 11    122233222   345789999999999999999999887544

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.60  E-value=6.3e-15  Score=135.34  Aligned_cols=126  Identities=17%  Similarity=0.194  Sum_probs=85.2

Q ss_pred             ecceeEEEEEecCceeeeEecCCCcccc---------ccccccccCCcEEEEEEecCCcccccccccccc--cHHHHHHH
Q psy8318         158 TTGIIETHFTFKDLHFKMFDVGGQRSER---------KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMN--RMIESMKL  226 (313)
Q Consensus       158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r---------~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~--~l~e~~~~  226 (313)
                      |.+.....+..++..+.+|||+|+....         .....+...++++++|+|+++          ..  .+.+...+
T Consensus       201 t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~----------~~~~~~~~~~~~  270 (357)
T 2e87_A          201 TRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSE----------HCGFPLEEQIHL  270 (357)
T ss_dssp             SSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTC----------TTSSCHHHHHHH
T ss_pred             eeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCc----------cccCCHHHHHHH
Confidence            3344444555567889999999985432         111234457999999999987          33  56666777


Q ss_pred             HHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         227 FDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       227 ~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +..+....  .+.|+++|+||+|+...... .+......    ..++.++++||++|+||.++|+++.+.+...
T Consensus       271 ~~~i~~~~--~~~piilV~NK~Dl~~~~~~-~~~~~~~~----~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          271 FEEVHGEF--KDLPFLVVINKIDVADEENI-KRLEKFVK----EKGLNPIKISALKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             HHHHHHHT--TTSCEEEEECCTTTCCHHHH-HHHHHHHH----HTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhc--CCCCEEEEEECcccCChHHH-HHHHHHHH----hcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            77765421  26899999999998653211 11111111    1345688999999999999999999988643

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.59  E-value=5.4e-16  Score=146.21  Aligned_cols=121  Identities=12%  Similarity=0.149  Sum_probs=83.6

Q ss_pred             eEEEEEecCceeeeEecCCCc----------ccccccc-ccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH
Q psy8318         162 IETHFTFKDLHFKMFDVGGQR----------SERKKWI-HCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI  230 (313)
Q Consensus       162 ~~~~~~~~~~~~~i~D~~Gq~----------~~r~~w~-~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~  230 (313)
                      ....+.+++..+++|||+|+.          .++..+. .+++.++++|+|+|+++          ..+.++ ..++..+
T Consensus       214 ~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~----------~~s~~~-~~~~~~~  282 (436)
T 2hjg_A          214 VDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE----------GIIEQD-KRIAGYA  282 (436)
T ss_dssp             CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT----------CCCHHH-HHHHHHH
T ss_pred             eEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCc----------CCcHHH-HHHHHHH
Confidence            334556677889999999984          3333333 47889999999999997          333333 3455554


Q ss_pred             HhCCCCCCCcEEEEeecCCccccccc-C----CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         231 CNSKWFMDTSIILFLNKNDLFQEKIT-K----SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       231 ~~~~~~~~~piilv~NK~Dl~~~k~~-~----~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ..    .++|+++++||+|+..+... .    ..+...++..   ..+.++++||++|.||.++|+++.+.+...
T Consensus       283 ~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          283 HE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL---DYAPILFMSALTKKRIHTLMPAIIKASENH  350 (436)
T ss_dssp             HH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGG---TTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             HH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccC---CCCCEEEEecccCCCHHHHHHHHHHHHHHh
Confidence            33    46899999999998753211 1    1122333322   345789999999999999999999887653

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.58  E-value=5.6e-15  Score=138.05  Aligned_cols=114  Identities=16%  Similarity=0.106  Sum_probs=72.9

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      ..+.+|||+||+.+.+.+......+|++|+|+|.++          .-...++.+.+..+..   ....|+++++||+|+
T Consensus        81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~----------g~~~~qt~e~l~~~~~---l~~~~iivv~NK~Dl  147 (408)
T 1s0u_A           81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANE----------PCPQPQTKEHLMALEI---LGIDKIIIVQNKIDL  147 (408)
T ss_dssp             EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTS----------CSSCHHHHHHHHHHHH---TTCCCEEEEEECTTS
T ss_pred             cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCC----------CCCCchhHHHHHHHHH---cCCCeEEEEEEccCC
Confidence            579999999999998888888888999999999986          1112222332222211   123589999999998


Q ss_pred             cccccc---CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         251 FQEKIT---KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       251 ~~~k~~---~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      ......   ..++.+.+..+ ....+.++++||++|+|+.+++++|.+.+.
T Consensus       148 ~~~~~~~~~~~~i~~~l~~~-~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          148 VDEKQAEENYEQIKEFVKGT-IAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             SCTTTTTTHHHHHHHHHTTS-TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHHHHHHhhc-CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            754211   12233333333 224567899999999999999999987653

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.57  E-value=2.2e-15  Score=137.26  Aligned_cols=122  Identities=12%  Similarity=0.129  Sum_probs=82.3

Q ss_pred             EEecC-ceeeeEecCCCc----cccccccccc---cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC-CCC
Q psy8318         166 FTFKD-LHFKMFDVGGQR----SERKKWIHCF---EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS-KWF  236 (313)
Q Consensus       166 ~~~~~-~~~~i~D~~Gq~----~~r~~w~~~~---~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~-~~~  236 (313)
                      +.+.+ ..+.+||++|+.    ..+.++..++   +.++++|+|+|+++.+       ..+.+++...+..++... +..
T Consensus       200 v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~-------~~~~~~~~~~~~~eL~~~~~~l  272 (342)
T 1lnz_A          200 VETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLE-------GRDPYDDYLTINQELSEYNLRL  272 (342)
T ss_dssp             EECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSS-------CCCHHHHHHHHHHHHHHSCSST
T ss_pred             EEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCccc-------ccChHHHHHHHHHHHHHhhhhh
Confidence            44544 789999999963    2334445554   4599999999999732       124455555566665442 234


Q ss_pred             CCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      .+.|++||+||+|+..+......+.+.+.     ..+.++++||++++|+.++|++|.+.+..
T Consensus       273 ~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~-----~~~~v~~iSA~tg~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          273 TERPQIIVANKMDMPEAAENLEAFKEKLT-----DDYPVFPISAVTREGLRELLFEVANQLEN  330 (342)
T ss_dssp             TTSCBCBEEECTTSTTHHHHHHHHHHHCC-----SCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             cCCCEEEEEECccCCCCHHHHHHHHHHhh-----cCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence            67999999999998754211122323222     11457899999999999999999988753

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.56  E-value=7.8e-15  Score=136.90  Aligned_cols=114  Identities=12%  Similarity=0.062  Sum_probs=82.8

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      ..+.+|||+|++.+.+.+..++..+|++|+|+|.++          ...+.+...++..+...   ...|+++++||+|+
T Consensus        75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~----------~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl  141 (403)
T 3sjy_A           75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE----------PFPQPQTREHFVALGII---GVKNLIIVQNKVDV  141 (403)
T ss_dssp             EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTS----------CSSCHHHHHHHHHHHHH---TCCCEEEEEECGGG
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC----------CCCcHHHHHHHHHHHHc---CCCCEEEEEECccc
Confidence            679999999999999999999999999999999997          33344444444433211   22589999999998


Q ss_pred             cccccc---CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         251 FQEKIT---KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       251 ~~~k~~---~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      ......   ..++.+.+..+ ....+.++++||++|+|+.+++++|.+.+.
T Consensus       142 ~~~~~~~~~~~~i~~~l~~~-~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          142 VSKEEALSQYRQIKQFTKGT-WAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             SCHHHHHHHHHHHHHHHTTS-TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             cchHHHHHHHHHHHHHHHhh-CCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            654211   12333333333 223567999999999999999999987653

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.56  E-value=2e-14  Score=138.16  Aligned_cols=81  Identities=17%  Similarity=0.239  Sum_probs=64.0

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      .|+......+.+++..+++|||+|+..+...+..+++.++++|+|+|.++           .-......++..+..    
T Consensus        68 iTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~-----------g~~~~t~~~~~~~~~----  132 (528)
T 3tr5_A           68 ISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAK-----------GVEPRTIKLMEVCRL----  132 (528)
T ss_dssp             CSSSSSEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTT-----------CSCHHHHHHHHHHHT----
T ss_pred             eeEEEeEEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCC-----------CCCHHHHHHHHHHHH----
Confidence            34445556677889999999999999999999999999999999999997           222344555555433    


Q ss_pred             CCCcEEEEeecCCccc
Q psy8318         237 MDTSIILFLNKNDLFQ  252 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~  252 (313)
                      .++|+++|+||+|+..
T Consensus       133 ~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A          133 RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             TTCCEEEEEECTTSCC
T ss_pred             cCCCEEEEEeCCCCcc
Confidence            3689999999999864

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.56  E-value=7.3e-15  Score=139.72  Aligned_cols=113  Identities=15%  Similarity=0.124  Sum_probs=78.0

Q ss_pred             EecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEee
Q psy8318         167 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLN  246 (313)
Q Consensus       167 ~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~N  246 (313)
                      .+++..+++|||+||+.+...|..++..+|++|+|+|.++-           ...++...+.....    .+.|+++++|
T Consensus        47 ~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g-----------~~~qT~e~l~~~~~----~~vPiIVviN  111 (501)
T 1zo1_I           47 ETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDG-----------VMPQTIEAIQHAKA----AQVPVVVAVN  111 (501)
T ss_dssp             CTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTB-----------SCTTTHHHHHHHHH----TTCCEEEEEE
T ss_pred             EECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccC-----------ccHHHHHHHHHHHh----cCceEEEEEE
Confidence            33567899999999999999999999999999999998861           11122222222221    3689999999


Q ss_pred             cCCcccccc--cCCccc--ccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         247 KNDLFQEKI--TKSPLT--VCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       247 K~Dl~~~k~--~~~~l~--~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      |+|+.....  ....+.  ..+++. ....+.++++||++|.|+.++|+++..
T Consensus       112 KiDl~~~~~~~v~~~l~~~~~~~~~-~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          112 KIDKPEADPDRVKNELSQYGILPEE-WGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             CSSSSTTCCCCTTCCCCCCCCCTTC-CSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             eccccccCHHHHHHHHHHhhhhHHH-hCCCccEEEEeeeeccCcchhhhhhhh
Confidence            999875311  111221  112211 112468999999999999999999864

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.55  E-value=1.4e-14  Score=136.59  Aligned_cols=128  Identities=16%  Similarity=0.104  Sum_probs=81.8

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      ..|+.+....++..+..+.+|||+||+.+.+.+..+++.+|++|+|+|.++-..   |. ......++.+.+..+..   
T Consensus        80 GiTid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~---e~-~~~~~~qt~e~l~~~~~---  152 (439)
T 3j2k_7           80 GKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF---ET-GFEKGGQTREHAMLAKT---  152 (439)
T ss_pred             CceEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCcc---cc-ccCCCchHHHHHHHHHH---
Confidence            345555666677788899999999999999999999999999999999986210   00 00000122222222211   


Q ss_pred             CCCCc-EEEEeecCCcccccc-------cCCcccccCcCCC--CCCCeEEEEeecccCcCHHHHHH
Q psy8318         236 FMDTS-IILFLNKNDLFQEKI-------TKSPLTVCFPEYT--DQKEIYTHFTCATDTSNIQFVFD  291 (313)
Q Consensus       236 ~~~~p-iilv~NK~Dl~~~k~-------~~~~l~~~f~~~~--~~~~~~~~~tSA~~~~~v~~~f~  291 (313)
                       .+.| +++++||+|+.....       ...++...+..+.  ....+.++++||++|.|+.++++
T Consensus       153 -~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          153 -AGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             -cCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence             2455 999999999853211       1122222222221  11256899999999999998655

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.54  E-value=4.5e-14  Score=129.77  Aligned_cols=132  Identities=14%  Similarity=0.048  Sum_probs=81.8

Q ss_pred             eecceeEEEEEecCceeeeEecCCCcc---------ccccccccccCCcEEEEEEecCCcccccccccccc-cHHHHHHH
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRS---------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMN-RMIESMKL  226 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~---------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~-~l~e~~~~  226 (313)
                      +|.+.....+.+.+..+.+|||+|...         ++..+. .+..++.+++|+|+++          .. ...+....
T Consensus       212 ~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~----------~~~~~~~~~~~  280 (364)
T 2qtf_A          212 TTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTF----------SENLLIETLQS  280 (364)
T ss_dssp             --CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTS----------CHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCC----------CcchHHHHHHH
Confidence            344555556777778899999999732         333333 5788999999999986          22 12333333


Q ss_pred             HHHHHhCCCCCCCcEEEEeecCCcccccccC-Cccc-ccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         227 FDSICNSKWFMDTSIILFLNKNDLFQEKITK-SPLT-VCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       227 ~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~-~~l~-~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +..++......+.|+++|+||+|+....... .... .....+ ......++++||+++.|+.+++++|.+.+...
T Consensus       281 ~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          281 SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKEL-YSPIFDVIPISALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHH-CSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHh-cCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence            3333332233568999999999986532110 0000 000011 01234578999999999999999999877654

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.54  E-value=1.2e-14  Score=135.92  Aligned_cols=114  Identities=15%  Similarity=0.111  Sum_probs=78.6

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      ..+.+|||+|++.+.+.+......+|++|+|+|.++-.       ......+.+..+..+      ...|+++++||+|+
T Consensus        83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~-------~~~qt~e~l~~~~~~------~~~~iivviNK~Dl  149 (410)
T 1kk1_A           83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPC-------PRPQTREHLMALQII------GQKNIIIAQNKIEL  149 (410)
T ss_dssp             EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCS-------SCHHHHHHHHHHHHH------TCCCEEEEEECGGG
T ss_pred             cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCC-------CChhHHHHHHHHHHc------CCCcEEEEEECccC
Confidence            57999999999998887777788899999999998610       011222233333222      23589999999998


Q ss_pred             ccccc---cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         251 FQEKI---TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       251 ~~~k~---~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      .....   ...++.+++..+ ....+.++++||++|.|+.+++++|.+.+.
T Consensus       150 ~~~~~~~~~~~~i~~~l~~~-~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          150 VDKEKALENYRQIKEFIEGT-VAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             SCHHHHHHHHHHHHHHHTTS-TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHHHHHHHhc-CcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            75321   112334444332 224567999999999999999999987653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.53  E-value=6.8e-15  Score=139.42  Aligned_cols=110  Identities=16%  Similarity=0.173  Sum_probs=75.0

Q ss_pred             EecCceeeeEecCC--------CccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCC
Q psy8318         167 TFKDLHFKMFDVGG--------QRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMD  238 (313)
Q Consensus       167 ~~~~~~~~i~D~~G--------q~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~  238 (313)
                      +..+..+.+|||+|        ++.++..+..++++++++|||+|..+            .+.....++..++..   .+
T Consensus        67 ~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~------------~~~~~d~~l~~~l~~---~~  131 (456)
T 4dcu_A           67 EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGRE------------GVTAADEEVAKILYR---TK  131 (456)
T ss_dssp             TTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSS------------CSCHHHHHHHHHHTT---CC
T ss_pred             EECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCC------------CCChHHHHHHHHHHH---cC
Confidence            34678999999999        88888899999999999999999764            222333444455543   57


Q ss_pred             CcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         239 TSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       239 ~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      .|++||+||+|+.....   ...+.+. .  ..+ ..+++||++|.|+.++++++.+.+.
T Consensus       132 ~pvilV~NK~D~~~~~~---~~~e~~~-l--g~~-~~~~iSA~~g~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          132 KPVVLAVNKLDNTEMRA---NIYDFYS-L--GFG-EPYPISGTHGLGLGDLLDAVAEHFK  184 (456)
T ss_dssp             SCEEEEEECC------------CCSGG-G--SSS-SEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred             CCEEEEEECccchhhhh---hHHHHHH-c--CCC-ceEEeecccccchHHHHHHHHhhcc
Confidence            89999999999865321   1111111 1  011 3469999999999999999987653

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.53  E-value=2.1e-15  Score=133.50  Aligned_cols=123  Identities=14%  Similarity=0.159  Sum_probs=62.6

Q ss_pred             eeecceeEEEEEe--cC--ceeeeEecCCCc-------cccccc-------ccccc-------------CCcEEEEEEec
Q psy8318         156 VKTTGIIETHFTF--KD--LHFKMFDVGGQR-------SERKKW-------IHCFE-------------GVTAIIFCVAL  204 (313)
Q Consensus       156 ~~T~g~~~~~~~~--~~--~~~~i~D~~Gq~-------~~r~~w-------~~~~~-------------~~~~iifv~dl  204 (313)
                      .+|+++......+  ++  .++++|||+|+.       .++.++       ..|+.             .+|+++|+++.
T Consensus        46 ~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~  125 (274)
T 3t5d_A           46 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP  125 (274)
T ss_dssp             ---CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECS
T ss_pred             CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecC
Confidence            3566655544444  33  589999999973       233333       23332             37899999987


Q ss_pred             CCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccC---CcccccCcCCCCCCCeEEEEeecc
Q psy8318         205 SGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITK---SPLTVCFPEYTDQKEIYTHFTCAT  281 (313)
Q Consensus       205 s~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~---~~l~~~f~~~~~~~~~~~~~tSA~  281 (313)
                      +.          .........+++.+..     ++|+++|+||+|+....-..   ..+.+.+.    ..++.++.+||.
T Consensus       126 ~~----------~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~----~~~i~v~~~sa~  186 (274)
T 3t5d_A          126 SG----------HGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQ----EHKIKIYEFPET  186 (274)
T ss_dssp             CC----------SSCCHHHHHHHHHHTT-----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHH----HTTCCCCCC---
T ss_pred             CC----------CCCCHHHHHHHHHHhc-----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHH----HcCCeEEcCCCC
Confidence            75          1222333445555422     68999999999976421111   12222221    235567888999


Q ss_pred             cCcCHHHHHHHHHHHH
Q psy8318         282 DTSNIQFVFDAVTDVI  297 (313)
Q Consensus       282 ~~~~v~~~f~~i~~~i  297 (313)
                      +++|+.+++++|.+.+
T Consensus       187 ~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          187 DDEEENKLVKKIKDRL  202 (274)
T ss_dssp             --------CHHHHHTC
T ss_pred             CChhHHHHHHHHhcCC
Confidence            9999999999887643

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.52  E-value=2.7e-14  Score=131.51  Aligned_cols=126  Identities=10%  Similarity=0.037  Sum_probs=90.7

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      ..|+++....++.++..+.+|||+|++.+.+.....++.+|++|+|+| ++           ....+..+++..+..   
T Consensus        45 giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-----------g~~~qt~e~~~~~~~---  109 (370)
T 2elf_A           45 GTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-----------GLDAHTGECIIALDL---  109 (370)
T ss_dssp             EEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-----------CCCHHHHHHHHHHHH---
T ss_pred             CEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-----------CCcHHHHHHHHHHHH---
Confidence            466666666777788899999999999998888888899999999999 54           333444444443322   


Q ss_pred             CCCCcE-EEEee-cCCcccccc-cC--CcccccCcCCCCCCCeEEEE--eeccc---CcCHHHHHHHHHHHHHH
Q psy8318         236 FMDTSI-ILFLN-KNDLFQEKI-TK--SPLTVCFPEYTDQKEIYTHF--TCATD---TSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       236 ~~~~pi-ilv~N-K~Dl~~~k~-~~--~~l~~~f~~~~~~~~~~~~~--tSA~~---~~~v~~~f~~i~~~i~~  299 (313)
                       .+.|. ++++| |+|+ .+.. ..  .++.+.+..+ ....+.+++  +||++   ++|+.+++++|.+.+-.
T Consensus       110 -~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~-~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          110 -LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT-VLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             -TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS-TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred             -cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc-CCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence             24676 88899 9999 4321 11  3444444433 223568899  99999   99999999999887653

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.52  E-value=3.2e-14  Score=133.99  Aligned_cols=122  Identities=17%  Similarity=0.141  Sum_probs=76.9

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHH-------HHHHHHH
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI-------ESMKLFD  228 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~-------e~~~~~~  228 (313)
                      ..|+.+....++..+..+.+|||+|++.+.+.+..+++.+|++|+|+|.++           .+++       +..+.+.
T Consensus        69 giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-----------gsfe~~~~~~~qt~~~~~  137 (435)
T 1jny_A           69 GVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-----------GEYEAGMSVEGQTREHII  137 (435)
T ss_dssp             --------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-----------THHHHHHSTTCHHHHHHH
T ss_pred             CceeEeeEEEEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-----------CccccccccchHHHHHHH
Confidence            345555555667778999999999999999999999999999999999996           2222       2222222


Q ss_pred             HHHhCCCCCCCcEEEEeecCCccccc-------ccCCcccccCcCCC-CCCCeEEEEeecccCcCHHHHHH
Q psy8318         229 SICNSKWFMDTSIILFLNKNDLFQEK-------ITKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFVFD  291 (313)
Q Consensus       229 ~~~~~~~~~~~piilv~NK~Dl~~~k-------~~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~f~  291 (313)
                      ....   ..-.|+++++||+|+....       ....++.+.+..+. ....+.++++||++|+|+.+.+.
T Consensus       138 ~~~~---~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          138 LAKT---MGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             HHHH---TTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             HHHH---cCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            1111   1224799999999986521       01123333333221 11247899999999999976543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.52  E-value=1.1e-14  Score=138.64  Aligned_cols=127  Identities=11%  Similarity=0.098  Sum_probs=84.3

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      .|+.+....+.+++..+.+|||+|++.+.+.+..++..+|++|+|+|.++-           ...++.+.+..+ ..   
T Consensus        59 iTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g-----------~~~qt~e~l~~~-~~---  123 (482)
T 1wb1_A           59 ITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEG-----------PKTQTGEHMLIL-DH---  123 (482)
T ss_dssp             -----CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTC-----------SCHHHHHHHHHH-HH---
T ss_pred             cEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCC-----------ccHHHHHHHHHH-HH---
Confidence            344444445566778999999999999999999999999999999999861           112223322222 11   


Q ss_pred             CCCcEEEEeecCCccccc-c--cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEK-I--TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k-~--~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      .++|+++++||+|+..+. .  ...++.+.+.....-..+.++++||++|+|+.+++++|.+.+.
T Consensus       124 ~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          124 FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            357889999999986531 1  1122333222110002457899999999999999999998774

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.51  E-value=4.2e-14  Score=137.24  Aligned_cols=109  Identities=15%  Similarity=0.171  Sum_probs=79.2

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+++|||+|+..+...+..+++.++++|+|+|.++          .... ++...+.....    .+.|+++|+||+|+
T Consensus        73 ~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~----------gv~~-qt~~~~~~a~~----~~ipiIvviNKiDl  137 (600)
T 2ywe_A           73 YKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQ----------GIEA-QTVANFWKAVE----QDLVIIPVINKIDL  137 (600)
T ss_dssp             EEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTT----------BCCH-HHHHHHHHHHH----TTCEEEEEEECTTS
T ss_pred             EEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCC----------CccH-HHHHHHHHHHH----CCCCEEEEEeccCc
Confidence            789999999999999999999999999999999997          2333 23333333332    36899999999998


Q ss_pred             cccccc--CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         251 FQEKIT--KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       251 ~~~k~~--~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      ..+...  ..++.+.+. +   ....++++||++|.||.++|++|.+.+.
T Consensus       138 ~~a~~~~v~~el~~~lg-~---~~~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          138 PSADVDRVKKQIEEVLG-L---DPEEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             TTCCHHHHHHHHHHTSC-C---CGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             cccCHHHHHHHHHHhhC-C---CcccEEEEEeecCCCchHHHHHHHHhcc
Confidence            764211  112222221 1   1124789999999999999999988764

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.51  E-value=1.1e-13  Score=134.65  Aligned_cols=113  Identities=12%  Similarity=-0.003  Sum_probs=78.3

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      ..+++|||+||+.+...|..+++.+|++|+|+|+++-           -..++...+..+..    .++|+++++||+|+
T Consensus        70 ~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~G-----------v~~qT~e~l~~l~~----~~vPiIVViNKiDl  134 (594)
T 1g7s_A           70 PGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEG-----------FKPQTQEALNILRM----YRTPFVVAANKIDR  134 (594)
T ss_dssp             CEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTC-----------CCHHHHHHHHHHHH----TTCCEEEEEECGGG
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC-----------ccHhHHHHHHHHHH----cCCeEEEEeccccc
Confidence            3589999999999999999999999999999999961           11223333333322    46899999999998


Q ss_pred             ccccccC-------------C-----------cccc-----cCc-----CCC-CCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         251 FQEKITK-------------S-----------PLTV-----CFP-----EYT-DQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       251 ~~~k~~~-------------~-----------~l~~-----~f~-----~~~-~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      .......             .           ++.+     .+.     ... ....+.++++||++|.||.+++++|..
T Consensus       135 ~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~  214 (594)
T 1g7s_A          135 IHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMG  214 (594)
T ss_dssp             STTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHh
Confidence            6421000             0           0000     010     000 023468999999999999999999998


Q ss_pred             HHH
Q psy8318         296 VII  298 (313)
Q Consensus       296 ~i~  298 (313)
                      .+.
T Consensus       215 ~~~  217 (594)
T 1g7s_A          215 LAQ  217 (594)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            765

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.51  E-value=4.2e-14  Score=122.40  Aligned_cols=127  Identities=10%  Similarity=0.135  Sum_probs=75.5

Q ss_pred             ecceeEEEEEecCceeeeEecCC-----------CccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHH
Q psy8318         158 TTGIIETHFTFKDLHFKMFDVGG-----------QRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKL  226 (313)
Q Consensus       158 T~g~~~~~~~~~~~~~~i~D~~G-----------q~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~  226 (313)
                      |..+....+.+.+..+.+|||+|           ++.+.+.+..++.+++++|+|+|++.++         ....+++.+
T Consensus        65 t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~---------~~~~~~l~~  135 (239)
T 3lxx_A           65 TKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT---------EEEHKATEK  135 (239)
T ss_dssp             CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS---------SHHHHHHHH
T ss_pred             eeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC---------HHHHHHHHH
Confidence            33444555667788999999999           3456666777788999999999998743         122233333


Q ss_pred             HHHHHhCCCCCCCcEEEEeecCCcccccccCC-------cccccCcCCCCCCCeEEEEeecc-----cCcCHHHHHHHHH
Q psy8318         227 FDSICNSKWFMDTSIILFLNKNDLFQEKITKS-------PLTVCFPEYTDQKEIYTHFTCAT-----DTSNIQFVFDAVT  294 (313)
Q Consensus       227 ~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~-------~l~~~f~~~~~~~~~~~~~tSA~-----~~~~v~~~f~~i~  294 (313)
                      +...+...  ...|++||+||+|+........       .+.+....+    +..++.+++.     +..+|.++|+.+.
T Consensus       136 ~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~----~~~~~~~~~~~~~~~~~~~v~~ll~~i~  209 (239)
T 3lxx_A          136 ILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF----GDRYCALNNKATGAEQEAQRAQLLGLIQ  209 (239)
T ss_dssp             HHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHH----SSSEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc----CCEEEEEECCCCccccHHHHHHHHHHHH
Confidence            33332211  2359999999999865321111       122222222    2224444443     3468999999888


Q ss_pred             HHHHH
Q psy8318         295 DVIIK  299 (313)
Q Consensus       295 ~~i~~  299 (313)
                      +.+.+
T Consensus       210 ~~~~~  214 (239)
T 3lxx_A          210 RVVRE  214 (239)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.50  E-value=2.9e-14  Score=138.56  Aligned_cols=109  Identities=13%  Similarity=0.081  Sum_probs=78.9

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+++|||+|+..+...|..+++.++++|+|+|.++          ....+ +...+.....    .+.|+++|+||+|+
T Consensus        71 ~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~----------gv~~q-t~~~~~~~~~----~~ipiIvViNKiDl  135 (599)
T 3cb4_D           71 YQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQ----------GVEAQ-TLANCYTAME----MDLEVVPVLNKIDL  135 (599)
T ss_dssp             EEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTT----------CCCTH-HHHHHHHHHH----TTCEEEEEEECTTS
T ss_pred             EEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCC----------CCCHH-HHHHHHHHHH----CCCCEEEeeeccCc
Confidence            789999999999999999999999999999999987          22222 2333333332    36899999999998


Q ss_pred             cccccc--CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         251 FQEKIT--KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       251 ~~~k~~--~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      ..+...  ..++.+.+. +   ....++++||++|.||.++|+++.+.+.
T Consensus       136 ~~a~~~~v~~ei~~~lg-~---~~~~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          136 PAADPERVAEEIEDIVG-I---DATDAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             TTCCHHHHHHHHHHHTC-C---CCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             ccccHHHHHHHHHHHhC-C---CcceEEEeecccCCCchhHHHHHhhcCC
Confidence            764211  122333321 1   1123789999999999999999988764

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.50  E-value=3e-14  Score=132.66  Aligned_cols=126  Identities=17%  Similarity=0.204  Sum_probs=84.8

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      .|++.....+..++..+.+|||+|++.+.+.+..+++.+|++|+|+|.++-           ...++.+.+..+..    
T Consensus        52 iTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g-----------~~~qt~e~l~~~~~----  116 (397)
T 1d2e_A           52 ITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDG-----------PMPQTREHLLLARQ----  116 (397)
T ss_dssp             EEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTC-----------SCHHHHHHHHHHHH----
T ss_pred             cEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC-----------CCHHHHHHHHHHHH----
Confidence            455554455666778999999999999988899999999999999999872           22334444433222    


Q ss_pred             CCCc-EEEEeecCCccccc-c---cCCcccccCcCCC-CCCCeEEEEeecccCcC----------HHHHHHHHHHHH
Q psy8318         237 MDTS-IILFLNKNDLFQEK-I---TKSPLTVCFPEYT-DQKEIYTHFTCATDTSN----------IQFVFDAVTDVI  297 (313)
Q Consensus       237 ~~~p-iilv~NK~Dl~~~k-~---~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~----------v~~~f~~i~~~i  297 (313)
                      .++| +++++||+|+.... .   ...++.+.+..+. ....+.++++||++|.|          +.++++.+.+.+
T Consensus       117 ~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          117 IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence            3577 78999999987411 1   1122333333221 12246789999999775          778888776654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.50  E-value=3.7e-14  Score=133.71  Aligned_cols=119  Identities=13%  Similarity=0.098  Sum_probs=75.1

Q ss_pred             EEEEecCceeeeEecCCCccccccc------------cccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318         164 THFTFKDLHFKMFDVGGQRSERKKW------------IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC  231 (313)
Q Consensus       164 ~~~~~~~~~~~i~D~~Gq~~~r~~w------------~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~  231 (313)
                      ..+.+++..+.+|||+|++......            ..+++.++++++|+|.++          ..+..+ ..+... +
T Consensus       221 ~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~----------~~~~~~-~~i~~~-l  288 (439)
T 1mky_A          221 DEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQ----------GITRQD-QRMAGL-M  288 (439)
T ss_dssp             EEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTT----------CCCHHH-HHHHHH-H
T ss_pred             EEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCC----------CCCHHH-HHHHHH-H
Confidence            3556677889999999986544322            235677999999999986          222222 222222 2


Q ss_pred             hCCCCCCCcEEEEeecCCccccccc-CC----cccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         232 NSKWFMDTSIILFLNKNDLFQEKIT-KS----PLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       232 ~~~~~~~~piilv~NK~Dl~~~k~~-~~----~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ..   .++|+++++||+|+..+... ..    .+...+...   ....++++||++|.||.++|+.+.+.+...
T Consensus       289 ~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          289 ER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFI---DYSPLIFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             HH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGG---TTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccC---CCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            21   36899999999998653211 11    122223222   345689999999999999999998876543

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.49  E-value=4.1e-14  Score=133.25  Aligned_cols=121  Identities=12%  Similarity=-0.012  Sum_probs=80.0

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      -|+.+....+..++..+.+|||+|++.+.+.+..++..++++|+|+|.++-           ...+....+..+..   .
T Consensus        90 iTi~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g-----------~~~qt~~~l~~~~~---~  155 (434)
T 1zun_B           90 ITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG-----------VQTQTRRHSYIASL---L  155 (434)
T ss_dssp             CCCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC-----------SCHHHHHHHHHHHH---T
T ss_pred             cEEEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC-----------CcHHHHHHHHHHHH---c
Confidence            344444555666788999999999999999999999999999999999861           12233333332211   1


Q ss_pred             CCCcEEEEeecCCccccc---c--cCCcccccCcCCC-CCCCeEEEEeecccCcCHHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEK---I--TKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFVFD  291 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k---~--~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~f~  291 (313)
                      ...|+++++||+|+....   .  ...++.+.+..+. ....+.++++||++|.|+.++|.
T Consensus       156 ~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          156 GIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             TCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             CCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence            224699999999986521   1  1122222222221 02347899999999999987543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.48  E-value=3.9e-14  Score=135.11  Aligned_cols=125  Identities=18%  Similarity=0.131  Sum_probs=78.2

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      .|+.+....++.++..+.+|||+|++.+.+.+..+++.++++|+|+|.++-..   +.. ..-.......+.. +..  .
T Consensus        97 iTi~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~---~~~-~~~~~qt~e~~~~-~~~--~  169 (483)
T 3p26_A           97 VTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAF---ESG-FDLDGQTKEHMLL-ASS--L  169 (483)
T ss_dssp             SSCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC----------CCCCHHHHHHHHH-HHH--T
T ss_pred             cceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCcc---ccc-cchhhhHHHHHHH-HHH--c
Confidence            34445556677788999999999999999999999999999999999987210   000 0001112222211 111  1


Q ss_pred             CCCcEEEEeecCCccccc-cc----CCcccccCcCCC-CCCCeEEEEeecccCcCHHH
Q psy8318         237 MDTSIILFLNKNDLFQEK-IT----KSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQF  288 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k-~~----~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~  288 (313)
                      ...|++|++||+|+.... ..    ...+...+..+. ....+.++++||++|+|+.+
T Consensus       170 ~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          170 GIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             TCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             CCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            235799999999987521 11    112222222221 11257899999999999875

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.48  E-value=2.5e-14  Score=133.56  Aligned_cols=111  Identities=14%  Similarity=0.176  Sum_probs=75.0

Q ss_pred             ceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCC
Q psy8318         160 GIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDT  239 (313)
Q Consensus       160 g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~  239 (313)
                      ......+..++..+.+|||+|++.+.+.+..++..+|++|+|+|.++-           ...+...++..+..    .++
T Consensus        64 ~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g-----------~~~qt~~~l~~~~~----~~i  128 (405)
T 2c78_A           64 NTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG-----------PMPQTREHILLARQ----VGV  128 (405)
T ss_dssp             SCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTC-----------CCHHHHHHHHHHHH----TTC
T ss_pred             EeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCC-----------CcHHHHHHHHHHHH----cCC
Confidence            333345555778999999999999999999999999999999999862           22344444444322    256


Q ss_pred             c-EEEEeecCCccccc--c--cCCcccccCcCCC-CCCCeEEEEeecccCcC
Q psy8318         240 S-IILFLNKNDLFQEK--I--TKSPLTVCFPEYT-DQKEIYTHFTCATDTSN  285 (313)
Q Consensus       240 p-iilv~NK~Dl~~~k--~--~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~  285 (313)
                      | +++++||+|+....  +  ...++.+.+..+. ....+.++++||++|.|
T Consensus       129 p~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          129 PYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             CCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred             CEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence            7 89999999987421  1  1112333332221 11246789999999988

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.48  E-value=5.5e-14  Score=126.05  Aligned_cols=106  Identities=13%  Similarity=0.010  Sum_probs=77.6

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccc-cHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMN-RMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~-~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .++++||+  |++++.+|..||++++++|+|+|+++          +. ++.....|+..+-.    .++|++||+||+|
T Consensus        63 ~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~----------~~~s~~~l~~~l~~~~~----~~~piilv~NK~D  126 (301)
T 1u0l_A           63 GSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKM----------PETSTYIIDKFLVLAEK----NELETVMVINKMD  126 (301)
T ss_dssp             SSEEEEEE--CCCSCEETTTTEESCCEEEEEECSST----------TCCCHHHHHHHHHHHHH----TTCEEEEEECCGG
T ss_pred             CeEEEEEE--ccccceeeccccccCCEEEEEEeCCC----------CCCCHHHHHHHHHHHHH----CCCCEEEEEeHHH
Confidence            37999999  99999999999999999999999997          43 34444445544322    4689999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      +..+... .+..+....+ ... +.+++|||++|.||.++|.++..
T Consensus       127 L~~~~~v-~~~~~~~~~~-~~~-~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          127 LYDEDDL-RKVRELEEIY-SGL-YPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             GCCHHHH-HHHHHHHHHH-TTT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred             cCCchhH-HHHHHHHHHH-hhh-CcEEEEECCCCcCHHHHHHHhcC
Confidence            8653211 1122222223 222 67899999999999999998764

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.47  E-value=7.4e-14  Score=124.62  Aligned_cols=111  Identities=14%  Similarity=0.135  Sum_probs=72.3

Q ss_pred             CceeeeEecCCCc-------------cccccccccccCCcEEE-EEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         170 DLHFKMFDVGGQR-------------SERKKWIHCFEGVTAII-FCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       170 ~~~~~i~D~~Gq~-------------~~r~~w~~~~~~~~~ii-fv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      ...+.+|||+|+.             .++..+..|++.++++| +|+|.++          .-...+...+++.+ ..  
T Consensus       124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~----------~~~~~~~~~~~~~~-~~--  190 (299)
T 2aka_B          124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS----------DLANSDALKIAKEV-DP--  190 (299)
T ss_dssp             CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSS----------CGGGCHHHHHHHHH-CT--
T ss_pred             CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCc----------chhhhHHHHHHHHh-CC--
Confidence            4789999999964             34567778888888776 7999876          12222333344443 21  


Q ss_pred             CCCCcEEEEeecCCccccccc-CCcccccCcCCCCCCC-eEEEEeecccCcCHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKIT-KSPLTVCFPEYTDQKE-IYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~-~~~l~~~f~~~~~~~~-~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                       .+.|+++|+||+|+..+... ...+...+...  ..+ ..++++||++|.|+.++|+++.+.
T Consensus       191 -~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          191 -QGQRTIGVITKLDLMDEGTDARDVLENKLLPL--RRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             -TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCC--TTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             -CCCeEEEEEEccccCCCCchHHHHHhCCcCcC--CCCcEEEECCChhhccccccHHHHHHHH
Confidence             46899999999998753211 11111111111  122 357889999999999999998763

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.47  E-value=7.1e-14  Score=125.35  Aligned_cols=112  Identities=19%  Similarity=0.113  Sum_probs=74.5

Q ss_pred             EEecCceeeeEecCCCc---------cccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         166 FTFKDLHFKMFDVGGQR---------SERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       166 ~~~~~~~~~i~D~~Gq~---------~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      +..++..+.+|||+|+.         .+...+..+++.+++++||+|.+++          ....   .++...+..   
T Consensus        51 ~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~----------~~~~---~~i~~~l~~---  114 (301)
T 1ega_A           51 HTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRW----------TPDD---EMVLNKLRE---  114 (301)
T ss_dssp             EEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCC----------CHHH---HHHHHHHHS---
T ss_pred             EEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCC----------CHHH---HHHHHHHHh---
Confidence            34467889999999997         3445567788999999999998752          1111   122222332   


Q ss_pred             CCCcEEEEeecCCccccccc-CCcccccCcCCCCCCCe-EEEEeecccCcCHHHHHHHHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKIT-KSPLTVCFPEYTDQKEI-YTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~-~~~l~~~f~~~~~~~~~-~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      .+.|+++++||+|+...+.. ...+.+ +.   ...++ .++++||+++.|+.++++++.+.+
T Consensus       115 ~~~P~ilvlNK~D~~~~~~~~~~~l~~-l~---~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l  173 (301)
T 1ega_A          115 GKAPVILAVNKVDNVQEKADLLPHLQF-LA---SQMNFLDIVPISAETGLNVDTIAAIVRKHL  173 (301)
T ss_dssp             SSSCEEEEEESTTTCCCHHHHHHHHHH-HH---TTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             cCCCEEEEEECcccCccHHHHHHHHHH-HH---HhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence            36899999999998751111 111111 11   11233 588999999999999999988643

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.45  E-value=4.1e-14  Score=134.33  Aligned_cols=127  Identities=12%  Similarity=0.094  Sum_probs=65.7

Q ss_pred             eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCccc-ccccccccccHHHHHHHHHHHHhC
Q psy8318         155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDS-VLAEDEEMNRMIESMKLFDSICNS  233 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~-~~~e~~~~~~l~e~~~~~~~~~~~  233 (313)
                      +..|+++....+..++..+.+|||+||+.+.+.+..++..+|++|+|+|.++-.. ...+.  ...   +...+..... 
T Consensus       105 ~giTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~--~~q---t~e~l~~~~~-  178 (467)
T 1r5b_A          105 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFER--GGQ---TREHAVLART-  178 (467)
T ss_dssp             --------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTST--TCC---HHHHHHHHHH-
T ss_pred             cCceEEeeeEEEecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCC--CCc---HHHHHHHHHH-
Confidence            3456666656677788899999999999999999999999999999999986200 00000  012   2222222111 


Q ss_pred             CCCCCCc-EEEEeecCCcccccc-------cCCcccccCcC---CCCCCCeEEEEeecccCcCHHHHH
Q psy8318         234 KWFMDTS-IILFLNKNDLFQEKI-------TKSPLTVCFPE---YTDQKEIYTHFTCATDTSNIQFVF  290 (313)
Q Consensus       234 ~~~~~~p-iilv~NK~Dl~~~k~-------~~~~l~~~f~~---~~~~~~~~~~~tSA~~~~~v~~~f  290 (313)
                         .++| ++|++||+|+.....       ...++...+..   +.....+.++++||++|.|+.++|
T Consensus       179 ---~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          179 ---QGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             ---TTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ---cCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence               3466 999999999854110       01122222221   200125789999999999998765

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.45  E-value=1.7e-14  Score=132.62  Aligned_cols=109  Identities=11%  Similarity=0.151  Sum_probs=56.4

Q ss_pred             ceeeeEecCCC-------cccccccc-------ccccCC-------------cEEEEEEecCCcccccccccccccHHHH
Q psy8318         171 LHFKMFDVGGQ-------RSERKKWI-------HCFEGV-------------TAIIFCVALSGYDSVLAEDEEMNRMIES  223 (313)
Q Consensus       171 ~~~~i~D~~Gq-------~~~r~~w~-------~~~~~~-------------~~iifv~dls~~d~~~~e~~~~~~l~e~  223 (313)
                      ..+++|||+|+       +.++.+|.       .|++++             ++++|+++.+.           .++.+.
T Consensus        95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~-----------~~l~~~  163 (361)
T 2qag_A           95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-----------HGLKPL  163 (361)
T ss_dssp             EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSS-----------SSCCHH
T ss_pred             cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCC-----------CCcchh
Confidence            47999999999       77888886       666543             45777776532           233322


Q ss_pred             H-HHHHHHHhCCCCCCCcEEEEeecCCccccc-ccC--CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         224 M-KLFDSICNSKWFMDTSIILFLNKNDLFQEK-ITK--SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       224 ~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~k-~~~--~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      . .++..+ .    .++|+++|+||+|+.... +..  ..+.+..    ...++.++++||+++.+ .+.|.++.+.+.+
T Consensus       164 d~~~~~~l-~----~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~----~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~  233 (361)
T 2qag_A          164 DVAFMKAI-H----NKVNIVPVIAKADTLTLKERERLKKRILDEI----EEHNIKIYHLPDAESDE-DEDFKEQTRLLKA  233 (361)
T ss_dssp             HHHHHHHT-C----S-SCEEEEEECCSSSCHHHHHHHHHHHHHHT----TCC-CCSCCCC----------CHHHHHHHHH
T ss_pred             HHHHHHHh-c----cCCCEEEEEECCCCCCHHHHHHHHHHHHHHH----HHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence            2 333332 2    468999999999987532 111  1222222    23467789999999999 8999999988865


Q ss_pred             h
Q psy8318         300 A  300 (313)
Q Consensus       300 ~  300 (313)
                      .
T Consensus       234 ~  234 (361)
T 2qag_A          234 S  234 (361)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.42  E-value=2.4e-13  Score=128.78  Aligned_cols=122  Identities=14%  Similarity=0.059  Sum_probs=77.5

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHH---HHHHHHHHHHhC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMI---ESMKLFDSICNS  233 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~---e~~~~~~~~~~~  233 (313)
                      .|+.+....++..+..+.+|||+||+.+.+.+..++..+|++|+|+|.++-.       ...+++   .....+..... 
T Consensus        71 iTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~-------~~~sf~~~~qt~~~~~~~~~-  142 (458)
T 1f60_A           71 ITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE-------FEAGISKDGQTREHALLAFT-  142 (458)
T ss_dssp             CCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHH-------HHHHTCTTSHHHHHHHHHHH-
T ss_pred             cEEEEEEEEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCc-------cccccCcchhHHHHHHHHHH-
Confidence            4455555566777889999999999999999999999999999999998610       000010   23332222211 


Q ss_pred             CCCCCCc-EEEEeecCCccc--c-cc--cCCcccccCcCCC-CCCCeEEEEeecccCcCHHHH
Q psy8318         234 KWFMDTS-IILFLNKNDLFQ--E-KI--TKSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFV  289 (313)
Q Consensus       234 ~~~~~~p-iilv~NK~Dl~~--~-k~--~~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~  289 (313)
                         .++| +++++||+|+..  + ..  ...++.+.+..+. ....+.++++||++|.|+.+.
T Consensus       143 ---~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          143 ---LGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             ---TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             ---cCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence               2454 999999999873  1 11  1122332222221 112367899999999998644

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.41  E-value=1.4e-12  Score=129.37  Aligned_cols=83  Identities=17%  Similarity=0.069  Sum_probs=62.1

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .+|++.....+.+++..+++|||+|+..+...|..+++.+|++|+|+|.++.          .. ......+..+..   
T Consensus        62 giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g----------~~-~~t~~~~~~~~~---  127 (691)
T 1dar_A           62 GITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG----------VE-PQSETVWRQAEK---  127 (691)
T ss_dssp             -----CCEEEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTC----------SC-HHHHHHHHHHHH---
T ss_pred             ccccccceEEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCC----------cc-hhhHHHHHHHHH---
Confidence            4566666667778899999999999999999999999999999999999972          22 233344444433   


Q ss_pred             CCCCcEEEEeecCCcccc
Q psy8318         236 FMDTSIILFLNKNDLFQE  253 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~  253 (313)
                       .+.|+++|+||+|+...
T Consensus       128 -~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A          128 -YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             -TTCCEEEEEECTTSTTC
T ss_pred             -cCCCEEEEEECCCcccC
Confidence             36899999999998753

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.40  E-value=2.8e-13  Score=132.40  Aligned_cols=125  Identities=18%  Similarity=0.141  Sum_probs=77.8

Q ss_pred             ecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318         158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM  237 (313)
Q Consensus       158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~  237 (313)
                      |+.+....+..++..+.||||+|++.+.+.+..+++.++++|+|+|.++-.   .+. .......+...+..+ ..  ..
T Consensus       232 Tid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~---~e~-~~~~~~qt~e~l~~~-~~--lg  304 (611)
T 3izq_1          232 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNA---FES-GFDLDGQTKEHMLLA-SS--LG  304 (611)
T ss_dssp             CCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHH---HHT-TCCTTSHHHHHHHHH-HT--TT
T ss_pred             eEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCc---ccc-cchhhhHHHHHHHHH-HH--cC
Confidence            344444566778899999999999999999999999999999999998610   000 000011222222222 11  12


Q ss_pred             CCcEEEEeecCCccccc-cc----CCcccccCcCCC-CCCCeEEEEeecccCcCHHHH
Q psy8318         238 DTSIILFLNKNDLFQEK-IT----KSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQFV  289 (313)
Q Consensus       238 ~~piilv~NK~Dl~~~k-~~----~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~~  289 (313)
                      ..|++|++||+|+.... ..    ...+...+..+. ....+.++++||++|.||.++
T Consensus       305 i~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          305 IHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             CCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             CCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            34699999999986521 00    112222222221 112468899999999999865

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.39  E-value=3.3e-12  Score=122.78  Aligned_cols=81  Identities=17%  Similarity=0.217  Sum_probs=60.8

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      .|+......+.+++..+++|||+|+..+...+..++..++++|+|+|.++-           -......++... .   .
T Consensus        68 iTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g-----------~~~~t~~~~~~~-~---~  132 (529)
T 2h5e_A           68 ISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG-----------VEDRTRKLMEVT-R---L  132 (529)
T ss_dssp             --CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC-----------SCHHHHHHHHHH-T---T
T ss_pred             cceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCcc-----------chHHHHHHHHHH-H---H
Confidence            444555567788899999999999999999899999999999999999872           112233333332 2   2


Q ss_pred             CCCcEEEEeecCCccc
Q psy8318         237 MDTSIILFLNKNDLFQ  252 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~  252 (313)
                      .++|+++|+||+|+..
T Consensus       133 ~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A          133 RDTPILTFMNKLDRDI  148 (529)
T ss_dssp             TTCCEEEEEECTTSCC
T ss_pred             cCCCEEEEEcCcCCcc
Confidence            4689999999999865

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.36  E-value=1.4e-12  Score=114.53  Aligned_cols=82  Identities=10%  Similarity=0.139  Sum_probs=53.9

Q ss_pred             ceeEEEEEecCceeeeEecCCCcccccccccccc---------CCcEEEEEEecCCcccccccccccccH-HHHHHHHHH
Q psy8318         160 GIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFE---------GVTAIIFCVALSGYDSVLAEDEEMNRM-IESMKLFDS  229 (313)
Q Consensus       160 g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~---------~~~~iifv~dls~~d~~~~e~~~~~~l-~e~~~~~~~  229 (313)
                      ......+..++..+.+|||+|+..++.....+++         ++++++||+|++...        .... .+....+..
T Consensus        73 ~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~--------~~~~~~~~~~~l~~  144 (262)
T 3def_A           73 RPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA--------VDELDKQVVIAITQ  144 (262)
T ss_dssp             CCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC--------CCHHHHHHHHHHHH
T ss_pred             eeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC--------CCHHHHHHHHHHHH
Confidence            3444556678889999999999887766655554         789999999987511        1111 133333433


Q ss_pred             HHhCCCCCCCcEEEEeecCCcc
Q psy8318         230 ICNSKWFMDTSIILFLNKNDLF  251 (313)
Q Consensus       230 ~~~~~~~~~~piilv~NK~Dl~  251 (313)
                      ....  ....|+++|+||+|+.
T Consensus       145 ~~~~--~~~~~~ivv~nK~Dl~  164 (262)
T 3def_A          145 TFGK--EIWCKTLLVLTHAQFS  164 (262)
T ss_dssp             HHCG--GGGGGEEEEEECTTCC
T ss_pred             Hhch--hhhcCEEEEEeCcccC
Confidence            3321  1124999999999985

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.36  E-value=6.1e-13  Score=135.63  Aligned_cols=119  Identities=17%  Similarity=0.188  Sum_probs=79.6

Q ss_pred             EEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCc-EE
Q psy8318         164 THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTS-II  242 (313)
Q Consensus       164 ~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~p-ii  242 (313)
                      ..++.++..+.+|||+||+.+.+.+..++..+|++|+|+|.++-.           ..++.+.+..+..    .++| ++
T Consensus       352 v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv-----------~~QTrEhL~ll~~----lgIP~II  416 (1289)
T 3avx_A          352 VEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGP-----------MPQTREHILLGRQ----VGVPYII  416 (1289)
T ss_dssp             EEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCS-----------CTTHHHHHHHHHH----HTCSCEE
T ss_pred             EEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccC-----------cHHHHHHHHHHHH----cCCCeEE
Confidence            345556789999999999999988889999999999999999721           1222333322211    2467 89


Q ss_pred             EEeecCCccccc--c--cCCcccccCcCCC-CCCCeEEEEeecccC--------cCHHHHHHHHHHHH
Q psy8318         243 LFLNKNDLFQEK--I--TKSPLTVCFPEYT-DQKEIYTHFTCATDT--------SNIQFVFDAVTDVI  297 (313)
Q Consensus       243 lv~NK~Dl~~~k--~--~~~~l~~~f~~~~-~~~~~~~~~tSA~~~--------~~v~~~f~~i~~~i  297 (313)
                      |++||+|+....  +  ...++.+.+..+. ....+.++++||++|        .|+.+++++|.+.+
T Consensus       417 VVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          417 VFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             EEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             EEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence            999999987421  1  1122333332221 123467899999999        46777887776644

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.35  E-value=3.1e-12  Score=126.37  Aligned_cols=77  Identities=10%  Similarity=0.061  Sum_probs=58.9

Q ss_pred             ceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCC
Q psy8318         160 GIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDT  239 (313)
Q Consensus       160 g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~  239 (313)
                      ......+..++..+++|||+|+..++..+..+++.++++++|+|.++-           -......++..+..    .+.
T Consensus        63 ~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g-----------~~~qt~~~~~~~~~----~~i  127 (665)
T 2dy1_A           63 RTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAG-----------VQVGTERAWTVAER----LGL  127 (665)
T ss_dssp             SCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTC-----------SCHHHHHHHHHHHH----TTC
T ss_pred             EecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcc-----------cchhHHHHHHHHHH----ccC
Confidence            334445566788999999999999999999999999999999998751           11233345544433    368


Q ss_pred             cEEEEeecCCcc
Q psy8318         240 SIILFLNKNDLF  251 (313)
Q Consensus       240 piilv~NK~Dl~  251 (313)
                      |+++++||+|+.
T Consensus       128 p~ilv~NKiD~~  139 (665)
T 2dy1_A          128 PRMVVVTKLDKG  139 (665)
T ss_dssp             CEEEEEECGGGC
T ss_pred             CEEEEecCCchh
Confidence            999999999986

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.34  E-value=3.4e-13  Score=131.40  Aligned_cols=121  Identities=17%  Similarity=0.127  Sum_probs=58.3

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccc--cccHHHHHHHHHHHHhCC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEE--MNRMIESMKLFDSICNSK  234 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~--~~~l~e~~~~~~~~~~~~  234 (313)
                      .|+.+....+..++..+.||||+|++.+.+.+..++..++++|+|+|.++-.   .+..-  .....+...+...     
T Consensus       241 iTid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~---~e~gi~~~~qt~e~l~~~~~-----  312 (592)
T 3mca_A          241 VTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNN---FERGFLENGQTREHAYLLRA-----  312 (592)
T ss_dssp             ------------------CCEEESSSEEEEECCC-------CCSEEEEEECC---SSTTSCSCSSHHHHHHHHHH-----
T ss_pred             eeEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCc---cccccccchHHHHHHHHHHH-----
Confidence            3444555566667789999999999999999999999999999999998510   00000  1122222222221     


Q ss_pred             CCCCCc-EEEEeecCCcccc--c-c--cCCcccccC-cCCC-CCCCeEEEEeecccCcCHH
Q psy8318         235 WFMDTS-IILFLNKNDLFQE--K-I--TKSPLTVCF-PEYT-DQKEIYTHFTCATDTSNIQ  287 (313)
Q Consensus       235 ~~~~~p-iilv~NK~Dl~~~--k-~--~~~~l~~~f-~~~~-~~~~~~~~~tSA~~~~~v~  287 (313)
                        .++| ++|++||+|+...  . .  ...++...+ ..+. ....+.++++||++|.||.
T Consensus       313 --lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          313 --LGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             --SSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             --cCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence              2344 9999999998641  1 1  112233333 2221 1235689999999999997

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.32  E-value=1.1e-11  Score=123.18  Aligned_cols=83  Identities=13%  Similarity=0.085  Sum_probs=61.5

Q ss_pred             eeecceeEEEEEecC-------ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHH
Q psy8318         156 VKTTGIIETHFTFKD-------LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFD  228 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~-------~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~  228 (313)
                      ..|++.....+.+++       ..+++|||+|+..+...+..+++.+|++|+|+|.++.           ....+...+.
T Consensus        60 giTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-----------v~~qt~~~~~  128 (704)
T 2rdo_7           60 GITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGG-----------VQPQSETVWR  128 (704)
T ss_pred             CceeeeceEEEEECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCC-----------CcHHHHHHHH
Confidence            345554444555555       8999999999999999999999999999999999972           1223344444


Q ss_pred             HHHhCCCCCCCcEEEEeecCCcccc
Q psy8318         229 SICNSKWFMDTSIILFLNKNDLFQE  253 (313)
Q Consensus       229 ~~~~~~~~~~~piilv~NK~Dl~~~  253 (313)
                      ....    .+.|+++|+||+|+...
T Consensus       129 ~~~~----~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7          129 QANK----YKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             HHHH----cCCCEEEEEeCCCcccc
Confidence            4322    36899999999998653

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.31  E-value=5.5e-12  Score=125.05  Aligned_cols=83  Identities=11%  Similarity=0.093  Sum_probs=62.4

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      ..|++.....+.+++..+++|||+|+..+...+..+++.+|++|+|+|.++          ... ......+..+..   
T Consensus        60 giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~----------g~~-~~~~~~~~~~~~---  125 (693)
T 2xex_A           60 GITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQS----------GVE-PQTETVWRQATT---  125 (693)
T ss_dssp             ----CCSEEEEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTT----------BSC-HHHHHHHHHHHH---
T ss_pred             CceEeeeeEEEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCC----------CCc-HHHHHHHHHHHH---
Confidence            455665566777888999999999999999999999999999999999987          222 233444554433   


Q ss_pred             CCCCcEEEEeecCCcccc
Q psy8318         236 FMDTSIILFLNKNDLFQE  253 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~  253 (313)
                       .+.|+++|+||+|+...
T Consensus       126 -~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A          126 -YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             -TTCCEEEEEECTTSTTC
T ss_pred             -cCCCEEEEEECCCcccc
Confidence             36899999999998653

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.30  E-value=5.3e-12  Score=106.38  Aligned_cols=110  Identities=5%  Similarity=0.093  Sum_probs=67.4

Q ss_pred             eeeeEecCCCcc----------ccccccccc---cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCC
Q psy8318         172 HFKMFDVGGQRS----------ERKKWIHCF---EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMD  238 (313)
Q Consensus       172 ~~~i~D~~Gq~~----------~r~~w~~~~---~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~  238 (313)
                      .+.+||++|+..          +++....++   ..++++++++|+++          ..+..+ .. +..++..   .+
T Consensus        73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~----------~~~~~~-~~-~~~~~~~---~~  137 (210)
T 1pui_A           73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRH----------PLKDLD-QQ-MIEWAVD---SN  137 (210)
T ss_dssp             TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTS----------CCCHHH-HH-HHHHHHH---TT
T ss_pred             CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCC----------CCchhH-HH-HHHHHHH---cC
Confidence            688999999842          122222344   57899999999986          222211 11 1122221   35


Q ss_pred             CcEEEEeecCCccccccc---CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         239 TSIILFLNKNDLFQEKIT---KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       239 ~piilv~NK~Dl~~~k~~---~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      .|+++++||+|+......   ...+...+.+.  ...+..++|||+++.|+.+++++|.+.+.
T Consensus       138 ~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          138 IAVLVLLTKADKLASGARKAQLNMVREAVLAF--NGDVQVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             CCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG--CSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             CCeEEEEecccCCCchhHHHHHHHHHHHHHhc--CCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence            799999999998643111   11122222211  13467889999999999999999988653

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.27  E-value=1.4e-11  Score=110.72  Aligned_cols=116  Identities=16%  Similarity=0.136  Sum_probs=70.5

Q ss_pred             cCceeeeEecCCCcc-------------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         169 KDLHFKMFDVGGQRS-------------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~-------------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .+..+.+|||+|...             ++..+..++.+++++|+|+|.++-+-       ...  +...+...+ ..  
T Consensus       129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~-------~~~--~~~~i~~~~-~~--  196 (315)
T 1jwy_B          129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL-------ANS--DALQLAKEV-DP--  196 (315)
T ss_dssp             TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS-------TTC--SHHHHHHHH-CS--
T ss_pred             CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch-------hhh--HHHHHHHHh-CC--
Confidence            457899999999753             45667778999999999999865210       001  112333333 22  


Q ss_pred             CCCCcEEEEeecCCccccccc-CCcccccCcCCCCCCCeEEEEeeccc---CcCHHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATD---TSNIQFVFDAVTDVII  298 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~---~~~v~~~f~~i~~~i~  298 (313)
                       .+.|+++|+||+|+....-. ...+...+..+ ....+.+..+||.+   +.|+.++++.+.+.+.
T Consensus       197 -~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~  261 (315)
T 1jwy_B          197 -EGKRTIGVITKLDLMDKGTDAMEVLTGRVIPL-TLGFIGVINRSQEDIIAKKSIRESLKSEILYFK  261 (315)
T ss_dssp             -SCSSEEEEEECTTSSCSSCCCHHHHTTSSSCC-TTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             -CCCcEEEEEcCcccCCcchHHHHHHhCCCccC-CCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence             46899999999998753211 11111111111 01112345566776   7899999998887664

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.26  E-value=5e-11  Score=118.21  Aligned_cols=115  Identities=13%  Similarity=0.204  Sum_probs=76.1

Q ss_pred             ceeeeEecCCCcc---ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeec
Q psy8318         171 LHFKMFDVGGQRS---ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNK  247 (313)
Q Consensus       171 ~~~~i~D~~Gq~~---~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK  247 (313)
                      ..+.+|||+|...   ....+..|+.++|++|||+|.++          ..+..+ ...+...+..   .+.|+++|+||
T Consensus       174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~----------~~s~~e-~~~l~~~l~~---~~~~iiiVlNK  239 (695)
T 2j69_A          174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQ----------PCTLGE-RRYLENYIKG---RGLTVFFLVNA  239 (695)
T ss_dssp             TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTS----------TTCHHH-HHHHHHHTTT---SCCCEEEEEEC
T ss_pred             CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCC----------ccchhH-HHHHHHHHHh---hCCCEEEEEEC
Confidence            5799999999654   45677789999999999999986          333333 2333333332   25789999999


Q ss_pred             CCcccccc-cCCc----------cc----ccCcCCCC-----CCCeEEEEeecc--------------cCcCHHHHHHHH
Q psy8318         248 NDLFQEKI-TKSP----------LT----VCFPEYTD-----QKEIYTHFTCAT--------------DTSNIQFVFDAV  293 (313)
Q Consensus       248 ~Dl~~~k~-~~~~----------l~----~~f~~~~~-----~~~~~~~~tSA~--------------~~~~v~~~f~~i  293 (313)
                      +|+..... ....          +.    ..+..+..     .....++++||+              ++.|+.++++++
T Consensus       240 ~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L  319 (695)
T 2j69_A          240 WDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSL  319 (695)
T ss_dssp             GGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHH
T ss_pred             cccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHH
Confidence            99865421 1110          11    01111100     123458999999              999999999999


Q ss_pred             HHHHHH
Q psy8318         294 TDVIIK  299 (313)
Q Consensus       294 ~~~i~~  299 (313)
                      .+.+..
T Consensus       320 ~~~l~~  325 (695)
T 2j69_A          320 NTFLTR  325 (695)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987754

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.24  E-value=1.8e-11  Score=112.39  Aligned_cols=113  Identities=12%  Similarity=0.064  Sum_probs=73.8

Q ss_pred             cCceeeeEecCCCccc-------------cccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         169 KDLHFKMFDVGGQRSE-------------RKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~-------------r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      ....+.+|||+|+...             +.+...|+.+++++|+|+|.++-+         ....++..++..+.    
T Consensus       134 ~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~---------~~~~~~~~l~~~~~----  200 (360)
T 3t34_A          134 NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQD---------LATSDAIKISREVD----  200 (360)
T ss_dssp             TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSC---------GGGCHHHHHHHHSC----
T ss_pred             CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCC---------cCCHHHHHHHHHhc----
Confidence            3568999999998776             667778899999999999987521         11133444444431    


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ..+.|+++|+||+|+..+.....++.+.   +....++.++.+++..+.++.+.+.+.....
T Consensus       201 ~~~~~~i~V~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~  259 (360)
T 3t34_A          201 PSGDRTFGVLTKIDLMDKGTDAVEILEG---RSFKLKYPWVGVVNRSQADINKNVDMIAARK  259 (360)
T ss_dssp             TTCTTEEEEEECGGGCCTTCCSHHHHTT---SSSCCSSCCEEECCCCHHHHHTTCCHHHHHH
T ss_pred             ccCCCEEEEEeCCccCCCcccHHHHHcC---ccccccCCeEEEEECChHHhccCCCHHHHHH
Confidence            2467999999999987542211111111   1122445678899999988887666544433

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.24  E-value=1.7e-11  Score=114.24  Aligned_cols=115  Identities=11%  Similarity=0.168  Sum_probs=72.9

Q ss_pred             ceeeeEecCCCcc----ccccccc---cccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEE
Q psy8318         171 LHFKMFDVGGQRS----ERKKWIH---CFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIIL  243 (313)
Q Consensus       171 ~~~~i~D~~Gq~~----~r~~w~~---~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piil  243 (313)
                      ..+.+||++|...    .+.+...   ..+.++.+++++|+++  .      ....+....+.+..+  .+.+...|.+|
T Consensus       205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~--~------~~~~ls~g~~el~~l--a~aL~~~P~IL  274 (416)
T 1udx_A          205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAAD--E------PLKTLETLRKEVGAY--DPALLRRPSLV  274 (416)
T ss_dssp             CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTS--C------HHHHHHHHHHHHHHH--CHHHHHSCEEE
T ss_pred             ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCcc--C------CHHHHHHHHHHHHHH--hHHhhcCCEEE
Confidence            7889999999742    2222222   3457999999999971  1      122333333333222  11223579999


Q ss_pred             EeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         244 FLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       244 v~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ++||+|+... .....+.+.+.    ..++.++.+||++++|+.+++++|.+.+...
T Consensus       275 VlNKlDl~~~-~~~~~l~~~l~----~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~  326 (416)
T 1udx_A          275 ALNKVDLLEE-EAVKALADALA----REGLAVLPVSALTGAGLPALKEALHALVRST  326 (416)
T ss_dssp             EEECCTTSCH-HHHHHHHHHHH----TTTSCEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             EEECCChhhH-HHHHHHHHHHH----hcCCeEEEEECCCccCHHHHHHHHHHHHHhc
Confidence            9999998754 11122222221    2345789999999999999999999988653

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.24  E-value=2.8e-11  Score=106.60  Aligned_cols=77  Identities=12%  Similarity=0.079  Sum_probs=48.0

Q ss_pred             EEEecCceeeeEecCCCcccccccc-------cc--ccCCcEEEEEEecCCcccccccccccccHHH-HHHHHHHHHhC-
Q psy8318         165 HFTFKDLHFKMFDVGGQRSERKKWI-------HC--FEGVTAIIFCVALSGYDSVLAEDEEMNRMIE-SMKLFDSICNS-  233 (313)
Q Consensus       165 ~~~~~~~~~~i~D~~Gq~~~r~~w~-------~~--~~~~~~iifv~dls~~d~~~~e~~~~~~l~e-~~~~~~~~~~~-  233 (313)
                      .+..++..+.+|||+|+..+.....       .|  ..+++++|||+|++..           ++.+ ...++..+... 
T Consensus        81 ~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-----------~~~~~~~~~~~~l~~~~  149 (270)
T 1h65_A           81 SRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-----------RVDNLDKLVAKAITDSF  149 (270)
T ss_dssp             EEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-----------CCCHHHHHHHHHHHHHH
T ss_pred             EEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-----------cCCHHHHHHHHHHHHHh
Confidence            4455778999999999976653322       12  3479999999998751           2221 12333333221 


Q ss_pred             CCCCCCcEEEEeecCCccc
Q psy8318         234 KWFMDTSIILFLNKNDLFQ  252 (313)
Q Consensus       234 ~~~~~~piilv~NK~Dl~~  252 (313)
                      ......|+++|+||+|+..
T Consensus       150 ~~~~~~~iivV~nK~Dl~~  168 (270)
T 1h65_A          150 GKGIWNKAIVALTHAQFSP  168 (270)
T ss_dssp             CGGGGGGEEEEEECCSCCC
T ss_pred             CcccccCEEEEEECcccCC
Confidence            0001269999999999853

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.16  E-value=4.5e-12  Score=113.57  Aligned_cols=108  Identities=13%  Similarity=0.158  Sum_probs=55.9

Q ss_pred             ceeeeEecCCC-------cccccccc-------ccccC-------------CcEEEEEEecCCcccccccccccccHHHH
Q psy8318         171 LHFKMFDVGGQ-------RSERKKWI-------HCFEG-------------VTAIIFCVALSGYDSVLAEDEEMNRMIES  223 (313)
Q Consensus       171 ~~~~i~D~~Gq-------~~~r~~w~-------~~~~~-------------~~~iifv~dls~~d~~~~e~~~~~~l~e~  223 (313)
                      ..+++||++|+       +.++.++.       .|+++             +++++|+.+.+.           .+++..
T Consensus        76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-----------~~Ld~~  144 (301)
T 2qnr_A           76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-----------HGLKPL  144 (301)
T ss_dssp             EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-----------SSCCHH
T ss_pred             cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-----------cCCCHH
Confidence            57899999998       55666654       55433             234666666542           112111


Q ss_pred             -HHHHHHHHhCCCCCCCcEEEEeecCCccccc-cc--CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         224 -MKLFDSICNSKWFMDTSIILFLNKNDLFQEK-IT--KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       224 -~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k-~~--~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                       .+++..+.     .+.|+++|+||.|+.... +.  ...+.+...    ..++.++++||+++ |+.++|.++.+.+..
T Consensus       145 ~~~~l~~l~-----~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~----~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          145 DVAFMKAIH-----NKVNIVPVIAKADTLTLKERERLKKRILDEIE----EHNIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             HHHHHHHHT-----TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHH----HTTCCCCCCC----------CHHHHHHHHT
T ss_pred             HHHHHHHHH-----hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHH----HcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence             23333331     357999999999986432 11  112222222    23567899999999 999999999998864

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.13  E-value=4.3e-11  Score=109.54  Aligned_cols=109  Identities=15%  Similarity=0.156  Sum_probs=66.2

Q ss_pred             CceeeeEecCCCc-------------cccccccccccCCcEEEE-EEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         170 DLHFKMFDVGGQR-------------SERKKWIHCFEGVTAIIF-CVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       170 ~~~~~i~D~~Gq~-------------~~r~~w~~~~~~~~~iif-v~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      ...+.+|||+|..             ..+.++..|+.+++.+|+ |+|.+. +         -.-.++..+++.+.    
T Consensus       129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~-~---------~~~~~~~~i~~~~~----  194 (353)
T 2x2e_A          129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS-D---------LANSDALKVAKEVD----  194 (353)
T ss_dssp             CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTS-C---------GGGCHHHHHHHHHC----
T ss_pred             CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCC-c---------cchhHHHHHHHHhC----
Confidence            5789999999963             234566677877766555 444432 1         11112333444442    


Q ss_pred             CCCCcEEEEeecCCcccccccCCcc-cc-cCcCCCCCCC-eEEEEeecccCcCHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPL-TV-CFPEYTDQKE-IYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l-~~-~f~~~~~~~~-~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      ..+.|+++|+||+|+..+.....++ .. .++   ...+ ..++.+||+++.|+.++++++.+
T Consensus       195 ~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~---l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          195 PQGQRTIGVITKLDLMDEGTDARDVLENKLLP---LRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             TTCTTEEEEEECGGGSCTTCCCHHHHTTCSSC---CTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             cCCCceEEEeccccccCcchhHHHHHhCCccc---ccCCceEEEeCCcccccccccHHHHHHH
Confidence            1468999999999987532111111 11 111   1123 35678999999999999998876

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.09  E-value=3e-11  Score=110.72  Aligned_cols=109  Identities=13%  Similarity=0.060  Sum_probs=70.1

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .+..+.+|||+|...   -.......+|++|+|+|.+..++.          .       .+ . ....+.|+++|+||+
T Consensus       170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~----------~-------~l-~-~~~~~~p~ivVlNK~  227 (355)
T 3p32_A          170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQL----------Q-------GI-K-KGVLELADIVVVNKA  227 (355)
T ss_dssp             TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTT----------T-------TC-C-TTSGGGCSEEEEECC
T ss_pred             CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccH----------H-------HH-H-HhHhhcCCEEEEECC
Confidence            578899999999432   233345889999999998763211          0       00 0 112346999999999


Q ss_pred             Ccccccc---cCCcccccCcCCC---CCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         249 DLFQEKI---TKSPLTVCFPEYT---DQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       249 Dl~~~k~---~~~~l~~~f~~~~---~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      |+....-   ....+...+..+.   ......++.+||++|+|+.+++++|.+.+..
T Consensus       228 Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          228 DGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             CCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            9864311   1112222221110   1124568999999999999999999987754

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.09  E-value=1.8e-10  Score=116.47  Aligned_cols=68  Identities=9%  Similarity=0.043  Sum_probs=54.6

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      +..+++|||+|+..+...|..+++.++++|+|+|.++          ....+ ....+.....    .+.|+++|+||+|
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~----------g~~~q-t~~~~~~~~~----~~~p~ilviNK~D  161 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIE----------GVCVQ-TETVLRQALG----ERIKPVVVINKVD  161 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTT----------BSCHH-HHHHHHHHHH----TTCEEEEEEECHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCC----------CCCHH-HHHHHHHHHH----cCCCeEEEEECCC
Confidence            5789999999999999999999999999999999997          33333 3344444433    3689999999999


Q ss_pred             ccc
Q psy8318         250 LFQ  252 (313)
Q Consensus       250 l~~  252 (313)
                      +..
T Consensus       162 ~~~  164 (842)
T 1n0u_A          162 RAL  164 (842)
T ss_dssp             HHH
T ss_pred             cch
Confidence            863

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.08  E-value=1.8e-10  Score=97.78  Aligned_cols=106  Identities=10%  Similarity=0.028  Sum_probs=66.4

Q ss_pred             cCceeeeEecCCCccccccccccc-cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeec
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCF-EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNK  247 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~-~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK  247 (313)
                      .+..+.+|||+|+...    +.++ ...+.+++|+|.++.+         ...    ..+...      .+.|+++++||
T Consensus       107 ~~~d~iiidt~G~~~~----~~~~~~~~~~~i~vvd~~~~~---------~~~----~~~~~~------~~~~~iiv~NK  163 (221)
T 2wsm_A          107 SDCDLLLIENVGNLIC----PVDFDLGENYRVVMVSVTEGD---------DVV----EKHPEI------FRVADLIVINK  163 (221)
T ss_dssp             TTCSEEEEEEEEBSSG----GGGCCCSCSEEEEEEEGGGCT---------THH----HHCHHH------HHTCSEEEEEC
T ss_pred             CCCCEEEEeCCCCCCC----CchhccccCcEEEEEeCCCcc---------hhh----hhhhhh------hhcCCEEEEec
Confidence            4578899999996211    1122 3578899999998731         111    011111      13689999999


Q ss_pred             CCccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         248 NDLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       248 ~Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      +|+.... .....+.+.+..+  ...+.++++||++|.|+.++|+++.+.+..
T Consensus       164 ~Dl~~~~~~~~~~~~~~~~~~--~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          164 VALAEAVGADVEKMKADAKLI--NPRAKIIEMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             GGGHHHHTCCHHHHHHHHHHH--CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             ccCCcchhhHHHHHHHHHHHh--CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence            9986531 1112222222222  134678999999999999999999987753

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.05  E-value=1.9e-10  Score=100.42  Aligned_cols=114  Identities=13%  Similarity=0.006  Sum_probs=67.3

Q ss_pred             ceeeeEecCCCcccccccc------ccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEE
Q psy8318         171 LHFKMFDVGGQRSERKKWI------HCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILF  244 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~------~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv  244 (313)
                      +.+.+|||+|+......+.      .++.+ +.+|+++|.+....       ...+............   ..+.|+++|
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~-------~~~~~~~~~~~~~~~~---~~~~p~~iv  177 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKK-------PNDYCFVRFFALLIDL---RLGATTIPA  177 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCS-------HHHHHHHHHHHHHHHH---HHTSCEEEE
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcC-------HHHHHHHHHHHHHHhc---ccCCCeEEE
Confidence            5789999999976433221      24567 89999999875210       1112211111111111   125799999


Q ss_pred             eecCCcccccccCCcccc----------c------------------CcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         245 LNKNDLFQEKITKSPLTV----------C------------------FPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       245 ~NK~Dl~~~k~~~~~l~~----------~------------------f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      +||+|+....- ...+.+          .                  ..++  .....++++||++++|+.+++++|.+.
T Consensus       178 ~NK~D~~~~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~SA~~~~gi~~l~~~i~~~  254 (262)
T 1yrb_A          178 LNKVDLLSEEE-KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEV--LPPVRVLYLSAKTREGFEDLETLAYEH  254 (262)
T ss_dssp             ECCGGGCCHHH-HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHH--SCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             Eeccccccccc-HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHh--cCcccceEEEecCcccHHHHHHHHHHH
Confidence            99999864320 000000          0                  0111  122357899999999999999999887


Q ss_pred             HH
Q psy8318         297 II  298 (313)
Q Consensus       297 i~  298 (313)
                      +.
T Consensus       255 ~~  256 (262)
T 1yrb_A          255 YC  256 (262)
T ss_dssp             HH
T ss_pred             hc
Confidence            64

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.04  E-value=9.1e-10  Score=106.22  Aligned_cols=84  Identities=17%  Similarity=0.213  Sum_probs=64.6

Q ss_pred             eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      |.-|+......+.+++..++++||+|+..|..--...++-+|++|+|+|..+           --...+...|+....  
T Consensus        84 RGITI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~-----------GV~~qT~~v~~~a~~--  150 (548)
T 3vqt_A           84 RGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAK-----------GVEAQTRKLMDVCRM--  150 (548)
T ss_dssp             ----CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTT-----------BSCHHHHHHHHHHHH--
T ss_pred             CCCcEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCC-----------CcccccHHHHHHHHH--
Confidence            4445555566788999999999999999888777777889999999999996           344556667766654  


Q ss_pred             CCCCCcEEEEeecCCcccc
Q psy8318         235 WFMDTSIILFLNKNDLFQE  253 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~~  253 (313)
                        .+.|.++|.||+|....
T Consensus       151 --~~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          151 --RATPVMTFVNKMDREAL  167 (548)
T ss_dssp             --TTCCEEEEEECTTSCCC
T ss_pred             --hCCceEEEEecccchhc
Confidence              46899999999998653

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.00  E-value=1.9e-10  Score=106.69  Aligned_cols=37  Identities=27%  Similarity=0.390  Sum_probs=24.5

Q ss_pred             ceeeeEecCCCcc----cccc---ccccccCCcEEEEEEecCCc
Q psy8318         171 LHFKMFDVGGQRS----ERKK---WIHCFEGVTAIIFCVALSGY  207 (313)
Q Consensus       171 ~~~~i~D~~Gq~~----~r~~---w~~~~~~~~~iifv~dls~~  207 (313)
                      ..+.+|||+|+..    .+.+   +..++++++++++|+|.++-
T Consensus        71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred             EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            5799999999853    2223   33567999999999999873

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.98  E-value=4.9e-10  Score=95.48  Aligned_cols=59  Identities=10%  Similarity=0.086  Sum_probs=40.8

Q ss_pred             CcEEEEeecCCccccc-ccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         239 TSIILFLNKNDLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       239 ~piilv~NK~Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      .|.++++||+|+..+. .....+...+..+  ...+.++++||++|.|+.++|+++.+.+..
T Consensus       165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          165 TADLIVINKIDLADAVGADIKKMENDAKRI--NPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             TCSEEEEECGGGHHHHTCCHHHHHHHHHHH--CTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCEEEEeccccCchhHHHHHHHHHHHHHh--CCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            6899999999986532 1112222222211  134678999999999999999999887753

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.96  E-value=1.4e-09  Score=99.25  Aligned_cols=108  Identities=9%  Similarity=0.047  Sum_probs=64.6

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      .+..+.++||+|..   .-+....+.++.+++|+|.++.          .....   ....+      .+.|.++++||+
T Consensus       165 ~~~~~iliDT~Gi~---~~~~~l~~~~d~vl~V~d~~~~----------~~~~~---i~~~i------l~~~~ivVlNK~  222 (349)
T 2www_A          165 AGYDIILIETVGVG---QSEFAVADMVDMFVLLLPPAGG----------DELQG---IKRGI------IEMADLVAVTKS  222 (349)
T ss_dssp             TTCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC-------------------------------CCSCSEEEECCC
T ss_pred             CCCCEEEEECCCcc---hhhhhHHhhCCEEEEEEcCCcc----------hhHHH---hHHHH------HhcCCEEEEeee
Confidence            57889999999953   2244567899999999998862          11110   00111      235889999999


Q ss_pred             Ccccccc---cCCcccccCcCCC---CCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         249 DLFQEKI---TKSPLTVCFPEYT---DQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       249 Dl~~~k~---~~~~l~~~f~~~~---~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      |+....-   ....+...+....   ......++.+||++|+|+.+++++|.+.+.
T Consensus       223 Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          223 DGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             SGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            9864210   0111211111000   012346788999999999999999988763

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.92  E-value=3.3e-10  Score=105.57  Aligned_cols=106  Identities=14%  Similarity=0.207  Sum_probs=43.7

Q ss_pred             ceeeeEecCCCccccc---cc----------------------cccccCCc--EEEEEEecCCcccccccccccccHHHH
Q psy8318         171 LHFKMFDVGGQRSERK---KW----------------------IHCFEGVT--AIIFCVALSGYDSVLAEDEEMNRMIES  223 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~---~w----------------------~~~~~~~~--~iifv~dls~~d~~~~e~~~~~~l~e~  223 (313)
                      ..+++||++|+.....   .|                      ..++.++.  +++|+.+.+.           ..+...
T Consensus        88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-----------~~L~~~  156 (418)
T 2qag_C           88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-----------HGLKPL  156 (418)
T ss_dssp             EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-----------CSCCHH
T ss_pred             cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-----------cCCCHH
Confidence            4789999999865311   11                      22455544  5666665541           122222


Q ss_pred             -HHHHHHHHhCCCCCCCcEEEEeecCCccccc-ccC--CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         224 -MKLFDSICNSKWFMDTSIILFLNKNDLFQEK-ITK--SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       224 -~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k-~~~--~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                       ..++..+.     .++|+|+|+||+|+.... +..  ..+.+.+.    ..++.++++||++++++.++|..+.+.
T Consensus       157 d~~~lk~L~-----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~----~~~i~~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          157 DIEFMKRLH-----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQ----EHKIKIYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             HHHHHHHHT-----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHH----HHTCCCCCCC-----------------
T ss_pred             HHHHHHHHh-----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHH----HcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence             24555542     268999999999986432 111  12222221    135667889999999999888777654

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.88  E-value=8.7e-09  Score=94.01  Aligned_cols=37  Identities=16%  Similarity=0.192  Sum_probs=29.4

Q ss_pred             CceeeeEecCCCcccc-------ccccccccCCcEEEEEEecCC
Q psy8318         170 DLHFKMFDVGGQRSER-------KKWIHCFEGVTAIIFCVALSG  206 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r-------~~w~~~~~~~~~iifv~dls~  206 (313)
                      ...+++|||+|+....       ..+..++++++++++|+|+++
T Consensus        65 ~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           65 PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             CCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             eeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence            3679999999997642       234456899999999999987

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.85  E-value=3.6e-09  Score=102.15  Aligned_cols=68  Identities=19%  Similarity=0.134  Sum_probs=49.4

Q ss_pred             ceeeeEecCCCcc-----------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCC
Q psy8318         171 LHFKMFDVGGQRS-----------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDT  239 (313)
Q Consensus       171 ~~~~i~D~~Gq~~-----------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~  239 (313)
                      ..+.+|||+|...           +...+..++.+++++|||+|.++.          ....+...+++.+..    .+.
T Consensus       154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~----------~~~~~~~~~l~~l~~----~~~  219 (550)
T 2qpt_A          154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKL----------EISDEFSEAIGALRG----HED  219 (550)
T ss_dssp             HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSC----------CCCHHHHHHHHHTTT----CGG
T ss_pred             CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcC----------CCCHHHHHHHHHHHh----cCC
Confidence            4789999999864           445667788999999999999862          223334444444321    357


Q ss_pred             cEEEEeecCCccc
Q psy8318         240 SIILFLNKNDLFQ  252 (313)
Q Consensus       240 piilv~NK~Dl~~  252 (313)
                      |+++|+||+|+..
T Consensus       220 pvilVlNK~Dl~~  232 (550)
T 2qpt_A          220 KIRVVLNKADMVE  232 (550)
T ss_dssp             GEEEEEECGGGSC
T ss_pred             CEEEEEECCCccC
Confidence            9999999999864

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.79  E-value=7.3e-09  Score=94.95  Aligned_cols=37  Identities=16%  Similarity=0.263  Sum_probs=29.4

Q ss_pred             CceeeeEecCCCcccc-------ccccccccCCcEEEEEEecCC
Q psy8318         170 DLHFKMFDVGGQRSER-------KKWIHCFEGVTAIIFCVALSG  206 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r-------~~w~~~~~~~~~iifv~dls~  206 (313)
                      +..+++|||+|+....       ..+..+++.++++++|+|.++
T Consensus        68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            4679999999987542       234456899999999999986

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.79  E-value=9.3e-09  Score=93.54  Aligned_cols=109  Identities=13%  Similarity=0.137  Sum_probs=66.3

Q ss_pred             ecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeec
Q psy8318         168 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNK  247 (313)
Q Consensus       168 ~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK  247 (313)
                      .++..+.+|||+|......   .....+|++++|+|.+..+..       ..+..      ..      .+.|.++|+||
T Consensus       146 ~~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~-------~~l~~------~~------~~~p~ivv~NK  203 (341)
T 2p67_A          146 AAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDL-------QGIKK------GL------MEVADLIVINK  203 (341)
T ss_dssp             HTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC-------------CCCCH------HH------HHHCSEEEECC
T ss_pred             ccCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHH-------HHHHH------hh------hcccCEEEEEC
Confidence            3578999999999654322   245899999999999864321       00100      01      13588999999


Q ss_pred             CCccccc-ccC--CcccccCcCCC---CCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         248 NDLFQEK-ITK--SPLTVCFPEYT---DQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       248 ~Dl~~~k-~~~--~~l~~~f~~~~---~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      +|+.... ...  .++...+..+.   ......++++||++|+|+.+++++|.+.+.
T Consensus       204 ~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          204 DDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            9986531 111  12222111110   111346789999999999999999988764

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.70  E-value=6.9e-09  Score=101.98  Aligned_cols=83  Identities=17%  Similarity=0.175  Sum_probs=61.9

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .-|+-.....+.+++..++++||+|+..|..--...++-+|++|+|+|..+-           -...+...|+....   
T Consensus        52 GITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~G-----------V~~qT~~v~~~a~~---  117 (638)
T 3j25_A           52 GITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDG-----------VQAQTRILFHALRK---  117 (638)
T ss_dssp             SSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCT-----------TCSHHHHHHHHHHH---
T ss_pred             CCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCC-----------CcHHHHHHHHHHHH---
Confidence            3444444456677899999999999998887777778899999999999862           22334555555543   


Q ss_pred             CCCCcEEEEeecCCcccc
Q psy8318         236 FMDTSIILFLNKNDLFQE  253 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~  253 (313)
                       .+.|.++|.||+|....
T Consensus       118 -~~lp~i~~INKmDr~~a  134 (638)
T 3j25_A          118 -MGIPTIFFINKIDQNGI  134 (638)
T ss_dssp             -HTCSCEECCEECCSSSC
T ss_pred             -cCCCeEEEEeccccccC
Confidence             35799999999997654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.63  E-value=2.6e-08  Score=89.00  Aligned_cols=97  Identities=11%  Similarity=0.028  Sum_probs=67.5

Q ss_pred             CCccccccccccccCCcEEEEEEecCCcccccccccccc-cHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccc-c-
Q psy8318         180 GQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMN-RMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKI-T-  256 (313)
Q Consensus       180 Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~-~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~-~-  256 (313)
                      .+++++.+...+++++|++++|+|+++          +. ++.....|+..+-.    .++|++||+||+|+..+.. . 
T Consensus        65 i~er~~~l~r~~~~naD~vliV~d~~~----------p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~  130 (302)
T 2yv5_A           65 VEERKNLLIRPKVANVDRVIIVETLKM----------PEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKE  130 (302)
T ss_dssp             ECCCSCEEETTEEESCCEEEEEECSTT----------TTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHH
T ss_pred             eCChHHHHhHHHHHhcCEEEEEEECCC----------CCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHH
Confidence            478888888899999999999999997          32 44433344443322    4689999999999865321 1 


Q ss_pred             CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHH
Q psy8318         257 KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVT  294 (313)
Q Consensus       257 ~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~  294 (313)
                      ..+..+.+    ...+..++++||++|.|+++++..+.
T Consensus       131 ~~~~~~~~----~~~g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          131 LERWISIY----RDAGYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             HHHHHHHH----HHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred             HHHHHHHH----HHCCCeEEEEECCCCCCHHHHHhhcc
Confidence            11222221    11345789999999999999998765

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.55  E-value=2.2e-07  Score=92.19  Aligned_cols=109  Identities=13%  Similarity=0.108  Sum_probs=66.9

Q ss_pred             CceeeeEecCCCccc---------cccc----cccc-cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         170 DLHFKMFDVGGQRSE---------RKKW----IHCF-EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~---------r~~w----~~~~-~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      ...+.++||+|-..-         ...|    ..|. ..++.+++|+|.+.          .-.-.+...+...+..   
T Consensus       149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~----------~~~~~d~l~ll~~L~~---  215 (772)
T 3zvr_A          149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS----------DLANSDALKIAKEVDP---  215 (772)
T ss_dssp             CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTS----------CSSSCHHHHHHHHHCT---
T ss_pred             CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCC----------CcchhHHHHHHHHHHh---
Confidence            457999999995431         1223    2333 57899999999886          2222233344444422   


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccc--cCcCCCCCCC-eEEEEeecccCcCHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTV--CFPEYTDQKE-IYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~--~f~~~~~~~~-~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                       .+.|+++|+||+|+..+.-....+..  .++   ...+ ..++.+||++|.|+.++++.+.+
T Consensus       216 -~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~---l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          216 -QGQRTIGVITKLDLMDEGTDARDVLENKLLP---LRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             -TCSSEEEEEECTTSSCTTCCSHHHHTTCSSC---CSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             -cCCCEEEEEeCcccCCcchhhHHHHHHHhhh---hhccCCceEEecccccccchhHHHHHHH
Confidence             36899999999998653211111111  111   1112 35678999999999998888876

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.52  E-value=1.2e-08  Score=93.76  Aligned_cols=100  Identities=11%  Similarity=0.050  Sum_probs=66.7

Q ss_pred             CCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCc
Q psy8318         180 GQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSP  259 (313)
Q Consensus       180 Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~  259 (313)
                      .++.+++.+.+++++++++++|+|+++++            ..+...+.+.+     .+.|+++|+||+|+..+......
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------------~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~  117 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------------GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDK  117 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH------------HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc------------ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHH
Confidence            56789999999999999999999999832            11112223322     36899999999998654322112


Q ss_pred             cccc----CcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         260 LTVC----FPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       260 l~~~----f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +.+.    +... ..+...++.+||++|.|+.++++++.+..
T Consensus       118 ~~~~l~~~~~~~-g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          118 VKHWMRYSAKQL-GLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHHHHHHHHHT-TCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            2221    1111 11122688999999999999999987643

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.41  E-value=4.6e-07  Score=82.14  Aligned_cols=109  Identities=9%  Similarity=0.016  Sum_probs=62.3

Q ss_pred             ecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeec
Q psy8318         168 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNK  247 (313)
Q Consensus       168 ~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK  247 (313)
                      ..+..+.++||+|...-   .....+.++.+++|+|.+..+          .+..    +    . ....+.|.++++||
T Consensus       145 ~~~~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~----------~~~~----i----~-~~i~~~~~ivvlNK  202 (337)
T 2qm8_A          145 AAGFDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGD----------ELQG----I----K-KGIFELADMIAVNK  202 (337)
T ss_dssp             HTTCCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC--------------------C----C-TTHHHHCSEEEEEC
T ss_pred             cCCCCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcc----------cHHH----H----H-HHHhccccEEEEEc
Confidence            36789999999997432   123457899999999986421          1000    0    0 00012356777899


Q ss_pred             CCccc-cccc---CCcccccCcCCCC---CCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         248 NDLFQ-EKIT---KSPLTVCFPEYTD---QKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       248 ~Dl~~-~k~~---~~~l~~~f~~~~~---~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      .|+.. ....   ...+...+.....   .....++.+||+++.|+.++++.|.+...
T Consensus       203 ~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          203 ADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             CSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             hhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            99642 1111   1111111111100   01224677999999999999999988653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.39  E-value=1.2e-07  Score=87.10  Aligned_cols=101  Identities=14%  Similarity=0.125  Sum_probs=67.0

Q ss_pred             CCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCC
Q psy8318         179 GGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKS  258 (313)
Q Consensus       179 ~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~  258 (313)
                      ..|+.+++.+.+++++++++++|+|+++++...     ...+       ...+     .+.|+++|+||+|+..+.....
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~-----~~~l-------~~~l-----~~~piilV~NK~DLl~~~~~~~  118 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNGSF-----IPGL-------PRFA-----ADNPILLVGNKADLLPRSVKYP  118 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGGGC-----CSSH-------HHHC-----TTSCEEEEEECGGGSCTTCCHH
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCCch-----hhHH-------HHHh-----CCCCEEEEEEChhcCCCccCHH
Confidence            468899999999999999999999999965211     1111       2221     3689999999999875432222


Q ss_pred             ccccc----CcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         259 PLTVC----FPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       259 ~l~~~----f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      .+.+.    +... ..+...++.+||++|.|+.++++.+.+..
T Consensus       119 ~~~~~l~~~~~~~-g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          119 KLLRWMRRMAEEL-GLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HHHHHHHHHHHTT-TCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            22222    2211 11123688999999999999999987654

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.37  E-value=6.3e-07  Score=82.54  Aligned_cols=37  Identities=8%  Similarity=0.143  Sum_probs=25.7

Q ss_pred             ceeeeEecCCCccccc-------cccccccCCcEEEEEEecCCc
Q psy8318         171 LHFKMFDVGGQRSERK-------KWIHCFEGVTAIIFCVALSGY  207 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~-------~w~~~~~~~~~iifv~dls~~  207 (313)
                      ..+++||++|+...+.       .|..++++++++++|+|+++-
T Consensus        86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A           86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            5689999999876443       678889999999999999863

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.31  E-value=2e-06  Score=85.60  Aligned_cols=69  Identities=10%  Similarity=0.107  Sum_probs=54.9

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      ++.++++||+|+..|..--...++-+|++|+|+|..+           --...+...|+....    .+.|.++|.||+|
T Consensus        84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDave-----------GV~~qT~~v~~~a~~----~~lp~i~~iNKiD  148 (709)
T 4fn5_A           84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTS-----------GVEPQSETVWRQANK----YGVPRIVYVNKMD  148 (709)
T ss_dssp             CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTT-----------CSCHHHHHHHHHHHH----HTCCEEEEEECSS
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCC-----------CCchhHHHHHHHHHH----cCCCeEEEEcccc
Confidence            5789999999999887766667888999999999996           333455666776654    3689999999999


Q ss_pred             cccc
Q psy8318         250 LFQE  253 (313)
Q Consensus       250 l~~~  253 (313)
                      ....
T Consensus       149 r~~a  152 (709)
T 4fn5_A          149 RQGA  152 (709)
T ss_dssp             STTC
T ss_pred             ccCc
Confidence            7653

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=98.10  E-value=5.3e-06  Score=75.99  Aligned_cols=77  Identities=10%  Similarity=0.098  Sum_probs=48.7

Q ss_pred             EEEEEecCceeeeEecCCCcccc-------ccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh-CC
Q psy8318         163 ETHFTFKDLHFKMFDVGGQRSER-------KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN-SK  234 (313)
Q Consensus       163 ~~~~~~~~~~~~i~D~~Gq~~~r-------~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~-~~  234 (313)
                      ...+.+.+.++++.||+|-..-.       +......+.||++++|+|.++          +-+  +...+..++.. ..
T Consensus       111 ~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~----------p~~--~~~~i~~EL~~~~~  178 (376)
T 4a9a_A          111 PGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNK----------PLH--HKQIIEKELEGVGI  178 (376)
T ss_dssp             EEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTS----------HHH--HHHHHHHHHHHTTE
T ss_pred             eEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCc----------cHH--HHHHHHHHHHHhhH
Confidence            34456788999999999964321       122344678999999999986          221  11112222211 23


Q ss_pred             CCCCCcEEEEeecCCcc
Q psy8318         235 WFMDTSIILFLNKNDLF  251 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~  251 (313)
                      .+.+.|.++++||.|..
T Consensus       179 ~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          179 RLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             EETCCCCCEEEEECSSS
T ss_pred             hhccCChhhhhhHhhhh
Confidence            34567889999999964

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.89  E-value=1e-05  Score=76.92  Aligned_cols=108  Identities=12%  Similarity=0.164  Sum_probs=60.1

Q ss_pred             cCceeeeEecCCCcccc-cccccc-----ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE-
Q psy8318         169 KDLHFKMFDVGGQRSER-KKWIHC-----FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI-  241 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r-~~w~~~-----~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi-  241 (313)
                      .+..+.|+||+|..... ..+...     ...++.+++|+|.+.          ...   +......+..     ..|+ 
T Consensus       182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~----------g~~---~~~~a~~~~~-----~~~i~  243 (504)
T 2j37_W          182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASI----------GQA---CEAQAKAFKD-----KVDVA  243 (504)
T ss_dssp             TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTC----------CTT---HHHHHHHHHH-----HHCCC
T ss_pred             CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccc----------ccc---HHHHHHHHHh-----hcCce
Confidence            56789999999975422 222211     226899999999986          111   2222222211     1465 


Q ss_pred             EEEeecCCccccc---cc-----CCcc-----cccCcCCCCCCCeEEEEeecccCcC-HHHHHHHHHHH
Q psy8318         242 ILFLNKNDLFQEK---IT-----KSPL-----TVCFPEYTDQKEIYTHFTCATDTSN-IQFVFDAVTDV  296 (313)
Q Consensus       242 ilv~NK~Dl~~~k---~~-----~~~l-----~~~f~~~~~~~~~~~~~tSA~~~~~-v~~~f~~i~~~  296 (313)
                      .+|+||.|.....   +.     ..++     .+.+.++..  .-...++||..|.| +.++++++.+.
T Consensus       244 gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~--f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          244 SVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEP--FKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEEC--CTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             EEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhc--cCcceeeehhcCCCcHHHHHHHHHHH
Confidence            8899999975321   00     0011     111111100  00124579999999 99998888765

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.68  E-value=6.5e-05  Score=69.16  Aligned_cols=36  Identities=19%  Similarity=0.284  Sum_probs=28.1

Q ss_pred             ceeeeEecCCCcc-------ccccccccccCCcEEEEEEecCC
Q psy8318         171 LHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSG  206 (313)
Q Consensus       171 ~~~~i~D~~Gq~~-------~r~~w~~~~~~~~~iifv~dls~  206 (313)
                      ..+.+||++|...       ....+..++++++++++|+|+++
T Consensus        85 ~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           85 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3578999999532       34466777899999999999976

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.65  E-value=1.5e-05  Score=70.24  Aligned_cols=101  Identities=12%  Similarity=0.127  Sum_probs=64.3

Q ss_pred             ecCCCc-cccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccc
Q psy8318         177 DVGGQR-SERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKI  255 (313)
Q Consensus       177 D~~Gq~-~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~  255 (313)
                      ..+|+. ..++.....++.+++|++|+|..+          +.....  ..+++++     .+.|.++++||+|+.....
T Consensus         5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~----------p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~   67 (282)
T 1puj_A            5 WFPGHMAKARREVTEKLKLIDIVYELVDARI----------PMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAV   67 (282)
T ss_dssp             ----CTTHHHHHHHHHGGGCSEEEEEEETTS----------TTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHH
T ss_pred             CCchHHHHHHHHHHHHHhhCCEEEEEEeCCC----------CCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHH
Confidence            456664 444555667899999999999987          222111  1223332     4689999999999875311


Q ss_pred             cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         256 TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       256 ~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                       .....+++.    ..++.++++||+++.|+.++++.+.+.+..
T Consensus        68 -~~~~~~~~~----~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           68 -TQQWKEHFE----NQGIRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             -HHHHHHHHH----TTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             -HHHHHHHHH----hcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence             111222332    134568899999999999999998877654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.96  E-value=0.00033  Score=57.31  Aligned_cols=30  Identities=40%  Similarity=0.405  Sum_probs=20.1

Q ss_pred             CcchhhhhccceEEEEcCCCCchhHHHHHHH
Q psy8318           1 MPMVQWQEREVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus         1 ~~~~~~~~~~~killlG~~~sGKst~~kq~r   31 (313)
                      |+|.+-.++. .++++|.+||||||+++.+-
T Consensus         1 ~~m~~i~~g~-~i~l~G~~GsGKSTl~~~La   30 (191)
T 1zp6_A            1 MNMTDDLGGN-ILLLSGHPGSGKSTIAEALA   30 (191)
T ss_dssp             -----CCTTE-EEEEEECTTSCHHHHHHHHH
T ss_pred             CCccCCCCCe-EEEEECCCCCCHHHHHHHHH
Confidence            5555543333 58999999999999999873

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.96  E-value=0.0016  Score=60.73  Aligned_cols=22  Identities=36%  Similarity=0.551  Sum_probs=19.2

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      ..-|+++|.+||||||++..+-
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA  121 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLA  121 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHH
Confidence            5678999999999999988873

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.95  E-value=0.00022  Score=67.37  Aligned_cols=36  Identities=11%  Similarity=0.094  Sum_probs=27.6

Q ss_pred             ceeeeEecCCC--ccccccc--------cccccCCcEEEEEEecCC
Q psy8318         171 LHFKMFDVGGQ--RSERKKW--------IHCFEGVTAIIFCVALSG  206 (313)
Q Consensus       171 ~~~~i~D~~Gq--~~~r~~w--------~~~~~~~~~iifv~dls~  206 (313)
                      ....+||..|+  ...+..|        ..++.++.+.++|+|.++
T Consensus        87 ~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn  132 (469)
T 1bif_A           87 KSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATN  132 (469)
T ss_dssp             CCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCC
T ss_pred             CcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            34578999998  3456666        667777888899999986

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.76  E-value=0.0063  Score=56.67  Aligned_cols=65  Identities=15%  Similarity=0.109  Sum_probs=39.4

Q ss_pred             cCceeeeEecCCCccccc-cc-----cccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCC-c-
Q psy8318         169 KDLHFKMFDVGGQRSERK-KW-----IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDT-S-  240 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~-~w-----~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~-p-  240 (313)
                      .+..+.++||+|...... +.     ......++.++||+|.+.          ..   ++......+ +.    .. | 
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~----------g~---~~~~~~~~~-~~----~~~~i  240 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTI----------GQ---QAGIQAKAF-KE----AVGEI  240 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGG----------GG---GHHHHHHHH-HT----TSCSC
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccc----------cH---HHHHHHHHH-hh----cccCC
Confidence            457889999999754211 11     111236899999999875          21   223333222 21    23 5 


Q ss_pred             EEEEeecCCcc
Q psy8318         241 IILFLNKNDLF  251 (313)
Q Consensus       241 iilv~NK~Dl~  251 (313)
                      ..+|+||.|..
T Consensus       241 ~gvVlnK~D~~  251 (432)
T 2v3c_C          241 GSIIVTKLDGS  251 (432)
T ss_dssp             EEEEEECSSSC
T ss_pred             eEEEEeCCCCc
Confidence            78999999964

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.53  E-value=0.0033  Score=58.52  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=18.8

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      ..-|+++|.+||||||++..+-
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA  118 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLA  118 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4567899999999999998874

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.45  E-value=0.0014  Score=53.34  Aligned_cols=20  Identities=35%  Similarity=0.650  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      ++.++|.+||||||+++.+-
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~   21 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIV   21 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            78999999999999999863

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.43  E-value=0.0013  Score=52.64  Aligned_cols=24  Identities=33%  Similarity=0.463  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHhc
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~~   35 (313)
                      .|+++|.+||||||+.+.+.-..+
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999854443

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.31  E-value=0.0016  Score=52.48  Aligned_cols=18  Identities=44%  Similarity=0.706  Sum_probs=16.6

Q ss_pred             eEEEEcCCCCchhHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQ   29 (313)
Q Consensus        12 killlG~~~sGKst~~kq   29 (313)
                      -++++|.+||||||+++.
T Consensus        11 i~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             EEEEECCTTSCHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHH
Confidence            478999999999999997

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.30  E-value=0.00027  Score=61.50  Aligned_cols=85  Identities=14%  Similarity=0.076  Sum_probs=53.4

Q ss_pred             ccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCc
Q psy8318         186 KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFP  265 (313)
Q Consensus       186 ~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~  265 (313)
                      +........+|+||.|+|+.+-          ......  .++ +     . +.|.++++||+|+..... .....+++.
T Consensus        13 ~~~~~~l~~~D~vl~VvDar~P----------~~~~~~--~l~-l-----l-~k~~iivlNK~DL~~~~~-~~~~~~~~~   72 (262)
T 3cnl_A           13 RQIKDLLRLVNTVVEVRDARAP----------FATSAY--GVD-F-----S-RKETIILLNKVDIADEKT-TKKWVEFFK   72 (262)
T ss_dssp             HHHHHHHTTCSEEEEEEETTST----------TTTSCT--TSC-C-----T-TSEEEEEEECGGGSCHHH-HHHHHHHHH
T ss_pred             HHHHHHHhhCCEEEEEeeCCCC----------CcCcCh--HHH-h-----c-CCCcEEEEECccCCCHHH-HHHHHHHHH
Confidence            3445567899999999999862          111100  001 1     1 689999999999875321 112222332


Q ss_pred             CCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         266 EYTDQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       266 ~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      .    .+..+ .+||+++.|+.++++++.+
T Consensus        73 ~----~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           73 K----QGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             H----TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             H----cCCeE-EEECCCCcCHHHHHHHHHH
Confidence            1    23346 8999999999998877654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.26  E-value=0.002  Score=51.81  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~   34 (313)
                      ..++++|.+||||||+.+.+.-..
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhh
Confidence            468999999999999999975433

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.23  E-value=0.0021  Score=52.17  Aligned_cols=22  Identities=32%  Similarity=0.449  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCchhHHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~   33 (313)
                      -++++|++||||||+++.+.-.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5789999999999999997543

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.14  E-value=0.0032  Score=52.03  Aligned_cols=23  Identities=35%  Similarity=0.540  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      .++++|++||||||+++.+--++
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            78999999999999999985444

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.13  E-value=0.0025  Score=52.45  Aligned_cols=22  Identities=14%  Similarity=0.374  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCchhHHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~   33 (313)
                      -+.++|++||||||+++.+.-+
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5789999999999999987433

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.07  E-value=0.0029  Score=50.32  Aligned_cols=19  Identities=37%  Similarity=0.522  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      -|++.|.+||||||+.+.+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5889999999999999998

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.03  E-value=0.0032  Score=52.46  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.5

Q ss_pred             ceEEEEcCCCCchhHHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~   32 (313)
                      ++|++.|.+||||||+.+.+.-
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999843

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.03  E-value=0.0031  Score=50.23  Aligned_cols=22  Identities=23%  Similarity=0.212  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCchhHHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~   33 (313)
                      .|++.|.+||||||+.+.+.-.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998533

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.02  E-value=0.0031  Score=50.62  Aligned_cols=21  Identities=33%  Similarity=0.461  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCchhHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~   32 (313)
                      -|++.|.+||||||+.+.+.-
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHh
Confidence            589999999999999999753

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.98  E-value=0.0034  Score=52.21  Aligned_cols=26  Identities=31%  Similarity=0.295  Sum_probs=21.4

Q ss_pred             ccceEEEEcCCCCchhHHHHHHHHHh
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r~~~   34 (313)
                      ....|.++|.+|||||||++.+--++
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            44578899999999999999985444

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.98  E-value=0.0035  Score=52.27  Aligned_cols=21  Identities=29%  Similarity=0.479  Sum_probs=19.0

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      ++|++.|.+||||||+.+.+.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIV   21 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999999984

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.97  E-value=0.0034  Score=51.13  Aligned_cols=20  Identities=30%  Similarity=0.481  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -++++|.+||||||+++.+.
T Consensus         4 ii~l~G~~GaGKSTl~~~L~   23 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLA   23 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHh
Confidence            46899999999999999974

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=95.97  E-value=0.00073  Score=60.05  Aligned_cols=88  Identities=13%  Similarity=0.045  Sum_probs=51.3

Q ss_pred             cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccc---cCCccccc
Q psy8318         187 KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKI---TKSPLTVC  263 (313)
Q Consensus       187 ~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~---~~~~l~~~  263 (313)
                      ++.....++|.+++|+|+.+-+         .+..    .++.++..-...++|.+||+||+|+.....   ....+.+.
T Consensus        79 l~R~~~anvD~v~~V~~~~~p~---------~~~~----~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~  145 (307)
T 1t9h_A           79 LIRPPICNVDQAVLVFSAVQPS---------FSTA----LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAED  145 (307)
T ss_dssp             ETTTTEECCCEEEEEEESTTTT---------CCHH----HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred             hhHHHHHhCCEEEEEEeCCCCC---------CCHH----HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHH
Confidence            4445678999999999998511         1111    222222111114678999999999876421   01222333


Q ss_pred             CcCCCCCCCeEEEEeecccCcCHHHHHH
Q psy8318         264 FPEYTDQKEIYTHFTCATDTSNIQFVFD  291 (313)
Q Consensus       264 f~~~~~~~~~~~~~tSA~~~~~v~~~f~  291 (313)
                      +.    ..+..++.+||.++.|+.+++.
T Consensus       146 y~----~~g~~v~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          146 YR----NIGYDVYLTSSKDQDSLADIIP  169 (307)
T ss_dssp             HH----HHTCCEEECCHHHHTTCTTTGG
T ss_pred             HH----hCCCeEEEEecCCCCCHHHHHh
Confidence            21    1234678899998888766554

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.95  E-value=0.0037  Score=52.33  Aligned_cols=26  Identities=19%  Similarity=0.431  Sum_probs=21.8

Q ss_pred             ccceEEEEcCCCCchhHHHHHHHHHh
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r~~~   34 (313)
                      +...|++.|.+||||||+.+.+.-.+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            45689999999999999999985433

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.92  E-value=0.004  Score=51.61  Aligned_cols=24  Identities=29%  Similarity=0.421  Sum_probs=20.8

Q ss_pred             ccceEEEEcCCCCchhHHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r~   32 (313)
                      +...|++.|.+||||||+.+.+.-
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999854

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.92  E-value=0.0039  Score=50.47  Aligned_cols=23  Identities=22%  Similarity=0.385  Sum_probs=20.0

Q ss_pred             cceEEEEcCCCCchhHHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~   32 (313)
                      ...|++.|.+||||||+.+.+.-
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999999853

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.91  E-value=0.0053  Score=50.02  Aligned_cols=27  Identities=19%  Similarity=0.284  Sum_probs=22.1

Q ss_pred             hccceEEEEcCCCCchhHHHHHHHHHh
Q psy8318           8 EREVKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus         8 ~~~~killlG~~~sGKst~~kq~r~~~   34 (313)
                      .+...|++.|.+||||||+.+.+.-.+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            345679999999999999999985433

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.90  E-value=0.0038  Score=50.77  Aligned_cols=25  Identities=16%  Similarity=0.462  Sum_probs=21.1

Q ss_pred             ccceEEEEcCCCCchhHHHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r~~   33 (313)
                      +...|++.|.+||||||+.+.+.-.
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3457999999999999999998543

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.88  E-value=0.0052  Score=51.25  Aligned_cols=25  Identities=28%  Similarity=0.400  Sum_probs=20.9

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~~   35 (313)
                      +.|+++|++||||+|..+.+---|+
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Confidence            3689999999999999999854443

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=95.88  E-value=0.0039  Score=51.35  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.1

Q ss_pred             ceEEEEcCCCCchhHHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~   32 (313)
                      ..++++|++||||||+++.+.-
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~   28 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFE   28 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999999753

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.88  E-value=0.0037  Score=54.43  Aligned_cols=22  Identities=27%  Similarity=0.572  Sum_probs=19.4

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      .+++.++|.+|||||||++-+-
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~   23 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLF   23 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHh
Confidence            3689999999999999999864

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=95.87  E-value=0.0044  Score=49.78  Aligned_cols=23  Identities=30%  Similarity=0.527  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      -|++.|.+||||||+.+.+.-..
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            58999999999999999985433

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=95.86  E-value=0.004  Score=51.38  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=19.9

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~   34 (313)
                      --|+++|.+||||||+++.+.-..
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhh
Confidence            468899999999999999984333

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.86  E-value=0.0042  Score=49.51  Aligned_cols=20  Identities=30%  Similarity=0.403  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+.++|+.|||||||+|-+-
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~   54 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGML   54 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999873

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.85  E-value=0.0042  Score=51.41  Aligned_cols=24  Identities=29%  Similarity=0.285  Sum_probs=21.0

Q ss_pred             ccceEEEEcCCCCchhHHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r~   32 (313)
                      +...|++.|.+||||||+.+.+.-
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            456799999999999999999864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.82  E-value=0.0043  Score=51.52  Aligned_cols=20  Identities=35%  Similarity=0.615  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+.++|.+||||||+++.+-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~   41 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLR   41 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47799999999999999874

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.82  E-value=0.0045  Score=50.75  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCchhHHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~   33 (313)
                      .|++.|.+||||||+.+.+.-.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            6899999999999999998543

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.82  E-value=0.0043  Score=52.93  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=19.4

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      ...++++|.+||||||+++.+-
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3479999999999999999974

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.79  E-value=0.0045  Score=51.04  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=20.2

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~   34 (313)
                      ..|++.|.+||||||+.+.+.-.+
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999985443

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.79  E-value=0.0044  Score=52.01  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      .+.++|++||||||+++.+--++
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            57899999999999999874433

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.78  E-value=0.0044  Score=52.19  Aligned_cols=22  Identities=14%  Similarity=0.314  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCchhHHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~   33 (313)
                      -++++|++|||||||++.+.-.
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5789999999999999987543

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.77  E-value=0.0045  Score=51.20  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=19.1

Q ss_pred             ceEEEEcCCCCchhHHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~   32 (313)
                      .-|+++|.+||||||+.+.+.-
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999999753

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.77  E-value=0.0063  Score=50.42  Aligned_cols=27  Identities=19%  Similarity=0.292  Sum_probs=21.9

Q ss_pred             ccceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r~~~~   35 (313)
                      ....|.++|++||||||+++.+.-+++
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            344688999999999999999865544

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.72  E-value=0.0057  Score=50.84  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      -++++|++||||||+++.+.-.+
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHST
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            47899999999999999985443

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.71  E-value=0.0055  Score=50.26  Aligned_cols=20  Identities=30%  Similarity=0.597  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchhHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~   32 (313)
                      |++.|++|||||||++.+.-
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            79999999999999999753

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=95.71  E-value=0.0051  Score=50.68  Aligned_cols=21  Identities=29%  Similarity=0.393  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCchhHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~   32 (313)
                      +|.+.|.+||||||+.+.+.-
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999865

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.70  E-value=0.0052  Score=49.82  Aligned_cols=22  Identities=32%  Similarity=0.392  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCchhHHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~   33 (313)
                      .|++.|.+||||||+.+.+.--
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998543

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=95.70  E-value=0.0066  Score=49.99  Aligned_cols=27  Identities=26%  Similarity=0.313  Sum_probs=21.5

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHhcCC
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIHETG   37 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~~~~   37 (313)
                      -.|+++|.+||||||+.+.+.-..+-.
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~~l~~~   52 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFARKLNVP   52 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            378999999999999999985444433

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=95.69  E-value=0.0053  Score=50.35  Aligned_cols=27  Identities=22%  Similarity=0.283  Sum_probs=21.9

Q ss_pred             hhccceEEEEcCCCCchhHHHHHHHHH
Q psy8318           7 QEREVKLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus         7 ~~~~~killlG~~~sGKst~~kq~r~~   33 (313)
                      ..+...|.+.|.+||||||+.+.+.-.
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            344567999999999999999998644

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.66  E-value=0.007  Score=51.67  Aligned_cols=27  Identities=33%  Similarity=0.452  Sum_probs=22.5

Q ss_pred             hccceEEEEcCCCCchhHHHHHHHHHh
Q psy8318           8 EREVKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus         8 ~~~~killlG~~~sGKst~~kq~r~~~   34 (313)
                      .+..+|++.|++||||||+.+.+.--+
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999985333

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=95.65  E-value=0.0052  Score=51.40  Aligned_cols=20  Identities=20%  Similarity=0.295  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+.++|.+|||||||++++-
T Consensus        27 ~~~l~G~nGsGKSTll~~l~   46 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLA   46 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999984

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.65  E-value=0.0058  Score=49.64  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=19.8

Q ss_pred             cceEEEEcCCCCchhHHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~   32 (313)
                      ...|++.|.+||||||+.+.+.-
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999753

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.65  E-value=0.0071  Score=48.90  Aligned_cols=24  Identities=38%  Similarity=0.432  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHhc
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~~   35 (313)
                      .|++.|.+||||||+.+.+.-..+
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcC
Confidence            689999999999999999865443

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.64  E-value=0.0071  Score=50.38  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~   34 (313)
                      ++|++.|.+||||||+.+.+.--+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            378999999999999999985433

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.64  E-value=0.0064  Score=48.30  Aligned_cols=23  Identities=30%  Similarity=0.319  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      +|++.|.+||||||+.+.+.-..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999986533

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.63  E-value=0.0055  Score=52.19  Aligned_cols=19  Identities=32%  Similarity=0.543  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|++|||||||++-+
T Consensus        33 ~~~iiG~nGsGKSTLl~~l   51 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNII   51 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHH
Confidence            5789999999999998876

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.63  E-value=0.0075  Score=49.23  Aligned_cols=27  Identities=19%  Similarity=0.263  Sum_probs=22.1

Q ss_pred             hccceEEEEcCCCCchhHHHHHHHHHh
Q psy8318           8 EREVKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus         8 ~~~~killlG~~~sGKst~~kq~r~~~   34 (313)
                      .....|++.|.+||||||+.+.+.-.+
T Consensus        10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            345679999999999999999985443

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.62  E-value=0.0074  Score=50.48  Aligned_cols=24  Identities=25%  Similarity=0.299  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~   34 (313)
                      ..|.++|.+||||||+.+.+.-.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999985444

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=95.62  E-value=0.0057  Score=50.42  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=19.1

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      ..-|.++|.+||||||+.+.+-
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La   46 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALN   46 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3468899999999999999984

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.62  E-value=0.006  Score=49.58  Aligned_cols=23  Identities=17%  Similarity=0.407  Sum_probs=19.9

Q ss_pred             cceEEEEcCCCCchhHHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~   32 (313)
                      ..-|++.|.+||||||+.+.+.-
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999854

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.60  E-value=0.0062  Score=49.25  Aligned_cols=23  Identities=22%  Similarity=0.447  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      .|++.|.+||||||+.+.+.--.
T Consensus         7 ~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            7 NIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999984433

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.60  E-value=0.006  Score=49.00  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      +|++.|.+||||||+.+.+.-..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            68999999999999999985433

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=95.58  E-value=0.0063  Score=49.27  Aligned_cols=22  Identities=14%  Similarity=0.092  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCCchhHHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~   32 (313)
                      ..|++.|.+||||||+.+.+.-
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999865

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.54  E-value=0.0085  Score=49.26  Aligned_cols=28  Identities=25%  Similarity=0.343  Sum_probs=22.8

Q ss_pred             hccceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318           8 EREVKLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus         8 ~~~~killlG~~~sGKst~~kq~r~~~~   35 (313)
                      ...+.|++.|.+||||||+.+.+.--++
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l~   45 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG   45 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3456899999999999999999854433

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.52  E-value=0.0073  Score=49.76  Aligned_cols=24  Identities=29%  Similarity=0.268  Sum_probs=20.6

Q ss_pred             cceEEEEcCCCCchhHHHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~~   33 (313)
                      ...|++.|.+||||||+.+.+.--
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            347899999999999999998543

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.50  E-value=0.0069  Score=51.22  Aligned_cols=28  Identities=25%  Similarity=0.371  Sum_probs=22.3

Q ss_pred             hhccceEEEEcCCCCchhHHHHHHHHHh
Q psy8318           7 QEREVKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus         7 ~~~~~killlG~~~sGKst~~kq~r~~~   34 (313)
                      ......|++.|.+||||||+.+.+.--+
T Consensus        13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           13 SPKGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3445689999999999999999985433

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.49  E-value=0.0064  Score=51.37  Aligned_cols=19  Identities=37%  Similarity=0.539  Sum_probs=16.9

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||+|-+
T Consensus        32 ~~~iiG~nGsGKSTLl~~l   50 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYIL   50 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4679999999999998876

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.45  E-value=0.0071  Score=50.85  Aligned_cols=23  Identities=26%  Similarity=0.510  Sum_probs=20.2

Q ss_pred             cceEEEEcCCCCchhHHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~   32 (313)
                      ...|++.|.+||||||+.+.+.-
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999853

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=95.44  E-value=0.0076  Score=49.75  Aligned_cols=21  Identities=33%  Similarity=0.272  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCchhHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~   32 (313)
                      .|.++|.+||||||+.+.+.-
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999854

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.42  E-value=0.0073  Score=50.67  Aligned_cols=19  Identities=26%  Similarity=0.457  Sum_probs=17.1

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||+|-+
T Consensus        37 ~~~iiG~NGsGKSTLlk~l   55 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTI   55 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999998875

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.41  E-value=0.0071  Score=50.49  Aligned_cols=20  Identities=25%  Similarity=0.318  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+.++|.+|||||||++-+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~   43 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKA   43 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            57899999999999999864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.41  E-value=0.0085  Score=50.06  Aligned_cols=25  Identities=36%  Similarity=0.408  Sum_probs=21.1

Q ss_pred             cceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~~~   34 (313)
                      .+.|++.|.+||||||+.+.+.--+
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999985433

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.40  E-value=0.0073  Score=51.59  Aligned_cols=19  Identities=32%  Similarity=0.513  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|++|||||||+|-+
T Consensus        26 ~~~liG~nGsGKSTLl~~l   44 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELI   44 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5679999999999999886

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=95.39  E-value=0.0067  Score=48.96  Aligned_cols=21  Identities=19%  Similarity=0.276  Sum_probs=18.6

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      -.++++|++|+||||+++.+-
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~   59 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATL   59 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            458999999999999999873

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.37  E-value=0.0088  Score=49.06  Aligned_cols=24  Identities=21%  Similarity=0.248  Sum_probs=20.6

Q ss_pred             cceEEEEcCCCCchhHHHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~~   33 (313)
                      ...|++.|.+||||||+.+.+.-.
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            457999999999999999998543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.37  E-value=0.011  Score=53.47  Aligned_cols=54  Identities=13%  Similarity=0.153  Sum_probs=34.5

Q ss_pred             CCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHH
Q psy8318         238 DTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAV  293 (313)
Q Consensus       238 ~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i  293 (313)
                      ++|.+||+||+|+..... ...+......| ...+..++.+||.++.|+.++...+
T Consensus       160 ~~~~iivlNK~DL~~~~~-~~~~~~~~~~y-~~~G~~v~~~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          160 QVEPLIVLNKIDLLDDEG-MDFVNEQMDIY-RNIGYRVLMVSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             TCEEEEEEECGGGCCHHH-HHHHHHHHHHH-HTTTCCEEECBTTTTBTHHHHHHHH
T ss_pred             CCCEEEEEECccCCCchh-HHHHHHHHHHH-HhCCCcEEEEecCCCcCHHHHHHhc
Confidence            568899999999876421 01111122222 2345568999999999998876543

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.36  E-value=0.008  Score=48.43  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=19.8

Q ss_pred             cceEEEEcCCCCchhHHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~   32 (313)
                      ...|++.|.+||||||+.+.+.-
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            34689999999999999999743

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.36  E-value=0.009  Score=48.46  Aligned_cols=21  Identities=29%  Similarity=0.330  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCchhHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~   32 (313)
                      .|++.|.+||||||+.+.+.-
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999854

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.35  E-value=0.0083  Score=51.13  Aligned_cols=19  Identities=21%  Similarity=0.445  Sum_probs=17.3

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||+|-+
T Consensus        33 ~~~i~G~nGsGKSTLl~~l   51 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSAL   51 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999886

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=95.34  E-value=0.008  Score=50.32  Aligned_cols=25  Identities=32%  Similarity=0.409  Sum_probs=21.0

Q ss_pred             cceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~~~   34 (313)
                      ...|++.|.+||||||+.+.+.--+
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999985433

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.34  E-value=0.0078  Score=52.55  Aligned_cols=19  Identities=32%  Similarity=0.518  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|++|||||||+|-+
T Consensus        36 ~~~iiGpnGsGKSTLl~~l   54 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNF   54 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4689999999999999886

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.31  E-value=0.0086  Score=51.37  Aligned_cols=19  Identities=37%  Similarity=0.536  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||+|-+
T Consensus        37 ~~~i~G~nGsGKSTLl~~l   55 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLI   55 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999886

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.28  E-value=0.0085  Score=51.15  Aligned_cols=19  Identities=32%  Similarity=0.567  Sum_probs=17.1

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||+|-+
T Consensus        34 ~~~l~G~nGsGKSTLl~~l   52 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAI   52 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5779999999999998876

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.27  E-value=0.0085  Score=51.69  Aligned_cols=19  Identities=37%  Similarity=0.658  Sum_probs=17.1

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||+|-+
T Consensus        35 ~~~liG~nGsGKSTLlk~l   53 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVI   53 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4779999999999998886

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.27  E-value=0.0089  Score=49.14  Aligned_cols=23  Identities=22%  Similarity=0.354  Sum_probs=19.7

Q ss_pred             cceEEEEcCCCCchhHHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~   32 (313)
                      ...|++.|.+||||||+.+.+.-
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            44688999999999999999853

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.26  E-value=0.0085  Score=51.88  Aligned_cols=19  Identities=32%  Similarity=0.601  Sum_probs=17.0

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      -+.++|.+|||||||+|-+
T Consensus        34 ~~~liG~nGsGKSTLlk~l   52 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCI   52 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4679999999999999876

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.25  E-value=0.0092  Score=51.21  Aligned_cols=27  Identities=26%  Similarity=0.380  Sum_probs=22.1

Q ss_pred             ccceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r~~~~   35 (313)
                      ....|++.|.+||||||+.+.+.-.++
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            456789999999999999999854443

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.25  E-value=0.0087  Score=51.80  Aligned_cols=20  Identities=40%  Similarity=0.524  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .++++|++||||||+++-+-
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~   46 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMI   46 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHH
Confidence            58899999999999999874

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.24  E-value=0.012  Score=49.44  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      .|++.|.+||||||+.+.+.-.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999985433

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=95.24  E-value=0.0091  Score=49.39  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      -++++|++||||||+++.+.-.+
T Consensus        21 ~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           21 TLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            57899999999999999975433

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.24  E-value=0.0092  Score=51.00  Aligned_cols=19  Identities=32%  Similarity=0.476  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        30 ~~~i~G~nGsGKSTLl~~l   48 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLL   48 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6789999999999998886

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.21  E-value=0.0091  Score=51.53  Aligned_cols=19  Identities=26%  Similarity=0.496  Sum_probs=17.1

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||+|-+
T Consensus        43 i~~l~G~NGsGKSTLlk~l   61 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRII   61 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999998876

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.20  E-value=0.0091  Score=51.84  Aligned_cols=19  Identities=26%  Similarity=0.621  Sum_probs=17.1

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||+|-+
T Consensus        39 ~~~liG~nGsGKSTLl~~l   57 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLL   57 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHH
Confidence            4679999999999998886

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.18  E-value=0.0094  Score=51.22  Aligned_cols=19  Identities=42%  Similarity=0.665  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||+|-+
T Consensus        28 ~~~liG~NGsGKSTLlk~l   46 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARM   46 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHH
Confidence            5789999999999999886

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.18  E-value=0.0095  Score=50.45  Aligned_cols=19  Identities=21%  Similarity=0.452  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||+|-+
T Consensus        36 ~~~i~G~nGsGKSTLl~~l   54 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMI   54 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999998876

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.18  E-value=0.0084  Score=48.28  Aligned_cols=22  Identities=14%  Similarity=0.149  Sum_probs=15.4

Q ss_pred             ceEEEEcCCCCchhHHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~   32 (313)
                      ..|++.|.+||||||+.+.+.-
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999853

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=95.17  E-value=0.01  Score=48.79  Aligned_cols=19  Identities=26%  Similarity=0.557  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      ++.++|.+||||||+++.+
T Consensus         3 ~i~i~G~nG~GKTTll~~l   21 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKA   21 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHH
Confidence            5789999999999999986

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.17  E-value=0.0096  Score=51.14  Aligned_cols=19  Identities=37%  Similarity=0.487  Sum_probs=17.1

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||+|-+
T Consensus        31 ~~~l~G~nGsGKSTLlk~l   49 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKIL   49 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4779999999999998886

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.16  E-value=0.0095  Score=51.62  Aligned_cols=19  Identities=32%  Similarity=0.625  Sum_probs=17.1

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||+|-+
T Consensus        52 i~~liG~NGsGKSTLlk~l   70 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCL   70 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHH
Confidence            4679999999999998876

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=95.15  E-value=0.0066  Score=51.22  Aligned_cols=20  Identities=25%  Similarity=0.434  Sum_probs=13.9

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+.++|++||||||+++.+.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             EEEEECSCC----CHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999874

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.13  E-value=0.01  Score=48.34  Aligned_cols=18  Identities=33%  Similarity=0.575  Sum_probs=17.1

Q ss_pred             EEEEcCCCCchhHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        13 illlG~~~sGKst~~kq~   30 (313)
                      ++++|+++||||||..|+
T Consensus         2 ilV~Gg~~SGKS~~A~~l   19 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEAL   19 (180)
T ss_dssp             EEEEECTTSSHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            789999999999999997

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.12  E-value=0.01  Score=49.51  Aligned_cols=20  Identities=20%  Similarity=0.268  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -++++|.+|||||||++++-
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~   44 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFI   44 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            47889999999999999984

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.12  E-value=0.011  Score=47.17  Aligned_cols=22  Identities=18%  Similarity=0.436  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCchhHHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~   33 (313)
                      .|++.|.+||||||+.+.+.-.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998543

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.11  E-value=0.011  Score=53.69  Aligned_cols=26  Identities=27%  Similarity=0.520  Sum_probs=21.6

Q ss_pred             cceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~~~~   35 (313)
                      .-++.++|++|||||||++.+--++.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            34889999999999999999855543

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.10  E-value=0.011  Score=51.16  Aligned_cols=19  Identities=47%  Similarity=0.567  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||+|-+
T Consensus        48 ~~~i~G~nGsGKSTLl~~l   66 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLL   66 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999886

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.10  E-value=0.01  Score=51.64  Aligned_cols=19  Identities=37%  Similarity=0.506  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||+|-+
T Consensus        47 ~~~i~G~nGsGKSTLlk~l   65 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALL   65 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999886

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.09  E-value=0.0099  Score=52.16  Aligned_cols=24  Identities=25%  Similarity=0.289  Sum_probs=20.3

Q ss_pred             ccceEEEEcCCCCchhHHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r~   32 (313)
                      ...-|++.|.+||||||+.+.+.-
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999843

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.08  E-value=0.013  Score=49.15  Aligned_cols=25  Identities=28%  Similarity=0.421  Sum_probs=19.4

Q ss_pred             cceE-EEEcCCCCchhHHHHHHHHHh
Q psy8318          10 EVKL-LLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        10 ~~ki-lllG~~~sGKst~~kq~r~~~   34 (313)
                      ..|| +++|++||||+|.++.+.--+
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3354 578999999999999985444

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.07  E-value=0.01  Score=51.06  Aligned_cols=19  Identities=37%  Similarity=0.586  Sum_probs=17.1

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        33 ~~~l~G~nGsGKSTLl~~l   51 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLL   51 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999998876

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.05  E-value=0.011  Score=51.33  Aligned_cols=19  Identities=42%  Similarity=0.574  Sum_probs=17.1

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||+|-+
T Consensus        35 ~~~liG~nGsGKSTLl~~i   53 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIV   53 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHH
Confidence            5679999999999998876

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.05  E-value=0.014  Score=47.19  Aligned_cols=23  Identities=26%  Similarity=0.267  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~   33 (313)
                      ..|++.|.+||||||+.+.+.-.
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998543

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=95.04  E-value=0.012  Score=47.64  Aligned_cols=23  Identities=30%  Similarity=0.497  Sum_probs=19.8

Q ss_pred             ccceEEEEcCCCCchhHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r   31 (313)
                      +..-|++.|.+||||||+.+.+.
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~   34 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLA   34 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHH
Confidence            34568999999999999999974

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.03  E-value=0.011  Score=51.33  Aligned_cols=19  Identities=32%  Similarity=0.496  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||+|-+
T Consensus        48 ~~~l~G~NGsGKSTLlk~l   66 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATL   66 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999998886

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=95.03  E-value=0.012  Score=51.10  Aligned_cols=19  Identities=37%  Similarity=0.819  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||+|-+
T Consensus        32 ~~~i~G~NGsGKSTLlk~l   50 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAI   50 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999886

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.03  E-value=0.011  Score=50.81  Aligned_cols=20  Identities=30%  Similarity=0.408  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+++.|.+||||||+.+++-
T Consensus         3 li~I~G~~GSGKSTla~~La   22 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIA   22 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            36899999999999999973

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.02  E-value=0.012  Score=51.55  Aligned_cols=19  Identities=32%  Similarity=0.623  Sum_probs=17.1

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||+|-+
T Consensus        49 ~~~liG~NGsGKSTLlk~l   67 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNIL   67 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHH
Confidence            5789999999999998875

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.01  E-value=0.011  Score=50.92  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=19.4

Q ss_pred             ceEEEEcCCCCchhHHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~   32 (313)
                      .-|++.|.+||||||+.+.+.-
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            3689999999999999999853

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=95.00  E-value=0.013  Score=48.39  Aligned_cols=24  Identities=25%  Similarity=0.434  Sum_probs=20.2

Q ss_pred             ccceEEEEcCCCCchhHHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r~   32 (313)
                      +...|.+.|.+||||||+++.+.-
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345688999999999999999753

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=94.97  E-value=0.014  Score=51.81  Aligned_cols=27  Identities=19%  Similarity=0.218  Sum_probs=21.5

Q ss_pred             ccceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r~~~~   35 (313)
                      ...-|.++|++|||||||++.+.-+..
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence            344678999999999999998865443

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=94.97  E-value=0.015  Score=46.14  Aligned_cols=24  Identities=29%  Similarity=0.528  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHhc
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~~   35 (313)
                      -|++.|.+||||||+.+.+.--.+
T Consensus         9 ~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999864333

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=94.91  E-value=0.013  Score=50.03  Aligned_cols=25  Identities=24%  Similarity=0.313  Sum_probs=20.6

Q ss_pred             cceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~~~   34 (313)
                      ...|.++|++||||||+++.+.-+.
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3468899999999999999885443

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=94.90  E-value=0.013  Score=48.57  Aligned_cols=20  Identities=30%  Similarity=0.293  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -++++|.+|||||||++++-
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~   41 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTG   41 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999974

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=94.90  E-value=0.014  Score=46.94  Aligned_cols=23  Identities=22%  Similarity=0.361  Sum_probs=19.6

Q ss_pred             cceEEEEcCCCCchhHHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~   32 (313)
                      ...|++.|.+||||||+.+.+.-
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999999853

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=94.82  E-value=0.014  Score=48.05  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=19.7

Q ss_pred             cceEEEEcCCCCchhHHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~   32 (313)
                      ..-|.+.|.+||||||+++.+.-
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999998753

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=94.79  E-value=0.017  Score=47.57  Aligned_cols=29  Identities=21%  Similarity=0.211  Sum_probs=23.5

Q ss_pred             hccceEEEEcCCCCchhHHHHHHHHHhcC
Q psy8318           8 EREVKLLLLGAGESGKSTIVKQMKIIHET   36 (313)
Q Consensus         8 ~~~~killlG~~~sGKst~~kq~r~~~~~   36 (313)
                      ...+.|.+.|..||||||+.+.+.-.++-
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~   38 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNKYGA   38 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            35678889999999999999998755443

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=94.78  E-value=0.0067  Score=50.22  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCchhHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~   32 (313)
                      -|++.|.+||||||+++.+.-
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999853

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=94.77  E-value=0.014  Score=51.59  Aligned_cols=23  Identities=22%  Similarity=0.368  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      .+.++|++|||||||++-+--++
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhhc
Confidence            68899999999999999885444

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=94.74  E-value=0.016  Score=48.28  Aligned_cols=23  Identities=30%  Similarity=0.294  Sum_probs=20.2

Q ss_pred             cceEEEEcCCCCchhHHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~   32 (313)
                      ...|.+.|.+||||||+.+.+.-
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999864

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=94.74  E-value=0.015  Score=48.24  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=19.6

Q ss_pred             cceEEEEcCCCCchhHHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~   32 (313)
                      ..-|++.|.+||||||+.+.+.-
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999999853

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=94.69  E-value=0.017  Score=49.59  Aligned_cols=20  Identities=25%  Similarity=0.413  Sum_probs=18.4

Q ss_pred             ceEEEEcCCCCchhHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~   30 (313)
                      ..|.++|.+||||||+++.+
T Consensus        28 ~~I~I~G~~GsGKSTl~k~L   47 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKAL   47 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999987

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=94.65  E-value=0.015  Score=50.93  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCchhHHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~   33 (313)
                      -++++|.+|||||||++++-..
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999998543

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=94.63  E-value=0.015  Score=52.64  Aligned_cols=20  Identities=30%  Similarity=0.655  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+.++|++||||||++|-+-
T Consensus        32 ~~~llGpsGsGKSTLLr~ia   51 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLA   51 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHh
Confidence            46799999999999998864

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=94.62  E-value=0.016  Score=50.88  Aligned_cols=19  Identities=21%  Similarity=0.452  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||+|-+
T Consensus        66 ~~~i~G~NGsGKSTLlk~l   84 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMI   84 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHH
Confidence            5789999999999998876

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=94.56  E-value=0.017  Score=48.58  Aligned_cols=21  Identities=19%  Similarity=0.371  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCchhHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~   32 (313)
                      -++++|.+|||||||++++-.
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            478999999999999999854

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=94.54  E-value=0.022  Score=45.80  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHhc
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~~   35 (313)
                      -.+++|.+||||||+++-+..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            468999999999999999866543

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=94.54  E-value=0.023  Score=48.64  Aligned_cols=25  Identities=20%  Similarity=0.316  Sum_probs=21.2

Q ss_pred             ccceEEEEcCCCCchhHHHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r~~   33 (313)
                      +.+.|.+.|.+||||||+.+.+.-.
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999998653

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=94.53  E-value=0.022  Score=50.01  Aligned_cols=27  Identities=22%  Similarity=0.142  Sum_probs=22.1

Q ss_pred             hccceEEEEcCCCCchhHHHHHHHHHh
Q psy8318           8 EREVKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus         8 ~~~~killlG~~~sGKst~~kq~r~~~   34 (313)
                      .+...|.+.|++||||||+++.+.-++
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l   55 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHL   55 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            345678899999999999999886544

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=94.51  E-value=0.017  Score=52.20  Aligned_cols=20  Identities=40%  Similarity=0.592  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+.++|++||||||++|-+-
T Consensus        43 ~~~llGpnGsGKSTLLr~ia   62 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIA   62 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHh
Confidence            46799999999999999863

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.51  E-value=0.013  Score=47.28  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      .+.++|.+||||||+++.+--++
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999874444

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=94.47  E-value=0.019  Score=49.34  Aligned_cols=23  Identities=35%  Similarity=0.380  Sum_probs=19.9

Q ss_pred             cceEEEEcCCCCchhHHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~   32 (313)
                      .-.|+++|.+||||||+.+.+--
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999999844

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=94.43  E-value=0.021  Score=49.85  Aligned_cols=24  Identities=33%  Similarity=0.365  Sum_probs=20.9

Q ss_pred             ccceEEEEcCCCCchhHHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r~   32 (313)
                      +...|.+.|.+||||||+.+.+..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            356789999999999999999873

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=94.43  E-value=0.019  Score=52.10  Aligned_cols=20  Identities=30%  Similarity=0.438  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+.++|++||||||++|-+-
T Consensus        31 ~~~llGpnGsGKSTLLr~ia   50 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLA   50 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCchHHHHHHHHH
Confidence            46799999999999998864

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.43  E-value=0.018  Score=53.35  Aligned_cols=19  Identities=32%  Similarity=0.574  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      ++.++|.+|||||||++-+
T Consensus        44 ~vaLvG~nGaGKSTLln~L   62 (427)
T 2qag_B           44 NILCVGETGLGKSTLMDTL   62 (427)
T ss_dssp             EEEEECSTTSSSHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999998885

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.37  E-value=0.021  Score=46.16  Aligned_cols=19  Identities=26%  Similarity=0.447  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      -+++.|.+||||||+++.+
T Consensus         8 ~i~i~G~sGsGKTTl~~~l   26 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKL   26 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHH
Confidence            5789999999999999986

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=94.36  E-value=0.022  Score=48.38  Aligned_cols=25  Identities=16%  Similarity=0.299  Sum_probs=20.7

Q ss_pred             ccceEEEEcCCCCchhHHHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r~~   33 (313)
                      ..+.|.+.|++||||||+.+.+--.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~   32 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARA   32 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999987433

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=94.36  E-value=0.019  Score=52.03  Aligned_cols=20  Identities=40%  Similarity=0.569  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+.++|++||||||++|-+-
T Consensus        31 ~~~llGpnGsGKSTLLr~ia   50 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIA   50 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHh
Confidence            46799999999999998863

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=94.35  E-value=0.019  Score=52.34  Aligned_cols=20  Identities=25%  Similarity=0.561  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+.++|++||||||++|-+-
T Consensus        31 ~~~llGpsGsGKSTLLr~ia   50 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIA   50 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCchHHHHHHHHH
Confidence            46799999999999998864

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=94.34  E-value=0.02  Score=51.87  Aligned_cols=19  Identities=42%  Similarity=0.541  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .++++|++||||||+++-+
T Consensus       125 ~i~I~GptGSGKTTlL~~l  143 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAM  143 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999976

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=94.33  E-value=0.02  Score=49.76  Aligned_cols=21  Identities=29%  Similarity=0.360  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCchhHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~   32 (313)
                      -++++|.+|||||||++++-.
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999853

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=94.33  E-value=0.02  Score=44.93  Aligned_cols=19  Identities=21%  Similarity=0.410  Sum_probs=17.3

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      -++++|.+||||||+++-+
T Consensus        38 ~~~l~G~~G~GKTtL~~~i   56 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAW   56 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999998886

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=94.32  E-value=0.02  Score=52.15  Aligned_cols=20  Identities=30%  Similarity=0.595  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+.++|++||||||++|-+-
T Consensus        31 ~~~llGpnGsGKSTLLr~ia   50 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIA   50 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcHHHHHHHHHH
Confidence            46799999999999998864

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=94.30  E-value=0.021  Score=50.06  Aligned_cols=21  Identities=33%  Similarity=0.461  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCchhHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~   32 (313)
                      -|++.|.+||||||+.+.+.-
T Consensus         4 ~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            4 IILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999854

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=94.29  E-value=0.02  Score=52.09  Aligned_cols=20  Identities=35%  Similarity=0.599  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+.++|++||||||++|-+-
T Consensus        39 ~~~llGpnGsGKSTLLr~ia   58 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIA   58 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHH
Confidence            46799999999999999864

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=94.29  E-value=0.028  Score=50.12  Aligned_cols=26  Identities=23%  Similarity=0.259  Sum_probs=21.3

Q ss_pred             cceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~~~~   35 (313)
                      .+=|.+.|++||||||+++.+.-+..
T Consensus        92 p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           92 PYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            44578999999999999999865543

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.29  E-value=0.016  Score=51.43  Aligned_cols=20  Identities=40%  Similarity=0.620  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+.++|.+|||||||++-+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~  101 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLF  101 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHT
T ss_pred             EEEEECCCCchHHHHHHHHH
Confidence            68899999999999998863

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=94.28  E-value=0.026  Score=49.98  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=21.3

Q ss_pred             cceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~~~~   35 (313)
                      ...|.++|++||||||+++.+.-+..
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            35688999999999999999865443

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=94.26  E-value=0.023  Score=45.42  Aligned_cols=20  Identities=30%  Similarity=0.507  Sum_probs=18.1

Q ss_pred             ceEEEEcCCCCchhHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~   30 (313)
                      -.+++.|.+|+||||+++.+
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~   63 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGL   63 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHH
Confidence            45899999999999999986

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=94.23  E-value=0.022  Score=49.50  Aligned_cols=19  Identities=32%  Similarity=0.532  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r   31 (313)
                      ++++|++|+||||+++.+-
T Consensus        47 vlL~Gp~GtGKTtLakala   65 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVA   65 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            8999999999999999874

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=94.20  E-value=0.016  Score=48.89  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=18.8

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      ..-|.+.|..||||||+++.+.
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~   41 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFE   41 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTG
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3468899999999999998864

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=94.09  E-value=0.024  Score=51.44  Aligned_cols=22  Identities=27%  Similarity=0.554  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCchhHHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~   33 (313)
                      -+.++|.+|||||||+|-+--+
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHhcC
Confidence            4679999999999999887533

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=94.09  E-value=0.025  Score=48.26  Aligned_cols=20  Identities=25%  Similarity=0.471  Sum_probs=18.1

Q ss_pred             EEEEcCCCCchhHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~   32 (313)
                      ++++|++|+||||+++.+--
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998743

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=94.08  E-value=0.017  Score=52.11  Aligned_cols=20  Identities=20%  Similarity=0.486  Sum_probs=17.6

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+.++|++||||||++|-+-
T Consensus        28 ~~~llGpnGsGKSTLLr~ia   47 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIA   47 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHH
Confidence            46899999999999998864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=94.05  E-value=0.023  Score=51.50  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=19.1

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      .-.++++|.+||||||+++-+-
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~  196 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALM  196 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3478999999999999999873

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=93.97  E-value=0.034  Score=49.19  Aligned_cols=24  Identities=21%  Similarity=0.346  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~   34 (313)
                      -.+.++|.+||||||+++-+--++
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHH
Confidence            467899999999999999885444

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=93.96  E-value=0.022  Score=50.99  Aligned_cols=20  Identities=30%  Similarity=0.559  Sum_probs=17.9

Q ss_pred             ceEEEEcCCCCchhHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~   30 (313)
                      -.++++|++||||||+++-+
T Consensus       172 ~~v~i~G~~GsGKTTll~~l  191 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSI  191 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHG
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            37899999999999998886

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=93.94  E-value=0.026  Score=51.41  Aligned_cols=20  Identities=40%  Similarity=0.524  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .++++|++||||||+++-+-
T Consensus       138 ~i~ivG~~GsGKTTll~~l~  157 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMI  157 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999874

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=93.92  E-value=0.03  Score=45.04  Aligned_cols=19  Identities=26%  Similarity=0.447  Sum_probs=17.0

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.+.|.+||||||++..+
T Consensus         6 ~i~i~G~sGsGKTTl~~~L   24 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKW   24 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4679999999999999886

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=93.90  E-value=0.028  Score=49.70  Aligned_cols=22  Identities=18%  Similarity=0.451  Sum_probs=18.7

Q ss_pred             ceEEEEcCCCCchhHHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~   32 (313)
                      --+.++|.+||||||+++-+--
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            3578999999999999998743

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=93.89  E-value=0.026  Score=52.90  Aligned_cols=21  Identities=14%  Similarity=0.589  Sum_probs=18.6

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      -.+.++|.+|||||||+|-+-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~  159 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLC  159 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            378999999999999999863

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=93.88  E-value=0.029  Score=47.38  Aligned_cols=26  Identities=19%  Similarity=0.245  Sum_probs=21.2

Q ss_pred             ccceEEEEcCCCCchhHHHHHHHHHh
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r~~~   34 (313)
                      +..-|++.|.+||||||+++.+.-..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l   50 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRL   50 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34578999999999999999985433

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=93.82  E-value=0.028  Score=51.53  Aligned_cols=20  Identities=40%  Similarity=0.549  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+.++|++||||||+++-+-
T Consensus        49 ~~~llGpsGsGKSTLLr~ia   68 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFL   68 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHh
Confidence            57899999999999998863

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=93.82  E-value=0.029  Score=50.58  Aligned_cols=23  Identities=17%  Similarity=0.196  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~   33 (313)
                      -++.++|.+|+||||+++.+--+
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37899999999999999998443

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=93.79  E-value=0.019  Score=49.45  Aligned_cols=24  Identities=38%  Similarity=0.429  Sum_probs=20.1

Q ss_pred             hccceEEEEcCCCCchhHHHHHHH
Q psy8318           8 EREVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus         8 ~~~~killlG~~~sGKst~~kq~r   31 (313)
                      ++...|++.|..||||||+++.+.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~   45 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILK   45 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHH
Confidence            445678999999999999999874

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=93.76  E-value=0.03  Score=51.87  Aligned_cols=19  Identities=37%  Similarity=0.392  Sum_probs=17.6

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      -++++|+.||||||+++-+
T Consensus       169 ii~I~GpnGSGKTTlL~al  187 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAG  187 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHH
Confidence            4799999999999999986

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=93.74  E-value=0.032  Score=46.56  Aligned_cols=21  Identities=19%  Similarity=0.404  Sum_probs=18.9

Q ss_pred             cceEEEEcCCCCchhHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~   30 (313)
                      .-.+++.|++|+||||+++.+
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l   72 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAA   72 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHH
Confidence            457899999999999999987

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=93.70  E-value=0.031  Score=47.00  Aligned_cols=19  Identities=32%  Similarity=0.504  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      -++++|.+|||||||+.|+
T Consensus        25 ~~~i~G~~GsGKTtl~~~~   43 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQF   43 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4689999999999999887

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=93.69  E-value=0.018  Score=52.14  Aligned_cols=20  Identities=25%  Similarity=0.567  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+.++|++||||||++|-+-
T Consensus        33 ~~~llGpnGsGKSTLLr~ia   52 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIA   52 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHh
Confidence            46799999999999998763

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=93.67  E-value=0.031  Score=50.43  Aligned_cols=23  Identities=17%  Similarity=0.309  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      -+.++|.+|||||||++|+-...
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46899999999999999985543

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=93.58  E-value=0.03  Score=49.78  Aligned_cols=20  Identities=30%  Similarity=0.444  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -++++|..||||||+++.+-
T Consensus         6 v~~i~G~~GaGKTTll~~l~   25 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHIL   25 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHH
Confidence            35789999999999999874

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=93.57  E-value=0.035  Score=48.12  Aligned_cols=20  Identities=25%  Similarity=0.471  Sum_probs=18.1

Q ss_pred             EEEEcCCCCchhHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~   32 (313)
                      ++++|.+|+||||+++.+--
T Consensus        76 vll~Gp~GtGKTtl~~~i~~   95 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAG   95 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHH
Confidence            89999999999999998743

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=93.51  E-value=0.034  Score=51.38  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=18.7

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      ..-|++.|.+||||||+.+++.
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~  279 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHL  279 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3457889999999999999963

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=93.51  E-value=0.04  Score=46.53  Aligned_cols=24  Identities=29%  Similarity=0.506  Sum_probs=20.5

Q ss_pred             ccceEEEEcCCCCchhHHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r~   32 (313)
                      +...|.+.|.+||||||+.+.+.-
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999998754

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=93.49  E-value=0.051  Score=45.97  Aligned_cols=29  Identities=31%  Similarity=0.444  Sum_probs=21.6

Q ss_pred             hhccceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318           7 QEREVKLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus         7 ~~~~~killlG~~~sGKst~~kq~r~~~~   35 (313)
                      ....+++-++|++||||||+.+.+.--++
T Consensus         5 ~~~~~~~~~~G~pGsGKsT~a~~L~~~~g   33 (230)
T 3gmt_A            5 HHHHMRLILLGAPGAGKGTQANFIKEKFG   33 (230)
T ss_dssp             ----CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cccccceeeECCCCCCHHHHHHHHHHHhC
Confidence            34678999999999999999999854443

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=93.48  E-value=0.037  Score=48.85  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=18.6

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      -.+.++|.+|||||||++.+-
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            357899999999999999975

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=93.45  E-value=0.034  Score=53.04  Aligned_cols=19  Identities=26%  Similarity=0.405  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      -++++|.+|||||||++++
T Consensus        41 ~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           41 STLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHH
Confidence            4789999999999999994

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=93.44  E-value=0.051  Score=42.59  Aligned_cols=21  Identities=29%  Similarity=0.512  Sum_probs=18.3

Q ss_pred             EEEEcCCCCchhHHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~~   33 (313)
                      .+++|+.||||||++.-+...
T Consensus        26 ~~I~G~NGsGKStil~Ai~~~   46 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAILVG   46 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            479999999999999998753

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=93.44  E-value=0.037  Score=49.48  Aligned_cols=24  Identities=21%  Similarity=0.444  Sum_probs=19.9

Q ss_pred             ccceEEEEcCCCCchhHHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r~   32 (313)
                      +.--+.++|.+||||||+++.+--
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345688999999999999998743

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=93.42  E-value=0.051  Score=44.44  Aligned_cols=24  Identities=21%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHhc
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~~   35 (313)
                      .|.+.|.+||||||+.+.+.-..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            578999999999999999865444

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=93.41  E-value=0.03  Score=44.65  Aligned_cols=22  Identities=32%  Similarity=0.502  Sum_probs=19.0

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      .-.+++.|.+|+||||+++.+-
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~   64 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLA   64 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHH
Confidence            3468999999999999999873

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=93.37  E-value=0.039  Score=48.62  Aligned_cols=19  Identities=21%  Similarity=0.375  Sum_probs=17.3

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+||||||+++.+
T Consensus       171 iv~l~G~sG~GKSTll~~l  189 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAI  189 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHh
Confidence            5789999999999999986

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=93.29  E-value=0.039  Score=52.02  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=18.8

Q ss_pred             ceEEEEcCCCCchhHHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~   32 (313)
                      --++++|.+||||||+++.|--
T Consensus       294 eVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCcccHHHHHHHHHH
Confidence            3578999999999999998743

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=93.29  E-value=0.041  Score=46.93  Aligned_cols=21  Identities=24%  Similarity=0.502  Sum_probs=18.7

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      -.+++.|.+|+||||+++.+-
T Consensus        46 ~~vll~G~~GtGKT~la~~la   66 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIA   66 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHH
Confidence            358999999999999999874

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=93.22  E-value=0.041  Score=51.24  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=19.7

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~   33 (313)
                      -++.++|.+|||||||++.+--+
T Consensus       158 q~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          158 QRMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcc
Confidence            37899999999999999988443

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=93.14  E-value=0.041  Score=52.31  Aligned_cols=21  Identities=24%  Similarity=0.515  Sum_probs=18.5

Q ss_pred             cceEEEEcCCCCchhHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~   30 (313)
                      ...++++|+.||||||+++-+
T Consensus       260 g~~i~I~GptGSGKTTlL~aL  280 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAI  280 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHH
Confidence            335999999999999999986

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=93.14  E-value=0.043  Score=49.66  Aligned_cols=22  Identities=18%  Similarity=0.451  Sum_probs=18.8

Q ss_pred             ceEEEEcCCCCchhHHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~   32 (313)
                      --+.++|.+||||||+++-+--
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHh
Confidence            3578999999999999998743

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=93.13  E-value=0.047  Score=44.61  Aligned_cols=20  Identities=25%  Similarity=0.333  Sum_probs=18.2

Q ss_pred             ceEEEEcCCCCchhHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~   30 (313)
                      -.+++.|.+|+||||+++.+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i   74 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAI   74 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHH
Confidence            46899999999999999886

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=93.12  E-value=0.047  Score=47.14  Aligned_cols=21  Identities=38%  Similarity=0.803  Sum_probs=19.2

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      ++++++|.+|+|||||++.+.
T Consensus       100 ~~v~~vG~~~vGKSslin~l~  120 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLK  120 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             hheEEeCCCCCCHHHHHHHHh
Confidence            599999999999999999863

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=93.06  E-value=0.046  Score=48.84  Aligned_cols=21  Identities=29%  Similarity=0.417  Sum_probs=18.5

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      -.++++|++|+||||+++-+-
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia   72 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIA   72 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            358999999999999999874

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=93.05  E-value=0.046  Score=49.45  Aligned_cols=19  Identities=21%  Similarity=0.455  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++.+
T Consensus       217 ~~~lvG~sG~GKSTLln~L  235 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNAL  235 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHH
Confidence            6889999999999999886

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=92.89  E-value=0.053  Score=44.91  Aligned_cols=20  Identities=25%  Similarity=0.473  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+++.|.+|+||||+++.+-
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~   66 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLA   66 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47999999999999999873

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=92.88  E-value=0.054  Score=44.30  Aligned_cols=20  Identities=25%  Similarity=0.434  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+++.|.+|+||||+++.+-
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~   59 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALA   59 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            49999999999999999873

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=92.75  E-value=0.046  Score=47.94  Aligned_cols=24  Identities=21%  Similarity=0.331  Sum_probs=17.5

Q ss_pred             cceEEEEcCCCCchhHHHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~~   33 (313)
                      ..-|.+-|++||||||+.+.+.-.
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~   28 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQI   28 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            446889999999999999998654

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=92.74  E-value=0.052  Score=49.92  Aligned_cols=20  Identities=25%  Similarity=0.350  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -++++|.+|||||||++|+-
T Consensus       180 i~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHH
Confidence            47899999999999999974

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=92.72  E-value=0.066  Score=41.46  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=19.9

Q ss_pred             hccceEEEEcCCCCchhHHHHHH
Q psy8318           8 EREVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus         8 ~~~~killlG~~~sGKst~~kq~   30 (313)
                      .....|++.|.+|+|||++.+.+
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i   44 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYL   44 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHH
Confidence            34567999999999999999885

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=92.72  E-value=0.056  Score=49.90  Aligned_cols=21  Identities=24%  Similarity=0.476  Sum_probs=18.5

Q ss_pred             cceEEEEcCCCCchhHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~   30 (313)
                      ...+.++|.+|||||||++.+
T Consensus        69 ~~~valvG~nGaGKSTLln~L   89 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTL   89 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHH
Confidence            347889999999999999986

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=92.62  E-value=0.057  Score=51.68  Aligned_cols=20  Identities=35%  Similarity=0.486  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+.++|.+|||||||+|-+-
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~   68 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILA   68 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            67899999999999988863

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=92.56  E-value=0.062  Score=46.90  Aligned_cols=22  Identities=32%  Similarity=0.735  Sum_probs=20.1

Q ss_pred             ccceEEEEcCCCCchhHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~   30 (313)
                      ..++++++|.+++|||||++.+
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l  140 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRL  140 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHH
T ss_pred             CCceEEEEecCCCchHHHHHHH
Confidence            5678999999999999999986

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=92.55  E-value=0.059  Score=49.12  Aligned_cols=21  Identities=29%  Similarity=0.370  Sum_probs=18.6

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      -.++++|++||||||+++.+-
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~  190 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALL  190 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            368899999999999999874

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=92.52  E-value=0.069  Score=45.13  Aligned_cols=22  Identities=36%  Similarity=0.376  Sum_probs=19.2

Q ss_pred             ceEEEEcCCCCchhHHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~   32 (313)
                      ..|++-|..||||||+++.+.-
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            4688999999999999999854

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=92.40  E-value=0.063  Score=47.22  Aligned_cols=24  Identities=25%  Similarity=0.495  Sum_probs=19.7

Q ss_pred             cceEEEEcCCCCchhHHHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~~   33 (313)
                      .-.++++|.+||||||++..+-..
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~  128 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAI  128 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            336889999999999999987543

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=92.34  E-value=0.085  Score=43.65  Aligned_cols=25  Identities=32%  Similarity=0.432  Sum_probs=21.0

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~~   35 (313)
                      +.|.+.|..||||||+.+.+.-.++
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~g   28 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASELS   28 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            5789999999999999999865443

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=92.32  E-value=0.066  Score=46.26  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=19.3

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      .-.+|+.|++|+||||+++.+-
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la   72 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVA   72 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHH
Confidence            3469999999999999999873

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=92.28  E-value=0.067  Score=46.57  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=19.3

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      .--+|+.|++|+||||+++.+-
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la   75 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVA   75 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHH
Confidence            4578999999999999999873

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=92.25  E-value=0.093  Score=43.29  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=19.3

Q ss_pred             EEEEcCCCCchhHHHHHHHHHhc
Q psy8318          13 LLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~~~~   35 (313)
                      .+++|.+||||||++.-+.....
T Consensus        26 ~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhc
Confidence            57899999999999999876443

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=92.21  E-value=0.067  Score=50.34  Aligned_cols=23  Identities=26%  Similarity=0.235  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      -+.++|.+||||||+++-+--+.
T Consensus        31 ~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhcCC
Confidence            56799999999999999875443

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=92.20  E-value=0.031  Score=49.52  Aligned_cols=20  Identities=20%  Similarity=0.433  Sum_probs=18.2

Q ss_pred             ceEEEEcCCCCchhHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~   30 (313)
                      -.+.++|.+|||||||++.+
T Consensus       174 ~~~~lvG~sG~GKSTLln~L  193 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAI  193 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHh
Confidence            46899999999999999986

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=92.14  E-value=0.068  Score=50.90  Aligned_cols=22  Identities=23%  Similarity=0.465  Sum_probs=19.2

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      ..-|+|+|.+||||||+.+++.
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La   56 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLT   56 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3458899999999999999984

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=92.09  E-value=0.069  Score=51.56  Aligned_cols=20  Identities=40%  Similarity=0.567  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      ++.++|++||||||+++-+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~  390 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLIT  390 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            68899999999999999863

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=92.06  E-value=0.076  Score=45.10  Aligned_cols=21  Identities=33%  Similarity=0.472  Sum_probs=18.5

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      --+|+.|.+|+||||+++.+-
T Consensus        40 ~~vll~G~~GtGKT~la~~la   60 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVA   60 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            358999999999999999873

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=92.00  E-value=0.072  Score=50.95  Aligned_cols=19  Identities=37%  Similarity=0.543  Sum_probs=16.7

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      -+.++|.+||||||++|-+
T Consensus        27 i~gLiGpNGaGKSTLlkiL   45 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKIL   45 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHH
Confidence            3679999999999998876

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=92.00  E-value=0.075  Score=47.01  Aligned_cols=21  Identities=14%  Similarity=0.398  Sum_probs=18.6

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      --+++.|++|+||||+++.+-
T Consensus        38 ~~lll~G~~GtGKT~la~~i~   58 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAG   58 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            368999999999999999873

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=91.98  E-value=0.077  Score=46.90  Aligned_cols=22  Identities=18%  Similarity=0.463  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCchhHHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~   33 (313)
                      -++++|.+||||||++..+-..
T Consensus       106 vi~ivG~~GsGKTTl~~~LA~~  127 (306)
T 1vma_A          106 VIMVVGVNGTGKTTSCGKLAKM  127 (306)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCChHHHHHHHHHHH
Confidence            5789999999999999988543

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=91.96  E-value=0.07  Score=53.19  Aligned_cols=20  Identities=35%  Similarity=0.556  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -++++|++||||||++|++-
T Consensus       578 i~~I~GpNGsGKSTlLr~ia  597 (765)
T 1ewq_A          578 LVLITGPNMAGKSTFLRQTA  597 (765)
T ss_dssp             EEEEESCSSSSHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHH
Confidence            47899999999999999974

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=91.95  E-value=0.077  Score=46.57  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=19.0

Q ss_pred             ceEEEEcCCCCchhHHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~   32 (313)
                      --+|+.|++|+||||+++.+--
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHH
Confidence            3589999999999999998743

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=91.95  E-value=0.073  Score=51.40  Aligned_cols=23  Identities=35%  Similarity=0.439  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      ++.++|.+||||||+++-+--++
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999874333

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=91.85  E-value=0.074  Score=53.29  Aligned_cols=20  Identities=35%  Similarity=0.541  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -++++|++||||||++|++-
T Consensus       609 i~~ItGpNGsGKSTlLr~ia  628 (800)
T 1wb9_A          609 MLIITGPNMGGKSTYMRQTA  628 (800)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHH
Confidence            47899999999999999974

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=91.76  E-value=0.085  Score=47.29  Aligned_cols=22  Identities=18%  Similarity=0.375  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCchhHHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~   33 (313)
                      -|++.|++|||||||.+.+...
T Consensus         9 lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            9 LIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCcHHHHHHHHHHH
Confidence            4789999999999999987543

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=91.76  E-value=0.082  Score=47.78  Aligned_cols=20  Identities=25%  Similarity=0.401  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~   32 (313)
                      +++.|++|||||||+.|+-.
T Consensus        64 ~~I~GppGsGKSTLal~la~   83 (356)
T 3hr8_A           64 VEIFGQESSGKTTLALHAIA   83 (356)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999843

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=91.74  E-value=0.08  Score=51.40  Aligned_cols=20  Identities=40%  Similarity=0.466  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+.++|.+||||||++|-+-
T Consensus       105 i~~LvGpNGaGKSTLLkiL~  124 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILA  124 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHh
Confidence            57899999999999988763

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=91.71  E-value=0.084  Score=51.26  Aligned_cols=19  Identities=32%  Similarity=0.506  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||+|-+
T Consensus       119 ~~~LiG~NGsGKSTLlkiL  137 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKIL  137 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHH
Confidence            5789999999999998876

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=91.58  E-value=0.091  Score=46.76  Aligned_cols=21  Identities=19%  Similarity=0.466  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCchhHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~   32 (313)
                      .|++.|++||||||+.+.+-.
T Consensus         7 ~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            7 AIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998743

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=91.55  E-value=0.086  Score=51.08  Aligned_cols=20  Identities=45%  Similarity=0.644  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      ++.++|.+||||||+++-+-
T Consensus       383 ~~~ivG~sGsGKSTll~~l~  402 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLM  402 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHh
Confidence            78999999999999998863

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=91.42  E-value=0.1  Score=47.07  Aligned_cols=20  Identities=45%  Similarity=0.713  Sum_probs=18.1

Q ss_pred             ceEEEEcCCCCchhHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~   30 (313)
                      ..|+++|.+||||||+.+.+
T Consensus        25 ~~i~l~G~~G~GKTTl~~~l   44 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEEL   44 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHH
Confidence            46999999999999999876

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=91.42  E-value=0.09  Score=51.03  Aligned_cols=20  Identities=30%  Similarity=0.481  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+.++|.+|||||||+|-+-
T Consensus       384 i~~i~G~NGsGKSTLlk~l~  403 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLA  403 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            57899999999999998863

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=91.28  E-value=0.098  Score=44.12  Aligned_cols=23  Identities=22%  Similarity=0.245  Sum_probs=16.9

Q ss_pred             ccceEEEEcCCCCchhHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r   31 (313)
                      +..-|++.|.+||||||+++.+.
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~   46 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFC   46 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45568999999999999999874

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=91.27  E-value=0.092  Score=53.46  Aligned_cols=19  Identities=32%  Similarity=0.466  Sum_probs=17.6

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      -++++|++||||||++|++
T Consensus       664 i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          664 FHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999998

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=91.25  E-value=0.097  Score=50.05  Aligned_cols=19  Identities=26%  Similarity=0.462  Sum_probs=17.1

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||+|-+
T Consensus       296 i~~i~G~nGsGKSTLl~~l  314 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARIL  314 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4679999999999998886

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=91.21  E-value=0.1  Score=49.90  Aligned_cols=19  Identities=32%  Similarity=0.513  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||+|-+
T Consensus       314 ~~~i~G~NGsGKSTLlk~l  332 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKML  332 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999886

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=91.21  E-value=0.11  Score=53.52  Aligned_cols=22  Identities=32%  Similarity=0.566  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCchhHHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~   33 (313)
                      -++++|++||||||++|++-++
T Consensus       791 i~~ItGpNgsGKSTlLr~iGl~  812 (1022)
T 2o8b_B          791 CVLVTGPNMGGKSTLMRQAGLL  812 (1022)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHHH
Confidence            5789999999999999998543

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=91.20  E-value=0.11  Score=42.89  Aligned_cols=20  Identities=25%  Similarity=0.446  Sum_probs=18.1

Q ss_pred             ceEEEEcCCCCchhHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~   30 (313)
                      ..|++.|++||||||+...+
T Consensus        35 ~~ilI~GpsGsGKStLA~~L   54 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALEL   54 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999886

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=91.18  E-value=0.12  Score=43.08  Aligned_cols=23  Identities=26%  Similarity=0.205  Sum_probs=19.3

Q ss_pred             cceEEEEcCCCCchhHHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~   32 (313)
                      ..-|++-|.+||||||+++.+.-
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            34688999999999999998743

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=91.17  E-value=0.085  Score=50.59  Aligned_cols=23  Identities=22%  Similarity=0.458  Sum_probs=19.6

Q ss_pred             cceEEEEcCCCCchhHHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~   32 (313)
                      ...+.++|.+||||||+++.+--
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~  391 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAA  391 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHH
Confidence            34688999999999999998843

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=91.15  E-value=0.073  Score=51.71  Aligned_cols=19  Identities=26%  Similarity=0.627  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+||||||+++-+
T Consensus        47 ~iaIvG~nGsGKSTLL~~I   65 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEAL   65 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHH
T ss_pred             eEEEECCCCChHHHHHHHH
Confidence            5899999999999998886

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=91.11  E-value=0.098  Score=49.80  Aligned_cols=21  Identities=29%  Similarity=0.411  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCchhHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~   32 (313)
                      -++++|.+|||||||++++--
T Consensus       283 i~~i~G~~GsGKSTLl~~l~g  303 (525)
T 1tf7_A          283 IILATGATGTGKTLLVSRFVE  303 (525)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            478999999999999999843

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=91.11  E-value=0.089  Score=46.94  Aligned_cols=20  Identities=35%  Similarity=0.441  Sum_probs=18.2

Q ss_pred             EEEEcCCCCchhHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~   32 (313)
                      +++.|++|+||||+++.+--
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998744

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=91.11  E-value=0.11  Score=47.18  Aligned_cols=25  Identities=20%  Similarity=0.496  Sum_probs=19.8

Q ss_pred             EEEEcCCCCchhHHHHHHHH-HhcCC
Q psy8318          13 LLLLGAGESGKSTIVKQMKI-IHETG   37 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~-~~~~~   37 (313)
                      .+++|.+||||||++.-+-. +++.+
T Consensus        26 ~~i~G~NGaGKTTll~ai~~al~g~~   51 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAISFALFGNG   51 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcCCc
Confidence            56899999999999998754 35443

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=91.08  E-value=0.11  Score=42.06  Aligned_cols=18  Identities=28%  Similarity=0.325  Sum_probs=15.6

Q ss_pred             EEEEcCCCCchhHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        13 illlG~~~sGKst~~kq~   30 (313)
                      +++.|++||||||++.|+
T Consensus         6 ~vi~G~~gsGKTT~ll~~   23 (184)
T 2orw_A            6 TVITGPMYSGKTTELLSF   23 (184)
T ss_dssp             EEEEESTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            578999999999998664

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=90.99  E-value=0.11  Score=46.84  Aligned_cols=20  Identities=25%  Similarity=0.390  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+++.|.+|||||||+.|+-
T Consensus        63 iv~I~G~pGsGKTtLal~la   82 (349)
T 2zr9_A           63 VIEIYGPESSGKTTVALHAV   82 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37899999999999999984

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=90.94  E-value=0.11  Score=45.31  Aligned_cols=21  Identities=29%  Similarity=0.517  Sum_probs=18.6

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      -.+++.|.+|+||||+++.+-
T Consensus        48 ~~~ll~G~~GtGKt~la~~la   68 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLA   68 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHH
Confidence            368999999999999999874

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=90.91  E-value=0.11  Score=46.57  Aligned_cols=22  Identities=23%  Similarity=0.443  Sum_probs=19.0

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      .--+++.|.+|+||||+++.+-
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~   66 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVL   66 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            3468999999999999999873

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=90.90  E-value=0.12  Score=44.43  Aligned_cols=23  Identities=30%  Similarity=0.475  Sum_probs=19.6

Q ss_pred             ccceEEEEcCCCCchhHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r   31 (313)
                      ....+|+.|.+|+||||+++.+-
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia   85 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIA   85 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHH
Confidence            34568999999999999999874

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=90.87  E-value=0.087  Score=50.84  Aligned_cols=19  Identities=26%  Similarity=0.571  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|++||||||+++-+
T Consensus       369 ~~~ivG~sGsGKSTll~~l  387 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLI  387 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHH
Confidence            6889999999999999875

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=90.84  E-value=0.11  Score=45.25  Aligned_cols=20  Identities=25%  Similarity=0.499  Sum_probs=18.0

Q ss_pred             ceEEEEcCCCCchhHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~   30 (313)
                      ..+|+.|++|+||||+++.+
T Consensus        68 ~~vll~G~~GtGKT~la~~l   87 (309)
T 3syl_A           68 LHMSFTGNPGTGKTTVALKM   87 (309)
T ss_dssp             CEEEEEECTTSSHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHH
Confidence            35999999999999999876

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=90.82  E-value=0.11  Score=50.37  Aligned_cols=18  Identities=33%  Similarity=0.800  Sum_probs=16.7

Q ss_pred             EEEEcCCCCchhHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        13 illlG~~~sGKst~~kq~   30 (313)
                      +.++|.+|||||||++-+
T Consensus       381 v~iiG~NGsGKSTLlk~l  398 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLL  398 (608)
T ss_dssp             EEEESCTTSSHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            689999999999999886

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=90.80  E-value=0.081  Score=53.75  Aligned_cols=20  Identities=30%  Similarity=0.569  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -++++|++||||||++|++-
T Consensus       675 i~~ItGPNGaGKSTlLr~i~  694 (918)
T 3thx_B          675 VMIITGPNMGGKSSYIKQVA  694 (918)
T ss_dssp             EEEEESCCCHHHHHHHHHHH
T ss_pred             EEEEECCCCCchHHHHHHHH
Confidence            47899999999999999973

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=90.76  E-value=0.12  Score=44.91  Aligned_cols=23  Identities=22%  Similarity=0.505  Sum_probs=19.8

Q ss_pred             cceEEEEcCCCCchhHHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~   32 (313)
                      ...+|+.|.+|+||||+++.+-.
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999998743

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=90.58  E-value=0.14  Score=43.43  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=18.9

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      ..-|++.|.+||||||+++.+.
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~   48 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVV   48 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3468899999999999999874

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=90.56  E-value=0.078  Score=40.97  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=19.1

Q ss_pred             ccceEEEEcCCCCchhHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~   30 (313)
                      ....|++.|.+|+|||++.+.+
T Consensus        26 ~~~~vll~G~~GtGKt~lA~~i   47 (143)
T 3co5_A           26 RTSPVFLTGEAGSPFETVARYF   47 (143)
T ss_dssp             CSSCEEEEEETTCCHHHHHGGG
T ss_pred             CCCcEEEECCCCccHHHHHHHH
Confidence            4557999999999999998884

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=90.51  E-value=0.13  Score=46.31  Aligned_cols=20  Identities=25%  Similarity=0.489  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+++.|.+|+||||+++.+-
T Consensus        46 ~~li~G~~G~GKTtl~~~l~   65 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLW   65 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999874

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=90.50  E-value=0.15  Score=42.90  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=20.1

Q ss_pred             hccceEEEEcCCCCchhHHHHHH
Q psy8318           8 EREVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus         8 ~~~~killlG~~~sGKst~~kq~   30 (313)
                      +..++|++.|.+|+||||++-++
T Consensus         4 ~g~l~I~~~~kgGvGKTt~a~~l   26 (228)
T 2r8r_A            4 RGRLKVFLGAAPGVGKTYAMLQA   26 (228)
T ss_dssp             CCCEEEEEESSTTSSHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHH
Confidence            56789999999999999996664

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=90.49  E-value=0.13  Score=45.64  Aligned_cols=21  Identities=33%  Similarity=0.523  Sum_probs=18.7

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      --+|+.|++|+|||++++.+-
T Consensus        46 ~~iLL~GppGtGKT~la~ala   66 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVA   66 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHH
Confidence            358999999999999999874

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=90.39  E-value=0.12  Score=50.01  Aligned_cols=19  Identities=37%  Similarity=0.559  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      ++.++|.+||||||+++-+
T Consensus       371 ~~~ivG~sGsGKSTll~~l  389 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLI  389 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            7889999999999999876

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=90.32  E-value=0.14  Score=45.76  Aligned_cols=20  Identities=35%  Similarity=0.566  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -|+++|+.||||||+...+-
T Consensus        42 lIvI~GPTgsGKTtLa~~LA   61 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLA   61 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999874

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=90.28  E-value=0.14  Score=52.37  Aligned_cols=20  Identities=25%  Similarity=0.496  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+.++|.+|||||||+|-+-
T Consensus       463 ~v~LiGpNGsGKSTLLk~La  482 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIA  482 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            67899999999999988863

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=90.20  E-value=0.16  Score=41.01  Aligned_cols=20  Identities=25%  Similarity=0.471  Sum_probs=17.8

Q ss_pred             ceEEEEcCCCCchhHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~   30 (313)
                      .=||+.|.+|+||||+.-.+
T Consensus        17 ~gvli~G~SGaGKStlal~L   36 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLAL   36 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHH
Confidence            35899999999999999886

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=90.18  E-value=0.15  Score=44.55  Aligned_cols=23  Identities=22%  Similarity=0.143  Sum_probs=18.6

Q ss_pred             cceEEEEcCCCCchhHHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~   32 (313)
                      ..-+|+.|++|+|||++++.+-.
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34567779999999999998743

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=90.11  E-value=0.08  Score=45.31  Aligned_cols=20  Identities=30%  Similarity=0.561  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+|+.|++|+||||+++.+-
T Consensus        46 ~vll~G~~GtGKT~la~~la   65 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVA   65 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            48999999999999999873

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=90.11  E-value=0.16  Score=42.44  Aligned_cols=25  Identities=20%  Similarity=0.202  Sum_probs=20.5

Q ss_pred             cceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~~~   34 (313)
                      ..-|++.|.+||||||.++.+.-..
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~~l   29 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYKKL   29 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4568899999999999999975433

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=90.09  E-value=0.15  Score=45.28  Aligned_cols=19  Identities=32%  Similarity=0.714  Sum_probs=17.4

Q ss_pred             EEEEcCCCCchhHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r   31 (313)
                      +++.|++|+|||||..|+-
T Consensus       126 iLI~GpPGsGKTtLAlqlA  144 (331)
T 2vhj_A          126 VIVTGKGNSGKTPLVHALG  144 (331)
T ss_dssp             EEEECSCSSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            6899999999999999973

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=90.08  E-value=0.15  Score=45.46  Aligned_cols=19  Identities=26%  Similarity=0.558  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r   31 (313)
                      +++.|++|+||||+++.+-
T Consensus        49 ~ll~Gp~G~GKTtla~~la   67 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALA   67 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7999999999999999873

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=90.03  E-value=0.15  Score=45.13  Aligned_cols=22  Identities=32%  Similarity=0.475  Sum_probs=19.2

Q ss_pred             ceEEEEcCCCCchhHHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~   32 (313)
                      -.+|+.|++|+|||++++.+--
T Consensus        52 ~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3599999999999999998743

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=90.00  E-value=0.15  Score=46.45  Aligned_cols=22  Identities=23%  Similarity=0.252  Sum_probs=19.0

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      ...++++|++||||||+++.+-
T Consensus        35 ~~~~~i~G~~G~GKs~~~~~~~   56 (392)
T 4ag6_A           35 NSNWTILAKPGAGKSFTAKMLL   56 (392)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHH
T ss_pred             cCceEEEcCCCCCHHHHHHHHH
Confidence            3468999999999999999773

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=89.98  E-value=0.18  Score=42.41  Aligned_cols=23  Identities=22%  Similarity=0.260  Sum_probs=19.6

Q ss_pred             ccceEEEEcCCCCchhHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r   31 (313)
                      +..-|++-|.+||||||+.+.+.
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~   42 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLA   42 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34568889999999999999874

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=89.93  E-value=0.16  Score=42.54  Aligned_cols=19  Identities=37%  Similarity=0.599  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      =+++.|.+|+|||||+-|+
T Consensus        32 l~~i~G~pG~GKT~l~l~~   50 (251)
T 2zts_A           32 TVLLTGGTGTGKTTFAAQF   50 (251)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHH
Confidence            3689999999999999997

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=89.92  E-value=0.17  Score=42.13  Aligned_cols=21  Identities=19%  Similarity=0.254  Sum_probs=18.0

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      .-|++-|.+||||||.++.+.
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~   24 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVV   24 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            357889999999999999874

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=89.90  E-value=0.18  Score=44.63  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=19.4

Q ss_pred             ceEEEEcCCCCchhHHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~   32 (313)
                      -.||+.|.+|+||||+++.+-.
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~   77 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISY   77 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            4699999999999999999743

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=89.88  E-value=0.14  Score=45.90  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=19.2

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      .-.+++.|.+|+||||+++.+-
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~   65 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVL   65 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHH
Confidence            4468999999999999999873

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=89.84  E-value=0.16  Score=45.07  Aligned_cols=21  Identities=29%  Similarity=0.513  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCchhHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~   32 (313)
                      -++++|.+||||||++..+-.
T Consensus       107 vI~ivG~~G~GKTT~~~~LA~  127 (320)
T 1zu4_A          107 IFMLVGVNGTGKTTSLAKMAN  127 (320)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            577899999999999998743

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=89.80  E-value=0.16  Score=45.54  Aligned_cols=21  Identities=14%  Similarity=0.235  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCchhHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~   32 (313)
                      -+++.|.+|||||||+.|+-.
T Consensus       124 i~~I~G~~GsGKTtla~~la~  144 (343)
T 1v5w_A          124 ITEAFGEFRTGKTQLSHTLCV  144 (343)
T ss_dssp             EEEEECCTTCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999854

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=89.77  E-value=0.16  Score=44.77  Aligned_cols=20  Identities=35%  Similarity=0.549  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+++.|.+|+||||+++++.
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~   52 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFL   52 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHH
Confidence            47899999999999999974

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=89.68  E-value=0.17  Score=44.78  Aligned_cols=20  Identities=15%  Similarity=0.292  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -|++.|++||||||+...+-
T Consensus         5 ~i~i~GptgsGKt~la~~La   24 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLA   24 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH
Confidence            36789999999999999874

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=89.59  E-value=0.27  Score=40.62  Aligned_cols=20  Identities=25%  Similarity=0.468  Sum_probs=16.6

Q ss_pred             EEEEcCCCCchhHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~   32 (313)
                      |++=|..||||||.++.+.-
T Consensus         5 I~~EG~dGsGKsTq~~~L~~   24 (205)
T 4hlc_A            5 ITFEGPEGSGKTTVINEVYH   24 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            55669999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	313
d1cipa1	121	a.66.1.1 (A:61-181) Transducin (alpha subunit), in	2e-52
d1tada1	121	a.66.1.1 (A:57-177) Transducin (alpha subunit), in	3e-50
d2bcjq1	117	a.66.1.1 (Q:67-183) Transducin (alpha subunit), in	7e-44
d1zcba1	126	a.66.1.1 (A:76-201) Transducin (alpha subunit), in	2e-43
d1zcaa1	122	a.66.1.1 (A:83-204) Transducin (alpha subunit), in	3e-43
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	2e-38
d1azta1	114	a.66.1.1 (A:88-201) Transducin (alpha subunit), in	8e-37
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	3e-33
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	3e-04
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	4e-29
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	4e-04
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	2e-27
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	6e-04
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-05
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	6e-04
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	8e-04

>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 121

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  165 bits (420), Expect = 2e-52
 Identities = 92/121 (76%), Positives = 105/121 (86%)

Query: 38  YSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASAAEEGDLT 97
           YS+EEC+QY+ VVYSN+IQS++AIIRAMG+LKIDFGD   AD ARQ F LA AAEEG +T
Sbjct: 1   YSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARADDARQLFVLAGAAEEGFMT 60

Query: 98  PDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVK 157
            +L  ++KRLW D GVQ CF+RSREYQLNDSAAYYLN LDRI+QPNYIPTQQDVLRTRVK
Sbjct: 61  AELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVK 120

Query: 158 T 158
           T
Sbjct: 121 T 121

>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]} Length = 121

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  160 bits (407), Expect = 3e-50
 Identities = 60/121 (49%), Positives = 86/121 (71%)

Query: 38  YSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASAAEEGDLT 97
           YS EEC ++  ++Y N++QS++AI+RAM  L I +GD    D AR+   +A   EEG + 
Sbjct: 1   YSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSARQDDARKLMHMADTIEEGTMP 60

Query: 98  PDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVK 157
            ++  +++RLW D G+Q CF R+ EYQLNDSA YYL+ L+R+  P Y+PT+QDVLR+RVK
Sbjct: 61  KEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRSRVK 120

Query: 158 T 158
           T
Sbjct: 121 T 121

>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 117

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  144 bits (364), Expect = 7e-44
 Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 1/118 (0%)

Query: 38  YSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASAAEEGDLT 97
           YS E+   +  +VY N   ++ A+IRAM  LKI +    N   A+    +    +     
Sbjct: 1   YSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREV-DVEKVSAFE 59

Query: 98  PDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTR 155
              V  +K LW+D G+Q C+ R REYQL+DS  YYLN LDR++ P+Y+PTQQDVLR R
Sbjct: 60  NPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVR 117

>d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  143 bits (362), Expect = 2e-43
 Identities = 40/125 (32%), Positives = 69/125 (55%), Gaps = 7/125 (5%)

Query: 38  YSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFF-------TLASA 90
           + +   E++RP +YSN I+ +  ++ A  +L I +GD+KN     +           A  
Sbjct: 1   FDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQG 60

Query: 91  AEEGDLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQD 150
             E  +    +  ++ LW D G+Q+ + R RE+QL +S  Y+L+ LD++  P+YIP+QQD
Sbjct: 61  MVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQD 120

Query: 151 VLRTR 155
           +L  R
Sbjct: 121 ILLAR 125

>d1zcaa1 a.66.1.1 (A:83-204) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  142 bits (360), Expect = 3e-43
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 38  YSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASAAE---EG 94
           + ++   ++R  ++ N ++    ++ A  +L I +   +N           + A    E 
Sbjct: 1   FDQKALLEFRDTIFDNILKGSRVLVDARDKLGIPWQHSENEKHGMFLMAFENKAGLPVEP 60

Query: 95  DLTPDLVILMKRLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRT 154
                 V  +  LW D G++  F R  E+QL +S  Y+L+ LDRI Q NY P++QD+L  
Sbjct: 61  ATFQLYVPALSALWRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQLNYFPSKQDILLA 120

Query: 155 R 155
           R
Sbjct: 121 R 121

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  133 bits (335), Expect = 2e-38
 Identities = 76/189 (40%), Positives = 99/189 (52%), Gaps = 40/189 (21%)

Query: 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDE 215
           V T+GI ET F    ++F MFDVGGQR ER+KWI CF  VTAIIF VA S Y+ V+ ED 
Sbjct: 32  VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 91

Query: 216 EMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKI--TKSPLTVCFPEYTD---- 269
           + NR+ E++ LF SI N++W    S+ILFLNK DL  EK+   KS +   FPE+      
Sbjct: 92  QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTP 151

Query: 270 ----------------------------------QKEIYTHFTCATDTSNIQFVFDAVTD 295
                                             +   Y HFTCA DT NI+ VF+   D
Sbjct: 152 EDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRD 211

Query: 296 VIIKANLKD 304
           +I + +L+ 
Sbjct: 212 IIQRMHLRQ 220

>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]} Length = 114

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  125 bits (316), Expect = 8e-37
 Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 3/110 (2%)

Query: 48  PVVYSNSIQSLMAIIRAMGQLK--IDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMK 105
             + +N  +++  I+ AM  L   ++  + +N        ++ +   + D  P+     K
Sbjct: 6   QDIKNNLKEAIETIVAAMSNLVPPVELANPENQFRVDYILSVMNV-PDFDFPPEFYEHAK 64

Query: 106 RLWSDQGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTR 155
            LW D+GV+ C+ RS EYQL D A Y+L+ +D I Q +Y+P+ QD+LR R
Sbjct: 65  ALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCR 114

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  119 bits (298), Expect = 3e-33
 Identities = 72/176 (40%), Positives = 100/176 (56%), Gaps = 24/176 (13%)

Query: 152 LRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVL 211
           +  +  T GI E  F  K++ FKM DVGGQRSERK+W  CF+ VT+I+F V+ S +D VL
Sbjct: 25  IHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL 84

Query: 212 AEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTD-- 269
            ED + NR+ ES+ +F++I N++ F + SIILFLNK DL +EK+    +   F E+    
Sbjct: 85  MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDP 144

Query: 270 ----------------------QKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLK 303
                                 Q+ +Y HFT A +T NI+ VF  V D I+  NLK
Sbjct: 145 HCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLK 200

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 21/28 (75%), Positives = 24/28 (85%)

Query: 9  REVKLLLLGAGESGKSTIVKQMKIIHET 36
          R VK+LLLGAGESGKST +KQM+IIH  
Sbjct: 1  RLVKILLLGAGESGKSTFLKQMRIIHGQ 28

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (270), Expect = 4e-29
 Identities = 90/171 (52%), Positives = 106/171 (61%), Gaps = 23/171 (13%)

Query: 156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDE 215
           V TTGIIE  F  + + F+M DVGGQRSER+KWIHCFE VT+I+F VALS YD VL E +
Sbjct: 30  VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 89

Query: 216 EMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTD------ 269
             NRM ES  LF +I    WF ++S+ILFLNK DL +EKI  S L   FPEY        
Sbjct: 90  NENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQ 149

Query: 270 -----------------QKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLK 303
                             K IY+HFTCATDT NI+FVF AV D I++ NLK
Sbjct: 150 AAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK 200

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 22/31 (70%), Positives = 26/31 (83%)

Query: 9  REVKLLLLGAGESGKSTIVKQMKIIHETGYS 39
          RE+KLLLLG GESGKST +KQM+IIH +G  
Sbjct: 1  RELKLLLLGTGESGKSTFIKQMRIIHGSGVP 31

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  104 bits (259), Expect = 2e-27
 Identities = 127/167 (76%), Positives = 133/167 (79%), Gaps = 23/167 (13%)

Query: 158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEM 217
            TGI+ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALS YD VLAEDEEM
Sbjct: 29  GTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEM 88

Query: 218 NRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYT--------- 268
           NRM ESMKLFDSICN+KWF DTSIILFLNK DLF+EKI KSPLT+C+PEY          
Sbjct: 89  NRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAA 148

Query: 269 --------------DQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN 301
                         D KEIYTHFTCATDT N+QFVFDAVTDVIIK N
Sbjct: 149 AYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 195

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.0 bits (87), Expect = 6e-04
 Identities = 28/29 (96%), Positives = 28/29 (96%)

Query: 9  REVKLLLLGAGESGKSTIVKQMKIIHETG 37
          REVKLLLLGAGESGKSTIVKQMKIIHE G
Sbjct: 1  REVKLLLLGAGESGKSTIVKQMKIIHEAG 29

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 10/144 (6%)

Query: 154 TRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAE 213
           T + T G      T+K++ F ++DVGGQ   R  W H + G   +IF V  +        
Sbjct: 39  TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCA-------- 90

Query: 214 DEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEI 273
             + +R+ E+ +    I N +   D  I++F NK DL                    +  
Sbjct: 91  --DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNW 148

Query: 274 YTHFTCATDTSNIQFVFDAVTDVI 297
           Y   +CAT    +      +T   
Sbjct: 149 YVQPSCATSGDGLYEGLTWLTSNY 172

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (87), Expect = 6e-04
 Identities = 25/162 (15%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 142 PNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC 201
            +YI T     + +             K +  +++D  GQ   R      + G   II  
Sbjct: 33  NDYISTIGVDFKIK-------TVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV 85

Query: 202 VALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLT 261
             ++  +S              +K++    +         +L  NK DL  +++ +  + 
Sbjct: 86  YDVTDQES-----------FNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVA 134

Query: 262 VCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLK 303
             F +      +    T A D++N++  F  +   I ++  +
Sbjct: 135 KEFADANK---MPFLETSALDSTNVEDAFLTMARQIKESMSQ 173

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (85), Expect = 8e-04
 Identities = 19/158 (12%), Positives = 43/158 (27%), Gaps = 22/158 (13%)

Query: 142 PNYIPTQQDVLRTRVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC 201
           P++I T     + +             K +  +++D  GQ   R      + G   II  
Sbjct: 29  PSFITTIGIDFKIK-------TVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 81

Query: 202 VALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLT 261
             ++   +     +    + E       +       D                 T+    
Sbjct: 82  YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD---------------METRVVTA 126

Query: 262 VCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK 299
                   +  I    + A +  N+  +F  +  +I +
Sbjct: 127 DQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 164

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	313
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	100.0
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	100.0
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.98
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.97
d1tada1	121	Transducin (alpha subunit), insertion domain {Cow	99.97
d1cipa1	121	Transducin (alpha subunit), insertion domain {Rat	99.97
d2bcjq1	117	Transducin (alpha subunit), insertion domain {Mous	99.96
d1zcaa1	122	Transducin (alpha subunit), insertion domain {Mous	99.96
d1zcba1	126	Transducin (alpha subunit), insertion domain {Mous	99.96
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.95
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.95
d1azta1	114	Transducin (alpha subunit), insertion domain {Cow	99.95
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.94
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.94
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.93
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.93
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.92
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.92
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.92
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.92
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.91
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.91
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.91
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.91
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.9
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.9
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.9
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.89
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.89
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.89
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.89
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.88
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.87
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.85
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.85
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.85
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.66
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.66
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.63
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.62
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.56
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.55
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.54
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.51
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.49
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.44
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.44
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.44
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.38
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.36
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.29
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.26
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.25
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.23
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.19
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.14
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.11
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.04
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.01
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.95
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.81
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.74
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	98.64
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.55
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	98.32
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.74
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.52
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.19
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.03
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.99
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.92
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.92
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	96.9
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	96.88
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.87
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.87
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.85
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.84
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.83
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.79
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.78
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.73
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	96.67
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.66
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.63
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.62
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.6
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.6
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	96.6
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.57
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.55
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.55
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.47
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.43
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.42
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.41
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.41
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.39
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.29
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	96.29
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.28
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.27
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.15
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.15
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.13
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.09
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.06
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.04
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.03
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.99
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.86
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.84
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	95.84
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.55
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	95.53
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.52
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.51
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.46
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.39
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.25
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.25
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.24
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.24
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.12
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.12
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.1
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	94.97
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	94.92
d1g2912	240	Maltose transport protein MalK, N-terminal domain	94.88
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	94.86
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	94.83
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	94.65
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	94.63
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.59
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	94.5
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	94.42
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	94.28
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	94.22
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	94.11
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	94.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	93.98
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	93.89
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	93.77
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	93.74
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	93.73
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	93.7
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	93.69
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	93.69
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	93.63
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	93.52
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.44
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	93.42
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	93.38
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	93.35
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	93.34
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	93.27
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	93.18
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	93.16
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.07
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	93.03
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	92.91
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	92.85
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	92.81
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.72
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	92.68
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.58
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	92.44
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	92.44
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	92.26
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	92.21
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	92.17
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	92.04
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	92.01
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	92.0
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	91.98
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	91.97
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.93
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	91.76
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	91.72
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	91.71
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	91.66
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	91.63
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	91.57
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	91.46
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	91.38
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	91.35
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	91.29
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	91.26
d2qy9a2	211	GTPase domain of the signal recognition particle r	90.93
d1vmaa2	213	GTPase domain of the signal recognition particle r	90.87
d1okkd2	207	GTPase domain of the signal recognition particle r	90.81
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	90.71
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	90.62
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	90.38
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	90.28
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	90.15
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	89.98
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	89.97
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	89.85
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	89.67
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	89.63
d1j8yf2	211	GTPase domain of the signal sequence recognition p	89.57
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	89.37
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	89.2
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	88.47
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	88.44
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	88.25
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	88.23
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	88.22
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	87.88
d1xpua3	289	Transcription termination factor Rho, ATPase domai	87.56
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	87.53
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	87.34
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	87.24
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	86.81
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	86.65
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	86.25
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	85.83
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	85.73
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	85.67
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	85.45
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	84.8
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	83.91
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	83.09
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	82.79
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	82.59
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	82.52
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	82.52
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	81.79
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	81.73
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	80.88
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	80.7

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.3e-36  Score=256.83  Aligned_cols=149  Identities=50%  Similarity=0.901  Sum_probs=139.0

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|+.+..++++++.+++||+|||+.+|++|.+||+++++++||+|++++++...++...+++.++..+|+.+++++.
T Consensus        32 ~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~  111 (221)
T d1azta2          32 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW  111 (221)
T ss_dssp             CCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGG
T ss_pred             CCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChh
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEeecCCcccccccC--CcccccCcCCC--------------------------------------CCCCeEE
Q psy8318         236 FMDTSIILFLNKNDLFQEKITK--SPLTVCFPEYT--------------------------------------DQKEIYT  275 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~--~~l~~~f~~~~--------------------------------------~~~~~~~  275 (313)
                      +.++|++|++||+|++.+|+..  .++.++||+|+                                      ..+.+++
T Consensus       112 ~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~  191 (221)
T d1azta2         112 LRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYP  191 (221)
T ss_dssp             GSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEE
T ss_pred             hCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceee
Confidence            9999999999999999988754  46788888874                                      2356899


Q ss_pred             EEeecccCcCHHHHHHHHHHHHHHhhhhh
Q psy8318         276 HFTCATDTSNIQFVFDAVTDVIIKANLKD  304 (313)
Q Consensus       276 ~~tSA~~~~~v~~~f~~i~~~i~~~~~~~  304 (313)
                      |+|||+|+.||+.+|..+.+.|++++|++
T Consensus       192 h~T~A~Dt~ni~~vf~~v~d~I~~~~l~~  220 (221)
T d1azta2         192 HFTCAVDTENIRRVFNDCRDIIQRMHLRQ  220 (221)
T ss_dssp             EECCTTCHHHHHHHHHTTHHHHHHHHHTT
T ss_pred             eecceeccHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999986

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-34  Score=241.41  Aligned_cols=149  Identities=48%  Similarity=0.834  Sum_probs=131.5

Q ss_pred             eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      +.||+|+....+++++.++++||++||+.++..|.+++++++++++++|.++++....++...++++++..+|.++++++
T Consensus        28 ~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  107 (200)
T d1zcba2          28 QDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR  107 (200)
T ss_dssp             CCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred             CCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhCh
Confidence            35889999999999999999999999999999999999999999999999999999999988999999999999999999


Q ss_pred             CCCCCcEEEEeecCCcccccccCCcccccCcCCC------------------------CCCCeEEEEeecccCcCHHHHH
Q psy8318         235 WFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYT------------------------DQKEIYTHFTCATDTSNIQFVF  290 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~------------------------~~~~~~~~~tSA~~~~~v~~~f  290 (313)
                      ...++|++|++||+|++.+++...++.++||++.                        .++.+++|+|||+|++||+++|
T Consensus       108 ~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf  187 (200)
T d1zcba2         108 VFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVF  187 (200)
T ss_dssp             GGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHH
T ss_pred             hhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHH
Confidence            8999999999999999998888889999998875                        2456899999999999999999


Q ss_pred             HHHHHHHHHhhhh
Q psy8318         291 DAVTDVIIKANLK  303 (313)
Q Consensus       291 ~~i~~~i~~~~~~  303 (313)
                      +.+.+.|++++|+
T Consensus       188 ~~v~d~i~~~~l~  200 (200)
T d1zcba2         188 RDVKDTILHDNLK  200 (200)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999999875

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=3e-32  Score=227.99  Aligned_cols=148  Identities=61%  Similarity=0.982  Sum_probs=134.7

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|+....+..+...+++||++||+.++..|.++|++++++++|+|+++++.....+...+++.++...|..+++++.
T Consensus        30 ~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~  109 (200)
T d2bcjq2          30 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW  109 (200)
T ss_dssp             CCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGG
T ss_pred             CceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhh
Confidence            57889999999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCcCCC-----------------------CCCCeEEEEeecccCcCHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPEYT-----------------------DQKEIYTHFTCATDTSNIQFVFDA  292 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~-----------------------~~~~~~~~~tSA~~~~~v~~~f~~  292 (313)
                      ..++|+++++||+|++..+.....+..++|++.                       .++.+++|+|||++|+||+++|+.
T Consensus       110 ~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~  189 (200)
T d2bcjq2         110 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA  189 (200)
T ss_dssp             GSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred             ccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHH
Confidence            999999999999999988777666666665542                       356789999999999999999999


Q ss_pred             HHHHHHHhhhh
Q psy8318         293 VTDVIIKANLK  303 (313)
Q Consensus       293 i~~~i~~~~~~  303 (313)
                      |.+.|++++|+
T Consensus       190 i~~~I~~~nl~  200 (200)
T d2bcjq2         190 VKDTILQLNLK  200 (200)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhcC
Confidence            99999988874

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=1.1e-31  Score=223.70  Aligned_cols=145  Identities=88%  Similarity=1.398  Sum_probs=131.9

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      ||+|+.+..++..+..+++||++||+.++.+|..||++++++++|+|+++.+.........+.+.++...|..+++++..
T Consensus        28 ~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~  107 (195)
T d1svsa1          28 AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF  107 (195)
T ss_dssp             CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred             CCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhccccc
Confidence            56788888889999999999999999999999999999999999999999999888888889999999999999999888


Q ss_pred             CCCcEEEEeecCCcccccccCCcccccCcCCC-----------------------CCCCeEEEEeecccCcCHHHHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYT-----------------------DQKEIYTHFTCATDTSNIQFVFDAV  293 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~-----------------------~~~~~~~~~tSA~~~~~v~~~f~~i  293 (313)
                      .++|+++++||+|++.+++...++..+||+..                       ..+++++|+|||++|.||+++|+.|
T Consensus       108 ~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v  187 (195)
T d1svsa1         108 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV  187 (195)
T ss_dssp             TTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHH
Confidence            99999999999999988888888877776653                       3467899999999999999999999


Q ss_pred             HHHHHHhh
Q psy8318         294 TDVIIKAN  301 (313)
Q Consensus       294 ~~~i~~~~  301 (313)
                      .+.|+++|
T Consensus       188 ~~~il~~n  195 (195)
T d1svsa1         188 TDVIIKNN  195 (195)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99998764

>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2.7e-32  Score=210.01  Aligned_cols=121  Identities=50%  Similarity=0.947  Sum_probs=115.6

Q ss_pred             CChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHhHHHHHHhhhcccCCCCCCHHHHHHHHHhhcChhHHHHH
Q psy8318          38 YSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCF  117 (313)
Q Consensus        38 ~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~lw~d~~i~~~~  117 (313)
                      |+++|+..|+++||.|++++|+.|+++|+.+|+++++++++..+..++.........+++++++++|+.||+|++||.||
T Consensus         1 Fs~eE~~~~~~~I~~Nii~~m~~li~a~~~l~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~i~~LW~D~~iq~~~   80 (121)
T d1tada1           1 YSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSARQDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACF   80 (121)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSTTHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHCHHHHHHH
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHhhccccCCCCCHHHHHHHHHHhCCHHHHHHH
Confidence            78999999999999999999999999999999999999999999999887665566789999999999999999999999


Q ss_pred             hhccccccccCHHHHHhccccccCCCCccccccccceeeee
Q psy8318         118 HRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKT  158 (313)
Q Consensus       118 ~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~~T  158 (313)
                      .|+++|+|+||+.|||++++||++++|+||++|+|++|.+|
T Consensus        81 ~r~~ef~L~Dsa~YF~~~l~RI~~~~Y~PT~qDiLr~R~~T  121 (121)
T d1tada1          81 DRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRSRVKT  121 (121)
T ss_dssp             HTGGGSCCCTTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCC
T ss_pred             HhhhccccCcchHHHHHHHHHHcCCCCCCCHHHHhhhcCCC
Confidence            99999999999999999999999999999999999999987

>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=1.4e-31  Score=206.25  Aligned_cols=121  Identities=76%  Similarity=1.166  Sum_probs=114.0

Q ss_pred             CChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHhHHHHHHhhhcccCCCCCCHHHHHHHHHhhcChhHHHHH
Q psy8318          38 YSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCF  117 (313)
Q Consensus        38 ~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~lw~d~~i~~~~  117 (313)
                      |+++|+..|+++||.|++.+|+.|+++|+.++++++++.++..+..+...........+++++++.|+.||+|++||.||
T Consensus         1 Fs~eE~~~~~~~I~~Ni~~~~~~ll~a~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~LW~D~~Iq~~~   80 (121)
T d1cipa1           1 YSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACF   80 (121)
T ss_dssp             CCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTCCCSSTTHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHCHHHHHHH
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHhCCHHHHHHH
Confidence            78999999999999999999999999999999999999998888877666555556789999999999999999999999


Q ss_pred             hhccccccccCHHHHHhccccccCCCCccccccccceeeee
Q psy8318         118 HRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRVKT  158 (313)
Q Consensus       118 ~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~~T  158 (313)
                      .|+++|+|+||+.|||++++||++++|+||++|||++|.+|
T Consensus        81 ~r~~ef~L~Dsa~YFl~~l~RI~~~dY~PT~qDILr~R~~T  121 (121)
T d1cipa1          81 NRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKT  121 (121)
T ss_dssp             TTGGGSCCCTTHHHHHTTHHHHTSTTCCCCHHHHHTCCCCC
T ss_pred             HhhhcccCCCChHHHHHHHHHHcCCCCCCCHHHHhHhcCCC
Confidence            99999999999999999999999999999999999999987

>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.2e-30  Score=198.04  Aligned_cols=117  Identities=43%  Similarity=0.744  Sum_probs=109.6

Q ss_pred             CChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHhHHHHHHhhhcccCCCCCCHHHHHHHHHhhcChhHHHHH
Q psy8318          38 YSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCF  117 (313)
Q Consensus        38 ~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~lw~d~~i~~~~  117 (313)
                      |+++|+..|++.|+.|++++|+.|+++|+.+|+++.+++++..+..++.... .....+++++++.|+.||+||+||.||
T Consensus         1 fs~eE~~~~~~~I~~Nii~~m~~ll~a~~~l~i~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~i~~LW~D~~iq~~~   79 (117)
T d2bcjq1           1 YSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDV-EKVSAFENPYVDAIKSLWNDPGIQECY   79 (117)
T ss_dssp             CCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTCCCSSTTHHHHHHHHHTSCS-TTCCCCCHHHHHHHHHHHHSHHHHHHH
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccc-ccccccCHHHHHHHHHHHcCHHHHHHH
Confidence            7899999999999999999999999999999999999999999999877633 233578999999999999999999999


Q ss_pred             hhccccccccCHHHHHhccccccCCCCcccccccccee
Q psy8318         118 HRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTR  155 (313)
Q Consensus       118 ~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~  155 (313)
                      .|+++|+|+||+.|||++++||++++|+||.+|||++|
T Consensus        80 ~r~~ef~L~Dsa~YFl~~l~RI~~~dY~PT~qDILr~R  117 (117)
T d2bcjq1          80 DRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVR  117 (117)
T ss_dssp             HTTTSSCCCTTHHHHHTTHHHHTSTTCCCCHHHHHHCC
T ss_pred             HHhhhhccCcccHHHHHHHHHHcCCCCCCCHHHhhhcC
Confidence            99999999999999999999999999999999999986

>d1zcaa1 a.66.1.1 (A:83-204) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.7e-30  Score=199.10  Aligned_cols=119  Identities=27%  Similarity=0.517  Sum_probs=108.5

Q ss_pred             CChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHhHHHHHHhhhcccCC---CCCCHHHHHHHHHhhcChhHH
Q psy8318          38 YSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASAAEE---GDLTPDLVILMKRLWSDQGVQ  114 (313)
Q Consensus        38 ~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~lw~d~~i~  114 (313)
                      |+++|+..|++.||.|++++|+.|+++|+.+++++++++++..+..+.........   ..++++++++|+.||+|++||
T Consensus         1 Fs~~E~~~~r~~I~~Nii~~~~~Li~am~~l~i~~~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~Iq   80 (122)
T d1zcaa1           1 FDQKALLEFRDTIFDNILKGSRVLVDARDKLGIPWQHSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIR   80 (122)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSGGGHHHHHHHHTCCCTTCCCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcccccCCCCCccchHHHHHHHHHHHCCHHHH
Confidence            78999999999999999999999999999999999999999999888776443221   234568899999999999999


Q ss_pred             HHHhhccccccccCHHHHHhccccccCCCCccccccccceee
Q psy8318         115 HCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRV  156 (313)
Q Consensus       115 ~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~  156 (313)
                      +||.|+++|+|+||+.|||++++||++++|+||++|||++|.
T Consensus        81 ~~~~r~~ef~L~Dsa~YFl~~l~RI~~~dYiPT~qDILr~R~  122 (122)
T d1zcaa1          81 EAFSRRSEFQLGESVKYFLDNLDRIGQLNYFPSKQDILLARK  122 (122)
T ss_dssp             HHHHTGGGSCCCTHHHHHHHTHHHHSSTTCCCCHHHHHHCCC
T ss_pred             HHHHhccccccccchHHHHHHHHHHcCCCCCCCHHHHHHhcC
Confidence            999999999999999999999999999999999999999974

>d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=7.5e-30  Score=197.96  Aligned_cols=119  Identities=33%  Similarity=0.689  Sum_probs=108.8

Q ss_pred             CChHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHhHHHHHHhhhcc-------cCCCCCCHHHHHHHHHhhcC
Q psy8318          38 YSKEECEQYRPVVYSNSIQSLMAIIRAMGQLKIDFGDHKNADCARQFFTLASA-------AEEGDLTPDLVILMKRLWSD  110 (313)
Q Consensus        38 ~~~~e~~~~~~~I~~N~~~~~~~li~~~~~~~i~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~lw~d  110 (313)
                      |+++||..|+++||.|++++|+.|+.+|+.+++++++++++..+..+......       .....+++++++.|+.||+|
T Consensus         1 Fs~~Er~~~r~~I~~Nii~~m~~ll~a~~~l~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~i~~LW~D   80 (126)
T d1zcba1           1 FDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWED   80 (126)
T ss_dssp             CCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCSSGGGHHHHHHHHTSCSSSHHHHTTCCCHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHhcccccccccccccccccCHHHHHHHHHHhCC
Confidence            78999999999999999999999999999999999999999998888765321       11245778999999999999


Q ss_pred             hhHHHHHhhccccccccCHHHHHhccccccCCCCccccccccceee
Q psy8318         111 QGVQHCFHRSREYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTRV  156 (313)
Q Consensus       111 ~~i~~~~~~~~~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~~  156 (313)
                      ++||.||.|+++|+|+||+.|||++++||+.++|+||++|||++|.
T Consensus        81 ~~iq~~~~r~~ef~L~Dsa~YFl~~l~RI~~~dYiPT~qDILr~Rk  126 (126)
T d1zcba1          81 SGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARR  126 (126)
T ss_dssp             HHHHHHHHTGGGSCCCTTHHHHHTTHHHHTSTTCCCCHHHHHHCCC
T ss_pred             HHHHHHHHHhhhhcCCcchHHHHHHHHHHcCCCCCCCHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.95  E-value=7.9e-28  Score=195.43  Aligned_cols=133  Identities=20%  Similarity=0.307  Sum_probs=110.8

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||.|+....+..+++.+.+||++|++.++..|..++.+++++++|+|+++          ...+.++..++...+....
T Consensus        31 ~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d----------~~~~~~~~~~~~~~~~~~~  100 (165)
T d1ksha_          31 SPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------RQRMQDCQRELQSLLVEER  100 (165)
T ss_dssp             CCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGG
T ss_pred             cceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeeccc----------chhHHHHHHhhhhhhhhcc
Confidence            578888888899999999999999999999999999999999999999999          7899999999999888777


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCc-CCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFP-EYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~-~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      ..+.|++||+||+|+.... ...+....+. +....+++.+++|||++|+||.++|+||.+.+..
T Consensus       101 ~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         101 LAGATLLIFANKQDLPGAL-SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             GTTCEEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             cCCCceEEEEecccccccc-CHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHc
Confidence            7889999999999987532 2222222211 1113457889999999999999999999998754

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.95  E-value=5.2e-28  Score=196.53  Aligned_cols=131  Identities=19%  Similarity=0.293  Sum_probs=109.0

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||+|+....++.+++.+.+||+||++.++..|..++.+++++++|+|+++          ..++.++..++..+++...
T Consensus        32 ~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~  101 (164)
T d1zd9a1          32 IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAAD----------QEKIEASKNELHNLLDKPQ  101 (164)
T ss_dssp             CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGG
T ss_pred             cccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhccccccc----------ccccchhhhhhhhhhhhhc
Confidence            467788888889999999999999999999999999999999999999998          7889999999999998877


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCcC-CCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPE-YTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~-~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ..++|++|++||+|+.... ...++.+.+.. ....+.+.+++|||++|+||.++|+||.+.+
T Consensus       102 ~~~~pi~lv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         102 LQGIPVLVLGNKRDLPGAL-DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             GTTCCEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             ccCCcEEEEEeccccchhh-hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHcc
Confidence            8899999999999987531 22222222211 1134678899999999999999999998753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.95  E-value=4.8e-28  Score=200.03  Aligned_cols=135  Identities=22%  Similarity=0.326  Sum_probs=109.3

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||.|........+++.+.+||++|++.++..|..++.+++++++|+|+++          ..++.++..++...+....
T Consensus        46 ~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d----------~~s~~~~~~~l~~~~~~~~  115 (182)
T d1moza_          46 KPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTD----------KDRMSTASKELHLMLQEEE  115 (182)
T ss_dssp             CSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTC----------TTTHHHHHHHHHHHTTSST
T ss_pred             ccccceEEEEEeeCCEEEEEEecccccccchhHHhhhccceeEEEEeeecc----------cccchhHHHHHHHHHHhhc
Confidence            467788888888899999999999999999999999999999999999999          8899999999999888877


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCcC-CCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFPE-YTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~-~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      ..+.|++|++||+|+... ....++.+.+.. ....+++.+++|||++|+||.++|+||.+.+.++.
T Consensus       116 ~~~~piliv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~~~~  181 (182)
T d1moza_         116 LQDAALLVFANKQDQPGA-LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             TSSCEEEEEEECTTSTTC-CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             cCCcceEEEEEeeccccc-cCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            788999999999998653 233333332221 11446788999999999999999999999987754

>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=3.7e-28  Score=183.18  Aligned_cols=111  Identities=32%  Similarity=0.595  Sum_probs=101.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcC--CCcCCCCCHhHHHHHHhhhcccCCCCCCHHHHHHHHHhhcChhHHHHHhhcc
Q psy8318          44 EQYRPVVYSNSIQSLMAIIRAMGQLK--IDFGDHKNADCARQFFTLASAAEEGDLTPDLVILMKRLWSDQGVQHCFHRSR  121 (313)
Q Consensus        44 ~~~~~~I~~N~~~~~~~li~~~~~~~--i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~lw~d~~i~~~~~~~~  121 (313)
                      +...+.||.|++++|+.|++||+.++  +++++|+++..+..++......+ ..+++++++.|+.||+|++||+||.|++
T Consensus         2 ~~~i~~I~~Nii~sm~~li~Am~~L~~~i~~~~~~n~~~~~~i~~~~~~~~-~~~~~e~~~~i~~LW~D~giq~~~~r~~   80 (114)
T d1azta1           2 ATKVQDIKNNLKEAIETIVAAMSNLVPPVELANPENQFRVDYILSVMNVPD-FDFPPEFYEHAKALWEDEGVRACYERSN   80 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCSSGGGHHHHHHHHHTTTCSS-CCCCHHHHHHHHHHHHSHHHHHHHHTGG
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHhcccccC-cccCHHHHHHHHHHhCCHHHHHHHHhcc
Confidence            45678899999999999999999995  66789999999999988754433 4689999999999999999999999999


Q ss_pred             ccccccCHHHHHhccccccCCCCcccccccccee
Q psy8318         122 EYQLNDSAAYYLNALDRISQPNYIPTQQDVLRTR  155 (313)
Q Consensus       122 ~~~~~~~~~yfl~~~~ri~~~~y~Pt~~dil~~~  155 (313)
                      +|+|+||+.|||++++||++++|.||.+|+|++|
T Consensus        81 e~~L~Dsa~Yfl~~i~RI~~~dY~PT~qDiLr~R  114 (114)
T d1azta1          81 EYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCR  114 (114)
T ss_dssp             GTTCCTTHHHHHTTHHHHHSTTCCCCHHHHHHCC
T ss_pred             ccCCCCchHHHHHHHHHHcCCCCCCCHhHhhccC
Confidence            9999999999999999999999999999999986

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.94  E-value=4e-27  Score=192.94  Aligned_cols=130  Identities=25%  Similarity=0.442  Sum_probs=110.2

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||.|+.........+.+.+||++|+..++..|..++.+++++|||+|+++          ..++.++..++...++++.
T Consensus        41 ~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~----------~~~~~~~~~~l~~~~~~~~  110 (173)
T d1e0sa_          41 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDRE  110 (173)
T ss_dssp             EEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTC----------GGGHHHHHHHHHHHHTSGG
T ss_pred             cceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEEEeccc----------chhHHHHHHHHHHHhhhcc
Confidence            588898888888899999999999999999999999999999999999998          7899999999999988877


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccC--cCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCF--PEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f--~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ..+.|++|++||+|+..+ ....++...+  ... ..+++.+++|||++|+||.++|+||.+.+
T Consensus       111 ~~~~piiiv~NK~Dl~~~-~~~~~i~~~~~~~~~-~~~~~~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         111 MRDAIILIFANKQDLPDA-MKPHEIQEKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             GTTCEEEEEEECTTSTTC-CCHHHHHHHTTGGGC-CSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             cccceeeeeeeccccccc-ccHHHHHHHHHHHHH-HhCCCEEEEeeCCCCcCHHHHHHHHHHhc
Confidence            888999999999998753 2222222222  112 44678899999999999999999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.94  E-value=5.2e-27  Score=192.47  Aligned_cols=131  Identities=18%  Similarity=0.281  Sum_probs=108.6

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||.|+....+..+++.+.+||++|++.++..|..++.+++++|+|+|+++          ..++.++..++..+.....
T Consensus        45 ~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d----------~~s~~~~~~~~~~~~~~~~  114 (176)
T d1fzqa_          45 TPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSAD----------RKRFEETGQELTELLEEEK  114 (176)
T ss_dssp             EEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTC----------GGGHHHHHHHHHHHTTCGG
T ss_pred             eeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEeecccc----------ccchhhhhhhhhhhhhhhc
Confidence            577888888889999999999999999999999999999999999999999          7899999999998887766


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCc-CCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFP-EYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~-~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ..++|++|++||+|+..+ .....+.+.+. .+...+.+.+++|||++|+||+++|+||++.|
T Consensus       115 ~~~~pillv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~i  176 (176)
T d1fzqa_         115 LSCVPVLIFANKQDLLTA-APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV  176 (176)
T ss_dssp             GTTCCEEEEEECTTSTTC-CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             cCCCeEEEEEEecccccc-ccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHhcC
Confidence            778999999999998753 22222222221 11134678899999999999999999998753

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.9e-26  Score=187.99  Aligned_cols=119  Identities=18%  Similarity=0.136  Sum_probs=89.7

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+.+||++|++.++..|..|+++++++|+|+|+++          ..+++++..|+..+.......++|++||+||+|
T Consensus        47 ~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~----------~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~D  116 (168)
T d2gjsa1          47 EASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTD----------KGSFEKASELRVQLRRARQTDDVPIILVGNKSD  116 (168)
T ss_dssp             EEEEEEEECC-------CHHHHHTSCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHCC--CCCEEEEEECTT
T ss_pred             ccceeeeecccccccceecccchhhhhhhceeccccc----------cccccccccccchhhcccccccceEEEeecccc
Confidence            4788999999999999999999999999999999999          889999999998887655556789999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      +..++.........+.   ...++.+++|||++|.||.++|+++++.++.+.
T Consensus       117 l~~~~~v~~~~~~~~~---~~~~~~~~e~Sak~~~~v~~~f~~l~~~i~~~~  165 (168)
T d2gjsa1         117 LVRSREVSVDEGRACA---VVFDCKFIETSAALHHNVQALFEGVVRQIRLRR  165 (168)
T ss_dssp             CGGGCCSCHHHHHHHH---HHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             hhhhcchhHHHHHHHH---HhcCCEEEEEeCCCCcCHHHHHHHHHHHHHHHh
Confidence            8765322221122222   224678999999999999999999999887653

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.4e-26  Score=187.85  Aligned_cols=128  Identities=17%  Similarity=0.191  Sum_probs=101.0

Q ss_pred             eeecceeEEEEEe----cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318         156 VKTTGIIETHFTF----KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC  231 (313)
Q Consensus       156 ~~T~g~~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~  231 (313)
                      .||+|+......+    ..+.+.+||++|+..++..|..++++++++++|+|+++          ..++++...|+..+.
T Consensus        33 ~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~Sf~~~~~~~~~~~  102 (170)
T d1i2ma_          33 VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS----------RVTYKNVPNWHRDLV  102 (170)
T ss_dssp             EEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETTS----------GGGGTTHHHHHHHHH
T ss_pred             ccceeccccccccccccccccccccccccccccceecchhcccccchhhcccccc----------ccccchhHHHHHHHh
Confidence            4666754433333    34789999999999999999999999999999999999          778888888887775


Q ss_pred             hCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      ..  ..++|++||+||+|+..+....... . +.   ...++.+++|||++|.||.++|++|.+.|+++
T Consensus       103 ~~--~~~~piilvgnK~Dl~~~~~~~~~~-~-~~---~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~  164 (170)
T d1i2ma_         103 RV--CENIPIVLCGNKVDIKDRKVKAKSI-V-FH---RKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  164 (170)
T ss_dssp             HH--HCSCCEEEEEECCCCSCSCCTTTSH-H-HH---SSCSSEEEEEBTTTTBTTTHHHHHHHHHHHTC
T ss_pred             hc--cCCCceeeecchhhhhhhhhhhHHH-H-HH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHccC
Confidence            43  2479999999999987654333222 1 11   34678899999999999999999999988753

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.5e-26  Score=187.36  Aligned_cols=118  Identities=18%  Similarity=0.176  Sum_probs=96.5

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+.+||++|++.++..|..++++++++|+|+|+++          ..++.....|+..+.......++|++||+||+|
T Consensus        53 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~D  122 (173)
T d2fn4a1          53 PARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAIND----------RQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD  122 (173)
T ss_dssp             EEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGG
T ss_pred             eeeeeccccccccccccccchhhccceeeeeeccccc----------ccccchhhhhhHHHHHHhccCCCceEEEEEeec
Confidence            3678999999999999999999999999999999999          889998888888876654556789999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +..++....+....+.   ...++.+++|||++|.||.++|++|.+.+.+.
T Consensus       123 l~~~~~~~~~~~~~~~---~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~k~  170 (173)
T d2fn4a1         123 LESQRQVPRSEASAFG---ASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY  170 (173)
T ss_dssp             GGGGCCSCHHHHHHHH---HHTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             hhhccccchhhhhHHH---HhcCCEEEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            8765322222222232   22567899999999999999999999988654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.1e-26  Score=186.49  Aligned_cols=117  Identities=15%  Similarity=0.109  Sum_probs=96.3

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ..+.+.+||++|+..++..|..|+++++++|+|+|+++          ..++++...|+..+.......++|++||+||+
T Consensus        49 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~  118 (167)
T d1c1ya_          49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITA----------QSTFNDLQDLREQILRVKDTEDVPMILVGNKC  118 (167)
T ss_dssp             CEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHCCSCCCEEEEEECT
T ss_pred             eEEEeccccccCcccccccccccccccceeEEeeeccc----------hhhhHhHHHHHHHHHHhcCCCCCeEEEEEEec
Confidence            44789999999999999999999999999999999999          89999999999888765555679999999999


Q ss_pred             CcccccccCCc-ccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         249 DLFQEKITKSP-LTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       249 Dl~~~k~~~~~-l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      |+..+.....+ ......++   .++.+++|||++|+||.++|++|.+.|.
T Consensus       119 Dl~~~~~~~~~~~~~~~~~~---~~~~~~e~Sak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         119 DLEDERVVGKEQGQNLARQW---CNCAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             TCGGGCCSCHHHHHHHHHHT---TSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             CcccccccchhHHHHHHHHh---CCCEEEEEcCCCCcCHHHHHHHHHHHhc
Confidence            98765433222 22222223   4678899999999999999999998773

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.6e-26  Score=184.53  Aligned_cols=123  Identities=16%  Similarity=0.197  Sum_probs=96.4

Q ss_pred             EEEEec--CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318         164 THFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI  241 (313)
Q Consensus       164 ~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi  241 (313)
                      ..+.+.  .+++.+|||+||+.++..|..++++++++++|+|+++          ..++.....++..+... ....+|+
T Consensus        45 ~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~~~  113 (171)
T d2ew1a1          45 KTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITC----------EESFRCLPEWLREIEQY-ASNKVIT  113 (171)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEE
T ss_pred             EEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEeeeccc----------chhhhhhhhhhhhhccc-ccccccE
Confidence            344443  4778999999999999999999999999999999998          78888888888777543 3356899


Q ss_pred             EEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         242 ILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       242 ilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +|++||+|+..+.....+....|++   ..++.+++|||++|.||.++|.+|++.++..
T Consensus       114 ilvgnK~D~~~~~~v~~~~~~~~~~---~~~~~~~~~SAktg~gV~e~f~~l~~~l~~~  169 (171)
T d2ew1a1         114 VLVGNKIDLAERREVSQQRAEEFSE---AQDMYYLETSAKESDNVEKLFLDLACRLISE  169 (171)
T ss_dssp             EEEEECGGGGGGCSSCHHHHHHHHH---HHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEEEeecccccccchhhhHHHHHHH---hCCCEEEEEccCCCCCHHHHHHHHHHHHHHh
Confidence            9999999987643222222222332   2456789999999999999999999888754

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.93  E-value=2.9e-26  Score=187.01  Aligned_cols=116  Identities=17%  Similarity=0.181  Sum_probs=92.4

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+.+||++|++.+..++..++++++++|+|+|+++          ..+++....|++.+.......++|++||+||+|
T Consensus        51 ~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~D  120 (168)
T d1u8za_          51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE----------MESFAATADFREQILRVKEDENVPFLLVGNKSD  120 (168)
T ss_dssp             EEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGG
T ss_pred             cccccccccccccchhhhhhhcccccceeEEEeeccc----------hhhhhhHHHHHHHHHHhhCCCCCcEEEEecccc
Confidence            4788999999999999999999999999999999999          888999888988887655556899999999999


Q ss_pred             cccccc-cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         250 LFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       250 l~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      +...+. ...+..+ +.   ...++.+++|||++|.||+++|++|.+.|+.
T Consensus       121 l~~~~~v~~~~~~~-~~---~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         121 LEDKRQVSVEEAKN-RA---DQWNVNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             GGGGCCSCHHHHHH-HH---HHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             ccccccccHHHHHH-HH---HHcCCeEEEEcCCCCcCHHHHHHHHHHHHHC
Confidence            876432 2222222 22   2246788999999999999999999988764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=7.3e-26  Score=184.66  Aligned_cols=116  Identities=18%  Similarity=0.254  Sum_probs=92.6

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+++|||+|++.++.+|..++++++++|+|+|+++          ..++.....++..+.. ....+.|+++++||+|
T Consensus        53 ~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~----------~~s~~~~~~~~~~~~~-~~~~~~~iivv~nK~D  121 (169)
T d3raba_          53 RIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN----------EESFNAVQDWSTQIKT-YSWDNAQVLLVGNKCD  121 (169)
T ss_dssp             EEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHH-HCCSCCEEEEEEECTT
T ss_pred             eEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECcc----------chhhhhhhhhhhhhhc-ccCCcceEEEEEeecc
Confidence            4789999999999999999999999999999999998          7778777777766543 3345789999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      +...+....+....+.   ...++.+++|||++|.||.++|++|.+.|++
T Consensus       122 ~~~~~~v~~~~~~~~~---~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~e  168 (169)
T d3raba_         122 MEDERVVSSERGRQLA---DHLGFEFFEASAKDNINVKQTFERLVDVICE  168 (169)
T ss_dssp             CGGGCCSCHHHHHHHH---HHHTCEEEECBTTTTBSHHHHHHHHHHHHHT
T ss_pred             cccccccchhhhHHHH---HHcCCEEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            8765432222222232   2246789999999999999999999998864

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=8.7e-26  Score=184.28  Aligned_cols=117  Identities=17%  Similarity=0.141  Sum_probs=95.7

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ..+.+.+||++|++.+...+..|+++++++++|+|+++          ..++.....|+..+.+.....+.|++|++||+
T Consensus        50 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d----------~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~  119 (169)
T d1x1ra1          50 QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTD----------KASFEHVDRFHQLILRVKDRESFPMILVANKV  119 (169)
T ss_dssp             EEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTSSCCCEEEEEECT
T ss_pred             ccccccccccccccccccchhhhhhhccEEEEeccccc----------chhhhccchhhHHHHhhccccCccEEEEeccc
Confidence            44789999999999999999999999999999999999          88999988888888765445678999999999


Q ss_pred             Ccccccc-cCCcccccCcCCCCCCCeEEEEeecccCc-CHHHHHHHHHHHHHH
Q psy8318         249 DLFQEKI-TKSPLTVCFPEYTDQKEIYTHFTCATDTS-NIQFVFDAVTDVIIK  299 (313)
Q Consensus       249 Dl~~~k~-~~~~l~~~f~~~~~~~~~~~~~tSA~~~~-~v~~~f~~i~~~i~~  299 (313)
                      |+...+. ..++..+ |.   ...++.+++|||+++. ||.++|.++++.|++
T Consensus       120 Dl~~~~~v~~e~~~~-~~---~~~~~~~~e~Sak~~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         120 DLMHLRKVTRDQGKE-MA---TKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             TCSTTCCSCHHHHHH-HH---HHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             chhhhceeehhhHHH-HH---HHcCCEEEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence            9876532 2222222 22   2346789999999986 999999999998875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-25  Score=184.56  Aligned_cols=116  Identities=16%  Similarity=0.231  Sum_probs=90.8

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      +.+.+++||++|++.++..|..||++++++|+|+|+++          ..++++...++...+... ..++|++|++||+
T Consensus        48 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~Sf~~~~~~~~~~~~~~-~~~~piilvgnK~  116 (177)
T d1kmqa_          48 KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKHF-CPNVPIILVGNKK  116 (177)
T ss_dssp             EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH-STTSCEEEEEECG
T ss_pred             cceeeeccccCccchhcccchhhcccchhhhhhcccch----------hHHHHHHHHHHHHHHHHh-CCCCceEEeeecc
Confidence            34679999999999999999999999999999999998          788888888877776543 3579999999999


Q ss_pred             CcccccccCC--------cc-----cccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         249 DLFQEKITKS--------PL-----TVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       249 Dl~~~k~~~~--------~l-----~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      |+........        .+     .....++   ..+.+++|||++|.||+++|+.+.+.++
T Consensus       117 Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~---~~~~~~E~SAkt~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         117 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRI---GAFGYMECSAKTKDGVREVFEMATRAAL  176 (177)
T ss_dssp             GGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHT---TCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHhhcccccHHHHHHHHHHc---CCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence            9865321111        11     1111111   2357899999999999999999998875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.3e-26  Score=183.54  Aligned_cols=116  Identities=16%  Similarity=0.132  Sum_probs=94.9

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+.+||++|++.++..+..++++++++++|+|+++          ..++.+...|+..+.......++|++|||||+|
T Consensus        50 ~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~D  119 (167)
T d1kaoa_          50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVN----------QQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD  119 (167)
T ss_dssp             EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGG
T ss_pred             eEeeccccCCCccccccchHHHhhcccceeeeeeecc----------hhhhhhhhchhhhhhhhccCCCCCEEEEEEccc
Confidence            4778999999999999999999999999999999999          899999999998887655557899999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      +...+.........+.   ...++.+++|||++|.||.++|++|++.|.
T Consensus       120 l~~~~~~~~~~~~~~~---~~~~~~~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         120 LESEREVSSSEGRALA---EEWGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             GGGGCCSCHHHHHHHH---HHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhcccchHHHHHHHH---HHcCCeEEEECCCCCcCHHHHHHHHHHHHc
Confidence            8765333222222222   224567899999999999999999988763

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.9e-25  Score=180.99  Aligned_cols=118  Identities=17%  Similarity=0.169  Sum_probs=94.8

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ....+.+||++|++.+..+|..++++++++|+|+|+++          ..++.+...++..+... ...++|++|++||+
T Consensus        52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~  120 (174)
T d2bmea1          52 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS----------RETYNALTNWLTDARML-ASQNIVIILCGNKK  120 (174)
T ss_dssp             EEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEEEEEECG
T ss_pred             cceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEeccc----------chhHHHHhhhhcccccc-cCCceEEEEEEecc
Confidence            45789999999999999999999999999999999998          77788777777776543 33679999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |+..+..........++   ...++.+++|||++|.||+++|.++.+.++++
T Consensus       121 D~~~~~~~~~~~~~~~~---~~~~~~~~e~Sak~~~gi~e~f~~l~~~i~~~  169 (174)
T d2bmea1         121 DLDADREVTFLEASRFA---QENELMFLETSALTGENVEEAFVQCARKILNK  169 (174)
T ss_dssp             GGGGGCCSCHHHHHHHH---HHTTCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             cccchhchhhhHHHHHH---HhCCCEEEEeeCCCCcCHHHHHHHHHHHHHHH
Confidence            98654322222222232   23567899999999999999999999998865

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.3e-25  Score=182.16  Aligned_cols=114  Identities=15%  Similarity=0.192  Sum_probs=92.3

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+.+||++|++.+...|..++++++++++|+|+++          ..++++...|+.++...  ..++|++||+||+|
T Consensus        50 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~--~~~~~iilVgnK~D  117 (164)
T d1z2aa1          50 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTD----------RESFEAISSWREKVVAE--VGDIPTALVQNKID  117 (164)
T ss_dssp             EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHH--HCSCCEEEEEECGG
T ss_pred             eeeeeeeccCCccchhhhhhhhhccCceEEEEEeccc----------hhhhhhccccccccccc--CCCceEEEeeccCC
Confidence            3788999999999999999999999999999999999          78888888888877542  24689999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      +..++....+..+.|.   ...++.+++|||++|.||.++|++|++.++
T Consensus       118 l~~~~~v~~~~~~~~~---~~~~~~~~e~Sak~g~~v~e~f~~l~~~~l  163 (164)
T d1z2aa1         118 LLDDSCIKNEEAEGLA---KRLKLRFYRTSVKEDLNVSEVFKYLAEKHL  163 (164)
T ss_dssp             GGGGCSSCHHHHHHHH---HHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             cccceeeeehhhHHHH---HHcCCEEEEeccCCCcCHHHHHHHHHHHHh
Confidence            8765432222222232   224678999999999999999999999876

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.4e-25  Score=180.23  Aligned_cols=115  Identities=12%  Similarity=0.141  Sum_probs=86.0

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      ...+.+||++|+..++.+|..++++++++|+|+|+++          ..+++....+++.+... .....|++|++||+|
T Consensus        51 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~D  119 (167)
T d1z08a1          51 RVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITD----------EDSFQKVKNWVKELRKM-LGNEICLCIVGNKID  119 (167)
T ss_dssp             EEEEEEEECCCC-------CCSSTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGG
T ss_pred             cceeeeeccCCcceecccchhhccCCceeEEEEeCCc----------hhHHHhhhhhhhhcccc-cccccceeeeccccc
Confidence            4788999999999999999999999999999999999          88888888888766432 235689999999999


Q ss_pred             ccccccc-CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         250 LFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       250 l~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      +..++.. ..+. ..|+   ...++.+++|||++|.||.++|.+|++.|++
T Consensus       120 l~~~~~v~~~e~-~~~a---~~~~~~~~e~Sak~~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         120 LEKERHVSIQEA-ESYA---ESVGAKHYHTSAKQNKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             GGGGCCSCHHHH-HHHH---HHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             cccccccchHHH-HHHH---HHcCCeEEEEecCCCcCHHHHHHHHHHHHhh
Confidence            8765322 2222 2232   2256788999999999999999999998863

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.5e-25  Score=184.13  Aligned_cols=121  Identities=17%  Similarity=0.266  Sum_probs=97.7

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+++++||++||+.++.+|..++++++++|+|+|+++          ..+++....|+..+.......++|++||+||.|
T Consensus        63 ~~~~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~D  132 (186)
T d2f7sa1          63 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTS----------QQSFLNVRNWMSQLQANAYCENPDIVLIGNKAD  132 (186)
T ss_dssp             EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTC----------HHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTT
T ss_pred             eEEeccccCCcchhhHHHHHHHHhcCCEEEEEEeccc----------cccceeeeeccchhhhhccCCCceEEEEeeecc
Confidence            3679999999999999999999999999999999998          788888888887776655567789999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhhh
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANLK  303 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~~  303 (313)
                      +..++....+....|.   ...++.+++|||++|+||.++|+++.+.+.++.-+
T Consensus       133 l~~~~~v~~~e~~~~~---~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         133 LPDQREVNERQARELA---DKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             CGGGCCSCHHHHHHHH---HHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhcchHHHHHHHH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            8765322222222222   22467889999999999999999999999876433

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.3e-25  Score=183.42  Aligned_cols=114  Identities=11%  Similarity=0.095  Sum_probs=89.8

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+.+||++||+.++..|..++++++++++|+|+++          ..++++...++...++.. ..++|++||+||+|+
T Consensus        57 ~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~----------~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl  125 (185)
T d2atxa1          57 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN----------PASFQNVKEEWVPELKEY-APNVPFLLIGTQIDL  125 (185)
T ss_dssp             EEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTS
T ss_pred             EEeecccccccchhhhhhhhcccccceeeeccccch----------HHHHHHHHHHHHHHHHhc-CCCCCeeEeeecccc
Confidence            678999999999999999999999999999999999          888888888887776643 457999999999998


Q ss_pred             ccccc-------------cCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         251 FQEKI-------------TKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       251 ~~~k~-------------~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      .....             ..++..+...++   ..+.+++|||++|.||+++|+.+.+.++
T Consensus       126 ~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~---~~~~~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         126 RDDPKTLARLNDMKEKPICVEQGQKLAKEI---GACCYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             TTCHHHHHHHTTTTCCCCCHHHHHHHHHHH---TCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhcccccccHHHHHHHHHHc---CCCEEEEecCCCCcCHHHHHHHHHHHHc
Confidence            65211             111111111112   2357899999999999999999988774

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.9e-25  Score=179.23  Aligned_cols=116  Identities=13%  Similarity=0.097  Sum_probs=94.5

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+.+||++|++.++.++..++.+++++|+|+|+++          ..++.....|+..+.+.....++|++|++||+|
T Consensus        51 ~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~D  120 (167)
T d1xtqa1          51 EYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTS----------IKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD  120 (167)
T ss_dssp             EEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTC----------HHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTT
T ss_pred             EEEeeecccccccccccccchhhhhhhhhhhhcccch----------hhhhhhhhhhhhhhhhcccccccceeeeccccc
Confidence            4778999999999999999999999999999999999          889999989998887655556799999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      +..++....+....|.   ...++.+++|||++|.||+++|+.|.+.+.
T Consensus       121 l~~~r~v~~~~~~~~a---~~~~~~~~e~Sak~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         121 LHMERVISYEEGKALA---ESWNAAFLESSAKENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             CGGGCCSCHHHHHHHH---HHHTCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             cccccchhHHHHHHHH---HHcCCEEEEEecCCCCCHHHHHHHHHHHhc
Confidence            8765422222112222   224577899999999999999999988764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=5.3e-25  Score=183.55  Aligned_cols=118  Identities=19%  Similarity=0.214  Sum_probs=94.6

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ..+.+.+|||+|++.++.+|..++++++++|+|+|+++          ..++.+...++..+.. ....+.|++|++||+
T Consensus        53 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~----------~~s~~~~~~~~~~~~~-~~~~~~~iilv~nK~  121 (194)
T d2bcgy1          53 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTD----------QESFNGVKMWLQEIDR-YATSTVLKLLVGNKC  121 (194)
T ss_dssp             EEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHH-HSCTTCEEEEEEECT
T ss_pred             EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCcc----------hhhhhhHhhhhhhhhh-cccCCceEEEEEecc
Confidence            34789999999999999999999999999999999998          7888888887777643 345778999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |+........+....+.   ...++.++++||++|.||.++|+++.+.+.+.
T Consensus       122 D~~~~~~~~~~~~~~~~---~~~~~~~~e~SAk~g~gi~e~f~~l~~~i~~~  170 (194)
T d2bcgy1         122 DLKDKRVVEYDVAKEFA---DANKMPFLETSALDSTNVEDAFLTMARQIKES  170 (194)
T ss_dssp             TCTTTCCSCHHHHHHHH---HHTTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ccccccchhHHHHhhhh---hccCcceEEEecCcCccHHHHHHHHHHHHHHH
Confidence            98765333322222222   22456789999999999999999999988753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.4e-25  Score=181.37  Aligned_cols=117  Identities=14%  Similarity=0.103  Sum_probs=89.1

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+++||++|+..+. .+..++++++++++|+|+++          ..++.....++..........+.|++||+||+|
T Consensus        49 ~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~D  117 (168)
T d2atva1          49 VVSMEILDTAGQEDTI-QREGHMRWGEGFVLVYDITD----------RGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD  117 (168)
T ss_dssp             EEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGG
T ss_pred             ceEEEEeecccccccc-cchhhhcccccceeecccCC----------ccchhhhhhhcccccccccccCcceeeeccchh
Confidence            3789999999998764 55678999999999999999          777777777665544434446799999999999


Q ss_pred             ccccccc-CCcccccCcCCCCCCCeEEEEeecccCc-CHHHHHHHHHHHHHHhh
Q psy8318         250 LFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATDTS-NIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       250 l~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~~~-~v~~~f~~i~~~i~~~~  301 (313)
                      +..++.. ..+..+ |.   ...++.+++|||++|. ||.++|.++++.|.++.
T Consensus       118 l~~~r~V~~~e~~~-~a---~~~~~~~~e~Saktg~gnV~e~F~~l~~~i~~~r  167 (168)
T d2atva1         118 LDHSRQVSTEEGEK-LA---TELACAFYECSACTGEGNITEIFYELCREVRRRR  167 (168)
T ss_dssp             GGGGCCSCHHHHHH-HH---HHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhhccCcHHHHHH-HH---HHhCCeEEEEccccCCcCHHHHHHHHHHHHHHhc
Confidence            8765322 222222 22   2246789999999998 69999999999988764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.1e-25  Score=181.20  Aligned_cols=116  Identities=17%  Similarity=0.140  Sum_probs=91.2

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+.+||++|+..+...+..++++++++++|+|+++          ..++.....|+..+.......+.|++||+||+|
T Consensus        52 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~D  121 (171)
T d2erya1          52 AARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTD----------RGSFEEIYKFQRQILRVKDRDEFPMILIGNKAD  121 (171)
T ss_dssp             EEEEEEEECC----CCHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTT
T ss_pred             ccccccccccccccccccccccccccceEEEeecccc----------ccchhhHHHHhHHHHhhcccCCCCEEEEEeccc
Confidence            3689999999999999999999999999999999999          788888888888877655556789999999999


Q ss_pred             cccccccC-CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         250 LFQEKITK-SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       250 l~~~k~~~-~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      +..++... .+.. .+.   ...++.+++|||++|.||.++|.+|.+.|.+
T Consensus       122 l~~~~~v~~~~~~-~~~---~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~k  168 (171)
T d2erya1         122 LDHQRQVTQEEGQ-QLA---RQLKVTYMEASAKIRMNVDQAFHELVRVIRK  168 (171)
T ss_dssp             CTTSCSSCHHHHH-HHH---HHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             hhhhccchHHHHH-HHH---HHcCCEEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence            87643222 2222 222   2356788999999999999999999998854

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=9.6e-25  Score=177.51  Aligned_cols=114  Identities=16%  Similarity=0.095  Sum_probs=90.5

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      ...+.+||++|++.++.+|..++.+++++|+|+|+++          ..++.....++..+.. ....+.|++||+||+|
T Consensus        52 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~-~~~~~~~iilvgnK~D  120 (167)
T d1z0ja1          52 LHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITK----------EETFSTLKNWVRELRQ-HGPPSIVVAIAGNKCD  120 (167)
T ss_dssp             EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHH-HSCTTSEEEEEEECTT
T ss_pred             ccceeeeecCCchhhhHHHHHHHhhccceEEEeeech----------hhhhhhHHHhhhhhhh-ccCCcceEEEecccch
Confidence            3567899999999999999999999999999999998          7777777777766543 3446789999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +..++....+....|.   ...++.+++|||++|.||+++|.+|++.|
T Consensus       121 l~~~~~v~~~~~~~~~---~~~~~~~~e~SAk~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         121 LTDVREVMERDAKDYA---DSIHAIFVETSAKNAININELFIEISRRI  165 (167)
T ss_dssp             CGGGCCSCHHHHHHHH---HHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             hccccchhHHHHHHHH---HHcCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence            8765333222222232   22467899999999999999999998875

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.4e-25  Score=179.68  Aligned_cols=118  Identities=17%  Similarity=0.212  Sum_probs=96.9

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ....+.+||++|++.++..|..++.+++++|+|+|+++          ..++++...++..+.+. ...++|++|++||+
T Consensus        50 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~  118 (173)
T d2a5ja1          50 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLTSWLEDARQH-SSSNMVIMLIGNKS  118 (173)
T ss_dssp             EEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEEEEEECT
T ss_pred             eEEEEEeecccCccchhhHHHHHhhccCEEEEEEeecC----------hHHHHhHHHHHHHHHHh-CCCCCeEEEEecCC
Confidence            34789999999999999999999999999999999999          89999999999887653 33578999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |+...+....+....+.   ...++.+++|||++|.||.++|.++.+.+.++
T Consensus       119 D~~~~~~~~~~~~~~~a---~~~~~~~~e~Sa~tg~~V~e~f~~i~~~i~~~  167 (173)
T d2a5ja1         119 DLESRRDVKREEGEAFA---REHGLIFMETSAKTACNVEEAFINTAKEIYRK  167 (173)
T ss_dssp             TCGGGCCSCHHHHHHHH---HHHTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhHHHHHHHHH---HHcCCEEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence            98765433322222232   22467899999999999999999999998865

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.2e-25  Score=177.62  Aligned_cols=114  Identities=18%  Similarity=0.209  Sum_probs=92.2

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+.+||++|++.++..|..++.+++++++|+|+++          ..++.+...++..+... ...++|++||+||+|
T Consensus        48 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~i~~~~~~~~~~-~~~~~~iilvgnK~D  116 (164)
T d1yzqa1          48 TIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN----------VNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTD  116 (164)
T ss_dssp             EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-HTTSSEEEEEEECTT
T ss_pred             ceeeeecccCCcchhccchHHHhhccceEEEeecccc----------ccchhhhHhhHHHHHHh-cCCCceEEEEecccc
Confidence            3788999999999999999999999999999999999          78888888888887643 235789999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +........+....+.   ...++.+++|||++|.||.++|++|++.|
T Consensus       117 l~~~~~~~~~~~~~~~---~~~~~~~~e~SAk~g~~v~e~f~~i~~~l  161 (164)
T d1yzqa1         117 LADKRQVSIEEGERKA---KELNVMFIETSAKAGYNVKQLFRRVAAAL  161 (164)
T ss_dssp             CGGGCCSCHHHHHHHH---HHTTCEEEECCTTTCTTHHHHHHHHHHHS
T ss_pred             hhhhhhhhHHHHHHHH---HHcCCEEEEecCCCCcCHHHHHHHHHHhh
Confidence            8764332222222232   23567899999999999999999998865

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.2e-25  Score=179.61  Aligned_cols=115  Identities=17%  Similarity=0.217  Sum_probs=93.7

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+.+||++|++.++..|..++++++++|+|+|+++          ..++.....++..+.+ ....+.|++|++||+|
T Consensus        54 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~-~~~~~~~iilvgnK~D  122 (170)
T d1r2qa_          54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN----------EESFARAKNWVKELQR-QASPNIVIALSGNKAD  122 (170)
T ss_dssp             EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHH-HSCTTCEEEEEEECGG
T ss_pred             EEEEEeccCCCchhhhhhHHHHhhCcceEEEEeccch----------hhHHHHHHHHhhhhhh-ccCCCceEEeeccccc
Confidence            4789999999999999999999999999999999998          7888888888887754 3346799999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      +..++....+....+.   ...++.+++|||++|.||.++|.+|++.|.
T Consensus       123 l~~~~~v~~e~~~~~~---~~~~~~~~e~SAk~g~~V~e~f~~l~~~i~  168 (170)
T d1r2qa_         123 LANKRAVDFQEAQSYA---DDNSLLFMETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             GGGGCCSCHHHHHHHH---HHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred             ccccccccHHHHHHHH---HhcCCEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            8765433323233333   235678999999999999999999988664

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-24  Score=178.97  Aligned_cols=118  Identities=14%  Similarity=0.182  Sum_probs=98.0

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ..+.+.+||++|++.++.+|..++.+++++|+|+|+++          .+++..+..++..+.........|+++++||.
T Consensus        54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~  123 (177)
T d1x3sa1          54 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTR----------RDTFVKLDNWLNELETYCTRNDIVNMLVGNKI  123 (177)
T ss_dssp             EEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHTTCCSCSCCEEEEEEECT
T ss_pred             cccEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC----------ccccccchhhhhhhcccccccceeeEEEeecc
Confidence            44789999999999999999999999999999999998          88999999999988766556679999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      |.....+...+..+. .   ...++.+++|||++|+||.++|+++.+.+++.
T Consensus       124 d~~~~~v~~~~~~~~-~---~~~~~~~~e~Sa~tg~gv~e~f~~l~~~l~~~  171 (177)
T d1x3sa1         124 DKENREVDRNEGLKF-A---RKHSMLFIEASAKTCDGVQCAFEELVEKIIQT  171 (177)
T ss_dssp             TSSSCCSCHHHHHHH-H---HHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             ccccccccHHHHHHH-H---HHCCCEEEEEeCCCCCCHHHHHHHHHHHHccC
Confidence            977654433333322 2   23567899999999999999999999888743

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.7e-25  Score=177.60  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=91.8

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ..+.+.+||++||+.++..|..++++++++|+|+|+++          ..++.....++..+.+ ......|+++++||+
T Consensus        51 ~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~-~~~~~~~iilvgnK~  119 (166)
T d1z0fa1          51 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDARN-LTNPNTVIILIGNKA  119 (166)
T ss_dssp             EEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTC----------HHHHHTHHHHHHHHHH-HSCTTCEEEEEEECT
T ss_pred             EEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEeccCc----------hHHHHHHHHHHHHHHh-hccccceEEEEcccc
Confidence            34689999999999999999999999999999999998          7788888888877644 344678999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      |+........+....++   +..++.+++|||++|.||.++|++|.+.|
T Consensus       120 Dl~~~~~~~~~~~~~~~---~~~~~~~~e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         120 DLEAQRDVTYEEAKQFA---EENGLLFLEASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             TCGGGCCSCHHHHHHHH---HHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cchhhcccHHHHHHHHH---HHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            98664332222222222   22467899999999999999999998875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.3e-25  Score=181.83  Aligned_cols=116  Identities=15%  Similarity=0.110  Sum_probs=90.5

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC-CCCCCCcEEEEeecC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS-KWFMDTSIILFLNKN  248 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~-~~~~~~piilv~NK~  248 (313)
                      .+.+.+||++|++.++..+..++++++++|+|+|+++          ..++.+...|+..+... ....++|++|||||+
T Consensus        49 ~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~  118 (171)
T d2erxa1          49 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITS----------RQSLEELKPIYEQICEIKGDVESIPIMLVGNKC  118 (171)
T ss_dssp             EEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTC----------HHHHHTTHHHHHHHHHHHC---CCCEEEEEECG
T ss_pred             cceeccccccccccccccccccccceeEEEEEeeccc----------ccchhcccchhhhhhhhhccCCCCcEEEEeecc
Confidence            3678899999999999999999999999999999998          78888888888777543 234678999999999


Q ss_pred             CcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         249 DLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       249 Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      |+..++....+..+.|.   ...++.+++|||++|.||+++|++|.+.+.
T Consensus       119 Dl~~~~~v~~~e~~~~~---~~~~~~~~e~Sak~~~~v~e~f~~l~~~~~  165 (171)
T d2erxa1         119 DESPSREVQSSEAEALA---RTWKCAFMETSAKLNHNVKELFQELLNLEK  165 (171)
T ss_dssp             GGGGGCCSCHHHHHHHH---HHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred             cccccccccHHHHHHHH---HHcCCeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence            98664322222222232   224678999999999999999999987654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3.4e-24  Score=175.36  Aligned_cols=119  Identities=13%  Similarity=0.169  Sum_probs=83.2

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh---CCCCCCCcEEEEee
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN---SKWFMDTSIILFLN  246 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~---~~~~~~~piilv~N  246 (313)
                      ...+.+||++|++.+...|..+++.++++++|+|+++          ..+++.+..|+.++..   .....++|++|++|
T Consensus        51 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~n  120 (175)
T d1ky3a_          51 VATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTN----------ASSFENIKSWRDEFLVHANVNSPETFPFVILGN  120 (175)
T ss_dssp             CEEEEEECCC----------CCSTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEE
T ss_pred             cccceeeccCCchhhhhHHHHHhhccceEEEEeeccc----------ccccchhhhcchhhhhhhhhcccccCcEEEEec
Confidence            3678999999999999999999999999999999998          7778887777777653   23345789999999


Q ss_pred             cCCccccc-ccCC-cccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         247 KNDLFQEK-ITKS-PLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       247 K~Dl~~~k-~~~~-~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      |+|+..++ .... ...+....+   ..+.+++|||++|.||+++|++|.+.+++++
T Consensus       121 K~Dl~~~~~~v~~~~~~~~~~~~---~~~~~~e~SA~~g~gv~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         121 KIDAEESKKIVSEKSAQELAKSL---GDIPLFLTSAKNAINVDTAFEEIARSALQQN  174 (175)
T ss_dssp             CTTSCGGGCCSCHHHHHHHHHHT---TSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhcchhHHHHHHHHHHc---CCCeEEEEeCCCCcCHHHHHHHHHHHHHhcc
Confidence            99987643 2222 222222222   3456899999999999999999999888764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=5.9e-25  Score=179.86  Aligned_cols=118  Identities=14%  Similarity=0.131  Sum_probs=81.0

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+++||++|++.+...|..++++++++|+|+|+++          ..++.....++..+.+ ....+.|+++++||.|
T Consensus        54 ~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~-~~~~~~~iilv~~k~D  122 (173)
T d2fu5c1          54 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITN----------EKSFDNIRNWIRNIEE-HASADVEKMILGNKCD  122 (173)
T ss_dssp             EEEEEEEEC---------CCTTTTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHH-HSCTTCEEEEEEEC--
T ss_pred             EEEEEEEECCCchhhHHHHHHhccCCCEEEEEEECCC----------hhhHHHHHHHHHHhhh-hccCCceEEEEEeccc
Confidence            4788899999999999999999999999999999998          7888888888877754 3456799999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      +...+....+....+.   ...++.+++|||++|+||.++|.||.+.|..+.
T Consensus       123 ~~~~~~~~~~~~~~~~---~~~~~~~~e~Sa~~g~gv~e~f~~l~~~i~~k~  171 (173)
T d2fu5c1         123 VNDKRQVSKERGEKLA---LDYGIKFMETSAKANINVENAFFTLARDIKAKM  171 (173)
T ss_dssp             CCSCCCSCHHHHHHHH---HHHTCEEEECCC---CCHHHHHHHHHHHHHHHH
T ss_pred             chhhcccHHHHHHHHH---HhcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            8764322222111121   224678999999999999999999999987653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8e-25  Score=177.81  Aligned_cols=116  Identities=15%  Similarity=0.105  Sum_probs=94.9

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+.+||++|++.++..+..++++++++++|+|+++          ..+++....|+..+.......++|++|++||+|
T Consensus        50 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  119 (166)
T d1ctqa_          50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN----------TKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD  119 (166)
T ss_dssp             EEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTT
T ss_pred             eeeeeeeeccCccccccchhhhhhcccccceeecccc----------cccHHHHHHHHHHHHHhcCCCCCeEEEEecccc
Confidence            4679999999999999999999999999999999999          888888888888877655556799999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      +..+.....+..+ |.   ...++.+++|||++|+||.++|.++.+.|.+
T Consensus       120 l~~~~~~~~~~~~-~~---~~~~~~~~e~Sak~g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         120 LAARTVESRQAQD-LA---RSYGIPYIETSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             CSCCCSCHHHHHH-HH---HHHTCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             cccccccHHHHHH-HH---HHhCCeEEEEcCCCCcCHHHHHHHHHHHHHh
Confidence            8664333323222 22   2245678999999999999999999988753

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.8e-24  Score=174.72  Aligned_cols=117  Identities=15%  Similarity=0.221  Sum_probs=94.6

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+.+||++|++.++..|..++++++++|+|+|+++          ..++.....++..+.+. ...++|++||+||+|
T Consensus        52 ~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~----------~~S~~~~~~~~~~i~~~-~~~~~piilvgnK~D  120 (175)
T d2f9la1          52 TIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAK----------HLTYENVERWLKELRDH-ADSNIVIMLVGNKSD  120 (175)
T ss_dssp             EEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTT
T ss_pred             EEEEEecccCCcHHHHHHHHHHhhccCeEEEEEECCC----------cccchhHHHHHHHHHHh-cCCCCcEEEEEeeec
Confidence            3788999999999999999999999999999999999          88888888888887653 335789999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +..++....+....+.   ......+++|||++|.||.++|+++.+.+.+.
T Consensus       121 l~~~~~~~~~~~~~~~---~~~~~~~~e~Sa~~g~~i~e~f~~l~~~i~~~  168 (175)
T d2f9la1         121 LRHLRAVPTDEARAFA---EKNNLSFIETSALDSTNVEEAFKNILTEIYRI  168 (175)
T ss_dssp             CGGGCCSCHHHHHHHH---HHTTCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ccccccchHHHHHHhh---cccCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence            8765333222222222   22456789999999999999999999998654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.9e-24  Score=178.48  Aligned_cols=116  Identities=18%  Similarity=0.196  Sum_probs=89.5

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      +.+.+.+||++|++.+...+..++++++++|+|+|+++          ..++++...++...... ...++|++||+||+
T Consensus        51 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~sf~~i~~~~~~~~~~-~~~~~piilvgnK~  119 (183)
T d1mh1a_          51 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVS----------PASFENVRAKWYPEVRH-HCPNTPIILVGTKL  119 (183)
T ss_dssp             EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHH-HSTTSCEEEEEECH
T ss_pred             cceEEEeecccccccchhhhhhcccccceeeeeeccch----------HHHHHHHHHHHHHHHHH-hCCCCcEEEEeecc
Confidence            44778999999999999999999999999999999998          78888777766666553 34578999999999


Q ss_pred             CcccccccCCccc-------------ccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         249 DLFQEKITKSPLT-------------VCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       249 Dl~~~k~~~~~l~-------------~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      |+...+.......             ....+   ...+.+++|||++|.||+++|++|.+.++
T Consensus       120 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---~~~~~~~E~SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKE---IGAVKYLECSALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             HHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH---TTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             cchhhhhhhhhhhhccccchhhHHHHHHHHH---cCCceEEEcCCCCCcCHHHHHHHHHHHHc
Confidence            9865422111100             00011   13468999999999999999999998775

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.1e-24  Score=174.97  Aligned_cols=114  Identities=17%  Similarity=0.202  Sum_probs=84.3

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      +.+++|||+||+.++..|..++++++++++|+|+++          ..++.....++..+.... ....|+++++||+|.
T Consensus        56 ~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~d~  124 (170)
T d2g6ba1          56 VKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTN----------KASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDS  124 (170)
T ss_dssp             EEEEEEECCCC--------CCGGGCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCST
T ss_pred             EEEEEEECCCchhhHHHHHHhhcCCceeEEEecCCc----------ccchhhhhhhhhhhhhcc-CCCceEEEEEeeech
Confidence            688999999999999999999999999999999998          788888888887765532 356899999999998


Q ss_pred             ccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         251 FQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       251 ~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      ..+.....+....+.   ...++.+++|||++|.||.++|++|++.|+
T Consensus       125 ~~~~~v~~~~~~~~~---~~~~~~~~e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         125 AHERVVKREDGEKLA---KEYGLPFMETSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             TSCCCSCHHHHHHHH---HHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhcccccHHHHHHHH---HHcCCEEEEEeCCCCcCHHHHHHHHHHHcC
Confidence            775333222222222   224678999999999999999999998875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=6.1e-24  Score=175.45  Aligned_cols=119  Identities=13%  Similarity=0.168  Sum_probs=93.9

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhC---CCCCCCcEEEEee
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNS---KWFMDTSIILFLN  246 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~---~~~~~~piilv~N  246 (313)
                      .+.+.+||++|+...+..|..++..++++++|+|.++          ..++..+..|+..+...   ....+.|++||+|
T Consensus        50 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~n  119 (184)
T d1vg8a_          50 LVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTA----------PNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN  119 (184)
T ss_dssp             EEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEE
T ss_pred             eEEEEeeecCCcccccccccccccCccEEEEeecccc----------hhhhhcchhhHHHHHHHhccccccCCCEEEEEE
Confidence            4788999999999999999999999999999999998          77777777777766542   2335689999999


Q ss_pred             cCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         247 KNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       247 K~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      |+|+..+..........+.+   ...+.+++|||++|.||.++|+++.+.++++.
T Consensus       120 K~Dl~~~~~~~~~~~~~~~~---~~~~~~~e~Sak~~~gI~e~f~~l~~~i~~~~  171 (184)
T d1vg8a_         120 KIDLENRQVATKRAQAWCYS---KNNIPYFETSAKEAINVEQAFQTIARNALKQE  171 (184)
T ss_dssp             CTTSSCCCSCHHHHHHHHHH---TTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             eecccccchhHHHHHHHHHH---hcCCeEEEEcCCCCcCHHHHHHHHHHHHHhcc
Confidence            99987654333333322221   24677899999999999999999999887653

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3e-24  Score=178.46  Aligned_cols=117  Identities=14%  Similarity=0.172  Sum_probs=91.0

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+++||++|++.++..|..+|++++++++|+|+++          ..++++...++...... ...+.|+++++||+|
T Consensus        50 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~Sf~~~~~~~~~~~~~-~~~~~~i~lvgnK~D  118 (191)
T d2ngra_          50 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS----------PSSFENVKEKWVPEITH-HCPKTPFLLVGTQID  118 (191)
T ss_dssp             EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHH-HCTTCCEEEEEECGG
T ss_pred             eeeeeccccccchhhhhhhhhcccccceeecccccch----------HHHHHHHHHHHHHHHhh-cCCCCceEEEecccc
Confidence            3679999999999999999999999999999999999          78888888777776653 235799999999999


Q ss_pred             cccccccCC--------cc-----cccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         250 LFQEKITKS--------PL-----TVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       250 l~~~k~~~~--------~l-----~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +...+....        .+     .+...++   ..+.+++|||++|.||+++|+.+.+.+++.
T Consensus       119 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~e~SAk~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         119 LRDDPSTIEKLAKNKQKPITPETAEKLARDL---KAVKYVECSALTQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             GGGCHHHHHHHHTTTCCCCCHHHHHHHHHHT---TCSCEEECCTTTCTTHHHHHHHHHHHHTSC
T ss_pred             ccccchhhhhhhhcccccccHHHHHHHHHHc---CCCeEEEEeCCCCcCHHHHHHHHHHHHhcC
Confidence            875422110        11     1111112   346789999999999999999999877643

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=6.7e-24  Score=174.59  Aligned_cols=117  Identities=14%  Similarity=0.150  Sum_probs=89.7

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ..+.+++||++|++.++..+..++++++++|+|+|+++          ..+++....++...+... ..++|++|||||+
T Consensus        48 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~Sf~~~~~~~~~~~~~~-~~~~~iilVgnK~  116 (179)
T d1m7ba_          48 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR----------PETLDSVLKKWKGEIQEF-CPNTKMLLVGCKS  116 (179)
T ss_dssp             CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH-CTTCEEEEEEECG
T ss_pred             eEEeeccccccccccccccccchhhhhhhhheeeeccc----------CCCHHHHHHHHHHHHhcc-CCcceEEEEEecc
Confidence            34778999999999999999999999999999999999          788888888877765432 2478999999999


Q ss_pred             Cccccccc-------------CCcccccCcCCCCCCCeEEEEeecccCcC-HHHHHHHHHHHHHH
Q psy8318         249 DLFQEKIT-------------KSPLTVCFPEYTDQKEIYTHFTCATDTSN-IQFVFDAVTDVIIK  299 (313)
Q Consensus       249 Dl~~~k~~-------------~~~l~~~f~~~~~~~~~~~~~tSA~~~~~-v~~~f~~i~~~i~~  299 (313)
                      |+......             ..+......+.   ....+++|||++|.| |+++|+.+.+.+++
T Consensus       117 Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~---~~~~y~E~SAk~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         117 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQI---GAATYIECSALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             GGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH---TCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             cccccchhhHHHhhhhcCcchHHHHHHHHHHh---CCCeEEEEeCCCCCcCHHHHHHHHHHHHhc
Confidence            98642111             11111111111   235789999999985 99999999998874

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.3e-24  Score=172.88  Aligned_cols=115  Identities=16%  Similarity=0.127  Sum_probs=88.9

Q ss_pred             ceeeeEecC---CCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeec
Q psy8318         171 LHFKMFDVG---GQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNK  247 (313)
Q Consensus       171 ~~~~i~D~~---Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK  247 (313)
                      ..+.+||++   ||+.+  ++..|+++++++|+|+|+++          ..++++...|+..+.......++|++||+||
T Consensus        53 ~~~~~~d~~~~~g~e~~--~~~~~~~~~~~~ilvfd~t~----------~~s~~~~~~~~~~i~~~~~~~~~piilvgnK  120 (172)
T d2g3ya1          53 ATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITD----------RASFEKASELRIQLRRARQTEDIPIILVGNK  120 (172)
T ss_dssp             EEEEEECCTTTTHHHHH--HHHCCCCCCSEEEEEEETTC----------HHHHHHHHHHHHHHHTSGGGTTSCEEEEEEC
T ss_pred             eeeeeeccccccccccc--cccccccccceeeeeecccc----------cchhhhhhhhhhhhhhccccCCceEEEEecc
Confidence            456667754   56544  67889999999999999999          8899999999988877656678999999999


Q ss_pred             CCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         248 NDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       248 ~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +|+..++....+....+.   ...++.+++|||++|.||.++|+++++.|..+
T Consensus       121 ~Dl~~~~~v~~~~~~~~a---~~~~~~~~e~Sak~g~~i~~~f~~l~~~i~~r  170 (172)
T d2g3ya1         121 SDLVRCREVSVSEGRACA---VVFDCKFIETSAAVQHNVKELFEGIVRQVRLR  170 (172)
T ss_dssp             TTCGGGCCSCHHHHHHHH---HHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ccccccccccHHHHHHHH---HHcCCeEEEEeCCCCcCHHHHHHHHHHHHHHc
Confidence            998765322211112222   22467899999999999999999999988654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.3e-23  Score=170.36  Aligned_cols=117  Identities=12%  Similarity=0.175  Sum_probs=91.9

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH---hCCCCCCCcEEEEee
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC---NSKWFMDTSIILFLN  246 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~---~~~~~~~~piilv~N  246 (313)
                      .+.+.+||++|+...+..|..++..++++++++|+++          ..++.....|++.+.   ......+.|++||+|
T Consensus        54 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgn  123 (174)
T d1wmsa_          54 FVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDD----------SQSFQNLSNWKKEFIYYADVKEPESFPFVILGN  123 (174)
T ss_dssp             EEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEE
T ss_pred             eeeEeeecccCcceehhhhhhhhhccceEEEEEeeec----------ccccchhhhHHHHHHHHhccccCCCceEEEecc
Confidence            3778999999999999999999999999999999998          667776666665554   333445789999999


Q ss_pred             cCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         247 KNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       247 K~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      |+|+....+...+..+...++   ..+.+++|||++|.||.++|+++++.|+.
T Consensus       124 K~Dl~~~~v~~~~~~~~~~~~---~~~~~~e~Sak~~~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         124 KIDISERQVSTEEAQAWCRDN---GDYPYFETSAKDATNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             CTTCSSCSSCHHHHHHHHHHT---TCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             ccchhhccCcHHHHHHHHHHc---CCCeEEEEcCCCCcCHHHHHHHHHHHHhc
Confidence            999876444444443333322   34678999999999999999999998863

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.1e-23  Score=171.64  Aligned_cols=114  Identities=18%  Similarity=0.201  Sum_probs=90.6

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+.+||++|++.+..+|..++.+++++|+|+|+++          ..++.....++..+... .....|+++++||+|
T Consensus        51 ~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~~~~~v~nk~d  119 (170)
T d1ek0a_          51 TVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTK----------PQSFIKARHWVKELHEQ-ASKDIIIALVGNKID  119 (170)
T ss_dssp             EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGG
T ss_pred             cccccccccCCchhHHHHHHHHHhccceEEEEEeCCc----------ccchhhhhhhhhhhccc-cccccceeeeecccc
Confidence            4789999999999999999999999999999999999          88888888888776543 345789999999999


Q ss_pred             cccccccCC---cccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         250 LFQEKITKS---PLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       250 l~~~k~~~~---~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +........   +....+.   ...++.+++|||++|.||+++|.+|.+.|
T Consensus       120 ~~~~~~~~~v~~~~~~~~~---~~~~~~~~e~Sak~g~gV~e~F~~i~~~i  167 (170)
T d1ek0a_         120 MLQEGGERKVAREEGEKLA---EEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             GGGSSCCCCSCHHHHHHHH---HHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             cccccchhhhhHHHHHHHH---HHcCCEEEEecCCCCcCHHHHHHHHHHHh
Confidence            865422111   1111222   23567899999999999999999987654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.2e-23  Score=170.69  Aligned_cols=116  Identities=16%  Similarity=0.233  Sum_probs=90.7

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      .+.+.+||++||+.++.+|..++++++++|+|+|+++          ..+++....++..... ......|+++++||.|
T Consensus        50 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~-~~~~~~~~i~~~~k~d  118 (166)
T d1g16a_          50 KVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD----------ERTFTNIKQWFKTVNE-HANDEAQLLLVGNKSD  118 (166)
T ss_dssp             EEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTC----------HHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTT
T ss_pred             EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC----------ccCHHHHHhhhhhhhc-cccCcceeeeecchhh
Confidence            3678899999999999999999999999999999998          6666666555555543 3345679999999999


Q ss_pred             cccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHh
Q psy8318         250 LFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKA  300 (313)
Q Consensus       250 l~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~  300 (313)
                      +..+.....+.... .   ...++.+++|||++|+||.++|++|.+.+.++
T Consensus       119 ~~~~~~~~~~~~~~-~---~~~~~~~~~~Sa~~~~~v~e~f~~l~~~i~~k  165 (166)
T d1g16a_         119 METRVVTADQGEAL-A---KELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  165 (166)
T ss_dssp             CTTCCSCHHHHHHH-H---HHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             hhhhhhhHHHHHHH-H---HhcCCeEEEECCCCCCCHHHHHHHHHHHHHhc
Confidence            87654443333322 2   12457899999999999999999999988654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.89  E-value=6.2e-23  Score=164.45  Aligned_cols=123  Identities=24%  Similarity=0.400  Sum_probs=98.7

Q ss_pred             EEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEE
Q psy8318         164 THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIIL  243 (313)
Q Consensus       164 ~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piil  243 (313)
                      .......+.+.+||++|+...+..|..++..++++++++|+++          ...+..+..++.++.........|+++
T Consensus        37 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~  106 (160)
T d1r8sa_          37 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVNEAREELMRMLAEDELRDAVLLV  106 (160)
T ss_dssp             EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGGTTCEEEE
T ss_pred             EEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecC----------hHHHHHHHHHHHHHHHhhcccCceEEE
Confidence            3445677899999999999999999999999999999999998          788899999999988877778899999


Q ss_pred             EeecCCcccccccCCcccccC-cCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         244 FLNKNDLFQEKITKSPLTVCF-PEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       244 v~NK~Dl~~~k~~~~~l~~~f-~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ++||.|+...... .++.... ..+.....+.+++|||++|+||.++|+||.++|
T Consensus       107 v~~k~d~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         107 FANKQDLPNAMNA-AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             EEECTTSTTCCCH-HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             EeecccccccccH-HHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence            9999998764211 1111110 011134578899999999999999999998764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.5e-23  Score=169.89  Aligned_cols=112  Identities=20%  Similarity=0.274  Sum_probs=87.9

Q ss_pred             cCceeeeEecCCCccccc-cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeec
Q psy8318         169 KDLHFKMFDVGGQRSERK-KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNK  247 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~-~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK  247 (313)
                      +...+.+||++|+..... .|..|+++++++|+|+|+++          ..++++...++..+.+.....++|++|||||
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK  118 (165)
T d1z06a1          49 ERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTN----------MASFHSLPAWIEECKQHLLANDIPRILVGNK  118 (165)
T ss_dssp             EEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHHCCCSCCCEEEEEEC
T ss_pred             cceEEEEEeccCchhhccccceeeecCCCceEEEEEeeh----------hhhhhhhhhhhHHHHhhccCCCCeEEEEecc
Confidence            457899999999877654 57889999999999999999          8899998889988877656678999999999


Q ss_pred             CCccccc-ccCCcccccCcCCCCCCCeEEEEeeccc---CcCHHHHHHHHH
Q psy8318         248 NDLFQEK-ITKSPLTVCFPEYTDQKEIYTHFTCATD---TSNIQFVFDAVT  294 (313)
Q Consensus       248 ~Dl~~~k-~~~~~l~~~f~~~~~~~~~~~~~tSA~~---~~~v~~~f~~i~  294 (313)
                      +|+..+. +..++.. .|.   ...++.+++|||++   ++||.++|.+|+
T Consensus       119 ~Dl~~~~~v~~~~~~-~~~---~~~~~~~~e~SAkt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         119 CDLRSAIQVPTDLAQ-KFA---DTHSMPLFETSAKNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             TTCGGGCCSCHHHHH-HHH---HHTTCCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred             ccchhccchhHHHHH-HHH---HHCCCEEEEEecccCCcCcCHHHHHHHhC
Confidence            9987653 2222222 232   23467789999987   459999999873

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.88  E-value=1.4e-22  Score=165.58  Aligned_cols=131  Identities=16%  Similarity=0.257  Sum_probs=101.2

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .+|.|.....+...+..+.+||++|++..+..|..++..++++++|+|.++          ..++......+........
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d----------~~~~~~~~~~~~~~~~~~~  113 (177)
T d1zj6a1          44 SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD----------RERISVTREELYKMLAHED  113 (177)
T ss_dssp             ECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTC----------TTTHHHHHHHHHHHHTSGG
T ss_pred             ccccceeEEEEeecceEEEEeccccccccccchhhhhccceeeeeeccccc----------ccchhhhhhhhhhhhhccc
Confidence            355566666777788999999999999999999999999999999999998          6788888888877777777


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccCc-CCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCFP-EYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f~-~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ..+.|++|++||+|+.... ...++.+.+. .....+++.+++|||++|+||.++|+||.+.+
T Consensus       114 ~~~~p~iiv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         114 LRKAGLLIFANKQDVKECM-TVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             GTTCEEEEEEECTTSTTCC-CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             ccceEEEEEEEcccccccC-cHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            7899999999999986542 2222222211 11144678999999999999999999999876

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.2e-22  Score=162.59  Aligned_cols=115  Identities=15%  Similarity=0.132  Sum_probs=85.1

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH--hCCCCCCCcEEEEeec
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC--NSKWFMDTSIILFLNK  247 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~--~~~~~~~~piilv~NK  247 (313)
                      .+.+.+||++|+..+     .|+++++++|+|||+++          ..+++....|+..+.  +.....+.|++||+||
T Consensus        51 ~~~l~i~Dt~g~~~~-----~~~~~ad~~ilVfd~~~----------~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k  115 (175)
T d2bmja1          51 THLVLIREEAGAPDA-----KFSGWADAVIFVFSLED----------ENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ  115 (175)
T ss_dssp             EEEEEEEECSSCCCH-----HHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHCC--CCCCEEEEEEEC
T ss_pred             EEEEEEeeccccccc-----ccccccceeEEEeeccc----------chhhhhhHHHHHHHHHHhhcccCCccEEEEeee
Confidence            378999999999764     37899999999999998          778887777776653  3334467899999999


Q ss_pred             CCccccccc---CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhhh
Q psy8318         248 NDLFQEKIT---KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKANL  302 (313)
Q Consensus       248 ~Dl~~~k~~---~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~~  302 (313)
                      .|+......   ..+......+   ..++.+++|||++|.||.++|..+++.++...-
T Consensus       116 ~d~d~~~~~~v~~~~~~~~~~~---~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~  170 (175)
T d2bmja1         116 DRISASSPRVVGDARARALCAD---MKRCSYYETCATYGLNVDRVFQEVAQKVVTLRK  170 (175)
T ss_dssp             TTCCSSSCCCSCHHHHHHHHHT---STTEEEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             cCcchhhhcchhHHHHHHHHHH---hCCCeEEEeCCCCCcCHHHHHHHHHHHHHHhhh
Confidence            997543211   1122222222   256789999999999999999999998887643

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.85  E-value=2.8e-21  Score=158.18  Aligned_cols=130  Identities=20%  Similarity=0.332  Sum_probs=99.0

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||.+.....+.+++..+.+||+.|+......|..++...+++++++|+++          ...+.+....+......+.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d----------~~~~~~~~~~~~~~~~~~~  111 (186)
T d1f6ba_          42 VPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCAD----------HERLLESKEELDSLMTDET  111 (186)
T ss_dssp             -CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGG
T ss_pred             ecccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeeeeeccC----------ccchHHHHHHHHHhhcccc
Confidence            356666666778888999999999999999999999999999999999998          7788888888877777777


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccc--------------cCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTV--------------CFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~--------------~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ..+.|++|++||.|+.... ....+.+              ..... ..+++.+++|||++|+||.++|+||.++|
T Consensus       112 ~~~~~~li~~~K~D~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         112 IANVPILILGNKIDRPEAI-SEERLREMFGLYGQTTGKGSVSLKEL-NARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             GTTSCEEEEEECTTSTTCC-CHHHHHHHHTCTTTCCCSSCCCTTTC-CSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             cCCCceEEEEeccCccccC-CHHHHHHHHhhcccchhhhhhhHHHh-hcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence            7889999999999986531 1111110              11111 44578899999999999999999998754

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.85  E-value=1.6e-20  Score=151.25  Aligned_cols=133  Identities=20%  Similarity=0.314  Sum_probs=105.3

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .+|.|........++..+.+||.+|....+..|..++..++++++++|+++          ..+.......+........
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~  103 (169)
T d1upta_          34 IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCD----------RDRIGISKSELVAMLEEEE  103 (169)
T ss_dssp             CCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTC----------CTTHHHHHHHHHHHHTCGG
T ss_pred             ecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhhh----------cchhhhccchhhhhhhhhc
Confidence            356666666777789999999999999999999999999999999999998          6777777777777777666


Q ss_pred             CCCCcEEEEeecCCcccccccCCcccccC-cCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVCF-PEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~f-~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      ....|+++++||.|+..+... .++...+ ..+...+.+.+++|||++|+||.++|++|.+.+.+
T Consensus       104 ~~~~~i~iv~nk~Dl~~~~~~-~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         104 LRKAILVVFANKQDMEQAMTS-SEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS  167 (169)
T ss_dssp             GTTCEEEEEEECTTSTTCCCH-HHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             cccceEEEEEeeccccccccH-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            778999999999998764322 1222111 11113467899999999999999999999998754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.4e-20  Score=150.79  Aligned_cols=129  Identities=19%  Similarity=0.276  Sum_probs=103.4

Q ss_pred             eeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCC
Q psy8318         156 VKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKW  235 (313)
Q Consensus       156 ~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~  235 (313)
                      .||.|.......+.+..+.+||++|.......|..++..++++++++|.++          ...+.....++....+...
T Consensus        29 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----------~~~~~~~~~~~~~~~~~~~   98 (166)
T d2qtvb1          29 QPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAAD----------PERFDEARVELDALFNIAE   98 (166)
T ss_dssp             CCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCTT
T ss_pred             eceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccc----------hhhhhhhhHHHHhhhhhhc
Confidence            467787777888889999999999999999999999999999999999998          6778888888888888777


Q ss_pred             CCCCcEEEEeecCCcccccccCCccccc--------CcCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         236 FMDTSIILFLNKNDLFQEKITKSPLTVC--------FPEYTDQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       236 ~~~~piilv~NK~Dl~~~k~~~~~l~~~--------f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                      ..+.|+++++||.|+.... ...++.+.        .......+.+.+++|||++|+||.++|+||.+
T Consensus        99 ~~~~~i~i~~~k~d~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1          99 LKDVPFVILGNKIDAPNAV-SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             TTTCCEEEEEECTTSSSCC-CHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             cCCceEEEEeccccccccC-CHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence            8889999999999986531 11111110        01111346788999999999999999999965

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=4.4e-17  Score=132.91  Aligned_cols=116  Identities=14%  Similarity=0.085  Sum_probs=76.6

Q ss_pred             EEEEEecCceeeeEecCCCcccccccc--------ccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         163 ETHFTFKDLHFKMFDVGGQRSERKKWI--------HCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       163 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~--------~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      .......+..+.+|||+|+......+.        .++++|+++|||+|.++          ...  +...++...+.. 
T Consensus        45 ~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~----------~~~--~~~~~i~~~l~~-  111 (178)
T d1wf3a1          45 RGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRH----------PPT--PEDELVARALKP-  111 (178)
T ss_dssp             EEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTS----------CCC--HHHHHHHHHHGG-
T ss_pred             cceeeeeeeeeeecccccccccccccchhcccccccccccccceeeeechhh----------hhc--ccccchhhheec-
Confidence            334455778999999999865544443        34678999999999986          211  222333344432 


Q ss_pred             CCCCCcEEEEeecCCccccccc-CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         235 WFMDTSIILFLNKNDLFQEKIT-KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~~k~~-~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ...+.|+++|+||+|+....-. ...+.+.+      ....++++||++|.||.+++++|.+.+
T Consensus       112 ~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~------~~~~~~~iSA~~~~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         112 LVGKVPILLVGNKLDAAKYPEEAMKAYHELL------PEAEPRMLSALDERQVAELKADLLALM  169 (178)
T ss_dssp             GTTTSCEEEEEECGGGCSSHHHHHHHHHHTS------TTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             cccchhhhhhhcccccccCHHHHHHHHHhhc------ccCceEEEecCCCCCHHHHHHHHHHhC
Confidence            3356899999999998653211 11122222      123578899999999999999987644

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=2.1e-16  Score=126.36  Aligned_cols=111  Identities=13%  Similarity=0.178  Sum_probs=76.3

Q ss_pred             EEEecCceeeeEecCCCcccccc--------ccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         165 HFTFKDLHFKMFDVGGQRSERKK--------WIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       165 ~~~~~~~~~~i~D~~Gq~~~r~~--------w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      .+...+..+.+||++|.......        ...++.+++++++++|..+.          ..+.+.. ++..++.. ..
T Consensus        43 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~----------~~~~~~~-~~~~~~~~-~~  110 (161)
T d2gj8a1          43 HIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTT----------DAVDPAE-IWPEFIAR-LP  110 (161)
T ss_dssp             EEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTC----------CCCSHHH-HCHHHHHH-SC
T ss_pred             eeeccCceeeeccccccccccccchhHHHHHHHHHHHhccccceeeccccc----------cchhhhh-hhhhhhhh-cc
Confidence            45667889999999997544332        23457889999999999972          3322222 22333322 22


Q ss_pred             CCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      .+.|++||+||+|+..+...   +    .+.   ....++++||++|.||++++++|.+.|
T Consensus       111 ~~~~iilv~NK~Dl~~~~~~---~----~~~---~~~~~~~iSAk~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         111 AKLPITVVRNKADITGETLG---M----SEV---NGHALIRLSARTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             TTCCEEEEEECHHHHCCCCE---E----EEE---TTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred             cccceeeccchhhhhhhHHH---H----HHh---CCCcEEEEECCCCCCHHHHHHHHHhhC
Confidence            46899999999998653221   1    112   456789999999999999999998753

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=2e-15  Score=125.89  Aligned_cols=86  Identities=14%  Similarity=0.208  Sum_probs=62.9

Q ss_pred             eecceeEEEEEe---cCceeeeEecCCCcccc-ccccccccCCcEEEEEEecCCccccccccccccc-HHHHHHHHHHHH
Q psy8318         157 KTTGIIETHFTF---KDLHFKMFDVGGQRSER-KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNR-MIESMKLFDSIC  231 (313)
Q Consensus       157 ~T~g~~~~~~~~---~~~~~~i~D~~Gq~~~r-~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~-l~e~~~~~~~~~  231 (313)
                      ||++.+...+.+   .++.+.+||++|++.++ ..|..++..++++++|+|+++          ..+ +.+...++..++
T Consensus        30 ~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d----------~~~~~~~~~~~l~~~l   99 (207)
T d2fh5b1          30 TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA----------FQREVKDVAEFLYQVL   99 (207)
T ss_dssp             CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTT----------HHHHHHHHHHHHHHHH
T ss_pred             CCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEccc----------ccccHHHHHHHHHHHH
Confidence            444544444444   45889999999998886 578888999999999999997          333 455556665554


Q ss_pred             hC--CCCCCCcEEEEeecCCccc
Q psy8318         232 NS--KWFMDTSIILFLNKNDLFQ  252 (313)
Q Consensus       232 ~~--~~~~~~piilv~NK~Dl~~  252 (313)
                      ..  ....++|++|++||+|+..
T Consensus       100 ~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1         100 IDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             HHHHTSTTCCEEEEEEECTTSTT
T ss_pred             HhHHHhhcCCcEEEEEECcccCC
Confidence            32  2234689999999999875

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.62  E-value=6.6e-16  Score=124.90  Aligned_cols=121  Identities=13%  Similarity=0.136  Sum_probs=77.1

Q ss_pred             eeEEEEEecCceeeeEecCCCccc---------cccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHH
Q psy8318         161 IIETHFTFKDLHFKMFDVGGQRSE---------RKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSIC  231 (313)
Q Consensus       161 ~~~~~~~~~~~~~~i~D~~Gq~~~---------r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~  231 (313)
                      .....+......+.+||++|....         ...+..++..++++++++|.++           ....+...++..+ 
T Consensus        38 ~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~-----------~~~~~~~~~~~~l-  105 (171)
T d1mkya1          38 PVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKR-----------GITKEDESLADFL-  105 (171)
T ss_dssp             CSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTT-----------CCCHHHHHHHHHH-
T ss_pred             cccccccccccccccccccceeeeeccccccccccccccccccCcEEEEeecccc-----------ccccccccccccc-
Confidence            334456667888999999995322         2233444678999999999875           1222222333322 


Q ss_pred             hCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHHhh
Q psy8318         232 NSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIKAN  301 (313)
Q Consensus       232 ~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~~~  301 (313)
                      ..   .++|+++++||+|+..+. .. +....+...   ....++++||++|.||++++++|.+.+.++.
T Consensus       106 ~~---~~~pviiv~NK~Dl~~~~-~~-~~~~~~~~~---~~~~~i~iSAk~g~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         106 RK---STVDTILVANKAENLREF-ER-EVKPELYSL---GFGEPIPVSAEHNINLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             HH---HTCCEEEEEESCCSHHHH-HH-HTHHHHGGG---SSCSCEECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred             cc---ccccccccchhhhhhhhh-hh-HHHHHHHhc---CCCCeEEEecCCCCCHHHHHHHHHHhCCCCC
Confidence            21   357999999999987542 11 111111111   1224578999999999999999999876553

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.56  E-value=2.2e-15  Score=122.82  Aligned_cols=115  Identities=12%  Similarity=0.208  Sum_probs=74.2

Q ss_pred             cCceeeeEecCCCccc-------cccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcE
Q psy8318         169 KDLHFKMFDVGGQRSE-------RKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSI  241 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~-------r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~pi  241 (313)
                      .+..+++|||+|....       ...+..++..++.+++++|.+...        ...+.....++...  .....+.|+
T Consensus        47 ~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~--------~~~~~~~~~~~~~~--~~~~~~~p~  116 (180)
T d1udxa2          47 EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEP--------LKTLETLRKEVGAY--DPALLRRPS  116 (180)
T ss_dssp             SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCH--------HHHHHHHHHHHHHH--CHHHHHSCE
T ss_pred             CCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhccccccc--------ccchhhhhhhhhcc--ccccchhhh
Confidence            5678999999995332       122334567899999999987521        12222233333221  112235799


Q ss_pred             EEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         242 ILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       242 ilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      ++|+||+|+..+.... .+.+.+.    ..+..++++||++|+||+++++.|.+.+.
T Consensus       117 iiv~NK~D~~~~~~~~-~~~~~~~----~~~~~~~~iSA~tg~gid~L~~~i~~~l~  168 (180)
T d1udxa2         117 LVALNKVDLLEEEAVK-ALADALA----REGLAVLPVSALTGAGLPALKEALHALVR  168 (180)
T ss_dssp             EEEEECCTTSCHHHHH-HHHHHHH----TTTSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHHHHH-HHHHHHH----hcCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            9999999987643221 2222222    23567899999999999999999988774

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.55  E-value=4.6e-15  Score=120.99  Aligned_cols=120  Identities=9%  Similarity=0.081  Sum_probs=81.8

Q ss_pred             EEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEE
Q psy8318         165 HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILF  244 (313)
Q Consensus       165 ~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv  244 (313)
                      .+...+..+.++|++|+..+.+........++++++|+|.++-           ........+..+..    .+.|++++
T Consensus        53 ~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g-----------~~~~~~~~~~~~~~----~~~p~iiv  117 (179)
T d1wb1a4          53 AFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEG-----------PKTQTGEHMLILDH----FNIPIIVV  117 (179)
T ss_dssp             EEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTC-----------SCHHHHHHHHHHHH----TTCCBCEE
T ss_pred             ccccCCccccccccccccccccchhhhhhhccccccccccccc-----------cchhhhhhhhhhhh----cCCcceec
Confidence            4455778899999999998888888888999999999999861           11223333433322    36899999


Q ss_pred             eecCCcccccccC---CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         245 LNKNDLFQEKITK---SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       245 ~NK~Dl~~~k~~~---~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      +||+|+.......   ......+.....-....++++||++|+|+.++++.|.+.+-+
T Consensus       118 ~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         118 ITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             EECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            9999986532110   011111111101134568899999999999999999887754

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.54  E-value=7.2e-15  Score=117.08  Aligned_cols=109  Identities=16%  Similarity=0.276  Sum_probs=72.0

Q ss_pred             EEEEecCceeeeEecCCCcccc---------ccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         164 THFTFKDLHFKMFDVGGQRSER---------KKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       164 ~~~~~~~~~~~i~D~~Gq~~~r---------~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      ..+...+..+.+||++|.....         ......+..++++++|+|.++          ... .+.......+    
T Consensus        41 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~----------~~~-~~~~~~~~~~----  105 (160)
T d1xzpa2          41 EEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASS----------PLD-EEDRKILERI----  105 (160)
T ss_dssp             EEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTS----------CCC-HHHHHHHHHH----
T ss_pred             EEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCC----------Ccc-hhhhhhhhhc----
Confidence            3456688899999999943211         111223578999999999997          222 2223333322    


Q ss_pred             CCCCCcEEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHH
Q psy8318         235 WFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTD  295 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~  295 (313)
                        ...|+++++||.|+..+ .....+...+.     ....++++||++|+||++++++|.+
T Consensus       106 --~~~~~i~~~~k~d~~~~-~~~~~~~~~~~-----~~~~~~~vSA~~g~gi~~L~~~I~k  158 (160)
T d1xzpa2         106 --KNKRYLVVINKVDVVEK-INEEEIKNKLG-----TDRHMVKISALKGEGLEKLEESIYR  158 (160)
T ss_dssp             --TTSSEEEEEEECSSCCC-CCHHHHHHHHT-----CSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred             --ccccceeeeeeccccch-hhhHHHHHHhC-----CCCcEEEEECCCCCCHHHHHHHHHh
Confidence              34689999999998764 33333333322     2235788999999999999998865

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.51  E-value=3.1e-15  Score=122.37  Aligned_cols=118  Identities=12%  Similarity=0.119  Sum_probs=74.7

Q ss_pred             cCceeeeEecCCCcccc----ccc---cccccCCcEEEEEEecCCcccccccccccccHHHHHHH-HHHHHhCCCCCCCc
Q psy8318         169 KDLHFKMFDVGGQRSER----KKW---IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKL-FDSICNSKWFMDTS  240 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r----~~w---~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~-~~~~~~~~~~~~~p  240 (313)
                      ++..+.+|||+|.....    ..+   ...+..++.++++++.+..+..       ......... ...........++|
T Consensus        47 ~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~kp  119 (185)
T d1lnza2          47 DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGR-------DPYDDYLTINQELSEYNLRLTERP  119 (185)
T ss_dssp             SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCC-------CHHHHHHHHHHHHHHSCSSTTTSC
T ss_pred             CCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeecccccc-------hhhhhhhhhhhccchhhhhccCCc
Confidence            44679999999963222    222   2234668899999988764321       111111111 11222345556789


Q ss_pred             EEEEeecCCcccccccCCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHH
Q psy8318         241 IILFLNKNDLFQEKITKSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVII  298 (313)
Q Consensus       241 iilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~  298 (313)
                      +++++||+|+...+.....+.+.+.     .+..++.+||++|.|+.+++++|.+.+.
T Consensus       120 ~ivv~NK~Dl~~~~~~~~~~~~~~~-----~~~~v~~iSA~~g~Gi~~L~~~i~~~L~  172 (185)
T d1lnza2         120 QIIVANKMDMPEAAENLEAFKEKLT-----DDYPVFPISAVTREGLRELLFEVANQLE  172 (185)
T ss_dssp             BCBEEECTTSTTHHHHHHHHHHHCC-----SCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred             chhhccccchHhHHHHHHHHHHHhc-----cCCcEEEEECCCCCCHHHHHHHHHHhhh
Confidence            9999999999865433333444332     3445789999999999999999988763

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.49  E-value=3.6e-15  Score=121.60  Aligned_cols=123  Identities=14%  Similarity=0.132  Sum_probs=68.4

Q ss_pred             eeeeEecCCCccc-----------cccc----cccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         172 HFKMFDVGGQRSE-----------RKKW----IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       172 ~~~i~D~~Gq~~~-----------r~~w----~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      .+++|||+|....           ...+    ....+.++++++|+|.+..+..................++.+..    
T Consensus        44 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~----  119 (184)
T d2cxxa1          44 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE----  119 (184)
T ss_dssp             TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH----
T ss_pred             cceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH----
Confidence            4678999994211           1222    23356799999999987522111100000001111223333322    


Q ss_pred             CCCcEEEEeecCCccccccc-CCcccccCc-CCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKIT-KSPLTVCFP-EYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~-~~~l~~~f~-~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                      .+.|+++|+||+|+....-. ...+.+.+. .+ ......++++||++|.||.+++++|.+.+.+
T Consensus       120 ~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         120 LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL-SEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG-GGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEeeeehhhhHHHHHHHHHHHhcccc-cccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            36899999999997543111 111111111 11 1123347789999999999999999988764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.44  E-value=2.4e-13  Score=110.81  Aligned_cols=117  Identities=13%  Similarity=0.155  Sum_probs=71.1

Q ss_pred             EEEecCceeeeEecCCCccccc------------cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHh
Q psy8318         165 HFTFKDLHFKMFDVGGQRSERK------------KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICN  232 (313)
Q Consensus       165 ~~~~~~~~~~i~D~~Gq~~~r~------------~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~  232 (313)
                      .+...+..+.++|++|......            .+..+.+.++++++|+|.+.           ....+...+...+..
T Consensus        50 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~-----------~~~~~~~~~~~~~~~  118 (186)
T d1mkya2          50 EVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQ-----------GITRQDQRMAGLMER  118 (186)
T ss_dssp             EEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTT-----------CCCHHHHHHHHHHHH
T ss_pred             eeccCCceeeeeccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccc-----------cchhhHHHHHHHHHH
Confidence            3445666677777777654333            33444577999999999975           222333333333322


Q ss_pred             CCCCCCCcEEEEeecCCcccccccC-Ccc----cccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         233 SKWFMDTSIILFLNKNDLFQEKITK-SPL----TVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       233 ~~~~~~~piilv~NK~Dl~~~k~~~-~~l----~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                          .+.|+++++||+|+...+-.. .++    .+.+...   ....++++||++|.||++++++|.+.+..
T Consensus       119 ----~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         119 ----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFI---DYSPLIFTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             ----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGG---TTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ----cCCceeeeccchhhhcchhhhhhhHHHHHHHHhccc---CCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence                357999999999976432211 111    2222111   23468899999999999999999776543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.44  E-value=3.4e-14  Score=117.09  Aligned_cols=93  Identities=12%  Similarity=0.136  Sum_probs=59.7

Q ss_pred             cccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCC---ccccc
Q psy8318         187 KWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKS---PLTVC  263 (313)
Q Consensus       187 ~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~---~l~~~  263 (313)
                      .+...+..+++|++++|.+.          . -..+..++++.+..    .++|+++|+||+|+..+.-...   .+.+.
T Consensus        98 ~~~~~~~~~~~vi~viD~~~----------~-~~~~~~~~~~~l~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~  162 (195)
T d1svia_          98 TYITTREELKAVVQIVDLRH----------A-PSNDDVQMYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQT  162 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTS----------C-CCHHHHHHHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHH
T ss_pred             hhhccccchhhhhhhhhccc----------c-cccccccccccccc----ccCcceechhhccccCHHHHHHHHHHHHHH
Confidence            34455677899999999875          1 11222333333322    3579999999999754321111   12222


Q ss_pred             CcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         264 FPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       264 f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +.   ......++.+||++|.|+++++++|.+.+
T Consensus       163 l~---~~~~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         163 LN---IDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             HT---CCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hc---ccCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            22   22455788999999999999999998865

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.44  E-value=2.2e-13  Score=115.04  Aligned_cols=116  Identities=10%  Similarity=0.053  Sum_probs=80.1

Q ss_pred             EecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEee
Q psy8318         167 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLN  246 (313)
Q Consensus       167 ~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~N  246 (313)
                      +.++..+.++||+|+..+..........+|++|+|+|..+           .-.......+..+..    .+.|+++++|
T Consensus        66 ~~~~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~-----------g~~~~~~~~~~~~~~----~~~p~iivlN  130 (227)
T d1g7sa4          66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINE-----------GFKPQTQEALNILRM----YRTPFVVAAN  130 (227)
T ss_dssp             GGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTT-----------CCCHHHHHHHHHHHH----TTCCEEEEEE
T ss_pred             cccccccccccccceecccccchhcccccceEEEEEeccc-----------CcccchhHHHHHhhc----CCCeEEEEEE
Confidence            3466789999999999988887778899999999999986           112233444444433    4689999999


Q ss_pred             cCCcccccccCC--cccccC-----------------------------------cCCCCCCCeEEEEeecccCcCHHHH
Q psy8318         247 KNDLFQEKITKS--PLTVCF-----------------------------------PEYTDQKEIYTHFTCATDTSNIQFV  289 (313)
Q Consensus       247 K~Dl~~~k~~~~--~l~~~f-----------------------------------~~~~~~~~~~~~~tSA~~~~~v~~~  289 (313)
                      |+|+........  ++...+                                   +++  .....++++||.+|.|++++
T Consensus       131 K~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~i~pvSa~~G~gid~L  208 (227)
T d1g7sa4         131 KIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDF--ASQVSIIPISAITGEGIPEL  208 (227)
T ss_dssp             CGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCT--TTEEEEEECCTTTCTTHHHH
T ss_pred             CccCCCchhhhhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccc--cCCCeEEEeeCCCCCCHHHH
Confidence            999865322111  110000                                   001  12357889999999999999


Q ss_pred             HHHHHHHHHH
Q psy8318         290 FDAVTDVIIK  299 (313)
Q Consensus       290 f~~i~~~i~~  299 (313)
                      ++.|.....+
T Consensus       209 l~~l~~l~~~  218 (227)
T d1g7sa4         209 LTMLMGLAQQ  218 (227)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988876543

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.38  E-value=1.5e-12  Score=112.40  Aligned_cols=84  Identities=18%  Similarity=0.096  Sum_probs=69.8

Q ss_pred             eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      |.-|+......+++++.+++++||+|+..|..-....++-+|++|+|+|..+           .--..+...|+....  
T Consensus        55 r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~-----------Gv~~~T~~~w~~a~~--  121 (276)
T d2bv3a2          55 RGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQ-----------GVEPQSETVWRQAEK--  121 (276)
T ss_dssp             CCCCCCCSEEEEEETTEEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTT-----------SSCHHHHHHHHHHHT--
T ss_pred             cCCccccceeeeccCCeEEEEecCCchhhhHHHHHHHHHhhhheEEeccccC-----------CcchhHHHHHHHHHH--
Confidence            5667777788899999999999999999998888888899999999999996           444556677766543  


Q ss_pred             CCCCCcEEEEeecCCcccc
Q psy8318         235 WFMDTSIILFLNKNDLFQE  253 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~~~  253 (313)
                        .+.|.++|.||+|..+.
T Consensus       122 --~~lP~i~fINKmDr~~a  138 (276)
T d2bv3a2         122 --YKVPRIAFANKMDKTGA  138 (276)
T ss_dssp             --TTCCEEEEEECTTSTTC
T ss_pred             --cCCCEEEEEeccccccc
Confidence              47899999999998763

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=4.4e-13  Score=111.06  Aligned_cols=79  Identities=19%  Similarity=0.241  Sum_probs=56.9

Q ss_pred             EEEecCceeeeEecCCCccccccccccc----cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHH---HhCCCCC
Q psy8318         165 HFTFKDLHFKMFDVGGQRSERKKWIHCF----EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSI---CNSKWFM  237 (313)
Q Consensus       165 ~~~~~~~~~~i~D~~Gq~~~r~~w~~~~----~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~---~~~~~~~  237 (313)
                      .++.++..+.+||++|+...+..|..++    ..++.+++++|.++-         ...+.+...++..+   +......
T Consensus        40 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~  110 (209)
T d1nrjb_          40 AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD---------PKKLTTTAEFLVDILSITESSCEN  110 (209)
T ss_dssp             ETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSC---------TTCCHHHHHHHHHHHHHHHHHSTT
T ss_pred             EEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceEEEEecc---------cccHHHHHHHHHHHHHHHHHHHhc
Confidence            4455778899999999999988888875    345889999998862         23444444444332   2333446


Q ss_pred             CCcEEEEeecCCccc
Q psy8318         238 DTSIILFLNKNDLFQ  252 (313)
Q Consensus       238 ~~piilv~NK~Dl~~  252 (313)
                      ++|+++|+||+|+..
T Consensus       111 ~~piiiv~NK~D~~~  125 (209)
T d1nrjb_         111 GIDILIACNKSELFT  125 (209)
T ss_dssp             CCCEEEEEECTTSTT
T ss_pred             cCCeEEEEEeecccc
Confidence            799999999999865

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.29  E-value=1e-12  Score=108.18  Aligned_cols=114  Identities=14%  Similarity=0.089  Sum_probs=76.0

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ....+.++|++|+..+.+.-..-...++++++|+|..+--       ......+.......+      ...+++++.||+
T Consensus        76 ~~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~-------~~~~t~e~~~~~~~~------~~~~iiv~inK~  142 (195)
T d1kk1a3          76 FVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPC-------PRPQTREHLMALQII------GQKNIIIAQNKI  142 (195)
T ss_dssp             EEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCS-------SCHHHHHHHHHHHHH------TCCCEEEEEECG
T ss_pred             CceeEeeeccchhhhhhHHhhcccccccccccccchhhhh-------hhhhhHHHHHHHHHh------cCccceeeeecc
Confidence            3456899999999888777777778899999999988710       011122333333322      234688899999


Q ss_pred             Cccccccc---CCcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         249 DLFQEKIT---KSPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       249 Dl~~~k~~---~~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      |+....-.   ...+.+.+..+ ....+.++++||++|+|+.++++.|.+.
T Consensus       143 D~~d~~~~~~~~~~~~~~~~~~-~~~~~~iIpiSA~~G~ni~~Ll~~I~~~  192 (195)
T d1kk1a3         143 ELVDKEKALENYRQIKEFIEGT-VAENAPIIPISALHGANIDVLVKAIEDF  192 (195)
T ss_dssp             GGSCHHHHHHHHHHHHHHHTTS-TTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHhccc-cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            98764211   11233333333 2345678999999999999998888764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.26  E-value=2.3e-12  Score=106.97  Aligned_cols=113  Identities=12%  Similarity=0.077  Sum_probs=74.8

Q ss_pred             ceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCc
Q psy8318         171 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDL  250 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl  250 (313)
                      ..+.+.|++|+..|-+........++++|+|+|..+          .-....+.+.+..+..   ..-.|++|+.||+|+
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~----------gi~~~~t~e~~~~~~~---~~i~~iIV~vNK~Dl  152 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE----------PFPQPQTREHFVALGI---IGVKNLIIVQNKVDV  152 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTS----------CSSCHHHHHHHHHHHH---TTCCCEEEEEECGGG
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccc----------cccchhHHHHHHHHHH---cCCceeeeccccCCC
Confidence            468999999999887777777788999999999986          1111222223322211   123589999999998


Q ss_pred             ccccccC---CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         251 FQEKITK---SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       251 ~~~k~~~---~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      .......   ..+...+..+ ....+.++++||++|.||.++++.|...+
T Consensus       153 ~~~~~~~~~~~~~~~~l~~~-~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         153 VSKEEALSQYRQIKQFTKGT-WAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             SCHHHHHHHHHHHHHHHTTS-TTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             ccchHHHHHHHHHHHHhccc-cCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            6532111   1122222222 22456789999999999999998877653

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.25  E-value=4.2e-12  Score=104.52  Aligned_cols=125  Identities=17%  Similarity=0.182  Sum_probs=81.7

Q ss_pred             ecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318         158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM  237 (313)
Q Consensus       158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~  237 (313)
                      |+-.....+.+.+..+.+.|++|+..|-+--..-...+|++|+|+|.++           .-..+..+.+..+..   ..
T Consensus        53 Ti~~~~~~~~~~~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~-----------G~~~QT~~~~~~a~~---~~  118 (196)
T d1d2ea3          53 TINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAND-----------GPMPQTREHLLLARQ---IG  118 (196)
T ss_dssp             EEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTT-----------CSCHHHHHHHHHHHH---TT
T ss_pred             cCCcceEEEEeceeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCC-----------CCchhHHHHHHHHHH---hc
Confidence            3333445667788999999999999887766667788999999999996           222333443333322   13


Q ss_pred             CCcEEEEeecCCcccccc----cCCcccccCcCCC-CCCCeEEEEeecccC----------cCHHHHHHHHHHH
Q psy8318         238 DTSIILFLNKNDLFQEKI----TKSPLTVCFPEYT-DQKEIYTHFTCATDT----------SNIQFVFDAVTDV  296 (313)
Q Consensus       238 ~~piilv~NK~Dl~~~k~----~~~~l~~~f~~~~-~~~~~~~~~tSA~~~----------~~v~~~f~~i~~~  296 (313)
                      ..|+|++.||+|+....-    ...++.+++..+. ....+.+.++||++|          .++.++++.|.+.
T Consensus       119 ~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         119 VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence            368999999999854211    1123444443231 223467899999998          4777777766543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.23  E-value=2.5e-11  Score=104.23  Aligned_cols=82  Identities=11%  Similarity=0.080  Sum_probs=65.4

Q ss_pred             eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      +..|+......+.+++.+++++||+|+..|..-.....+-+|++|+|+|..+           .-...+...|+....  
T Consensus        51 r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~-----------Gv~~~t~~~~~~~~~--  117 (267)
T d2dy1a2          51 HRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEA-----------GVQVGTERAWTVAER--  117 (267)
T ss_dssp             TTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTT-----------CSCHHHHHHHHHHHH--
T ss_pred             hCCeEEeecccccccccceeEEccCchhhhhhhhhhhhcccCceEEEeeccC-----------CccchhHHHHHhhhh--
Confidence            4556666667888999999999999999988777777888999999999986           344555666665544  


Q ss_pred             CCCCCcEEEEeecCCcc
Q psy8318         235 WFMDTSIILFLNKNDLF  251 (313)
Q Consensus       235 ~~~~~piilv~NK~Dl~  251 (313)
                        .+.|.++|.||+|..
T Consensus       118 --~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2         118 --LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             --TTCCEEEEEECGGGC
T ss_pred             --ccccccccccccccc
Confidence              368999999999964

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.19  E-value=3.5e-11  Score=99.58  Aligned_cols=114  Identities=16%  Similarity=0.192  Sum_probs=74.0

Q ss_pred             eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCC
Q psy8318         155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSK  234 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~  234 (313)
                      |.-|+......+.+++.++.++||+|+..|-+.-..-.+.+|++|+|+|.++           --..++.+.+.....  
T Consensus        51 rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~-----------Gv~~qt~~~~~~~~~--  117 (204)
T d2c78a3          51 RGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD-----------GPMPQTREHILLARQ--  117 (204)
T ss_dssp             HTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTT-----------CCCHHHHHHHHHHHH--
T ss_pred             CCeEEEeeEEEEEeCCeEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCC-----------CCcHHHHHHHHHHHH--
Confidence            3445555566778899999999999999988877777889999999999986           222334444444322  


Q ss_pred             CCCCCc-EEEEeecCCccccc--c--cCCcccccCcCCC-CCCCeEEEEeecccC
Q psy8318         235 WFMDTS-IILFLNKNDLFQEK--I--TKSPLTVCFPEYT-DQKEIYTHFTCATDT  283 (313)
Q Consensus       235 ~~~~~p-iilv~NK~Dl~~~k--~--~~~~l~~~f~~~~-~~~~~~~~~tSA~~~  283 (313)
                        .++| ++++.||+|+...+  .  ...++.+.+..+. ....+.++..||..+
T Consensus       118 --~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~i~~sa~~~  170 (204)
T d2c78a3         118 --VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLA  170 (204)
T ss_dssp             --TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred             --cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCcccceeeeeechhh
Confidence              2455 78889999985422  1  1123333332111 223466788888654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.14  E-value=1.3e-10  Score=97.25  Aligned_cols=115  Identities=13%  Similarity=0.026  Sum_probs=74.1

Q ss_pred             ecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318         158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM  237 (313)
Q Consensus       158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~  237 (313)
                      |+-.....+...+..+.+.|++|+..+-..-..-..-+|++|+|+|..+.           -...+.+.+.-+ ..   .
T Consensus        76 ti~~~~~~~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G-----------~~~Qt~e~~~~~-~~---~  140 (222)
T d1zunb3          76 TIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG-----------VQTQTRRHSYIA-SL---L  140 (222)
T ss_dssp             CCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC-----------SCHHHHHHHHHH-HH---T
T ss_pred             CceeeEEEEeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccC-----------cccchHHHHHHH-HH---c
Confidence            33344455666788999999999999887777778889999999999862           112223222222 11   2


Q ss_pred             C-CcEEEEeecCCccccccc-----CCcccccCcCCC-CCCCeEEEEeecccCcCHH
Q psy8318         238 D-TSIILFLNKNDLFQEKIT-----KSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQ  287 (313)
Q Consensus       238 ~-~piilv~NK~Dl~~~k~~-----~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~  287 (313)
                      + ..++++.||+|+.+..-.     ..++..++.... ....+.+.++||.+|+||.
T Consensus       141 gv~~iiv~vNK~D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         141 GIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             TCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             CCCEEEEEEEccccccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            3 358899999998652111     112333332221 2345788999999999984

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.11  E-value=7e-11  Score=99.17  Aligned_cols=124  Identities=19%  Similarity=0.184  Sum_probs=73.5

Q ss_pred             ecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318         158 TTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM  237 (313)
Q Consensus       158 T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~  237 (313)
                      |+......++.++..+++.||+|+..|-.--..-.+-+|++|+|+|..+--+.-.+. ......+.+.....      +.
T Consensus        68 ti~~~~~~~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~-~~~qt~e~l~~~~~------~~  140 (224)
T d1jnya3          68 TINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMS-VEGQTREHIILAKT------MG  140 (224)
T ss_dssp             ------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHS-TTCHHHHHHHHHHH------TT
T ss_pred             cccceEEEEecCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCccccccc-ccchhHHHHHHHHH------hC
Confidence            333444456778899999999999998887777788899999999998621000000 01122233222222      22


Q ss_pred             CCcEEEEeecCCcccccccC-------CcccccCcCCC-CCCCeEEEEeecccCcCHHH
Q psy8318         238 DTSIILFLNKNDLFQEKITK-------SPLTVCFPEYT-DQKEIYTHFTCATDTSNIQF  288 (313)
Q Consensus       238 ~~piilv~NK~Dl~~~k~~~-------~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~  288 (313)
                      ..+++++.||+|+.......       ..+...+..+. ....+.+.++||..|.||.+
T Consensus       141 ~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         141 LDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             CTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             CCceEEEEEcccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            35789999999986421111       12222222221 23457888999999999853

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=8.1e-11  Score=99.62  Aligned_cols=124  Identities=16%  Similarity=0.063  Sum_probs=77.0

Q ss_pred             eeeecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCccccccccc--ccccHHHHHHHHHHHHh
Q psy8318         155 RVKTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDE--EMNRMIESMKLFDSICN  232 (313)
Q Consensus       155 ~~~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~--~~~~l~e~~~~~~~~~~  232 (313)
                      +.-|+......|.+.+.++++.|++|+..|-+-+..-..-+|++|+|+|.++-.   .|..  ...+..+...+...   
T Consensus        68 rGiTi~~~~~~~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~---~e~g~~~~~QT~eh~~~~~~---  141 (239)
T d1f60a3          68 RGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE---FEAGISKDGQTREHALLAFT---  141 (239)
T ss_dssp             TTCCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHH---HHHHTCTTSHHHHHHHHHHH---
T ss_pred             ceeccccceeEeccCCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCc---cccccCchHhHHHHHHHHHH---
Confidence            344556666678888999999999999999888888888999999999988510   0000  00112222222221   


Q ss_pred             CCCCCCC-cEEEEeecCCccccccc-----CCcccccCcCCC-CCCCeEEEEeecccCcCHHH
Q psy8318         233 SKWFMDT-SIILFLNKNDLFQEKIT-----KSPLTVCFPEYT-DQKEIYTHFTCATDTSNIQF  288 (313)
Q Consensus       233 ~~~~~~~-piilv~NK~Dl~~~k~~-----~~~l~~~f~~~~-~~~~~~~~~tSA~~~~~v~~  288 (313)
                          .++ +++++.||+|+.+..-.     ..++...+.... ....+.+..+||..|+|+.+
T Consensus       142 ----~gv~~iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         142 ----LGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             ----TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             ----cCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence                233 58899999997652111     122333332221 12346778999999998743

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=2.7e-10  Score=91.51  Aligned_cols=110  Identities=18%  Similarity=0.150  Sum_probs=65.6

Q ss_pred             cCceeeeEecCCCccc---------cccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCC
Q psy8318         169 KDLHFKMFDVGGQRSE---------RKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDT  239 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~---------r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~  239 (313)
                      +...+..||++|....         ......+...++.++++.|.++.          .  .....+...+..    ...
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~----------~--~~~~~~~~~l~~----~~~  114 (179)
T d1egaa1          51 GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRW----------T--PDDEMVLNKLRE----GKA  114 (179)
T ss_dssp             TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCC----------C--HHHHHHHHHHHS----SSS
T ss_pred             CCceeEeecCCCceecchhhhhhhhhhccccchhhcceeEEEEecCcc----------c--hhHHHHHHHhhh----ccC
Confidence            5556677788875321         11222234567888888887751          1  222222333322    346


Q ss_pred             cEEEEeecCCcccccccCC-cccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         240 SIILFLNKNDLFQEKITKS-PLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       240 piilv~NK~Dl~~~k~~~~-~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      |+++++||.|....+.... ........+   ....++++||++|+|+++++++|.+.+
T Consensus       115 ~~i~v~~k~d~~~~~~~~~~~~~~~~~~~---~~~~~~~vSA~~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         115 PVILAVNKVDNVQEKADLLPHLQFLASQM---NFLDIVPISAETGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             CEEEEEESTTTCCCHHHHHHHHHHHHTTS---CCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             ceeeeeeeeeccchhhhhhhHhhhhhhhc---CCCCEEEEeCcCCCCHHHHHHHHHHhC
Confidence            8999999999776532211 112222222   335789999999999999999987643

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.95  E-value=3.9e-10  Score=95.74  Aligned_cols=127  Identities=13%  Similarity=0.119  Sum_probs=64.6

Q ss_pred             eecceeEEEEEecCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCC
Q psy8318         157 KTTGIIETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWF  236 (313)
Q Consensus       157 ~T~g~~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~  236 (313)
                      .|+......+.+.+..+.+.|++|+..+-+.-..-..-++++|+|+|..+--..-.. .......+...+...+      
T Consensus        88 ~ti~~~~~~~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~-~~~~QT~e~l~l~~~~------  160 (245)
T d1r5ba3          88 KTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGF-ERGGQTREHAVLARTQ------  160 (245)
T ss_dssp             ------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTT-STTCCHHHHHHHHHHT------
T ss_pred             ccccccccccccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCcc-ccccchHHHHHHHHHc------
Confidence            344444446677888999999999999888777777889999999999861100000 0011333333333221      


Q ss_pred             CCCcEEEEeecCCcccccccC-------CcccccCcC---CCCCCCeEEEEeecccCcCHHHHH
Q psy8318         237 MDTSIILFLNKNDLFQEKITK-------SPLTVCFPE---YTDQKEIYTHFTCATDTSNIQFVF  290 (313)
Q Consensus       237 ~~~piilv~NK~Dl~~~k~~~-------~~l~~~f~~---~~~~~~~~~~~tSA~~~~~v~~~f  290 (313)
                      .-.+++++.||+|+.......       ..+..++..   +.....+.+.++||++|+||.+.+
T Consensus       161 ~i~~iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         161 GINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             TCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             CCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            123588999999986432111       112222111   111124688999999999997653

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=2.1e-09  Score=86.30  Aligned_cols=71  Identities=6%  Similarity=0.111  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccC---CcccccCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         220 MIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITK---SPLTVCFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       220 l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~---~~l~~~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      .......+.....    ...++++++||+|+....-..   ..+.+.+..+  .....++++||++|.||++++++|.+.
T Consensus       113 ~~~~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~--~~~~~~i~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         113 KDLDQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAF--NGDVQVETFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             CHHHHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG--CSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhh--CCCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence            3444555555443    356899999999976531111   1223333333  124578999999999999999988664

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=8.4e-09  Score=91.17  Aligned_cols=70  Identities=9%  Similarity=0.082  Sum_probs=56.3

Q ss_pred             cCceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecC
Q psy8318         169 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKN  248 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~  248 (313)
                      ++..++++||+|+..|..-.....+-+|++|+|||..+           .-...+...++....    .+.|+++|.||+
T Consensus        94 ~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~e-----------Gv~~qT~~~~~~a~~----~~~p~i~viNKi  158 (341)
T d1n0ua2          94 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIE-----------GVCVQTETVLRQALG----ERIKPVVVINKV  158 (341)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTT-----------BSCHHHHHHHHHHHH----TTCEEEEEEECH
T ss_pred             cceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEeccc-----------CcchhHHHHHHHHHH----cCCCeEEEEECc
Confidence            34679999999999998877788889999999999997           444556666666654    368999999999


Q ss_pred             Ccccc
Q psy8318         249 DLFQE  253 (313)
Q Consensus       249 Dl~~~  253 (313)
                      |....
T Consensus       159 Dr~~~  163 (341)
T d1n0ua2         159 DRALL  163 (341)
T ss_dssp             HHHHH
T ss_pred             ccccc
Confidence            97643

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.64  E-value=1.2e-07  Score=80.63  Aligned_cols=85  Identities=9%  Similarity=0.011  Sum_probs=50.6

Q ss_pred             cceeEEEEEecCceeeeEecCCCccccc-------ccccc--ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHH
Q psy8318         159 TGIIETHFTFKDLHFKMFDVGGQRSERK-------KWIHC--FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDS  229 (313)
Q Consensus       159 ~g~~~~~~~~~~~~~~i~D~~Gq~~~r~-------~w~~~--~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~  229 (313)
                      .......+...+..+.++||+|-.....       ....+  -.+.++++||+++++..       -...-...+..+..
T Consensus        68 ~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r-------~~~~~~~~l~~l~~  140 (257)
T d1h65a_          68 PRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYR-------VDNLDKLVAKAITD  140 (257)
T ss_dssp             SSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCC-------CCHHHHHHHHHHHH
T ss_pred             eeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCC-------CCHHHHHHHHHHHH
Confidence            3444555667889999999999532111       11111  24578999999887510       01223344455555


Q ss_pred             HHhCCCCCCCcEEEEeecCCccc
Q psy8318         230 ICNSKWFMDTSIILFLNKNDLFQ  252 (313)
Q Consensus       230 ~~~~~~~~~~piilv~NK~Dl~~  252 (313)
                      ++....  -.++++|+||.|...
T Consensus       141 ~fg~~~--~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         141 SFGKGI--WNKAIVALTHAQFSP  161 (257)
T ss_dssp             HHCGGG--GGGEEEEEECCSCCC
T ss_pred             Hcchhh--hhCEEEEEECcccCC
Confidence            543222  247899999999754

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.55  E-value=6.8e-08  Score=80.73  Aligned_cols=114  Identities=14%  Similarity=0.022  Sum_probs=62.3

Q ss_pred             ceeeeEecCCCcccccc--cccc---ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEe
Q psy8318         171 LHFKMFDVGGQRSERKK--WIHC---FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFL  245 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~r~~--w~~~---~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~  245 (313)
                      ..+.+.|++|+...-..  +...   ....+++++++|.....+       +................   -..|.+++.
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~-------~~~~~~~~l~~~~~~~~---~~~~~ivvi  164 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKK-------PNDYCFVRFFALLIDLR---LGATTIPAL  164 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCS-------HHHHHHHHHHHHHHHHH---HTSCEEEEE
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccC-------chhHhhHHHHHHHHHHH---hCCCceeee
Confidence            34677899998653221  1111   124568899999875322       11111111111111111   257999999


Q ss_pred             ecCCcccccccCC---------cccc------------------cCcCCCCCCCeEEEEeecccCcCHHHHHHHHHHH
Q psy8318         246 NKNDLFQEKITKS---------PLTV------------------CFPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDV  296 (313)
Q Consensus       246 NK~Dl~~~k~~~~---------~l~~------------------~f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~  296 (313)
                      ||+|+..+.-...         .+..                  ...++  ...+.++++||++|+|+.+++..|.+.
T Consensus       165 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         165 NKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEV--LPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             CCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHH--SCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             eccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh--CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            9999875311000         0000                  00001  134568899999999999999887663

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=8.8e-07  Score=79.93  Aligned_cols=25  Identities=20%  Similarity=0.448  Sum_probs=21.9

Q ss_pred             hhccceEEEEcCCCCchhHHHHHHH
Q psy8318           7 QEREVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus         7 ~~~~~killlG~~~sGKst~~kq~r   31 (313)
                      .+.+++|.++|.+|+|||||++.++
T Consensus        53 ~~~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          53 DSSVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             HHCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHh
Confidence            3467999999999999999999863

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=2.4e-05  Score=68.16  Aligned_cols=105  Identities=14%  Similarity=0.147  Sum_probs=59.2

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      +..+.+.+|.|.-...   ......+|.+++|.+....|+.-...          .   .++.      .+=++|.||.|
T Consensus       146 g~d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k----------~---gi~e------~aDi~VvNKaD  203 (327)
T d2p67a1         146 GYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIK----------K---GLME------VADLIVINKDD  203 (327)
T ss_dssp             TCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCC----------H---HHHH------HCSEEEECCCC
T ss_pred             CCCeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhc----------h---hhhc------cccEEEEEeec
Confidence            4567777887743211   12456789999998877654322111          1   1111      23378889999


Q ss_pred             cccccccC---Cccccc---C-cCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         250 LFQEKITK---SPLTVC---F-PEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       250 l~~~k~~~---~~l~~~---f-~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      ........   ..+...   + +.. ..+...++.|||++|+||+++++.|.+..
T Consensus       204 ~~~~~~~~~~~~~~~~al~~~~~~~-~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         204 GDNHTNVAIARHMYESALHILRRKY-DEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCCSB-TTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhhhcccCC-CCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            87532111   111111   1 111 23445799999999999999999987754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.52  E-value=0.00013  Score=63.26  Aligned_cols=106  Identities=8%  Similarity=0.007  Sum_probs=59.6

Q ss_pred             CceeeeEecCCCccccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCC
Q psy8318         170 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKND  249 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~D  249 (313)
                      ++.+-|..|.|.-.-.-   .....+|..++|.....-|+.          +-         .....-..+=++|.||.|
T Consensus       143 g~d~iiiETVG~gq~e~---~~~~~~D~~v~v~~p~~GD~i----------Q~---------~k~gilE~aDi~vvNKaD  200 (323)
T d2qm8a1         143 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDEL----------QG---------IKKGIFELADMIAVNKAD  200 (323)
T ss_dssp             TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC-------------------------CCTTHHHHCSEEEEECCS
T ss_pred             CCCeEEEeehhhhhhhh---hhhcccceEEEEeeccchhhh----------hh---------hhhhHhhhhheeeEeccc
Confidence            45666777777432211   233568999999988863211          10         001111123488999999


Q ss_pred             cccccccC----Cccccc---CcCCCCCCCeEEEEeecccCcCHHHHHHHHHHHH
Q psy8318         250 LFQEKITK----SPLTVC---FPEYTDQKEIYTHFTCATDTSNIQFVFDAVTDVI  297 (313)
Q Consensus       250 l~~~k~~~----~~l~~~---f~~~~~~~~~~~~~tSA~~~~~v~~~f~~i~~~i  297 (313)
                      +.+..-..    ......   +..-...+...++.|||++|+|+.+++++|.+..
T Consensus       201 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         201 DGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             TTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            76531111    111111   1111123455799999999999999999997765

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.19  E-value=8e-05  Score=58.23  Aligned_cols=20  Identities=35%  Similarity=0.705  Sum_probs=18.7

Q ss_pred             ceEEEEcCCCCchhHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~   30 (313)
                      +||++.|++|||||||++.+
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i   20 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKI   20 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHH
Confidence            58999999999999999986

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.03  E-value=9.2e-05  Score=57.84  Aligned_cols=27  Identities=30%  Similarity=0.516  Sum_probs=22.5

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHhcCCC
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIHETGY   38 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~~~~~   38 (313)
                      +|++.|++||||||+++.+.--++..+
T Consensus         9 ~I~i~G~~GsGKTTla~~La~~~~~~~   35 (192)
T d1lw7a2           9 TVAILGGESSGKSVLVNKLAAVFNTTS   35 (192)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            799999999999999999865554433

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.99  E-value=0.00016  Score=56.72  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~   34 (313)
                      +||+++|++||||||+.+.+---+
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            489999999999999999874434

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.92  E-value=0.00019  Score=55.37  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=19.7

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      ..+|++.|++||||||+++.+.
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La   25 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELA   25 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3589999999999999999984

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.92  E-value=0.0002  Score=56.78  Aligned_cols=24  Identities=29%  Similarity=0.477  Sum_probs=20.9

Q ss_pred             ccceEEEEcCCCCchhHHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r~   32 (313)
                      +.+||+++|++||||||+++.+--
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999999843

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=96.90  E-value=0.00016  Score=61.12  Aligned_cols=89  Identities=11%  Similarity=0.119  Sum_probs=58.7

Q ss_pred             cccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCC
Q psy8318         189 IHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYT  268 (313)
Q Consensus       189 ~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~  268 (313)
                      ....+.+|.||+|+|.-+          +-+..  -..+++++.     +.|+++|+||+|+..... .....++|.   
T Consensus        10 ~~~i~~~DvIl~V~DaR~----------P~ss~--~~~l~~~~~-----~Kp~IlVlNK~DLv~~~~-~~~w~~~f~---   68 (273)
T d1puja_          10 TEKLKLIDIVYELVDARI----------PMSSR--NPMIEDILK-----NKPRIMLLNKADKADAAV-TQQWKEHFE---   68 (273)
T ss_dssp             HHHGGGCSEEEEEEETTS----------TTTTS--CHHHHHHCS-----SSCEEEEEECGGGSCHHH-HHHHHHHHH---
T ss_pred             HHHHHhCCEEEEEEECCC----------CCCCC--CHHHHHHHc-----CCCeEEEEECccCCchHH-HHHHHHHHH---
Confidence            345789999999999865          11111  123444442     579999999999876432 222333442   


Q ss_pred             CCCCeEEEEeecccCcCHHHHHHHHHHHHHH
Q psy8318         269 DQKEIYTHFTCATDTSNIQFVFDAVTDVIIK  299 (313)
Q Consensus       269 ~~~~~~~~~tSA~~~~~v~~~f~~i~~~i~~  299 (313)
                       .......++||+++.++......+.+.+..
T Consensus        69 -~~~~~~i~isa~~~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          69 -NQGIRSLSINSVNGQGLNQIVPASKEILQE   98 (273)
T ss_dssp             -TTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             -hcCCccceeecccCCCccccchhhhhhhhh
Confidence             234567889999999988888877766554

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.88  E-value=0.0025  Score=54.64  Aligned_cols=37  Identities=27%  Similarity=0.369  Sum_probs=23.7

Q ss_pred             CceeeeEecCCCcc-------ccccccccccCCcEEEEEEecCC
Q psy8318         170 DLHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSG  206 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~-------~r~~w~~~~~~~~~iifv~dls~  206 (313)
                      ...++++|++|--.       .........+.++++++|+|.++
T Consensus        70 ~~~i~~~D~pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          70 LIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             EEEEEEEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccEEEEECCCcccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            35788999999421       23334455688999999999875

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.87  E-value=0.00023  Score=55.06  Aligned_cols=23  Identities=17%  Similarity=0.553  Sum_probs=20.9

Q ss_pred             ccceEEEEcCCCCchhHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r   31 (313)
                      +.++|++.|.+||||||+.+.+.
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La   26 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIA   26 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHH
Confidence            56799999999999999999984

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00022  Score=55.92  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~   34 (313)
                      +||+++|++||||||..+.+---+
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            489999999999999999984333

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.85  E-value=0.00025  Score=56.49  Aligned_cols=25  Identities=28%  Similarity=0.472  Sum_probs=21.9

Q ss_pred             hccceEEEEcCCCCchhHHHHHHHH
Q psy8318           8 EREVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus         8 ~~~~killlG~~~sGKst~~kq~r~   32 (313)
                      .+-+||+++|++||||||+.+.+--
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999999843

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.84  E-value=0.00026  Score=55.77  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~   34 (313)
                      +||+++|++||||||+.+.+---+
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            489999999999999999874433

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.00026  Score=55.70  Aligned_cols=25  Identities=20%  Similarity=0.442  Sum_probs=21.2

Q ss_pred             cceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~~~   34 (313)
                      .+||+++|++||||||+.+.+.--+
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999985333

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.79  E-value=0.00029  Score=55.35  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~   34 (313)
                      +||+++|++||||||+.+.+---+
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            489999999999999999985444

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.78  E-value=0.00029  Score=53.39  Aligned_cols=18  Identities=39%  Similarity=0.630  Sum_probs=16.6

Q ss_pred             EEEEcCCCCchhHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        13 illlG~~~sGKst~~kq~   30 (313)
                      |++.|++||||||+++.+
T Consensus         5 Iii~G~pGsGKTTla~~L   22 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREF   22 (152)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            678999999999999986

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.73  E-value=0.00033  Score=54.89  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=19.1

Q ss_pred             ccceEEEEcCCCCchhHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~   30 (313)
                      ...=||++|.+||||||+++++
T Consensus        13 ~p~liil~G~pGsGKST~a~~l   34 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEH   34 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH
Confidence            3456889999999999999986

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.67  E-value=0.0085  Score=50.49  Aligned_cols=70  Identities=17%  Similarity=0.264  Sum_probs=43.2

Q ss_pred             ceeeeEecCCCccc-------------cccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318         171 LHFKMFDVGGQRSE-------------RKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM  237 (313)
Q Consensus       171 ~~~~i~D~~Gq~~~-------------r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~  237 (313)
                      ..+.++|++|-...             ..++..|...++.+++++..+..         .-...+...+.+++ . +  .
T Consensus       125 ~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~---------~~~~~~~~~~~~~~-~-~--~  191 (299)
T d2akab1         125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS---------DLANSDALKIAKEV-D-P--Q  191 (299)
T ss_dssp             CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSS---------CGGGCHHHHHHHHH-C-T--T
T ss_pred             CCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeeccccc---------chhhhHHHHHHHHh-C-c--C
Confidence            56889999995321             24456677777766655544431         23334455555554 2 1  3


Q ss_pred             CCcEEEEeecCCcccc
Q psy8318         238 DTSIILFLNKNDLFQE  253 (313)
Q Consensus       238 ~~piilv~NK~Dl~~~  253 (313)
                      ..++++|+||+|...+
T Consensus       192 ~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         192 GQRTIGVITKLDLMDE  207 (299)
T ss_dssp             CSSEEEEEECGGGSCT
T ss_pred             CCceeeEEeccccccc
Confidence            4689999999997654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.66  E-value=0.0013  Score=53.06  Aligned_cols=38  Identities=8%  Similarity=0.144  Sum_probs=24.8

Q ss_pred             cCceeeeEecCCCccccccc----ccc--ccCCcEEEEEEecCC
Q psy8318         169 KDLHFKMFDVGGQRSERKKW----IHC--FEGVTAIIFCVALSG  206 (313)
Q Consensus       169 ~~~~~~i~D~~Gq~~~r~~w----~~~--~~~~~~iifv~dls~  206 (313)
                      .+..+.++||+|........    ..+  ....+-+++|.|.+.
T Consensus        91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~  134 (207)
T d1ls1a2          91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT  134 (207)
T ss_dssp             HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred             ccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEecccc
Confidence            45678999999964433222    122  234678899999875

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.63  E-value=0.00053  Score=54.21  Aligned_cols=25  Identities=32%  Similarity=0.409  Sum_probs=21.4

Q ss_pred             cceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~~~   34 (313)
                      +++|++.|++||||||+++.+.--+
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            5699999999999999999885444

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.62  E-value=0.00044  Score=53.13  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=19.0

Q ss_pred             EEEEcCCCCchhHHHHHHHHHh
Q psy8318          13 LLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~~~   34 (313)
                      |++.|.+||||||+.+++..-+
T Consensus         5 I~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            7899999999999999985443

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.60  E-value=0.0005  Score=53.03  Aligned_cols=26  Identities=27%  Similarity=0.565  Sum_probs=20.4

Q ss_pred             eEEEE-cCCCCchhHHHHHHHHHhcCC
Q psy8318          12 KLLLL-GAGESGKSTIVKQMKIIHETG   37 (313)
Q Consensus        12 killl-G~~~sGKst~~kq~r~~~~~~   37 (313)
                      ||++| |.+||||||+.+.+.-..+.+
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l~~~   30 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVLPEP   30 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            56666 999999999999986554443

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.00046  Score=52.38  Aligned_cols=21  Identities=38%  Similarity=0.575  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCchhHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~   32 (313)
                      .|++.|++||||||+.+.+--
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999843

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.60  E-value=0.00024  Score=60.86  Aligned_cols=70  Identities=17%  Similarity=0.237  Sum_probs=44.4

Q ss_pred             ceeeeEecCCCcc-------------ccccccccccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318         171 LHFKMFDVGGQRS-------------ERKKWIHCFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM  237 (313)
Q Consensus       171 ~~~~i~D~~Gq~~-------------~r~~w~~~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~  237 (313)
                      ..+.++|++|-..             ...++..|...++++|+++.....         .-...++..+.+.+ . +  .
T Consensus       131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~---------~~~~~~~~~~~~~~-~-~--~  197 (306)
T d1jwyb_         131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT---------DLANSDALQLAKEV-D-P--E  197 (306)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS---------CSTTCSHHHHHHHH-C-S--S
T ss_pred             CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccc---------cccccHHHHHHHHh-C-c--C
Confidence            5788999999532             125677788899987776644331         12223345555554 2 2  3


Q ss_pred             CCcEEEEeecCCcccc
Q psy8318         238 DTSIILFLNKNDLFQE  253 (313)
Q Consensus       238 ~~piilv~NK~Dl~~~  253 (313)
                      ..++++|.||+|...+
T Consensus       198 ~~r~i~Vitk~D~~~~  213 (306)
T d1jwyb_         198 GKRTIGVITKLDLMDK  213 (306)
T ss_dssp             CSSEEEEEECTTSSCS
T ss_pred             CCeEEEEEeccccccc
Confidence            4589999999997653

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.0005  Score=54.44  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=19.6

Q ss_pred             ceEEEEcCCCCchhHHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~   32 (313)
                      +.|+++|++||||||.++.+--
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999843

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.55  E-value=0.00059  Score=54.17  Aligned_cols=29  Identities=17%  Similarity=0.263  Sum_probs=22.0

Q ss_pred             hhhhhccceEEEEcCCCCchhHHHHHHHH
Q psy8318           4 VQWQEREVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus         4 ~~~~~~~~killlG~~~sGKst~~kq~r~   32 (313)
                      .++.+..--|+++|++||||||+++.+--
T Consensus         2 ~~~~~~~~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           2 EEKLKKSKIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             HHHHHTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34444444578999999999999998743

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.55  E-value=0.00065  Score=52.48  Aligned_cols=28  Identities=36%  Similarity=0.424  Sum_probs=22.4

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHhcCCCC
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIHETGYS   39 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~~~~~~   39 (313)
                      ||+++|.+||||||+.+.+-...+-+|-
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~~~fi   30 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALGVGLL   30 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence            7899999999999999998544444543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.47  E-value=0.00097  Score=52.03  Aligned_cols=28  Identities=29%  Similarity=0.474  Sum_probs=20.7

Q ss_pred             ceEEE-EcCCCCchhHHHHHHHH-HhcCCC
Q psy8318          11 VKLLL-LGAGESGKSTIVKQMKI-IHETGY   38 (313)
Q Consensus        11 ~kill-lG~~~sGKst~~kq~r~-~~~~~~   38 (313)
                      +||++ .|.+||||||+++.+.- +...++
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~~~~~   30 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGI   30 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            36765 69999999999999843 444444

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.43  E-value=0.00077  Score=52.02  Aligned_cols=24  Identities=25%  Similarity=0.475  Sum_probs=20.3

Q ss_pred             hccceEEEEcCCCCchhHHHHHHH
Q psy8318           8 EREVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus         8 ~~~~killlG~~~sGKst~~kq~r   31 (313)
                      ++.+-|+|.|.+||||||+.+.+.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            445668899999999999999873

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.42  E-value=0.00085  Score=53.11  Aligned_cols=23  Identities=26%  Similarity=0.314  Sum_probs=19.6

Q ss_pred             cceEEEEcCCCCchhHHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~   32 (313)
                      +.-|+++|++||||||+++++.-
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            44678999999999999999843

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.41  E-value=0.0001  Score=60.50  Aligned_cols=88  Identities=11%  Similarity=0.124  Sum_probs=51.6

Q ss_pred             ccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCCC
Q psy8318         192 FEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQK  271 (313)
Q Consensus       192 ~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~~  271 (313)
                      ..++|.+++|+++.+-+      .+...++   +++-..    ...++|.+||+||+|+..+......+......| ...
T Consensus         8 vANiD~~~iV~s~~~P~------~~~~~id---R~Lv~a----~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y-~~~   73 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPS------FSTALLD---RFLVLV----EANDIQPIICITKMDLIEDQDTEDTIQAYAEDY-RNI   73 (231)
T ss_dssp             EECCCEEEEEEESTTTT------CCHHHHH---HHHHHH----HTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHH-HHH
T ss_pred             ccccCEEEEEEECCCCC------CCHHHHH---HHHHHH----HHcCCCEEEEEecccccccHHHHHHHHHHHHHH-hhc
Confidence            46889999999886511      1122222   222111    125789999999999875422222222222223 223


Q ss_pred             CeEEEEeecccCcCHHHHHHHH
Q psy8318         272 EIYTHFTCATDTSNIQFVFDAV  293 (313)
Q Consensus       272 ~~~~~~tSA~~~~~v~~~f~~i  293 (313)
                      +..++.+||+++.|+.++..++
T Consensus        74 g~~v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          74 GYDVYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             TCCEEECCHHHHTTCTTTGGGG
T ss_pred             cccceeeecCChhHHHHHHHhh
Confidence            5678999999999887766554

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.41  E-value=0.0011  Score=51.04  Aligned_cols=28  Identities=21%  Similarity=0.476  Sum_probs=20.9

Q ss_pred             ceEE-EEcCCCCchhHHHHHH-HHHhcCCC
Q psy8318          11 VKLL-LLGAGESGKSTIVKQM-KIIHETGY   38 (313)
Q Consensus        11 ~kil-llG~~~sGKst~~kq~-r~~~~~~~   38 (313)
                      +||+ +.|.+|||||||+..+ +.+..+|+
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~L~~~g~   30 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAAAVREGW   30 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence            3676 9999999999999876 33444444

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.39  E-value=0.00071  Score=53.98  Aligned_cols=20  Identities=25%  Similarity=0.512  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      =|+|+|.+||||||+++++-
T Consensus         4 li~l~GlpgsGKSTla~~L~   23 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLT   23 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37899999999999999884

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.29  E-value=0.0084  Score=50.69  Aligned_cols=36  Identities=19%  Similarity=0.284  Sum_probs=26.6

Q ss_pred             ceeeeEecCCCcc-------ccccccccccCCcEEEEEEecCC
Q psy8318         171 LHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSG  206 (313)
Q Consensus       171 ~~~~i~D~~Gq~~-------~r~~w~~~~~~~~~iifv~dls~  206 (313)
                      ..+++.|++|-..       .........+.|+++|.|+|..+
T Consensus        75 ~~i~~~DvaGLv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          75 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccceeeeccccccccccccccHHHHHHHhhccceeEEEEeccC
Confidence            4678899998432       22345556799999999999876

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.29  E-value=0.0082  Score=50.27  Aligned_cols=36  Identities=17%  Similarity=0.182  Sum_probs=25.6

Q ss_pred             ceeeeEecCCCcc-------ccccccccccCCcEEEEEEecCC
Q psy8318         171 LHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSG  206 (313)
Q Consensus       171 ~~~~i~D~~Gq~~-------~r~~w~~~~~~~~~iifv~dls~  206 (313)
                      ..+++.|++|--.       .........+.|++++.|+|...
T Consensus        66 a~i~~~Di~GLi~ga~~g~Glg~~FL~~ir~~d~LihVVr~f~  108 (278)
T d1jala1          66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE  108 (278)
T ss_dssp             CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             eeEEEEEccccCCCcccCCCccHHHHHHHHhccceEEEeeccC
Confidence            4688899999421       22334456789999999998754

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.28  E-value=0.0013  Score=53.56  Aligned_cols=88  Identities=15%  Similarity=0.067  Sum_probs=51.6

Q ss_pred             cccCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCCCCcEEEEeecCCcccccccCCcccccCcCCCCC
Q psy8318         191 CFEGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFMDTSIILFLNKNDLFQEKITKSPLTVCFPEYTDQ  270 (313)
Q Consensus       191 ~~~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~k~~~~~l~~~f~~~~~~  270 (313)
                      -..++|.+++|+++.+-      +.+...++..+...       ...++|.+||+||+|+..+.. ...+......|  .
T Consensus         7 ~vANiD~vliV~s~~~P------~~~~~~ldR~Lv~a-------~~~~i~pvIvlnK~DL~~~~~-~~~~~~~~~~~--~   70 (225)
T d1u0la2           7 HVANVDQVILVVTVKMP------ETSTYIIDKFLVLA-------EKNELETVMVINKMDLYDEDD-LRKVRELEEIY--S   70 (225)
T ss_dssp             TEESCCEEEEEECSSTT------CCCHHHHHHHHHHH-------HHTTCEEEEEECCGGGCCHHH-HHHHHHHHHHH--T
T ss_pred             CcccCCEEEEEEeCCCC------CCCHHHHHHHHHHH-------HHcCCCEEEEEeCcccCCHHH-HHHHHHhhccc--c
Confidence            34788999999987641      11122222222111       125789999999999975321 11121212112  1


Q ss_pred             CCeEEEEeecccCcCHHHHHHHHH
Q psy8318         271 KEIYTHFTCATDTSNIQFVFDAVT  294 (313)
Q Consensus       271 ~~~~~~~tSA~~~~~v~~~f~~i~  294 (313)
                      ....++.+||+++.+++++.+++.
T Consensus        71 ~~~~v~~vSa~~~~g~~~L~~~l~   94 (225)
T d1u0la2          71 GLYPIVKTSAKTGMGIEELKEYLK   94 (225)
T ss_dssp             TTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             cceeEEEeccccchhHhhHHHHhc
Confidence            224688999999999988777653

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.00093  Score=51.17  Aligned_cols=18  Identities=28%  Similarity=0.510  Sum_probs=16.8

Q ss_pred             EEEEcCCCCchhHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        13 illlG~~~sGKst~~kq~   30 (313)
                      +.+.|.+|||||||++.+
T Consensus         5 i~itG~~GSGKTTL~~~L   22 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKL   22 (170)
T ss_dssp             EEEECCTTSCHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHH
Confidence            678999999999999997

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0012  Score=51.08  Aligned_cols=19  Identities=26%  Similarity=0.557  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .|++.|.+||||||+++++
T Consensus         3 ~v~ItG~~GtGKTtl~~~i   21 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKA   21 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHH
Confidence            4799999999999999987

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.15  E-value=0.0012  Score=51.17  Aligned_cols=20  Identities=20%  Similarity=0.532  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .|+++|.+||||||+.+.+-
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999983

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.0012  Score=50.63  Aligned_cols=20  Identities=30%  Similarity=0.562  Sum_probs=17.2

Q ss_pred             EEEEcCCCCchhHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~   32 (313)
                      +++.|.+||||||+.+.+.-
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56799999999999999743

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.09  E-value=0.0013  Score=50.49  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHhcCC
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIHETG   37 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~~~~   37 (313)
                      +|+++|.+||||||+.|.+---.+-+
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~   27 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLV   27 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            48999999999999999984333333

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.06  E-value=0.0015  Score=51.20  Aligned_cols=20  Identities=35%  Similarity=0.599  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~   32 (313)
                      |+++|++||||||+++.+.-
T Consensus         5 ivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            57889999999999999753

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.04  E-value=0.0014  Score=51.86  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      -|+++|++||||||+.+.+---+
T Consensus        10 iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47799999999999999984333

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.03  E-value=0.0016  Score=51.37  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchhHHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~~   33 (313)
                      |+++|++||||||+.++|.--
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999998543

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.99  E-value=0.0019  Score=51.14  Aligned_cols=23  Identities=35%  Similarity=0.551  Sum_probs=19.6

Q ss_pred             EEEEcCCCCchhHHHHHHHHHhc
Q psy8318          13 LLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~~~~   35 (313)
                      |+++|++||||||+++++.--+.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            79999999999999999754444

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.86  E-value=0.0018  Score=49.72  Aligned_cols=19  Identities=53%  Similarity=0.658  Sum_probs=16.6

Q ss_pred             EEEEcCCCCchhHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r   31 (313)
                      |++.|.+||||||+.+.+.
T Consensus         7 I~l~G~~GsGKSTia~~La   25 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALA   25 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5688999999999998874

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0021  Score=50.33  Aligned_cols=20  Identities=35%  Similarity=0.527  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~   32 (313)
                      |+++|++|||||||++.+.-
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999998743

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.84  E-value=0.002  Score=49.91  Aligned_cols=19  Identities=16%  Similarity=0.232  Sum_probs=16.6

Q ss_pred             EEEEcCCCCchhHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r   31 (313)
                      |++.|.+||||||+++.+.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4567999999999999984

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.55  E-value=0.003  Score=51.97  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=19.4

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~   33 (313)
                      -++.++|.+|||||||++-+--+
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            37899999999999999987433

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0017  Score=50.84  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=18.9

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      .+-|+|.|.+||||||+.+-+.
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3567788999999999999884

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.52  E-value=0.003  Score=51.81  Aligned_cols=20  Identities=30%  Similarity=0.481  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+.++|++||||||++|.+-
T Consensus        26 ~~~liGpnGaGKSTll~~i~   45 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIA   45 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHH
Confidence            45689999999999999864

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.51  E-value=0.0031  Score=50.39  Aligned_cols=19  Identities=26%  Similarity=0.457  Sum_probs=17.1

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|++|||||||++-+
T Consensus        29 i~~l~G~NGsGKSTLl~~i   47 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTI   47 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHH
Confidence            4679999999999999886

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.46  E-value=0.0033  Score=51.41  Aligned_cols=20  Identities=25%  Similarity=0.561  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+.++|++||||||+++.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~   47 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIA   47 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHh
Confidence            46799999999999998763

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.39  E-value=0.0043  Score=48.44  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=19.7

Q ss_pred             cceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~~~   34 (313)
                      .+=|.+-|++|||||||++++.-..
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~~l   46 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQTL   46 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3335589999999999999986443

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.25  E-value=0.0043  Score=51.05  Aligned_cols=20  Identities=30%  Similarity=0.473  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      ++.++|.+|||||||++-+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~   49 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLE   49 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            78899999999999998863

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0043  Score=51.33  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      ++.++|.+|||||||++-+--++
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            78999999999999999874333

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.24  E-value=0.0042  Score=51.50  Aligned_cols=23  Identities=35%  Similarity=0.442  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      ++.++|.+|||||||++-+--++
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            78999999999999998874333

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.24  E-value=0.0043  Score=50.62  Aligned_cols=20  Identities=30%  Similarity=0.498  Sum_probs=17.3

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+.++|.+||||||+++-+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~   52 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIG   52 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHT
T ss_pred             EEEEECCCCCCcchhhHhcc
Confidence            46799999999999988763

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.12  E-value=0.0047  Score=50.69  Aligned_cols=20  Identities=30%  Similarity=0.516  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+.++|.+||||||+++-+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~   52 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVN   52 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            46799999999999988863

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.12  E-value=0.0048  Score=50.56  Aligned_cols=20  Identities=35%  Similarity=0.599  Sum_probs=17.6

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+.++|++||||||+++.+-
T Consensus        34 ~~~liGpsGaGKSTLl~~i~   53 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIA   53 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHH
Confidence            47899999999999999863

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.10  E-value=0.0034  Score=49.45  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=22.4

Q ss_pred             hhhccceEEEEcCCCCchhHHHHHHH
Q psy8318           6 WQEREVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus         6 ~~~~~~killlG~~~sGKst~~kq~r   31 (313)
                      +..+++=|++-|..||||||+++.++
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~   30 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFE   30 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHH
Confidence            34567789999999999999999975

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.00  E-value=0.0059  Score=48.86  Aligned_cols=21  Identities=14%  Similarity=0.362  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchhHHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~~   33 (313)
                      |+++|++|||||||.+.+.--
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678899999999999987543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.97  E-value=0.0056  Score=51.53  Aligned_cols=19  Identities=26%  Similarity=0.489  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+.++|.+|||||||++-+
T Consensus        64 ~vaivG~nGsGKSTLl~~i   82 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLI   82 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHH
Confidence            6889999999999999876

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.92  E-value=0.0077  Score=49.55  Aligned_cols=26  Identities=23%  Similarity=0.250  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHhcCC
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIHETG   37 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~~~~   37 (313)
                      -|||.|++||||||+.+.+---.+.+
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~~~~~   59 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEETQGN   59 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhcc
Confidence            38999999999999999874333333

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=94.88  E-value=0.0062  Score=49.94  Aligned_cols=20  Identities=30%  Similarity=0.595  Sum_probs=17.6

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+-++|.+||||||+++-+-
T Consensus        31 ~~~liG~sGaGKSTll~~i~   50 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIA   50 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHh
Confidence            57799999999999988763

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=94.86  E-value=0.0044  Score=50.47  Aligned_cols=20  Identities=20%  Similarity=0.486  Sum_probs=17.6

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+.++|++||||||+++-+-
T Consensus        28 ~~~liGpsGaGKSTll~~l~   47 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIA   47 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHh
Confidence            46799999999999999874

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.83  E-value=0.0049  Score=51.09  Aligned_cols=21  Identities=24%  Similarity=0.477  Sum_probs=18.3

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      -++.++|.+|||||||++-+-
T Consensus        45 e~vaivG~sGsGKSTLl~ll~   65 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIP   65 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTT
T ss_pred             CEEEEECCCCCcHHHHHHHHH
Confidence            378999999999999988753

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.65  E-value=0.0082  Score=48.01  Aligned_cols=26  Identities=27%  Similarity=0.373  Sum_probs=20.7

Q ss_pred             cceEEEEcCCCCchhHHHHHHHHHhc
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r~~~~   35 (313)
                      .+.|.+-|++||||||..+.+---++
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45677779999999999999854443

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=94.63  E-value=0.0057  Score=49.93  Aligned_cols=19  Identities=42%  Similarity=0.665  Sum_probs=16.9

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      -+.++|.+||||||+++.+
T Consensus        27 i~~iiG~nGaGKSTLl~~l   45 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARM   45 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHH
Confidence            4679999999999998876

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.59  E-value=0.0044  Score=50.92  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCchhHHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~   33 (313)
                      .+.++|.+||||||+++-+--+
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            5789999999999999987533

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=94.50  E-value=0.0096  Score=46.53  Aligned_cols=22  Identities=27%  Similarity=0.377  Sum_probs=18.6

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      ++=|-+.|+.||||||+++.++
T Consensus         3 p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4456688999999999999875

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=94.42  E-value=0.0093  Score=48.90  Aligned_cols=19  Identities=32%  Similarity=0.567  Sum_probs=16.7

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      -+.++|++||||||+++-+
T Consensus        34 i~~liGpnGaGKSTl~~~i   52 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAI   52 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHH
Confidence            3679999999999998876

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.013  Score=46.51  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=19.4

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHHh
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~~   34 (313)
                      +=|-+-|++|||||||.+.+.-..
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            446688999999999999985443

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.22  E-value=0.011  Score=49.06  Aligned_cols=19  Identities=32%  Similarity=0.601  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      -+.++|.+||||||+++-+
T Consensus        30 i~~iiG~sGsGKSTLl~~i   48 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCI   48 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHH
Confidence            5779999999999999986

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.11  E-value=0.011  Score=50.26  Aligned_cols=21  Identities=24%  Similarity=0.594  Sum_probs=18.8

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      --+|++|++|+|||.++|++-
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA   70 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLA   70 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHh
Confidence            458999999999999999973

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=94.00  E-value=0.013  Score=47.99  Aligned_cols=18  Identities=28%  Similarity=0.562  Sum_probs=16.0

Q ss_pred             EEEEcCCCCchhHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        13 illlG~~~sGKst~~kq~   30 (313)
                      +-++|++||||||+++-+
T Consensus        31 ~glvG~nGaGKSTLl~~l   48 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRII   48 (238)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            459999999999998875

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.98  E-value=0.013  Score=48.46  Aligned_cols=18  Identities=39%  Similarity=0.726  Sum_probs=16.4

Q ss_pred             EEEEcCCCCchhHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        13 illlG~~~sGKst~~kq~   30 (313)
                      +.++|++||||||+++-+
T Consensus        33 ~~liG~nGaGKSTLl~~i   50 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVI   50 (254)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            579999999999999886

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=93.89  E-value=0.015  Score=46.29  Aligned_cols=20  Identities=35%  Similarity=0.385  Sum_probs=16.9

Q ss_pred             EEEEcCCCCchhHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~   32 (313)
                      |-+.|..||||||+++.++-
T Consensus         6 IgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           6 VALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCcCCHHHHHHHHHH
Confidence            34899999999999998753

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.77  E-value=0.016  Score=46.85  Aligned_cols=20  Identities=20%  Similarity=0.328  Sum_probs=17.8

Q ss_pred             ceEEEEcCCCCchhHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~   30 (313)
                      -..+++|.+|+|||||++.+
T Consensus        96 kt~~~~G~SGVGKSTLiN~L  115 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAI  115 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHhh
Confidence            36789999999999999986

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=93.74  E-value=0.019  Score=45.50  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhHHHHHHHHHhc
Q psy8318          13 LLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~~~~   35 (313)
                      |++.|++||||||..+.+---|+
T Consensus         6 I~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            34559999999999999854443

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.73  E-value=0.017  Score=45.46  Aligned_cols=20  Identities=25%  Similarity=0.509  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -|++-|..||||||+++.+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~   21 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLS   21 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47888999999999999875

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.70  E-value=0.028  Score=50.21  Aligned_cols=37  Identities=19%  Similarity=0.482  Sum_probs=28.4

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHhcCCCChHHHhhhHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIHETGYSKEECEQYRP   48 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~~~~~~~~e~~~~~~   48 (313)
                      .|||+|++|||||-+++.+-.+-+-||...+...|..
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTe   87 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE   87 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC-
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeee
Confidence            6999999999999999999555566666655555544

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.69  E-value=0.015  Score=46.72  Aligned_cols=19  Identities=32%  Similarity=0.466  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+|+.|++|+||||+++-+
T Consensus        47 ~lll~Gp~G~GKTtla~~i   65 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALAL   65 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHH
Confidence            4899999999999999876

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.69  E-value=0.015  Score=47.57  Aligned_cols=20  Identities=40%  Similarity=0.484  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+++.|.+|+||||+++++.
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~   50 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGI   50 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            46788999999999999873

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=93.63  E-value=0.016  Score=46.80  Aligned_cols=20  Identities=30%  Similarity=0.486  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+|+.|++|+||||+++.+-
T Consensus        37 ~~L~~GPpGtGKT~lA~~la   56 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIA   56 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            58999999999999999874

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.52  E-value=0.017  Score=47.34  Aligned_cols=21  Identities=33%  Similarity=0.578  Sum_probs=18.7

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      ..||+.|++|+|||++++.+-
T Consensus        41 ~~vLL~GppGtGKT~la~alA   61 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIA   61 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHh
Confidence            459999999999999999873

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.44  E-value=0.018  Score=48.09  Aligned_cols=19  Identities=47%  Similarity=0.543  Sum_probs=16.9

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      -|.+.|.||.||||+++++
T Consensus        46 ~v~I~GmgGiGKTtLA~~v   64 (277)
T d2a5yb3          46 FLFLHGRAGSGKSVIASQA   64 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3569999999999999986

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=93.42  E-value=0.021  Score=45.54  Aligned_cols=22  Identities=36%  Similarity=0.589  Sum_probs=18.9

Q ss_pred             ccceEEEEcCCCCchhHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~   30 (313)
                      +..=|.+.|.+||||||+.+-+
T Consensus        23 kg~vIwltGlsGsGKTTia~~L   44 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVEL   44 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHH
Confidence            4445889999999999999887

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.38  E-value=0.02  Score=45.47  Aligned_cols=19  Identities=21%  Similarity=0.347  Sum_probs=16.8

Q ss_pred             EEEEcCCCCchhHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r   31 (313)
                      |++-|..||||||+++.+.
T Consensus         5 IviEG~dGsGKsT~~~~L~   23 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVV   23 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5667999999999999985

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.019  Score=44.87  Aligned_cols=19  Identities=21%  Similarity=0.392  Sum_probs=17.3

Q ss_pred             EEEEcCCCCchhHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r   31 (313)
                      +++.|.+|||||||+-|+-
T Consensus        26 ~~i~G~~GsGKT~l~l~la   44 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLA   44 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5799999999999999974

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.34  E-value=0.019  Score=46.83  Aligned_cols=21  Identities=24%  Similarity=0.438  Sum_probs=18.8

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      -.+++.|++|+||||+++.+-
T Consensus        44 ~~lll~GppGtGKT~l~~~l~   64 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLW   64 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHH
Confidence            368999999999999999874

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.27  E-value=0.019  Score=46.03  Aligned_cols=18  Identities=28%  Similarity=0.434  Sum_probs=16.8

Q ss_pred             EEEEcCCCCchhHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        13 illlG~~~sGKst~~kq~   30 (313)
                      +++.|.+|||||||+-|+
T Consensus        37 ~li~G~pGsGKT~l~lq~   54 (251)
T d1szpa2          37 TELFGEFRTGKSQLCHTL   54 (251)
T ss_dssp             EEEEESTTSSHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHH
Confidence            688999999999999997

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=93.16  E-value=0.0079  Score=46.75  Aligned_cols=24  Identities=25%  Similarity=0.224  Sum_probs=20.1

Q ss_pred             EEEEcCCCCchhHHHHHHHHHhcC
Q psy8318          13 LLLLGAGESGKSTIVKQMKIIHET   36 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~~~~~   36 (313)
                      .+++|.+|||||||+.-+..+..+
T Consensus        27 tvi~G~NGsGKStil~Ai~~~L~g   50 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVTALIP   50 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcC
Confidence            367899999999999999876544

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.07  E-value=0.022  Score=46.12  Aligned_cols=19  Identities=21%  Similarity=0.317  Sum_probs=17.3

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      =+++.|++|||||||.-|+
T Consensus        38 ~~li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHH
Confidence            3689999999999999997

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=93.03  E-value=0.023  Score=45.95  Aligned_cols=20  Identities=35%  Similarity=0.557  Sum_probs=18.1

Q ss_pred             ceEEEEcCCCCchhHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~   30 (313)
                      -.+|+.|++|+||||+++-+
T Consensus        36 ~~~Ll~GPpG~GKTtla~~l   55 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVI   55 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHH
Confidence            46899999999999999876

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=92.91  E-value=0.024  Score=46.46  Aligned_cols=20  Identities=25%  Similarity=0.527  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      -+|+.|++|+|||++++.+-
T Consensus        44 giLl~GppGtGKT~la~aia   63 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVA   63 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHH
Confidence            49999999999999999974

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.85  E-value=0.021  Score=46.38  Aligned_cols=19  Identities=37%  Similarity=0.559  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+|+.|++|+||||+++.+
T Consensus        35 ~lll~Gp~G~GKTt~~~~l   53 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMAL   53 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTH
T ss_pred             eEEEECCCCCCHHHHHHHH
Confidence            5899999999999999986

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.81  E-value=0.026  Score=45.87  Aligned_cols=19  Identities=26%  Similarity=0.380  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+|+.|++|+||||+++.+
T Consensus        54 ~lll~GPpG~GKTt~a~~l   72 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLV   72 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHH
Confidence            5899999999999999986

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.72  E-value=0.04  Score=46.27  Aligned_cols=30  Identities=20%  Similarity=0.360  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCchhHHHHH--HHHHhcCCCChH
Q psy8318          12 KLLLLGAGESGKSTIVKQ--MKIIHETGYSKE   41 (313)
Q Consensus        12 killlG~~~sGKst~~kq--~r~~~~~~~~~~   41 (313)
                      .+++.|++||||||.+-.  .+++...+..++
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~   57 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPW   57 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHHHHTTCCCGG
T ss_pred             CEEEEecCCccHHHHHHHHHHHHHHcCCCCHH
Confidence            589999999999987643  244555444443

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=92.68  E-value=0.026  Score=48.28  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=18.5

Q ss_pred             cceEEEEcCCCCchhHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~   30 (313)
                      ...||+.|+.||||||+++-+
T Consensus       166 ~~nili~G~tgSGKTT~l~al  186 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSI  186 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHH
T ss_pred             CCCEEEEeeccccchHHHHHH
Confidence            346999999999999999875

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.44  E-value=0.031  Score=45.02  Aligned_cols=22  Identities=36%  Similarity=0.397  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCchhHHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~   33 (313)
                      -|++=|..||||||++++++-.
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4678899999999999998643

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.44  E-value=0.031  Score=44.80  Aligned_cols=19  Identities=21%  Similarity=0.548  Sum_probs=17.3

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+++.|++|+||||+++.+
T Consensus        35 ~lll~Gp~G~GKTtl~~~i   53 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILAL   53 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHH
Confidence            4899999999999999886

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=92.26  E-value=0.036  Score=43.77  Aligned_cols=20  Identities=35%  Similarity=0.320  Sum_probs=17.3

Q ss_pred             EEEEcCCCCchhHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~   32 (313)
                      |-+.|..||||||+++.++-
T Consensus         5 IgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            55899999999999998753

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=92.21  E-value=0.034  Score=45.84  Aligned_cols=20  Identities=25%  Similarity=0.556  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .+|+.|++|+|||++++.+-
T Consensus        47 ~iLL~GppGtGKT~la~~iA   66 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIA   66 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHH
Confidence            48999999999999999874

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.17  E-value=0.03  Score=46.89  Aligned_cols=22  Identities=32%  Similarity=0.578  Sum_probs=19.3

Q ss_pred             EEEcCCCCchhHHHHHHHHHhc
Q psy8318          14 LLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        14 lllG~~~sGKst~~kq~r~~~~   35 (313)
                      +++|..||||||+++-+..+.+
T Consensus        28 vlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             EEECCTTTCSTHHHHHHHHTSC
T ss_pred             EEECCCCCcHHHHHHHHHHHhC
Confidence            7899999999999999877654

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.04  E-value=0.036  Score=44.21  Aligned_cols=19  Identities=26%  Similarity=0.576  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+|+.|++|+||||+++.+
T Consensus        37 ~lLl~Gp~G~GKttl~~~l   55 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVAL   55 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHH
Confidence            5899999999999999986

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=92.01  E-value=0.04  Score=45.73  Aligned_cols=23  Identities=30%  Similarity=0.697  Sum_probs=20.9

Q ss_pred             ccceEEEEcCCCCchhHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r   31 (313)
                      ..++|.++|-+++|||||++.++
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~  133 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLA  133 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CceEEEEEecCccchhhhhhhhh
Confidence            57899999999999999999864

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=92.00  E-value=0.041  Score=46.55  Aligned_cols=27  Identities=19%  Similarity=0.244  Sum_probs=22.3

Q ss_pred             hccceEEEEcCCCCchhHHHHHHHHHh
Q psy8318           8 EREVKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus         8 ~~~~killlG~~~sGKst~~kq~r~~~   34 (313)
                      +.++=|-+-|++|||||||.+.++.+-
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL  104 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHH
Confidence            445667799999999999999987654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.98  E-value=0.016  Score=47.01  Aligned_cols=19  Identities=21%  Similarity=0.485  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      ..+++|.+|+|||||++.+
T Consensus        99 ~~vl~G~SGVGKSSLiN~L  117 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAI  117 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHhh
Confidence            5689999999999999986

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.97  E-value=0.037  Score=45.51  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCchhHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~   32 (313)
                      .+|+.|++|+|||++++.+-.
T Consensus        40 giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHH
Confidence            599999999999999998743

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.76  E-value=0.025  Score=45.51  Aligned_cols=20  Identities=40%  Similarity=0.511  Sum_probs=17.6

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      .|++-|..||||||+++.+.
T Consensus         4 ~I~ieG~dGsGKST~~~~L~   23 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILK   23 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTG
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            46788999999999999874

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.72  E-value=0.044  Score=43.52  Aligned_cols=19  Identities=32%  Similarity=0.545  Sum_probs=15.6

Q ss_pred             EEEEcCCCCchhHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r   31 (313)
                      |++-|..||||||.++.+.
T Consensus         6 I~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4455999999999988874

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=91.71  E-value=0.041  Score=44.00  Aligned_cols=19  Identities=32%  Similarity=0.275  Sum_probs=17.3

Q ss_pred             EEEEcCCCCchhHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r   31 (313)
                      +++.|.+|+|||||+-|+-
T Consensus        37 ~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          37 TEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            6789999999999999984

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.66  E-value=0.043  Score=43.75  Aligned_cols=19  Identities=26%  Similarity=0.440  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .+|+.|++|+||||+++-+
T Consensus        38 ~~ll~Gp~G~GKTt~a~~l   56 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCL   56 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHH
Confidence            5899999999999998865

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=91.63  E-value=0.042  Score=44.19  Aligned_cols=20  Identities=30%  Similarity=0.476  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      =+++.|.+|||||+|+.|+-
T Consensus        28 l~li~G~pGsGKT~l~~qia   47 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFV   47 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            36899999999999999984

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.57  E-value=0.049  Score=42.80  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=19.6

Q ss_pred             ccceEEEEcCCCCchhHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~   30 (313)
                      ..-.+|++|.+|+|||++++.+
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~L   63 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGL   63 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHH
Confidence            3457999999999999999987

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.46  E-value=0.045  Score=44.02  Aligned_cols=20  Identities=15%  Similarity=0.195  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCchhHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r   31 (313)
                      =+++.|.+|||||+|+-|+-
T Consensus        39 ~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            36899999999999999984

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=91.38  E-value=0.034  Score=46.30  Aligned_cols=30  Identities=27%  Similarity=0.584  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCchhHHHHH-H-HHHhcCCCChH
Q psy8318          12 KLLLLGAGESGKSTIVKQ-M-KIIHETGYSKE   41 (313)
Q Consensus        12 killlG~~~sGKst~~kq-~-r~~~~~~~~~~   41 (313)
                      .++++|++||||||.+=. + .+++..+..+.
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~   47 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKIAHLIRGCGYQAR   47 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHHHHHCCCGG
T ss_pred             CEEEEeeCCccHHHHHHHHHHHHHHhcCCChh
Confidence            478999999999987532 2 33444444433

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.35  E-value=0.05  Score=45.04  Aligned_cols=22  Identities=32%  Similarity=0.549  Sum_probs=19.5

Q ss_pred             ccceEEEEcCCCCchhHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~   30 (313)
                      ..-.+||+|.+|+|||++++.+
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~l   59 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGL   59 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHH
Confidence            3447999999999999999987

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=91.29  E-value=0.054  Score=41.04  Aligned_cols=19  Identities=32%  Similarity=0.461  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      =|+|-|.-|||||||+|.+
T Consensus        35 ii~L~G~LGaGKTtfvr~~   53 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTRGM   53 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEecCCCccHHHHHHHH
Confidence            4778999999999999986

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.26  E-value=0.045  Score=45.21  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCchhHHHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~   32 (313)
                      -||+.|++|+|||++++.+--
T Consensus        43 giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcchhHHHHHHH
Confidence            599999999999999999743

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=90.93  E-value=0.045  Score=43.62  Aligned_cols=66  Identities=14%  Similarity=0.181  Sum_probs=38.5

Q ss_pred             CceeeeEecCCCccc-------ccccccccc-----CCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318         170 DLHFKMFDVGGQRSE-------RKKWIHCFE-----GVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM  237 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~-------r~~w~~~~~-----~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~  237 (313)
                      +..+-++||+|....       -+.+....+     ...-+++|.|.+.-         .+.+.++...|+.+ .     
T Consensus        91 ~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~---------~~~~~~~~~~~~~~-~-----  155 (211)
T d2qy9a2          91 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG---------QNAVSQAKLFHEAV-G-----  155 (211)
T ss_dssp             TCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT---------HHHHHHHHHHHHHS-C-----
T ss_pred             CCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccC---------cchHHHHhhhhhcc-C-----
Confidence            456788999994221       122222222     24578899998851         34455555555543 1     


Q ss_pred             CCcEEEEeecCCccc
Q psy8318         238 DTSIILFLNKNDLFQ  252 (313)
Q Consensus       238 ~~piilv~NK~Dl~~  252 (313)
                        +==++++|.|-..
T Consensus       156 --~~~lIlTKlDe~~  168 (211)
T d2qy9a2         156 --LTGITLTKLDGTA  168 (211)
T ss_dssp             --CCEEEEECCTTCT
T ss_pred             --CceEEEeecCCCC
Confidence              2247799999543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=90.87  E-value=0.052  Score=43.35  Aligned_cols=23  Identities=22%  Similarity=0.476  Sum_probs=18.4

Q ss_pred             hccceEEEEcCCCCchhHHHHHH
Q psy8318           8 EREVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus         8 ~~~~killlG~~~sGKst~~kq~   30 (313)
                      ..+.-|+++|+.||||||.+=-+
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKL   31 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKL   31 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHH
Confidence            45667889999999999976544

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=90.81  E-value=0.05  Score=43.24  Aligned_cols=65  Identities=11%  Similarity=0.115  Sum_probs=39.2

Q ss_pred             CceeeeEecCCCcccccc----ccccc--------cCCcEEEEEEecCCcccccccccccccHHHHHHHHHHHHhCCCCC
Q psy8318         170 DLHFKMFDVGGQRSERKK----WIHCF--------EGVTAIIFCVALSGYDSVLAEDEEMNRMIESMKLFDSICNSKWFM  237 (313)
Q Consensus       170 ~~~~~i~D~~Gq~~~r~~----w~~~~--------~~~~~iifv~dls~~d~~~~e~~~~~~l~e~~~~~~~~~~~~~~~  237 (313)
                      +..+.++||+|.......    +..+.        ...+-+++|+|.+.-         .+.+.++...|+.+ .     
T Consensus        88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~---------~~~~~~~~~~~~~~-~-----  152 (207)
T d1okkd2          88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG---------QNGLEQAKKFHEAV-G-----  152 (207)
T ss_dssp             TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC---------THHHHHHHHHHHHH-C-----
T ss_pred             CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccC---------chHHHHHHHhhhcc-C-----
Confidence            457889999996433321    11111        134678899998851         45566666666654 1     


Q ss_pred             CCcEEEEeecCCcc
Q psy8318         238 DTSIILFLNKNDLF  251 (313)
Q Consensus       238 ~~piilv~NK~Dl~  251 (313)
                        +=-++++|.|-.
T Consensus       153 --~~~lI~TKlDet  164 (207)
T d1okkd2         153 --LTGVIVTKLDGT  164 (207)
T ss_dssp             --CSEEEEECTTSS
T ss_pred             --CceEEEeccCCC
Confidence              224679999954

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.62  E-value=0.039  Score=45.08  Aligned_cols=17  Identities=29%  Similarity=0.259  Sum_probs=14.8

Q ss_pred             EEEcCCCCchhHHHHHH
Q psy8318          14 LLLGAGESGKSTIVKQM   30 (313)
Q Consensus        14 lllG~~~sGKst~~kq~   30 (313)
                      ++.|++|+||||+++.+
T Consensus        50 ~l~GppGtGKT~l~~~l   66 (287)
T d1w5sa2          50 GSIGRVGIGKTTLAKFT   66 (287)
T ss_dssp             ECTTCCSSSHHHHHHHH
T ss_pred             EeECCCCCCHHHHHHHH
Confidence            44599999999999986

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=90.38  E-value=0.055  Score=46.04  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCCchhHHHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r~~   33 (313)
                      -.||+.|.+|+||||++|-+.-+
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~i   51 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAAL   51 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHHh
Confidence            46999999999999999988543

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.28  E-value=0.053  Score=45.31  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=15.6

Q ss_pred             EEEEcCCCCchhHHHHHHHHHh
Q psy8318          13 LLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~~~   34 (313)
                      |-+-|++||||||+.+.+.-+.
T Consensus         7 IgIaG~SGSGKTTva~~l~~i~   28 (288)
T d1a7ja_           7 ISVTGSSGAGTSTVKHTFDQIF   28 (288)
T ss_dssp             EEEESCC---CCTHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            6789999999999999885443

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=90.15  E-value=0.07  Score=42.21  Aligned_cols=19  Identities=26%  Similarity=0.405  Sum_probs=17.0

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      =+++.|.+|||||+|+-|+
T Consensus        28 ~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHH
Confidence            4678899999999999986

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.98  E-value=0.08  Score=42.05  Aligned_cols=19  Identities=26%  Similarity=0.452  Sum_probs=16.9

Q ss_pred             EEEEcCCCCchhHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r   31 (313)
                      |++=|..||||||.++.+.
T Consensus         6 I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            6788999999999999874

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=89.97  E-value=0.056  Score=46.85  Aligned_cols=27  Identities=22%  Similarity=0.393  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHhcCCC
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIHETGY   38 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~~~~~   38 (313)
                      .+|++|+.|+|||-+.|++-.+...+|
T Consensus        70 niLfiGPTGvGKTElAk~LA~~~~~~~   96 (364)
T d1um8a_          70 NILLIGPTGSGKTLMAQTLAKHLDIPI   96 (364)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred             ceeeeCCCCccHHHHHHHHHhhcccce
Confidence            489999999999999999844444344

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.85  E-value=0.095  Score=42.09  Aligned_cols=19  Identities=37%  Similarity=0.622  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r   31 (313)
                      +++-|++.|||||++||+-
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6899999999999999974

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.67  E-value=0.074  Score=42.60  Aligned_cols=18  Identities=33%  Similarity=0.564  Sum_probs=15.1

Q ss_pred             EEEEcCCCCchhHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        13 illlG~~~sGKst~~kq~   30 (313)
                      .|+-|--|||||||++++
T Consensus         6 ~iitGFLGaGKTTll~~l   23 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHI   23 (222)
T ss_dssp             EEEEESSSSSCHHHHHHH
T ss_pred             EEEeeCCCCCHHHHHHHH
Confidence            356677999999999986

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.63  E-value=0.1  Score=42.18  Aligned_cols=19  Identities=37%  Similarity=0.594  Sum_probs=17.2

Q ss_pred             EEEEcCCCCchhHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r   31 (313)
                      +|+-|++.|||||++||+-
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            5788999999999999974

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=89.57  E-value=0.067  Score=42.61  Aligned_cols=22  Identities=23%  Similarity=0.428  Sum_probs=13.1

Q ss_pred             ccceEEEEcCCCCchhHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~   30 (313)
                      .+.-|+++|+.||||||.+=-|
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKL   32 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKL   32 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH
Confidence            4555778999999999975544

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=89.37  E-value=0.096  Score=40.36  Aligned_cols=19  Identities=26%  Similarity=0.438  Sum_probs=16.8

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      =||+.|.+|+||||+.-.+
T Consensus        16 gvl~~G~sG~GKStlal~l   34 (176)
T d1kkma_          16 GVLITGDSGVGKSETALEL   34 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHH
Confidence            5899999999999998664

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=89.20  E-value=0.096  Score=40.39  Aligned_cols=20  Identities=35%  Similarity=0.453  Sum_probs=17.2

Q ss_pred             ceEEEEcCCCCchhHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~   30 (313)
                      .=||+.|.+|+||||+.-.+
T Consensus        16 ~gvli~G~sG~GKS~lal~l   35 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDL   35 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHH
Confidence            35899999999999998664

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=88.47  E-value=0.1  Score=45.77  Aligned_cols=19  Identities=37%  Similarity=0.698  Sum_probs=17.0

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      .++++|++|||||++++.+
T Consensus        52 H~~I~G~tGsGKT~~l~~l   70 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLREL   70 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHH
Confidence            5899999999999998765

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=88.44  E-value=0.11  Score=42.52  Aligned_cols=19  Identities=32%  Similarity=0.494  Sum_probs=17.0

Q ss_pred             EEEEcCCCCchhHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r   31 (313)
                      +++.|.+|+|||||+-|+-
T Consensus        38 ~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            6788999999999999984

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=88.25  E-value=0.12  Score=43.72  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHhc
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIHE   35 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~~   35 (313)
                      -+|++|++|+|||.+.+++-...+
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCcchhHHHHHHHHhhcc
Confidence            588999999999999999854433

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=88.23  E-value=0.11  Score=42.31  Aligned_cols=20  Identities=30%  Similarity=0.406  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhHHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r~   32 (313)
                      .++.|.+|+|||||+-|+-.
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56899999999999999843

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.22  E-value=0.13  Score=42.93  Aligned_cols=22  Identities=27%  Similarity=0.292  Sum_probs=17.5

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      ++=|-+-|+.||||||+...+.
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEeECCCCCCHHHHHHHHH
Confidence            4444578999999999999873

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.88  E-value=0.13  Score=44.45  Aligned_cols=21  Identities=24%  Similarity=0.539  Sum_probs=18.5

Q ss_pred             EEEcCCCCchhHHHHHHHHHh
Q psy8318          14 LLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        14 lllG~~~sGKst~~kq~r~~~   34 (313)
                      +++|..||||||++.-+..+.
T Consensus        29 ~i~G~NGsGKS~ileAi~~~l   49 (427)
T d1w1wa_          29 SIIGPNGSGKSNMMDAISFVL   49 (427)
T ss_dssp             EEECSTTSSHHHHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHHHHh
Confidence            688999999999999987654

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=87.56  E-value=0.14  Score=42.68  Aligned_cols=21  Identities=14%  Similarity=0.422  Sum_probs=19.1

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      -|++++|++|+|||||+.++-
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~   64 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIA   64 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHH
Confidence            489999999999999999873

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=87.53  E-value=0.2  Score=36.92  Aligned_cols=18  Identities=17%  Similarity=0.547  Sum_probs=14.5

Q ss_pred             EEEcCCCCchhH-HHHHHH
Q psy8318          14 LLLGAGESGKST-IVKQMK   31 (313)
Q Consensus        14 lllG~~~sGKst-~~kq~r   31 (313)
                      +++|+..||||| |+++.+
T Consensus         6 ~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHH
Confidence            568999999999 666654

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=87.34  E-value=0.16  Score=43.27  Aligned_cols=25  Identities=32%  Similarity=0.258  Sum_probs=21.5

Q ss_pred             ccceEEEEcCCCCchhHHHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMKII   33 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r~~   33 (313)
                      +-++|.+=|.-||||||+++.+.--
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4579999999999999999998643

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=87.24  E-value=0.17  Score=40.48  Aligned_cols=19  Identities=32%  Similarity=0.461  Sum_probs=16.3

Q ss_pred             EEEEcCCCCchhHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r   31 (313)
                      |-+-|..||||||+.+.|.
T Consensus         4 IgiTG~igSGKsTva~~l~   22 (241)
T d1deka_           4 IFLSGVKRSGKDTTADFIM   22 (241)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4567999999999999974

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=86.81  E-value=0.17  Score=38.61  Aligned_cols=20  Identities=30%  Similarity=0.459  Sum_probs=16.9

Q ss_pred             ceEEEEcCCCCchhHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~   30 (313)
                      .-||+.|.+|+||||+.-.+
T Consensus        16 ~gvli~G~sg~GKS~la~~l   35 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALEL   35 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHH
Confidence            35899999999999998553

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=86.65  E-value=0.16  Score=44.44  Aligned_cols=18  Identities=39%  Similarity=0.453  Sum_probs=16.9

Q ss_pred             EEEEcCCCCchhHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        13 illlG~~~sGKst~~kq~   30 (313)
                      ||+-|+.||||||.+.-|
T Consensus       161 iLvtGpTGSGKSTTl~~~  178 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAG  178 (401)
T ss_dssp             EEEECSTTSCHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHH
Confidence            899999999999999876

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=86.25  E-value=0.18  Score=42.86  Aligned_cols=24  Identities=25%  Similarity=0.281  Sum_probs=21.1

Q ss_pred             ccceEEEEcCCCCchhHHHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQMKI   32 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~r~   32 (313)
                      +-++|.+=|.-||||||+++.+.-
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999864

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.83  E-value=0.2  Score=39.36  Aligned_cols=19  Identities=16%  Similarity=0.333  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy8318          12 KLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        12 killlG~~~sGKst~~kq~   30 (313)
                      -+|+.|++|+||||+++.+
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~   44 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYAL   44 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHH
Confidence            4899999999999999976

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=85.73  E-value=0.16  Score=44.19  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=19.0

Q ss_pred             ccceEEEEcCCCCchhHHHHHH
Q psy8318           9 REVKLLLLGAGESGKSTIVKQM   30 (313)
Q Consensus         9 ~~~killlG~~~sGKst~~kq~   30 (313)
                      ..-.+||+|.+|+|||++++.+
T Consensus        42 ~k~n~llvG~~GvGKtaiv~~l   63 (387)
T d1qvra2          42 TKNNPVLIGEPGVGKTAIVEGL   63 (387)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHH
T ss_pred             CCCCCeEECCCCCCHHHHHHHH
Confidence            4456899999999999999866

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=85.67  E-value=0.19  Score=43.23  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCchhHHHHHHHHHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r~~~   34 (313)
                      -+|+.|++|+|||+|++-+--..
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~~~  178 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLELC  178 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHc
Confidence            58999999999999999874333

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.45  E-value=0.21  Score=40.03  Aligned_cols=18  Identities=28%  Similarity=0.540  Sum_probs=16.5

Q ss_pred             EEEEcCCCCchhHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        13 illlG~~~sGKst~~kq~   30 (313)
                      +|+-|++|+||||+++.+
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~   54 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLL   54 (239)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            788999999999999875

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=84.80  E-value=0.24  Score=39.18  Aligned_cols=18  Identities=17%  Similarity=0.536  Sum_probs=16.6

Q ss_pred             EEEEcCCCCchhHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        13 illlG~~~sGKst~~kq~   30 (313)
                      +++.|++|||||.|+.-+
T Consensus        39 l~l~G~~G~GKTHLl~A~   56 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAA   56 (213)
T ss_dssp             EEEECSSSSSHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            789999999999999876

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.91  E-value=0.36  Score=34.49  Aligned_cols=26  Identities=4%  Similarity=0.054  Sum_probs=22.6

Q ss_pred             hhhccceEEEEcCCCCchhHHHHHHH
Q psy8318           6 WQEREVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus         6 ~~~~~~killlG~~~sGKst~~kq~r   31 (313)
                      |.++-+-|++-|.++|||||+.+-+.
T Consensus         2 r~kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           2 RPKQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GGGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             CCccceEEEEeCCCCCCHHHHHHHHH
Confidence            45678899999999999999999763

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.09  E-value=0.31  Score=37.45  Aligned_cols=18  Identities=33%  Similarity=0.575  Sum_probs=16.8

Q ss_pred             EEEEcCCCCchhHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        13 illlG~~~sGKst~~kq~   30 (313)
                      +|++|+..||||.+..++
T Consensus         2 iLVtGGarSGKS~~AE~l   19 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEAL   19 (180)
T ss_dssp             EEEEECTTSSHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHH
Confidence            689999999999999985

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=82.79  E-value=0.46  Score=36.71  Aligned_cols=26  Identities=19%  Similarity=0.413  Sum_probs=19.6

Q ss_pred             eEEEEcCC-CCchhHHHHHH-HHHhcCC
Q psy8318          12 KLLLLGAG-ESGKSTIVKQM-KIIHETG   37 (313)
Q Consensus        12 killlG~~-~sGKst~~kq~-r~~~~~~   37 (313)
                      |+.+-|++ |+||||+.=.+ +.+...|
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~G   30 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAAG   30 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHCC
Confidence            78899998 99999998766 3344443

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=82.59  E-value=0.3  Score=41.40  Aligned_cols=22  Identities=18%  Similarity=0.302  Sum_probs=19.3

Q ss_pred             cceEEEEcCCCCchhHHHHHHH
Q psy8318          10 EVKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        10 ~~killlG~~~sGKst~~kq~r   31 (313)
                      -++|.+=|.-||||||+++-+.
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La   25 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLV   25 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHT
T ss_pred             ceEEEEECCcCCCHHHHHHHHH
Confidence            3578999999999999999874

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=82.52  E-value=0.39  Score=39.35  Aligned_cols=27  Identities=19%  Similarity=0.388  Sum_probs=21.9

Q ss_pred             hccceEEEEcCCCCchhHHHHHHHHHh
Q psy8318           8 EREVKLLLLGAGESGKSTIVKQMKIIH   34 (313)
Q Consensus         8 ~~~~killlG~~~sGKst~~kq~r~~~   34 (313)
                      ..+--+++.|++++|||+|+.-+..+.
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            345567899999999999999886554

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.52  E-value=0.34  Score=39.94  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=19.0

Q ss_pred             ceEEEEcCCCCchhHHHHHHH
Q psy8318          11 VKLLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        11 ~killlG~~~sGKst~~kq~r   31 (313)
                      -|++++|.+|+|||||+.++-
T Consensus        69 Qr~~If~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          69 GKIGLFGGAGVGKTVLIMELI   89 (276)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEeeCCCCCCHHHHHHHHH
Confidence            489999999999999999973

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=81.79  E-value=0.37  Score=39.42  Aligned_cols=19  Identities=32%  Similarity=0.475  Sum_probs=16.7

Q ss_pred             EEEEcCCCCchhHHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQMK   31 (313)
Q Consensus        13 illlG~~~sGKst~~kq~r   31 (313)
                      +.+.|.++||||||+-|+-
T Consensus        57 tei~G~~gsGKTtl~l~~~   75 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVI   75 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHH
Confidence            4689999999999998874

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=81.73  E-value=0.36  Score=40.73  Aligned_cols=18  Identities=33%  Similarity=0.774  Sum_probs=15.4

Q ss_pred             EEEEcCCCCchhHHHHHH
Q psy8318          13 LLLLGAGESGKSTIVKQM   30 (313)
Q Consensus        13 illlG~~~sGKst~~kq~   30 (313)
                      +|+.|++|+|||.+.+.+
T Consensus       126 ~l~~G~pG~GKT~la~al  143 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHAL  143 (321)
T ss_dssp             EEEECSSSSCHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHH
Confidence            344699999999999987

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=80.88  E-value=0.45  Score=38.66  Aligned_cols=23  Identities=35%  Similarity=0.640  Sum_probs=18.8

Q ss_pred             hccceEEEE-cCCCCchhHHHHHH
Q psy8318           8 EREVKLLLL-GAGESGKSTIVKQM   30 (313)
Q Consensus         8 ~~~~killl-G~~~sGKst~~kq~   30 (313)
                      +...||+++ |=||+||||+.=.+
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHH
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHH
Confidence            456677777 99999999997776

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=80.70  E-value=0.37  Score=40.50  Aligned_cols=23  Identities=26%  Similarity=0.550  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCchhHHHHHHH-HHh
Q psy8318          12 KLLLLGAGESGKSTIVKQMK-IIH   34 (313)
Q Consensus        12 killlG~~~sGKst~~kq~r-~~~   34 (313)
                      -+|++|++|+|||.+.+.+- .++
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~   78 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLF   78 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHhc
Confidence            46788999999999999984 344