Psyllid ID: psy8319

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Protein Sequence
MGRLKKQGKTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGFYDTQADNLTWFDRERWIGGKVPQDRTQIRKVLRTISVPLVICMWTVATVGILFAVGLIIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKKVEPWKLYTMVTGLLSIDLVILLCWQFYDPLQRITENFPLETPPKSSADDIKISPELEHCESRNNNIWYGFFNRHLQVLGVKIPEI
Secondary Structure (PSIPRED)
cHHHHHccccccccccccHHHHHHHHHHHHccEEEEEEEEEEEcccccEEEEEEEEEEEcccEEEEEEEEcccccEEEcccEEEEcccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHEEEcccEEEEEcccccccHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEEccccccccHHHHHHHHHHccccEEEEEccccccEEHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHEEEEEEccccEEEEccccccccccccccEEEEcEEEEEcccccHHHHHHHHHHHHEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccHHHHccccccccccccHHHHHHHHHHHHcccEEEccEEEEEccccccEEEEEEEEEccccEEEEEEEEcccccEEEccccEEcccccccccEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccHHEEEEHHHHHHHHHcccccccccHEEEccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccEEEEEEccccccEccHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHEcccccc
Coil and Loop (DISEMBL)
mgrlkkqgktlksFTYTNKEIADDIYAAINstqftgvsgdvafssqgdrIALTQIEQVINGSytklgfydtqadnltwfdrerwiggkvpqdrTQIRKVLRTISVPLVICMWTVATVGILFAVGLIIFNICYRhrrviasshpvcNTIMLVGIAFCMSlnfnlpfacePAAKLALEDVnnatdllpgfklqlhwndsecepglgaSVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKKVEPWKLYTMVTGLLSIDLVILLCWQFydplqritenfpletppkssaddikispelehcesrnnniWYGFFNRHLQVLGVKIPEI
Flexible Loop (DISEMBL)
mgrlkkqgktlkSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGFYDTQADNLTWFDRERWiggkvpqdrtqirKVLRTISVPLVICMWTVATVGILFAVGLIIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKKVEPWKLYTMVTGLLSIDLVILLCWQFYDPLQRITEnfpletppkssADDIKISPELEHCESRNNNIWYGFFNRHLQVLGVKIPEI
Low Complexity Region (SEG)
MGRLKKQGKTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGFYDTQADNLTWFDRERWIGGKVPQDRTQIRKVLRTISVPLVICMWTVATVGILFAVGLIIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKKVEPWKLYTMVTGLLSIDLVILLCWQFYDPLQRITENFPLETPPKSSADDIKISPELEHCESRNNNIWYGFFNRHLQVLGVKIPEI
Disordered region (IsUnstruct)
************SFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGFYDTQADNLTWFDRERWIGGKVPQDRTQIRKVLRTISVPLVICMWTVATVGILFAVGLIIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKKVEPWKLYTMVTGLLSIDLVILLCWQFYDPLQRITENF*********************CESRNNNIWYGFFNRHLQVLGVKI***
Disordered Region (DISOPRED)
*******GKTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGFYDTQADNLTWFDRERWIGGKVPQDRTQIRKVLRTISVPLVICMWTVATVGILFAVGLIIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKKVEPWKLYTMVTGLLSIDLVILLCWQFYDPLQRITENFPLETPPKSSADDIKISPELEHCESRNNNIWYGFFNRHLQVLGVKIP**
Disordered Region (DISEMBL)
********KTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGFYDTQADNLTWFDRERWIGGKVPQDRTQIRKVLRTISVPLVICMWTVATVGILFAVGLIIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKKVEPWKLYTMVTGLLSIDLVILLCWQFYDPLQRITENFPLETPPKSSADDIKISPELEHCESRNNNIWYGFFNRHLQVLGVKIPEI
Disordered Region (DISPRO)
*G****QGKTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGFYDTQADNLTWFDRERWIGGKVPQDRTQIRKVLRTISVPLVICMWTVATVGILFAVGLIIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKKVEPWKLYTMVTGLLSIDLVILLCWQFYDPLQRITENFPLETPPKSSADDIKISPELEHCESRNNNIWYGFFNRHLQVLGVKIP**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRLKKQGKTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGFYDTQADNLTWFDRERWIGGKVPQDRTQIRKVLRTISVPLVICMWTVATVGILFAVGLIIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKKVEPWKLYTMVTGLLSIDLVILLCWQFYDPLQRITENFPLETPPKSSADDIKISPELEHCESRNNNIWYGFFNRHLQVLGVKIPEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
FB|FBgn0260446	840	GABA-B-R1 "metabotropic GABA-B	0.475	0.186	0.681	6.6e-82
UNIPROTKB|B0UXY8	899	GABBR1 "Gamma-aminobutyric aci	0.478	0.175	0.411	4.7e-45
UNIPROTKB|F1P6E5	929	GABBR1 "Uncharacterized protei	0.478	0.170	0.411	5.3e-45
UNIPROTKB|Q9UBS5	961	GABBR1 "Gamma-aminobutyric aci	0.478	0.164	0.411	6e-45
UNIPROTKB|K7GNS7	898	LOC100738146 "Uncharacterized	0.478	0.175	0.411	9.6e-45
MGI|MGI:1860139	960	Gabbr1 "gamma-aminobutyric aci	0.478	0.164	0.411	9.7e-45
UNIPROTKB|K7GP86	960	LOC100738146 "Uncharacterized	0.478	0.164	0.411	1.2e-44
UNIPROTKB|F1MF15	961	GABBR1 "Uncharacterized protei	0.478	0.164	0.411	1.2e-44
RGD|621537	991	Gabbr1 "gamma-aminobutyric aci	0.478	0.159	0.411	7.5e-44
UNIPROTKB|Q9Z0U4	991	Gabbr1 "Gamma-aminobutyric aci	0.478	0.159	0.411	7.5e-44

FB|FBgn0260446 GABA-B-R1 "metabotropic GABA-B receptor subtype 1" [Drosophila melanogaster (taxid:7227)]

 Score = 565 (203.9 bits), Expect = 6.6e-82, Sum P(2) = 6.6e-82
 Identities = 107/157 (68%), Positives = 128/157 (81%)

Query:     1 MGRLKKQGKTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVIN 60
             M RL    K+L+ FTYT+KEIAD+IYAA+NSTQF GVSG VAFSSQGDRIALTQIEQ+I+
Sbjct:   362 MERLTTGKKSLRDFTYTDKEIADEIYAAMNSTQFLGVSGVVAFSSQGDRIALTQIEQMID 421

Query:    61 GSYTKLGFYDTQADNLTWFDRERWIGGKVPQDRTQIRKVLRTISVPLVICMWTVATVGIL 120
             G Y KLG+YDTQ DNL+W + E+WIGGKVPQDRT +  VLRT+S+PL +CM T+++ GI 
Sbjct:   422 GKYEKLGYYDTQLDNLSWLNTEQWIGGKVPQDRTIVTHVLRTVSLPLFVCMCTISSCGIF 481

Query:   121 FAVGLIIFNICYRHRRVIASSHPVCNTIMLVGIAFCM 157
              A  LIIFNI  +HRRVI SSHPVCNTIML G+  C+
Sbjct:   482 VAFALIIFNIWNKHRRVIQSSHPVCNTIMLFGVIICL 518

GO:0004965 "G-protein coupled GABA receptor activity" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

UNIPROTKB|B0UXY8 GABBR1 "Gamma-aminobutyric acid type B receptor subunit 1" [Homo sapiens (taxid:9606)]

 Score = 325 (119.5 bits), Expect = 4.7e-45, Sum P(2) = 4.7e-45
 Identities = 65/158 (41%), Positives = 95/158 (60%)

Query:     6 KQGKTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTK 65
             + G  L+ F Y N+ I D IY A+NS+ F GVSG V F + G R+A T IEQ+  GSY K
Sbjct:   428 RSGVRLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDASGSRMAWTLIEQLQGGSYKK 487

Query:    66 LGFYDTQADNLTWFDRERWIGGKVPQDRTQIRKVLRTISVPLVICMWTVATVGILFAVGL 125
             +G+YD+  D+L+W   ++WIGG  P D+T + K  R +S  L I +  ++++GI+ AV  
Sbjct:   488 IGYYDSTKDDLSWSKTDKWIGGSPPADQTLVIKTFRFLSQKLFISVSVLSSLGIVLAVVC 547

Query:   126 IIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLNFNL 163
             + FNI   H R I +S P  N +  VG +  ++  F L
Sbjct:   548 LSFNIYNSHVRYIQNSQPNLNNLTAVGCSLALAAVFPL 585

GO:0004965 "G-protein coupled GABA receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1P6E5 GABBR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 323 (118.8 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
 Identities = 65/158 (41%), Positives = 95/158 (60%)

Query:     6 KQGKTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTK 65
             + G  L+ F Y N+ I D IY A+NS+ F GVSG V F + G R+A T IEQ+  GSY K
Sbjct:   458 RSGVRLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDASGSRMAWTLIEQLQGGSYKK 517

Query:    66 LGFYDTQADNLTWFDRERWIGGKVPQDRTQIRKVLRTISVPLVICMWTVATVGILFAVGL 125
             +G+YD+  D+L+W   ++WIGG  P D+T + K  R +S  L I +  ++++GI+ AV  
Sbjct:   518 IGYYDSTKDDLSWSKTDKWIGGAPPADQTLVIKTFRFMSQKLFISVSVLSSLGIVLAVVC 577

Query:   126 IIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLNFNL 163
             + FNI   H R I +S P  N +  VG +  ++  F L
Sbjct:   578 LSFNIYNSHVRYIQNSQPNLNNLTAVGCSLALAAVFPL 615

GO:0016021 "integral to membrane" evidence=IEA

GO:0004965 "G-protein coupled GABA receptor activity" evidence=IEA

UNIPROTKB|Q9UBS5 GABBR1 "Gamma-aminobutyric acid type B receptor subunit 1" [Homo sapiens (taxid:9606)]

 Score = 325 (119.5 bits), Expect = 6.0e-45, Sum P(2) = 6.0e-45
 Identities = 65/158 (41%), Positives = 95/158 (60%)

Query:     6 KQGKTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTK 65
             + G  L+ F Y N+ I D IY A+NS+ F GVSG V F + G R+A T IEQ+  GSY K
Sbjct:   490 RSGVRLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDASGSRMAWTLIEQLQGGSYKK 549

Query:    66 LGFYDTQADNLTWFDRERWIGGKVPQDRTQIRKVLRTISVPLVICMWTVATVGILFAVGL 125
             +G+YD+  D+L+W   ++WIGG  P D+T + K  R +S  L I +  ++++GI+ AV  
Sbjct:   550 IGYYDSTKDDLSWSKTDKWIGGSPPADQTLVIKTFRFLSQKLFISVSVLSSLGIVLAVVC 609

Query:   126 IIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLNFNL 163
             + FNI   H R I +S P  N +  VG +  ++  F L
Sbjct:   610 LSFNIYNSHVRYIQNSQPNLNNLTAVGCSLALAAVFPL 647

GO:0004965 "G-protein coupled GABA receptor activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=IEA

GO:0038037 "G-protein coupled receptor dimeric complex" evidence=IEA

GO:0042734 "presynaptic membrane" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007194 "negative regulation of adenylate cyclase activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|K7GNS7 LOC100738146 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 325 (119.5 bits), Expect = 9.6e-45, Sum P(2) = 9.6e-45
 Identities = 65/158 (41%), Positives = 95/158 (60%)

Query:     6 KQGKTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTK 65
             + G  L+ F Y N+ I D IY A+NS+ F GVSG V F + G R+A T IEQ+  GSY K
Sbjct:   427 RSGVRLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDASGSRMAWTLIEQLQGGSYKK 486

Query:    66 LGFYDTQADNLTWFDRERWIGGKVPQDRTQIRKVLRTISVPLVICMWTVATVGILFAVGL 125
             +G+YD+  D+L+W   ++WIGG  P D+T + K  R +S  L I +  ++++GI+ AV  
Sbjct:   487 IGYYDSTKDDLSWSKTDKWIGGSPPADQTLVIKTFRFLSQKLFISVSVLSSLGIVLAVVC 546

Query:   126 IIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLNFNL 163
             + FNI   H R I +S P  N +  VG +  ++  F L
Sbjct:   547 LSFNIYNSHVRYIQNSQPNLNNLTAVGCSLALAAVFPL 584

GO:0016021 "integral to membrane" evidence=IEA

GO:0004965 "G-protein coupled GABA receptor activity" evidence=IEA

MGI|MGI:1860139 Gabbr1 "gamma-aminobutyric acid (GABA) B receptor, 1" [Mus musculus (taxid:10090)]

 Score = 325 (119.5 bits), Expect = 9.7e-45, Sum P(2) = 9.7e-45
 Identities = 65/158 (41%), Positives = 95/158 (60%)

Query:     6 KQGKTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTK 65
             + G  L+ F Y N+ I D IY A+NS+ F GVSG V F + G R+A T IEQ+  GSY K
Sbjct:   489 RSGVRLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDASGSRMAWTLIEQLQGGSYKK 548

Query:    66 LGFYDTQADNLTWFDRERWIGGKVPQDRTQIRKVLRTISVPLVICMWTVATVGILFAVGL 125
             +G+YD+  D+L+W   ++WIGG  P D+T + K  R +S  L I +  ++++GI+ AV  
Sbjct:   549 IGYYDSTKDDLSWSKTDKWIGGSPPADQTLVIKTFRFLSQKLFISVSVLSSLGIVLAVVC 608

Query:   126 IIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLNFNL 163
             + FNI   H R I +S P  N +  VG +  ++  F L
Sbjct:   609 LSFNIYNSHVRYIQNSQPNLNNLTAVGCSLALAAVFPL 646

GO:0001649 "osteoblast differentiation" evidence=ISO

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0004965 "G-protein coupled GABA receptor activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005615 "extracellular space" evidence=ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007194 "negative regulation of adenylate cyclase activity" evidence=ISO

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=IDA

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0014048 "regulation of glutamate secretion" evidence=ISO

GO:0014049 "positive regulation of glutamate secretion" evidence=ISO

GO:0014053 "negative regulation of gamma-aminobutyric acid secretion" evidence=ISO

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030673 "axolemma" evidence=ISO

GO:0030817 "regulation of cAMP biosynthetic process" evidence=ISO

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0032811 "negative regulation of epinephrine secretion" evidence=ISO

GO:0033602 "negative regulation of dopamine secretion" evidence=ISO

GO:0038037 "G-protein coupled receptor dimeric complex" evidence=IDA

GO:0042734 "presynaptic membrane" evidence=IDA

GO:0043005 "neuron projection" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043197 "dendritic spine" evidence=ISO

GO:0043198 "dendritic shaft" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0045121 "membrane raft" evidence=ISO

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IDA

GO:0050805 "negative regulation of synaptic transmission" evidence=ISO

GO:0060124 "positive regulation of growth hormone secretion" evidence=ISO

UNIPROTKB|K7GP86 LOC100738146 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 325 (119.5 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
 Identities = 65/158 (41%), Positives = 95/158 (60%)

Query:     6 KQGKTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTK 65
             + G  L+ F Y N+ I D IY A+NS+ F GVSG V F + G R+A T IEQ+  GSY K
Sbjct:   489 RSGVRLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDASGSRMAWTLIEQLQGGSYKK 548

Query:    66 LGFYDTQADNLTWFDRERWIGGKVPQDRTQIRKVLRTISVPLVICMWTVATVGILFAVGL 125
             +G+YD+  D+L+W   ++WIGG  P D+T + K  R +S  L I +  ++++GI+ AV  
Sbjct:   549 IGYYDSTKDDLSWSKTDKWIGGSPPADQTLVIKTFRFLSQKLFISVSVLSSLGIVLAVVC 608

Query:   126 IIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLNFNL 163
             + FNI   H R I +S P  N +  VG +  ++  F L
Sbjct:   609 LSFNIYNSHVRYIQNSQPNLNNLTAVGCSLALAAVFPL 646

GO:0016021 "integral to membrane" evidence=IEA

GO:0004965 "G-protein coupled GABA receptor activity" evidence=IEA

UNIPROTKB|F1MF15 GABBR1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 325 (119.5 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
 Identities = 65/158 (41%), Positives = 95/158 (60%)

Query:     6 KQGKTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTK 65
             + G  L+ F Y N+ I D IY A+NS+ F GVSG V F + G R+A T IEQ+  GSY K
Sbjct:   490 RSGVRLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDASGSRMAWTLIEQLQGGSYKK 549

Query:    66 LGFYDTQADNLTWFDRERWIGGKVPQDRTQIRKVLRTISVPLVICMWTVATVGILFAVGL 125
             +G+YD+  D+L+W   ++WIGG  P D+T + K  R +S  L I +  ++++GI+ AV  
Sbjct:   550 IGYYDSTKDDLSWSKTDKWIGGSPPADQTLVIKTFRFLSQKLFISVSVLSSLGIVLAVVC 609

Query:   126 IIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLNFNL 163
             + FNI   H R I +S P  N +  VG +  ++  F L
Sbjct:   610 LSFNIYNSHVRYIQNSQPNLNNLTAVGCSLALAAVFPL 647

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0042734 "presynaptic membrane" evidence=IEA

GO:0038037 "G-protein coupled receptor dimeric complex" evidence=IEA

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004965 "G-protein coupled GABA receptor activity" evidence=IEA

RGD|621537 Gabbr1 "gamma-aminobutyric acid (GABA) B receptor 1" [Rattus norvegicus (taxid:10116)]

 Score = 325 (119.5 bits), Expect = 7.5e-44, Sum P(2) = 7.5e-44
 Identities = 65/158 (41%), Positives = 95/158 (60%)

Query:     6 KQGKTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTK 65
             + G  L+ F Y N+ I D IY A+NS+ F GVSG V F + G R+A T IEQ+  GSY K
Sbjct:   489 RSGVRLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDASGSRMAWTLIEQLQGGSYKK 548

Query:    66 LGFYDTQADNLTWFDRERWIGGKVPQDRTQIRKVLRTISVPLVICMWTVATVGILFAVGL 125
             +G+YD+  D+L+W   ++WIGG  P D+T + K  R +S  L I +  ++++GI+ AV  
Sbjct:   549 IGYYDSTKDDLSWSKTDKWIGGSPPADQTLVIKTFRFLSQKLFISVSVLSSLGIVLAVVC 608

Query:   126 IIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLNFNL 163
             + FNI   H R I +S P  N +  VG +  ++  F L
Sbjct:   609 LSFNIYNSHVRYIQNSQPNLNNLTAVGCSLALAAVFPL 646

GO:0001649 "osteoblast differentiation" evidence=IMP

GO:0004965 "G-protein coupled GABA receptor activity" evidence=IEA;IDA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005615 "extracellular space" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0007194 "negative regulation of adenylate cyclase activity" evidence=IDA;IMP

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=IEA;ISO

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0014048 "regulation of glutamate secretion" evidence=IDA

GO:0014049 "positive regulation of glutamate secretion" evidence=IMP

GO:0014053 "negative regulation of gamma-aminobutyric acid secretion" evidence=IMP

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030673 "axolemma" evidence=IDA

GO:0030817 "regulation of cAMP biosynthetic process" evidence=IDA

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0032811 "negative regulation of epinephrine secretion" evidence=IMP

GO:0033602 "negative regulation of dopamine secretion" evidence=IDA

GO:0035094 "response to nicotine" evidence=IEP

GO:0038037 "G-protein coupled receptor dimeric complex" evidence=IEA;ISO

GO:0042734 "presynaptic membrane" evidence=IEA;ISO

GO:0043005 "neuron projection" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043197 "dendritic spine" evidence=IDA

GO:0043198 "dendritic shaft" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0045121 "membrane raft" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=IEA;ISO

GO:0045471 "response to ethanol" evidence=IEP

GO:0050805 "negative regulation of synaptic transmission" evidence=IDA

GO:0060124 "positive regulation of growth hormone secretion" evidence=IMP

UNIPROTKB|Q9Z0U4 Gabbr1 "Gamma-aminobutyric acid type B receptor subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 325 (119.5 bits), Expect = 7.5e-44, Sum P(2) = 7.5e-44
 Identities = 65/158 (41%), Positives = 95/158 (60%)

Query:     6 KQGKTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTK 65
             + G  L+ F Y N+ I D IY A+NS+ F GVSG V F + G R+A T IEQ+  GSY K
Sbjct:   489 RSGVRLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDASGSRMAWTLIEQLQGGSYKK 548

Query:    66 LGFYDTQADNLTWFDRERWIGGKVPQDRTQIRKVLRTISVPLVICMWTVATVGILFAVGL 125
             +G+YD+  D+L+W   ++WIGG  P D+T + K  R +S  L I +  ++++GI+ AV  
Sbjct:   549 IGYYDSTKDDLSWSKTDKWIGGSPPADQTLVIKTFRFLSQKLFISVSVLSSLGIVLAVVC 608

Query:   126 IIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLNFNL 163
             + FNI   H R I +S P  N +  VG +  ++  F L
Sbjct:   609 LSFNIYNSHVRYIQNSQPNLNNLTAVGCSLALAAVFPL 646

GO:0016021 "integral to membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	330
cd06366	350	cd06366, PBP1_GABAb_receptor, Ligand-binding domai	5e-25
pfam01094	343	pfam01094, ANF_receptor, Receptor family ligand bi	3e-10
cd06352	389	cd06352, PBP1_NPR_GC_like, Ligand-binding domain o	4e-09
cd06350	348	cd06350, PBP1_GPCR_family_C_like, Ligand-binding d	2e-08
cd06366	350	cd06366, PBP1_GABAb_receptor, Ligand-binding domai	7e-07
cd06373	396	cd06373, PBP1_NPR_like, Ligand binding domain of n	6e-06
cd06269	298	cd06269, PBP1_glutamate_receptors_like, Family C G	1e-05
cd06370	404	cd06370, PBP1_Speract_GC_like, Ligand-binding doma	2e-05
cd04509	299	cd04509, PBP1_ABC_transporter_GCPR_C_like, Family	1e-04
cd06268	298	cd06268, PBP1_ABC_transporter_LIVBP_like, Periplas	8e-04
cd06386	387	cd06386, PBP1_NPR_C_like, Ligand-binding domain of	0.004

>gnl|CDD|107361 cd06366, PBP1_GABAb_receptor, Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA)

 Score =  102 bits (257), Expect = 5e-25
 Identities = 35/78 (44%), Positives = 47/78 (60%)

Query: 166 ACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGC 225
           A  PA ++ALEDVN    +LPG++L LH  DS+C+P   AS   +LL N P   ++   C
Sbjct: 16  AALPAIEMALEDVNADNSILPGYRLVLHVRDSKCDPVQAASAALDLLENKPVVAIIGPQC 75

Query: 226 STVCTTVAEAAKMWNLVV 243
           S+V   VAE A  WN+ V
Sbjct: 76  SSVAEFVAEVANEWNVPV 93

Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example. Length = 350

>gnl|CDD|216296 pfam01094, ANF_receptor, Receptor family ligand binding region

 Score = 60.2 bits (146), Expect = 3e-10
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 166 ACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGC 225
               A +LA+ED+N    LLPG  L    +D+  +    A+    L        ++   C
Sbjct: 1   QVLLAMRLAIEDINADGGLLPGITLGYEDDDTCDDSFAVAAAACLLKSKGV-VAVIGPSC 59

Query: 226 STVCTTVAEAAKMWNLVV 243
           S+V   VA  A  + + +
Sbjct: 60  SSVAIAVARLAGAFGIPM 77

This family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Length = 343

>gnl|CDD|107347 cd06352, PBP1_NPR_GC_like, Ligand-binding domain of membrane guanylyl-cyclase receptors

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 153 IAFCMSLNFNLPFA---CEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMY 209
           +   +  N + PF+     PA +LA+E VN   +LLPG+     + D+EC   +      
Sbjct: 2   VGVLLPWNTDYPFSLARVGPAIQLAVERVNADPNLLPGYDFTFVYLDTECSESVALLAAV 61

Query: 210 NLLYNNPQKLMLLAG--CSTVCTTVAEAAKMWNL 241
           +L +     +    G  C   C  VA  A  WN+
Sbjct: 62  DLYWE--HNVDAFIGPGCPYACAPVARLAAHWNI 93

Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family. Length = 389

>gnl|CDD|153138 cd06350, PBP1_GPCR_family_C_like, Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs)

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 16/95 (16%)

Query: 165 FACEPAAKLALEDV---NNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNN------ 215
                AA+  L  V   NN  DLLP   L  H  DS C P +      +LL +       
Sbjct: 24  KKGLQAAEAMLFAVEEINNDPDLLPNITLGYHIYDSCCSPAVALRAALDLLLSGEGTTPP 83

Query: 216 ------PQKLMLL-AGCSTVCTTVAEAAKMWNLVV 243
                 P+ + ++  G S+V   VAE   ++ +  
Sbjct: 84  YSCRKQPKVVAVIGPGSSSVSMAVAELLGLFKIPQ 118

Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extracellular region is further devided into the ligand-binding domain (LBD) and the cysteine-rich domain. The LBD has sequence similarity to the LIVBP, which is a bacterial periplasmic protein (PBP), as well as to the extracellular region of both iGluR and the gamma-aminobutyric acid (GABA)b receptor. iGluRs are divided into three main subtypes based on pharmacological profile: NMDA, AMPA, and kainate receptors. All family C GPCRs have a large extracellular N terminus that contain a domain with homology to bacterial periplasmic amino acid-binding proteins. Length = 348

>gnl|CDD|107361 cd06366, PBP1_GABAb_receptor, Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA)

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 7/59 (11%)

Query: 23  DDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQV--INGSYTKLGFYDTQADNLTWF 79
           D ++A   ST F G+SG V F   G R+A    E +  I   Y K+GF+ +    L+ F
Sbjct: 296 DAVWA---STNFNGLSGPVQFDG-GRRLASPAFEIINIIGKGYRKIGFW-SSESGLSVF 349

Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example. Length = 350

>gnl|CDD|107368 cd06373, PBP1_NPR_like, Ligand binding domain of natriuretic peptide receptor (NPR) family

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 160 NFNLPFA---CEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPG----LGASVMYNLL 212
           N + P++     PA  +A+E VN    LLPG  + L + DSEC+ G        V  +L 
Sbjct: 10  NTSYPWSLPRVGPAIDIAVERVNADPGLLPGHNITLVFEDSECKCGCSESEAPLVAVDLY 69

Query: 213 YNNPQKLMLLAGCSTVCTTVAEAAKMWNL 241
           + +     L  GC      VA  A  WN+
Sbjct: 70  FQHKPDAFLGPGCEYAAAPVARFAAHWNV 98

Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase. Length = 396

>gnl|CDD|153137 cd06269, PBP1_glutamate_receptors_like, Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 4/97 (4%)

Query: 151 VGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGAS---- 206
           +G  F +             A  AL  V    + LP   L     DS C P    S    
Sbjct: 2   IGGLFPLHSGGRFGEEGAFRAAAALFAVEEINNDLPNTTLGYEIYDSCCSPSDAFSAALD 61

Query: 207 VMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVV 243
           +   L  +     ++    S+    VA      ++  
Sbjct: 62  LCSLLEKSRGVVAVIGPSSSSSAEAVASLLGALHIPQ 98

This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing variants of the orphan receptors are not included in this CD. The family C GPCRs are activated by endogenous agonists such as amino acids, ions, and sugar based molecules. Their amino terminal ligand-binding region is homologous to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). The ionotropic glutamate receptors (iGluRs) have an integral ion channel and are subdivided into three major groups based on their pharmacology and structural similarities: NMDA receptors, AMPA receptors, and kainate receptors. The family of membrane bound guanylyl cyclases is further divided into three subfamilies: the ANP receptor (GC-A)/C-type natriuretic peptide receptor (GC-B), the heat-stable enterotoxin receptor (GC-C)/sensory organ specific membrane GCs such as retinal receptors (GC-E, GC-F), and olfactory receptors (GC-D and GC-G). Length = 298

>gnl|CDD|107365 cd06370, PBP1_Speract_GC_like, Ligand-binding domain of membrane bound guanylyl cyclases

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 15/75 (20%)

Query: 173 LALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV---- 228
           LA+EDVN   +LLPG+KLQ  W D+  +  L    + +             G        
Sbjct: 27  LAVEDVNADPNLLPGYKLQFEWVDTHGDEVLSIRAVSD---------WWKRGVVAFIGPE 77

Query: 229 --CTTVAEAAKMWNL 241
             CTT A  A  WNL
Sbjct: 78  CTCTTEARLAAAWNL 92

Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model. Length = 404

>gnl|CDD|107261 cd04509, PBP1_ABC_transporter_GCPR_C_like, Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 151 VGIAFCMSLNF-NLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMY 209
           +G+ F +S  +          A+LA+E++N A   +PG KL+L   D + +P    +   
Sbjct: 2   IGVLFPLSGPYAEYGAFRLAGAQLAVEEIN-AKGGIPGRKLELVIYDDQSDPARALAAAR 60

Query: 210 NLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVV 243
            L        ++    S V   VA  A+   + +
Sbjct: 61  RLCQQEGVDALVGPVSSGVALAVAPVAEALKIPL 94

This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4- isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts through either mGluRs or iGluRs. mGluRs subunits possess seven transmembrane segments and a large N-terminal extracellular domain. ABC-type leucine-isoleucine-valine-binding protein (LIVBP) is a bacterial periplasmic binding protein that has homology with the amino-terminal domain of the glutamate-receptor ion channels (iGluRs). The extracellular regions of iGluRs are made of two PBP-like domains in tandem, a LIVBP-like domain that constitutes the N terminus - which is included in this CD - followed by a domain related to lysine-arginine-ornithine-binding protein (LAOBP) that belongs to the type II periplasmic binding fold protein superfamily. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group. Length = 299

>gnl|CDD|107263 cd06268, PBP1_ABC_transporter_LIVBP_like, Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 170 AAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229
            A+LA+E++N A  +L G K++L   D++ +P   A+     L ++    ++    S V 
Sbjct: 22  GAELAVEEINAAGGIL-GRKIELVVEDTQGDPEAAAAA-ARELVDDGVDAVIGPLSSGVA 79

Query: 230 TTVAEAAKMWNLVV 243
              A  A+   + +
Sbjct: 80  LAAAPVAEEAGVPL 93

Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group. Length = 298

>gnl|CDD|107381 cd06386, PBP1_NPR_C_like, Ligand-binding domain of type C natriuretic peptide receptor

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 169 PAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQK---LMLLAGC 225
           PA + A   +     L PGF+  +H+ DS+C    G   +++L+  +  +   L+L   C
Sbjct: 21  PAIEYAQRRLEANRLLFPGFRFNVHYEDSDC----GNEALFSLVDRSCARKPDLILGPVC 76

Query: 226 STVCTTVAEAAKMWNLVV 243
                 VA  A  WN+ +
Sbjct: 77  EYAAAPVARLASHWNIPM 94

Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANP>CNP>BNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation. Length = 387

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	330
KOG1055|consensus	865		100.0
KOG1056|consensus	878		99.95
KOG1055|consensus	865		99.65
PF00003	238	7tm_3: 7 transmembrane sweet-taste receptor of 3 G	99.55
cd06372	391	PBP1_GC_G_like Ligand-binding domain of membrane g	98.87
cd06379	377	PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/	98.87
cd06365	469	PBP1_Pheromone_receptor Ligand-binding domain of t	98.84
cd06385	405	PBP1_NPR_A Ligand-binding domain of type A natriur	98.83
cd06364	510	PBP1_CaSR Ligand-binding domain of the CaSR calciu	98.76
cd06386	387	PBP1_NPR_C_like Ligand-binding domain of type C na	98.76
cd06373	396	PBP1_NPR_like Ligand binding domain of natriuretic	98.73
cd06365	469	PBP1_Pheromone_receptor Ligand-binding domain of t	98.7
cd06374	472	PBP1_mGluR_groupI Ligand binding domain of the gro	98.7
cd06362	452	PBP1_mGluR Ligand binding domain of the metabotrop	98.67
cd06375	458	PBP1_mGluR_groupII Ligand binding domain of the gr	98.62
cd06367	362	PBP1_iGluR_NMDA N-terminal leucine/isoleucine/vali	98.62
cd06376	463	PBP1_mGluR_groupIII Ligand-binding domain of the g	98.61
cd06371	382	PBP1_sensory_GC_DEF_like Ligand-binding domain of	98.58
PF01094	348	ANF_receptor: Receptor family ligand binding regio	98.56
cd06376	463	PBP1_mGluR_groupIII Ligand-binding domain of the g	98.54
cd06370	404	PBP1_Speract_GC_like Ligand-binding domain of memb	98.52
cd06366	350	PBP1_GABAb_receptor Ligand-binding domain of GABAb	98.5
cd06350	348	PBP1_GPCR_family_C_like Ligand-binding domain of m	98.49
cd06361	403	PBP1_GPC6A_like Ligand-binding domain of the promi	98.49
cd06385	405	PBP1_NPR_A Ligand-binding domain of type A natriur	98.49
cd06374	472	PBP1_mGluR_groupI Ligand binding domain of the gro	98.47
cd06363	410	PBP1_Taste_receptor Ligand-binding domain of the T	98.43
cd06372	391	PBP1_GC_G_like Ligand-binding domain of membrane g	98.41
cd06352	389	PBP1_NPR_GC_like Ligand-binding domain of membrane	98.39
cd06384	399	PBP1_NPR_B Ligand-binding domain of type B natriur	98.36
cd06362	452	PBP1_mGluR Ligand binding domain of the metabotrop	98.36
cd06361	403	PBP1_GPC6A_like Ligand-binding domain of the promi	98.35
cd06364	510	PBP1_CaSR Ligand-binding domain of the CaSR calciu	98.2
cd06375	458	PBP1_mGluR_groupII Ligand binding domain of the gr	98.2
cd06384	399	PBP1_NPR_B Ligand-binding domain of type B natriur	98.17
cd06380	382	PBP1_iGluR_AMPA N-terminal leucine/isoleucine/vali	98.15
cd06390	364	PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucin	98.09
cd06389	370	PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucin	98.06
cd06382	327	PBP1_iGluR_Kainate N-terminal leucine/isoleucine/v	98.02
cd06369	380	PBP1_GC_C_enterotoxin_receptor Ligand-binding doma	97.99
cd06386	387	PBP1_NPR_C_like Ligand-binding domain of type C na	97.99
cd06373	396	PBP1_NPR_like Ligand binding domain of natriuretic	97.93
cd06363	410	PBP1_Taste_receptor Ligand-binding domain of the T	97.93
cd06388	371	PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucin	97.9
cd06391	400	PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/v	97.89
cd06391	400	PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/v	97.84
cd06346	312	PBP1_ABC_ligand_binding_like_11 Type I periplasmic	97.84
cd06387	372	PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucin	97.76
cd06380	382	PBP1_iGluR_AMPA N-terminal leucine/isoleucine/vali	97.76
cd06269	298	PBP1_glutamate_receptors_like Family C G-protein c	97.74
cd06392	400	PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/v	97.73
cd06370	404	PBP1_Speract_GC_like Ligand-binding domain of memb	97.71
cd06393	384	PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isol	97.66
cd06368	324	PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleu	97.58
cd06394	333	PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleu	97.57
cd06378	362	PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/	97.52
cd06338	345	PBP1_ABC_ligand_binding_like_5 Type I periplasmic	97.51
cd06393	384	PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isol	97.44
cd06352	389	PBP1_NPR_GC_like Ligand-binding domain of membrane	97.35
cd06342	334	PBP1_ABC_LIVBP_like Type I periplasmic ligand-bind	97.34
cd06392	400	PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/v	97.32
cd06367	362	PBP1_iGluR_NMDA N-terminal leucine/isoleucine/vali	97.3
cd04509	299	PBP1_ABC_transporter_GCPR_C_like Family C of G-pro	97.3
cd06345	344	PBP1_ABC_ligand_binding_like_10 Type I periplasmic	97.29
KOG4440|consensus	993		97.13
cd06383	368	PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine	97.06
cd06377	382	PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/	96.98
cd06381	363	PBP1_iGluR_delta_like N-terminal leucine/isoleucin	96.95
cd06371	382	PBP1_sensory_GC_DEF_like Ligand-binding domain of	96.93
cd06348	344	PBP1_ABC_ligand_binding_like_13 Type I periplasmic	96.92
cd06347	334	PBP1_ABC_ligand_binding_like_12 Type I periplasmic	96.92
cd06340	347	PBP1_ABC_ligand_binding_like_6 Type I periplasmic	96.83
cd06327	334	PBP1_SBP_like_1 Periplasmic solute-binding domain	96.75
cd06366	350	PBP1_GABAb_receptor Ligand-binding domain of GABAb	96.74
cd06344	332	PBP1_ABC_ligand_binding_like_9 Type I periplasmic	96.73
cd06330	346	PBP1_Arsenic_SBP_like Periplasmic solute-binding d	96.71
KOG1056|consensus	878		96.65
cd06349	340	PBP1_ABC_ligand_binding_like_14 Type I periplasmic	96.64
cd06336	347	PBP1_ABC_ligand_binding_like_3 Type I periplasmic	96.53
cd06351	328	PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleuc	96.39
cd06329	342	PBP1_SBP_like_3 Periplasmic solute-binding domain	96.36
cd06382	327	PBP1_iGluR_Kainate N-terminal leucine/isoleucine/v	96.11
cd06369	380	PBP1_GC_C_enterotoxin_receptor Ligand-binding doma	95.88
cd06333	312	PBP1_ABC-type_HAAT_like Type I periplasmic binding	95.7
cd06359	333	PBP1_Nba_like Type I periplasmic binding component	95.49
cd06326	336	PBP1_STKc_like Type I periplasmic binding domain o	95.08
cd06331	333	PBP1_AmiC_like Type I periplasmic components of am	94.98
cd06355	348	PBP1_FmdD_like Periplasmic component (FmdD) of an	94.93
cd06328	333	PBP1_SBP_like_2 Periplasmic solute-binding domain	94.9
PF01094	348	ANF_receptor: Receptor family ligand binding regio	94.85
cd06394	333	PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleu	94.69
cd06335	347	PBP1_ABC_ligand_binding_like_2 Type I periplasmic	94.66
cd06343	362	PBP1_ABC_ligand_binding_like_8 Type I periplasmic	94.65
cd06358	333	PBP1_NHase Type I periplasmic-binding protein of t	94.54
cd06334	351	PBP1_ABC_ligand_binding_like_1 Type I periplasmic	94.54
cd06379	377	PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/	94.5
cd06268	298	PBP1_ABC_transporter_LIVBP_like Periplasmic bindin	94.5
PRK15404	369	leucine ABC transporter subunit substrate-binding	94.21
KOG1054|consensus	897		94.12
COG0683	366	LivK ABC-type branched-chain amino acid transport	93.91
TIGR03669	374	urea_ABC_arch urea ABC transporter, substrate-bind	93.22
cd06360	336	PBP1_alkylbenzenes_like Type I periplasmic binding	93.09
cd06332	333	PBP1_aromatic_compounds_like Type I periplasmic bi	92.84
cd06350	348	PBP1_GPCR_family_C_like Ligand-binding domain of m	92.61
cd06339	336	PBP1_YraM_LppC_lipoprotein_like Periplasmic bindin	92.56
TIGR03407	359	urea_ABC_UrtA urea ABC transporter, urea binding p	92.48
cd06356	334	PBP1_Amide_Urea_BP_like Periplasmic component (Fmd	92.3
PRK15404	369	leucine ABC transporter subunit substrate-binding	92.02
cd06383	368	PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine	91.86
cd06357	360	PBP1_AmiC Periplasmic binding domain of amidase (A	88.15
cd06381	363	PBP1_iGluR_delta_like N-terminal leucine/isoleucin	87.92
cd06368	324	PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleu	87.87
TIGR03863	347	PQQ_ABC_bind ABC transporter, substrate binding pr	84.19
cd06337	357	PBP1_ABC_ligand_binding_like_4 Type I periplasmic	83.16
TIGR03407	359	urea_ABC_UrtA urea ABC transporter, urea binding p	83.09
cd06355	348	PBP1_FmdD_like Periplasmic component (FmdD) of an	83.06
PF13458	343	Peripla_BP_6: Periplasmic binding protein; PDB: 4E	82.96
cd06351	328	PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleuc	81.72
PF13458	343	Peripla_BP_6: Periplasmic binding protein; PDB: 4E	81.13

>KOG1055|consensus

Probab=100.00  E-value=4.2e-43  Score=351.32  Aligned_cols=284  Identities=41%  Similarity=0.733  Sum_probs=259.6

Q ss_pred             CccccccCCCCCceecCChHHHHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEeeCCcEEEEEEEECCCCceeecC
Q psy8319           1 MGRLKKQGKTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGFYDTQADNLTWFD   80 (330)
Q Consensus         1 ~~~l~~~~~~l~~f~y~~~~~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~~~~v~VG~y~~~~~~l~~~~   80 (330)
                      |++|....++|+||+|+|++++++++++|+++||.|+||.|.|++ |||.+...|.|||+|+++++|.||+..+.+.|.+
T Consensus       360 ~e~l~~~~~~l~~f~y~~k~i~d~i~eamn~tsF~GvsG~V~F~~-geR~a~t~ieQ~qdg~y~k~g~Yds~~D~ls~~n  438 (865)
T KOG1055|consen  360 MEGLGRSHVRLEDFNYNNKTIADQIYEAMNSTSFEGVSGHVVFSN-GERMALTLIEQFQDGKYKKIGYYDSTKDDLSWIN  438 (865)
T ss_pred             HhcCCccceeccccchhhhHHHHHHHHHhhcccccccccceEecc-hhhHHHHHHHHHhCCceEeecccccccchhhccc
Confidence            456777889999999999999999999999999999999999998 9999999999999999999999999888999988


Q ss_pred             ccccCCCCCCCCccceeEEeeeechhHHHHHHHHHHHHHHHHHHhhheeeeecceeeEecCCccchhhhhhhhhhhcccc
Q psy8319          81 RERWIGGKVPQDRTQIRKVLRTISVPLVICMWTVATVGILFAVGLIIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLN  160 (330)
Q Consensus        81 ~i~W~~~~~P~s~~~~~~~~~~~~~~~~i~~~~~a~~gi~~~~~~~~~~i~~r~~~~Ik~Ss~~l~~~iliG~ll~~~~~  160 (330)
                      +.+|.+|.||.|.+.+++....++...++...+++.+|+.++..++.+++++|+.+.||+|+|++++++..|+.+++.++
T Consensus       439 ~~~w~~g~ppkd~Tv~~~~~~~~S~~~~~~~~~~s~Lg~~~~~~~l~f~~~~~~q~~i~~s~P~~nni~~~G~~~~~~sv  518 (865)
T KOG1055|consen  439 TEKWIGGSPPKDSTLIIKTFRFVSQKLYISVSSLSSLGIILAVVFLSFNIKNRNQRYIKMSSPNLNNLIIVGCSLTLASV  518 (865)
T ss_pred             cceEeccCCCcccceeehcccccCcchhhhhhHHHHHHHHHHHHhchhhhhhhhhhhhccCCCCCCcceeeccceeeeee
Confidence            88999889999999998999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccc------------ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce
Q psy8319         161 FNL------------PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV  228 (330)
Q Consensus       161 ~~~------------~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~  228 (330)
                      +..            +..|..+.          |.+.+||                 ++.+++++.|+|++-.++.    
T Consensus       519 ~~lgLd~~~Isv~~f~~lc~~r~----------w~l~~gf-----------------t~~~Gamf~K~w~Vh~if~----  567 (865)
T KOG1055|consen  519 FLLGLDGYSISVNAFPFLCTART----------WILGLGF-----------------TLAFGAMFAKTWRVHSIFT----  567 (865)
T ss_pred             eeccCCcceecHHHHHHHHHHHH----------HHHhhee-----------------ecccchhhhhhheeeEeec----
Confidence            873            58899988          9999999                 9999999999999665541    


Q ss_pred             eeehhhhhhcccceeecccCceEEeeehhHHHHHHHHHhcceEeecceecccccccCCCCCCCCCCeEEeeccccccccC
Q psy8319         229 CTTVAEAAKMWNLVVKKVEPWKLYTMVTGLLSIDLVILLCWQFYDPLQRITENFPLETPPKSSADDIKISPELEHCESRN  308 (330)
Q Consensus       229 ~~~va~~~~~w~~~~~~~~~~~l~~~v~~~~~v~li~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~  308 (330)
                         .   -+.|   ++..+|..++.+|+++..+|+++++.|..+||+++++++|..+.+.  +++|+.+.|++++|.|++
T Consensus       568 ---~---~~~~---kK~~e~~Kl~~ivg~Ll~iD~~il~~WqivdPl~rt~ekl~~ep~~--~~~Dv~I~PelE~Ces~~  636 (865)
T KOG1055|consen  568 ---N---QKMW---KKVIEDSKLYVIVGLLLAIDVLILAIWQIVDPLHRTEEKLSKEPPK--NDRDVSIIPELEHCESEH  636 (865)
T ss_pred             ---c---cccc---ccccccceeEeehhHHHHhHHHHhhhhhccChhhhhhhhcCCCCCC--cccccccchhhhhhcccc
Confidence               1   1222   2457788899999999999999999999999999999999988765  477888999999999999


Q ss_pred             cchHHHHHHHH---Hhhhcccc
Q psy8319         309 NNIWYGFFNRH---LQVLGVKI  327 (330)
Q Consensus       309 ~~i~~~~~y~~---l~~~~~~~  327 (330)
                      +.+|++++|+|   |++||+++
T Consensus       637 ~~iwlgivya~KglllvfG~FL  658 (865)
T KOG1055|consen  637 MTIWLGIVYAYKGLLLLFGCFL  658 (865)
T ss_pred             cchhhhhhhhhhhHHHHHhHHh
Confidence            99999999998   78899875

>KOG1056|consensus

Probab=99.95  E-value=1.6e-28  Score=253.07  Aligned_cols=256  Identities=20%  Similarity=0.352  Sum_probs=209.3

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEee-CC---cEEEEEEEECCCCceeec-CccccCCC--CCCCCcc
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVI-NG---SYTKLGFYDTQADNLTWF-DRERWIGG--KVPQDRT   94 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q-~~---~~v~VG~y~~~~~~l~~~-~~i~W~~~--~~P~s~~   94 (330)
                      +++|++++.+|+|.|..|.|+||+|||.+++|+|.+|| .+   .+..||+|+...   .++ +++.|.++  .+|.|..
T Consensus       418 g~~L~~~l~~vnF~~~~~~v~Fd~~gD~~~~y~I~~~~~~~~~~~y~~vg~w~~~~---~l~i~~~~w~~~~~~v~~S~C  494 (878)
T KOG1056|consen  418 GSLLLKYLLNVNFTGPAGSVRFDENGDGPGRYDILNYQLTNGSYTYKEVGYWSEGL---SLNIEDLDWTTKPSGVPKSVC  494 (878)
T ss_pred             HHHHHhhhheeEEecCCCceeecCCCCCccceeEEEeeccCCCccceeeeeecccc---cccceeeeeccCCCCCccccc
Confidence            67899999999999999999999999999999999999 23   689999998533   244 56778764  4677610


Q ss_pred             ------------------------------------------------------ceeEEeeeechhHHHHHHHHHHHHHH
Q psy8319          95 ------------------------------------------------------QIRKVLRTISVPLVICMWTVATVGIL  120 (330)
Q Consensus        95 ------------------------------------------------------~~~~~~~~~~~~~~i~~~~~a~~gi~  120 (330)
                                                                            ..+.+++.|.+++.++.+++|++|++
T Consensus       495 S~pC~~g~~k~~~~~~~ccw~c~~c~~~eY~~d~~tc~~C~~~~wp~~~~tgc~~~~~~yl~W~~~~~i~~l~lA~LGii  574 (878)
T KOG1056|consen  495 SEPCLPGQRKKVTKGVTCCWHCTPCMSYEYVNDEFTCSDCQLGQWPNASLTGCFDIPVSYLRWRSPWSIAPLLLAILGII  574 (878)
T ss_pred             cCcCCcchhcccccCceeEEEcccCCCcceecCcceeccCCcCcCCCcccCCccccchhheeccccccHHHHHHHHHHHH
Confidence                                                                  03456889999999999999999999


Q ss_pred             HHHHhhheeeeecceeeEecCCccchhhhhhhhhhhccccccc-----ccchHHHHHHHHHhhhcCCCCCCCceEEEEee
Q psy8319         121 FAVGLIIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLNFNL-----PFACEPAAKLALEDVNNATDLLPGFKLQLHWN  195 (330)
Q Consensus       121 ~~~~~~~~~i~~r~~~~Ik~Ss~~l~~~iliG~ll~~~~~~~~-----~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~  195 (330)
                      .+++++++|++|++||+||+|++++++++|+|++++|.+.+++     ...|.++.          ..+..||       
T Consensus       575 ~tl~vlv~fvr~~~TpvVkasgreLsyiLL~gi~l~y~~tf~~i~eP~~~~C~lrr----------~~~gl~f-------  637 (878)
T KOG1056|consen  575 ATLFVLVLFVRYNDTPVVKASGRELSYILLLGIFLCYASTFFFIAEPTDISCRLRR----------TFLGLGF-------  637 (878)
T ss_pred             HHHHhheeEEEecCCceEEecCcEehHHHHHHHHHHHhhhheeEecCCCceeeEee----------eecchhH-------
Confidence            9999999999999999999999999999999999999998875     48999998          8999999       


Q ss_pred             cCCcCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhcccceeecccCceEEeeehhHHHHHHHHHhcceEeecc
Q psy8319         196 DSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKKVEPWKLYTMVTGLLSIDLVILLCWQFYDPL  275 (330)
Q Consensus       196 ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~~~~~~~l~~~v~~~~~v~li~~~~W~~v~~~  275 (330)
                                ++++++++.|++||++++.-+   ...+ ..      .+.+.++.+..+...+..+|++++..|..++||
T Consensus       638 ----------~i~ysalltKtnrI~rif~~~---~k~~-~~------~~~is~~~q~~i~~~l~~iQlvi~~~Wlv~~~p  697 (878)
T KOG1056|consen  638 ----------TICYSALLTKTNRIARIFEFS---KKSI-QR------PRFISPWSQVLITFILIGIQLVICVSWLVVEPP  697 (878)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHhcc---cccc-cc------cceeccchHHHHHHHHhhheeEEEEEEEeecCC
Confidence                      999999999999998886211   1111 11      245777777777778999999999999999998


Q ss_pred             eecccccccCCCCCCCCCCeEEeeccccccccCcchHHHHHHHHH--------hhhcccccC
Q psy8319         276 QRITENFPLETPPKSSADDIKISPELEHCESRNNNIWYGFFNRHL--------QVLGVKIPE  329 (330)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~i~~~~~y~~l--------~~~~~~~~~  329 (330)
                      ...   .+..     .+.++    ..+.|+-.+..++..++|.++        ++++|++||
T Consensus       698 ~~~---~~~~-----~~~~~----~~L~C~~~~~~f~~~l~Y~~lL~~~Ct~yA~ktR~~pe  747 (878)
T KOG1056|consen  698 GSV---RTYV-----SRREV----VILKCTEVDLGFLLSLGYSGLLILSCTVYAFKTRNLPE  747 (878)
T ss_pred             ccc---cccc-----cccce----EEEEecCcchHHHHHHHHHHHHHHHHHHHHhhccCChh
Confidence            663   1111     12222    246899889999999999863        888999998

>KOG1055|consensus

Probab=99.65  E-value=5.6e-17  Score=164.07  Aligned_cols=162  Identities=41%  Similarity=0.671  Sum_probs=129.5

Q ss_pred             ccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhh
Q psy8319         158 SLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAK  237 (330)
Q Consensus       158 ~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~  237 (330)
                      .+.|..+..|+|+++||+++||++..+++||+|++.++||+|+++.+...+|+.++..++.+++..|||+++..+++.++
T Consensus        54 ~~~~~~g~~~~Pav~~Al~~vn~~~~ilp~y~L~~~~~ds~C~~~~g~k~~fdll~~~p~k~mll~GCs~v~~~iaea~~  133 (865)
T KOG1055|consen   54 SGGWPGGQACLPAVELALEDVNSRSDILPGYRLKLIHHDSECDPGQGTKALYDLLYNGPNKLMLLGGCSSVTTLIAEAAK  133 (865)
T ss_pred             cCCCcCcccccHHHHHHHHHhhccccccCCcEEEEEeccccCCccccHHHHHHHHHcCCchheeccCCCCcchHHHhhcc
Confidence            44555679999999999999999999999999999999999999999999999999999999988899999999999999


Q ss_pred             ccccee------------ecccCceEEeeeh----hHHHHHHHHHhcceEeecceeccccccc-----CCCCCCCCCCeE
Q psy8319         238 MWNLVV------------KKVEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRITENFPL-----ETPPKSSADDIK  296 (330)
Q Consensus       238 ~w~~~~------------~~~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~~~~~~-----~~~~~~~~~~~~  296 (330)
                      +||+.+            +..+|+++++..+    +...+.++..++|.+++.+++.+++|..     +...+..+.++.
T Consensus       134 ~w~l~~lsy~~ssp~ls~r~rfp~~frt~PS~~~~np~rl~l~~~~~w~rvgt~~q~e~~f~~~~~dl~~~~~~~~ieiv  213 (865)
T KOG1055|consen  134 MWNLIVLSYGASSPALSNRKRFPTFFRTHPSANAHNPTRIKLLKKFGWKRVATLQQTEEVFSSTLNDLEARLKEAGIEIV  213 (865)
T ss_pred             ccceeeecccCCCccccchhhcchhhhcCCccccCCcceeeechhcCcceeeeeeeehhhhcchHHHHHHhhhccccEEE
Confidence            999887            3457774444433    4577999999999999999999888863     122111222222


Q ss_pred             Eee------c--cccccccCcchHHHHHHHH
Q psy8319         297 ISP------E--LEHCESRNNNIWYGFFNRH  319 (330)
Q Consensus       297 ~~~------~--~~~C~~~~~~i~~~~~y~~  319 (330)
                      ...      .  +...++++.+++++++|..
T Consensus       214 ~~qsf~~dp~~~vk~l~~~D~RiI~g~f~~~  244 (865)
T KOG1055|consen  214 FRQSFSSDPADSVKNLKRQDARIIVGLFYET  244 (865)
T ss_pred             EeeccccCHHHHHhhccccchhheeccchHh
Confidence            111      1  1234568999999999974

>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.55  E-value=5.5e-16  Score=141.27  Aligned_cols=161  Identities=21%  Similarity=0.363  Sum_probs=120.3

Q ss_pred             HHHHHHHHhhheeeeecceeeEecCCccchhhhhhhhhhhccccccc-----ccchHHHHHHHHHhhhcCCCCCCCceEE
Q psy8319         117 VGILFAVGLIIFNICYRHRRVIASSHPVCNTIMLVGIAFCMSLNFNL-----PFACEPAAKLALEDVNNATDLLPGFKLQ  191 (330)
Q Consensus       117 ~gi~~~~~~~~~~i~~r~~~~Ik~Ss~~l~~~iliG~ll~~~~~~~~-----~~~c~~~~~~A~~~iN~~~~ll~gf~l~  191 (330)
                      +|+++++++++++++|||+|+||+|||.++.++++|++++|.+.+.+     +..|..+.          |.+..||   
T Consensus         1 ~gil~~~~~~i~~~~~r~~~~i~~s~~~l~~~lL~G~~l~~~~~~~~~~~~s~~~C~~r~----------~~~~l~f---   67 (238)
T PF00003_consen    1 LGILFTIFILIIFIRNRNTPIIRASSPELLYILLLGCLLLYSSVFLFLLPPSDILCTLRR----------WLFSLGF---   67 (238)
T ss_pred             ChhhHHHHHHHHHHhhcCCCceecCCHhHHHHHHHHHHHHHHHHHHhccCcCCcEEEEee----------eeeeeeh---
Confidence            47888888889999999999999999999999999999999888764     47899999          9999999   


Q ss_pred             EEeecCCcCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhcccceeeccc-CceEEeeehhHHHHHHHHHhcce
Q psy8319         192 LHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKKVE-PWKLYTMVTGLLSIDLVILLCWQ  270 (330)
Q Consensus       192 l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~~~~-~~~l~~~v~~~~~v~li~~~~W~  270 (330)
                                    ++++++++.|+||++.++.       .++..+     .+... ++.+...+...+++|++....|.
T Consensus        68 --------------~l~~~~ll~K~~ri~~if~-------~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~ii~~~w~  121 (238)
T PF00003_consen   68 --------------TLIFSALLAKTWRIYRIFR-------NPSRKR-----RRLISSNRSLLLLVLLLVLVQVIILIIWL  121 (238)
T ss_pred             --------------HhhhhHHHHhhhheeeeec-------cCCCCC-----cccccCCcchhhheeeeeeehhhhhhhhh
Confidence                          9999999999999998862       111111     01112 55667777778888999999999


Q ss_pred             EeecceecccccccCCCCCCCCCCeEEeeccccccccCcchHHHHHHHH----------HhhhcccccC
Q psy8319         271 FYDPLQRITENFPLETPPKSSADDIKISPELEHCESRNNNIWYGFFNRH----------LQVLGVKIPE  329 (330)
Q Consensus       271 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~i~~~~~y~~----------l~~~~~~~~~  329 (330)
                      .++|++++. +..       .+    .......|+ ++...|.++.+.|          ++...|++|+
T Consensus       122 ~~~p~~~~~-~~~-------~~----~~~~~~~C~-~~~~~~~~~~~~y~~~Ll~~~~~la~~~R~~~~  177 (238)
T PF00003_consen  122 ILDPPTPVS-DID-------IS----SNEIYLSCS-SNSNIWLILSLGYNGLLLLIGFFLAFKTRNVPS  177 (238)
T ss_pred             hcccccccc-ccc-------cc----ceEEEEEec-CCccchHHHHHHHHHHHHHHHHHHHHhhCCCCc
Confidence            999995421 110       11    112346896 5677777655443          3566677774

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents the C-terminal region of family 3 GPCR receptor proteins, which contains the seven transmembrane region. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness []. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G

Probab=98.87  E-value=1e-08  Score=99.89  Aligned_cols=114  Identities=11%  Similarity=0.209  Sum_probs=92.7

Q ss_pred             ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhccccee
Q psy8319         164 PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVV  243 (330)
Q Consensus       164 ~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~  243 (330)
                      ...+..++++|+|+||++..++.|++|++.+.|++|++..+...+...+..+....+++|.||..+..+++.+..|++|+
T Consensus        16 ~~~~~~a~~lAi~~IN~~~~~l~~~~l~~~~~D~~~~~~~a~~~~~~l~~~~~v~aiiGp~~S~~~~av~~va~~~~iP~   95 (391)
T cd06372          16 AQRLGAALQIAMDKVNSDPVYLGNYSMEFTYTNSTCSAKESLAGFIDQVQKEHISALFGPACPEAAEVTGLLASQWNIPM   95 (391)
T ss_pred             hhhHHHHHHHHHHHHhcCCCCCCCceEEEEEecCCCCccHHHHHHHHHHHhcCceEEECCCCCcHHHHHHHHHhccCccE
Confidence            35566899999999999999999999999999999999999999888776545555666999999888899999999988


Q ss_pred             ec------------ccCceEEeeeh----hHHHHHHHHHhcceEeeccee
Q psy8319         244 KK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQR  277 (330)
Q Consensus       244 ~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~  277 (330)
                      ..            .+|++.++..+    +.++++++.+++|++++.++.
T Consensus        96 is~~s~s~~ls~~~~~~~~~r~~p~~~~~~~a~~~l~~~~~w~~vaii~~  145 (391)
T cd06372          96 FGFVGQTAKLDNRFLYDTYVKLVPPKQKIGEVLQKSLQHFGWKHIGLFGG  145 (391)
T ss_pred             EEeecCCccccccccCCceEEecCchhhHHHHHHHHHHHCCCeEEEEEEe
Confidence            32            23444444433    567889999999999999864

This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.

>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor

Probab=98.87  E-value=2.5e-09  Score=103.77  Aligned_cols=66  Identities=29%  Similarity=0.439  Sum_probs=58.2

Q ss_pred             hHHHHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEeeCCcEEEEEEEECCCCceeec-CccccCC
Q psy8319          19 KEIADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVINGSYTKLGFYDTQADNLTWF-DRERWIG   86 (330)
Q Consensus        19 ~~~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q~~~~v~VG~y~~~~~~l~~~-~~i~W~~   86 (330)
                      ...+++++++|++++|+|+||+|+||+||||. ..|+|.|+|++.+++||.|+.  +.+.++ ++|.|++
T Consensus       310 ~~~g~~l~~~l~~v~f~G~tg~i~Fd~~Gd~~~~~~~I~~~~~~~~~~VG~w~~--~~l~~~~~~i~W~~  377 (377)
T cd06379         310 WETGPLFKRALMSSKYPGETGRVEFNDDGDRKFANYDIMNIQNRKLVQVGLYNG--DILRLNDRSIIWPG  377 (377)
T ss_pred             CcchHHHHHHHHhCCcCCccCceEECCCCCccCccEEEEEecCCCceEeeEEcC--cEEEecCceeeCCC
Confidence            45788999999999999999999999999997 689999999888999999985  367776 6899974

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore

>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily

Probab=98.84  E-value=4.8e-09  Score=105.23  Aligned_cols=63  Identities=14%  Similarity=0.206  Sum_probs=53.9

Q ss_pred             HHHHHHHHhcceEEeeee-eEEEccCCCcceeEEEEEee--CC---cEEEEEEEEC---CCCceeec-Ccccc
Q psy8319          22 ADDIYAAINSTQFTGVSG-DVAFSSQGDRIALTQIEQVI--NG---SYTKLGFYDT---QADNLTWF-DRERW   84 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG-~V~Fd~nGdr~~~y~I~q~q--~~---~~v~VG~y~~---~~~~l~~~-~~i~W   84 (330)
                      .++|+++|+|++|.|.+| +|+||+|||+.+.|+|.|||  ++   ++++||.|+.   ..+.+.++ ++|.|
T Consensus       397 ~~~l~~~l~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~q~~~~~~~~~~~VG~~~~~~~~~~~l~i~~~~i~W  469 (469)
T cd06365         397 PWQLHSFLKNIQFKNPAGDEVNLNQKRKLDTEYDILNYWNFPQGLGLKVKVGEFSPQAPSGQQLSISEEMIEW  469 (469)
T ss_pred             HHHHHHHHHhccccCCCCCEEEecCCCCcCceeeEEEEEECCCCCEEEEEEEEEeCCCCCCcEEEEehhhccC
Confidence            568999999999999999 69999999999999999998  22   4899999984   23467776 67888

Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.

>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor

Probab=98.83  E-value=1.3e-08  Score=99.76  Aligned_cols=125  Identities=22%  Similarity=0.297  Sum_probs=94.4

Q ss_pred             hhhhhhcccccc--cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCC-----cCCchhHHHHHHhhhccccEEEEee
Q psy8319         151 VGIAFCMSLNFN--LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSE-----CEPGLGASVMYNLLYNNPQKLMLLA  223 (330)
Q Consensus       151 iG~ll~~~~~~~--~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~-----c~~~~~~t~~~~~l~~k~~ri~~i~  223 (330)
                      +|++++.+....  ....|.+++++|+|+||++..+++|++|++++.|++     |....+...+.+....+....+++|
T Consensus         2 ~g~l~~~~~~~~~~~~~~~~~a~~lAve~IN~~~gil~g~~l~~~~~D~~~~~~~c~~~~~~~~~~~~~~~~~v~aiiGp   81 (405)
T cd06385           2 LAVILPLTNTSYPWAWPRVGPALERAIDRVNADPDLLPGLHLQYVLGSSENKEGVCSDSAAPLVAVDLKFTHNPWAFIGP   81 (405)
T ss_pred             eeEECCCCCCcCccchhhhHHHHHHHHHHHhcCCCCCCCceEEEEEccccccCCCCccccchHHHHHHHHhcCCcEEECC
Confidence            678888766532  125789999999999999999999999999999995     5555666666665555555556679


Q ss_pred             cccceeeehhhhhhcccceee------------cccCceEEeeeh----hHHHHHHHHHhcceEeecc
Q psy8319         224 GCSTVCTTVAEAAKMWNLVVK------------KVEPWKLYTMVT----GLLSIDLVILLCWQFYDPL  275 (330)
Q Consensus       224 ~cs~~~~~va~~~~~w~~~~~------------~~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~  275 (330)
                      .||..+..++..+..|++|+.            ..+|+.++....    +.++++++.+++|++++.+
T Consensus        82 ~~S~~~~~va~~a~~~~iP~Is~~a~~~~l~~~~~~~~~~R~~p~~~~~~~a~~~~~~~~~w~~va~i  149 (405)
T cd06385          82 GCDYTASPVARFTTHWDVPLVTAGAPALGFGVKDEYATITRTGPTHKKLGEFVLHIHQHFGWRSHAML  149 (405)
T ss_pred             CccchHHHHHHHHhccCCcEEccccChhhcCCcccCcceEEecCchHHHHHHHHHHHHhCCCeEEEEE
Confidence            999999888999999999872            235553333333    3577889999999998843

Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.

>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily

Probab=98.76  E-value=1.4e-08  Score=103.00  Aligned_cols=63  Identities=22%  Similarity=0.394  Sum_probs=54.2

Q ss_pred             HHHHHHHHhcceEEeeee-eEEEccCCCcceeEEEEEeeC----C--cEEEEEEEECC---CCceeec-Ccccc
Q psy8319          22 ADDIYAAINSTQFTGVSG-DVAFSSQGDRIALTQIEQVIN----G--SYTKLGFYDTQ---ADNLTWF-DRERW   84 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG-~V~Fd~nGdr~~~y~I~q~q~----~--~~v~VG~y~~~---~~~l~~~-~~i~W   84 (330)
                      .++|+++|+||+|+|.+| +|.||+|||+.+.|||.|||.    |  .+++||.|+..   .+.|.++ ++|.|
T Consensus       437 ~~~l~~~L~~v~F~~~~g~~v~Fd~~Gd~~~~YdI~n~q~~~~~~~~~~v~VG~~~~~~~~~~~l~i~~~~i~W  510 (510)
T cd06364         437 AWQVLKHLRHLNFTDNMGEQVRFDEGGDLVGNYSIINWHLSPEDGSVVFKEVGYYNVYAKKGERLFINESKILW  510 (510)
T ss_pred             HHHHHHHHHhcEEecCCCCEEEEecCCCCccceeEEEeeecCCCCcEEEEEEEEEcCCCCCCceEEeccccccC
Confidence            679999999999999998 799999999999999999992    2  37999999842   3468776 67888

Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci

>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor

Probab=98.76  E-value=3.4e-08  Score=96.53  Aligned_cols=113  Identities=20%  Similarity=0.294  Sum_probs=87.4

Q ss_pred             cchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhcccceee
Q psy8319         165 FACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVK  244 (330)
Q Consensus       165 ~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~  244 (330)
                      ..+..++++|+|+||++..++.|++|++++.|++|++.. ...++..+..+....+++|.||..+..+++.+..|++|+.
T Consensus        17 ~~~~~a~~lAie~IN~~~~ll~g~~l~~~~~d~~~~~~~-~~~~~~~l~~~~v~aiiGp~~s~~~~~va~ia~~~~iP~I   95 (387)
T cd06386          17 ARVAPAIEYAQRRLEANRLLFPGFRFNVHYEDSDCGNEA-LFSLVDRSCARKPDLILGPVCEYAAAPVARLASHWNIPMI   95 (387)
T ss_pred             hhhHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCcCCchH-HHHHHHHHHhhCCCEEECCCCccHHHHHHHHHHhCCCcEE
Confidence            567899999999999998888999999999999998743 3333444434444456679999999999999999999883


Q ss_pred             c-------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319         245 K-------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       245 ~-------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      +             .+|+ ++++.+     +.++++++.++.|+.++.++...
T Consensus        96 s~~a~~~~~s~~~~~yp~-~~R~~p~~~~~~~a~~~ll~~~~W~~vaiiy~~~  147 (387)
T cd06386          96 SAGALAAGFSHKKSEYSH-LTRVAPSYVKMGETFSALFERFHWRSALLVYEDD  147 (387)
T ss_pred             ccccCchhhccCcccCCe-eEEecCchHHHHHHHHHHHHhCCCeEEEEEEEcC
Confidence            2             1333 445544     46778999999999999998644

Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.

>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family

Probab=98.73  E-value=5e-08  Score=95.25  Aligned_cols=129  Identities=24%  Similarity=0.339  Sum_probs=100.5

Q ss_pred             hhhhhhccc-ccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCc----CCchhHHHHHHhhhccccEEEEeec
Q psy8319         151 VGIAFCMSL-NFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSEC----EPGLGASVMYNLLYNNPQKLMLLAG  224 (330)
Q Consensus       151 iG~ll~~~~-~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c----~~~~~~t~~~~~l~~k~~ri~~i~~  224 (330)
                      +|.++++++ ... .+..+..++++|+|+||++..++.|+++++++.|++|    ++..+...+...+..+....+++|.
T Consensus         2 ~g~l~p~~~~~~~~~~~~~~~a~~lAve~IN~~gg~l~G~~l~~~~~D~~~~~~~~~~~a~~~a~~~~~~~~v~aiiGp~   81 (396)
T cd06373           2 LAVLLPKNNTSYPWSLPRVGPAIDIAVERVNADPGLLPGHNITLVFEDSECKCGCSESEAPLVAVDLYFQHKPDAFLGPG   81 (396)
T ss_pred             eEEEcCCCCCCcccchhhhhhHHHHHHHHHhcCCCcCCCeEEEEEEecCccccccchhhhHHHHHHHHhccCCeEEECCC
Confidence            577888875 222 3467889999999999999888899999999999999    8999888888777666555566699


Q ss_pred             ccceeeehhhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceeccc
Q psy8319         225 CSTVCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRITE  280 (330)
Q Consensus       225 cs~~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~~  280 (330)
                      ||..+..++..+..|++|...            .+++ ++++.+     +..+++++.+++|++++.++.+..
T Consensus        82 ~S~~~~av~~~~~~~~ip~Is~~as~~~lt~~~~~~~-~fr~~p~~~~~~~a~~~~~~~~~w~~vaii~~~~~  153 (396)
T cd06373          82 CEYAAAPVARFAAHWNVPVLTAGAPAAGFSDKSEYST-LTRTGPSYTKLGEFVLALHEHFNWSRAALLYHDDK  153 (396)
T ss_pred             ccchhHHHHHHHhcCCCceECccCCccccccchhcCc-eeeccccHHHHHHHHHHHHHHcCCeEEEEEEECCC
Confidence            999988888888889888732            2344 444444     346678889999999999976543

Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli

>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily

Probab=98.70  E-value=5.5e-08  Score=97.63  Aligned_cols=116  Identities=14%  Similarity=0.141  Sum_probs=92.1

Q ss_pred             ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhc-------------cccEEEEeecccceee
Q psy8319         164 PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYN-------------NPQKLMLLAGCSTVCT  230 (330)
Q Consensus       164 ~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~-------------k~~ri~~i~~cs~~~~  230 (330)
                      +.....+..+|+|+||++..+++|++|.+.+.|+.|++..++..+++.+..             +....++++.||..+.
T Consensus        38 ~~~~~~Am~~Ai~~IN~~~~lLp~~~Lg~~i~dtc~~~~~a~~~~~~~~~~~~~~~~~~~C~~~~~vvavIG~~~S~~s~  117 (469)
T cd06365          38 NYQHVLALLFAIEEINKNPHLLPNISLGFHIYNVLHSDRKALESSLMWLSGEGETIPNYSCRRQRKSVAVIGGPSWALSA  117 (469)
T ss_pred             hhHHHHHHHHHHHHHhCCCCCCCCceEEEEEECCCCccHHHHHHHHHHHhCCCcccCCccCCCCCceEEEEcCCccHHHH
Confidence            344567999999999999999999999999999999999999998887753             1222334489998888


Q ss_pred             ehhhhhhcccceee------------cccCceEEeeeh----hHHHHHHHHHhcceEeecceecc
Q psy8319         231 TVAEAAKMWNLVVK------------KVEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       231 ~va~~~~~w~~~~~------------~~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      .++.....|++|+.            ..+|+++++.++    +.++++++.++.|+.++.++.+.
T Consensus       118 ~va~i~~~~~IP~Is~~sts~~lsd~~~yp~ffRt~psd~~q~~ai~~li~~f~W~~Vaiv~~d~  182 (469)
T cd06365         118 TIATLLGLYKFPQLTYGPFDPLLSDRVQFPSLYQMAPKDTSLPLGMVSLMLHFSWTWVGLVISDD  182 (469)
T ss_pred             HHHHHhhhhcccceeeccCCccccchhhCCcceEecCCchhHHHHHHHHHHhcCCeEEEEEEecC
Confidence            88888899998872            235765544444    57889999999999999887643

Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.

>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor

Probab=98.70  E-value=4.5e-08  Score=98.17  Aligned_cols=116  Identities=16%  Similarity=0.224  Sum_probs=92.1

Q ss_pred             ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhc-------------------------cccE
Q psy8319         164 PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYN-------------------------NPQK  218 (330)
Q Consensus       164 ~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~-------------------------k~~r  218 (330)
                      +.....++.+|+|+||++..+++|++|.+.++||.|++..|+..+++.+..                         +...
T Consensus        40 g~~~~~Am~~Aie~IN~~~~lLp~~~Lg~~i~Dtc~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~  119 (472)
T cd06374          40 GIQRVEAMFHTLDRINADPVLLPNITLGCEIRDSCWHSSVALEQSIEFIRDSLISIRDEKDGVNPDGQSPGPNKSKKPIV  119 (472)
T ss_pred             hHHHHHHHHHHHHHHhCCcccCCCceeccEEEEcCCCchHHHHHHHHHHhhcccccccccccccccCCCcccccCCCCeE
Confidence            345568899999999999999999999999999999999999999888752                         1223


Q ss_pred             EEEeecccceeeehhhhhhcccceee------------cccCceEEeeeh-----hHHHHHHHHHhcceEeecceeccc
Q psy8319         219 LMLLAGCSTVCTTVAEAAKMWNLVVK------------KVEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRITE  280 (330)
Q Consensus       219 i~~i~~cs~~~~~va~~~~~w~~~~~------------~~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~~  280 (330)
                      .+++|.||..+..++..+..|++|+.            ..+|++ +++++     +.++++++.+++|+.++.++.+..
T Consensus       120 aiiGp~~S~~~~ava~~~~~~~iP~Is~~ats~~ls~~~~~p~~-fRt~p~d~~~~~al~~l~~~~~W~~Vaii~~~~~  197 (472)
T cd06374         120 GVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLFKYF-LRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGN  197 (472)
T ss_pred             EEECCCcchHHHHHHHHhhhhcccccccccCchhhcccccCCce-EEcCCChHHHHHHHHHHHHHCCCcEEEEEEecch
Confidence            34458999888888888888988872            234664 45544     467889999999999999987543

Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.

>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR)

Probab=98.67  E-value=5.4e-08  Score=96.75  Aligned_cols=113  Identities=19%  Similarity=0.277  Sum_probs=87.5

Q ss_pred             chHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhc----------------------cccEEEEee
Q psy8319         166 ACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYN----------------------NPQKLMLLA  223 (330)
Q Consensus       166 ~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~----------------------k~~ri~~i~  223 (330)
                      ....++++|+|+||++..+++|++|++.+.|+.+++..+...+...+..                      +....++++
T Consensus        31 ~~~~a~~~Aie~IN~~~~iLpg~~L~~~i~D~~~~~~~a~~~a~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~aviG~  110 (452)
T cd06362          31 QRLEAMLFALDEINNDPTLLPGITLGAHILDTCSRDTYALEQSLEFVRASLTKIDDCVYCDGGSPPPNNSPKPVAGVIGA  110 (452)
T ss_pred             HHHHHHHHHHHHhhCCCCCCCCCeeCcEEEEeCCCchHHHHHHHHHHhhhhhcCCccccccCCCcccccCCCCeEEEECC
Confidence            3378899999999999999999999999999999999888877765532                      223334458


Q ss_pred             cccceeeehhhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319         224 GCSTVCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       224 ~cs~~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      .||..+..++..+..|++|+..            .+|+ ++++++     +.++++++.++.|+.++.++.+.
T Consensus       111 ~~S~~~~av~~~~~~~~ip~Is~~sts~~ls~~~~~~~-~fR~~p~d~~~~~a~~~~l~~~~w~~vaii~~~~  182 (452)
T cd06362         111 SYSSVSIQVANLLRLFKIPQISYASTSPELSDKTRYDY-FSRTVPPDSFQAQAMVDIVKAFNWTYVSTVASEG  182 (452)
T ss_pred             CCCchHHHHHHHhccccCcccccccCchhhccccccCC-EEEecCChHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence            8988888888888888887721            3466 444443     46788999999999999998754

Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.

>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor

Probab=98.62  E-value=8e-08  Score=96.17  Aligned_cols=116  Identities=15%  Similarity=0.197  Sum_probs=89.8

Q ss_pred             ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhc------------------------cccEE
Q psy8319         164 PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYN------------------------NPQKL  219 (330)
Q Consensus       164 ~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~------------------------k~~ri  219 (330)
                      +.....+..+|+|+||++..+++|++|.+.++|+.|++..++..+++.+..                        +....
T Consensus        29 g~~~~~Am~~AIe~IN~~~~lLp~~~Lg~~i~Dtc~~~~~a~~~~~~~i~~~~~~~~~~~~~C~~~~~~~~~~~~~~V~a  108 (458)
T cd06375          29 GIQRLEAMLFAIDRINNDPRILPGIKLGVHILDTCSRDTYALEQSLEFVRASLTKVDTSEYECPDGSYAVQENSPLAIAG  108 (458)
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCCCceeccEEEecCCCcHHHHHHHHHHHhhhhhcccccccccccCCccccccCCCCeEE
Confidence            456788999999999999999999999999999999999999888776631                        11222


Q ss_pred             EEeecccceeeehhhhhhcccceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecceecc
Q psy8319         220 MLLAGCSTVCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       220 ~~i~~cs~~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      ++++.||..+..++.....|++|+.+            .+|+++++..+    +.++++++.+++|+.++.++.+.
T Consensus       109 VIG~~~S~~s~ava~~~~~~~IP~Is~~sts~~Ls~~~~~~~ffRt~psd~~qa~ai~~ll~~~~W~~Vaii~~~~  184 (458)
T cd06375         109 VIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEG  184 (458)
T ss_pred             EEcCCCchHHHHHHHHhhhccccceeeccCChhhcccccCCCeEEecCCcHHHHHHHHHHHHHCCCeEEEEEEeCc
Confidence            34488888877788888888888731            24664444333    36788999999999999998754

Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes

>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors

Probab=98.62  E-value=4.8e-08  Score=94.15  Aligned_cols=62  Identities=18%  Similarity=0.288  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEee-CCcEEEEEEEECCCCceeec-CccccC
Q psy8319          20 EIADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVI-NGSYTKLGFYDTQADNLTWF-DRERWI   85 (330)
Q Consensus        20 ~~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q-~~~~v~VG~y~~~~~~l~~~-~~i~W~   85 (330)
                      .-+..|.++|++++|.|.||+|+||+||||. +.|+|.|+| +..+++||.|+.    +.++ +.|.|+
T Consensus       298 ~~g~~l~~~l~~~~f~G~tg~v~F~~~G~~~~~~~~I~~l~~~~~~~~VG~W~~----~~~~~~~i~w~  362 (362)
T cd06367         298 SSGQYLARFLMNVTFDGETGDVSFNEDGYLSNPKLVIINLRRNRKWERVGSWEN----GKLVMRYIVWP  362 (362)
T ss_pred             CchHHHHHHHhcccccCCCCceeECCCcccccceEEEEEecCCCcceEEEEEcC----CceecCcCCCC
Confidence            4467999999999999999999999999986 699999999 667999999973    4444 678895

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits

>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor

Probab=98.61  E-value=5.7e-08  Score=97.15  Aligned_cols=60  Identities=23%  Similarity=0.413  Sum_probs=52.4

Q ss_pred             HHHHHHHHhcceEEeeee-eEEEccCCCcceeEEEEEeeC-----CcEEEEEEEECCCCceeec-Ccccc
Q psy8319          22 ADDIYAAINSTQFTGVSG-DVAFSSQGDRIALTQIEQVIN-----GSYTKLGFYDTQADNLTWF-DRERW   84 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG-~V~Fd~nGdr~~~y~I~q~q~-----~~~v~VG~y~~~~~~l~~~-~~i~W   84 (330)
                      +++|+++|++|+|+|.+| +|+||+|||+.+.|+|.+||.     ..+++||.|+.   .+.++ +.|.|
T Consensus       397 ~~~l~~~L~~v~F~g~tg~~v~Fd~~G~~~~~Ydi~n~q~~~~~~~~~~~VG~w~~---~l~i~~~~i~W  463 (463)
T cd06376         397 GKKLLKYIRAVNFNGSAGTPVMFNENGDAPGRYDIFQYQITNTSSPGYRLIGQWTD---ELQLNIEDMQW  463 (463)
T ss_pred             HHHHHHHHHhCCccCCCCCeEEeCCCCCCCCceEEEEEEecCCCceeEEEEEEECC---eeEEccccccC
Confidence            679999999999999999 799999999999999999992     15899999973   56676 67888

Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.

>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues

Probab=98.58  E-value=1.7e-07  Score=91.43  Aligned_cols=127  Identities=15%  Similarity=0.167  Sum_probs=92.3

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      +|.+.+.++... .+..-..++++|+|+||++..+++|+++++++.|++|++..+.......  .+....+++|.||..+
T Consensus         2 ig~~~p~sg~~~~~g~~~~~a~~lAie~iN~~g~il~g~~l~~~~~d~~~~~~~a~~~~~~~--~~~V~aviGp~~S~~~   79 (382)
T cd06371           2 VGVLGPWSCDPIFSKALPDVAARLAVSRINRDPSLSLGYWFDYVLLPEPCETSRALAAFLGY--EGYASAFVGPVNPGYC   79 (382)
T ss_pred             ceEecCcccCchhhhhhHHHHHHHHHHHHhCCCCCCCCceEEEEEecCCCChhHHHHHHHcc--cCCceEEECCCCchHH
Confidence            455555544322 2344567899999999999998899999999999999987776554331  2334445569999999


Q ss_pred             eehhhhhhcccceeec------------ccCceEEeeeh--hHHHHHHHHHhcceEeecceeccc
Q psy8319         230 TTVAEAAKMWNLVVKK------------VEPWKLYTMVT--GLLSIDLVILLCWQFYDPLQRITE  280 (330)
Q Consensus       230 ~~va~~~~~w~~~~~~------------~~~~~l~~~v~--~~~~v~li~~~~W~~v~~~~~~~~  280 (330)
                      ..++..+..||+|+.+            .+++ ++++++  ...+++++.++.|++++.++....
T Consensus        80 ~a~a~va~~~~iP~Is~~a~~~~lt~~~~y~~-f~r~~~~~~~~~~~~~~~~~w~~vaii~~~~~  143 (382)
T cd06371          80 EAAALLAKEWDKALFSWGCVNYELDDVRSYPT-FARTLPSPSRVLFTVLRYFRWAHVAIVSSPQD  143 (382)
T ss_pred             HHHHHHHHhcCceEEecccCchhhcCcccCCC-ceecCCCcHHHHHHHHHHCCCeEEEEEEeccc
Confidence            9999999999998832            2344 445443  345678899999999999987654

This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge

>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure []

Probab=98.56  E-value=1.6e-07  Score=88.68  Aligned_cols=114  Identities=21%  Similarity=0.317  Sum_probs=94.0

Q ss_pred             hHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhcccceeec-
Q psy8319         167 CEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKK-  245 (330)
Q Consensus       167 c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~~-  245 (330)
                      |..++++|+|+||++..++.+++|++.+.|+.|++......+...+..+....+++|.|+..+..+++.+..|++|... 
T Consensus         2 ~~~a~~~Ai~~iN~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~v~aviGp~~~~~~~~~~~~~~~~~ip~is~   81 (348)
T PF01094_consen    2 VLAAVQLAIDEINNNPDLLPNITLEVQVFDTCSDDSFALQAAICSLNKQGVVAVIGPSCSSSAEAVASLASEWNIPQISP   81 (348)
T ss_dssp             HHHHHHHHHHHHHHSSTSSTTSEEEEEEEEETTTTHHHHHHHHHHHHHHTECEEEETSSHHHHHHHHHHHHHTT-EEEES
T ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEEEEEeeccCCcccccchhhhccCCCcEEEECCCcccccchhheeecccccceeec
Confidence            6789999999999999999999999999999988888887777777777777777899999888889999999998732 


Q ss_pred             ------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceecccc
Q psy8319         246 ------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRITEN  281 (330)
Q Consensus       246 ------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~~~  281 (330)
                                  .+|+ ++++++     ..++++++.++.|+.+..++.....
T Consensus        82 ~~~~~~ls~~~~~~~~-~~r~~p~~~~~~~a~~~~l~~~~w~~v~vv~~~~~~  133 (348)
T PF01094_consen   82 GSTSPSLSDRKTRYPT-FFRTVPSDSSQARALVDLLKHFGWTRVSVVYSDDDY  133 (348)
T ss_dssp             SGGSGGGGSTTTTTTT-EEESSB-HHHHHHHHHHHHHHTTSSEEEEEEESSHH
T ss_pred             cccccccccchhhccc-cccccccHHHHHHHHHHhhhcCCCceeeeecccccc
Confidence                        3456 444444     4688999999999999999876544

; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....

>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor

Probab=98.54  E-value=2e-07  Score=93.27  Aligned_cols=112  Identities=19%  Similarity=0.214  Sum_probs=84.7

Q ss_pred             chHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhc--------------------c--ccEEEEee
Q psy8319         166 ACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYN--------------------N--PQKLMLLA  223 (330)
Q Consensus       166 ~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~--------------------k--~~ri~~i~  223 (330)
                      ....++++|+|+||++..+++|++|++.+.|+.+++..++..++..+..                    +  ....+++|
T Consensus        31 ~~~~a~~~Aie~IN~~~~iLpg~~L~~~i~D~~~~~~~~~~~a~~~~~~l~~~~~~~~~C~~~~~~~~~~~~~V~aviG~  110 (463)
T cd06376          31 HRLEAMLYALDQINSDPDLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGA  110 (463)
T ss_pred             HHHHHHHHHHHHhhCCCCCCCCceEccEEEeccCCcHHHHHHHHHHHhhhhhcccccCcCCCCCccccCCCCCeEEEECC
Confidence            3478999999999999999999999999999988888777766654321                    1  12223448


Q ss_pred             cccceeeehhhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319         224 GCSTVCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI  278 (330)
Q Consensus       224 ~cs~~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~  278 (330)
                      .||..+..++.....+++|+.+            .+|++ +++++     +.++++++.+++|+.++.++.+
T Consensus       111 ~~S~~t~ava~i~~~~~iP~Is~~ats~~ls~~~~~~~f-fR~~p~d~~~~~ai~~~i~~~~w~~Vaii~~~  181 (463)
T cd06376         111 SASSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFF-SRVVPPDSFQAQAMVDIVKALGWNYVSTLASE  181 (463)
T ss_pred             CCchHHHHHHHHhccccCcccccccCChhhcccccCCce-EEccCCHHHHHHHHHHHHHHcCCeEEEEEEeC
Confidence            8888888788888888888732            24554 45544     3678899999999999999753

Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.

>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases

Probab=98.52  E-value=4.2e-07  Score=89.27  Aligned_cols=127  Identities=25%  Similarity=0.338  Sum_probs=95.7

Q ss_pred             hhhhhhhcccc-c-ccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319         150 LVGIAFCMSLN-F-NLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST  227 (330)
Q Consensus       150 liG~ll~~~~~-~-~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~  227 (330)
                      .+|.+.++++. . ..+..+..++++|+|+||++..++.|+++++.+.|++|++..+...+...+.. ....+++|.||.
T Consensus         2 ~iG~~~pltG~~~a~~G~~~~~a~~lAv~~IN~~ggil~g~~l~l~~~D~~~~~~~a~~~~~~li~~-~v~aiiGp~~S~   80 (404)
T cd06370           2 KVGYLAEWTTDRTDRLGLPISGALTLAVEDVNADPNLLPGYKLQFEWVDTHGDEVLSIRAVSDWWKR-GVVAFIGPECTC   80 (404)
T ss_pred             eeEecccccCCccccccccHHHHHHHHHHHHhCCCCCCCCCEEEEEEEecCCChHHHHHHHHHHHhc-CceEEECCCchh
Confidence            47888888873 4 34677788999999999999988889999999999999999999998887743 344445577764


Q ss_pred             eeeehhhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceeccc
Q psy8319         228 VCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRITE  280 (330)
Q Consensus       228 ~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~~  280 (330)
                      .  ..+..+..|++|...            .+|+ ++++.+     +.++++++.++.|++++.++.+..
T Consensus        81 ~--~~a~i~~~~~iP~Is~~a~~~~l~~~~~~~~-f~r~~~~~~~~~~a~~~~~~~~~w~~vaii~~~~~  147 (404)
T cd06370          81 T--TEARLAAAWNLPMISYKCDEEPVSDKSKYPT-FARTVPPSIQVVKSVIALLKHFNWNKFSVVYENDS  147 (404)
T ss_pred             H--HHHHHHhhcCCcEEecccCCccccccccCCC-eEEcCCCHHHHHHHHHHHHHHCCCcEEEEEEecCc
Confidence            3  345677888887731            2344 344443     256778889999999999987554

Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.

>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA)

Probab=98.50  E-value=3.9e-07  Score=87.21  Aligned_cols=128  Identities=32%  Similarity=0.500  Sum_probs=100.2

Q ss_pred             hhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccceee
Q psy8319         151 VGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCT  230 (330)
Q Consensus       151 iG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~  230 (330)
                      +|.++++++ -..+..+..++++|+|+||++-..+.|+++++++.|++|++..+...+-..+.......+++|.||..+.
T Consensus         2 IG~~~p~sG-a~~G~~~~~~~~lAv~~iN~~gg~~~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~~v~~viG~~~s~~~~   80 (350)
T cd06366           2 IGAIFDLSG-SWIGKAALPAIEMALEDVNADNSILPGYRLVLHVRDSKCDPVQAASAALDLLENKPVVAIIGPQCSSVAE   80 (350)
T ss_pred             EEEEEecCC-CcccHHHHHHHHHHHHHHhcCCCcCCCcEEEEEecCCCCCHHHHHHHHHHHhccCCceEEECCCcHHHHH
Confidence            577778876 4446778899999999999997677899999999999999999999888877665555566688888877


Q ss_pred             ehhhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceeccc
Q psy8319         231 TVAEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRITE  280 (330)
Q Consensus       231 ~va~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~~  280 (330)
                      .++..+..|++|...            .+++ ++++.+     ...+++++..++|.+++.++.+..
T Consensus        81 a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~-~~r~~p~~~~~~~a~~~~~~~~~~~~v~ii~~~~~  146 (350)
T cd06366          81 FVAEVANEWNVPVLSFAATSPSLSSRLQYPY-FFRTTPSDSSQNPAIAALLKKFGWRRVATIYEDDD  146 (350)
T ss_pred             HHHHHhhcCCeeEEeccCCCccccccccCCc-eEEcccchHhHHHHHHHHHHHCCCcEEEEEEEcCc
Confidence            777888888888621            2345 444443     356788889999999999987543

Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.

>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs)

Probab=98.49  E-value=3.9e-07  Score=86.80  Aligned_cols=114  Identities=25%  Similarity=0.385  Sum_probs=90.4

Q ss_pred             cchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhc-------------cccEEEEeecccceeee
Q psy8319         165 FACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYN-------------NPQKLMLLAGCSTVCTT  231 (330)
Q Consensus       165 ~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~-------------k~~ri~~i~~cs~~~~~  231 (330)
                      ..+.-++++|++.||++..++.|++|+++..|++|++..+...+...+..             .....+++|.||..+..
T Consensus        27 ~~~~~~~~~Av~~iN~~~~~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~~~~~~~~~~~~~v~aiiG~~~S~~~~a  106 (348)
T cd06350          27 LQAAEAMLFAVEEINNDPDLLPNITLGYHIYDSCCSPAVALRAALDLLLSGEGTTPPYSCRKQPKVVAVIGPGSSSVSMA  106 (348)
T ss_pred             HHHHHHHHHHHHHHcCCCccCCCCceeEEEEecCCcchHHHHHHHHHHhcCCCCCCCCcCCCCCceEEEECCCccHHHHH
Confidence            44456788999999999889999999999999999999999999888776             34555556889888877


Q ss_pred             hhhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319         232 VAEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       232 va~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      ++.....|++|...            .+++ ++++.+     ...+++++..++|++++.++.+.
T Consensus       107 ~~~~~~~~~vp~is~~~~~~~ls~~~~~~~-~fr~~p~~~~~~~a~~~~~~~~~~~~v~~l~~~~  170 (348)
T cd06350         107 VAELLGLFKIPQISYGATSPLLSDKLQFPS-FFRTVPSDTSQALAIVALLKHFGWTWVGLVYSDD  170 (348)
T ss_pred             HHHHHhcCcCceecccCCChhhccccccCC-eeEecCCcHHHHHHHHHHHHHCCCeEEEEEEecc
Confidence            78888888888731            2355 445544     36778899999999999998654

Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr

>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor

Probab=98.49  E-value=4.5e-07  Score=89.34  Aligned_cols=112  Identities=20%  Similarity=0.154  Sum_probs=87.5

Q ss_pred             chHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhc------------------cccEEEEeecccc
Q psy8319         166 ACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYN------------------NPQKLMLLAGCST  227 (330)
Q Consensus       166 ~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~------------------k~~ri~~i~~cs~  227 (330)
                      .-..++++|+|+||++. +++|.+|++...|++|++..+...+...+..                  +....++++.||.
T Consensus        36 ~~~~am~~AieeIN~~~-~Lpg~~L~~~i~Dt~~~~~~a~~~a~~li~~~~~~~~~~~~~c~~~~~~~~V~aVIG~~~S~  114 (403)
T cd06361          36 LQTLAMIHAIEMINNST-LLLGVTLGYEIYDTCSEVTTAMAAVLRFLSKFNCSRSTVEFKCDYSQYVPRIKAVIGAGYSE  114 (403)
T ss_pred             HHHHHHHHHHHHHhCCC-CCCCCEEceEEEeCCCChHHHHHHHHHHHhhcccccccccccccCCCCCCCeEEEECCCcch
Confidence            34578999999999998 8899999999999999999999988877753                  2233344588888


Q ss_pred             eeeehhhhhhcccceee------------cccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319         228 VCTTVAEAAKMWNLVVK------------KVEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       228 ~~~~va~~~~~w~~~~~------------~~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      .+..++.....+++|+.            ..+|+ ++|+++     +.++++++.+++|+.++.++.+.
T Consensus       115 ~s~ava~v~~~~~IP~IS~~ats~~Ls~~~~~~~-ffRt~p~D~~qa~ai~~li~~~~w~~Vaii~~~d  182 (403)
T cd06361         115 ISMAVSRMLNLQLIPQVSYASTAEILSDKIRFPS-FLRTVPSDFYQTKAMAHLIKKSGWNWVGIIITDD  182 (403)
T ss_pred             HHHHHHHHhccCCcceEecCcCCcccCCcccCCC-eeECCCchHhHHHHHHHHHHHcCCcEEEEEEecC
Confidence            88777777777887772            23466 455554     46889999999999999997643

This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.

>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor

Probab=98.49  E-value=3.3e-07  Score=89.82  Aligned_cols=63  Identities=21%  Similarity=0.387  Sum_probs=55.4

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEee---CCcEEEEEEEECCCCceeec--Ccccc
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVI---NGSYTKLGFYDTQADNLTWF--DRERW   84 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q---~~~~v~VG~y~~~~~~l~~~--~~i~W   84 (330)
                      ++.+.+.|++++|.|++|+|.||++|||.+.|.+.|++   +|+++.||.|+..++++++.  ++|.|
T Consensus       338 g~~i~~~l~~~~f~G~tG~v~fd~~G~r~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~i~w  405 (405)
T cd06385         338 GTAITQRMWNRTFYGVTGFVKIDDNGDRETDFALWDMTDTESGDFQVVSVYNGTQKQLVAVPGRKIQW  405 (405)
T ss_pred             HHHHHHHhhCceEeeceeEEEEcCCCCEeceeEEEEccCCCCCcEEEEEEEcccCcEEEEcCCcccCC
Confidence            57888999999999999999999999999999988774   67899999999877888873  57777

Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.

>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor

Probab=98.47  E-value=2e-07  Score=93.44  Aligned_cols=59  Identities=24%  Similarity=0.320  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHHhcceEEeeee-eEEEccCCCcceeEEEEEeeC---C--cEEEEEEEECCCCceeec
Q psy8319          19 KEIADDIYAAINSTQFTGVSG-DVAFSSQGDRIALTQIEQVIN---G--SYTKLGFYDTQADNLTWF   79 (330)
Q Consensus        19 ~~~~~~l~~~l~~vsF~GisG-~V~Fd~nGdr~~~y~I~q~q~---~--~~v~VG~y~~~~~~l~~~   79 (330)
                      ...+++|+++|++++|.|++| +|+||+|||+.+.|+|.|||.   +  .+++||.|+.  +.|.++
T Consensus       406 ~~~~~~l~~~l~~v~F~g~tG~~v~Fd~~G~~~~~ydI~n~~~~~~~~~~~~~VG~w~~--~~l~~~  470 (472)
T cd06374         406 PIDGRKLLEYLLKTSFSGVSGEEVYFDENGDSPGRYDIMNLQYTEDLRFDYINVGSWHE--GDLGID  470 (472)
T ss_pred             CCCHHHHHHHHHhCcccCCCCCeEEEcCCCCCCCceEEEEEEECCCCCEEEEEEEEEeC--Cccccc
Confidence            355889999999999999999 799999999999999999993   2  4899999974  345543

Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.

>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor

Probab=98.43  E-value=4.5e-07  Score=89.21  Aligned_cols=70  Identities=17%  Similarity=0.173  Sum_probs=59.2

Q ss_pred             cCChHHHHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEeeC--C--cEEEEEEEECCCCceeec-CccccC
Q psy8319          16 YTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVIN--G--SYTKLGFYDTQADNLTWF-DRERWI   85 (330)
Q Consensus        16 y~~~~~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~--~--~~v~VG~y~~~~~~l~~~-~~i~W~   85 (330)
                      ++++.-++.|.++|++++|.|++|+++||++||+...|+|.|+|.  +  ++++||.|+..++.|.++ ++|+|+
T Consensus       336 ~~~~~~~~~l~~~L~~~~~~g~~g~i~fd~~G~~~~~~~i~~~~~~~~~~~~~~vG~~~~~~~~l~~~~~~i~w~  410 (410)
T cd06363         336 KRVPVYPWQLLEELKKVNFTLLGQTVRFDENGDPNFGYDIVVWWWDNSSGTFEEVGSYSFYPIRLTINRSKIQWH  410 (410)
T ss_pred             CCCCCCHHHHHHHHhccEEecCCcEEEeCCCCCCccceEEEEEEEcCCceeEEEEEEEECCCCEEEEehHhcccC
Confidence            334555778999999999999999999999999888899999962  2  589999999766788886 689995

Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.

>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G

Probab=98.41  E-value=3.6e-07  Score=89.06  Aligned_cols=53  Identities=15%  Similarity=0.327  Sum_probs=45.7

Q ss_pred             HHHHHHHHh---cceEEeeeeeEEEccCCCcceeEEEEEeeC--C--cEEEEEEEECCCC
Q psy8319          22 ADDIYAAIN---STQFTGVSGDVAFSSQGDRIALTQIEQVIN--G--SYTKLGFYDTQAD   74 (330)
Q Consensus        22 ~~~l~~~l~---~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~--~--~~v~VG~y~~~~~   74 (330)
                      +.++.+.|+   +++|+|+||+|.||+||||.+.|.|.|+|+  +  .+++||+|+..++
T Consensus       329 g~~l~~~l~~~~~~~f~G~tG~v~fd~~G~r~~~y~i~~~~~~~~~~~~~~vg~~~~~~~  388 (391)
T cd06372         329 GRQLVSTLRGANQVELQGITGLVLLDEQGKRQMDYSVYALQKSGNSSLFLPFLHYDSHQK  388 (391)
T ss_pred             HHHHHHHHhhccCceEeccceeEEECCCCCcceeEEEEeccccCCccceeeEEEecchhh
Confidence            356778888   799999999999999999999999999994  2  4899999986543

This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.

>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors

Probab=98.39  E-value=1.2e-06  Score=84.95  Aligned_cols=130  Identities=23%  Similarity=0.414  Sum_probs=99.1

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      +|.+.++++... .+..+..++++|+|+||++-..+.|++|++++.|++|++..+...+...+..+....+++|.||...
T Consensus         2 vG~~~~~sG~~~~~g~~~~~a~~lAve~iN~~g~~i~g~~l~~~~~D~~~~~~~a~~~a~~l~~~~~v~aiiG~~~s~~~   81 (389)
T cd06352           2 VGVLLPWNTDYPFSLARVGPAIQLAVERVNADPNLLPGYDFTFVYLDTECSESVALLAAVDLYWEHNVDAFIGPGCPYAC   81 (389)
T ss_pred             eEEEcCCCCCCCchhhcchHHHHHHHHHHhcCCCCCCCceEEEEEecCCCchhhhHHHHHHHHhhcCCcEEECCCChhHH
Confidence            466677766443 3577888999999999999877789999999999999999999999888777666666678888877


Q ss_pred             eehhhhhhcccceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecceeccc
Q psy8319         230 TTVAEAAKMWNLVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRITE  280 (330)
Q Consensus       230 ~~va~~~~~w~~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~~  280 (330)
                      ..++.....+++|...            .+++.++....    +..+++++.+.+|+.+..++.+..
T Consensus        82 ~a~~~~~~~~~ip~Is~~~~~~~~~~~~~~~~~fr~~~~~~~~~~a~~~~l~~~~~~~v~ii~~~~~  148 (389)
T cd06352          82 APVARLAAHWNIPMISWGCVALSLSDKSEYPTLTRTLPPARKLGEAVLALLRWFNWHVAVVVYSDDS  148 (389)
T ss_pred             HHHHHHHhcCCCCEecccccccccCccccCCceeecCCcHHHHHHHHHHHHHHcCceEEEEEEecCC
Confidence            7777778888887621            23553433333    345778888899999998876543

Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l

>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor

Probab=98.36  E-value=1.6e-06  Score=84.88  Aligned_cols=113  Identities=22%  Similarity=0.253  Sum_probs=81.4

Q ss_pred             cchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCC----chhHHHHHHhhhccccEEEEeecccceeeehhhhhhccc
Q psy8319         165 FACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEP----GLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWN  240 (330)
Q Consensus       165 ~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~----~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~  240 (330)
                      ..|.+++++|+|+||++..++.|++|++.+.|++|++    ..+........+.+...++++|.||..+..++..+..|+
T Consensus        18 ~~~~~a~~lAieeiN~~g~il~g~~l~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~v~aviGp~~S~~~~av~~i~~~~~   97 (399)
T cd06384          18 PRVGPAIRMAVERIQNKGKLLRGYTITLLNKSSELNGGCSESLAPLHAVDLKLYSDPDVFFGPGCVYPTASVARFATHWR   97 (399)
T ss_pred             hhhHHHHHHHHHHHhccCCcCCCceEEEEEeccCCccccchhhhHHHHHHHHhhcCCCEEECCCCchHHHHHHHHHhhcC
Confidence            4678999999999999988889999999999997654    443333333333344455667999999988899999999


Q ss_pred             ceeec-------------ccCceEEeeeh----hHHHHHHHHHhcce-Eeeccee
Q psy8319         241 LVVKK-------------VEPWKLYTMVT----GLLSIDLVILLCWQ-FYDPLQR  277 (330)
Q Consensus       241 ~~~~~-------------~~~~~l~~~v~----~~~~v~li~~~~W~-~v~~~~~  277 (330)
                      +|+..             .+|+.++....    +..+..++.++.|+ .++.++.
T Consensus        98 iP~Is~~at~~~ls~~~~~y~~~fR~~p~~~~~~~~~~~i~~~~~w~~~vaiiy~  152 (399)
T cd06384          98 LPLITAGAPAFGFSNKTDEYRTTVRTGPSTTKLGEFVNHLHEHFNWTSRAALLYL  152 (399)
T ss_pred             CcEEeeccchhhhccccccCCceEEecCcHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence            98721             23444433333    23467888999999 6777764

Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.

>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR)

Probab=98.36  E-value=5.2e-07  Score=89.71  Aligned_cols=51  Identities=22%  Similarity=0.397  Sum_probs=45.9

Q ss_pred             HHHHHHHHhcceEEeeee-eEEEccCCCcceeEEEEEeeC----CcEEEEEEEECC
Q psy8319          22 ADDIYAAINSTQFTGVSG-DVAFSSQGDRIALTQIEQVIN----GSYTKLGFYDTQ   72 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG-~V~Fd~nGdr~~~y~I~q~q~----~~~v~VG~y~~~   72 (330)
                      +++|+++|++++|.|++| +|+||++|||.+.|+|.|||.    ..+++||.|++.
T Consensus       392 ~~~l~~~l~~v~f~g~tg~~v~Fd~~G~~~~~y~I~~~~~~~~~~~~~~VG~w~~~  447 (452)
T cd06362         392 GRKLLFYLRNVSFSGLAGGPVRFDANGDGPGRYDIFNYQRTNGKYDYVKVGSWKGE  447 (452)
T ss_pred             HHHHHHHHHhCCcCCCCCceEEECCCCCCCCceEEEEEEEcCCceEEEEEEEEecc
Confidence            678999999999999998 899999999999999999993    248999999743

Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.

>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor

Probab=98.35  E-value=8.8e-07  Score=87.26  Aligned_cols=56  Identities=16%  Similarity=0.175  Sum_probs=49.1

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEeeCC----cEEEEEEEECCCCcee
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVING----SYTKLGFYDTQADNLT   77 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~~----~~v~VG~y~~~~~~l~   77 (330)
                      +++|+++|++++|.|.+|+|.||+|||+.+.|+|.|||++    .+++||.|++.++.+.
T Consensus       340 ~~~l~~~L~~~~f~g~~~~v~Fd~~gd~~~~y~I~~~~~~~~~~~~~~vg~~~~~~~~~~  399 (403)
T cd06361         340 PWELLGQLKNVTFEDGGNMYHFDANGDLNLGYDVVLWKEDNGHMTVTIMAEYDPQNDVFI  399 (403)
T ss_pred             HHHHHHHHheeEEecCCceEEECCCCCCCcceEEEEeEecCCcEEEEEEEEEeCCCCEEe
Confidence            6799999999999999779999999999899999999953    3899999998765443

This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.

>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily

Probab=98.20  E-value=4.7e-06  Score=84.66  Aligned_cols=112  Identities=19%  Similarity=0.184  Sum_probs=85.1

Q ss_pred             HHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhcccc------------------EEEEeeccccee
Q psy8319         168 EPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQ------------------KLMLLAGCSTVC  229 (330)
Q Consensus       168 ~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~------------------ri~~i~~cs~~~  229 (330)
                      ..++++|+|+||++..++++++|.+.++|+.+++..+...+...+..+..                  ..++++.||..+
T Consensus        52 ~~am~~AieeIN~~~~lLp~i~Lg~~i~Dtc~~~~~a~~~a~~li~~~~~~~~~~~~~c~~~~~~~~v~aVIG~~sS~~s  131 (510)
T cd06364          52 LQAMIFAIEEINNSPTLLPNITLGYRIFDTCNTVSKALEATLSFVAQNKIDSLNLDEFCNCSEHIPSTIAVVGATGSGVS  131 (510)
T ss_pred             HHHHHHHHHHHhCCCccCCCCEEeEEEEccCCchHHHHHHHHHHHhcccccccccccccccCCCCCceEEEECCCchhHH
Confidence            57889999999999999999999999999988888888887776643211                  133448888887


Q ss_pred             eehhhhhhcccceee------------cccCceEEeeeh----hHHHHHHHHHhcceEeecceecc
Q psy8319         230 TTVAEAAKMWNLVVK------------KVEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       230 ~~va~~~~~w~~~~~------------~~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      ..++.....+++|+.            ..+|+++++..+    +.++++++.+++|+.++.++.+.
T Consensus       132 ~ava~~~~~~~IP~IS~~sss~~ls~~~~yp~ffRt~psd~~q~~Ai~~l~~~f~wk~VaiI~~dd  197 (510)
T cd06364         132 TAVANLLGLFYIPQVSYASSSRLLSNKNQFKSFLRTIPNDEHQATAMADIIEYFRWNWVGTIAADD  197 (510)
T ss_pred             HHHHHHhccccccccccccCCcccCCccccCCeeEcCCChHHHHHHHHHHHHHcCCeEEEEEEecC
Confidence            777888888888873            234554443333    36788999999999999986643

Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci

>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor

Probab=98.20  E-value=2.1e-06  Score=86.03  Aligned_cols=49  Identities=24%  Similarity=0.455  Sum_probs=43.5

Q ss_pred             HHHHH-HHHhcceEE-----eeee-eEEEccCCCcceeEEEEEee--CC----cEEEEEEEE
Q psy8319          22 ADDIY-AAINSTQFT-----GVSG-DVAFSSQGDRIALTQIEQVI--NG----SYTKLGFYD   70 (330)
Q Consensus        22 ~~~l~-~~l~~vsF~-----GisG-~V~Fd~nGdr~~~y~I~q~q--~~----~~v~VG~y~   70 (330)
                      .++|+ ++|+||+|.     |.+| +|.||+|||+.+.|||+|||  ++    .+++||.|+
T Consensus       392 ~~~l~~~~L~~v~F~~~~~~~~~g~~v~Fd~nGd~~~~YdI~n~q~~~~~~~~~~~~VG~w~  453 (458)
T cd06375         392 GKKLYKEYLLNVSFTAPFRPDLADSEVKFDSQGDGLGRYNIFNYQRTGNSYGYRYVGVGAWA  453 (458)
T ss_pred             HHHHHHHHHHhccccccccCCCCCCeeEECCCCCCCcceEEEEEEEcCCCCcEEEEEEEEEe
Confidence            56888 599999999     9999 79999999999999999999  22    378999996

Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes

>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor

Probab=98.17  E-value=3.1e-06  Score=82.94  Aligned_cols=56  Identities=20%  Similarity=0.329  Sum_probs=47.7

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEE---EEeeCCcEEEEEEEECCCCcee
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQI---EQVINGSYTKLGFYDTQADNLT   77 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I---~q~q~~~~v~VG~y~~~~~~l~   77 (330)
                      +..+.++|++++|+|++|+|.||++|||...|.+   .|+++|+++.||+|+..++++.
T Consensus       339 g~~i~~~l~~~~f~GvtG~v~fd~~G~r~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~  397 (399)
T cd06384         339 GLNITRKMQDRRFWGVTGLVSIDKNNDRDIDFDLWAMTDHETGKYEVVAHYNGITKQIV  397 (399)
T ss_pred             cHhHHHHHhCceeecceeEEEECCCCCcccceEEEEeecCCCCeEEEEEEEcCCCcEEe
Confidence            3468899999999999999999999999988877   4667899999999987655443

Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.

>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor

Probab=98.15  E-value=2.4e-06  Score=82.95  Aligned_cols=58  Identities=24%  Similarity=0.424  Sum_probs=51.5

Q ss_pred             ecCChHHHHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEeeCCcEEEEEEEECC
Q psy8319          15 TYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVINGSYTKLGFYDTQ   72 (330)
Q Consensus        15 ~y~~~~~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q~~~~v~VG~y~~~   72 (330)
                      +|+..+.++.+.++|++++|.|+||+++||++|||. ..++|+|++++..++||.|++.
T Consensus       320 ~~~~~~~g~~i~~~l~~~~~~G~tG~i~Fd~~G~~~~~~~~i~~~~~~~~~~vg~w~~~  378 (382)
T cd06380         320 PAVPWEHGIDIERALKKVQFEGLTGNVQFDEFGQRTNYTLDVVELKTRGLRKVGYWNED  378 (382)
T ss_pred             CCCCccchHHHHHHHHhcccCCcccceEECCCCCcccccEEEEEecCCCceEEEEECCC
Confidence            566667789999999999999999999999999987 4699999998789999999854

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita

>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor

Probab=98.09  E-value=4.5e-06  Score=81.24  Aligned_cols=53  Identities=23%  Similarity=0.518  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHhcceEEeeeeeEEEccCCCcce-eEEEEEeeCCcEEEEEEEECC
Q psy8319          20 EIADDIYAAINSTQFTGVSGDVAFSSQGDRIA-LTQIEQVINGSYTKLGFYDTQ   72 (330)
Q Consensus        20 ~~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~-~y~I~q~q~~~~v~VG~y~~~   72 (330)
                      ..+..|+++|++++|+|+||+|+||++|+|.. .++|++.++..+++||.|++.
T Consensus       307 ~~G~~l~~~i~~~~f~GlTG~i~F~~~G~r~~~~~~I~~~~~~g~~~vG~W~~~  360 (364)
T cd06390         307 GQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNED  360 (364)
T ss_pred             ccHHHHHHHHHhhcccccccceeeCCCCCcccceEEEEEecCCcceEEEEECCC
Confidence            35789999999999999999999999999864 689999987679999999854

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor

Probab=98.06  E-value=5.1e-06  Score=80.89  Aligned_cols=52  Identities=21%  Similarity=0.473  Sum_probs=47.3

Q ss_pred             HHHHHHHHHhcceEEeeeeeEEEccCCCcce-eEEEEEeeCCcEEEEEEEECC
Q psy8319          21 IADDIYAAINSTQFTGVSGDVAFSSQGDRIA-LTQIEQVINGSYTKLGFYDTQ   72 (330)
Q Consensus        21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~-~y~I~q~q~~~~v~VG~y~~~   72 (330)
                      -+..|.++|++++|.|+||+++||++|+|.. .++|++++.+..++||.|++.
T Consensus       313 ~G~~i~~~l~~~~~~GlTG~i~Fd~~G~r~~~~~~ii~l~~~g~~kvG~W~~~  365 (370)
T cd06389         313 QGVEIERALKQVQVEGLTGNIKFDQNGKRINYTINVMELKSNGPRKIGYWSEV  365 (370)
T ss_pred             CcHHHHHHHHhcccCccccceEeCCCCccccceEEEEEecCCcceEEEEEcCC
Confidence            4578999999999999999999999999987 899999997778999999854

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors

Probab=98.02  E-value=1.6e-05  Score=75.42  Aligned_cols=114  Identities=12%  Similarity=0.136  Sum_probs=85.3

Q ss_pred             ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCC-cCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhcccce
Q psy8319         164 PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSE-CEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLV  242 (330)
Q Consensus       164 ~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~-c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~  242 (330)
                      +..+.-+.++|+|+||++..++.|.+|++...|++ |++..+...+-..+- +....++++.||..+..++..+..+++|
T Consensus        11 g~~~~~a~~lAv~~iN~~ggil~g~~l~~~~~d~~~~~~~~a~~~~~~li~-~~V~aiiG~~~S~~~~av~~~~~~~~vP   89 (327)
T cd06382          11 DSGEELAFRYAIDRINREKELLANTTLEYDIKRVKPDDSFETTKKVCDLLQ-QGVAAIFGPSSSEASSIVQSICDAKEIP   89 (327)
T ss_pred             chHHHHHHHHHHHHhcccccccCCceEEEEEEEecCCCcHHHHHHhhhhhh-cCcEEEECCCChhHHHHHHHHHhccCCC
Confidence            45667899999999999999888999999999999 888887777655553 3333344588887777777788888887


Q ss_pred             eec---------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319         243 VKK---------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       243 ~~~---------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      ...         .+++. +++.+     +..+++++..+.|+.++.++.+.
T Consensus        90 ~Is~~~~~~~~~~~~~~-fr~~p~~~~~~~a~~~~~~~~~w~~vavl~~~~  139 (327)
T cd06382          90 HIQTRWDPEPKSNRQFT-INLYPSNADLSRAYADIVKSFNWKSFTIIYESA  139 (327)
T ss_pred             ceeccCCcCccccccce-EEeCCCHHHHHHHHHHHHHhcCCcEEEEEecCh
Confidence            632         12343 34333     35678888899999999998765

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri

>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C

Probab=97.99  E-value=1.6e-05  Score=76.82  Aligned_cols=53  Identities=19%  Similarity=0.253  Sum_probs=45.3

Q ss_pred             HHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEee--CCcEEEEEEEECCCCc
Q psy8319          23 DDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVI--NGSYTKLGFYDTQADN   75 (330)
Q Consensus        23 ~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q--~~~~v~VG~y~~~~~~   75 (330)
                      ..+.+.|+|.+|+|++|+|++|+||||.++|.+.-..  .+++..||.|++..++
T Consensus       314 ~~I~~~m~NrTF~GitG~V~IDeNGDRd~dfsLl~ms~~tg~y~vV~~y~t~~n~  368 (380)
T cd06369         314 FSFINEFRNISFEGAGGPYTLDEYGDRDVNFTLLYTSTDTSKYKVLFEFDTSTNK  368 (380)
T ss_pred             HHHHHHHhCcceecCCCceEeCCCCCccCceEEEEeeCCCCCeEEEEEEECCCCe
Confidence            3456678999999999999999999999999998765  4689999999976543

Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.

>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor

Probab=97.99  E-value=1.4e-05  Score=78.17  Aligned_cols=56  Identities=21%  Similarity=0.437  Sum_probs=48.7

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEeeC---CcEEEEEEEECCCCcee
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVIN---GSYTKLGFYDTQADNLT   77 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~---~~~v~VG~y~~~~~~l~   77 (330)
                      ++.|.+.|++++|+|+||+|.||++|||...|.+..+++   +.++.||.|..+.+++.
T Consensus       326 g~~l~~~l~~~~f~G~tG~v~~d~~g~r~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  384 (387)
T cd06386         326 GTKITQRMWNRTFEGIAGQVSIDANGDRYGDFSVIAMTDVEAGTYEVVGNYFGKNGRFE  384 (387)
T ss_pred             HHHHHHHHhCCceeeccccEEECCCCCccccEEEEEccCCCCccEEEEeEEccccceEE
Confidence            678889999999999999999999999999999999974   57999999986544443

Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.

>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family

Probab=97.93  E-value=1e-05  Score=79.00  Aligned_cols=55  Identities=18%  Similarity=0.410  Sum_probs=47.1

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEe---eCCcEEEEEEEECCCCce
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQV---INGSYTKLGFYDTQADNL   76 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~---q~~~~v~VG~y~~~~~~l   76 (330)
                      ++.+.+.|++++|+|++|++.||++|||...|.+.++   ++|+++.||.|+..++++
T Consensus       336 ~~~i~~~l~~~~f~G~tG~v~fd~~G~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~  393 (396)
T cd06373         336 GTNITRRMWNRTFEGITGNVSIDENGDRESDFSLWDMTDTETGTFEVVANYNGSNKTI  393 (396)
T ss_pred             hHHHHHHhcCCceecccCceEeecCCcccceeeeeeccCCCCceEEEEeeccccccce
Confidence            4678889999999999999999999999999988655   578999999998755443

Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli

>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor

Probab=97.93  E-value=3.4e-05  Score=75.89  Aligned_cols=114  Identities=23%  Similarity=0.250  Sum_probs=83.1

Q ss_pred             cchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhc---------------cccEEEEeeccccee
Q psy8319         165 FACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYN---------------NPQKLMLLAGCSTVC  229 (330)
Q Consensus       165 ~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~---------------k~~ri~~i~~cs~~~  229 (330)
                      .....++++|+|+||++..+++|++++++..|+ |++..+...+...+..               +.....++|.||..+
T Consensus        42 ~~~~~a~~lAv~~IN~~ggil~g~~l~~~~~D~-~~~~~a~~~~~~li~~~~~~~~~~c~~~~~~~~V~aIiGp~~S~~~  120 (410)
T cd06363          42 YRLFQAMRFAVEEINNSTSLLPGVTLGYEIFDH-CSDSANFPPTLSLLSVNGSRIEPQCNYTNYQPRVVAVIGPDSSTLA  120 (410)
T ss_pred             HHHHHHHHHHHHHHhCCCccCCCCeeceEEEec-CCcHHHHHHHHHHHhccCcccCcccccccCCCCeEEEECCCccHHH
Confidence            344678999999999999999999999999998 7777777776665532               233334458888887


Q ss_pred             eehhhhhhcccceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecceecc
Q psy8319         230 TTVAEAAKMWNLVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       230 ~~va~~~~~w~~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      ..++..+..|++|...            .+|+.++....    ..++++++..+.|++++.++.+.
T Consensus       121 ~av~~i~~~~~vp~is~~~~~~~lt~~~~~~~~fr~~~~~~~~~~al~~~l~~~~~k~vaii~~~~  186 (410)
T cd06363         121 LTVAPLFSFFLIPQISYGASSEVLSNKELYPSFLRTVPSDKDQIEAMVQLLQEFGWNWVAFLGSDD  186 (410)
T ss_pred             HHHHHHhcccccccccccccCccccccccCCCeeEecCCcHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence            7777788888887621            23454433333    36788889999999999997643

Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.

>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor

Probab=97.90  E-value=1.3e-05  Score=78.26  Aligned_cols=53  Identities=15%  Similarity=0.424  Sum_probs=47.2

Q ss_pred             HHHHHHHHHhcceEEeeeeeEEEccCCCcce-eEEEEEeeCCcEEEEEEEECCC
Q psy8319          21 IADDIYAAINSTQFTGVSGDVAFSSQGDRIA-LTQIEQVINGSYTKLGFYDTQA   73 (330)
Q Consensus        21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~-~y~I~q~q~~~~v~VG~y~~~~   73 (330)
                      .+..|.++|++++|.|+||+++||++|+|.. .++|++.+.+..++||+|++..
T Consensus       314 ~G~~i~~~lk~~~~~GlTG~i~Fd~~G~r~~~~l~Ii~l~~~g~~kvG~W~~~~  367 (371)
T cd06388         314 QGIDMERTLKQVRIQGLTGNIQFDHYGRRVNYTMDVFELKSNGPRKIGYWNDMD  367 (371)
T ss_pred             ccHHHHHHHHhcCcCCCccceeECCCCCcccceEEEEEccCCCceEEEEEcCCC
Confidence            3578999999999999999999999999987 8999999866789999998643

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family

Probab=97.89  E-value=5.1e-05  Score=74.82  Aligned_cols=121  Identities=15%  Similarity=0.196  Sum_probs=85.1

Q ss_pred             hhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEE--EeecCCcCCchhHHHHHHhhhccccEEEEee-cccc
Q psy8319         151 VGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQL--HWNDSECEPGLGASVMYNLLYNNPQKLMLLA-GCST  227 (330)
Q Consensus       151 iG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l--~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~-~cs~  227 (330)
                      +|+++...+..     -..+.++|+++||++..++++++|++  .+.|+ |++..+...+.+.+. +....+++| +|+.
T Consensus         2 IGaif~~~s~~-----~~~Af~~Ai~~iN~~~~~l~~~~l~~~~~~~d~-~d~f~a~~~~c~l~~-~gv~ai~Gp~~~~~   74 (400)
T cd06391           2 IGAIFDESAKK-----DDEVFRMAVADLNQNNEILQTEKITVSVTFVDG-NNPFQAVQEACELMN-QGILALVSSIGCTS   74 (400)
T ss_pred             cceeeccCCch-----HHHHHHHHHHHhcCCccccCCCcceEEEEEeeC-CCcHHHHHHHHHHHh-CCeEEEECCCcchH
Confidence            56777665532     24699999999999999999995555  89999 699999999999994 444455666 6765


Q ss_pred             eeeehhhhhhcccceeec----------------------ccCceEEeee-hhHHHHHHHHHhcceEeecceecc
Q psy8319         228 VCTTVAEAAKMWNLVVKK----------------------VEPWKLYTMV-TGLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       228 ~~~~va~~~~~w~~~~~~----------------------~~~~~l~~~v-~~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      . ..+++.+..|++|...                      .++++++... -..++++++.++.|+.+..++...
T Consensus        75 ~-~~v~~~~~~~~vP~i~~~~~~~~t~~~~~~~~~~~~~~~y~~~~rp~~~~~~ai~~li~~f~W~~v~i~~d~~  148 (400)
T cd06391          75 A-GSLQSLADAMHIPHLFIQRSTAGTPRSSCGLTRSNRNDDYTLSVRPPVYLNDVILRVVTEYAWQKFIIFYDTD  148 (400)
T ss_pred             H-HHHHHHhccCcCCeEEeecccccCccccCCCCCCCCcccceEEecChHHHHHHHHHHHHHcCCcEEEEEEeCC
Confidence            5 4556677777666442                      1222222110 147889999999999998776543

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a

>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family

Probab=97.84  E-value=2.5e-05  Score=77.01  Aligned_cols=52  Identities=17%  Similarity=0.316  Sum_probs=45.7

Q ss_pred             HHHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEee-----CCcEEEEEEEECC
Q psy8319          21 IADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVI-----NGSYTKLGFYDTQ   72 (330)
Q Consensus        21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q-----~~~~v~VG~y~~~   72 (330)
                      .+..|+++|++++|+|+||+|+||++|.|. ..++|++.+     +..+++||+|++.
T Consensus       338 ~G~~ll~~i~~~~f~GlTG~i~f~~~g~r~~~~~dIin~~~~~~~~~g~rkiG~Ws~~  395 (400)
T cd06391         338 GGRSMLETIKKGGVSGLTGELEFNENGGNPNVHFEILGTNYGEDLGRGVRKLGCWNPI  395 (400)
T ss_pred             ChHHHHHHHHhcCcccceeceEECCCCCccCCceEEEEeeccccCCCcceEEEEEcCC
Confidence            478999999999999999999999999885 479999986     4468999999864

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a

>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=97.84  E-value=7.4e-05  Score=70.46  Aligned_cols=127  Identities=18%  Similarity=0.184  Sum_probs=91.7

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      +|.+.++++..- .+..+.-+.++|+|+||++-.+ .|.++++++.|++|++..+...+-..+.......++++.||..+
T Consensus         2 IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi-~G~~iel~~~D~~~~p~~a~~~a~~li~~~~v~~viG~~~s~~~   80 (312)
T cd06346           2 IGILLPLTGDLASYGPPMADAAELAVKEVNAAGGV-LGEPVTLVTADTQTDPAAGVAAATKLVNVDGVPGIVGAACSGVT   80 (312)
T ss_pred             ceeeccCCCchhhcChhHHHHHHHHHHHHHHhCCC-CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCEEEccccchhh
Confidence            577777777554 2556778899999999998776 79999999999999999999888887766344445567777776


Q ss_pred             eeh-hhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319         230 TTV-AEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       230 ~~v-a~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      ..+ +......++|...            .+++ ++++.+     ...+++.+....|++++.++...
T Consensus        81 ~a~~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~-~fr~~~~~~~~~~~l~~~~~~~~~~~vail~~~~  147 (312)
T cd06346          81 IAALTSVAVPNGVVMISPSSTSPTLTTLDDNGL-FFRTAPSDALQGQALAQLAAERGYKSVATTYINN  147 (312)
T ss_pred             HhhhhhhhccCCcEEEecCCCCccceecCCCce-EEEecCCcHHHHHHHHHHHHHcCCCeEEEEEccC
Confidence            655 5566666666521            1334 444443     24567788888899999987643

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor

Probab=97.76  E-value=3.2e-05  Score=75.58  Aligned_cols=53  Identities=21%  Similarity=0.387  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEeeCCcEEEEEEEECC
Q psy8319          20 EIADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVINGSYTKLGFYDTQ   72 (330)
Q Consensus        20 ~~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q~~~~v~VG~y~~~   72 (330)
                      ..+..|+++|++++|.|+||+++||++|.|. ..++|++..+...++||.|++.
T Consensus       315 ~~G~~l~~~ik~v~~~GLTG~i~F~~~G~R~~~~ldIinl~~~g~~kIG~W~~~  368 (372)
T cd06387         315 SQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKPSGSRKAGYWNEY  368 (372)
T ss_pred             cchHHHHHHHHhcccCCCccceeeCCCCCcccceEEEEEecCCCceeEEEECCC
Confidence            4578999999999999999999999999985 5799999986678999999854

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor

Probab=97.76  E-value=8.8e-05  Score=71.99  Aligned_cols=123  Identities=13%  Similarity=0.075  Sum_probs=89.7

Q ss_pred             hhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCC-cCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSE-CEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~-c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      +|+++...     +.....+.++|+++||++...+..++|.+.+.+.. |++..+...+.+.+- +.....++|.||..+
T Consensus         2 iG~if~~~-----~~~~~~a~~~Av~~iN~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~c~ll~-~~V~aiiGp~~s~~~   75 (382)
T cd06380           2 IGGLFDVD-----EDQEYSAFRFAISQHNTNPNSTAPFKLLPHVDNLDTSDSFALTNAICSQLS-RGVFAIFGSYDKSSV   75 (382)
T ss_pred             ceeEECCC-----ChHHHHHHHHHHHHhcccccccCCeeeeeeeeEecccchHHHHHHHHHHHh-cCcEEEEecCcHHHH
Confidence            45555544     24567899999999999887888999999888887 789998888888884 434444568888777


Q ss_pred             eehhhhhhcccceee----------cccCceEEeeeh--hHHHHHHHHHhcceEeecceeccc
Q psy8319         230 TTVAEAAKMWNLVVK----------KVEPWKLYTMVT--GLLSIDLVILLCWQFYDPLQRITE  280 (330)
Q Consensus       230 ~~va~~~~~w~~~~~----------~~~~~~l~~~v~--~~~~v~li~~~~W~~v~~~~~~~~  280 (330)
                      ..++..+..+++|..          ..+++ ++++.+  ..++++++.+++|+.++.++....
T Consensus        76 ~~~~~~~~~~~iP~i~~~~~~~~l~~~~~~-~fr~~p~~~~a~~~~~~~~~wk~vaii~~~~~  137 (382)
T cd06380          76 NTLTSYSDALHVPFITPSFPTNDLDDGNQF-VLQMRPSLIQALVDLIEHYGWRKVVYLYDSDR  137 (382)
T ss_pred             HHHHHHHhcCCCCeEecCCCcccCCCCCcE-EEEeccchhHHHHHHHHhcCCeEEEEEECCCc
Confidence            777777788888763          12334 333333  346678889999999999987543

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita

>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors

Probab=97.74  E-value=0.0001  Score=67.35  Aligned_cols=113  Identities=21%  Similarity=0.201  Sum_probs=85.4

Q ss_pred             cchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhc----cccEEEEeecccceeeehhhhhhccc
Q psy8319         165 FACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYN----NPQKLMLLAGCSTVCTTVAEAAKMWN  240 (330)
Q Consensus       165 ~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~----k~~ri~~i~~cs~~~~~va~~~~~w~  240 (330)
                      ..+......|++.+|++   +.|+++++...|+.|++..+.......+..    +....++++.|+.....++.....++
T Consensus        19 ~~~~~~~~~~~~~~n~~---~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~aiiG~~~s~~~~~v~~~~~~~~   95 (298)
T cd06269          19 AFRAAAALFAVEEINND---LPNTTLGYEIYDSCCSPSDAFSAALDLCSLLEKSRGVVAVIGPSSSSSAEAVASLLGALH   95 (298)
T ss_pred             HHHHHHHHHHHHHHhcc---CCCCeeeeEEEecCCChHHHHHHHHHHHhcCCCCCceEEEECCCCchHHHHHHHHhccCC
Confidence            45566778888889887   889999999999999999998888877754    33333445888777777778888888


Q ss_pred             ceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecceeccc
Q psy8319         241 LVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRITE  280 (330)
Q Consensus       241 ~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~~  280 (330)
                      +|...            .+|+.++....    ..++++++.+++|+.++.++.+..
T Consensus        96 iP~is~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~l~~~~w~~v~~v~~~~~  151 (298)
T cd06269          96 IPQISYSATSPLLSDKEQFPSFLRTVPSDSSQAQAIVDLLKHFGWTWVGLVYSDDD  151 (298)
T ss_pred             CcEEecccCchhhcChhhCCCeEecCCCcHHHHHHHHHHHHHCCCeEEEEEEecch
Confidence            88732            34554443333    468899999999999999987654

This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va

>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family

Probab=97.73  E-value=3.6e-05  Score=75.87  Aligned_cols=52  Identities=17%  Similarity=0.298  Sum_probs=44.6

Q ss_pred             HHHHHHHHHhcceEEeeeeeEEEccCCCcce-eEEEEEee-----CCcEEEEEEEECC
Q psy8319          21 IADDIYAAINSTQFTGVSGDVAFSSQGDRIA-LTQIEQVI-----NGSYTKLGFYDTQ   72 (330)
Q Consensus        21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~-~y~I~q~q-----~~~~v~VG~y~~~   72 (330)
                      -+..|+++|++++|+|+||+|+||++|.|.. .++|.+++     +..+++||+|++.
T Consensus       338 ~G~~ll~~ik~v~f~GLTG~I~F~~~G~r~~~~ldIi~l~~~~~~g~g~~~iG~W~~~  395 (400)
T cd06392         338 GGRSMLETIKKGHITGLTGVMEFKEDGANPHVQFEILGTSYSETFGKDVRRLATWDSE  395 (400)
T ss_pred             ChHHHHHHHHhCCCccCccceeECCCCCCcCCceEEEeccccccCCCCceEeEEecCC
Confidence            3679999999999999999999999998864 68999976     2248999999864

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel

>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases

Probab=97.71  E-value=2.7e-05  Score=76.49  Aligned_cols=40  Identities=15%  Similarity=0.223  Sum_probs=36.6

Q ss_pred             HHHHHHHHhcceEEeeee-eEEEccCCCcceeEEEEEeeCC
Q psy8319          22 ADDIYAAINSTQFTGVSG-DVAFSSQGDRIALTQIEQVING   61 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG-~V~Fd~nGdr~~~y~I~q~q~~   61 (330)
                      ++++.++|++++|.|+|| +|.||++|||.+.|.+.++|+|
T Consensus       344 g~~i~~~l~~~~f~GvtG~~v~fd~~G~~~~~y~v~~~~~~  384 (404)
T cd06370         344 GTAIVSHILNRTYRSITGFDMYIDENGDAEGNYSVLALQPI  384 (404)
T ss_pred             HHHHHHHHhCcccccccCceEEEcCCCCcccceEEEEeccc
Confidence            457889999999999999 8999999999999999999865

Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.

>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor

Probab=97.66  E-value=0.00017  Score=70.33  Aligned_cols=130  Identities=14%  Similarity=0.058  Sum_probs=88.8

Q ss_pred             hhhhhhhhccc-ccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCc-CCchhHHHHHHhhhccccEEEEeecc
Q psy8319         149 MLVGIAFCMSL-NFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSEC-EPGLGASVMYNLLYNNPQKLMLLAGC  225 (330)
Q Consensus       149 iliG~ll~~~~-~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c-~~~~~~t~~~~~l~~k~~ri~~i~~c  225 (330)
                      +.||++++..+ .-- .+..-..+.++|+|+||++..+++++.|.+..++..| ++..+...+.+.+ .+....+++|.|
T Consensus         3 i~IG~i~~~~tg~~~~~g~~~~~a~~~Av~~IN~~~~il~~~~l~~~~~~~~~~d~~~~~~~~~~~l-~~~V~AiiGp~~   81 (384)
T cd06393           3 IRIGGIFEYLDGPNNQVMSAEELAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSFEATKKACDQL-ALGVVAIFGPSQ   81 (384)
T ss_pred             eeEEEeecCCcccccccCcHHHHHHHHHHHHhcCCCccCCCceEEEEEEecccccchhHHHHhhccc-ccCcEEEECCCC
Confidence            45677766322 211 1233467899999999999999999999999998775 5534444444444 233334455888


Q ss_pred             cceeeehhhhhhcccceeec---------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319         226 STVCTTVAEAAKMWNLVVKK---------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       226 s~~~~~va~~~~~w~~~~~~---------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      |..+..++..+..+++|...         ..+++++++.+     ..++++++.++.|+.++.++.+.
T Consensus        82 S~~~~av~~i~~~~~iP~Is~~~t~~~lt~~~~~~~~~~~~~~~~~~a~~~~~~~~~wk~vaily~~~  149 (384)
T cd06393          82 GSCTNAVQSICNALEVPHIQLRWKHHPLDNKDTFYVNLYPDYASLSHAILDLVQYLKWRSATVVYDDS  149 (384)
T ss_pred             hHHHHHHHHHHhccCCCeEeccCCCcccCccceeEEEeccCHHHHHHHHHHHHHHcCCcEEEEEEeCc
Confidence            88888888888899988732         12333444433     35667889999999999998744

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated

>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors

Probab=97.58  E-value=0.00022  Score=67.19  Aligned_cols=123  Identities=14%  Similarity=0.149  Sum_probs=87.4

Q ss_pred             hhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecC-CcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDS-ECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds-~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      +|++++..+     .....+.++|+|+||++..++.++++.+...|+ ++++..+...+-..+. +.....+++.||..+
T Consensus         2 iG~i~~~~~-----~~~~~a~~lAv~~iN~~ggil~~~~l~~~~~d~~~~~~~~a~~~a~~li~-~~V~aiiG~~~S~~~   75 (324)
T cd06368           2 IGAIFDEDA-----RQEELAFRFAIDRINTNEEILAKFTLVPDIDELNTNDSFELTNKACDLLS-QGVAAIFGPSSSSSA   75 (324)
T ss_pred             EEEEeCCCC-----hHHHHHHHHHHHHhcccccccCCceeeeEEEEecCCChHHHHHHHHHHHh-cCcEEEECCCCHHHH
Confidence            455555544     356788999999999998888888999999987 6999888777766554 444445568888777


Q ss_pred             eehhhhhhcccceeec-------c-cCceE-Eeee---hhHHHHHHHHHhcceEeecceecc
Q psy8319         230 TTVAEAAKMWNLVVKK-------V-EPWKL-YTMV---TGLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       230 ~~va~~~~~w~~~~~~-------~-~~~~l-~~~v---~~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      ..++..+..+++|...       . .++.+ ++..   .+..+++++.+++|+.++.++...
T Consensus        76 ~av~~i~~~~~ip~is~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~w~~vaii~~~~  137 (324)
T cd06368          76 NTVQSICDALEIPHITTSWSPNPKPRQFTINLYPSMRDLSDALLDLIKYFGWRKFVYIYDSD  137 (324)
T ss_pred             HHHHHHHhccCCCcEEecCCcCCCCCcceEEecCCHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            7777788888887632       1 11211 1111   135678899999999999998643

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors

>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor

Probab=97.57  E-value=0.00029  Score=67.81  Aligned_cols=128  Identities=10%  Similarity=0.032  Sum_probs=85.4

Q ss_pred             hhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce-e
Q psy8319         151 VGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV-C  229 (330)
Q Consensus       151 iG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~-~  229 (330)
                      +|+++...+..  +.....+.+||+|++|++...+.+.+|+++..|.+-++....+.....++.+-....++|..|.. .
T Consensus         2 iG~i~d~~s~~--G~~~~~a~~lAv~~iN~~~~~~~~~~l~~~~~d~~~d~~f~~~~~~~~~l~~gV~AIiGp~ss~~~~   79 (333)
T cd06394           2 IAAILDDPMEC--GRGERLALALARERINRAPERLGKARVEVDIFELLRDSQYETTDTMCQILPKGVVSVLGPSSSPASS   79 (333)
T ss_pred             ceeeecCCccc--cHHHHHHHHHHHHHhccCccccCCceeEEEEeeccccChHHHHHHHHHHHhcCeEEEECCCCchHHH
Confidence            57777776644  45678899999999998877777789999999999988644444444444554443445655533 2


Q ss_pred             eehhhhhhcccceeeccc-------CceEE---eeeh-----hHHHHHHHHHhcceEeecceeccc
Q psy8319         230 TTVAEAAKMWNLVVKKVE-------PWKLY---TMVT-----GLLSIDLVILLCWQFYDPLQRITE  280 (330)
Q Consensus       230 ~~va~~~~~w~~~~~~~~-------~~~l~---~~v~-----~~~~v~li~~~~W~~v~~~~~~~~  280 (330)
                      ..++..+...++|.....       ++..+   .+-+     ..++++++.+++|+.+..+|++.+
T Consensus        80 ~~v~~i~~~~~VP~Is~~~~~~~~~~~~~~~~i~l~P~~~~~~~Ai~dli~~~~W~~v~~iYe~d~  145 (333)
T cd06394          80 SIVSHICGEKEIPHFKVGPEETPKLQYLRFASVNLHPSNEDISVAVAGILNSFNYPTASLICAKAE  145 (333)
T ss_pred             HHHHHHhhccCCceEEeccccCcccccccceEEEecCCHHHHHHHHHHHHHhcCCCEEEEEEeCcH
Confidence            345555555555553321       12211   2212     468899999999999999998664

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act

>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family

Probab=97.52  E-value=0.00017  Score=70.22  Aligned_cols=61  Identities=11%  Similarity=0.256  Sum_probs=50.3

Q ss_pred             HHHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEeeC-CcEEEEEEEECCCCceeecCccccCC
Q psy8319          21 IADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVIN-GSYTKLGFYDTQADNLTWFDRERWIG   86 (330)
Q Consensus        21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q~-~~~v~VG~y~~~~~~l~~~~~i~W~~   86 (330)
                      -++.|+++|++++|+|.  +++||++|+|. ..++|++++. ..+++||.|+  ++.|++. ...||+
T Consensus       300 ~G~~l~~~l~~v~~~G~--~i~F~~~G~r~~~~ldIinl~~~~g~~kVG~W~--~~~L~~~-~~~wp~  362 (362)
T cd06378         300 PPNTLHRYMMNVTWEGR--DLSFTEDGYLVNPKLVVISLNKERVWEEVGKWE--NGSLRLK-YPVWPR  362 (362)
T ss_pred             chHHHHHHhhcceECCC--ceeECCCCeEccceEEEEEecCCCCceEEEEEc--CCeEEEe-cCCCCC
Confidence            47799999999999996  99999999986 4699999985 3689999998  3567774 347864

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in

>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=97.51  E-value=0.00037  Score=66.29  Aligned_cols=129  Identities=16%  Similarity=0.156  Sum_probs=92.2

Q ss_pred             hhhhhhccccccc-ccchHHHHHHHHHhhhcCCCC---CCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccc
Q psy8319         151 VGIAFCMSLNFNL-PFACEPAAKLALEDVNNATDL---LPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCS  226 (330)
Q Consensus       151 iG~ll~~~~~~~~-~~~c~~~~~~A~~~iN~~~~l---l~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs  226 (330)
                      +|.+.++++..-. +..+..++++|+++||++-.+   ..|++++++..|++|++..+...+-..+..+....++++.||
T Consensus         2 IG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~ggi~~g~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviG~~~s   81 (345)
T cd06338           2 IGASLSLTGPLAGGGQLTQRGYELWVEDVNAAGGIKGGGKGYPVELIYYDDQSNPARAARAYERLITQDKVDFLLGPYSS   81 (345)
T ss_pred             eeEEEeCCCccccccHHHHHHHHHHHHHHHhcCCcccCCCCceEEEEEecCCCCHHHHHHHHHHHHhhcCccEEecCCcc
Confidence            5777788776542 566788999999999987544   258999999999999999999888777765455555567777


Q ss_pred             ceeeehhhhhhcccceeec-----------ccCceEEeeeh----hHHHHHHHHHhc--ceEeecceecc
Q psy8319         227 TVCTTVAEAAKMWNLVVKK-----------VEPWKLYTMVT----GLLSIDLVILLC--WQFYDPLQRIT  279 (330)
Q Consensus       227 ~~~~~va~~~~~w~~~~~~-----------~~~~~l~~~v~----~~~~v~li~~~~--W~~v~~~~~~~  279 (330)
                      ..+..+++.....++|...           .+++.++....    ...+++.+....  |.+++.++...
T Consensus        82 ~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~  151 (345)
T cd06338          82 GLTLAAAPVAEKYGVPMVAGSGASDSIFAQGFKYVFGTLPPASQYAKSLLEMLVALDPRPKKVAILYADD  151 (345)
T ss_pred             hhHHHHHHHHHHhCCcEEecCCCCchHhhcCCceEEEecCchHHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence            6666666666667766521           23443333332    346677888777  99999997654

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.

>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor

Probab=97.44  E-value=0.00018  Score=70.12  Aligned_cols=51  Identities=20%  Similarity=0.368  Sum_probs=43.7

Q ss_pred             HHHHHHHhcceEEeeeeeEEEcc-CCCc-ceeEEEEEeeCCcEEEEEEEECCC
Q psy8319          23 DDIYAAINSTQFTGVSGDVAFSS-QGDR-IALTQIEQVINGSYTKLGFYDTQA   73 (330)
Q Consensus        23 ~~l~~~l~~vsF~GisG~V~Fd~-nGdr-~~~y~I~q~q~~~~v~VG~y~~~~   73 (330)
                      +.+.++|++++|.|+||+++||+ +|.| ...++|+++.++.+++||.|++..
T Consensus       327 ~~i~~~l~~~~~~GltG~i~Fd~~~g~r~~~~~~i~~~~~~g~~~vg~W~~~~  379 (384)
T cd06393         327 GRFMNFIKEAQWEGLTGRIVFNKTSGLRTDFDLDIISLKEDGLEKVGVWNPNT  379 (384)
T ss_pred             HHHHHHHhheeecccccceEecCCCCeeeeeEEEEEEecCCcceeeEEEcCCC
Confidence            58999999999999999999996 5666 457899999877889999998643

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated

>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors

Probab=97.35  E-value=0.00048  Score=66.78  Aligned_cols=52  Identities=23%  Similarity=0.349  Sum_probs=45.8

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEeeC--CcEEEEEEEECCC
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVIN--GSYTKLGFYDTQA   73 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~--~~~v~VG~y~~~~   73 (330)
                      ++.+.+.|++++|.|++|++.||++|||.+.|+|.++|+  +++..++.++...
T Consensus       330 ~~~v~~~l~~~~f~g~~G~v~fd~~G~~~~~~~v~~~~~~~~~~~~~~~~~~~~  383 (389)
T cd06352         330 GLIITRRMWNRTFSGITGPVTIDENGDREGDYSLLDLDSTGGQLEVVYLYDTSS  383 (389)
T ss_pred             hHHHHHHhcCcEEEeeeeeEEEcCCCCeeeeEEEEEecCCCceEEEEEeccccc
Confidence            456788899999999999999999999999999999994  5789999987543

Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l

>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine)

Probab=97.34  E-value=0.00099  Score=62.81  Aligned_cols=126  Identities=19%  Similarity=0.105  Sum_probs=86.8

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      +|.+.++++..- .+..+..++++|++++|++ ....|++++++..|++|++..+...+-..+.. .....+++.||..+
T Consensus         2 iG~~~p~sG~~~~~g~~~~~g~~~a~~~iN~~-ggi~g~~i~~~~~D~~~~~~~~~~~~~~li~~-~v~aiiG~~~s~~~   79 (334)
T cd06342           2 IGVAGPLTGPNAALGKDIKNGAQLAVEDINAK-GGGKGVKLELVVEDDQADPKQAVAVAQKLVDD-GVVGVVGHLNSGVT   79 (334)
T ss_pred             eeEeccCCCcchhhcHHHHHHHHHHHHHHHhc-CCCCCeEEEEEEecCCCChHHHHHHHHHHHhC-CceEEECCCccHhH
Confidence            567777776543 2566788999999999988 45579999999999999998887666555544 33334447777776


Q ss_pred             eehhhhhhcccceeec-----------ccCceEEeeeh-----hHHHHHHH-HHhcceEeecceecc
Q psy8319         230 TTVAEAAKMWNLVVKK-----------VEPWKLYTMVT-----GLLSIDLV-ILLCWQFYDPLQRIT  279 (330)
Q Consensus       230 ~~va~~~~~w~~~~~~-----------~~~~~l~~~v~-----~~~~v~li-~~~~W~~v~~~~~~~  279 (330)
                      ..+++....+++|...           .+++ .+++.+     ...+++.+ ..+.|.+++.++.+.
T Consensus        80 ~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~  145 (334)
T cd06342          80 IPASPIYADAGIVMISPAATNPKLTERGYKN-VFRVVARDDQQGPAAAKYAVETLKAKKVAIIDDKT  145 (334)
T ss_pred             HHhHHHHHhCCCeEEecCCCCchhhcCCCce-EEeccCCcHHHHHHHHHHHHHhcCCCEEEEEeCCc
Confidence            6667777777777632           1233 344433     23445544 467899999887654

This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.

>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family

Probab=97.32  E-value=0.0009  Score=66.07  Aligned_cols=112  Identities=13%  Similarity=0.080  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHhhhcCCCCCCCceEEEEe-ecCCcCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhcccceeec
Q psy8319         167 CEPAAKLALEDVNNATDLLPGFKLQLHW-NDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKK  245 (330)
Q Consensus       167 c~~~~~~A~~~iN~~~~ll~gf~l~l~~-~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~~  245 (330)
                      -..+.++|++++|++..++.+++|.+.. +++.||+..+...+-+.| .+-....++|..+..+..+++.+...++|..+
T Consensus        13 ~~~af~~Av~~~N~~~~~l~~~~L~~~~~~~~~~d~F~~~~~ac~l~-~~gV~AI~Gp~s~~~a~~v~sic~~l~VP~is   91 (400)
T cd06392          13 DDRVFQLAVSDLSLNDDILQSEKITYSIKSIEANNPFQAVQEACDLM-TQGILALVTSTGCASANALQSLTDAMHIPHLF   91 (400)
T ss_pred             HHHHHHHHHHHhccCccccCCceEEEEEEecCCCChhHHHHHHHHHH-hcCeEEEECCCchhHHHHHHHHhccCcCCcEe
Confidence            3678899999999999999999999987 999999999999998888 44443344565554445556666666666432


Q ss_pred             c----------------------cCceEEee-ehhHHHHHHHHHhcceEeecceecc
Q psy8319         246 V----------------------EPWKLYTM-VTGLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       246 ~----------------------~~~~l~~~-v~~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      .                      ++.+++.. ...-++++++.++.|+++..+|.+.
T Consensus        92 ~~~~~~~~~~~~~~~~p~~~~~~~~~~lrp~~~~~~Ai~dlV~~~~W~~v~~iYD~d  148 (400)
T cd06392          92 VQRNSGGSPRTACHLNPSPEGEEYTLAARPPVRLNDVMLKLVTELRWQKFIVFYDSE  148 (400)
T ss_pred             ecccccccccccccCCCCcCcCceeEEecCchHHHHHHHHHHHhCCCcEEEEEEECc
Confidence            1                      11222222 0356899999999999999999644

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel

>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors

Probab=97.30  E-value=0.0012  Score=63.63  Aligned_cols=122  Identities=11%  Similarity=0.108  Sum_probs=90.0

Q ss_pred             hhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce--
Q psy8319         151 VGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV--  228 (330)
Q Consensus       151 iG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~--  228 (330)
                      +|++++..+       -..+.+.|+..+|.+.....+.++++...|++++|..+.....+.+..+...+++++.||..  
T Consensus         5 ig~~~~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~l~~~d~~~d~~~~~~~~~~~l~~~~v~~iig~~~s~~~~   77 (362)
T cd06367           5 IGVVLSGSS-------SEPAFRDAVTAANFRHNLPYNLSLEAVAVSNDTDPISLLLSVCDLLVVQVVAGVVFSDPTDEEA   77 (362)
T ss_pred             EEEEecCCc-------chhhHHHHhhhccccccCCcccceEEEEEecCCCHHHHHHHHHHHhcccceEEEEecCCCCccc
Confidence            455555542       24677888888887776778999999999999999999888888887665554555777776  


Q ss_pred             -eeehhhhhhcccceeec-------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceeccc
Q psy8319         229 -CTTVAEAAKMWNLVVKK-------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRITE  280 (330)
Q Consensus       229 -~~~va~~~~~w~~~~~~-------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~~  280 (330)
                       +..++..+..+++|+..             .+++ ++++.+     +.++++++.+++|..++.++.+..
T Consensus        78 ~~~~~~~v~~~~~iP~Is~~~~~~~~~s~~~~~~~-~~R~~p~~~~~~~ai~~ll~~~~w~~vaii~~~~~  147 (362)
T cd06367          78 VAQILDFTSAQTRIPVVGISGRESIFMSDKNIHSL-FLQTGPSLEQQADVMLEILEEYDWHQFSVVTSRDP  147 (362)
T ss_pred             hhhhhhhhhhhhcCcEEEeeccccccccCCCcccc-eEeecCcHHHHHHHHHHHHHHcCCeEEEEEEEcCc
Confidence             66667778888888721             2344 344444     467889999999999999988654

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits

>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems

Probab=97.30  E-value=0.0012  Score=60.09  Aligned_cols=128  Identities=20%  Similarity=0.203  Sum_probs=88.1

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      +|.+++..+... .+..+..++++|++++|++. ...|++++++..|++|++..+...+-..+.......++++.|+...
T Consensus         2 IG~i~p~~g~~~~~~~~~~~~~~~a~~~~n~~~-g~~g~~~~~~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~~~~~   80 (299)
T cd04509           2 IGVLFPLSGPYAEYGAFRLAGAQLAVEEINAKG-GIPGRKLELVIYDDQSDPARALAAARRLCQQEGVDALVGPVSSGVA   80 (299)
T ss_pred             eeEEEcCCCcchhcCHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEecCCCCHHHHHHHHHHHhcccCceEEEcCCCcHHH
Confidence            566677765422 34567789999999999886 5789999999999999988877766555544244445557776555


Q ss_pred             eehhhhhhcccceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecceecc
Q psy8319         230 TTVAEAAKMWNLVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       230 ~~va~~~~~w~~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      ...++....+++|...            .+++.+.....    +..+++.+...+|..+..++...
T Consensus        81 ~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~iv~~~~  146 (299)
T cd04509          81 LAVAPVAEALKIPLISPGATAPGLTDKKGYPYLFRTGPSDEQQAEALADYIKEYNWKKVAILYDDD  146 (299)
T ss_pred             HHHHHHHhhCCceEEeccCCCcccccccCCCCEEEecCCcHHHHHHHHHHHHHcCCcEEEEEecCc
Confidence            5556666677777622            13443333222    35678888999999999887644

This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th

>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=97.29  E-value=0.00096  Score=63.62  Aligned_cols=127  Identities=16%  Similarity=0.109  Sum_probs=89.8

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      +|.+.++++..- .+..+.-++++|++++|++-. ..|.++++.+.|++|++..+...+-..+-.+...+++++.||..+
T Consensus         2 IG~~~~lsG~~a~~G~~~~~g~~~A~~~iN~~gg-i~g~~v~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~   80 (344)
T cd06345           2 IGVLAPLSGGASTTGEAMWNGAELAAEEINAAGG-ILGRKVELVFEDTEGSPEDAVRAFERLVSQDKVDAVVGGYSSEVV   80 (344)
T ss_pred             eeEEEecCCcccccCHHHHHHHHHHHHHHHHcCC-CCCceEEEEEecCCCCHHHHHHHHHHHhccCCceEEECCcchHHH
Confidence            466677766443 256778899999999998754 468999999999999999988888777765455556668887776


Q ss_pred             eehhhhhhcccceeec---------------ccCceEEeeeh-----hHHHHHHHHH-----hcceEeecceecc
Q psy8319         230 TTVAEAAKMWNLVVKK---------------VEPWKLYTMVT-----GLLSIDLVIL-----LCWQFYDPLQRIT  279 (330)
Q Consensus       230 ~~va~~~~~w~~~~~~---------------~~~~~l~~~v~-----~~~~v~li~~-----~~W~~v~~~~~~~  279 (330)
                      ..+++....+++|...               .+++ ++++.+     ...+++.+..     ..|++++.++.+.
T Consensus        81 ~a~~~~~~~~~vp~i~~~~~~~~~t~~~~~~~~~~-~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~~  154 (344)
T cd06345          81 LALQDVAAENKVPFIVTGAASPEITTADDYETYKY-VFRAGPTNSSYAQSVADALKETLVDKHGFKTAAIVAEDA  154 (344)
T ss_pred             HHHHHHHHHcCCcEEeccCCCCcccccccccCCce-EEecCCCcHHHHHHHHHHHHHhhcccCCCceEEEEecCc
Confidence            6666777777776631               1234 344433     2344566655     7999999987653

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>KOG4440|consensus

Probab=97.13  E-value=0.0002  Score=72.20  Aligned_cols=68  Identities=29%  Similarity=0.454  Sum_probs=49.5

Q ss_pred             HHHHHHHHhc-ceEEeeeeeEEEccCCCcc-eeEEEEEe-eCCcEEEEEEEECCCCceeec-CccccCCC--CCCC
Q psy8319          22 ADDIYAAINS-TQFTGVSGDVAFSSQGDRI-ALTQIEQV-INGSYTKLGFYDTQADNLTWF-DRERWIGG--KVPQ   91 (330)
Q Consensus        22 ~~~l~~~l~~-vsF~GisG~V~Fd~nGdr~-~~y~I~q~-q~~~~v~VG~y~~~~~~l~~~-~~i~W~~~--~~P~   91 (330)
                      ...|.+.+.. -.-.|.||.|+||++|||. ++|||.|+ |+.+.|-+|.||..  ++..| ++|.|+||  ..|.
T Consensus       324 g~~l~~~l~s~~~~~g~TgrV~Fnd~gdRi~a~YdiiN~hq~rk~Vg~~~yd~~--r~~~nd~~IiWpGg~~~KP~  397 (993)
T KOG4440|consen  324 GPLLKRVLMSSKYADGVTGRVEFNDDGDRIFANYDIINLHQNRKLVGVGIYDGT--RVIPNDRKIIWPGGETEKPR  397 (993)
T ss_pred             cHHHHHHHhhhcccCCcceeEEEcCCCceeeccceeEehhhhhhhhhhccccce--eeccCCceeecCCCCcCCCc
Confidence            4455566554 3345899999999999998 58999999 56677888888742  23334 68999998  3454

>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors

Probab=97.06  E-value=0.0032  Score=61.41  Aligned_cols=111  Identities=12%  Similarity=-0.002  Sum_probs=80.5

Q ss_pred             chHHHHHHHHHhhhcCCCCCCCceEEEEeecC------CcCCchhHHH-HHHhhhccccE-EEEeecccceeeehhhhhh
Q psy8319         166 ACEPAAKLALEDVNNATDLLPGFKLQLHWNDS------ECEPGLGASV-MYNLLYNNPQK-LMLLAGCSTVCTTVAEAAK  237 (330)
Q Consensus       166 ~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds------~c~~~~~~t~-~~~~l~~k~~r-i~~i~~cs~~~~~va~~~~  237 (330)
                      .-..+.++|++++|++.    +.+|.....++      +|++..+++- +-+.+-.+... ..++|..|..+..+++...
T Consensus        13 ~~~~A~~~Av~~~N~~~----~~~l~~~~~~~~~~~~~~~~d~~~~~~~~C~~~~~gv~~~AIiGp~ss~~a~~V~si~~   88 (368)
T cd06383          13 VYKQIIDDALSYINRNI----GTGLSVVHQQVETNAEVNRNDVKVALIEVCDKADSAIVPHLVLDTTTCGDASEIKSVTG   88 (368)
T ss_pred             HHHHHHHHHHHHHhcCC----CCceEEEEecccccccccCCcHHHHHHHHHHHHHccCCcEEEECCCcchhHHHHHHHHh
Confidence            34788999999999875    88888888999      9999888887 44554444433 3445754445555778888


Q ss_pred             cccceeec---------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceecccc
Q psy8319         238 MWNLVVKK---------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRITEN  281 (330)
Q Consensus       238 ~w~~~~~~---------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~~~  281 (330)
                      .+++|..+         .+|+ ++++.+     ..++++++.++.|+.++.++.+...
T Consensus        89 ~~~IP~Is~s~~~~~~~~~p~-~ir~~Ps~~~~~~Ai~dlI~~f~W~~v~iIYddd~g  145 (368)
T cd06383          89 ALGIPTFSASYGQEGDLEQPY-LIQLMPPADDIVEAIRDIVSYYNITNAAILYDDDFV  145 (368)
T ss_pred             ccCCCEEEccCCCcCcccCce-EEEEeCChHHHHHHHHHHHHHCCCcEEEEEEEcCch
Confidence            88888732         2445 344444     3688999999999999999976543

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.

>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family

Probab=96.98  E-value=0.0014  Score=64.25  Aligned_cols=62  Identities=15%  Similarity=0.250  Sum_probs=45.5

Q ss_pred             HHHHHHHHHhcceEEeeeeeEEEccCCCc---ceeEEEEEee---CC--cEEEEEEEECCCCceeecCccccC
Q psy8319          21 IADDIYAAINSTQFTGVSGDVAFSSQGDR---IALTQIEQVI---NG--SYTKLGFYDTQADNLTWFDRERWI   85 (330)
Q Consensus        21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr---~~~y~I~q~q---~~--~~v~VG~y~~~~~~l~~~~~i~W~   85 (330)
                      -+..|.++|+|++|+|.||+|.|++ |-|   ....+|.+++   .|  .+++||+|+.. +.+.+. -..|+
T Consensus       313 ~G~~l~~~Lknv~~eGlTG~I~F~~-g~R~~~~~~l~I~~L~~~~~G~~~W~kVG~W~~~-~~~~~~-~~~wp  382 (382)
T cd06377         313 SGQYLARFLANTSFDGRTGPVWVTG-SSQVHSSRHFKVWSLRRDPVGQPTWTTVGSWQGG-RKIVMD-QGLWP  382 (382)
T ss_pred             chHHHHHHHHhCcccccceeEEEcc-CeeecccceEEEEEeccccCCCccceEEEEecCC-Cceecc-cCCCC
Confidence            5779999999999999999999964 666   3456888887   23  24999999863 334332 23563

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in

>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2

Probab=96.95  E-value=0.0011  Score=64.51  Aligned_cols=50  Identities=18%  Similarity=0.226  Sum_probs=40.3

Q ss_pred             HHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEee-CC----cEEEEEEEECC
Q psy8319          23 DDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVI-NG----SYTKLGFYDTQ   72 (330)
Q Consensus        23 ~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q-~~----~~v~VG~y~~~   72 (330)
                      ..++++|+++.|.|+||+|+||++|.|. -..+|.... +|    ..+.||+|++.
T Consensus       304 ~~~~~~~~~~~~~GLTG~i~F~~~g~r~~~~l~i~~~~~~~~~~~~~~~~~~w~~~  359 (363)
T cd06381         304 LLLLETIKKGPITGLTGKLEFNEGGDNSNVQFEILGTGYSETLGKDGRWLATWNPS  359 (363)
T ss_pred             HHHHHHHHhcCccCcceeEEeCCCCCccccEEEEEEeccCCccccceEEeeeccCC
Confidence            3458999999999999999999999985 467888887 33    15778888754

This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G

>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues

Probab=96.93  E-value=0.0016  Score=63.55  Aligned_cols=40  Identities=13%  Similarity=0.121  Sum_probs=36.4

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEeeCC
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVING   61 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~~   61 (330)
                      ++++.+.|++++|+|++|+|+||++||+...|.+.++++.
T Consensus       322 ~~~l~~~l~~~~f~GvtG~v~fd~~g~~~~~~~v~~~~~~  361 (382)
T cd06371         322 GANLAQHTRNLEFQGFNQRLRTDSGGGGQAPYVVLDTDGK  361 (382)
T ss_pred             HHHHHHHHhCccccccceEEEecCCCCcccceEEEecCCC
Confidence            4688899999999999999999999999999999999853

This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge

>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=96.92  E-value=0.0042  Score=59.13  Aligned_cols=127  Identities=14%  Similarity=0.080  Sum_probs=83.3

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      ||.+.++++..- .+..+..++++|+|+||++-.+ .|.+++++..|++|++..+...+-..+-.....+++++.+|..+
T Consensus         2 IG~~~plsG~~a~~g~~~~~g~~~a~~~iNa~ggi-~G~~v~lv~~D~~~~p~~a~~~~~~li~~~~v~~iiG~~~s~~~   80 (344)
T cd06348           2 LGVALALTGNAALYGQEQLAGLKLAEDRFNQAGGV-NGRPIKLVIEDSGGDEAEAINAFQTLINKDRVLAIIGPTLSQQA   80 (344)
T ss_pred             eeEEEeccCchhhcCHhHHHHHHHHHHHHhhcCCc-CCcEEEEEEecCCCChHHHHHHHHHHhhhcCceEEECCCCcHHH
Confidence            577777777654 3567788999999999987654 68999999999999998888887776655344444456666554


Q ss_pred             eehhhhhhcccceeec----------ccCceEEeeehh-----HHHHHHHHHh-cceEeecceec
Q psy8319         230 TTVAEAAKMWNLVVKK----------VEPWKLYTMVTG-----LLSIDLVILL-CWQFYDPLQRI  278 (330)
Q Consensus       230 ~~va~~~~~w~~~~~~----------~~~~~l~~~v~~-----~~~v~li~~~-~W~~v~~~~~~  278 (330)
                      ..+.......++|...          .+++.++.....     ..+..++... +|+.+..++..
T Consensus        81 ~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  145 (344)
T cd06348          81 FAADPIAERAGVPVVGPSNTAKGIPEIGPYVFRVSAPEAVVAPAAIAAALKLNPGIKRVAVFYAQ  145 (344)
T ss_pred             HhhhHHHHhCCCCEEeccCCCCCcCCCCCeEEEccCcHHHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence            4333444455555421          234433332221     1233455566 99999988754

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=96.92  E-value=0.0048  Score=58.02  Aligned_cols=128  Identities=14%  Similarity=0.099  Sum_probs=87.6

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      +|.+.++++... .+.....++++|+|.+|++-. ..|.+++++..|++|++..+...+-..+.......++++.||...
T Consensus         2 iG~~~~~sG~~~~~g~~~~~g~~~a~~~iN~~gg-i~g~~l~~~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~s~~~   80 (334)
T cd06347           2 IGVNLPLTGDVAAYGQSEKNGAKLAVKEINAAGG-VLGKKIELVVEDNKSDKEEAANAATRLIDQDKVVAIIGPVTSGAT   80 (334)
T ss_pred             eeEEecCCchhhhcCHhHHHHHHHHHHHHHhcCC-CCCeeEEEEEecCCCChHHHHHHHHHHhcccCeEEEEcCCccHhH
Confidence            466677766443 345567899999999999865 578999999999999999998777666654355555567777666


Q ss_pred             eehhhhhhcccceeecc---------cCceEEeeeh-----hHHHHHHH-HHhcceEeecceecc
Q psy8319         230 TTVAEAAKMWNLVVKKV---------EPWKLYTMVT-----GLLSIDLV-ILLCWQFYDPLQRIT  279 (330)
Q Consensus       230 ~~va~~~~~w~~~~~~~---------~~~~l~~~v~-----~~~~v~li-~~~~W~~v~~~~~~~  279 (330)
                      ..+++.+...++|....         .+...+++..     ...+++.+ ..+.|..++.++...
T Consensus        81 ~~v~~~~~~~~ip~i~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~  145 (334)
T cd06347          81 LAAGPIAEDAKVPMITPSATNPKVTQGKDYVFRVCFIDPFQGTVMAKFATENLKAKKAAVLYDNS  145 (334)
T ss_pred             HHhHHHHHHCCCeEEcCCCCCCCcccCCCeEEEeeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCC
Confidence            66667777777765321         1112444443     23445554 456899999887543

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=96.83  E-value=0.0047  Score=59.14  Aligned_cols=127  Identities=20%  Similarity=0.254  Sum_probs=85.4

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCC--CCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATD--LLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST  227 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~--ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~  227 (330)
                      +|.+.++++..- .+..+..+.++|+|+||++-.  ...|.+++++..|+++++..+...+-..+.......++++.||.
T Consensus         2 IG~~~p~sG~~a~~g~~~~~g~~lA~~~iN~~GGi~~i~G~~v~lv~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~   81 (347)
T cd06340           2 IGVLLPLSGGLAAIGQQCKAGAELAVEEINAAGGIKSLGGAKLELVFGDSQGNPDIGATEAERLITEEGVVALVGAYQSA   81 (347)
T ss_pred             ceeEecCCchhhhhCHHHHHHHHHHHHHHHhcCCccCCCCceEEEEEecCCCCHHHHHHHHHHHhccCCceEEecccchH
Confidence            566777766543 356778899999999998865  35799999999999999988887776655553444455576766


Q ss_pred             eeeehhhhhhcccceeec-----------ccCceEEeeeh-----hHHHHHHHHHhc------ceEeecceec
Q psy8319         228 VCTTVAEAAKMWNLVVKK-----------VEPWKLYTMVT-----GLLSIDLVILLC------WQFYDPLQRI  278 (330)
Q Consensus       228 ~~~~va~~~~~w~~~~~~-----------~~~~~l~~~v~-----~~~~v~li~~~~------W~~v~~~~~~  278 (330)
                      .+..++......++|...           .+++ .+++.+     ...+++.+..+.      |.++..++.+
T Consensus        82 ~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~-~fr~~p~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~  153 (347)
T cd06340          82 VTLAASQVAERYGVPFVVDGAVSDSITERGFKY-TFRITPHDGMFTRDMFDFLKDLNEKTGKPLKTVALVHED  153 (347)
T ss_pred             hHHHHHHHHHHhCCCEEeccccchHHhhcCCce-EEecCCChHHHHHHHHHHHHHhhHhcCCCCceEEEEecC
Confidence            655555555556666522           1244 344443     245667776664      4788877654

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family

Probab=96.75  E-value=0.0077  Score=57.16  Aligned_cols=125  Identities=16%  Similarity=0.090  Sum_probs=83.2

Q ss_pred             hhhhhhccccc-c-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce
Q psy8319         151 VGIAFCMSLNF-N-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV  228 (330)
Q Consensus       151 iG~ll~~~~~~-~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~  228 (330)
                      +|.+++.++.. - .+..+..++++|+|+||   .-..|.+++++..|++++|..+...+-..+......+++++.+|..
T Consensus         2 IG~l~plsG~~~a~~g~~~~~g~~la~~~iN---ggi~G~~v~l~~~D~~~~p~~a~~~~~~l~~~~~V~aviG~~~s~~   78 (334)
T cd06327           2 IGVLTDMSGVYADAEGKGSVEAAELAVEDFG---GGVLGRPIELVVADHQNKADVAAAKAREWIDRDGVDMIVGGPNSAV   78 (334)
T ss_pred             cccccCCCCcCccccCHHHHHHHHHHHHHhc---CCccCeEEEEEEecCCCCchHHHHHHHHHHhhcCceEEECCccHHH
Confidence            57788888776 3 45677889999999999   4456999999999999999999888777666544555555666666


Q ss_pred             eeehhhhhhcccceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecceec
Q psy8319         229 CTTVAEAAKMWNLVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRI  278 (330)
Q Consensus       229 ~~~va~~~~~w~~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~  278 (330)
                      +...+......+++...            ..|+.++....    ...+++.+..-.+.+++.++.+
T Consensus        79 ~~a~~~~~~~~~vp~i~~~s~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  144 (334)
T cd06327          79 ALAVQEVAREKKKIYIVTGAGSDDLTGKDCSPYTFHWAYDTYMLANGTAPALVKAGGKKWFFLTAD  144 (334)
T ss_pred             HHHHHHHHHHhCceEEecCCCccccccCCCCCceEEccCChHHHHHHHHHHHHHhcCCeEEEEecc
Confidence            55544455545555421            13453333322    2345554554457888877653

Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.

>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA)

Probab=96.74  E-value=0.0027  Score=60.59  Aligned_cols=42  Identities=33%  Similarity=0.608  Sum_probs=36.4

Q ss_pred             cceEEeeeeeEEEccCCCc-ceeEEEEEeeCCcEEEEEEEECC
Q psy8319          31 STQFTGVSGDVAFSSQGDR-IALTQIEQVINGSYTKLGFYDTQ   72 (330)
Q Consensus        31 ~vsF~GisG~V~Fd~nGdr-~~~y~I~q~q~~~~v~VG~y~~~   72 (330)
                      +++|.|++|+|+||++|++ ...|++.++.++++++||.|+.+
T Consensus       301 ~~~~~G~~G~v~fd~~~~~~~~~~~~~~~~~~~~~~vg~~~~~  343 (350)
T cd06366         301 STNFNGLSGPVQFDGGRRLASPAFEIINIIGKGYRKIGFWSSE  343 (350)
T ss_pred             eceEEeeeeeEEEcCCCccCCcceEEEEecCCceEEEEEEeCC
Confidence            5799999999999999997 46778888877789999999864

Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.

>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=96.73  E-value=0.0058  Score=57.99  Aligned_cols=127  Identities=13%  Similarity=0.065  Sum_probs=84.1

Q ss_pred             hhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccceee
Q psy8319         151 VGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCT  230 (330)
Q Consensus       151 iG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~  230 (330)
                      +|.+.++++.-..+....-.+++|+|+||++-. ..|.+++++..|+++++..+...+=..+.......++++.+|..+.
T Consensus         2 iG~~~p~sG~a~~G~~~~~g~~lA~~~iNa~gg-i~G~~ielv~~D~~~~p~~a~~~a~~li~~~~v~aiiG~~~s~~~~   80 (332)
T cd06344           2 IAVVVPIGKNPNLAEEILRGVAQAQTEINLQGG-INGKLLKVVIANDGNDPEIAKKVADELVKDPEILGVVGHYSSDATL   80 (332)
T ss_pred             eEEEEecCCChhhHHHHHHHHHHHHHHHHhcCC-CCCCeEEEEEECCCCChHHHHHHHHHHhcccCceEEEcCCCcHHHH
Confidence            466777776622355566789999999998754 4699999999999999999988776665543444444554444444


Q ss_pred             ehhhhhhcccceeec----------ccCceEEeeeh-----hHHHHHHHHHhc-ceEeecceecc
Q psy8319         231 TVAEAAKMWNLVVKK----------VEPWKLYTMVT-----GLLSIDLVILLC-WQFYDPLQRIT  279 (330)
Q Consensus       231 ~va~~~~~w~~~~~~----------~~~~~l~~~v~-----~~~~v~li~~~~-W~~v~~~~~~~  279 (330)
                      .++......+++...          .+++ .+++.+     ...+++.+.... |+.++.++.+.
T Consensus        81 a~~~~~~~~~ip~i~~~a~~~~lt~~~~~-~fr~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  144 (332)
T cd06344          81 AALDIYQKAKLVLISPTSTSVKLSNPGPY-FFRTVPSNAVAARALAKYLKKKNKIKKVAIFYNST  144 (332)
T ss_pred             HHHHHHhhcCceEEccCcCchhhcCCCCc-EEEeCCCcHHHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence            444555555665521          2445 344433     356678777766 99998887643

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins

Probab=96.71  E-value=0.0062  Score=57.95  Aligned_cols=126  Identities=17%  Similarity=0.186  Sum_probs=86.2

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      +|.+.++++..- .+..+..+.++|+++||++-. ..|.+++++..|+++++..+...+-..+..+....++.+.+|..+
T Consensus         2 iG~l~p~sG~~a~~g~~~~~g~~~a~~~iN~~gg-i~G~~v~~~~~D~~~~~~~a~~~a~~li~~~~v~aiig~~~s~~~   80 (346)
T cd06330           2 IGVITFLSGRAAIFGEPARNGAELAVEEINAAGG-IGGRKIELVVRDEAGKPDEAIREARELVENEGVDMLIGLISSGVA   80 (346)
T ss_pred             eeEEeecCCchhhhcHHHHHHHHHHHHHHhhcCC-cCCeEEEEEEecCCCCHHHHHHHHHHHHhccCCcEEEcccchHHH
Confidence            566777776653 345678899999999998854 568999999999999998888888777765333334456566555


Q ss_pred             eehhhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhc--ceEeecceec
Q psy8319         230 TTVAEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLC--WQFYDPLQRI  278 (330)
Q Consensus       230 ~~va~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~--W~~v~~~~~~  278 (330)
                      ..++......++|...            .+++ ++++.+     ...+++.+....  |+.+..++..
T Consensus        81 ~~~~~~~~~~~ip~i~~~s~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  147 (346)
T cd06330          81 LAVAPVAEELKVFFIATDPGTPRLTEEPDNPY-VFRTRNSTIMDAVAGALYAAKLDKKAKTWATINPD  147 (346)
T ss_pred             HHHHHHHHHcCCeEEEcCCCCcccccCCCCCc-eEEecCChHHHHHHHHHHHHHhCcCccEEEEECCc
Confidence            5556666666666521            1234 333333     345667777764  9999988754

Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.

>KOG1056|consensus

Probab=96.65  E-value=0.0056  Score=65.08  Aligned_cols=141  Identities=17%  Similarity=0.221  Sum_probs=96.9

Q ss_pred             ecCCccchhhhhhhhhhhcccccc-----------cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHH
Q psy8319         139 ASSHPVCNTIMLVGIAFCMSLNFN-----------LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASV  207 (330)
Q Consensus       139 k~Ss~~l~~~iliG~ll~~~~~~~-----------~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~  207 (330)
                      +..+..+.--+.+|++++.-..-.           .+..|.-++..|+|.||+ +++++|.+|-+...||--.+..++..
T Consensus        22 ~~~~~~~~gdi~lgglFpvh~k~~~~~~cg~~~~~~gi~r~eAml~al~~iN~-~~lLp~~kLG~~i~DTCs~~t~aleq  100 (878)
T KOG1056|consen   22 LRVVARIPGDIILGGLFPVHEKGGGAPQCGRIREPRGIQRLEAMLFALDEINN-PDLLPNIKLGARILDTCSRSTYALEQ  100 (878)
T ss_pred             ceeeccCCCCeEEcceeeecccCCCCCcccccccchhHHHHHHHHHHHHHhcC-cccCCCceeeeeEeeccCCcHHHHHh
Confidence            344455556677888877643222           256778899999999999 99999999999999998888777766


Q ss_pred             HHHhhhc---c------------ccEEEEe-ecccceeeehhhhhhccccee------------ecccCceEEeeeh---
Q psy8319         208 MYNLLYN---N------------PQKLMLL-AGCSTVCTTVAEAAKMWNLVV------------KKVEPWKLYTMVT---  256 (330)
Q Consensus       208 ~~~~l~~---k------------~~ri~~i-~~cs~~~~~va~~~~~w~~~~------------~~~~~~~l~~~v~---  256 (330)
                      .++.+..   +            +.-+..+ ++.|+++-.++..-+-.++|+            |..++++.+++.+   
T Consensus       101 sl~Fv~~~~~~~~~e~~c~~g~sp~v~~VIG~s~Ssvsi~vanlLrlf~ipQisyaSts~~LSdk~ry~~F~RtVP~D~~  180 (878)
T KOG1056|consen  101 SLSFVRASLTSDDSEVRCPDGYSPPVVAVIGPSYSSVSIAVANLLRLFLIPQISYASTSPDLSDKTRYDYFLRTVPSDVF  180 (878)
T ss_pred             hHHHHHhcccCCCcceecCCCCCCceeEEeCCCCchHHHHHHHHHHhhcCceeccccCCcccccchhhhceeeecCChHH
Confidence            6554432   2            1122233 555555444555555556665            4567775555544   


Q ss_pred             -hHHHHHHHHHhcceEeecceeccc
Q psy8319         257 -GLLSIDLVILLCWQFYDPLQRITE  280 (330)
Q Consensus       257 -~~~~v~li~~~~W~~v~~~~~~~~  280 (330)
                       +.+.+++++.++|+.|..++.+.+
T Consensus       181 Qa~Am~~il~~f~W~yVstv~s~~d  205 (878)
T KOG1056|consen  181 QAQAMVDILKKFNWNYVSTVASEGD  205 (878)
T ss_pred             HHHHHHHHHHHhCeeEeeehhcCcc
Confidence             468899999999999998876554

>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems

Probab=96.64  E-value=0.01  Score=56.37  Aligned_cols=127  Identities=19%  Similarity=0.157  Sum_probs=85.6

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      +|.+.++++..- .+..+..++++|++.+|++-.+ .|.+++++..|++|++..+...+-..+..+...+++.+.||..+
T Consensus         2 IG~~~plsG~~a~~G~~~~~g~~~a~~~iN~~ggi-~G~~i~l~~~D~~~~~~~a~~~a~~li~~~~V~~i~G~~~s~~~   80 (340)
T cd06349           2 IGVAGPLTGDNAQYGTQWKRAFDLALDEINAAGGV-GGRPLNIVFEDSKSDPRQAVTIAQKFVADPRIVAVLGDFSSGVS   80 (340)
T ss_pred             eeEEecCCCcchhcCccHHHHHHHHHHHHHhhCCc-CCeEEEEEEeCCCCChHHHHHHHHHHhccCCeEEEECCCccHhH
Confidence            577777777653 4677888999999999998666 79999999999999999998877777665555444455566555


Q ss_pred             eehhhhhhcccceeec----------ccCceEEeeeh-----hHHHHHHH-HHhcceEeecceecc
Q psy8319         230 TTVAEAAKMWNLVVKK----------VEPWKLYTMVT-----GLLSIDLV-ILLCWQFYDPLQRIT  279 (330)
Q Consensus       230 ~~va~~~~~w~~~~~~----------~~~~~l~~~v~-----~~~~v~li-~~~~W~~v~~~~~~~  279 (330)
                      ..++......+++...          ..++ +++..+     ...+++.+ ....|..++.++...
T Consensus        81 ~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~  145 (340)
T cd06349          81 MAASPIYQRAGLVQLSPTNSHPDFTKGGDF-IFRNSTSQAIEAPLLADYAVKDLGFKKVAILSVNT  145 (340)
T ss_pred             HHhHHHHHhCCCeEEecCCCCCccccCCCe-EEEccCCcHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence            4444454444554311          1333 344433     12345553 456899998887654

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=96.53  E-value=0.016  Score=55.44  Aligned_cols=127  Identities=14%  Similarity=0.129  Sum_probs=85.5

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCC-CC--ceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccc
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLL-PG--FKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCS  226 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll-~g--f~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs  226 (330)
                      ||.+.++++..- .+..+.-+.++|++++|++-.+. .|  ++++++..|++|++..+...+=..+...-..+.+++.||
T Consensus         2 IG~l~plsG~~a~~g~~~~~g~~lA~~~iN~~GGi~~~G~~~~iel~~~D~~~~p~~a~~~~~~li~~~~v~~iiG~~~s   81 (347)
T cd06336           2 IGFSGPLSGPAAAWGLPGLRGVQLAAEEINAAGGIKVGGKKYKVEIVSYDDKYDPAEAAANARRLVQQDGVKFILGPIGG   81 (347)
T ss_pred             cceeccCcCcccccChhhHHHHHHHHHHHHhcCCcccCCceeeEEEEEecCCCCHHHHHHHHHHHHhhcCceEEEeCCCC
Confidence            577777777553 35567889999999999886665 34  689999999999999998887777766344555566666


Q ss_pred             ceeeehhhhhhcccceeec-----------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319         227 TVCTTVAEAAKMWNLVVKK-----------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       227 ~~~~~va~~~~~w~~~~~~-----------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      ..+.. +......++|...           ..++ .+++.+     .....+.+....|.+++.++.+.
T Consensus        82 ~~~~~-~~~~~~~~ip~i~~~~~~~~~~~~~~~~-~fr~~~~~~~~~~~~~~~~~~~~~~~v~il~~d~  148 (347)
T cd06336          82 GITAA-QQITERNKVLLLTAYSSDLSIDTAGNPL-TFRVPPIYNVYGVPFLAYAKKPGGKKVALLGPND  148 (347)
T ss_pred             chhhh-hhhhhhcCceEEeccCCcccccccCCce-EEEecCCchhHHHHHHHHHhhcCCceEEEEccCC
Confidence            55544 4555555555421           1233 344333     24455666557899999987653

This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs)

Probab=96.39  E-value=0.019  Score=53.63  Aligned_cols=113  Identities=14%  Similarity=0.089  Sum_probs=77.5

Q ss_pred             HHHHHHHHHhhhcCCCCCCCceEEEEeecCC-cCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhcccceeec-
Q psy8319         168 EPAAKLALEDVNNATDLLPGFKLQLHWNDSE-CEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKK-  245 (330)
Q Consensus       168 ~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~-c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~~-  245 (330)
                      ..+.++|++.+|.....++++.+++...+.. .++..+...+=..+..+...++++|.||..+..++..+..+++|... 
T Consensus        14 ~~a~~~Ai~~iN~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~c~l~~~~~v~ai~G~~~s~~~~~v~~~~~~~~iP~is~   93 (328)
T cd06351          14 ELAFRAAIDALNTENLNALPTKLSVEVVEVNTNDPFSLLRAVCDLLVSQGVAAIFGPTSSESASAVQSICDALEIPHISI   93 (328)
T ss_pred             HHHHHHHHHHhccCccccCCeeEEEEEEEeCCCChHHHHHHHHHHHhccCcEEEECCCCHHHHHHHHHHhccCCCCeEEe
Confidence            5788999999999888877777777666555 45555544443444344444455588877776667778888887621 


Q ss_pred             -----------ccCceEEeeeh----hHHHHHHHHHhcceEeecceeccc
Q psy8319         246 -----------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRITE  280 (330)
Q Consensus       246 -----------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~~  280 (330)
                                 .+++.++....    +.++++++.++.|..++.++....
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~l~~~~w~~v~iiy~~~~  143 (328)
T cd06351          94 SGGSEGLSDKEESSTTLQLYPSLEDLADALLDLLEYYNWTKFAIIYDSDE  143 (328)
T ss_pred             ecCcccccccccccceEEecCCHHHHHHHHHHHHHHcCCcEEEEEEeCch
Confidence                       23443333333    467889999999999999987654

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors

>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins

Probab=96.36  E-value=0.018  Score=54.90  Aligned_cols=125  Identities=12%  Similarity=0.090  Sum_probs=82.7

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      +|.+.++++..- .+..+..++++|+++||++-.+ .|.+++++..|+++++..+...+-..+..| ...++++.+|..+
T Consensus         2 IG~l~p~sG~~a~~G~~~~~g~~~a~~~iN~~GGi-~G~~i~l~~~D~~~~p~~a~~~a~~lv~~~-v~aiiG~~~s~~~   79 (342)
T cd06329           2 IGVIDPLSGPFASLGELVRRGLQLAADEINAKGGV-DGRPIELVEEDNKGSPQEALRKAQKAIDDG-VRLVVQGNSSSVA   79 (342)
T ss_pred             eeeeccCCCCcccccHHHHHHHHHHHHHHHhcCCc-CCeEEEEEeccCCCChHHHHHHHHHHHHhC-CeEEEcccchHHH
Confidence            577777776543 3567788999999999986443 589999999999999998887776666543 3344456666555


Q ss_pred             eeh-------hhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhc-ceEeecceec
Q psy8319         230 TTV-------AEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLC-WQFYDPLQRI  278 (330)
Q Consensus       230 ~~v-------a~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~-W~~v~~~~~~  278 (330)
                      ..+       +.....++++...            ..++ .+++.+     ...+++.+.... |+++..++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~-~fr~~~~~~~~~~~l~~~~~~~~~~k~v~i~~~~  152 (342)
T cd06329          80 LALTEAVRKHNQRNPGKEVLYLNYASVAPALTGEKCSFW-HFRTDANTDMKMEALASYIKKQPDGKKVYLINQD  152 (342)
T ss_pred             HHhhhhhhhhhhhhccCCeEEEecCCCCchhhhccCcce-EEEecCChHHHHHHHHHHHHhcccCceEEEEeCC
Confidence            444       2333445555421            1234 334433     345667776665 9999988754

Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.

>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors

Probab=96.11  E-value=0.0062  Score=57.64  Aligned_cols=37  Identities=22%  Similarity=0.539  Sum_probs=32.1

Q ss_pred             eeeeeEEEccCCCcce-eEEEEEeeCCcEEEEEEEECC
Q psy8319          36 GVSGDVAFSSQGDRIA-LTQIEQVINGSYTKLGFYDTQ   72 (330)
Q Consensus        36 GisG~V~Fd~nGdr~~-~y~I~q~q~~~~v~VG~y~~~   72 (330)
                      |+||+|+||++|||.. .++|.+.+++.+++||.|+..
T Consensus       286 g~tG~v~f~~~g~r~~~~~~~~~~~~~~~~~vg~w~~~  323 (327)
T cd06382         286 GLTGRIEFDSSGQRSNFTLDVIELTESGLRKVGTWNSS  323 (327)
T ss_pred             ecccceeeCCCCCEeeeEEEEEeccccCceEEEEECCC
Confidence            9999999999999854 578888887789999999853

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri

>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C

Probab=95.88  E-value=0.026  Score=54.87  Aligned_cols=112  Identities=13%  Similarity=0.148  Sum_probs=83.8

Q ss_pred             chHHHHHHHHHhhhcCCCCCCCceEEE----------EeecCCcCC--chhHHHHHHhhhc-cccEEEEeecccceeeeh
Q psy8319         166 ACEPAAKLALEDVNNATDLLPGFKLQL----------HWNDSECEP--GLGASVMYNLLYN-NPQKLMLLAGCSTVCTTV  232 (330)
Q Consensus       166 ~c~~~~~~A~~~iN~~~~ll~gf~l~l----------~~~ds~c~~--~~~~t~~~~~l~~-k~~ri~~i~~cs~~~~~v  232 (330)
                      ...++++.|++.++++- ...|.+.++          +++++.|..  +.|..+.....-. +.-.++++|.|.++++++
T Consensus        19 ~v~~av~~a~~~~~~~~-~~~g~~f~~~a~~~~~~~~~y~~~~C~sstceg~~~l~~l~~~~~~gcv~lGP~CtYat~~~   97 (380)
T cd06369          19 FVKEAVEEAIEIVAERL-AEAGLNVTVNANFEGFNTSLYRSRGCRSSTCEGVELLKKLSVTGRLGCVLLGPSCTYATFQM   97 (380)
T ss_pred             HHHHHHHHHHHHHHhhh-hccCceEEEEEeeeccccceeccCCCCcccchHHHHHHHHHhcCccCcEEEcCccceehhhh
Confidence            45789999999998764 667888788          888999975  7888888776643 345667789999999999


Q ss_pred             hhhhhcccceeecc--------cCceEEeeeh-----hHHHHHHH------HHhcceEeecceecc
Q psy8319         233 AEAAKMWNLVVKKV--------EPWKLYTMVT-----GLLSIDLV------ILLCWQFYDPLQRIT  279 (330)
Q Consensus       233 a~~~~~w~~~~~~~--------~~~~l~~~v~-----~~~~v~li------~~~~W~~v~~~~~~~  279 (330)
                      ++.+.+|++|..+-        +..++.|+++     +.+.+++.      .+..|+..- ++.+.
T Consensus        98 ~~~~~~~~~P~ISaGsfglscd~k~~LTR~~pparK~~~~~~~f~~~~~~~~~~~W~~ay-vyk~~  162 (380)
T cd06369          98 VDDEFNLSLPIISAGSFGLSCDYKENLTRLLPPARKISDFFVDFWKEKNFPKKPKWETAY-VYKKQ  162 (380)
T ss_pred             hhhhhcCCCceEeccccccCCCchhhhhhcCchHHHHHHHHHHHHhcccccCCCCCceeE-EEcCC
Confidence            99999999998431        2223666665     46778888      588997544 55543

Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.

>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids

Probab=95.70  E-value=0.05  Score=50.90  Aligned_cols=125  Identities=10%  Similarity=0.081  Sum_probs=79.3

Q ss_pred             hhhhhhccccccc-ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFNL-PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~~-~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      +|.+.++++.... +.....++++|+++||+  ....|.+++++..|+++++..+...+-..+..+....++++.+|...
T Consensus         2 IG~~~~lsG~~~~~g~~~~~g~~~a~~~iN~--ggi~g~~i~l~~~d~~~~~~~a~~~~~~li~~~~v~~vig~~~s~~~   79 (312)
T cd06333           2 IGAILSLTGPAASLGIPEKKTLELLPDEINA--GGIGGEKVELIVLDDGSDPTKAVTNARKLIEEDKVDAIIGPSTTPAT   79 (312)
T ss_pred             eeEEeecCCcchhhCHHHHHHHHHHHHHHhc--CCcCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCeEEEECCCCCHHH
Confidence            5666777665432 45567799999999998  56679999999999999998887666554443344444455554433


Q ss_pred             eehhhhhhcccceeecc----------cCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319         230 TTVAEAAKMWNLVVKKV----------EPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI  278 (330)
Q Consensus       230 ~~va~~~~~w~~~~~~~----------~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~  278 (330)
                      ....+.....++|....          .++ .+++..     ...+++.+...+|++++.+...
T Consensus        80 ~~~~~~~~~~~vP~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~vail~~~  142 (312)
T cd06333          80 MAVAPVAEEAKTPMISLAPAAAIVEPKRKW-VFKTPQNDRLMAEAILADMKKRGVKTVAFIGFS  142 (312)
T ss_pred             HHHHHHHHhcCCCEEEccCCccccCCCCCc-EEEcCCCcHHHHHHHHHHHHHcCCCEEEEEecC
Confidence            33334444455554211          223 233322     2355666777899999988654

This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.

>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway

Probab=95.49  E-value=0.056  Score=51.23  Aligned_cols=124  Identities=12%  Similarity=0.051  Sum_probs=79.8

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      +|.+.+.++... .+..+.-++++|+|++|..   ..|.+++++..|+++++..+...+-..+...-...++++.+|..+
T Consensus         2 IG~~~plsG~~a~~g~~~~~g~~lAv~~ingg---i~G~~i~l~~~D~~~~p~~a~~~~~~lv~~~~v~~viG~~~s~~~   78 (333)
T cd06359           2 IGFITTLSGPAAALGQDMRDGFQLALKQLGGK---LGGLPVEVVVEDDGLKPDVAKQAAERLIKRDKVDFVTGVVFSNVL   78 (333)
T ss_pred             eEEEEecccchhhhhHHHHHHHHHHHHHhCCc---cCCEEEEEEecCCCCChHHHHHHHHHHHhhcCCcEEEccCCcHHH
Confidence            466666666443 2456788999999999832   458999999999999998888777666554334444456555554


Q ss_pred             eehhhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319         230 TTVAEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI  278 (330)
Q Consensus       230 ~~va~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~  278 (330)
                      ..++......++|...            ..++. +++..     ...+.+.+...+|++++.++.+
T Consensus        79 ~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~g~~~vail~~~  143 (333)
T cd06359          79 LAVVPPVLESGTFYISTNAGPSQLAGKQCSPYF-FSTSWQNDQVHEAMGKYAQDKGYKRVFLIAPN  143 (333)
T ss_pred             HHHHHHHHHcCCeEEecCCCccccccccCCCcE-EEeeCChHhhHHHHHHHHHHhCCCeEEEEecC
Confidence            4444444455555421            13443 33333     2455566666789999988754

This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.

>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins

Probab=95.08  E-value=0.12  Score=48.75  Aligned_cols=127  Identities=13%  Similarity=0.042  Sum_probs=78.8

Q ss_pred             hhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce
Q psy8319         150 LVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV  228 (330)
Q Consensus       150 liG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~  228 (330)
                      .+|.+.++++..- .+....-++++|+|.||++-. ..|+.+++...|+++++..+....=..+-......++++.+|..
T Consensus         2 ~IG~~~~lsG~~a~~g~~~~~~~~~a~~~iN~~gg-i~G~~v~l~~~D~~~d~~~~~~~~~~l~~~~~v~avig~~~s~~   80 (336)
T cd06326           2 VLGQSAPLSGPAAALGRAYRAGAQAYFDAVNAAGG-VNGRKIELVTLDDGYEPERTVANTRKLIEDDKVFALFGYVGTPT   80 (336)
T ss_pred             EEEEeccCCCcchhhHHHHHHHHHHHHHHHHhcCC-cCCceEEEEEeCCCCChHHHHHHHHHHHhhcCcEEEEeCCCchh
Confidence            4677778877654 245567889999999998854 47999999999999999887655544433223443444434332


Q ss_pred             eeehhhhhhcccceeecc-----------cCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319         229 CTTVAEAAKMWNLVVKKV-----------EPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI  278 (330)
Q Consensus       229 ~~~va~~~~~w~~~~~~~-----------~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~  278 (330)
                      ...+.......++|....           .++ .+++..     ...+++.+...+|++++.++..
T Consensus        81 ~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~~~  145 (336)
T cd06326          81 TAAALPLLEEAGVPLVGPFTGASSLRDPPDRN-VFNVRASYADEIAAIVRHLVTLGLKRIAVFYQD  145 (336)
T ss_pred             HHHHHHHHHHcCCeEEEecCCcHHhcCCCCCc-eEEeCCChHHHHHHHHHHHHHhCCceEEEEEec
Confidence            222233333444444221           233 333332     2456677777899999888654

The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.

>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF)

Probab=94.98  E-value=0.13  Score=48.70  Aligned_cols=127  Identities=20%  Similarity=0.171  Sum_probs=79.0

Q ss_pred             hhhhhhccccccc-ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFNL-PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~~-~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      +|.++++++.... +....-..++|+++||++-.+ .|.+++++..|++++|..+...+=..+...-..+.+++.+|..+
T Consensus         2 IG~l~p~sG~~a~~g~~~~~g~~~a~~~iN~~gGi-~G~~i~l~~~D~~~~p~~a~~~a~~Li~~~~V~aiiG~~~s~~~   80 (333)
T cd06331           2 IGLLFSLSGPAAISEPSLRNAALLAIEEINAAGGI-LGRPLELVVEDPASDPAFAAKAARRLIRDDKVDAVFGCYTSASR   80 (333)
T ss_pred             eEEEecCCCccccccHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEECCCCCHHHHHHHHHHHHhccCCcEEEecccHHHH
Confidence            5777788766542 455667899999999988554 68999999999999998888777555544234444456555544


Q ss_pred             eehhhhhhcccceeec--------ccCceEEeeeh----hHHHHHHHHHhcceEeecceec
Q psy8319         230 TTVAEAAKMWNLVVKK--------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRI  278 (330)
Q Consensus       230 ~~va~~~~~w~~~~~~--------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~  278 (330)
                      ..++.....-++|...        ..++.++....    ...+++.+..-.|.+++.++.+
T Consensus        81 ~a~~~~~~~~~vp~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~il~~d  141 (333)
T cd06331          81 KAVLPVVERGRGLLFYPTQYEGGECSPNVFYTGATPNQQLLPLIPYLMEKYGKRFYLIGSD  141 (333)
T ss_pred             HHHHHHHHhcCceEEeCCCCCCCcCCCCeEEccCChHHhHHHHHHHHHHhcCCeEEEECCC
Confidence            4444443333333311        23443332221    2345555544459999888754

This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t

>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF)

Probab=94.93  E-value=0.13  Score=49.35  Aligned_cols=127  Identities=19%  Similarity=0.117  Sum_probs=76.4

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      +|.+.++++..- .+..+.-+++||+|+||++=.+. |.+++++..|++++|..+...+=..+..+.....+++-+|..+
T Consensus         2 IG~~~plsG~~a~~G~~~~~g~~la~~~iN~~GGi~-G~~ielv~~D~~~~p~~a~~~a~~Li~~~~V~~iiG~~~S~~~   80 (348)
T cd06355           2 VGILHSLSGTMAISETTLKDAELLAIEEINAAGGVL-GRKIEAVVEDGASDWPTFAEKARKLLTQDKVAAVFGCWTSASR   80 (348)
T ss_pred             eEEEEcCCCcccccchhHHHHHHHHHHHHHhcCCCC-CcEEEEEEeCCCCCHHHHHHHHHHHHHhCCCcEEEeccchhhH
Confidence            566777766553 35567889999999999886654 8999999999999998888777666655444444444444333


Q ss_pred             eehhhhhhcccceee--------cccCceEEeeeh----hHHHHHHHHH-hcceEeecceec
Q psy8319         230 TTVAEAAKMWNLVVK--------KVEPWKLYTMVT----GLLSIDLVIL-LCWQFYDPLQRI  278 (330)
Q Consensus       230 ~~va~~~~~w~~~~~--------~~~~~~l~~~v~----~~~~v~li~~-~~W~~v~~~~~~  278 (330)
                      ..+.......+++..        ...|+.++....    ....++.+.. ..+++++.++.+
T Consensus        81 ~a~~~~~~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~k~vaii~~d  142 (348)
T cd06355          81 KAVLPVFERHNGLLFYPVQYEGLEQSPNVFYTGAAPNQQIIPAVDWLMSNKGGKRFYLVGSD  142 (348)
T ss_pred             HHHHHHHhccCCceecCCCccCCCCCCCEEEeCCChHHhHHHHHHHHHhccCCCeEEEECCc
Confidence            222222222222221        123443332222    1234454443 358888887654

This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.

>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria

Probab=94.90  E-value=0.12  Score=49.05  Aligned_cols=81  Identities=16%  Similarity=0.162  Sum_probs=58.4

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      ||.+.+.++..- .+..+.-++++|+|++|+.-.-..|.+++++..|++|+|..+....-..+-......++++.||..+
T Consensus         2 IG~~~~lsG~~a~~G~~~~~g~~lav~~inn~~ggi~G~~i~lv~~D~~~~p~~a~~~~~~li~~~~V~avvG~~~S~~~   81 (333)
T cd06328           2 IGLITDLSGPLAAYGKQTLTGFMLGLEYATGGTMQVDGRPIEVIVKDDAGNPEVAVSLARELIGDDGVDILVGSTSSGVA   81 (333)
T ss_pred             eEEEEecCCchhhhhHHHHHHHHHHHHHHHhcCCCcCCEEEEEEEecCCCChHHHHHHHHHHHHhcCCeEEEccCCcHHH
Confidence            455555555443 2467788999999999876666779999999999999999998777666665344444456666554


Q ss_pred             ee
Q psy8319         230 TT  231 (330)
Q Consensus       230 ~~  231 (330)
                      ..
T Consensus        82 ~a   83 (333)
T cd06328          82 LA   83 (333)
T ss_pred             HH
Confidence            43

Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.

>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure []

Probab=94.85  E-value=0.038  Score=51.93  Aligned_cols=32  Identities=28%  Similarity=0.577  Sum_probs=28.6

Q ss_pred             hHHHHHHHHHHhcceEEeeeeeEEEcc-CCCcc
Q psy8319          19 KEIADDIYAAINSTQFTGVSGDVAFSS-QGDRI   50 (330)
Q Consensus        19 ~~~~~~l~~~l~~vsF~GisG~V~Fd~-nGdr~   50 (330)
                      ...+.++.++|++++|+|++|+|+||+ +|||.
T Consensus       306 ~~~g~~l~~~l~~~~f~G~tG~v~f~~~~G~~~  338 (348)
T PF01094_consen  306 WQNGSQLLKYLRNVSFEGLTGRVSFDSNDGDRT  338 (348)
T ss_dssp             STTHHHHHHHHHTEEEEETTEEEEEETTTSBEE
T ss_pred             cccHHHHHHHHhheeeeCCCCCEEEeCCCCCcC
Confidence            446778999999999999999999999 88983

; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....

>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor

Probab=94.69  E-value=0.041  Score=52.98  Aligned_cols=37  Identities=24%  Similarity=0.564  Sum_probs=31.5

Q ss_pred             eeeeeEEEccCCCcce-eEEEEEeeCCcEEEEEEEECC
Q psy8319          36 GVSGDVAFSSQGDRIA-LTQIEQVINGSYTKLGFYDTQ   72 (330)
Q Consensus        36 GisG~V~Fd~nGdr~~-~y~I~q~q~~~~v~VG~y~~~   72 (330)
                      |+||+|+||++|-|.. .-+|.++..+..++||.|++.
T Consensus       291 glTg~i~f~~~g~R~~~~l~v~~l~~~g~~kig~W~~~  328 (333)
T cd06394         291 GLTGRIEFNSKGQRSNYTLKILQKTRSGFRQIGQWHSN  328 (333)
T ss_pred             eeecceecCCCCcCcccEEEEEEecCCcceEEEEEeCC
Confidence            9999999999999864 558888886678999999864

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act

>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=94.66  E-value=0.21  Score=47.65  Aligned_cols=127  Identities=17%  Similarity=0.136  Sum_probs=78.5

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      ||.+.++++..- .+.....++++|+|++|++-.+ .|..++++..|+++++..+...+-..+........+++.+|...
T Consensus         2 IG~~~plsG~~a~~g~~~~~g~~la~~~iN~~gGi-~G~~i~lv~~D~~~~p~~a~~~a~~Li~~~~V~aiiG~~~s~~~   80 (347)
T cd06335           2 IGVDADFSGGSAPSGVSIRRGARLAIDEINAAGGV-LGRKLELVERDDRGNPARGLQNAQELAADEKVVAVLGGLHTPVA   80 (347)
T ss_pred             eeeecCccCccccccHHHHHHHHHHHHHHHhcCCc-CCeEEEEEeccCCCCcHHHHHHHHHHhccCCeEEEEcCCCCHHH
Confidence            577777777543 2455678899999999988543 68999999999999999988887666654333333344334333


Q ss_pred             eehhhhhhcccceeec-------------ccCceEEeeeh-----hHHHHHHHH-HhcceEeecceecc
Q psy8319         230 TTVAEAAKMWNLVVKK-------------VEPWKLYTMVT-----GLLSIDLVI-LLCWQFYDPLQRIT  279 (330)
Q Consensus       230 ~~va~~~~~w~~~~~~-------------~~~~~l~~~v~-----~~~~v~li~-~~~W~~v~~~~~~~  279 (330)
                      ..+......-++|...             ..++ .+++..     ...+++.+. ...|.+++.++.+.
T Consensus        81 ~a~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~~-~Fr~~~~~~~~~~~~a~~~~~~~~~~~v~ii~~~~  148 (347)
T cd06335          81 LANLEFIQQNKIPLIGPWAAGTPITRNGAPPNY-IFRVSADDSIQAPFLVDEAVKRGGFKKVALLLDNT  148 (347)
T ss_pred             HhhhHHHHhcCCcEEecCCCCcccccCCCCCCC-EEEeccChHHHHHHHHHHHHHhcCCCeEEEEeccC
Confidence            3333333333343311             1234 334433     224555543 44599999998754

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=94.65  E-value=0.16  Score=48.64  Aligned_cols=129  Identities=12%  Similarity=0.001  Sum_probs=84.2

Q ss_pred             hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319         149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST  227 (330)
Q Consensus       149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~  227 (330)
                      +-+|.+.++++... .+....-..++|++.+|++-.+ .|.+++++..|+++++..+...+-..+.......++.+.+|.
T Consensus         7 i~iG~~~~~sG~~a~~g~~~~~g~~~a~~~~Na~gGi-~G~~i~l~~~D~~~~~~~a~~~a~~li~~~~v~avvG~~~s~   85 (362)
T cd06343           7 IKIGNTMPLSGPASAYGVIGRTGAAYFFMINNDQGGI-NGRKIELIVEDDGYSPPKTVEQTRKLVESDEVFAMVGGLGTP   85 (362)
T ss_pred             EEEeeccCCCCchhhhcHHHHHHHHHHHHHHHhcCCc-CCeEEEEEEecCCCChHHHHHHHHHHHhhcCeEEEEecCCcH
Confidence            57888888887665 3566677889999999987554 689999999999999988887777766544444444454444


Q ss_pred             eeeehhhhhhcccceeec------------ccCceEEeeeh-----hHHHHHH-HHHhcceEeecceecc
Q psy8319         228 VCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDL-VILLCWQFYDPLQRIT  279 (330)
Q Consensus       228 ~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~l-i~~~~W~~v~~~~~~~  279 (330)
                      .+.........-++|...            .+++.+ ++.+     ...+++. ....+|.+++.++...
T Consensus        86 ~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~  154 (362)
T cd06343          86 TNLAVQKYLNEKKVPQLFPASGASKWNDPKPFPWTF-GWQPSYQDEARIYAKYLVEEKPNAKIAVLYQND  154 (362)
T ss_pred             HHHHhHHHHHhcCCceEecccccHhhhCCCCCCceE-ecCCChHHHHHHHHHHHHHhCCCceEEEEEecc
Confidence            433333444444444311            244533 3333     2355563 4567899999987643

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides

Probab=94.54  E-value=0.058  Score=51.16  Aligned_cols=125  Identities=18%  Similarity=0.127  Sum_probs=78.3

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      +|.+.++++..- .+.....++++|+++||+.-.+ .|++++++..|++|++..+...+=..+...-...++++.||..+
T Consensus         2 IG~~~plsG~~a~~g~~~~~g~~la~~~iN~~gGi-~G~~i~l~~~D~~~~p~~a~~~a~~Li~~~~v~aviG~~~s~~a   80 (333)
T cd06358           2 IGLLVPLSGPAGIFGPSCEAAAELAVEEINAAGGI-LGREVELVIVDDGSPPAEAAAAAARLVDEGGVDAIIGWHTSAVR   80 (333)
T ss_pred             eEEEecCcCchhhcchhHHHHHHHHHHHHHhcCCc-CCcEEEEEEECCCCChHHHHHHHHHHHHhCCCcEEEecCcHHHH
Confidence            566777766543 2444567889999999987554 68999999999999999999877666655344445557666665


Q ss_pred             eehhhhhhcccceeec--------ccCceEEeeeh-----hHHHHHH-HHHhcceEeecceec
Q psy8319         230 TTVAEAAKMWNLVVKK--------VEPWKLYTMVT-----GLLSIDL-VILLCWQFYDPLQRI  278 (330)
Q Consensus       230 ~~va~~~~~w~~~~~~--------~~~~~l~~~v~-----~~~~v~l-i~~~~W~~v~~~~~~  278 (330)
                      ..+..... .++|...        ..++ .+++..     ....++. .....|.+++.++.+
T Consensus        81 ~a~~~~~~-~~vp~i~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~g~~~v~i~~~~  141 (333)
T cd06358          81 NAVAPVVA-GRVPYVYTSLYEGGECNPG-VFLTGETPEQQLAPAIPWLAEEKGARRWYLIGND  141 (333)
T ss_pred             HHHHHHHh-cCceEEeCCCcCCCCCCCC-EEEcCCCcHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence            54444433 4444421        1344 333332     1123332 334578888877654

This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int

>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=94.54  E-value=0.21  Score=48.10  Aligned_cols=126  Identities=10%  Similarity=0.012  Sum_probs=78.5

Q ss_pred             hhhhhhccccccc-ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFNL-PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~~-~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      +|.+.++++..-. +..+.-+.++|+|+||+.=.+ .|.+++++..|++++|..+...+=.++-..... ++++.+|..+
T Consensus         2 IG~~~plsG~~a~~G~~~~~g~~la~~~iNa~GGI-~Gr~ielv~~D~~~~p~~a~~~a~~Li~~~~V~-~i~~~~S~~~   79 (351)
T cd06334           2 VGLLADRTGPTAFVGIPYAAGFADYFKYINEDGGI-NGVKLEWEECDTGYEVPRGVECYERLKGEDGAV-AFQGWSTGIT   79 (351)
T ss_pred             CCccccCCCcccccChhHHHHHHHHHHHHHHcCCc-CCeEEEEEEecCCCCcHHHHHHHHHHhccCCcE-EEecCcHHHH
Confidence            5777778775543 566788899999999988554 699999999999999999887765554442332 3344344444


Q ss_pred             eehhhhhhcccceee------------cccCceEEeeeh-----hHHHHHHHHHhc-----ceEeecceecc
Q psy8319         230 TTVAEAAKMWNLVVK------------KVEPWKLYTMVT-----GLLSIDLVILLC-----WQFYDPLQRIT  279 (330)
Q Consensus       230 ~~va~~~~~w~~~~~------------~~~~~~l~~~v~-----~~~~v~li~~~~-----W~~v~~~~~~~  279 (330)
                      ..+.......++|..            ..+++ .+++.+     ...+++.+..-.     .++++.++.+.
T Consensus        80 ~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~~-~Fr~~~~~~~~~~~l~~~~~~~~~~~~~~~kvaiv~~~~  150 (351)
T cd06334          80 EALIPKIAADKIPLMSGSYGATLADDGAVFPY-NFPVGPTYSDQARALVQYIAEQEGGKLKGKKIALVYHDS  150 (351)
T ss_pred             HHhhHHHhhcCCcEEecccchhhccCCCCCCe-eeeCCCCHHHHHHHHHHHHHHhcccCCCCCeEEEEeCCC
Confidence            444444444555542            11344 344433     234555555444     47777776643

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor

Probab=94.50  E-value=0.23  Score=48.03  Aligned_cols=119  Identities=13%  Similarity=0.074  Sum_probs=68.4

Q ss_pred             hhhhhhhhcccccccccchHHHHHHHHHhhhcCCCCCC-----CceEEEEeecCCcCCchhHHHHHHhhhccccEEEEe-
Q psy8319         149 MLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLP-----GFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLL-  222 (330)
Q Consensus       149 iliG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~-----gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i-  222 (330)
                      +-+|++++.       ..+.-+.++|+|.+|++.....     |.++++     .+++......+...+..+-....++ 
T Consensus        20 i~IG~i~~~-------~~~~~~~~~Ai~~~N~~~~~~~~~~l~~~~i~~-----~~~~~~~a~~~~~~Li~~~V~aii~~   87 (377)
T cd06379          20 VNIGAVLSN-------KKHEQEFKEAVNAANVERHGSRKIKLNATTITH-----DPNPIQTALSVCEQLISNQVYAVIVS   87 (377)
T ss_pred             EEEeEEecc-------hhHHHHHHHHHHHHhhhhcCCcceeeccceEee-----cCChhhHHHHHHHHHhhcceEEEEEe
Confidence            445766651       3567899999999998654333     333444     2455443333333333332222222 


Q ss_pred             ecccce----eeehhhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceeccc
Q psy8319         223 AGCSTV----CTTVAEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRITE  280 (330)
Q Consensus       223 ~~cs~~----~~~va~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~~  280 (330)
                      +.||+.    +..++..+..|++|+..            .+++ ++++.+     +.++++++.++.|+.++.++++..
T Consensus        88 ~~~ss~~~~~~~~v~~~~~~~~iP~Is~~a~~~~ls~~~~~~~-~~R~~psd~~~~~a~~~~l~~~~w~~vaii~~~~~  165 (377)
T cd06379          88 HPPTSNDHLTPTSVSYTAGFYRIPVVGISTRDSIFSDKNIHLS-FLRTVPPYSHQADVWLEMLRSFKWNKVILLVSDDH  165 (377)
T ss_pred             CCCCCcccccHHHHHHHhhCCCCcEEecccCCccccCcccccc-EEEecCCHHHHHHHHHHHHHHcCCeEEEEEEEcCc
Confidence            343432    22345556677887621            2455 444443     457889999999999999988653

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore

>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily

Probab=94.50  E-value=0.29  Score=44.29  Aligned_cols=126  Identities=17%  Similarity=0.163  Sum_probs=81.1

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      +|.+++.++... .+....-++++|++++|++- ...|.++++...|+++++..+...+-..+.. ....++++.|+...
T Consensus         2 ig~~~p~sg~~~~~~~~~~~g~~~a~~~~n~~g-g~~g~~v~~~~~d~~~~~~~~~~~~~~l~~~-~v~~iig~~~~~~~   79 (298)
T cd06268           2 IGVLLPLSGPLAALGEPVRNGAELAVEEINAAG-GILGRKIELVVEDTQGDPEAAAAAARELVDD-GVDAVIGPLSSGVA   79 (298)
T ss_pred             eeeeecCcCchhhcChhHHHHHHHHHHHHHhcC-CCCCeEEEEEEecCCCCHHHHHHHHHHHHhC-CceEEEcCCcchhH
Confidence            456666654222 23456778899999999885 4578999999999999988777666555544 33444456555444


Q ss_pred             eehhhhhhcccceeecc-----------cCceEEeeeh-----hHHHHHHHHHhc-ceEeecceecc
Q psy8319         230 TTVAEAAKMWNLVVKKV-----------EPWKLYTMVT-----GLLSIDLVILLC-WQFYDPLQRIT  279 (330)
Q Consensus       230 ~~va~~~~~w~~~~~~~-----------~~~~l~~~v~-----~~~~v~li~~~~-W~~v~~~~~~~  279 (330)
                      ..+.+....+++|....           .++ .+.+.+     ...+++.+.... |.+++.++...
T Consensus        80 ~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~  145 (298)
T cd06268          80 LAAAPVAEEAGVPLISPGATSPALTGKGNPY-VFRTAPSDAQQAAALADYLAEKGKVKKVAIIYDDY  145 (298)
T ss_pred             HhhHHHHHhCCCcEEccCCCCcccccCCCce-EEEcccCcHHHHHHHHHHHHHhcCCCEEEEEEcCC
Confidence            44555666677765221           223 333332     346677777777 99999887643

Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC

>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional

Probab=94.21  E-value=0.22  Score=48.32  Aligned_cols=128  Identities=16%  Similarity=0.108  Sum_probs=81.9

Q ss_pred             hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319         149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST  227 (330)
Q Consensus       149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~  227 (330)
                      +.||.+.++++..- .+.......++|+|+||+.-.+ .|.+++++..|++.+|..+....=..+ ..-...++.+.+|.
T Consensus        26 I~IG~l~plSG~~a~~G~~~~~g~~~av~~iNa~GGi-~G~~ielv~~D~~~~p~~a~~~~~~Li-~~~V~~iiG~~~s~  103 (369)
T PRK15404         26 IKIAIVGPMSGPVAQYGDMEFTGARQAIEDINAKGGI-KGDKLEGVEYDDACDPKQAVAVANKVV-NDGIKYVIGHLCSS  103 (369)
T ss_pred             eEEEEeecCCCcchhcCHhHHHHHHHHHHHHHhcCCC-CCeEEEEEeecCCCCHHHHHHHHHHHH-hCCceEEEcCCCch
Confidence            68899998887654 3556788899999999987554 589999999999999988776554444 44333333444444


Q ss_pred             eeeehhhhhhcccceeec-----------ccCceEEeeehh-----HHHHHH-HHHhcceEeecceecc
Q psy8319         228 VCTTVAEAAKMWNLVVKK-----------VEPWKLYTMVTG-----LLSIDL-VILLCWQFYDPLQRIT  279 (330)
Q Consensus       228 ~~~~va~~~~~w~~~~~~-----------~~~~~l~~~v~~-----~~~v~l-i~~~~W~~v~~~~~~~  279 (330)
                      .+..++......+++...           -+++ ++++...     ..+++. .....|..++.++++.
T Consensus       104 ~~~a~~~~~~~~~ip~i~~~s~~~~l~~~~~~~-~fr~~~~~~~~~~~~~~~~~~~~~~k~va~i~~d~  171 (369)
T PRK15404        104 STQPASDIYEDEGILMITPAATAPELTARGYQL-IFRTIGLDSDQGPTAAKYILEKVKPKRIAVLHDKQ  171 (369)
T ss_pred             hHHHhHHHHHHCCCeEEecCCCCHHHhcCCCce-EEeCCCCcHHHHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            444444555445554421           1233 4444321     234443 3445889998887753

>KOG1054|consensus

Probab=94.12  E-value=0.07  Score=54.23  Aligned_cols=51  Identities=24%  Similarity=0.470  Sum_probs=39.7

Q ss_pred             HHHHHHHHHhcceEEeeeeeEEEccCCCcce-eEEEEEeeCCcEEEEEEEEC
Q psy8319          21 IADDIYAAINSTQFTGVSGDVAFSSQGDRIA-LTQIEQVINGSYTKLGFYDT   71 (330)
Q Consensus        21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~-~y~I~q~q~~~~v~VG~y~~   71 (330)
                      -+.++-+.+++|.++|.||+++||..|.|.. ..+|+.+..+...++|.|+.
T Consensus       343 qG~~I~ralk~v~~eGLTGniqFd~~G~R~Nyt~~i~elk~~~~rk~~~W~e  394 (897)
T KOG1054|consen  343 QGIDIERALKQVQVEGLTGNIQFDKYGRRTNYTIDIVELKSNGSRKVGYWNE  394 (897)
T ss_pred             cchhHHHHHHheeecccccceeecccCccccceEEEEEeccCCcceeeeecc
Confidence            4567788999999999999999999988753 34566666555678888864

>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]

Probab=93.91  E-value=0.12  Score=50.24  Aligned_cols=129  Identities=16%  Similarity=0.165  Sum_probs=87.4

Q ss_pred             hhhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccc
Q psy8319         148 IMLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCS  226 (330)
Q Consensus       148 ~iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs  226 (330)
                      .|.+|.+.++++..- ++..-.-.+++|+|+||+.-. ..|..++++..|.+|++..+...+=..+..+-...++++-||
T Consensus        10 ~IkIGv~~plsG~~A~~G~~~~~ga~lAv~~iNa~Gg-i~G~~velv~~D~~~dp~~a~~~A~~li~~~~V~~vvG~~~S   88 (366)
T COG0683          10 TIKIGVVLPLSGPAAAYGQQIKNGAELAVEEINAAGG-ILGRKVELVVEDDASDPATAAAVARKLITQDGVDAVVGPTTS   88 (366)
T ss_pred             ceEEEEEecCCchhhhhChHHHHHHHHHHHHHhhhCC-cCCceEEEEEecCCCChHHHHHHHHHHHhhcCceEEEEeccC
Confidence            467888888877654 355556788999999998877 456569999999999999999998887776777777778888


Q ss_pred             ceeeehhhhhhcccceee------------cccCceEEeeeh-----hHHHHHHHH-HhcceEeecceec
Q psy8319         227 TVCTTVAEAAKMWNLVVK------------KVEPWKLYTMVT-----GLLSIDLVI-LLCWQFYDPLQRI  278 (330)
Q Consensus       227 ~~~~~va~~~~~w~~~~~------------~~~~~~l~~~v~-----~~~~v~li~-~~~W~~v~~~~~~  278 (330)
                      .++..+......-+++..            ...++ .+++.+     ...+++.+. .....++..++..
T Consensus        89 ~~~~a~~~v~~~~~i~~i~p~st~~~~~~~~~~~~-vfr~~~~~~~q~~~~~~~l~~~~~~k~v~ii~~~  157 (366)
T COG0683          89 GVALAASPVAEEAGVPLISPSATAPQLTGRGLKPN-VFRTGPTDNQQAAAAADYLVKKGGKKRVAIIGDD  157 (366)
T ss_pred             cccccchhhHhhcCceEEeecCCCCcccccccccc-eEEecCChHHHHHHHHHHHHHhcCCcEEEEEeCC
Confidence            777665554444333331            11222 555554     233444443 5555567776653

>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type

Probab=93.22  E-value=0.11  Score=50.56  Aligned_cols=83  Identities=18%  Similarity=0.165  Sum_probs=60.2

Q ss_pred             hhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce
Q psy8319         150 LVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV  228 (330)
Q Consensus       150 liG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~  228 (330)
                      .||.+.++++..- .+..+.-.+++|+|.||++-.+ .|.+++++..|++++|..+...+=..+......+++++.+|..
T Consensus         2 kIG~~~plSG~~a~~G~~~~~G~~lAv~~iNa~GGi-~Gr~ielv~~D~~~~p~~a~~~a~~li~~d~v~~viG~~~S~~   80 (374)
T TIGR03669         2 KLGVLEDRSGNFALVGTPKWHASQLAIEEINKSGGI-LGRQIELIDPDPQSDNERYQELTRRLLNRDKVDALWAGYSSAT   80 (374)
T ss_pred             EEEEEeCCCCCchhccHHHHHHHHHHHHHHHhcCCC-CCceeEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEcCCchHH
Confidence            4677777777654 3556778899999999988665 4899999999999999988877766665444444445555554


Q ss_pred             eeehh
Q psy8319         229 CTTVA  233 (330)
Q Consensus       229 ~~~va  233 (330)
                      +..+.
T Consensus        81 ~~A~~   85 (374)
T TIGR03669        81 REAIR   85 (374)
T ss_pred             HHHHH
Confidence            43333

Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.

>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene

Probab=93.09  E-value=0.48  Score=44.54  Aligned_cols=125  Identities=13%  Similarity=0.071  Sum_probs=78.3

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      ||.++++++.+. .+..+.-++++|++++|.   -..|..++++..|+++++..+...+-..+.....+..+++.+|...
T Consensus         2 IG~l~p~sG~~a~~g~~~~~g~~~a~~~~~~---~i~G~~i~l~~~D~~~~~~~~~~~~~~lv~~~~v~~iig~~~s~~~   78 (336)
T cd06360           2 VGLLLPYSGTYAALGEDITRGFELALQEAGG---KLGGREVEFVVEDDEAKPDVAVEKARKLIEQDKVDVVVGPVHSGEA   78 (336)
T ss_pred             eEEEEecccchHhhcHhHHHHHHHHHHHhCC---CcCCEEEEEEEcCCCCChHHHHHHHHHHHHHhCCcEEEccCccHhH
Confidence            466677655443 234567788999999863   2469999999999999998887666555554455555556555443


Q ss_pred             eehhhhhhcccceeec-------c-----cCceEEeeeh----hHHHHHHHHHhcceEeecceec
Q psy8319         230 TTVAEAAKMWNLVVKK-------V-----EPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRI  278 (330)
Q Consensus       230 ~~va~~~~~w~~~~~~-------~-----~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~  278 (330)
                      ..........++|...       +     +|+.++....    ...+.+.+...+|+.++.++.+
T Consensus        79 ~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~v~~l~~~  143 (336)
T cd06360          79 LAMVKVLREPGTPLINPNAGADDLTGRLCAPNFFRTSFSNAQWAAPMGKYAADDGYKKVVTVAWD  143 (336)
T ss_pred             HHHHHHHHhcCceEEecCCCCccccccCCCCcEEEEeCchHHHHHHHHHHHHHcCCCeEEEEecc
Confidence            3323333334454421       1     2554433333    3456777777789999988654

This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.

>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes

Probab=92.84  E-value=0.53  Score=44.07  Aligned_cols=124  Identities=13%  Similarity=0.085  Sum_probs=77.1

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      ||.+++.++... .+.....++++|++.+|.   ...|.++++++.|+++++..+...+=..+..+....++++.||...
T Consensus         2 IG~~~~~sg~~~~~g~~~~~g~~~a~~~~~~---~i~G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~~   78 (333)
T cd06332           2 IGLLTTLSGPYAALGQDIRDGFELALKQLGG---KLGGRPVEVVVEDDELKPDVAVQAARKLIEQDKVDVVVGPVFSNVA   78 (333)
T ss_pred             eEEEeeccCchHhhhHHHHHHHHHHHHHhCC---CcCCeEEEEEEecCCCCHHHHHHHHHHHHHHcCCcEEEcCCccHHH
Confidence            466666655443 234567889999999983   3568999999999999998877655444444244444455555443


Q ss_pred             eehhhhhhcccceeecc------------cCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319         230 TTVAEAAKMWNLVVKKV------------EPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI  278 (330)
Q Consensus       230 ~~va~~~~~w~~~~~~~------------~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~  278 (330)
                      ..........++|....            .|+ .+++.+     ...+++.+...+|++++.+...
T Consensus        79 ~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~l~~~g~~~v~il~~~  143 (333)
T cd06332          79 LAVVPSLTESGTFLISPNAGPSDLAGKLCSPN-FFRTSWQNDQVHEAMGKYAADKGYKKVVIIAPD  143 (333)
T ss_pred             HHHHHHHhhcCCeEEecCCCCccccccCCCCc-EEEeeCChHHhHHHHHHHHHHhCCceEEEEecC
Confidence            33333333444454211            344 333333     3466777777789999988653

This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.

>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs)

Probab=92.61  E-value=0.15  Score=48.24  Aligned_cols=33  Identities=39%  Similarity=0.699  Sum_probs=29.4

Q ss_pred             eEEEccCCCcceeEEEEEeeC----CcEEEEEEEECC
Q psy8319          40 DVAFSSQGDRIALTQIEQVIN----GSYTKLGFYDTQ   72 (330)
Q Consensus        40 ~V~Fd~nGdr~~~y~I~q~q~----~~~v~VG~y~~~   72 (330)
                      .|.||++|||.+.|+|.++|.    +.+++||.|++.
T Consensus       304 ~v~f~~~gd~~~~~~i~~~~~~~~~~~~~~vg~~~~~  340 (348)
T cd06350         304 EVKFDENGDRLASYDIINWQIFPGGGGFVKVGFWDPQ  340 (348)
T ss_pred             EEEecCCCCcccceeEEEEEEcCCcEEEEEEEEEcCC
Confidence            699999999999999999985    468999999863

Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr

>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen

Probab=92.56  E-value=0.32  Score=46.41  Aligned_cols=119  Identities=14%  Similarity=0.044  Sum_probs=71.4

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      +|.++++++..- ++....-++++|++++|       |..++++..|+++ +..+...+=..+ .+...+++++.+|...
T Consensus         2 IG~l~plsG~~a~~g~~~~~g~~lA~~~in-------G~~i~l~~~D~~~-~~~a~~~~~~li-~~~V~~iiG~~~s~~~   72 (336)
T cd06339           2 IALLLPLSGPLASVGQAIRNGFLAALYDLN-------GASIELRVYDTAG-AAGAAAAARQAV-AEGADIIVGPLLKENV   72 (336)
T ss_pred             eEEEEcCCCcchHHHHHHHHHHHHHHHhcc-------CCCceEEEEeCCC-cccHHHHHHHHH-HcCCCEEEccCCHHHH
Confidence            466666665432 24556778999999999       8899999999999 887776665544 3333344556666543


Q ss_pred             eehhhhhhcccceeecc--------cCceEEeeeh----hHHHHHHHHHhcceEeecceec
Q psy8319         230 TTVAEAAKMWNLVVKKV--------EPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRI  278 (330)
Q Consensus       230 ~~va~~~~~w~~~~~~~--------~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~  278 (330)
                      ...+......++|....        .++.++....    ...+++.+...++++++.++.+
T Consensus        73 ~a~~~~~~~~~ip~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~g~k~vaii~~~  133 (336)
T cd06339          73 AALAAAAAELGVPVLALNNDESVAAGPNLFYFGLSPEDEARRAAEYARSQGKRRPLVLAPD  133 (336)
T ss_pred             HHHHhhhccCCCCEEEccCCccccCCCCEEEecCChHHHHHHHHHHHHhcCccceEEEecC
Confidence            33323333344443211        3443332222    2345555555678888888653

This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).

>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein

Probab=92.48  E-value=0.17  Score=48.74  Aligned_cols=79  Identities=19%  Similarity=0.141  Sum_probs=56.8

Q ss_pred             hhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce
Q psy8319         150 LVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV  228 (330)
Q Consensus       150 liG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~  228 (330)
                      -||.+.++++..- .+....-++++|+++||++=.+. |..++++..|++++|..+...+=..+...-..+++++-+|..
T Consensus         2 ~IG~l~plsG~~a~~g~~~~~g~~lav~~iN~~GGi~-G~~i~l~~~Dd~~~p~~a~~~a~~Lv~~~~V~~iiG~~~S~~   80 (359)
T TIGR03407         2 KVGILHSLSGTMAISETTLKDAELMAIEEINASGGVL-GKKIEPVVEDGASDWPTFAEKARKLITQDKVAAVFGCWTSAS   80 (359)
T ss_pred             eEEEEeCCCCchhhcchhHHHHHHHHHHHHHhcCCCC-CcEEEEEEeCCCCCHHHHHHHHHHHHhhCCCcEEEcCCcHHH
Confidence            4677777776443 23455678999999999886654 899999999999999998877756665444444445555544


Q ss_pred             e
Q psy8319         229 C  229 (330)
Q Consensus       229 ~  229 (330)
                      +
T Consensus        81 ~   81 (359)
T TIGR03407        81 R   81 (359)
T ss_pred             H
Confidence            4

Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.

>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF)

Probab=92.30  E-value=0.21  Score=47.44  Aligned_cols=91  Identities=15%  Similarity=0.079  Sum_probs=61.3

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      ||.+.++++..- .+..+.-..++|+|.||++-. ..|.+++++..|++++|..+....=..+...-....+++.+|..+
T Consensus         2 IG~~~~lSG~~a~~G~~~~~g~~la~~~iNa~gG-i~Gr~v~lv~~D~~~~p~~a~~~~~~Li~~~~V~aiiG~~~s~~~   80 (334)
T cd06356           2 VGSLEDRSGNFALYGTPKVHATQLAVDEINASGG-ILGREVELVDYDTQSDNERYQQYAQRLALQDKVDVVWGGISSASR   80 (334)
T ss_pred             eEEEecCCCchhhccHHHHHHHHHHHHHHHhcCC-CCCceEEEEEECCCCCHHHHHHHHHHHHHhCCCCEEEeCcchHHH
Confidence            566677766543 255677889999999998755 468999999999999998888777666654434444456555544


Q ss_pred             eehhhhhhcccce
Q psy8319         230 TTVAEAAKMWNLV  242 (330)
Q Consensus       230 ~~va~~~~~w~~~  242 (330)
                      .........-+++
T Consensus        81 ~a~~~~~~~~~vp   93 (334)
T cd06356          81 EAIRPIMDRTKQL   93 (334)
T ss_pred             HHHHHHHHhcCce
Confidence            3333333333444

This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.

>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional

Probab=92.02  E-value=0.2  Score=48.67  Aligned_cols=40  Identities=13%  Similarity=0.174  Sum_probs=34.8

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEeeCC
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVING   61 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q~~   61 (330)
                      ++.|.+.|++.+|.|++|++.||++||+. ..|.|.||+.+
T Consensus       322 ~~~l~~al~~~~~~~~~G~~~~~~~g~~~~~~~~i~~~~~~  362 (369)
T PRK15404        322 PAKVAKYLKANTFDTVIGPLSWDEKGDLKGFEFGVFEWHAD  362 (369)
T ss_pred             HHHHHHHHHhCCCCcceEeeEECCCCCcccCCEEEEEEEcC
Confidence            45788899999999999999999999974 67899999954

>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors

Probab=91.86  E-value=0.088  Score=51.33  Aligned_cols=36  Identities=14%  Similarity=0.234  Sum_probs=30.4

Q ss_pred             HHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEeeC
Q psy8319          24 DIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVIN   60 (330)
Q Consensus        24 ~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~   60 (330)
                      .+.++|+.++|+|.||+|.||++|- ..+|++--|+.
T Consensus       325 ~~~~~~k~~~~~gltG~i~f~~~g~-R~~~~l~~~~~  360 (368)
T cd06383         325 SPFNGSSEIKFEMLAGRVAIDEGSS-VSTKTIGSWSA  360 (368)
T ss_pred             ccccCccceeEeeecCeEEEecCce-eeeeeeeeEec
Confidence            8899999999999999999999775 46677766653

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.

>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family

Probab=88.15  E-value=0.88  Score=43.76  Aligned_cols=72  Identities=21%  Similarity=0.229  Sum_probs=53.9

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLA  223 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~  223 (330)
                      ||.+.++++..- .+....-+.+||+++||++-.+ .|.+++++..|++.+|..+...+=.++-.+....++++
T Consensus         2 IG~~~plSG~~a~~g~~~~~g~~la~~~iN~~GGi-~G~~ielv~~D~~~~p~~a~~~a~~li~~~~V~aiiG~   74 (360)
T cd06357           2 VGVLFSRTGVTAAIERSQRNGALLAIEEINAAGGV-LGRELEPVEYDPGGDPDAYRALAERLLREDGVRVIFGC   74 (360)
T ss_pred             eEEEEcCCCCchhccHHHHHHHHHHHHHHhhcCCC-CCeEEEEEEECCCCCHHHHHHHHHHHHhhCCCcEEEeC
Confidence            566777766543 2566678899999999988553 58999999999999999998887777765444444444

This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.

>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2

Probab=87.92  E-value=3.2  Score=40.35  Aligned_cols=109  Identities=9%  Similarity=-0.066  Sum_probs=65.1

Q ss_pred             HHHHHHHHhhhcCCCCCCCce-EEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhcccceeec--
Q psy8319         169 PAAKLALEDVNNATDLLPGFK-LQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKK--  245 (330)
Q Consensus       169 ~~~~~A~~~iN~~~~ll~gf~-l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~~--  245 (330)
                      .+..+|.+.+|+.  .+.+.+ ++++..|.++++..+...+-..+-. -....++|.+|..+..++......++|...  
T Consensus        17 f~~ala~~~iN~~--gg~~~~~i~~v~~dd~~d~~~a~~~~c~Li~~-gV~AI~G~~~s~~~~av~~i~~~~~IP~Is~~   93 (363)
T cd06381          17 FAVAVIDLNINEQ--ILQTEKITLSISFIDLNNHFDAVQEACDLMNQ-GILALVTSTGCASAIALQSLTDAMHIPHLFIQ   93 (363)
T ss_pred             HHHHHHHhhcccc--ccCCccceeeeEeecCCChHHHHHHHHHHHhc-CcEEEEecCChhHHHHHHHHhhCCCCCEEEee
Confidence            4445555666654  335445 5667899999999998888777654 332233465444444445544444555421  


Q ss_pred             ------------------ccCceEEeee---hhHHHHHHHHHhcceEeecceeccc
Q psy8319         246 ------------------VEPWKLYTMV---TGLLSIDLVILLCWQFYDPLQRITE  280 (330)
Q Consensus       246 ------------------~~~~~l~~~v---~~~~~v~li~~~~W~~v~~~~~~~~  280 (330)
                                        ..++.+....   ...++.+++..++|+.++.+++...
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~f~~rp~~~~~~ai~~lv~~~~wkkvavly~~d~  149 (363)
T cd06381          94 RGYGGSPRTACGLNPSPRGQQYTLALRPPVRLNDVMLRLVTEWRWQKFVYFYDNDY  149 (363)
T ss_pred             cCcCCCcccccccCCCcccceeEEEEeccHHHHHHHHHHHHhCCCeEEEEEEECCc
Confidence                              1112111111   2467788999999999999887553

This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G

>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors

Probab=87.87  E-value=0.83  Score=42.79  Aligned_cols=34  Identities=24%  Similarity=0.526  Sum_probs=29.4

Q ss_pred             eeeEEEccCCCcce-eEEEEEeeCCcEEEEEEEEC
Q psy8319          38 SGDVAFSSQGDRIA-LTQIEQVINGSYTKLGFYDT   71 (330)
Q Consensus        38 sG~V~Fd~nGdr~~-~y~I~q~q~~~~v~VG~y~~   71 (330)
                      ||+++||++|+|.. .++|+++.++...+||.|+.
T Consensus       285 tg~~~f~~~g~~~~~~~~i~~~~~~~~~~~g~W~~  319 (324)
T cd06368         285 TGRIQFDENGQRSNFTLDILELKEGGLRKVGTWNP  319 (324)
T ss_pred             eeeeEeCCCCcCcceEEEEEEEcCCCceEEEEECC
Confidence            99999999999864 67888888777899999975

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors

>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system

Probab=84.19  E-value=6  Score=38.20  Aligned_cols=110  Identities=18%  Similarity=0.108  Sum_probs=67.1

Q ss_pred             cchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccceeeehhhhhhcccceee
Q psy8319         165 FACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVK  244 (330)
Q Consensus       165 ~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~  244 (330)
                      ..+.-+++||+|+||+.=.+ .|.+++++..|. ++|..+.+.+=..+ ..-...++++.+|.++..+...+...+++..
T Consensus        11 ~~~~~ga~lAveeiNaaGGv-~G~~ielv~~D~-~~p~~a~~~a~~Li-~~~V~~vvG~~~S~~~~Av~~~a~~~~vp~i   87 (347)
T TIGR03863        11 DRGLDGARLAIEDNNTTGRF-LGQTFTLDEVAV-RTPEDLVAALKALL-AQGVRFFVLDLPAAALLALADAAKAKGALLF   87 (347)
T ss_pred             chHHHHHHHHHHHHHhhCCc-CCceEEEEEccC-CCHHHHHHHHHHHH-HCCCCEEEecCChHHHHHHHHHHHhCCcEEE
Confidence            34567899999999977554 488999998885 77777766665554 3334445556666555555555555555441


Q ss_pred             c------------ccCceEEeeeh----hHHHHHHHHHhcceEeeccee
Q psy8319         245 K------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQR  277 (330)
Q Consensus       245 ~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~  277 (330)
                      .            -.+|.++....    ...+++.+..-..+++..++.
T Consensus        88 ~~~a~~~~lt~~~c~~~~Fr~~~~~~~~~~ala~~~~~~g~kkvaii~~  136 (347)
T TIGR03863        88 NAGAPDDALRGADCRANLLHTLPSRAMLADALAQYLAAKRWRRILLIQG  136 (347)
T ss_pred             eCCCCChHHhCCCCCCCEEEecCChHhHHHHHHHHHHHcCCCEEEEEeC
Confidence            1            12454443333    234455554456777777764

Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.

>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=83.16  E-value=2.7  Score=40.31  Aligned_cols=80  Identities=13%  Similarity=0.131  Sum_probs=54.8

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCC-CCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDL-LPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV  228 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~l-l~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~  228 (330)
                      +|.+.++++..- .+....-..++|.+.||.--.+ ..++.++++..|++++|..+...+=..+-..-..+++++..|..
T Consensus         2 IG~~~~lSG~~a~~G~~~~~~~~~~~~~in~g~~i~G~~~~i~lv~~D~~~~p~~a~~~a~~li~~d~v~~iiG~~~s~~   81 (357)
T cd06337           2 IGYVSPRTGPLAAFGEADPWVLETMRSALADGLVVGGSTYEVEIIVRDSQSNPNRAGLVAQELILTDKVDLLLAGGTPDT   81 (357)
T ss_pred             cceeccCcCcccccccchHHHHHHHHHHhcCCeeECCceeEEEEEEecCCCCHHHHHHHHHHHHhccCccEEEecCCcch
Confidence            566777776553 3555667889999999854322 23578999999999999999988877776533444445544444


Q ss_pred             ee
Q psy8319         229 CT  230 (330)
Q Consensus       229 ~~  230 (330)
                      +.
T Consensus        82 ~~   83 (357)
T cd06337          82 TN   83 (357)
T ss_pred             hh
Confidence            33

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein

Probab=83.09  E-value=1.9  Score=41.47  Aligned_cols=44  Identities=16%  Similarity=0.286  Sum_probs=33.6

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEcc-CCCcceeEEEEEee-CCcEEE
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSS-QGDRIALTQIEQVI-NGSYTK   65 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~-nGdr~~~y~I~q~q-~~~~v~   65 (330)
                      ++.+.+.|++++|.++.|+++|++ +++....+.+.|++ +|+++.
T Consensus       300 ~~~i~~al~~~~~~~~~G~i~f~~~~~~~~~~~~~~~~~~~g~~~~  345 (359)
T TIGR03407       300 VDAVRDAAIGIEFDAPEGKVKVDGKNHHLTKTVRIGEIRADGQFDV  345 (359)
T ss_pred             HHHHHHHhcCCcccCCCccEEEeCCCCeeeeeeEEEEEccCCCEEE
Confidence            456788899999999999999997 44444566778886 676654

Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.

>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF)

Probab=83.06  E-value=1.8  Score=41.30  Aligned_cols=45  Identities=18%  Similarity=0.340  Sum_probs=33.7

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEccCC-CcceeEEEEEee-CCcEEEE
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSSQG-DRIALTQIEQVI-NGSYTKL   66 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~nG-dr~~~y~I~q~q-~~~~v~V   66 (330)
                      ++.+.+.|++++|.|..|+++||+++ .....+.+.|++ +|+++.|
T Consensus       299 ~~~i~~aL~~~~~~~~~g~~~f~~~~~~~~~~~~i~~~~~~g~~~~v  345 (348)
T cd06355         299 VDKVRAALPGQSFDAPEGPVTVDPANHHLWKPVRIGRIQADGQFEIV  345 (348)
T ss_pred             HHHHHHHhccCcccCCCcceEeecCCCeeeeeeEEEEEcCCCcEEEE
Confidence            35678889999999999999999843 334556788886 6766553

This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.

>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A

Probab=82.96  E-value=1.9  Score=40.52  Aligned_cols=128  Identities=16%  Similarity=0.080  Sum_probs=74.2

Q ss_pred             hhhhhhhccccccc-ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce
Q psy8319         150 LVGIAFCMSLNFNL-PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV  228 (330)
Q Consensus       150 liG~ll~~~~~~~~-~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~  228 (330)
                      -+|.+.++++..-. +..-.-.+++|++++|++-.+ .|..++++..|++.++..+...+=..+..+...+++++.+|..
T Consensus         3 ~IG~~~~~sG~~a~~g~~~~~g~~~a~~~~N~~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~l~~~~~v~~vvg~~~s~~   81 (343)
T PF13458_consen    3 KIGVLVPLSGPFAPYGQDFLRGAELAVDEINAAGGI-NGRKIELVVYDDGGDPAQAVQAARKLIDDDGVDAVVGPLSSAQ   81 (343)
T ss_dssp             EEEEEE-SSSTTHHHHHHHHHHHHHHHHHHHHTTEE-TTEEEEEEEEE-TT-HHHHHHHHHHHHHTSTESEEEESSSHHH
T ss_pred             EEEEEECCCChhhhhhHHHHHHHHHHHHHHHHhCCc-CCccceeeeccCCCChHHHHHHHHHhhhhcCcEEEEecCCcHH
Confidence            46777777665532 334467789999999987323 4899999999999999998877766666565555555544444


Q ss_pred             eeehhhhhhcccceee--------cccCceEEeeeh----hHHHHHH-HHHhcceEeecceec
Q psy8319         229 CTTVAEAAKMWNLVVK--------KVEPWKLYTMVT----GLLSIDL-VILLCWQFYDPLQRI  278 (330)
Q Consensus       229 ~~~va~~~~~w~~~~~--------~~~~~~l~~~v~----~~~~v~l-i~~~~W~~v~~~~~~  278 (330)
                      ...+++....-+++..        ...++.++....    ...+++- .......+++.++..
T Consensus        82 ~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~iv~~~  144 (343)
T PF13458_consen   82 AEAVAPIAEEAGIPYISPSASSPSPDSPNVFRLSPSDSQQAAALAEYLAKKLGAKKVAIVYPD  144 (343)
T ss_dssp             HHHHHHHHHHHT-EEEESSGGGGTTTHTTEEESS--HHHHHHHHHHHHHHTTTTSEEEEEEES
T ss_pred             HHHHHHHHHhcCcEEEEeeccCCCCCCCcEEEEeccccHHHHHHHHHHHHHcCCcEEEEEecC
Confidence            4333333333233321        234453333322    2344554 334677888888754

...

>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs)

Probab=81.72  E-value=2  Score=39.82  Aligned_cols=34  Identities=24%  Similarity=0.458  Sum_probs=28.7

Q ss_pred             eeeEEEccCCCcce-eEEEEEee-CCcEEEEEEEEC
Q psy8319          38 SGDVAFSSQGDRIA-LTQIEQVI-NGSYTKLGFYDT   71 (330)
Q Consensus        38 sG~V~Fd~nGdr~~-~y~I~q~q-~~~~v~VG~y~~   71 (330)
                      ||+++||++|.|.. .++|.+.+ +...++||.|+.
T Consensus       287 tg~i~f~~~g~r~~~~l~i~~l~~~~~~~~vg~W~~  322 (328)
T cd06351         287 TGTVSFDEDGVRSNFTLDIIELNRSRGWRKVGTWNG  322 (328)
T ss_pred             EeeEEECCCCcccceEEEEEEecCCCCceEEEEecC
Confidence            99999999999873 56888887 667899999973

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors

>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A

Probab=81.13  E-value=3.3  Score=38.83  Aligned_cols=42  Identities=21%  Similarity=0.351  Sum_probs=33.7

Q ss_pred             HHHHHHHHHhcceEEeeeeeEEEcc-CCCcceeEEEEEee-CCc
Q psy8319          21 IADDIYAAINSTQFTGVSGDVAFSS-QGDRIALTQIEQVI-NGS   62 (330)
Q Consensus        21 ~~~~l~~~l~~vsF~GisG~V~Fd~-nGdr~~~y~I~q~q-~~~   62 (330)
                      =++.+.+.|++++|.|..|++.|+. +|.....+.|.|++ +|+
T Consensus       300 ~~~~v~~al~~~~~~g~~g~~~~~~~~~~~~~~~~i~~v~~~G~  343 (343)
T PF13458_consen  300 DREAVREALESLKYDGLFGPISFDPPDHQANKPVYIVQVKSDGK  343 (343)
T ss_dssp             HHHHHHHHHHTSEEEETTEEEEEETTTSBEEEEEEEEEEETTTE
T ss_pred             CHHHHHHHHHhCCCcccccceEEeCCCCccccCeEEEEEecCCC
Confidence            3678889999999999999999975 44455678899998 663

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	330
4f11_A	433	Gamma-aminobutyric acid type B receptor subunit 2;	4e-20
4f11_A	433	Gamma-aminobutyric acid type B receptor subunit 2;	2e-17
1dp4_A	435	Atrial natriuretic peptide receptor A; periplasmic	6e-17
1dp4_A	435	Atrial natriuretic peptide receptor A; periplasmic	3e-10
1jdp_A	441	NPR-C, atrial natriuretic peptide clearance recept	4e-16
1jdp_A	441	NPR-C, atrial natriuretic peptide clearance recept	2e-12
3h6g_A	395	Glutamate receptor, ionotropic kainate 2; membrane	3e-10
3h6g_A	395	Glutamate receptor, ionotropic kainate 2; membrane	4e-05
3om0_A	393	Glutamate receptor, ionotropic kainate 5; membrane	2e-09
3om0_A	393	Glutamate receptor, ionotropic kainate 5; membrane	1e-06
3saj_A	384	Glutamate receptor 1; rossman fold, ION channel, m	2e-05
3saj_A	384	Glutamate receptor 1; rossman fold, ION channel, m	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3o21_A	389	Glutamate receptor 3; periplasmatic binding protei	8e-05
3hsy_A	376	Glutamate receptor 2; ligand-gated ION channel, sy	2e-04

>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A* Length = 433

 Score = 89.6 bits (222), Expect = 4e-20
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 8   GKTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLG 67
            + ++ F YT+  +   I  A+N T F GV+G V F + G+R+   +  Q  +    K+G
Sbjct: 341 HQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVFRN-GERMGTIKFTQFQDSREVKVG 399

Query: 68  FYDTQADNLTWFDRE-RWIGGKVPQDRT 94
            Y+  AD L   +   R+ G + P+D  
Sbjct: 400 EYNAVADTLEIINDTIRFQGSEPPKDDY 427

>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A* Length = 433

 Score = 81.5 bits (201), Expect = 2e-17
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 165 FACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLL-A 223
               PA +LA+E + N + LL  + L L   D+EC+   G    Y+ +   P  LM+   
Sbjct: 34  RGVLPAVELAIEQIRNES-LLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVFGG 92

Query: 224 GCSTVCTTVAEAAKMWNLVV 243
            C +V + +AE+ + WNLV 
Sbjct: 93  VCPSVTSIIAESLQGWNLVQ 112

>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A* Length = 435

 Score = 80.2 bits (197), Expect = 6e-17
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 9/101 (8%)

Query: 151 VGIAFCMSLNFNLPFA---CEPAAKLALEDVNNATDLLPGFKLQLHWNDSE-----CEPG 202
           V +   ++ N + P++     PA +LAL  V    DLLPG+ +++    SE     C   
Sbjct: 5   VAVVLPLT-NTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDT 63

Query: 203 LGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVV 243
                  +L + +   + L  GC      V      W + +
Sbjct: 64  AAPLAAVDLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPL 104

>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A* Length = 435

 Score = 59.8 bits (144), Expect = 3e-10
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 23  DDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIE--QVINGSYTKLGFYDTQADNLTWFD 80
           ++I   + +  F GV+G +     GDR     +       G++  +  Y+  +  L    
Sbjct: 346 ENITQRMWNRSFQGVTGYLKIDRNGDRDTDFSLWDMDPETGAFRVVLNYNGTSQELMAVS 405

Query: 81  RER--WIGGKVPQDR 93
             +  W  G  P D 
Sbjct: 406 EHKLYWPLGYPPPDV 420

>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* Length = 441

 Score = 77.5 bits (190), Expect = 4e-16
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 9/102 (8%)

Query: 151 VGIAFCMSLNFNLPFA---CEPAAKLALEDVNNAT----DLLPGFKLQLHWNDSECEPGL 203
           + +   +  + +  F+     PA + AL  V         L PG + Q+ + DS+C    
Sbjct: 10  IEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRA 69

Query: 204 GASVMYNLLYNNPQKLMLLAG--CSTVCTTVAEAAKMWNLVV 243
             S++  +      K  L+ G  C      VA  A  W+L +
Sbjct: 70  LFSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPM 111

>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* Length = 441

 Score = 66.7 bits (162), Expect = 2e-12
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 24  DIYAAINSTQFTGVSGDVAFSSQGDRIA---LTQIEQVINGSYTKLGFYDTQADNLTWFD 80
            I     +  F G++G V+  + GDR     +  +  V  G+   +G Y  +        
Sbjct: 344 KIIQQTWNRTFEGIAGQVSIDANGDRYGDFSVIAMTDVEAGTQEVIGDYFGKEGRFEMRP 403

Query: 81  RER--WIGGKVPQDRTQI 96
             +  W   K+  D  +I
Sbjct: 404 NVKYPWGPLKLRIDENRI 421

>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A* Length = 395

 Score = 59.7 bits (144), Expect = 3e-10
 Identities = 12/74 (16%), Positives = 19/74 (25%)

Query: 168 EPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST 227
           E A + A+  +N    LLP   L              AS       +     +     S+
Sbjct: 23  ELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSS 82

Query: 228 VCTTVAEAAKMWNL 241
               V        +
Sbjct: 83  SANAVQSICNALGV 96

>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A* Length = 395

 Score = 43.9 bits (103), Expect = 4e-05
 Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 5   KKQGKTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAF-SSQGDRIALT-QIEQVINGS 62
           +    +L+   +          + I    + G++G + F  + G R      +  +    
Sbjct: 308 QMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEG 367

Query: 63  YTKLGFYDTQAD-NLTWFDRERW 84
             K+G +D  +  N+T   + + 
Sbjct: 368 LEKIGTWDPASGLNMTESQKGKL 390

>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A Length = 393

 Score = 57.5 bits (138), Expect = 2e-09
 Identities = 8/76 (10%), Positives = 26/76 (34%), Gaps = 2/76 (2%)

Query: 166 ACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGC 225
               A  LA E +N   ++    ++++   + + +     +     +       +L  G 
Sbjct: 20  GERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPKGVVSVL--GP 77

Query: 226 STVCTTVAEAAKMWNL 241
           S+   + +  + +   
Sbjct: 78  SSSPASASTVSHICGE 93

>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A Length = 393

 Score = 49.0 bits (116), Expect = 1e-06
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 9   KTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALT-QIEQVINGSYTKLG 67
           K L   +         +   +   ++ G++G V F+S+G R   T +I +     + ++G
Sbjct: 311 KPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIG 370

Query: 68  FYDTQADNLTWFDRERWIGGKVPQ 91
            + +    L        I   VP+
Sbjct: 371 VWYSN-RTLAMNATTLDILELVPR 393

>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus} Length = 384

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 20  EIADDIYAAINSTQFTGVSGDVAFSSQGDRIALT-QIEQVINGSYTKLGFYD 70
               DI  A+   +F G++G+V F+ +G R   T  + ++ +    K+G+++
Sbjct: 318 GQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWN 369

>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus} Length = 384

 Score = 42.8 bits (100), Expect = 9e-05
 Identities = 8/74 (10%), Positives = 19/74 (25%), Gaps = 6/74 (8%)

Query: 168 EPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST 227
             A + AL  +     LLP   + ++ +DS            +        +        
Sbjct: 25  HAAFRFALSQLTEPPKLLPQIDI-VNISDSFE----MTYRFCSQFSKGVYAI-FGFYERR 78

Query: 228 VCTTVAEAAKMWNL 241
               +       ++
Sbjct: 79  TVNMLTSFCGALHV 92

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 58/383 (15%), Positives = 104/383 (27%), Gaps = 108/383 (28%)

Query: 16  YTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKL--------- 66
            + +EI D I  + ++   T         S+ + +    +E+V+  +Y  L         
Sbjct: 46  LSKEEI-DHIIMSKDAVSGTLRLFWT-LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 67  ------GFYDTQADNLTWFDRERWIGGKVP--QDRTQIRKVLRTISVP--LVIC-M---- 111
                   Y  Q D L + D + +    V   Q   ++R+ L  +     ++I  +    
Sbjct: 104 QPSMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162

Query: 112 --WTVATV----GILFAVGLIIF--NI--CYRHRRVIASSHPVCNTIMLVGIAFCMSLNF 161
             W    V     +   +   IF  N+  C     V+     +   I     +     + 
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS-DHSS 221

Query: 162 NLPFACE---------------PAAKLALEDVNNATDLLPGFKLQ----LHWNDSECEPG 202
           N+                        L L +V NA      F L     L     +    
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA-KAWNAFNLSCKILLTTRFKQVTDF 280

Query: 203 LGASVMYNLLYNNPQK-------LMLLAGC-STVCTTVAEAAKMWNLVVKKVEPWKLYTM 254
           L A+   ++  ++            LL          +               P +L ++
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-------LTTNPRRL-SI 332

Query: 255 VTGLLSIDLVILLCWQFY-----DPLQRITENFPLETPPKSSADDIKISPE-LEHCESRN 308
           +   +   L     W  +     D L  I                I+ S   LE  E R 
Sbjct: 333 IAESIRDGLAT---WDNWKHVNCDKLTTI----------------IESSLNVLEPAEYRK 373

Query: 309 NNIWYGFFNRHLQVL--GVKIPE 329
               +      L V      IP 
Sbjct: 374 M---F----DRLSVFPPSAHIPT 389

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 42/310 (13%), Positives = 89/310 (28%), Gaps = 109/310 (35%)

Query: 40  DV-------AFSSQGDRIALT----QIEQVINGSYTK--------LGFYDTQADNLTWFD 80
           +V       AF+    +I LT    Q+   ++ + T         +     +  +L    
Sbjct: 252 NVQNAKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL--L- 307

Query: 81  RERWIGGKVPQDRTQIRKVLRTISVPLVICMWTVATVGILFAVGLIIFNICYRHRRVIAS 140
             +++  +      ++         P  + +     +      GL  ++  ++H      
Sbjct: 308 -LKYLDCRPQDLPREVLTTN-----PRRLSI-----IAESIRDGLATWDN-WKHVNCDKL 355

Query: 141 SHPVCNTIMLVGIAFCMSLNFNLPFACEPA------AKLAL--EDVNNATDLLPGFKLQL 192
           +                SLN  L    EPA       +L++     +     +P   L L
Sbjct: 356 TT-----------IIESSLN-VL----EPAEYRKMFDRLSVFPPSAH-----IPTILLSL 394

Query: 193 HWNDSECEPGLGASVMYNLLYNNPQKLM-LLAGCSTVCTTVAEAAKMWNLVVKKVEPWKL 251
            W D                 ++   ++  L   S              LV K+ +   +
Sbjct: 395 IWFDVI--------------KSDVMVVVNKLHKYS--------------LVEKQPKESTI 426

Query: 252 YTMVTGLLSIDLVILL-CWQFYDPLQRITENFPLETPPKSSADDIKISPELEHCESRNNN 310
                 + SI L + +     Y   + I +++    P    +DD+             + 
Sbjct: 427 S-----IPSIYLELKVKLENEYALHRSIVDHY--NIPKTFDSDDLIPPYL--------DQ 471

Query: 311 IWYGFFNRHL 320
            +Y     HL
Sbjct: 472 YFYSHIGHHL 481

>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A Length = 389

 Score = 42.9 bits (100), Expect = 8e-05
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 23  DDIYAAINSTQFTGVSGDVAFSSQGDRIALT-QIEQVINGSYTKLGFYD 70
            DI  A+   Q  G++G++ F + G R   T  + ++      K G+++
Sbjct: 324 IDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWN 372

>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A Length = 376

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 23  DDIYAAINSTQFTGVSGDVAFSSQGDRIALT-QIEQVINGSYTKLGFYD 70
            +I  A+   Q  G+SG++ F   G RI  T  I ++      K+G++ 
Sbjct: 318 VEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWS 366

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	330
4f11_A	433	Gamma-aminobutyric acid type B receptor subunit 2;	99.39
1dp4_A	435	Atrial natriuretic peptide receptor A; periplasmic	98.98
4gpa_A	389	Glutamate receptor 4; PBP fold, ligand-gated ION c	98.83
1jdp_A	441	NPR-C, atrial natriuretic peptide clearance recept	98.83
3ks9_A	496	Mglur1, metabotropic glutamate receptor 1; glutama	98.65
1jdp_A	441	NPR-C, atrial natriuretic peptide clearance recept	98.65
3qek_A	384	NMDA glutamate receptor subunit; amino terminal do	98.61
1dp4_A	435	Atrial natriuretic peptide receptor A; periplasmic	98.6
4f11_A	433	Gamma-aminobutyric acid type B receptor subunit 2;	98.58
2e4u_A	555	Metabotropic glutamate receptor 3; G-protein-coupl	98.54
3mq4_A	481	Mglur7, metabotropic glutamate receptor 7; glutama	98.54
2e4u_A	555	Metabotropic glutamate receptor 3; G-protein-coupl	98.52
3mq4_A	481	Mglur7, metabotropic glutamate receptor 7; glutama	98.52
3sm9_A	479	Mglur3, metabotropic glutamate receptor 3; structu	98.51
3sm9_A	479	Mglur3, metabotropic glutamate receptor 3; structu	98.49
3o21_A	389	Glutamate receptor 3; periplasmatic binding protei	98.34
3ks9_A	496	Mglur1, metabotropic glutamate receptor 1; glutama	98.32
3om0_A	393	Glutamate receptor, ionotropic kainate 5; membrane	98.28
4gpa_A	389	Glutamate receptor 4; PBP fold, ligand-gated ION c	98.26
3o21_A	389	Glutamate receptor 3; periplasmatic binding protei	98.15
3hsy_A	376	Glutamate receptor 2; ligand-gated ION channel, sy	98.11
3om0_A	393	Glutamate receptor, ionotropic kainate 5; membrane	98.1
3qek_A	384	NMDA glutamate receptor subunit; amino terminal do	98.1
3saj_A	384	Glutamate receptor 1; rossman fold, ION channel, m	97.96
3h6g_A	395	Glutamate receptor, ionotropic kainate 2; membrane	97.86
3qel_B	364	Glutamate [NMDA] receptor subunit epsilon-2; ION c	97.83
3h6g_A	395	Glutamate receptor, ionotropic kainate 2; membrane	97.81
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	97.75
3hsy_A	376	Glutamate receptor 2; ligand-gated ION channel, sy	97.68
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	97.58
3h5l_A	419	Putative branched-chain amino acid ABC transporter	97.55
3saj_A	384	Glutamate receptor 1; rossman fold, ION channel, m	97.47
3td9_A	366	Branched chain amino acid ABC transporter, peripl	97.43
4gnr_A	353	ABC transporter substrate-binding protein-branche	97.41
4evq_A	375	Putative ABC transporter subunit, substrate-bindi	97.29
3i45_A	387	Twin-arginine translocation pathway signal protei;	97.25
3n0x_A	374	Possible substrate binding protein of ABC transpo	97.05
3hut_A	358	Putative branched-chain amino acid ABC transporter	97.03
3h5l_A	419	Putative branched-chain amino acid ABC transporter	96.94
4f06_A	371	Extracellular ligand-binding receptor; PSI-biology	96.89
1usg_A	346	Leucine-specific binding protein; leucine-binding	96.88
4gnr_A	353	ABC transporter substrate-binding protein-branche	96.75
3td9_A	366	Branched chain amino acid ABC transporter, peripl	96.71
3ipc_A	356	ABC transporter, substrate binding protein (amino;	96.6
3lop_A	364	Substrate binding periplasmic protein; protein str	96.51
3hut_A	358	Putative branched-chain amino acid ABC transporter	96.49
3eaf_A	391	ABC transporter, substrate binding protein; PSI2,	96.48
3ipc_A	356	ABC transporter, substrate binding protein (amino;	96.46
4eyg_A	368	Twin-arginine translocation pathway signal; PSI-bi	96.44
4eyg_A	368	Twin-arginine translocation pathway signal; PSI-bi	96.44
3i09_A	375	Periplasmic branched-chain amino acid-binding Pro;	96.14
3n0w_A	379	ABC branched chain amino acid family transporter,	96.14
3lkb_A	392	Probable branched-chain amino acid ABC transporter	95.85
3ckm_A	327	YRAM (HI1655), LPOA; periplasmic-binding protein,	95.69
1usg_A	346	Leucine-specific binding protein; leucine-binding	95.63
4evq_A	375	Putative ABC transporter subunit, substrate-bindi	95.42
1pea_A	385	Amidase operon; gene regulator, receptor, binding	95.27
3lkb_A	392	Probable branched-chain amino acid ABC transporter	95.15
3snr_A	362	Extracellular ligand-binding receptor; structural	95.06
3sg0_A	386	Extracellular ligand-binding receptor; structural	94.36
3eaf_A	391	ABC transporter, substrate binding protein; PSI2,	94.35
3i45_A	387	Twin-arginine translocation pathway signal protei;	94.25
1pea_A	385	Amidase operon; gene regulator, receptor, binding	94.02
3i09_A	375	Periplasmic branched-chain amino acid-binding Pro;	93.75
3snr_A	362	Extracellular ligand-binding receptor; structural	93.47
4f06_A	371	Extracellular ligand-binding receptor; PSI-biology	93.19
3sg0_A	386	Extracellular ligand-binding receptor; structural	92.73
2h4a_A	325	YRAM (HI1655); perplasmic binding protein, lipopro	91.96
3n0x_A	374	Possible substrate binding protein of ABC transpo	90.9
3n0w_A	379	ABC branched chain amino acid family transporter,	89.98
3qel_B	364	Glutamate [NMDA] receptor subunit epsilon-2; ION c	88.76
3lop_A	364	Substrate binding periplasmic protein; protein str	81.86

>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*

Probab=99.39  E-value=8.6e-13  Score=127.84  Aligned_cols=86  Identities=31%  Similarity=0.581  Sum_probs=79.1

Q ss_pred             CCCCceecCChHHHHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEeeCCcEEEEEEEECCCCceeec-CccccCCC
Q psy8319           9 KTLKSFTYTNKEIADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGFYDTQADNLTWF-DRERWIGG   87 (330)
Q Consensus         9 ~~l~~f~y~~~~~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~~~~v~VG~y~~~~~~l~~~-~~i~W~~~   87 (330)
                      ..+++|+|++.+.+++|.++|++++|.|++|+|+| ++|||...|+|.|+|+|++++||.|+...+.|+++ +.|.|+++
T Consensus       342 ~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~~~~~~I~~~~~g~~~~VG~~~~~~~~l~~~~~~i~W~~~  420 (433)
T 4f11_A          342 QRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGERMGTIKFTQFQDSREVKVGEYNAVADTLEIINDTIRFQGS  420 (433)
T ss_dssp             CCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEEECEEEEEEEETTEEEEEEEEETTTTEEEECTTTCCCSSS
T ss_pred             CcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCceeeeEEEEEEECCceEEEEEEECCCCeEEEeCCceECCCC
Confidence            35889999999999999999999999999999999 89999999999999999999999999877789887 67999999


Q ss_pred             CCCCCccc
Q psy8319          88 KVPQDRTQ   95 (330)
Q Consensus        88 ~~P~s~~~   95 (330)
                      .||.|++.
T Consensus       421 ~~P~D~~~  428 (433)
T 4f11_A          421 EPPKDDYK  428 (433)
T ss_dssp             SCCCSSGG
T ss_pred             CCCCCccc
Confidence            99999863

>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*

Probab=98.98  E-value=8.5e-10  Score=106.50  Aligned_cols=74  Identities=20%  Similarity=0.325  Sum_probs=65.4

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEe--eCCcEEEEEEEECCCCceee-c-CccccCCCCCCCCccc
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQV--INGSYTKLGFYDTQADNLTW-F-DRERWIGGKVPQDRTQ   95 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~--q~~~~v~VG~y~~~~~~l~~-~-~~i~W~~~~~P~s~~~   95 (330)
                      +++|.++|++++|.|++|+|+||++||+.+.|+|.|+  ++|++++||.|+...+++.+ + +.|.|+++++|.|.+.
T Consensus       345 ~~~l~~~l~~~~f~g~~G~v~fd~~g~~~~~~~i~~~~~~~g~~~~vg~~~~~~~~l~~~~~~~i~W~~~~~P~~~p~  422 (435)
T 1dp4_A          345 GENITQRMWNRSFQGVTGYLKIDRNGDRDTDFSLWDMDPETGAFRVVLNYNGTSQELMAVSEHKLYWPLGYPPPDVPK  422 (435)
T ss_dssp             HHHHHHTTTTEEEEETTEEEEECTTSBBCCCEEEEEECTTTCCEEEEEEECTTTCCEEESTTCCCCCTTSSCCCSSCT
T ss_pred             HHHHHHHHhCceeeccceeEEECCCCCccceeEEEEecCCCCcEEEEEEecCCCceEEEcCCceeeCCCCCCCCCCCC
Confidence            5688899999999999999999999999999999999  56789999999976557887 5 6899999999999753

>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}

Probab=98.83  E-value=4.8e-09  Score=99.03  Aligned_cols=57  Identities=18%  Similarity=0.406  Sum_probs=50.4

Q ss_pred             HHHHHHHHHhcceEEeeeeeEEEccCCCcce-eEEEEEeeCCcEEEEEEEECCCCceee
Q psy8319          21 IADDIYAAINSTQFTGVSGDVAFSSQGDRIA-LTQIEQVINGSYTKLGFYDTQADNLTW   78 (330)
Q Consensus        21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~-~y~I~q~q~~~~v~VG~y~~~~~~l~~   78 (330)
                      .+.+|+++|++++|+|+||+|+||+||||.. .|+|+|+|++.+++||.|++.+ .|.+
T Consensus       320 ~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG~W~~~~-gl~~  377 (389)
T 4gpa_A          320 QGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMD-KLVL  377 (389)
T ss_dssp             THHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEEEEETTT-EEEE
T ss_pred             hHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEEEEEEEECCC-CeEE
Confidence            4678999999999999999999999999974 7999999988899999999764 4544

>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*

Probab=98.83  E-value=5.7e-09  Score=101.18  Aligned_cols=75  Identities=20%  Similarity=0.307  Sum_probs=52.4

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEee---CCcEEEEEEEECCCCceeec--CccccCCCCCCCCccce
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVI---NGSYTKLGFYDTQADNLTWF--DRERWIGGKVPQDRTQI   96 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q---~~~~v~VG~y~~~~~~l~~~--~~i~W~~~~~P~s~~~~   96 (330)
                      +++|.++|++++|.|++|+|+||++||+.+.|+|.|+|   +|++++||.|++..+.+++.  .++.|++++.|.+.+.+
T Consensus       342 ~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~~~~~I~~~~~~~~g~~~~VG~~~~~~~~~~~~~~~~i~w~g~~l~i~~~~i  421 (441)
T 1jdp_A          342 GGKIIQQTWNRTFEGIAGQVSIDANGDRYGDFSVIAMTDVEAGTQEVIGDYFGKEGRFEMRPNVKYPWGPLKLRIDENRI  421 (441)
T ss_dssp             HHHHHHHHSSEEEEETTEEEEECTTSBBCCEEEEEEEEETTTTEEEEEEEEETTTTEEEECC------------------
T ss_pred             HHHHHHHHhCCeeECCccceEECCCCCccccEEEEecccCCCCceEEEEEEcCCCCeEEECCCceeeCCCCCccCCCCCc
Confidence            56889999999999999999999999999999999997   46799999999877778775  47899998888776643

>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*

Probab=98.65  E-value=3.3e-08  Score=98.14  Aligned_cols=68  Identities=22%  Similarity=0.344  Sum_probs=51.0

Q ss_pred             HHHHHHHHhcceEEeeee-eEEEccCCCcceeEEEEEeeC---C--cEEEEEEEECCCCceeec-CccccCCC--CCCCC
Q psy8319          22 ADDIYAAINSTQFTGVSG-DVAFSSQGDRIALTQIEQVIN---G--SYTKLGFYDTQADNLTWF-DRERWIGG--KVPQD   92 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG-~V~Fd~nGdr~~~y~I~q~q~---~--~~v~VG~y~~~~~~l~~~-~~i~W~~~--~~P~s   92 (330)
                      .++|+++|++++|++.+| .|.||++||+.+.|||.|||.   |  .+++||.|+.  +.|+++ +.| |.++  ++|.+
T Consensus       420 ~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~~~~YdI~n~~~~~~~~~~~~~VG~~~~--~~l~i~~~~i-w~~~~~~vP~~  496 (496)
T 3ks9_A          420 GSKLLDFLIKSSFIGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDYVHVGTWHE--GVLNIDDYKI-QMNKSGLVPRG  496 (496)
T ss_dssp             HHHHHHHHHTCEEECTTSCEEECCTTSCCCCEEEEEEEEECC--CEEEEEEEEEET--TEEEECTTTC------------
T ss_pred             HHHHHHHHHhcCCcCCCCCEEEECCCCCccceEEEEEEEECCCCCEEEEEEEEEeC--CeEEEehhhc-ccCCCCCCCCC
Confidence            468999999999999999 699999999999999999982   3  4789999983  468887 567 6553  57753

>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*

Probab=98.65  E-value=3.5e-08  Score=95.60  Aligned_cols=129  Identities=19%  Similarity=0.266  Sum_probs=94.6

Q ss_pred             hhhhhhhhccccccc-ccchHHHHHHHHHhhhcCCC----CCCCceEEEEeecCCcCCchhHHHHHHhhh---ccccEEE
Q psy8319         149 MLVGIAFCMSLNFNL-PFACEPAAKLALEDVNNATD----LLPGFKLQLHWNDSECEPGLGASVMYNLLY---NNPQKLM  220 (330)
Q Consensus       149 iliG~ll~~~~~~~~-~~~c~~~~~~A~~~iN~~~~----ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~---~k~~ri~  220 (330)
                      +-+|.++++++.... +..+..++++|+|+||++..    +++|++|++++.|++|++. +...+.+.+.   .+....+
T Consensus        10 i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~v~ai   88 (441)
T 1jdp_A           10 IEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAKPDLI   88 (441)
T ss_dssp             EEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCCCSEE
T ss_pred             eEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccCCceEE
Confidence            678888888775443 24567899999999999987    8899999999999999998 6554444432   2134445


Q ss_pred             Eeecccceeeehhhhhhcccceeec-------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319         221 LLAGCSTVCTTVAEAAKMWNLVVKK-------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       221 ~i~~cs~~~~~va~~~~~w~~~~~~-------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      ++|.||..+..++.....|++|+.+             .+|+ ++++.+     ...+++++.+++|+.++.++.+.
T Consensus        89 iG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~-~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~  164 (441)
T 1jdp_A           89 LGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSH-LTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDD  164 (441)
T ss_dssp             ECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTT-EEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred             ECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCc-eEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence            5688998888888888888888721             3566 455544     35778899999999999988653

>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*

Probab=98.61  E-value=5.7e-08  Score=92.34  Aligned_cols=66  Identities=23%  Similarity=0.465  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHhcceE-EeeeeeEEEccCCCc-ceeEEEEEeeCCcEEEEEEEECCCCceeec-CccccCCC
Q psy8319          20 EIADDIYAAINSTQF-TGVSGDVAFSSQGDR-IALTQIEQVINGSYTKLGFYDTQADNLTWF-DRERWIGG   87 (330)
Q Consensus        20 ~~~~~l~~~l~~vsF-~GisG~V~Fd~nGdr-~~~y~I~q~q~~~~v~VG~y~~~~~~l~~~-~~i~W~~~   87 (330)
                      +.+..|.+.+.+++| .|++|+|+||++|++ ...|+|.||+++.+++||.|+.  ++++++ +.|.|++|
T Consensus       316 ~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~~~~I~~~~~~~~~~VG~w~~--~~l~i~~~~i~W~~~  384 (384)
T 3qek_A          316 KTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQYSIMNLQNRKLVQVGIFNG--SYIIQNDRKIIWPGG  384 (384)
T ss_dssp             TTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSCCEEEEEEETTEEEEEEEECS--SSEEECSSCCCCSCC
T ss_pred             ccHHHHHHHHhcCCccCCCCcceEECCCCCCCcccEEEEEEcCCceEEEEEEeC--CeEeeccceeeCCCC
Confidence            467889999999999 999999999999998 7899999999888999999984  467776 68899874

>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*

Probab=98.60  E-value=4.8e-08  Score=94.12  Aligned_cols=127  Identities=20%  Similarity=0.308  Sum_probs=95.1

Q ss_pred             hhhhhhhhcccccc-cc-cchHHHHHHHHHhhhcCCCCCCCceEEEEeecC-----CcCCchhHHHHHHhhhccccEEEE
Q psy8319         149 MLVGIAFCMSLNFN-LP-FACEPAAKLALEDVNNATDLLPGFKLQLHWNDS-----ECEPGLGASVMYNLLYNNPQKLML  221 (330)
Q Consensus       149 iliG~ll~~~~~~~-~~-~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds-----~c~~~~~~t~~~~~l~~k~~ri~~  221 (330)
                      +.+|++++..+... .+ ....+++++|+|+||++..+++|++|++++.|+     +|++..+...+...+..+....++
T Consensus         3 i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~avi   82 (435)
T 1dp4_A            3 LTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAVFL   82 (435)
T ss_dssp             EEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSEEE
T ss_pred             eEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceEEE
Confidence            45777888765432 22 233448999999999999999999999999999     677777777777777655555556


Q ss_pred             eecccceeeehhhhhhcccceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecc
Q psy8319         222 LAGCSTVCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPL  275 (330)
Q Consensus       222 i~~cs~~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~  275 (330)
                      ++.||..+..++..+..|++|+.+            .+|++++....    +.++++++.+++|+.++.+
T Consensus        83 G~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii  152 (435)
T 1dp4_A           83 GPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALV  152 (435)
T ss_dssp             CCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEE
T ss_pred             CCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEE
Confidence            688998888888888888888731            25664444333    3577899999999999998

>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*

Probab=98.58  E-value=4.2e-08  Score=94.69  Aligned_cols=131  Identities=21%  Similarity=0.348  Sum_probs=104.4

Q ss_pred             hhhhhhhhhcccccc---cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhcc-ccEEEEee
Q psy8319         148 IMLVGIAFCMSLNFN---LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNN-PQKLMLLA  223 (330)
Q Consensus       148 ~iliG~ll~~~~~~~---~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k-~~ri~~i~  223 (330)
                      .+.+|.++++++...   .+..+..++++|+|+||++ .++.|++|++++.|++|++..+...+...+... ....++++
T Consensus        14 ~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~aviG~   92 (433)
T 4f11_A           14 PLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVFGG   92 (433)
T ss_dssp             EEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCSEEEEC
T ss_pred             ceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEECC
Confidence            478899999988653   4567889999999999999 888999999999999999999999988887652 34445568


Q ss_pred             cccceeeehhhhhhcccceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecceecc
Q psy8319         224 GCSTVCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       224 ~cs~~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      .||..+..++.....|++|+..            .+|+.++....    +.++++++.+++|+.++.++.+.
T Consensus        93 ~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~  164 (433)
T 4f11_A           93 VCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDV  164 (433)
T ss_dssp             CSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESS
T ss_pred             CcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecc
Confidence            8988888888888888888721            24664443333    46888999999999999998754

>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*

Probab=98.54  E-value=1e-07  Score=95.63  Aligned_cols=131  Identities=15%  Similarity=0.187  Sum_probs=98.6

Q ss_pred             hhhhhhhhhccccc-----------ccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhh---
Q psy8319         148 IMLVGIAFCMSLNF-----------NLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLY---  213 (330)
Q Consensus       148 ~iliG~ll~~~~~~-----------~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~---  213 (330)
                      -+.+|++++..+..           ..+.....++++|+|+||++..+++|.+|++++.|+.|++..+...+...+.   
T Consensus        14 ~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l~~~~   93 (555)
T 2e4u_A           14 DLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASL   93 (555)
T ss_dssp             SEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHHHTTC
T ss_pred             CEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHHhCcC
Confidence            36788888887643           1233446789999999999999999999999999999999888877665542   


Q ss_pred             ---------------------ccccEEEEeecccceeeehhhhhhcccceeec------------ccCceEEeeeh----
Q psy8319         214 ---------------------NNPQKLMLLAGCSTVCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT----  256 (330)
Q Consensus       214 ---------------------~k~~ri~~i~~cs~~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~----  256 (330)
                                           .+....++++.+|..+..++.....+++|+.+            .+|+ ++++++    
T Consensus        94 ~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~-~fr~~p~d~~  172 (555)
T 2e4u_A           94 TKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDY-FARTVPPDFY  172 (555)
T ss_dssp             --------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTT-EEESSCCHHH
T ss_pred             cccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCC-ceeeCCChHH
Confidence                                 12233344578888777788888888888732            3566 455554    


Q ss_pred             -hHHHHHHHHHhcceEeecceecc
Q psy8319         257 -GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       257 -~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                       ..++++++.+++|+.++.++.+.
T Consensus       173 ~~~a~~~ll~~fgw~~V~ii~~d~  196 (555)
T 2e4u_A          173 QAKAMAEILRFFNWTYVSTVASEG  196 (555)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEESS
T ss_pred             HHHHHHHHHHHcCCeEEEEEEeeC
Confidence             36788999999999999998754

>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*

Probab=98.54  E-value=9.6e-08  Score=94.27  Aligned_cols=61  Identities=25%  Similarity=0.435  Sum_probs=50.4

Q ss_pred             HHHHHHHHhcceEEeeee-eEEEccCCCcceeEEEEEee---CC--cEEEEEEEECCCCceeec-CccccC
Q psy8319          22 ADDIYAAINSTQFTGVSG-DVAFSSQGDRIALTQIEQVI---NG--SYTKLGFYDTQADNLTWF-DRERWI   85 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG-~V~Fd~nGdr~~~y~I~q~q---~~--~~v~VG~y~~~~~~l~~~-~~i~W~   85 (330)
                      .++|+++|++++|++.+| +|.||+|||+.+.|||.|||   ++  .+++||.|+   ++|.++ +.|.|+
T Consensus       413 ~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~~~~YdI~n~~~~~~~~~~~~~VG~~~---~~l~i~~~~i~W~  480 (481)
T 3mq4_A          413 GKKLLKYIRNVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTSNPGYRLIGQWT---DELQLNIEDMQWG  480 (481)
T ss_dssp             HHHHHHHHHTCEEECTTSSEEECCTTSCCCCEEEEEEEC-----CCCEEEEEEEE---TTEEEECSCC---
T ss_pred             HHHHHHHHhcceeecCCCCEEEECCCCCCceeEEEEEEEECCCCcEEEEEEEEEc---CccEecccccccC
Confidence            368999999999999999 79999999999999999998   22  578999998   368887 678996

>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*

Probab=98.52  E-value=9.6e-08  Score=95.90  Aligned_cols=69  Identities=26%  Similarity=0.467  Sum_probs=59.8

Q ss_pred             HHHHHH-HHhcceEE------eeeee-EEEccCCCcceeEEEEEee--CC--cEEEEEEEECCCCceeec-CccccCCCC
Q psy8319          22 ADDIYA-AINSTQFT------GVSGD-VAFSSQGDRIALTQIEQVI--NG--SYTKLGFYDTQADNLTWF-DRERWIGGK   88 (330)
Q Consensus        22 ~~~l~~-~l~~vsF~------GisG~-V~Fd~nGdr~~~y~I~q~q--~~--~~v~VG~y~~~~~~l~~~-~~i~W~~~~   88 (330)
                      .++|.+ +|++++|.      |.+|+ |+||++||+.+.|+|.|||  +|  .+++||.|+.   .|.++ +.|.|++++
T Consensus       403 ~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~~~~y~I~~~~~~~g~~~~~~VG~~~~---~l~i~~~~I~W~~~~  479 (555)
T 2e4u_A          403 GKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGMGRYNVFNLQQTGGKYSYLKVGHWAE---TLSLDVDSIHWSRNS  479 (555)
T ss_dssp             HHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCCCCCEEEEEEECTTSSCEEEEEEEESS---SEECCGGGCCCTTSS
T ss_pred             cccccHHhHhceeecccccccCCCCCeEEEcCCCCccceEEEEEEEecCCcEEEEEEEEecc---eEEEeccccccCCCC
Confidence            467888 99999999      99996 9999999999999999997  34  4899999973   67776 689998888


Q ss_pred             CCCCc
Q psy8319          89 VPQDR   93 (330)
Q Consensus        89 ~P~s~   93 (330)
                      +|.|.
T Consensus       480 ~P~S~  484 (555)
T 2e4u_A          480 VPTSQ  484 (555)
T ss_dssp             CCCCC
T ss_pred             Cccee
Confidence            99884

>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*

Probab=98.52  E-value=1.2e-07  Score=93.59  Aligned_cols=130  Identities=17%  Similarity=0.185  Sum_probs=94.5

Q ss_pred             hhhhhhhhcccccc-----------cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhc---
Q psy8319         149 MLVGIAFCMSLNFN-----------LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYN---  214 (330)
Q Consensus       149 iliG~ll~~~~~~~-----------~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~---  214 (330)
                      +.+|++++..+...           .+..-..++++|+|+||++..+++|.+|+++..|+.|++..+...+...+-.   
T Consensus        17 i~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~ll~~~~~   96 (481)
T 3mq4_A           17 VTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQ   96 (481)
T ss_dssp             EEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGGGGGGSC
T ss_pred             EEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHHHhCCcc
Confidence            57788887765442           2344567899999999999999999999999999999999888888776643   


Q ss_pred             -------------------cccEEEEeecccceeeehhhhhhcccceee------------cccCceEEeeeh-----hH
Q psy8319         215 -------------------NPQKLMLLAGCSTVCTTVAEAAKMWNLVVK------------KVEPWKLYTMVT-----GL  258 (330)
Q Consensus       215 -------------------k~~ri~~i~~cs~~~~~va~~~~~w~~~~~------------~~~~~~l~~~v~-----~~  258 (330)
                                         +....++++.+|..+..++.....+++|+.            ..+|+ ++++.+     ..
T Consensus        97 ~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~-~fr~~psd~~~~~  175 (481)
T 3mq4_A           97 KDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDF-FSRVVPPDSFQAQ  175 (481)
T ss_dssp             CCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTT-EEESSCCTHHHHH
T ss_pred             cCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCc-eEEecCchHHHHH
Confidence                               112223346777666677777777887763            23576 455544     46


Q ss_pred             HHHHHHHHhcceEeecceecc
Q psy8319         259 LSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       259 ~~v~li~~~~W~~v~~~~~~~  279 (330)
                      .+++++.+++|+.++.++.+.
T Consensus       176 a~~~ll~~fgw~~V~li~~d~  196 (481)
T 3mq4_A          176 AMVDIVKALGWNYVSTLASEG  196 (481)
T ss_dssp             HHHHHHHHHTCCEEEEC---C
T ss_pred             HHHHHHHHCCCeEEEEEEEcc
Confidence            788999999999999997643

>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}

Probab=98.51  E-value=9.2e-08  Score=94.54  Aligned_cols=64  Identities=22%  Similarity=0.412  Sum_probs=52.6

Q ss_pred             HHHHH-HHHhcceEEee------ee-eEEEccCCCcceeEEEEEee--CC--cEEEEEEEECCCCceeec-CccccCCCC
Q psy8319          22 ADDIY-AAINSTQFTGV------SG-DVAFSSQGDRIALTQIEQVI--NG--SYTKLGFYDTQADNLTWF-DRERWIGGK   88 (330)
Q Consensus        22 ~~~l~-~~l~~vsF~Gi------sG-~V~Fd~nGdr~~~y~I~q~q--~~--~~v~VG~y~~~~~~l~~~-~~i~W~~~~   88 (330)
                      .++|+ ++|++++|++.      +| +|.||+|||+.+.|+|.|||  +|  .+++||.|+   ++|+++ +.|.|++++
T Consensus       402 ~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~~~~YdI~n~~~~~~~~~~~~VG~~~---~~l~i~~~~I~W~~~~  478 (479)
T 3sm9_A          402 GKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGMGRYNVFNFQNVGGKYSYLKVGHWA---ETLSLDVNSIHWSRNS  478 (479)
T ss_dssp             HHHHHHHTGGGCCEECTTC-----CCEECCCTTCBCCCCEEEEEEEESSSCEEEEEEEEES---SSEEECGGGCCCC---
T ss_pred             hHHHHHHHhcceeeccccCccccCCCeEEECCCCCcccceEEEEEEECCCcEEEEEEEEEe---ceEEEecceeEeCCCC
Confidence            56899 99999999998      67 79999999999999999998  33  478999997   468887 679998764

>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}

Probab=98.49  E-value=1.5e-07  Score=92.98  Aligned_cols=114  Identities=15%  Similarity=0.221  Sum_probs=88.6

Q ss_pred             cchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhcc------------------------ccEEE
Q psy8319         165 FACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNN------------------------PQKLM  220 (330)
Q Consensus       165 ~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k------------------------~~ri~  220 (330)
                      ..-..+.++|+|+||++..+++|.+|.++..|+.|++..++..+...+-..                        ....+
T Consensus        41 ~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~ll~~~~~~~~~pny~C~~~~~~~~~~~~~~v~av  120 (479)
T 3sm9_A           41 IQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCPDGSYAIQENIPLLIAGV  120 (479)
T ss_dssp             HHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHHHTCC-----------------------CEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHHHhCCCccCCCCCCccCCCCccccccCCCceEEE
Confidence            344678999999999999999999999999999999999988887776541                        12223


Q ss_pred             Eeecccceeeehhhhhhcccceee------------cccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319         221 LLAGCSTVCTTVAEAAKMWNLVVK------------KVEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       221 ~i~~cs~~~~~va~~~~~w~~~~~------------~~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      +++.+|..+..++.....+++|+.            ..+|+ ++++.+     ..++++++.+++|+.++.++.+.
T Consensus       121 iG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~-~fr~~psd~~~~~a~~~ll~~fgw~~V~ii~~dd  195 (479)
T 3sm9_A          121 IGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDY-FARTVPPDFYQAKAMAEILRFFNWTYVSTVASEG  195 (479)
T ss_dssp             ECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTT-EEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESS
T ss_pred             ECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCC-eEEeCCcHHHHHHHHHHHHHHCCCeEEEEEEecc
Confidence            447777777777788888888873            23676 455544     46789999999999999998653

>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A

Probab=98.34  E-value=3.7e-07  Score=87.38  Aligned_cols=122  Identities=10%  Similarity=0.020  Sum_probs=92.4

Q ss_pred             hhhhhhhhcccccccccchHHHHHHHHHhhhcCCCC-CCCceEEEEeecCCc-CCchhHHHHHHhhhccccEEEEeeccc
Q psy8319         149 MLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDL-LPGFKLQLHWNDSEC-EPGLGASVMYNLLYNNPQKLMLLAGCS  226 (330)
Q Consensus       149 iliG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~l-l~gf~l~l~~~ds~c-~~~~~~t~~~~~l~~k~~ri~~i~~cs  226 (330)
                      +-+|+++++++.     ....++++|+|+||++..+ +.|.+|+++..|++| ++..+...+-..+-.+ ...+++|.||
T Consensus         6 i~IG~i~~~sg~-----~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~~-V~aiiG~~~S   79 (389)
T 3o21_A            6 ISIGGLFMRNTV-----QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRG-VYAIFGFYDQ   79 (389)
T ss_dssp             EEEEEEECTTCH-----HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTTT-CSCEEECCCT
T ss_pred             eEEEEEeCCCCH-----HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhcC-cEEEEeCCCh
Confidence            467888888765     5678999999999999888 689999999999999 7877777776665543 3334568888


Q ss_pred             ceeeehhhhhhcccceeec-------ccCceEEeee-hhHHHHHHHHHhcceEeecce
Q psy8319         227 TVCTTVAEAAKMWNLVVKK-------VEPWKLYTMV-TGLLSIDLVILLCWQFYDPLQ  276 (330)
Q Consensus       227 ~~~~~va~~~~~w~~~~~~-------~~~~~l~~~v-~~~~~v~li~~~~W~~v~~~~  276 (330)
                      ..+..++.....+++|+..       ..++.++... -+.++++++.+++|+.++.++
T Consensus        80 ~~~~a~~~i~~~~~iP~Is~s~~~~~~~~~~~~~~p~~~~a~~~~~~~~gw~~vaii~  137 (389)
T 3o21_A           80 MSMNTLTSFCGALHTSFVTPSFPTDADVQFVIQMRPALKGAILSLLSYYKWEKFVYLY  137 (389)
T ss_dssp             TTHHHHHHHHHHHTCCEEECSCCCSSCCSSEEECSCCSHHHHHHHHHHHTCCEEEEEE
T ss_pred             hHHHHHHHHhccCCCceeecCCCCccCCceEEEEccCHHHHHHHHHHhCCCCEEEEEE
Confidence            8887778888888888751       1222122111 256788999999999999998

>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*

Probab=98.32  E-value=1.1e-06  Score=87.04  Aligned_cols=114  Identities=16%  Similarity=0.245  Sum_probs=86.8

Q ss_pred             cchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhh----------------------------ccc
Q psy8319         165 FACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLY----------------------------NNP  216 (330)
Q Consensus       165 ~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~----------------------------~k~  216 (330)
                      ..-..+..+|+|.||++..+++|.+|.+...|+.|++..++..+...+.                            .+.
T Consensus        49 ~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~~a~~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~  128 (496)
T 3ks9_A           49 IQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIEFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKP  128 (496)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHHSTTC--------------------------CC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHHHHHHHHHhhhccccccCCCCccccCcccccccccCCCc
Confidence            3456788999999999999999999999999999999988888877661                            112


Q ss_pred             cEEEEeecccceeeehhhhhhcccceee------------cccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319         217 QKLMLLAGCSTVCTTVAEAAKMWNLVVK------------KVEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       217 ~ri~~i~~cs~~~~~va~~~~~w~~~~~------------~~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      ...++++.+|..+..++.....+++|+.            ..+|+ ++++.+     ..++++++.+++|+.++.++.+.
T Consensus       129 v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~-~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd  207 (496)
T 3ks9_A          129 IAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKY-FLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEG  207 (496)
T ss_dssp             EEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTT-EEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESS
T ss_pred             eEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCCc-eEEecCChHHHHHHHHHHHHHcCCcEEEEEEecc
Confidence            2223447777777777777777888763            23566 455544     46889999999999999998643

>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A

Probab=98.28  E-value=9.3e-07  Score=84.18  Aligned_cols=129  Identities=9%  Similarity=-0.033  Sum_probs=91.5

Q ss_pred             hhhhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce
Q psy8319         149 MLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV  228 (330)
Q Consensus       149 iliG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~  228 (330)
                      +-+|.++++++.+  +.....++++|+|+||++..++.|++|+++..|++|++..+.......+..+....+++|.||..
T Consensus         5 ikIG~~~~~s~~~--G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~~   82 (393)
T 3om0_A            5 LRMAAILDDQTVC--GRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPKGVVSVLGPSSSPA   82 (393)
T ss_dssp             EEEEEEECCCCSS--CCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGGGCCSCEECCSSCHH
T ss_pred             eeEEEEecCCCcc--cHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHhcCcEEEECCCCchh
Confidence            5678888887543  44678899999999999999999999999999999998755444433333443444456888744


Q ss_pred             e-eehhhhhhcccceeec---------ccCce-EEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319         229 C-TTVAEAAKMWNLVVKK---------VEPWK-LYTMVT-----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       229 ~-~~va~~~~~w~~~~~~---------~~~~~-l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      + ..++.....+++|+..         .+|++ .+++.+     ...+++++.+++|+.++.++.+.
T Consensus        83 ~~~a~~~i~~~~~ip~is~~a~~~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~  149 (393)
T 3om0_A           83 SASTVSHICGEKEIPHIKVGPEETPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKA  149 (393)
T ss_dssp             HHHHHHHHHHHHTCCEEECSCCCCC----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESST
T ss_pred             HHHHHHHHHhccCCCeEeccCCcCccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCc
Confidence            3 4666777777777632         24443 145544     35778999999999999998744

>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}

Probab=98.26  E-value=1.3e-06  Score=82.18  Aligned_cols=126  Identities=12%  Similarity=0.024  Sum_probs=85.0

Q ss_pred             hhhhhhhhcccccccccchHHHHHHHHHhhhcCCCCC-CCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319         149 MLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLL-PGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST  227 (330)
Q Consensus       149 iliG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll-~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~  227 (330)
                      |.||++++..+     .....+.++|+|+||++..++ .+++|.+...++.|+.+......+-.+..+.....++|.||.
T Consensus         6 I~IG~lf~~~~-----~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~   80 (389)
T 4gpa_A            6 VQIGGLFIRNT-----DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKR   80 (389)
T ss_dssp             EEEEEEECTTC-----HHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEECCCTT
T ss_pred             EEEEEEEcCCC-----hHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHhcCCEEEEeCCccH
Confidence            45777776543     345778999999999998776 566555555555544433333333233344444556799999


Q ss_pred             eeeehhhhhhcccceee---------cccCceEEeeehhHHHHHHHHHhcceEeecceeccc
Q psy8319         228 VCTTVAEAAKMWNLVVK---------KVEPWKLYTMVTGLLSIDLVILLCWQFYDPLQRITE  280 (330)
Q Consensus       228 ~~~~va~~~~~w~~~~~---------~~~~~~l~~~v~~~~~v~li~~~~W~~v~~~~~~~~  280 (330)
                      .+..++..+..|++|..         ..+++ +++.....++++++.+++|+.++.++....
T Consensus        81 ~~~~v~~i~~~~~ip~is~~~~~~~~~~~~~-~~~~~~~~a~~~l~~~~~w~~vaii~~~d~  141 (389)
T 4gpa_A           81 SVHTLTSFCSALHISLITPSFPTEGESQFVL-QLRPSLRGALLSLLDHYEWNCFVFLYDTDR  141 (389)
T ss_dssp             THHHHHHHHHHTTCEEEECSCCCSSCCSSEE-ECSCCCHHHHHHHHHHTTCCEEEEEECSTT
T ss_pred             HHHHHHHHHHHhCCCceeccccccccccCCc-cccCCHHHHHHHHHHHcCCcEEEEEEecch
Confidence            98888888889988873         22333 223445678999999999999999986543

>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A

Probab=98.15  E-value=1.8e-06  Score=82.51  Aligned_cols=53  Identities=21%  Similarity=0.377  Sum_probs=47.4

Q ss_pred             HHHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEeeCCcEEEEEEEECCC
Q psy8319          21 IADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVINGSYTKLGFYDTQA   73 (330)
Q Consensus        21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q~~~~v~VG~y~~~~   73 (330)
                      -++.|.++|++++|.|+||+++||+||||. ..|+|++++++.+++||.|++..
T Consensus       322 ~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~  375 (389)
T 3o21_A          322 QGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYE  375 (389)
T ss_dssp             TTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTT
T ss_pred             CcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCceeeeEEcCCC
Confidence            357899999999999999999999999987 48999999987899999998653

>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A

Probab=98.11  E-value=2.9e-06  Score=80.53  Aligned_cols=54  Identities=24%  Similarity=0.445  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEeeCCcEEEEEEEECCC
Q psy8319          20 EIADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVINGSYTKLGFYDTQA   73 (330)
Q Consensus        20 ~~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q~~~~v~VG~y~~~~   73 (330)
                      .-++.|.++|++++|.|++|+|+||++|||. ..|+|.+++++.+++||.|++..
T Consensus       315 ~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~  369 (376)
T 3hsy_A          315 GQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVD  369 (376)
T ss_dssp             HHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEEEEEEEETTT
T ss_pred             CCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCceEEEEEcCCC
Confidence            4567899999999999999999999999975 58999999988899999998653

>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A

Probab=98.10  E-value=3.5e-06  Score=80.11  Aligned_cols=54  Identities=17%  Similarity=0.338  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHhcceEEeeeeeEEEccCCCc-ceeEEEEEeeCCcEEEEEEEECCC
Q psy8319          20 EIADDIYAAINSTQFTGVSGDVAFSSQGDR-IALTQIEQVINGSYTKLGFYDTQA   73 (330)
Q Consensus        20 ~~~~~l~~~l~~vsF~GisG~V~Fd~nGdr-~~~y~I~q~q~~~~v~VG~y~~~~   73 (330)
                      .-++.+.++|++++|.|++|+++||++||+ ...|+|++++++.+++||.|++..
T Consensus       322 ~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~  376 (393)
T 3om0_A          322 PHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVWYSNR  376 (393)
T ss_dssp             TTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEEEEEECC-
T ss_pred             cCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCceEeeeEcCCC
Confidence            446789999999999999999999999998 478999999988899999998643

>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*

Probab=98.10  E-value=4.6e-06  Score=79.08  Aligned_cols=123  Identities=14%  Similarity=0.099  Sum_probs=85.9

Q ss_pred             hhhhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEe-----e
Q psy8319         149 MLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLL-----A  223 (330)
Q Consensus       149 iliG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i-----~  223 (330)
                      +-+|++++.+       ....+.+||+|+||++- ...+++++++..|++|++..+...+...+..+-....++     +
T Consensus         6 i~IG~i~~~s-------~~~~~~~lAv~~iN~~~-~~~~~~l~~~~~d~~~d~~~a~~~~~~~Li~~~V~aiiG~~~~~~   77 (384)
T 3qek_A            6 VNIGAVLSTK-------KHEQIFREAVNQANKRH-FTRKIQLQATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPPAP   77 (384)
T ss_dssp             EEEEEEESSH-------HHHHHHHHHHHHHHHHS-CCSSEEEEEEEEECCSSHHHHHHHHHHHTGGGTEEEEEECC----
T ss_pred             EEEeEEeeCc-------hHHHHHHHHHHHHhccc-cCCceEEEEEEecccCCHHHHHHHHHHHHHHcCceEEEEecCCCC
Confidence            4577777775       45788999999999875 567899999999999999888866556444443333445     3


Q ss_pred             cccceeeehhhhhhcccceee------------cccCceEEeeeh----hHHHHHHHHHhcceEeecceecc
Q psy8319         224 GCSTVCTTVAEAAKMWNLVVK------------KVEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       224 ~cs~~~~~va~~~~~w~~~~~------------~~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      .||..+..++.....+++|+.            ..+|++++....    ..++++++.+++|+.++.++.+.
T Consensus        78 ~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~  149 (384)
T 3qek_A           78 TDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDD  149 (384)
T ss_dssp             ----CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESS
T ss_pred             ccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcC
Confidence            577666666777777887762            124664443333    46888999999999999998744

>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}

Probab=97.96  E-value=9.6e-06  Score=77.00  Aligned_cols=52  Identities=23%  Similarity=0.521  Sum_probs=46.9

Q ss_pred             HHHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEeeCCcEEEEEEEECC
Q psy8319          21 IADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVINGSYTKLGFYDTQ   72 (330)
Q Consensus        21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q~~~~v~VG~y~~~   72 (330)
                      =++.+.++|++++|.|++|+|+||+|||+. ..|+|+|++++.+.+||.|+..
T Consensus       319 ~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~W~~~  371 (384)
T 3saj_A          319 QGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNED  371 (384)
T ss_dssp             THHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETT
T ss_pred             CcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCcceeEEEcCC
Confidence            367899999999999999999999999976 5799999998888999999864

>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*

Probab=97.86  E-value=1.6e-05  Score=75.49  Aligned_cols=126  Identities=14%  Similarity=0.125  Sum_probs=93.6

Q ss_pred             hhhhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCc-CCchhHHHHHHhhhccccEEEEeecccc
Q psy8319         149 MLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSEC-EPGLGASVMYNLLYNNPQKLMLLAGCST  227 (330)
Q Consensus       149 iliG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c-~~~~~~t~~~~~l~~k~~ri~~i~~cs~  227 (330)
                      +-+|++++.++. ..+.....++++|+|+||++..++.+++|++.+.|++| |++.+...+...+-.+ ...++++.||.
T Consensus         5 i~IG~l~~~sg~-~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~~-V~aiiG~~~S~   82 (395)
T 3h6g_A            5 LRFGGIFEYVES-GPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLG-VAAIFGPSHSS   82 (395)
T ss_dssp             EEEEEEEEESSS-CSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHHC-CSCEECCSSHH
T ss_pred             eEEEEEecCCCc-ccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhhcC-cEEEECCCChh
Confidence            567888888765 23456788999999999999999999999999988885 6666666665555333 33345688888


Q ss_pred             eeeehhhhhhcccceeec----------ccCceEEeeeh-----hHHHHHHHHHhcceEeeccee
Q psy8319         228 VCTTVAEAAKMWNLVVKK----------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQR  277 (330)
Q Consensus       228 ~~~~va~~~~~w~~~~~~----------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~  277 (330)
                      .+..++.....+++|...          ..++ ++++.+     +.++++++.+++|+.++.++.
T Consensus        83 ~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~-~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~d  146 (395)
T 3h6g_A           83 SANAVQSICNALGVPHIQTRWKHQVSDNKDSF-YVSLYPDFSSLSRAILDLVQFFKWKTVTVVYD  146 (395)
T ss_dssp             HHHHHHHHHHHTTCCEEECSCCCCCTTCCCCS-EEEEEECHHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             HHHHHHHHHhcCCCCeEeeccCcccccccCce-EEEecCCHHHHHHHHHHHHHHCCCeEEEEEEE
Confidence            877777888888888732          1344 455544     357788999999999999874

>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*

Probab=97.83  E-value=1.1e-05  Score=76.69  Aligned_cols=61  Identities=16%  Similarity=0.278  Sum_probs=50.9

Q ss_pred             HHHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEee-CCcEEEEEEEECCCCceeecCccccCC
Q psy8319          21 IADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVI-NGSYTKLGFYDTQADNLTWFDRERWIG   86 (330)
Q Consensus        21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q-~~~~v~VG~y~~~~~~l~~~~~i~W~~   86 (330)
                      -+..|+++|++++|+|.  +++||++|+|. ..|+|.+++ ++.+++||.|+  ++.|.++ .+.|+.
T Consensus       301 ~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~~~VG~W~--~~~L~~~-~~~Wp~  363 (364)
T 3qel_B          301 QSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKWERVGKWK--DKSLQMK-YYVWPR  363 (364)
T ss_dssp             CCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCEEEEEEEC--SSCEEES-CSSCCC
T ss_pred             CHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCcEEEEEEC--CCeEEeC-cCCCCC
Confidence            45688999999999987  89999999997 689999998 56799999997  3457664 678963

>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*

Probab=97.81  E-value=2.1e-05  Score=74.64  Aligned_cols=53  Identities=17%  Similarity=0.402  Sum_probs=47.6

Q ss_pred             HHHHHHHHHhcceEEeeeeeEEEcc-CCCcce-eEEEEEeeCCcEEEEEEEECCC
Q psy8319          21 IADDIYAAINSTQFTGVSGDVAFSS-QGDRIA-LTQIEQVINGSYTKLGFYDTQA   73 (330)
Q Consensus        21 ~~~~l~~~l~~vsF~GisG~V~Fd~-nGdr~~-~y~I~q~q~~~~v~VG~y~~~~   73 (330)
                      -++.+.++|++++|.|++|+++||+ +|+|.. .|+|.|++++.+++||.|+...
T Consensus       324 ~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w~~~~  378 (395)
T 3h6g_A          324 FGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPAS  378 (395)
T ss_dssp             THHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEEEEETTT
T ss_pred             ccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCceEEEEEcCCC
Confidence            3668899999999999999999998 999976 7999999988899999998643

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}

Probab=97.75  E-value=2.9e-05  Score=80.85  Aligned_cols=118  Identities=11%  Similarity=0.154  Sum_probs=87.3

Q ss_pred             hhhhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce
Q psy8319         149 MLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV  228 (330)
Q Consensus       149 iliG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~  228 (330)
                      +-+|++++.++.     ....++++|+|+||++.     ++|+++..|++|+...........+..+....+++|.||..
T Consensus         3 ikIG~l~~~tg~-----~~~~a~~lAveeiN~~~-----~~l~~~~~D~~~~~~~~a~~~~~~l~~~~V~aiiG~~~S~~   72 (823)
T 3kg2_A            3 IQIGGLFPRGAD-----QEYSAFRVGMVQFSTSE-----FRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS   72 (823)
T ss_dssp             EEEEEEEETTCH-----HHHHHHHHHHHHTCCSS-----CEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred             ceEEEEeCCCCh-----HHHHHHHHHHHHHhcCC-----eEEEEEEEEcCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Confidence            457777777664     56889999999999885     89999999999954444444444444554555567889888


Q ss_pred             eeehhhhhhcccceeec-------ccCceEEeeeh--hHHHHHHHHHhcceEeeccee
Q psy8319         229 CTTVAEAAKMWNLVVKK-------VEPWKLYTMVT--GLLSIDLVILLCWQFYDPLQR  277 (330)
Q Consensus       229 ~~~va~~~~~w~~~~~~-------~~~~~l~~~v~--~~~~v~li~~~~W~~v~~~~~  277 (330)
                      +..++..+..|++|+.+       .+++ ++++.+  +.++++++.+++|+.++.++.
T Consensus        73 ~~a~~~i~~~~~iP~is~~~~~~~~~~~-~~r~~p~~~~a~~~l~~~~gw~~v~ii~d  129 (823)
T 3kg2_A           73 VNTITSFCGTLHVSFITPSFPTDGTHPF-VIQMRPDLKGALLSLIEYYQWDKFAYLYD  129 (823)
T ss_dssp             HHHHHHHHHHTTCEEEECSCCCSSCCSS-EEECSCCCHHHHHHHHHHTTCSEEEEEEC
T ss_pred             HHHHHHHhhcCCCceeecccCCCCCCce-EEEeCCCHHHHHHHHHHHCCCCEEEEEEe
Confidence            88888888888888732       2344 344433  568889999999999999984

>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A

Probab=97.68  E-value=3.3e-05  Score=73.17  Aligned_cols=116  Identities=11%  Similarity=0.119  Sum_probs=85.5

Q ss_pred             hhhhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCc-CCchhHHHHHHhhhccccEEEEeecccc
Q psy8319         149 MLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSEC-EPGLGASVMYNLLYNNPQKLMLLAGCST  227 (330)
Q Consensus       149 iliG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c-~~~~~~t~~~~~l~~k~~ri~~i~~cs~  227 (330)
                      +-+|++++.++.     ....+++||+|+||++     |++|+++..|++| ++..+...+-..+- +....+++|.||.
T Consensus         3 i~IG~i~~~sg~-----~~~~~~~lAv~~iN~~-----g~~l~~~~~d~~~~d~~~a~~~~~~li~-~~V~aiiG~~~S~   71 (376)
T 3hsy_A            3 IQIGGLFPRGAD-----QEYSAFRVGMVQFSTS-----EFRLTPHIDNLEVANSFAVTNAFCSQFS-RGVYAIFGFYDKK   71 (376)
T ss_dssp             EEEEEEEETTCH-----HHHHHHHHHHHHTCCS-----SCEEEEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCCTT
T ss_pred             eeEEEEeCCCCH-----HHHHHHHHHHHHHhcC-----CeEEEEEEeecCCCChHHHHHHHHHHHh-cCcEEEECCCchh
Confidence            456777776553     4578999999999988     8999999999998 66666665555554 3344455688888


Q ss_pred             eeeehhhhhhcccceeec-------ccCceEEeeeh--hHHHHHHHHHhcceEeecce
Q psy8319         228 VCTTVAEAAKMWNLVVKK-------VEPWKLYTMVT--GLLSIDLVILLCWQFYDPLQ  276 (330)
Q Consensus       228 ~~~~va~~~~~w~~~~~~-------~~~~~l~~~v~--~~~~v~li~~~~W~~v~~~~  276 (330)
                      .+..++.....+++|+.+       ..++ ++++.+  ..++++++.+++|+.++.++
T Consensus        72 ~~~av~~~~~~~~ip~is~~~~~~~~~~~-~~~~~p~~~~a~~~~~~~~gw~~vaii~  128 (376)
T 3hsy_A           72 SVNTITSFCGTLHVSFITPSFPTDGTHPF-VIQMRPDLKGALLSLIEYYQWDKFAYLY  128 (376)
T ss_dssp             THHHHHHHHHHHTCEEEECSCCCCSCCTT-EEECSCCCHHHHHHHHHHTTCCEEEEEE
T ss_pred             HHHHHHHHhccCcCceeecCCCCcccCCc-eEEeCccHHHHHHHHHHhcCCCEEEEEE
Confidence            887777888888888742       1233 344433  46778899999999999998

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}

Probab=97.58  E-value=7.2e-05  Score=77.82  Aligned_cols=54  Identities=24%  Similarity=0.425  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEeeCCcEEEEEEEECC
Q psy8319          19 KEIADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVINGSYTKLGFYDTQ   72 (330)
Q Consensus        19 ~~~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q~~~~v~VG~y~~~   72 (330)
                      ..-++.+.++|++++|.|++|+++||++||+. ..|+|.|++++.+++||.|++.
T Consensus       314 ~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~  368 (823)
T 3kg2_A          314 WGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEV  368 (823)
T ss_dssp             CTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETT
T ss_pred             ccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCeeEEEEcCC
Confidence            35678999999999999999999999999986 5799999998888999999854

>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}

Probab=97.55  E-value=0.00012  Score=70.07  Aligned_cols=129  Identities=9%  Similarity=0.021  Sum_probs=94.6

Q ss_pred             hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCC-cCCchhHHHHHHhhhccccEEEEeeccc
Q psy8319         149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSE-CEPGLGASVMYNLLYNNPQKLMLLAGCS  226 (330)
Q Consensus       149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~-c~~~~~~t~~~~~l~~k~~ri~~i~~cs  226 (330)
                      +-+|.++++++..- .+.....++++|+|+||++-.++ |.+++++..|++ |++..+...+-..+..+....++++.||
T Consensus        15 i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aiiG~~~s   93 (419)
T 3h5l_A           15 VVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGIL-GRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALIAGYNL   93 (419)
T ss_dssp             EEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBT-TBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEECSCCS
T ss_pred             EEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcC-ceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEEccccc
Confidence            67888888877643 24667889999999999887664 999999999998 8998888877777764555555568888


Q ss_pred             ceeeehhhhhhcccceeec----------------ccCceEEeeeh-----hHHHHHHHHHh--------cceEeeccee
Q psy8319         227 TVCTTVAEAAKMWNLVVKK----------------VEPWKLYTMVT-----GLLSIDLVILL--------CWQFYDPLQR  277 (330)
Q Consensus       227 ~~~~~va~~~~~w~~~~~~----------------~~~~~l~~~v~-----~~~~v~li~~~--------~W~~v~~~~~  277 (330)
                      ..+..++.....+++|...                .+++ ++++.+     +..+++.+..+        +|++++.++.
T Consensus        94 ~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~-~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~vail~~  172 (419)
T 3h5l_A           94 ENGTALHDVAADAGVIAMHANTVAVHDEMVKSDPDRYWG-TFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIAIITG  172 (419)
T ss_dssp             SCSCHHHHHHHHHTCEEEECCCCHHHHHHHHHCTTTCTT-EEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEEEEEEC
T ss_pred             hhHHHhHHHHHHcCCeEEEcCcchhhhhhhhcCcccCce-EEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEEEEEEc
Confidence            7777777777778877632                2344 444443     34566777765        8999999986


Q ss_pred             cc
Q psy8319         278 IT  279 (330)
Q Consensus       278 ~~  279 (330)
                      +.
T Consensus       173 ~~  174 (419)
T 3h5l_A          173 PG  174 (419)
T ss_dssp             SS
T ss_pred             Cc
Confidence            43

>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}

Probab=97.47  E-value=6.6e-05  Score=71.14  Aligned_cols=118  Identities=9%  Similarity=-0.005  Sum_probs=83.2

Q ss_pred             hhhhhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCc-CCchhHHHHHHhhhccccEEEEeeccc
Q psy8319         148 IMLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSEC-EPGLGASVMYNLLYNNPQKLMLLAGCS  226 (330)
Q Consensus       148 ~iliG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c-~~~~~~t~~~~~l~~k~~ri~~i~~cs  226 (330)
                      .+-+|.++++++.     ....+++||+|+||++-      +|+++..|++| ++..+...+ .-+..+....++++.||
T Consensus        10 ~ikIG~~~~~sg~-----~~~~a~~lAv~~iN~~g------~l~~~~~D~~~~d~~~a~~~~-~~l~~~~V~aiiG~~~S   77 (384)
T 3saj_A           10 NIQIGGLFPNQQS-----QEHAAFRFALSQLTEPP------KLLPQIDIVNISDSFEMTYRF-CSQFSKGVYAIFGFYER   77 (384)
T ss_dssp             EEEEEEEESCSSS-----HHHHHHHHHHTTCCSSS------EEEEEEEECCTTCHHHHHHHH-HHHHHTTCSCEEECCCH
T ss_pred             ceeEEEEecCCCH-----HHHHHHHHHHHHHhcCC------ccceeeEecccCchhhHHHHH-HHHHhcCeEEEECCCCH
Confidence            3568888888775     56889999999999874      99999999999 555444444 33434434445568888


Q ss_pred             ceeeehhhhhhcccceeecc-------cCceEEeee-hhHHHHHHHHHhcceEeeccee
Q psy8319         227 TVCTTVAEAAKMWNLVVKKV-------EPWKLYTMV-TGLLSIDLVILLCWQFYDPLQR  277 (330)
Q Consensus       227 ~~~~~va~~~~~w~~~~~~~-------~~~~l~~~v-~~~~~v~li~~~~W~~v~~~~~  277 (330)
                      ..+..++..+..+++|+.+.       .++.++... -...+++++.+++|+.++.++.
T Consensus        78 ~~~~a~~~~~~~~~iP~is~~~~~~~~~~~~~~~~p~~~~a~~~~~~~~g~~~v~ii~d  136 (384)
T 3saj_A           78 RTVNMLTSFCGALHVCFITPSFPVDTSNQFVLQLRPELQEALISIIDHYKWQTFVYIYD  136 (384)
T ss_dssp             HHHHHHHHHHHHHTCCEEECSCCCSSCCTTEEECSCCCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             HHHHHHHHHhccCCCCeEeccccCcCccCceEEecccHHHHHHHHHHHCCCcEEEEEEe
Confidence            77777777777788776321       223222111 2567889999999999999983

>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}

Probab=97.43  E-value=0.00012  Score=68.27  Aligned_cols=51  Identities=27%  Similarity=0.392  Sum_probs=46.5

Q ss_pred             HHHHHHHHhcce-EEeeeeeEEEccCCCcceeEEEEEeeCCcEEEEEEEECC
Q psy8319          22 ADDIYAAINSTQ-FTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGFYDTQ   72 (330)
Q Consensus        22 ~~~l~~~l~~vs-F~GisG~V~Fd~nGdr~~~y~I~q~q~~~~v~VG~y~~~   72 (330)
                      ++.+.+.|++++ |.|++|+++||++|++...+.|.|+++|+++.||.|++.
T Consensus       312 ~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~~~~~i~~~~~g~~~~v~~~~~~  363 (366)
T 3td9_A          312 REKIAEEIRKTRNFNGASGIINIDENGDAIKSVVVNIVKNGSVDFEAVINPD  363 (366)
T ss_dssp             HHHHHHHHTTCCSEEETTEEECBCTTSCBCCCEEEEEEETTEEEEEEEECGG
T ss_pred             HHHHHHHHHhCCCCcccceeeEECCCCCccCceEEEEEECCEEEEEEecChh
Confidence            467889999998 999999999999999998899999999999999999753

>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}

Probab=97.41  E-value=0.00014  Score=67.57  Aligned_cols=95  Identities=20%  Similarity=0.212  Sum_probs=74.6

Q ss_pred             hhhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccc
Q psy8319         148 IMLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCS  226 (330)
Q Consensus       148 ~iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs  226 (330)
                      .|.||.++++++..- .+....-++++|+|+||++-.+. |.++++++.|++|+|..+...+-..+......+++++.||
T Consensus         7 tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~-Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g~~~s   85 (353)
T 4gnr_A            7 TIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGID-GKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVGPATS   85 (353)
T ss_dssp             EEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBT-TBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCCSH
T ss_pred             eEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEeccccC
Confidence            356888888877654 24567788999999999986654 9999999999999999999888777766655555567787


Q ss_pred             ceeeehhhhhhccccee
Q psy8319         227 TVCTTVAEAAKMWNLVV  243 (330)
Q Consensus       227 ~~~~~va~~~~~w~~~~  243 (330)
                      ..+..++.....++++.
T Consensus        86 ~~~~a~~~~~~~~~vp~  102 (353)
T 4gnr_A           86 GATAAAVANATKAGVPL  102 (353)
T ss_dssp             HHHHHHHHHHHHTTCCE
T ss_pred             cccceehhhhhccCcce
Confidence            77766666677777765

>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A

Probab=97.29  E-value=0.00037  Score=64.98  Aligned_cols=49  Identities=16%  Similarity=0.316  Sum_probs=45.4

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEeeCCcEEEEEEEE
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGFYD   70 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~~~~v~VG~y~   70 (330)
                      ++.+.+.|++++|.|++|+++||++|++...+.|.|+++|+++.||..-
T Consensus       314 ~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~i~~~~~g~~~~v~~~~  362 (375)
T 4evq_A          314 RKELNAAMAAASFASPRGPFKLSAAHNPVQNFYLRELKGGKSVNLGLAA  362 (375)
T ss_dssp             HHHHHHHHHTCEEEETTEEEEBCTTSCBCCCEEEEEEETTEEEEEEEEE
T ss_pred             HHHHHHHHhcCCcccCCcceeECCCCCccccEEEEEEECCCcEEeeehh
Confidence            5678899999999999999999999999999999999999999999874

>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}

Probab=97.25  E-value=0.00019  Score=67.77  Aligned_cols=130  Identities=16%  Similarity=0.116  Sum_probs=90.8

Q ss_pred             hhhhhhhhcccccccccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccce
Q psy8319         149 MLVGIAFCMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV  228 (330)
Q Consensus       149 iliG~ll~~~~~~~~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~  228 (330)
                      +.+|.++++++...++.....++++|+++||++-.++.|.+++++..|++|++..+...+-..+..+....++++.+|..
T Consensus         6 i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~s~~   85 (387)
T 3i45_A            6 IRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTFLSHV   85 (387)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECCSHHH
T ss_pred             EEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCcchHH
Confidence            45788887766543334467789999999999977765599999999999999888877766665433334455766666


Q ss_pred             eeehhhhhhcccceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecceec
Q psy8319         229 CTTVAEAAKMWNLVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRI  278 (330)
Q Consensus       229 ~~~va~~~~~w~~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~  278 (330)
                      +..++.....+++|...            .+++.++....    +..+++.+...+|++++.++.+
T Consensus        86 ~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~  151 (387)
T 3i45_A           86 GLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPN  151 (387)
T ss_dssp             HHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCS
T ss_pred             HHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            55555666666666522            24553333332    3567888888999999999754

>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B

Probab=97.05  E-value=0.00046  Score=64.87  Aligned_cols=130  Identities=11%  Similarity=0.061  Sum_probs=87.6

Q ss_pred             hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319         149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST  227 (330)
Q Consensus       149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~  227 (330)
                      +.+|.++++++..- .+.....++++|+|++|+...-..|.+++++..|++|++..+...+-..+.......++++.||.
T Consensus         5 i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~   84 (374)
T 3n0x_A            5 LKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSSA   84 (374)
T ss_dssp             EEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHH
T ss_pred             EEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCcCCEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcCCCcH
Confidence            45788888876543 24566788999999999854445699999999999999999888887766544444455677777


Q ss_pred             eeeehhhhhhcccceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecceecc
Q psy8319         228 VCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       228 ~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      .+..++.....+++|...            .+++.++....    ...++.++...+| +++.++.+.
T Consensus        85 ~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~  151 (374)
T 3n0x_A           85 AALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDY  151 (374)
T ss_dssp             HHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESS
T ss_pred             HHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCc
Confidence            666556666666655421            14554433222    2344466667788 677777643

>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}

Probab=97.03  E-value=0.00046  Score=64.04  Aligned_cols=47  Identities=17%  Similarity=0.296  Sum_probs=39.5

Q ss_pred             HHHHHhcc-eEEeeeeeEEEccCCCc-ceeEEEEEeeCCcEEEEEEEEC
Q psy8319          25 IYAAINST-QFTGVSGDVAFSSQGDR-IALTQIEQVINGSYTKLGFYDT   71 (330)
Q Consensus        25 l~~~l~~v-sF~GisG~V~Fd~nGdr-~~~y~I~q~q~~~~v~VG~y~~   71 (330)
                      +.+.|+++ +|.|++|+++||++|++ ...+.|.|+++|+++.+..++.
T Consensus       305 ~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~  353 (358)
T 3hut_A          305 LRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVIDREGH  353 (358)
T ss_dssp             HHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEEEEC-----
T ss_pred             HHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEEEEeccccc
Confidence            88999999 99999999999999998 6789999999999998888764

>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}

Probab=96.94  E-value=0.00048  Score=65.73  Aligned_cols=67  Identities=9%  Similarity=0.016  Sum_probs=45.5

Q ss_pred             HHHHHHHHHhcceEEeeeeeEEEccCCCcce-------------eEEEEEeeCCcE--EEEEEEECCCCceeecCccccC
Q psy8319          21 IADDIYAAINSTQFTGVSGDVAFSSQGDRIA-------------LTQIEQVINGSY--TKLGFYDTQADNLTWFDRERWI   85 (330)
Q Consensus        21 ~~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~-------------~y~I~q~q~~~~--v~VG~y~~~~~~l~~~~~i~W~   85 (330)
                      =++.+.++|++++|.|++|+++||++|+...             ...|.|||+|+.  +.|  |-..   . -..++.|+
T Consensus       333 ~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~~~~~~~~~~i~q~q~g~~~~~~V--~P~~---~-a~~~~~~P  406 (419)
T 3h5l_A          333 QNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETNDPSLGMPHIFSQIFDKAEDGVLI--APAP---Y-KKAGFKMP  406 (419)
T ss_dssp             HHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSCTTSSEECEEEECCCTTSCCEEE--ESTT---S-CSSCCCCC
T ss_pred             CHHHHHHHHHhCCcccCceEEEECCCCCccccccCccCCccccCCceEEEeeCCceeeEEE--CCch---h-hcCcccCC
Confidence            4567889999999999999999999999543             245899998877  543  4211   0 02467888


Q ss_pred             CCCCCCCc
Q psy8319          86 GGKVPQDR   93 (330)
Q Consensus        86 ~~~~P~s~   93 (330)
                      ...+|.|.
T Consensus       407 ~~~~~~~~  414 (419)
T 3h5l_A          407 PWMKGEGH  414 (419)
T ss_dssp             TTC-----
T ss_pred             ccccCCCc
Confidence            76666553

>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*

Probab=96.89  E-value=0.00096  Score=62.73  Aligned_cols=127  Identities=9%  Similarity=0.051  Sum_probs=91.0

Q ss_pred             hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCc-CCchhHHHHHHhhhccccEEEEeeccc
Q psy8319         149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSEC-EPGLGASVMYNLLYNNPQKLMLLAGCS  226 (330)
Q Consensus       149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c-~~~~~~t~~~~~l~~k~~ri~~i~~cs  226 (330)
                      |-||.++++++..- .+.....++++|++++|..   ..|..++++..|++| +|..+...+=..+.......++++.||
T Consensus         6 IkIG~~~plSG~~a~~G~~~~~g~~la~~~~ngg---i~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG~~~S   82 (371)
T 4f06_A            6 IKVGVIGTMSGPYALFGKNYKMGIDAWVAEHGNK---VAGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAGLYFT   82 (371)
T ss_dssp             EEEEEEECCSSTTHHHHHHHHHHHHHHHHHHCSE---ETTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEECCSH
T ss_pred             EEEEEEeCCcCchHHhHHHHHHHHHHHHHHhCCC---CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecccc
Confidence            56788888877654 2556678899999999843   468999999999997 677777766566655555555668788


Q ss_pred             ceeeehhhhhhcccceee----------cccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319         227 TVCTTVAEAAKMWNLVVK----------KVEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       227 ~~~~~va~~~~~w~~~~~----------~~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      ..+..++..+..+++|..          ...|+ .+++..     ...+++.+...+|.+++.++.+.
T Consensus        83 ~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~~~~-~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~  149 (371)
T 4f06_A           83 PNAMAVAPLLQEAKVPMVVMNAATSSITEKSPY-IVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDY  149 (371)
T ss_dssp             HHHHHHGGGHHHHTCCEEESSCCCGGGGGGCTT-EEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESS
T ss_pred             cchHHHHHHHHhhcCCccccccccchhcccCCc-ceecccchhhhhhhhhhhhhhcCceEEEEEcCCc
Confidence            777666666667776652          12455 344433     34667888899999999998653

>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A

Probab=96.88  E-value=0.00051  Score=63.19  Aligned_cols=45  Identities=20%  Similarity=0.160  Sum_probs=39.1

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEee-CCcEEEE
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVI-NGSYTKL   66 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q-~~~~v~V   66 (330)
                      ++.+.+.|++++|.|++|+++||++||+. ..|.+.|+| +|+++.|
T Consensus       299 ~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~~  345 (346)
T 1usg_A          299 PLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA  345 (346)
T ss_dssp             HHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred             HHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEec
Confidence            45678889999999999999999999987 579999999 8887754

>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}

Probab=96.75  E-value=0.0017  Score=60.20  Aligned_cols=48  Identities=19%  Similarity=0.378  Sum_probs=40.6

Q ss_pred             HHHHHHHHhcc-eEEeeeeeEEEccCCCcceeEEEEEeeCCcEEEEEEE
Q psy8319          22 ADDIYAAINST-QFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGFY   69 (330)
Q Consensus        22 ~~~l~~~l~~v-sF~GisG~V~Fd~nGdr~~~y~I~q~q~~~~v~VG~y   69 (330)
                      ++.+.+.|.++ +|.|++|+++||+|||+...+.+.|+++|+++.+...
T Consensus       303 ~~~v~~aL~~~~~~~g~~G~i~f~~~g~~~~~~~i~~v~~Gk~~~~~~v  351 (353)
T 4gnr_A          303 SGEIKDNLAXTKDFEGVTGQTSFDADHNTVKTAYMMTMNNGKVEAAEVV  351 (353)
T ss_dssp             HHHHHHHHHTCCCEEETTEEECCCTTSCCCCCEEEEEEETTEEEEEEEE
T ss_pred             HHHHHHHHHhcCCCccCceeEEECCCcCCcCCeEEEEEECCEEEEEEEe
Confidence            45677888887 6999999999999999998889999999988766543

>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}

Probab=96.71  E-value=0.0014  Score=61.02  Aligned_cols=124  Identities=10%  Similarity=0.016  Sum_probs=87.6

Q ss_pred             hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319         149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST  227 (330)
Q Consensus       149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~  227 (330)
                      ..+|.++++++..- .+....-++++|++++|+    ..|.+++++..|++|++..+...+-..+..+....++++.||.
T Consensus        17 ~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~----i~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG~~~s~   92 (366)
T 3td9_A           17 VKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT----VLGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGEVASA   92 (366)
T ss_dssp             EEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE----ETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHH
T ss_pred             EEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh----cCCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEccCCch
Confidence            46788888888664 245667889999999998    3599999999999999988877776666554455555677766


Q ss_pred             eeeehhhhhhcccceeec----------ccCceEEeeeh-----hHHHHHHH-HHhcceEeeccee
Q psy8319         228 VCTTVAEAAKMWNLVVKK----------VEPWKLYTMVT-----GLLSIDLV-ILLCWQFYDPLQR  277 (330)
Q Consensus       228 ~~~~va~~~~~w~~~~~~----------~~~~~l~~~v~-----~~~~v~li-~~~~W~~v~~~~~  277 (330)
                      .+..+++....+++|...          .+++ .+++.+     +..+++.+ ..++|++++.++.
T Consensus        93 ~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~  157 (366)
T 3td9_A           93 HSLAIAPIAEENKVPMVTPASTNPLVTQGRKF-VSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTD  157 (366)
T ss_dssp             HHHHHHHHHHHTTCCEEESSCCCGGGTTTCSS-EEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEE
T ss_pred             hHHHHHHHHHhCCCeEEecCCCCccccCCCCC-EEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence            655556666667776631          1344 344433     34566666 4479999999864

>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A

Probab=96.60  E-value=0.00078  Score=62.42  Aligned_cols=50  Identities=16%  Similarity=0.271  Sum_probs=42.0

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEccCCCcce-eEEEEEee-C--CcEEEEEEEEC
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIA-LTQIEQVI-N--GSYTKLGFYDT   71 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~-~y~I~q~q-~--~~~v~VG~y~~   71 (330)
                      ++.+.+.|++++|.|++|+++||++|++.. .+.|.|++ +  |+++.+..|.+
T Consensus       298 ~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~  351 (356)
T 3ipc_A          298 PEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSH  351 (356)
T ss_dssp             HHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC---
T ss_pred             HHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEecccc
Confidence            457888999999999999999999999875 78999999 4  89998887754

>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}

Probab=96.51  E-value=0.0027  Score=59.08  Aligned_cols=128  Identities=12%  Similarity=0.018  Sum_probs=87.2

Q ss_pred             hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319         149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST  227 (330)
Q Consensus       149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~  227 (330)
                      +.+|.+++.++... ++....-++++|++++|++-.+ .|.+++++..|+++++..+...+-..+.......++++.+|.
T Consensus         6 i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi-~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~   84 (364)
T 3lop_A            6 ISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGI-NGETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVVGTA   84 (364)
T ss_dssp             EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTB-TTBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECCCCHH
T ss_pred             EEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCc-CCeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecCCCH
Confidence            46788877765432 2344567899999999988665 499999999999999988877765555543444444566665


Q ss_pred             eeeehhh--hhhcccceeecc---------cCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319         228 VCTTVAE--AAKMWNLVVKKV---------EPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI  278 (330)
Q Consensus       228 ~~~~va~--~~~~w~~~~~~~---------~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~  278 (330)
                      .+..++.  ....+++|....         +++ .+++.+     ...+++.+...+|++++.++..
T Consensus        85 ~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~  150 (364)
T 3lop_A           85 NVEALMREGVLAEARLPLVGPATGASSMTTDPL-VFPIKASYQQEIDKMITALVTIGVTRIGVLYQE  150 (364)
T ss_dssp             HHHHHHHTTHHHHHTCCEESCSCCCGGGGSCTT-EECCSCCHHHHHHHHHHHHHHTTCCCEEEEEET
T ss_pred             HHHhhCchhhHHhcCCcEEEcccCcHhhccCCc-EEEeCCChHHHHHHHHHHHHHcCCceEEEEEeC
Confidence            5555555  556666665321         455 333332     3567788888999999998764

>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}

Probab=96.49  E-value=0.004  Score=57.55  Aligned_cols=128  Identities=16%  Similarity=0.133  Sum_probs=87.1

Q ss_pred             hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319         149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST  227 (330)
Q Consensus       149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~  227 (330)
                      +.+|.+++.++... ++.....++++|++++|++-.++ |..++++..|+++++..+...+-..+..+....++++.+|.
T Consensus         5 i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~-G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~   83 (358)
T 3hut_A            5 LLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVG-GRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDFSST   83 (358)
T ss_dssp             EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECSSHH
T ss_pred             EEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCC-CeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCCCcH
Confidence            45777777765431 23456788999999999987765 99999999999999988777665555455555555566655


Q ss_pred             eeeehhhhhhcccceeecc----------cCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319         228 VCTTVAEAAKMWNLVVKKV----------EPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI  278 (330)
Q Consensus       228 ~~~~va~~~~~w~~~~~~~----------~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~  278 (330)
                      ....++.....+++|....          .++ .+++.+     +..+++.+...+|++++.++..
T Consensus        84 ~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~  148 (358)
T 3hut_A           84 VSMAAGSIYGKEGMPQLSPTAAHPDYIKISPW-QFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVT  148 (358)
T ss_dssp             HHHHHHHHHHHHTCCEEESSCCCGGGTTSCTT-EEESSCCGGGHHHHHHHHHHHTTCCEEEEEEES
T ss_pred             HHHHHHHHHHHCCCcEEecCCCCcccccCCCe-EEEecCChHHHHHHHHHHHHHcCCCEEEEEecC
Confidence            5444455555666665321          244 333333     3566777777799999998743

>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}

Probab=96.48  E-value=0.0023  Score=60.36  Aligned_cols=127  Identities=9%  Similarity=0.009  Sum_probs=86.1

Q ss_pred             hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCC-CCc--eEEEEeecCCcCCchhHHHHHHhhhccccEEEEeec
Q psy8319         149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLL-PGF--KLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAG  224 (330)
Q Consensus       149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll-~gf--~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~  224 (330)
                      +.+|.++++++... ++....-++++|+++||++-.++ .|.  +++++..|+++++..+...+-..+..+....++++ 
T Consensus         5 i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~iiG~-   83 (391)
T 3eaf_A            5 INVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAIIGW-   83 (391)
T ss_dssp             EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEEEC-
T ss_pred             EEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEEc-
Confidence            46788888776543 24456778999999999987665 788  99999999999998888777666634444444443 


Q ss_pred             ccceeeehhhhhhcccceeec--------ccCceEEeeeh-----hHHHHHHHHH-hcceEeeccee
Q psy8319         225 CSTVCTTVAEAAKMWNLVVKK--------VEPWKLYTMVT-----GLLSIDLVIL-LCWQFYDPLQR  277 (330)
Q Consensus       225 cs~~~~~va~~~~~w~~~~~~--------~~~~~l~~~v~-----~~~~v~li~~-~~W~~v~~~~~  277 (330)
                      +|..+..++.....+++|...        ..|+ .+++.+     +..+++.+.. ++|++++.++.
T Consensus        84 ~s~~~~a~~~~~~~~~iP~i~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~  149 (391)
T 3eaf_A           84 GTADTEKLSDQVDTDKITYISASYSAKLLVKPF-NFYPAPDYSTQACSGLAFLASEFGQGKLALAYD  149 (391)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEESCCCGGGTTSTT-EECSSCCHHHHHHHHHHHHHHHHCSEEEEEEEC
T ss_pred             CcHHHHHHHHHHhhcCCeEEecccchhhcCCCc-EEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEe
Confidence            555444444555556666532        2455 344433     2345566666 69999999987

>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A

Probab=96.46  E-value=0.0033  Score=58.14  Aligned_cols=127  Identities=13%  Similarity=0.087  Sum_probs=84.6

Q ss_pred             hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319         149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST  227 (330)
Q Consensus       149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~  227 (330)
                      +.+|++++.++... ++.....++++|++++|++-.+ .|.+++++..|+++++..+...+-..+. +....++++.+|.
T Consensus         3 i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi-~G~~~~l~~~d~~~~~~~~~~~~~~l~~-~~v~~iig~~~s~   80 (356)
T 3ipc_A            3 VVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGI-NGEQIKIVLGDDVSDPKQGISVANKFVA-DGVKFVVGHANSG   80 (356)
T ss_dssp             EEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCB-TTBCEEEEEEECTTCHHHHHHHHHHHHH-TTCCEEEECSSHH
T ss_pred             EEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHH-CCCcEEEcCCCcH
Confidence            35677777655432 2345677899999999998665 7999999999999999888776655555 4444455566665


Q ss_pred             eeeehhhhhhcccceeec-------c----cCceEEeeeh-----hHHHHH-HHHHhcceEeecceec
Q psy8319         228 VCTTVAEAAKMWNLVVKK-------V----EPWKLYTMVT-----GLLSID-LVILLCWQFYDPLQRI  278 (330)
Q Consensus       228 ~~~~va~~~~~w~~~~~~-------~----~~~~l~~~v~-----~~~~v~-li~~~~W~~v~~~~~~  278 (330)
                      .+..++.....+++|...       +    +++ .+++.+     +..+++ ++..++|++++.++..
T Consensus        81 ~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~  147 (356)
T 3ipc_A           81 VSIPASEVYAENGILEITPAATNPVFTERGLWN-TFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDK  147 (356)
T ss_dssp             HHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTT-EEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECS
T ss_pred             HHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCc-EEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence            555555556666776532       1    255 344433     345566 4445699999998763

>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*

Probab=96.44  E-value=0.0031  Score=58.45  Aligned_cols=127  Identities=16%  Similarity=0.125  Sum_probs=86.9

Q ss_pred             hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319         149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST  227 (330)
Q Consensus       149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~  227 (330)
                      +.+|.+++.++... ++.....++++|++++|..   ..|.+++++..|++|++..+...+-..+..+....++++.||.
T Consensus         7 i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~~---i~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~~~s~   83 (368)
T 4eyg_A            7 FKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGDT---VAGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGFGITP   83 (368)
T ss_dssp             EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCSE---ETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHH
T ss_pred             EEEEEEeCCcCcchhccHHHHHHHHHHHHHcCCC---CCCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECCCccH
Confidence            56788888765432 2345677899999999853   5799999999999999988877776665534444455576666


Q ss_pred             eeeehhhhhhcccceeecc----------cCceEEeeeh----hHHHHHHHHHhcceEeecceec
Q psy8319         228 VCTTVAEAAKMWNLVVKKV----------EPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRI  278 (330)
Q Consensus       228 ~~~~va~~~~~w~~~~~~~----------~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~  278 (330)
                      .+..++.....+++|....          +++.++....    +..+++.+...+|++++.++.+
T Consensus        84 ~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~  148 (368)
T 4eyg_A           84 AALAAAPLATQAKVPEIVMAAGTSIITERSPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSD  148 (368)
T ss_dssp             HHHHHHHHHHHHTCCEEESSCCCGGGGGGCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred             HHHHHHHHHHhCCceEEeccCCChhhccCCCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecC
Confidence            6555556666667765321          4553333322    3567788888899999998753

>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*

Probab=96.44  E-value=0.0061  Score=56.46  Aligned_cols=50  Identities=18%  Similarity=0.372  Sum_probs=43.3

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEc-cCCCcceeEEEEEee--CCcE--EEEEEEEC
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFS-SQGDRIALTQIEQVI--NGSY--TKLGFYDT   71 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd-~nGdr~~~y~I~q~q--~~~~--v~VG~y~~   71 (330)
                      ++.+.+.|++++|.|++|+++|| ++|++...+.|.|++  +|++  +.+|.|+.
T Consensus       305 ~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~G~~~~v~~~~~~~  359 (368)
T 4eyg_A          305 GDSLIAAMKGMKWESPRGPISIDPETRDIVQNIYIRKVEKVDGELYNIEFAKFDA  359 (368)
T ss_dssp             HHHHHHHHTTCEEEETTEEEEECTTTCCEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             HHHHHHHHHcCCcccCCCCeEECcccCCcccceEEEEEEecCCeEEEEEeecccc
Confidence            56888999999999999999999 889998899999998  7765  66777763

>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}

Probab=96.14  E-value=0.0089  Score=55.71  Aligned_cols=128  Identities=14%  Similarity=0.064  Sum_probs=88.0

Q ss_pred             hhhhhhhhccccccc--ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccc
Q psy8319         149 MLVGIAFCMSLNFNL--PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCS  226 (330)
Q Consensus       149 iliG~ll~~~~~~~~--~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs  226 (330)
                      +.+|.+++.++....  +.....++++|++++|..   ..|.+++++..|++|++..+...+-..+..+....++++.+|
T Consensus         5 i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~~gg---i~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~~s   81 (375)
T 3i09_A            5 VKIGFITDMSGLYADIDGQGGLEAIKMAVADFGGK---VNGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGGTNS   81 (375)
T ss_dssp             EEEEEEECSSSTTTTTSHHHHHHHHHHHHHHHTSE---ETTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEECSCH
T ss_pred             eEEEEEeCCCcccccccCHHHHHHHHHHHHHhCCC---CCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECCCCc
Confidence            467888887776532  445778999999999532   358999999999999999888777666653545545557666


Q ss_pred             ceeeehhhhhhcccceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecceecc
Q psy8319         227 TVCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       227 ~~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      ..+..++.....+++|...            .+|+.++....    +..+++.+...+|++++.++.+.
T Consensus        82 ~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~  150 (375)
T 3i09_A           82 ATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADY  150 (375)
T ss_dssp             HHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESS
T ss_pred             HHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEeccc
Confidence            6655556666666666522            14453333322    34667788888999999987643

>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}

Probab=96.14  E-value=0.0068  Score=56.72  Aligned_cols=127  Identities=12%  Similarity=0.046  Sum_probs=88.2

Q ss_pred             hhhhhhhhccccccc--ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccc
Q psy8319         149 MLVGIAFCMSLNFNL--PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCS  226 (330)
Q Consensus       149 iliG~ll~~~~~~~~--~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs  226 (330)
                      +.+|.++++++....  +.....++++|+|++|..   ..|.+++++..|++|++..+...+-..+..+....++++.+|
T Consensus         7 i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i~gg---i~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~~s   83 (379)
T 3n0w_A            7 VTLGVLTDMSSVYADSAGKGSVAAVQLAIEDVGGK---ALGQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFDVVNS   83 (379)
T ss_dssp             CEEEEEECSSSTTTTTSHHHHHHHHHHHHHHTTTE---ETTEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEECCCH
T ss_pred             EEEEEEeCCccccccccCHHHHHHHHHHHHHhcCC---CCCeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEcCCCc
Confidence            568888888776532  445678899999999633   368999999999999998888777666653444445557666


Q ss_pred             ceeeehhhhhhcccceeec------------ccCceEEeeeh----hHHHHHHHHHhcceEeecceec
Q psy8319         227 TVCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRI  278 (330)
Q Consensus       227 ~~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~  278 (330)
                      ..+..++.....+++|...            .+|+.++....    +..+++.+...+|++++.++.+
T Consensus        84 ~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~  151 (379)
T 3n0w_A           84 GTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPD  151 (379)
T ss_dssp             HHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred             HHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecc
Confidence            6665556666667776522            14453333322    3466777888899999998764

>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}

Probab=95.85  E-value=0.0085  Score=56.22  Aligned_cols=128  Identities=4%  Similarity=-0.116  Sum_probs=83.1

Q ss_pred             hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319         149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST  227 (330)
Q Consensus       149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~  227 (330)
                      +.||.++++++... .+.....++++|++++|++-.+. |.+++++..|+++++..+...+-..+.......++++ +|.
T Consensus         8 i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig~-~s~   85 (392)
T 3lkb_A            8 VTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVP-GVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLSY-ATG   85 (392)
T ss_dssp             EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSST-TEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEEC-CHH
T ss_pred             eEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcC-CeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEeC-CcH
Confidence            56788888766542 23456778999999999886665 9999999999999998887776665554233333343 444


Q ss_pred             eeeehhhhhhcccceeec-----------ccCceEEeeeh----hHHHHHHHHH-hcceEeecceec
Q psy8319         228 VCTTVAEAAKMWNLVVKK-----------VEPWKLYTMVT----GLLSIDLVIL-LCWQFYDPLQRI  278 (330)
Q Consensus       228 ~~~~va~~~~~w~~~~~~-----------~~~~~l~~~v~----~~~~v~li~~-~~W~~v~~~~~~  278 (330)
                      .+..........++|...           .+++.++....    +..+++.+.. ++|++++.++..
T Consensus        86 ~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~  152 (392)
T 3lkb_A           86 ANLQLKPLIQELRIPTIPASMHIELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHP  152 (392)
T ss_dssp             HHHHHHHHHHHHTCCEEESCCCGGGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECS
T ss_pred             HHHHHHHHHHhCCceEEecccChhhccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence            443444444555565522           23443333332    2455666665 599999998764

>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1

Probab=95.69  E-value=0.0069  Score=55.86  Aligned_cols=44  Identities=9%  Similarity=0.057  Sum_probs=36.2

Q ss_pred             HHHhcceEEeeeeeEEEccCCCcceeEEEEEeeCCcEEEEEEEE
Q psy8319          27 AAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKLGFYD   70 (330)
Q Consensus        27 ~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~~~~v~VG~y~   70 (330)
                      +.+...+|.|+||.++||+||+......+.|+++|++++|...+
T Consensus       280 ~~~~~~~f~G~tG~i~fd~~G~~~r~l~~~~~~~G~~vpv~d~~  323 (327)
T 3ckm_A          280 RQVPGYRLSGLTGILSADTNCNVERDMTWYQYQDGAIVPVVDHH  323 (327)
T ss_dssp             HHSTTCCEEETTEEEEECTTCBEEEECEEEEEETTEEEECC---
T ss_pred             cCCCCCCceeceEEEEECCCCCCccccEEEEEECCEEEEccccc
Confidence            45567899999999999999997777788999999999988664

>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A

Probab=95.63  E-value=0.012  Score=53.93  Aligned_cols=127  Identities=15%  Similarity=0.118  Sum_probs=80.6

Q ss_pred             hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319         149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST  227 (330)
Q Consensus       149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~  227 (330)
                      +.+|.+++.++... ++.....++++|+++||++-.+ .|++++++..|+++++..+...+-..+- +....++++.||.
T Consensus         3 i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi-~G~~l~l~~~d~~~~~~~~~~~~~~l~~-~~v~~iig~~~s~   80 (346)
T 1usg_A            3 IKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGI-KGDKLVGVEYDDACDPKQAVAVANKIVN-DGIKYVIGHLCSS   80 (346)
T ss_dssp             EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTB-TTBCEEEEEEECTTCHHHHHHHHHHHHH-TTCCEEECCSSHH
T ss_pred             EEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHh-CCCCEEEcCCCcH
Confidence            34666666644321 2334567899999999998766 7999999999999998877666544443 3333344566655


Q ss_pred             eeeehhhhhhcccceeecc-----------cCceEEeeeh-----hHHHHHHHH-HhcceEeecceec
Q psy8319         228 VCTTVAEAAKMWNLVVKKV-----------EPWKLYTMVT-----GLLSIDLVI-LLCWQFYDPLQRI  278 (330)
Q Consensus       228 ~~~~va~~~~~w~~~~~~~-----------~~~~l~~~v~-----~~~~v~li~-~~~W~~v~~~~~~  278 (330)
                      .+..+.+....+++|....           +++ ++++.+     +..+++.+. .++|++++.++..
T Consensus        81 ~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~  147 (346)
T 1usg_A           81 STQPASDIYEDEGILMISPGATNPELTQRGYQH-IMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDK  147 (346)
T ss_dssp             HHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSS-EEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECS
T ss_pred             HHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCc-EEeccCChHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence            4444445555566665321           234 344433     345667764 4699999988763

>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A

Probab=95.42  E-value=0.0091  Score=55.40  Aligned_cols=127  Identities=15%  Similarity=0.113  Sum_probs=85.0

Q ss_pred             hhhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccc
Q psy8319         148 IMLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCS  226 (330)
Q Consensus       148 ~iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs  226 (330)
                      .+.+|.+++.++... ++.....++++|++++|   ....|++++++..|+++++..+...+-..+..+....++++.+|
T Consensus        16 ~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~n---g~~~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s   92 (375)
T 4evq_A           16 ALKVGLLLPYSGTYAPLGEAITRGLELYVQSQG---GKLGGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIGTVHS   92 (375)
T ss_dssp             CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTT---TEETTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEECSSH
T ss_pred             CeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhC---CCcCCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEcCCcc
Confidence            367888888765432 23456778999999998   34679999999999999998877666544443344445556665


Q ss_pred             ceeeehhhhhhcccceeec------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319         227 TVCTTVAEAAKMWNLVVKK------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI  278 (330)
Q Consensus       227 ~~~~~va~~~~~w~~~~~~------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~  278 (330)
                      ......+.....+++|...            .+++ .+++.+     +..+++.+...+|++++.++.+
T Consensus        93 ~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~  160 (375)
T 4evq_A           93 GVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPN-VFRTSFANGQIGRATGDAMIKAGLKKAVTVTWK  160 (375)
T ss_dssp             HHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTT-EEESSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred             HHHHHHHHHHHHcCceEEecCCCChhhcccCCCCC-EEEeeCChHhHHHHHHHHHHHcCCcEEEEEecC
Confidence            5544445555566666531            1455 334333     3567788888899999998754

>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A

Probab=95.27  E-value=0.019  Score=53.86  Aligned_cols=49  Identities=12%  Similarity=0.171  Sum_probs=40.9

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEccC-CCcceeEEEEEe-eCCcEEEEEEEE
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSSQ-GDRIALTQIEQV-INGSYTKLGFYD   70 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~n-Gdr~~~y~I~q~-q~~~~v~VG~y~   70 (330)
                      ++.+.+.|++++|.|++|+++||++ ++....+.|.|+ ++|+++.|..+.
T Consensus       308 ~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~~  358 (385)
T 1pea_A          308 VEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQSP  358 (385)
T ss_dssp             HHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEECS
T ss_pred             HHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecCC
Confidence            5678899999999999999999984 455667889999 788888887653

>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}

Probab=95.15  E-value=0.0056  Score=57.48  Aligned_cols=50  Identities=16%  Similarity=0.191  Sum_probs=42.9

Q ss_pred             HHHHHHHHhcce----EE-------eeeeeEEEccCCCcc-eeEEEEEeeCCcEEEEEEEEC
Q psy8319          22 ADDIYAAINSTQ----FT-------GVSGDVAFSSQGDRI-ALTQIEQVINGSYTKLGFYDT   71 (330)
Q Consensus        22 ~~~l~~~l~~vs----F~-------GisG~V~Fd~nGdr~-~~y~I~q~q~~~~v~VG~y~~   71 (330)
                      ++.+.+.|++++    |.       |++|+++||++|++. ..+.+.|+++|+++.||.|..
T Consensus       313 ~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~~~g~~~~v~~w~~  374 (392)
T 3lkb_A          313 NETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEAKGGRFVPVTEPFT  374 (392)
T ss_dssp             HHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEEETTEEEECSCCBC
T ss_pred             HHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEEeCCEEEEeccccc
Confidence            457888999997    98       999999999988864 468899999999999998864

>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*

Probab=94.36  E-value=0.036  Score=51.33  Aligned_cols=46  Identities=11%  Similarity=0.152  Sum_probs=37.7

Q ss_pred             HHHHHHHHHhcc-eEEeeeeeEEEccC---CCcceeEEEEEeeCCcEEEE
Q psy8319          21 IADDIYAAINST-QFTGVSGDVAFSSQ---GDRIALTQIEQVINGSYTKL   66 (330)
Q Consensus        21 ~~~~l~~~l~~v-sF~GisG~V~Fd~n---Gdr~~~y~I~q~q~~~~v~V   66 (330)
                      -++.+.+.|+++ +|.|++|+++||++   |+....+.+.|+++|+++.+
T Consensus       336 ~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~~  385 (386)
T 3sg0_A          336 FRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDGAFRLK  385 (386)
T ss_dssp             HHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEETTEEEEC
T ss_pred             hHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEECCEEEec
Confidence            367899999999 89999999999875   44455688999999987654

>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}

Probab=94.35  E-value=0.028  Score=52.76  Aligned_cols=50  Identities=14%  Similarity=0.312  Sum_probs=42.3

Q ss_pred             HHHHHHHHhcceEE--eeee-eEEEccCC-CcceeEEEEEe-eCCcEEEEEEEEC
Q psy8319          22 ADDIYAAINSTQFT--GVSG-DVAFSSQG-DRIALTQIEQV-INGSYTKLGFYDT   71 (330)
Q Consensus        22 ~~~l~~~l~~vsF~--GisG-~V~Fd~nG-dr~~~y~I~q~-q~~~~v~VG~y~~   71 (330)
                      ++.+.+.|++.+|.  |++| +++||++| +....+.|.|+ ++|+++.|+.|..
T Consensus       317 ~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~~G~~~~v~~~~~  371 (391)
T 3eaf_A          317 GEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGENGELQLMGKFEA  371 (391)
T ss_dssp             HHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECTTSSEEEEEEECC
T ss_pred             HHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEecCCEEEEeeeecC
Confidence            46778888888999  9999 99999754 55667899999 7999999999974

>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}

Probab=94.25  E-value=0.07  Score=49.83  Aligned_cols=50  Identities=6%  Similarity=0.125  Sum_probs=39.5

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEcc-CCCcceeEEEEEee-CCcEEEEEEEEC
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSS-QGDRIALTQIEQVI-NGSYTKLGFYDT   71 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~-nGdr~~~y~I~q~q-~~~~v~VG~y~~   71 (330)
                      ++.+.+.|++++|.|++|+++||+ +++......|.+++ ++....++.|..
T Consensus       308 ~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~~~i~~w~~  359 (387)
T 3i45_A          308 SETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDWRY  359 (387)
T ss_dssp             HHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCceeEEeeEE
Confidence            567889999999999999999996 55556667787775 444578888863

>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A

Probab=94.02  E-value=0.077  Score=49.54  Aligned_cols=128  Identities=13%  Similarity=0.011  Sum_probs=79.7

Q ss_pred             hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319         149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST  227 (330)
Q Consensus       149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~  227 (330)
                      +.+|.+++.++... +.....-++++|++++|++-.+. |++++++..|+++++..+...+-..+..+....++++.+|.
T Consensus         8 ~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~-G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~   86 (385)
T 1pea_A            8 PLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSH   86 (385)
T ss_dssp             CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBT-TBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEECCSHH
T ss_pred             eEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECCCchH
Confidence            45677766543211 23345678899999999986664 99999999999999877766554444323344444555554


Q ss_pred             eeeehhhhhhcccceeecc--------cCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319         228 VCTTVAEAAKMWNLVVKKV--------EPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI  278 (330)
Q Consensus       228 ~~~~va~~~~~w~~~~~~~--------~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~  278 (330)
                      ....+......+++|....        .++ .+++..     +..+++.+...+|++++.++..
T Consensus        87 ~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~  149 (385)
T 1pea_A           87 TRKAVMPVVERADALLCYPTPYEGFEYSPN-IVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSD  149 (385)
T ss_dssp             HHHHHHHHHHHTTCEEEECSCCCCCCCCTT-EEECSCCGGGTHHHHHHHHHTTTCSEEEEEEES
T ss_pred             HHHHHHHHHHhcCceEEECCcccCccCCCC-EEEecCChHHhHHHHHHHHHHccCcEEEEEeCC
Confidence            3333344444556655321        234 333332     3567777777789999988753

>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}

Probab=93.75  E-value=0.05  Score=50.55  Aligned_cols=40  Identities=13%  Similarity=0.163  Sum_probs=36.1

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEeeCC
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVING   61 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~~   61 (330)
                      ++.+.+.|++++|.|++|.++||+||++...+.|.|++++
T Consensus       302 ~~~l~~aL~~~~~~~~~G~~~f~~~g~~~~~~~i~~v~~~  341 (375)
T 3i09_A          302 SDKVMAQLKKMKIDDFYAKGYIRTDGSMIHDMYLMEVKKP  341 (375)
T ss_dssp             HHHHHHHHTTSCEESSSCEEEECTTSBEECCEEEEEECCG
T ss_pred             HHHHHHHHhCCCccCCCCceEECCCCCeeeeeEEEEEecc
Confidence            4678899999999999999999999999888999999854

>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*

Probab=93.19  E-value=0.17  Score=47.13  Aligned_cols=49  Identities=16%  Similarity=0.333  Sum_probs=37.7

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEccCCCc-ceeEEEEEee--CCcEE--EEEEEE
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSSQGDR-IALTQIEQVI--NGSYT--KLGFYD   70 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr-~~~y~I~q~q--~~~~v--~VG~y~   70 (330)
                      ++.+.+.|++++|.|++|+++||++|+. ...+.|.|++  +|+++  .++.|.
T Consensus       308 ~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~~~dGk~v~~~~~~~~  361 (371)
T 4f06_A          308 PDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVEKVDGKLINRELETFK  361 (371)
T ss_dssp             HHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             HHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEEecCCEEEEEEEEEEe
Confidence            4678899999999999999999987654 4467788887  67754  455554

>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*

Probab=92.73  E-value=0.038  Score=51.18  Aligned_cols=122  Identities=14%  Similarity=0.101  Sum_probs=79.5

Q ss_pred             hhhhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319         149 MLVGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST  227 (330)
Q Consensus       149 iliG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~  227 (330)
                      +.+|.+++.++... ++.....++++|++++|       |++++++..|+++++..+...+-..+..+....++++.+|.
T Consensus        28 i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~  100 (386)
T 3sg0_A           28 IKIGITMSASGPGAALGQPQSKTVAALPKEIG-------GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGSSLTP  100 (386)
T ss_dssp             EEEEEEECCSSTTHHHHHHHHHHGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCSSHH
T ss_pred             eEEEEEeccCCchhhhcHHHHHHHHHHHHHcC-------CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEECCCCch
Confidence            56788887765432 23344566777777774       78999999999999988877766655553444455566655


Q ss_pred             eeeehhhhhhcccceeec-------------ccCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319         228 VCTTVAEAAKMWNLVVKK-------------VEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI  278 (330)
Q Consensus       228 ~~~~va~~~~~w~~~~~~-------------~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~  278 (330)
                      ....+......+++|...             .+++ .+++.+     +..+++.+...+|++++.++.+
T Consensus       101 ~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~  168 (386)
T 3sg0_A          101 VSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKW-VYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFS  168 (386)
T ss_dssp             HHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGG-EEECSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred             hHHHHHHHHHhcCCeEEEecCCCccccccCCCCCc-EEecCCCcHHHHHHHHHHHHhcCCCEEEEEecC
Confidence            544445555556666521             1334 344433     3566788888899999988653

>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B

Probab=90.90  E-value=0.26  Score=45.79  Aligned_cols=39  Identities=15%  Similarity=0.241  Sum_probs=33.5

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEcc-CCCcceeEEEEEeeC
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSS-QGDRIALTQIEQVIN   60 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~-nGdr~~~y~I~q~q~   60 (330)
                      ++.+.+.|++++|.|++|+++||+ +|+....+.|.|++.
T Consensus       307 ~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~  346 (374)
T 3n0x_A          307 TEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKV  346 (374)
T ss_dssp             HHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEEC
T ss_pred             HHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEe
Confidence            467889999999999999999994 677777888999983

>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}

Probab=89.98  E-value=0.27  Score=45.62  Aligned_cols=40  Identities=8%  Similarity=0.163  Sum_probs=35.4

Q ss_pred             HHHHHHHHhcceEEeeeee-EEEccCCCcceeEEEEEeeCC
Q psy8319          22 ADDIYAAINSTQFTGVSGD-VAFSSQGDRIALTQIEQVING   61 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~-V~Fd~nGdr~~~y~I~q~q~~   61 (330)
                      ++.+.+.|++++|.|..|. ++||+||++...+.|.|++++
T Consensus       305 ~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~~~~~i~~~~~~  345 (379)
T 3n0w_A          305 PQKVFAYLKTIKFDDAVTRHGTLRPGGRLVRDMYLVRAKKP  345 (379)
T ss_dssp             HHHHHHHHTTCCBCSSSCCSBEECTTSBEECCEEEEEECCG
T ss_pred             HHHHHHHHhcCCccccCCCceeECCCCCcccceEEEEEEch
Confidence            4678899999999999984 999999999999999999854

>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*

Probab=88.76  E-value=0.89  Score=42.49  Aligned_cols=107  Identities=9%  Similarity=0.055  Sum_probs=61.4

Q ss_pred             HHHHHHHHHhhhcCCCCCCCceEEEE-eecCCcCCchhHHHHHHhhhccccEEEEeecccce-eee--hhhhhhccccee
Q psy8319         168 EPAAKLALEDVNNATDLLPGFKLQLH-WNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTV-CTT--VAEAAKMWNLVV  243 (330)
Q Consensus       168 ~~~~~~A~~~iN~~~~ll~gf~l~l~-~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~-~~~--va~~~~~w~~~~  243 (330)
                      ..+.+-|++..|.   +...++++.+ ....++||..+...+-+.+........+++.+|.. +..  ++..+..+++|+
T Consensus        17 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~   93 (364)
T 3qel_B           17 EVAIKDAHEKDDF---HHLSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPI   93 (364)
T ss_dssp             HHHHTC------------CCSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESSCCTHHHHHHHHHHHHHTCCE
T ss_pred             hhhhccccCcccc---ccCCccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCCCchHHHHHHHHHHhccCCCE
Confidence            4444555666652   2344677775 66678899888777767665433333333333322 212  455666777776


Q ss_pred             e-------------cccCceEEeeeh-----hHHHHHHHHHhcceEeecceec
Q psy8319         244 K-------------KVEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRI  278 (330)
Q Consensus       244 ~-------------~~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~  278 (330)
                      .             ..+|+ ++++++     +.++++++.+++|+.++.++.+
T Consensus        94 IS~~at~~~~lsd~~~~p~-f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d  145 (364)
T 3qel_B           94 LGIHGGSSMIMADKDESSM-FFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTY  145 (364)
T ss_dssp             EEEEGGGGSCCSSCCTTCC-EEESSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred             EEeecCCCCcCCCcccCce-EEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeC
Confidence            2             23555 445554     3688999999999999999875

>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}

Probab=81.86  E-value=1.2  Score=40.85  Aligned_cols=47  Identities=11%  Similarity=0.085  Sum_probs=34.0

Q ss_pred             HHHHHHHHhcc-eEEe-eeeeEEEccCCCcc-eeEEEEEeeCC-cEEEEEE
Q psy8319          22 ADDIYAAINST-QFTG-VSGDVAFSSQGDRI-ALTQIEQVING-SYTKLGF   68 (330)
Q Consensus        22 ~~~l~~~l~~v-sF~G-isG~V~Fd~nGdr~-~~y~I~q~q~~-~~v~VG~   68 (330)
                      ++.+.+.|+++ +|.| .+|+++||+++.+. ....+.|+++| .+..-|+
T Consensus       309 ~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~~~~~~~  359 (364)
T 3lop_A          309 REQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGLVIQEGH  359 (364)
T ss_dssp             HHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSCEEEC--
T ss_pred             HHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCccccccc
Confidence            56788999999 7999 99999999876543 34578888855 3444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	330
d1dp4a_	425	c.93.1.1 (A:) Hormone binding domain of the atrial	3e-13
d1dp4a_	425	c.93.1.1 (A:) Hormone binding domain of the atrial	3e-12
d1jdpa_	401	c.93.1.1 (A:) Hormone binding domain of the atrial	7e-12
d1jdpa_	401	c.93.1.1 (A:) Hormone binding domain of the atrial	1e-07
d1ewka_	477	c.93.1.1 (A:) Metabotropic glutamate receptor subt	2e-04
d1usga_	346	c.93.1.1 (A:) Leucine-binding protein {Escherichia	4e-04
d1qo0a_	373	c.93.1.1 (A:) Amide receptor/negative regulator of	5e-04

>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 425

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.9 bits (164), Expect = 3e-13
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 9/102 (8%)

Query: 151 VGIAFCMSLNFNLPFA---CEPAAKLALEDVNNATDLLPGFKLQLHWNDSE-----CEPG 202
           V +   ++ N + P++     PA +LAL  V    DLLPG+ +++    SE     C   
Sbjct: 5   VAVVLPLT-NTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDT 63

Query: 203 LGASVMYNLLYNNPQKLMLLAGCSTVCTTVAEAAKMWNLVVK 244
                  +L + +   + L  GC      V      W + + 
Sbjct: 64  AAPLAAVDLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPLL 105

>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 425

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.8 bits (156), Expect = 3e-12
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 22  ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQV--INGSYTKLGFYDTQADNLTWF 79
            ++I   + +  F GV+G +     GDR     +  +    G++  +  Y+  +  L   
Sbjct: 345 GENITQRMWNRSFQGVTGYLKIDRNGDRDTDFSLWDMDPETGAFRVVLNYNGTSQELMAV 404

Query: 80  DRE--RWIGGKVPQDR 93
                 W  G  P D 
Sbjct: 405 SEHKLYWPLGYPPPDV 420

>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (152), Expect = 7e-12
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 9/99 (9%)

Query: 153 IAFCMSLNFNLPFA---CEPAAKLALEDVNNA----TDLLPGFKLQLHWNDSECEPGLGA 205
           +   +  + +  F+     PA + AL  V         L PG + Q+ + DS+C      
Sbjct: 10  VLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALF 69

Query: 206 SVMYNLLYNNPQKLMLLAG--CSTVCTTVAEAAKMWNLV 242
           S++  +      K  L+ G  C      VA  A  W+L 
Sbjct: 70  SLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLP 108

>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 1e-07
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 22  ADDIYAAINSTQFTGVSGDVAFSSQGDRIA---LTQIEQVINGSYTKLGFYDTQADNLT 77
              I     +  F G++G V+  + GDR     +  +  V  G+   +G Y  +     
Sbjct: 340 GGKIIQQTWNRTFEGIAGQVSIDANGDRYGDFSVIAMTDVEAGTQEVIGDYFGKEGRFE 398

>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 477

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Metabotropic glutamate receptor subtype 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 10/60 (16%), Positives = 17/60 (28%)

Query: 156 CMSLNFNLPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNN 215
           C  +          A    L+ +N    LLP   L     DS     +        + ++
Sbjct: 32  CGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIEFIRDS 91

>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]} Length = 346

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Leucine-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 170 AAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229
            A+ A++D+N    +  G KL     D  C+P    +V  N + N+  K ++   CS+  
Sbjct: 25  GARQAIKDINAKGGIK-GDKLVGVEYDDACDPKQAVAV-ANKIVNDGIKYVIGHLCSSST 82

Query: 230 TTVAEAAKMWN 240
              ++  +   
Sbjct: 83  QPASDIYEDEG 93

>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]} Length = 373

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Amide receptor/negative regulator of the amidase operon (AmiC)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 170 AAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC 229
            A LA+E +N    +  G  ++    D   +P        + + N   + ++    S   
Sbjct: 24  GALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSHTR 82

Query: 230 TTVAEAAKMWNLVVKKVEPW 249
             V    +  + ++    P+
Sbjct: 83  KAVMPVVERADALLCYPTPY 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	330
d1dp4a_	425	Hormone binding domain of the atrial natriuretic p	99.24
d1ewka_	477	Metabotropic glutamate receptor subtype 1 {Rat (Ra	99.03
d1dp4a_	425	Hormone binding domain of the atrial natriuretic p	98.79
d1ewka_	477	Metabotropic glutamate receptor subtype 1 {Rat (Ra	98.68
d1jdpa_	401	Hormone binding domain of the atrial natriuretic p	98.53
d1jdpa_	401	Hormone binding domain of the atrial natriuretic p	98.47
d1qo0a_	373	Amide receptor/negative regulator of the amidase o	97.11
d1usga_	346	Leucine-binding protein {Escherichia coli [TaxId:	97.09
d1usga_	346	Leucine-binding protein {Escherichia coli [TaxId:	96.98
d3ckma1	317	YraM C-terminal domain {Haemophilus influenzae [Ta	95.93
d1qo0a_	373	Amide receptor/negative regulator of the amidase o	90.26
d3ckma1	317	YraM C-terminal domain {Haemophilus influenzae [Ta	89.0

>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=6.1e-12  Score=117.68  Aligned_cols=73  Identities=21%  Similarity=0.318  Sum_probs=63.9

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEee--CCcEEEEEEEECCCCceee-c-CccccCCCCCCCCcc
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVI--NGSYTKLGFYDTQADNLTW-F-DRERWIGGKVPQDRT   94 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q--~~~~v~VG~y~~~~~~l~~-~-~~i~W~~~~~P~s~~   94 (330)
                      ++++.++|++++|+|++|+|+||+||||.+.|+|.++|  +|+++.||.|+..++.+.. + ++|.|++|.+|.|.+
T Consensus       345 ~~~l~~~l~~~~f~G~tG~v~fd~nGdr~~~y~i~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~i~W~~~~~P~d~p  421 (425)
T d1dp4a_         345 GENITQRMWNRSFQGVTGYLKIDRNGDRDTDFSLWDMDPETGAFRVVLNYNGTSQELMAVSEHKLYWPLGYPPPDVP  421 (425)
T ss_dssp             HHHHHHTTTTEEEEETTEEEEECTTSBBCCCEEEEEECTTTCCEEEEEEECTTTCCEEESTTCCCCCTTSSCCCSSC
T ss_pred             HHHHHHHHhCCeEecCCeeEEECCCCCcccceEEEEEECCCCeEEEEEEEECCCCeEEecCCceeECCCCCCCCCCC
Confidence            35788999999999999999999999999999999997  5689999999977665654 3 689999999999865

>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Metabotropic glutamate receptor subtype 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=1.4e-10  Score=111.99  Aligned_cols=112  Identities=16%  Similarity=0.238  Sum_probs=90.2

Q ss_pred             HHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhc----------------------------cccEE
Q psy8319         168 EPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYN----------------------------NPQKL  219 (330)
Q Consensus       168 ~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~----------------------------k~~ri  219 (330)
                      ..|...|+|+||++..+|+|++|.+.++||.|++..++..+++.+..                            +....
T Consensus        44 ~~Am~~Aie~IN~~~~lLPn~tLg~~i~Dtc~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a  123 (477)
T d1ewka_          44 VEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIEFIRDSLISIRDEKDGLNRCLPDGQTLPPGRTKKPIAG  123 (477)
T ss_dssp             HHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHHC-----------------------------CCEEE
T ss_pred             HHHHHHHHHHHhCCCCcCCCCEEEEEEEEcCCChHHHHHHHHHHHHhhhcccccccccccccccCCccccccccccceEE
Confidence            45788899999999999999999999999999999999888876632                            11222


Q ss_pred             EEeecccceeeehhhhhhcccceee------------cccCceEEeeeh----hHHHHHHHHHhcceEeecceecc
Q psy8319         220 MLLAGCSTVCTTVAEAAKMWNLVVK------------KVEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       220 ~~i~~cs~~~~~va~~~~~w~~~~~------------~~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      +++|+||..+..++..+..|++|+.            ..+|+++++..+    +.++++++.+++|+.++.++.+.
T Consensus       124 viGp~~s~~s~~va~~~~~~~iP~IS~~ats~~lsd~~~yp~f~Rt~psd~~~~~ai~~ll~~f~W~~V~vi~~~d  199 (477)
T d1ewka_         124 VIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEG  199 (477)
T ss_dssp             EECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESS
T ss_pred             EECCCcchhHHHHHHHhhhccCceeccccCCccccccccCCceEEecccchhhHHHHHHHHHHcCCcEEEEEEecc
Confidence            3459999999999999999999982            346774444443    46889999999999999998754

>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.79  E-value=3e-09  Score=98.90  Aligned_cols=130  Identities=19%  Similarity=0.286  Sum_probs=105.6

Q ss_pred             hhhhhhhhccccc-cc-ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCC-----cCCchhHHHHHHhhhccccEEEE
Q psy8319         149 MLVGIAFCMSLNF-NL-PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSE-----CEPGLGASVMYNLLYNNPQKLML  221 (330)
Q Consensus       149 iliG~ll~~~~~~-~~-~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~-----c~~~~~~t~~~~~l~~k~~ri~~  221 (330)
                      |.+|+++++.+.- .+ +.....++++|+|+||++..+++|++|+++..|++     |++..+...+...+..+....++
T Consensus         3 i~vg~~lPltg~~~~~~~~~~~~A~~lAv~~IN~~~~~l~g~~l~~~~~D~~~~~~~~~~~~~~~~a~~~~~~~~V~aii   82 (425)
T d1dp4a_           3 LTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAVFL   82 (425)
T ss_dssp             EEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSEEE
T ss_pred             EEEEEEECCCCcccccchhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEEECCCcccccCHHHHHHHHHHHHhcCCCeEEE
Confidence            4678899987753 23 35567789999999999999999999999999986     89999999999988887776677


Q ss_pred             eecccceeeehhhhhhcccceee------------cccCceEEeeeh-----hHHHHHHHHHhcceEeecceecc
Q psy8319         222 LAGCSTVCTTVAEAAKMWNLVVK------------KVEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       222 i~~cs~~~~~va~~~~~w~~~~~------------~~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      ++.||..+..++..+..+++|+.            ..+|+ ++++++     ...+++++.++.|.+++.++.+.
T Consensus        83 G~~~S~~~~~v~~~~~~~~ip~is~~st~~~ls~~~~~~~-~~r~~p~~~~~~~~~~~~l~~~~~~~vaii~~~d  156 (425)
T d1dp4a_          83 GPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYAL-TTRTGPSHVKLGDFVTALHRRLGWEHQALVLYAD  156 (425)
T ss_dssp             CCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTT-EEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEEC
T ss_pred             CCCChHHhhhhhhhhHhhCCeEEeeecccccccccccCCc-cccccccchHHHHHHHHHHHhccCceEEEEEecc
Confidence            79999999888899999998873            23455 455554     35789999999999999987654

>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Metabotropic glutamate receptor subtype 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=1.2e-08  Score=98.08  Aligned_cols=57  Identities=25%  Similarity=0.402  Sum_probs=49.5

Q ss_pred             HHHHHHHHhcceEEeeee-eEEEccCCCcceeEEEEEee---CC--cEEEEEEEECCCCceeecC
Q psy8319          22 ADDIYAAINSTQFTGVSG-DVAFSSQGDRIALTQIEQVI---NG--SYTKLGFYDTQADNLTWFD   80 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG-~V~Fd~nGdr~~~y~I~q~q---~~--~~v~VG~y~~~~~~l~~~~   80 (330)
                      +++|+++|++++|+|+|| +|+||+|||+.+.|+|.|||   ++  .+++||.|+.  +.|++++
T Consensus       412 ~~~l~~~l~~v~F~G~tG~~v~Fd~nGd~~~~y~I~n~q~~~~~~~~~~~VG~w~~--~~l~i~~  474 (477)
T d1ewka_         412 GRKLLDFLIKSSFVGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDYVHVGTWHE--GVLNIDD  474 (477)
T ss_dssp             HHHHHHHHHTCEEECTTSCEEECCTTSCCCCCEEEEEEEECSSSCEEEEEEEEEET--TEEEECT
T ss_pred             HHHHHHHHhcCeeECCCCCEEEECCCCCccceEEEEEEEECCCCcEEEEEEEEEeC--CCccccc
Confidence            678999999999999999 69999999999999999998   23  4799999984  4577763

>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=7.4e-08  Score=88.17  Aligned_cols=57  Identities=19%  Similarity=0.345  Sum_probs=49.5

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEccCCCcceeEEEEEee---CCcEEEEEEEECCCCceee
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSSQGDRIALTQIEQVI---NGSYTKLGFYDTQADNLTW   78 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q---~~~~v~VG~y~~~~~~l~~   78 (330)
                      +..+.++|++++|.|++|+|+||+||||.+.|++.+++   +|+++.||.|+...+++.+
T Consensus       340 ~~~l~~~l~~~~f~G~tG~v~fd~~Gdr~~~~~~~~~~~~~~g~~~~Vg~~~~~~~~~~~  399 (401)
T d1jdpa_         340 GGKIIQQTWNRTFEGIAGQVSIDANGDRYGDFSVIAMTDVEAGTQEVIGDYFGKEGRFEM  399 (401)
T ss_dssp             HHHHHHHHSSEEEEETTEEEEECTTSBBCCEEEEEEEEETTTTEEEEEEEEETTTTEEEE
T ss_pred             HHHHHHHHhCCeEEcCceEEEECCCCCccCcEEEEEEEECCCCEEEEEEEEECCCceEEE
Confidence            45788999999999999999999999999999887665   6889999999987766653

>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.1e-07  Score=87.05  Aligned_cols=132  Identities=20%  Similarity=0.248  Sum_probs=96.7

Q ss_pred             hhhhhhhhhccccccc-ccchHHHHHHHHHhhhcCCC----CCCCceEEEEeecCCcCCchhHHHHHHhhhc--cccEEE
Q psy8319         148 IMLVGIAFCMSLNFNL-PFACEPAAKLALEDVNNATD----LLPGFKLQLHWNDSECEPGLGASVMYNLLYN--NPQKLM  220 (330)
Q Consensus       148 ~iliG~ll~~~~~~~~-~~~c~~~~~~A~~~iN~~~~----ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~--k~~ri~  220 (330)
                      .|-+|.+++.++..-+ +..-..+++||+|+||++-.    ++.|++++++..|++|++..+..++-.....  +...++
T Consensus         7 ~i~igvllP~tg~~~~~~~~~~~a~~lAv~~iN~~g~~~~~~~~g~~i~~~~~D~~~~~~~~~~~~~~l~~~~~~~v~~i   86 (401)
T d1jdpa_           7 KIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRVAAARGAKPDLI   86 (401)
T ss_dssp             EEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTHHHHHHHHHHHHTTTCCCSEE
T ss_pred             ccEEEEEECCCCchhhhhHHHHHHHHHHHHHHHhcCCccccCCCCcEEEEEEEeCCCCHHHHHHHHHHHHHhccCCcEEE
Confidence            4578899999887654 34446789999999998854    4679999999999999998777766554433  233445


Q ss_pred             Eeecccceeeehhhhhhcccceee-------------cccCceEEeeeh-----hHHHHHHHHHhcceEeecceeccc
Q psy8319         221 LLAGCSTVCTTVAEAAKMWNLVVK-------------KVEPWKLYTMVT-----GLLSIDLVILLCWQFYDPLQRITE  280 (330)
Q Consensus       221 ~i~~cs~~~~~va~~~~~w~~~~~-------------~~~~~~l~~~v~-----~~~~v~li~~~~W~~v~~~~~~~~  280 (330)
                      ++|.||..+..++..+..+++|..             ..+|+ ++++.+     +.++++++....|++++.++.+..
T Consensus        87 iG~~~s~~~~a~~~~~~~~~ip~is~~~~~~~~~~~~~~~~~-~fr~~~~~~~~~~al~~~l~~~~~~~v~il~~~d~  163 (401)
T d1jdpa_          87 LGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSH-LTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDK  163 (401)
T ss_dssp             ECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTT-EEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred             ECCCCcchhHHHHHHHHhcCCceeeccccccccccccccCCe-EEEeccchHHHHHHHHHHHHhcCCcEEEEEEecCc
Confidence            668999888888888888888763             12355 444443     468889999999999999987543

>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Amide receptor/negative regulator of the amidase operon (AmiC)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.11  E-value=0.00028  Score=64.13  Aligned_cols=127  Identities=13%  Similarity=0.040  Sum_probs=90.6

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      +|.++++++..- .+....-++++|+|+||++-.+. |.+++++..|++|++..+...+=..+..+...+++++.||..+
T Consensus         4 IG~~~p~tG~~a~~G~~~~~g~~lAv~~iN~~GGi~-Gr~i~l~~~D~~~~~~~a~~~a~~Li~~~~V~aiiG~~~S~~~   82 (373)
T d1qo0a_           4 IGLLFSETGVTADIERSQRYGALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSHTR   82 (373)
T ss_dssp             EEEECCSSSTTHHHHHHHHHHHHHHHHHHHHTTCBT-TBCCEEEEECCTTCHHHHHHHHHHHHHHSCCCEEEECCSHHHH
T ss_pred             EEEEcCCcCchhhhhHHHHHHHHHHHHHHHhcCCcC-CeEEEEEEEcCCCCHHHHHHHHHHHHhhCCceEEEechhhhhh
Confidence            688888877654 35566789999999999987664 9999999999999999998877666665555555567777776


Q ss_pred             eehhhhhhcccceee--------cccCceEEeeeh----hHHHHHHHHHhcceEeecceec
Q psy8319         230 TTVAEAAKMWNLVVK--------KVEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRI  278 (330)
Q Consensus       230 ~~va~~~~~w~~~~~--------~~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~  278 (330)
                      ..++......+++..        ...++.++....    ...+++.+..-.|.+++.++.+
T Consensus        83 ~av~~~~~~~~vp~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~vaii~~d  143 (373)
T d1qo0a_          83 KAVMPVVERADALLCYPTPYEGFEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSD  143 (373)
T ss_dssp             HHHHHHHHHHTCEEEECSCCCCCCCCTTEEECSCCGGGTHHHHHHHHHHHSCSEEEEEEES
T ss_pred             hhhHHHHHHhCCcEEecccccccccCCceeeeccChHHHHHHHHHHHHhccCceeeeccCC
Confidence            666655555555431        224443333322    3567777788899999988765

>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Leucine-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.0002  Score=63.74  Aligned_cols=128  Identities=16%  Similarity=0.094  Sum_probs=86.8

Q ss_pred             hhhhhhhhccccccc-ccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeecccc
Q psy8319         149 MLVGIAFCMSLNFNL-PFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCST  227 (330)
Q Consensus       149 iliG~ll~~~~~~~~-~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~  227 (330)
                      |.+|.+.++++..-. +....-++++|+|+||++-.+ .|.++++++.|++|+|..+...+=..+ .+-...++++.||.
T Consensus         3 I~IG~~~plsG~~a~~G~~~~~g~~lav~~iN~~ggi-~G~~i~lv~~D~~~~p~~a~~~~~~li-~~~~~~vig~~~s~   80 (346)
T d1usga_           3 IKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGI-KGDKLVGVEYDDACDPKQAVAVANKIV-NDGIKYVIGHLCSS   80 (346)
T ss_dssp             EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTB-TTBCEEEEEEECTTCHHHHHHHHHHHH-HTTCCEEECCSSHH
T ss_pred             EEEEEEeCCCCchHHhHHHHHHHHHHHHHHHHHcCCC-CCcEEEEEEecCCCCHHHHHHHHHHHH-hcCCccccCCccCc
Confidence            457788888765432 455677899999999988665 488999999999999999987765555 44444555677777


Q ss_pred             eeeehhhhhhcccceeec-----------ccCceEEeeeh----hHHHHHH-HHHhcceEeecceec
Q psy8319         228 VCTTVAEAAKMWNLVVKK-----------VEPWKLYTMVT----GLLSIDL-VILLCWQFYDPLQRI  278 (330)
Q Consensus       228 ~~~~va~~~~~w~~~~~~-----------~~~~~l~~~v~----~~~~v~l-i~~~~W~~v~~~~~~  278 (330)
                      .+..++.....++++...           -+++.++....    ...+.+. .....|.++..++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~  147 (346)
T d1usga_          81 STQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDK  147 (346)
T ss_dssp             HHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECS
T ss_pred             cchhhhhhhhhccccccccccCChhhhccCccccccccccchhHHHHHHhhhhhccccceeEEecCc
Confidence            766666666677766521           13454444333    2344443 456678888887764

>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Leucine-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00017  Score=64.14  Aligned_cols=44  Identities=20%  Similarity=0.172  Sum_probs=38.2

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEccCCCcc-eeEEEEEee-CCcEEE
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSSQGDRI-ALTQIEQVI-NGSYTK   65 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr~-~~y~I~q~q-~~~~v~   65 (330)
                      +..+.+.|++++|.|++|+|+||+|||+. ..|.|.||+ +|+++.
T Consensus       299 ~~~l~~al~~~~~~g~~G~v~fd~~Gd~~~~~~~v~q~~~dG~~~~  344 (346)
T d1usga_         299 PLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTK  344 (346)
T ss_dssp             HHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEE
T ss_pred             HHHHHHHHHhCCCccceEEEEECCCcCcCCCCEEEEEEEcCCeEEe
Confidence            56789999999999999999999999985 469999998 776654

>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: YraM C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.93  E-value=0.0029  Score=54.85  Aligned_cols=40  Identities=10%  Similarity=0.142  Sum_probs=34.5

Q ss_pred             HHHhcceEEeeeeeEEEccCCCcceeEEEEEeeCCcEEEE
Q psy8319          27 AAINSTQFTGVSGDVAFSSQGDRIALTQIEQVINGSYTKL   66 (330)
Q Consensus        27 ~~l~~vsF~GisG~V~Fd~nGdr~~~y~I~q~q~~~~v~V   66 (330)
                      +.+++..|.|++|+++||+||+......+.|+|+|++++|
T Consensus       278 ~~~~~~~~~G~tG~~~fd~~G~~~r~~~~~~~~~G~~vp~  317 (317)
T d3ckma1         278 RQVPGYRLSGLTGILSADTNCNVERDMTWYQYQDGAIVPV  317 (317)
T ss_dssp             HHSTTCCEEETTEEEEECTTCBEEEECEEEEEETTEEEEC
T ss_pred             hccCCCCeecCeEEEEECCCCCEeecceEEEEECCEEeEC
Confidence            4455678999999999999999877888999999988875

>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Amide receptor/negative regulator of the amidase operon (AmiC)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.26  E-value=0.16  Score=44.93  Aligned_cols=46  Identities=13%  Similarity=0.217  Sum_probs=36.2

Q ss_pred             HHHHHHHHhcceEEeeeeeEEEccCCCc-ceeEEEEEee-CCcEEEEE
Q psy8319          22 ADDIYAAINSTQFTGVSGDVAFSSQGDR-IALTQIEQVI-NGSYTKLG   67 (330)
Q Consensus        22 ~~~l~~~l~~vsF~GisG~V~Fd~nGdr-~~~y~I~q~q-~~~~v~VG   67 (330)
                      ++.+.+.|++++|.|.+|+++||.++.. ...+.|.|+| +|.+..|.
T Consensus       302 ~~~i~~aL~~~~~~~~~G~i~f~~~~~~~~~~~~i~q~~~dg~~~vv~  349 (373)
T d1qo0a_         302 VEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRW  349 (373)
T ss_dssp             HHHHHHHHSSCCEEETTEEEEECTTTSBEEBCCEEEEECTTSCEEEEE
T ss_pred             HHHHHHHHhcCceeCCceeEEEcCCCCcccCceEEEEEccCCcEEEEe
Confidence            6688899999999999999999976543 3456788998 56776663

>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: YraM C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=89.00  E-value=0.16  Score=43.07  Aligned_cols=116  Identities=9%  Similarity=-0.065  Sum_probs=70.6

Q ss_pred             hhhhhhcccccc-cccchHHHHHHHHHhhhcCCCCCCCceEEEEeecCCcCCchhHHHHHHhhhccccEEEEeeccccee
Q psy8319         151 VGIAFCMSLNFN-LPFACEPAAKLALEDVNNATDLLPGFKLQLHWNDSECEPGLGASVMYNLLYNNPQKLMLLAGCSTVC  229 (330)
Q Consensus       151 iG~ll~~~~~~~-~~~~c~~~~~~A~~~iN~~~~ll~gf~l~l~~~ds~c~~~~~~t~~~~~l~~k~~ri~~i~~cs~~~  229 (330)
                      ||.++++++..- .+....-++++|++.          -+++++..|+++++..+   +...+..+...++++|.||..+
T Consensus         3 IG~~lPlSG~~a~~G~~~~~g~~lA~~~----------~~i~l~~~D~~~~~~~a---a~~~l~~~~v~~iiGp~~s~~~   69 (317)
T d3ckma1           3 IGLLLPLSGDGQILGTTIQSGFNDAKGN----------STIPVQVFDTSMNSVQD---IIAQAKQAGIKTLVGPLLKQNL   69 (317)
T ss_dssp             EEEEECCSSTTHHHHHHHHHHHHHHHTT----------CCSCEEEEETTTSCHHH---HHHHHHHTTCCEEECCCSHHHH
T ss_pred             EEEEeCCCCccHHHHHHHHHHHHHhcCC----------CCceEEEEcCCCCHHHH---HHHHHHHcCCeEEEEcccccch
Confidence            678888877653 345566777888753          45889999999998544   3455666666666678776554


Q ss_pred             eehhh-hhhcccceee--------cccCceEEeeeh----hHHHHHHHHHhcceEeecceecc
Q psy8319         230 TTVAE-AAKMWNLVVK--------KVEPWKLYTMVT----GLLSIDLVILLCWQFYDPLQRIT  279 (330)
Q Consensus       230 ~~va~-~~~~w~~~~~--------~~~~~~l~~~v~----~~~~v~li~~~~W~~v~~~~~~~  279 (330)
                      ...+. .+....++..        ...++.++....    +..+++.+..-+|++++.++.+.
T Consensus        70 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~la~~~~~~g~k~vail~~~~  132 (317)
T d3ckma1          70 DVILADPAQIQGMDVLALNATPNSRAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQN  132 (317)
T ss_dssp             HHHHHCGGGGTTCEEEESCCCTTCCCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESS
T ss_pred             HHHHHHHHhccCceEEecccccccccccceEEeccCCHHHHHHHHhhhhhcccceeEEecccc
Confidence            33222 2222222221        123343332222    35667777778899998887644