Psyllid ID: psy8320

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MSNIFILKDLKLAEEIYFIMVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVKNYKQSAA
Secondary Structure (PSIPRED)
cccEEEEEcHHHHHHHHHHccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEHHHHHHHHHHHEEHHHHHHHHHHccccccccccccccccccccccEcccHHHHHccccccccccccccccHHHHcccccccccccHHHHHHccccHccccEEEEccccccccc
Coil and Loop (DISEMBL)
MSNIFILKDLKLAEEIYFIMVCSKCEKKlgkvitpdnwksgsrntiesggrrigenkaltaskarfnpytqkfesckicrQKVHQVGSHYCQACAYKKGICAMCGKKLLDVknykqsaa
Flexible Loop (DISEMBL)
msnifilkdlklaEEIYFIMVCSKCEKKlgkvitpdnwksgsrntiesggrrigenkaltaskarfnpytQKFESCKICRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVknykqsaa
Low Complexity Region (SEG)
MSNIFILKDLKLAEEIYFIMVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVKNYKQSAA
Disordered region (IsUnstruct)
***IFILKDLKLAEEIYFIMVCSKCEKKLGKVITPDNW*************************ARFNPYTQKFESCKICRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVK*******
Disordered Region (DISOPRED)
*SNIFILKDLKLAEEIYFIMVCSKCEKKLGKVITP***************************************SCKICRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVKNYK****
Disordered Region (DISEMBL)
MSNIFILKDLKLAEEIYFIMVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVKNYKQSAA
Disordered Region (DISPRO)
*SNIFILKDLKLAEEIYFIMVCSKCEKKLGKVITPDNWKS**********RRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVKNY*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNIFILKDLKLAEEIYFIMVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVKNYKQSAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
MGI|MGI:1929655	101	Cript "cysteine-rich PDZ-bindi	0.831	0.980	0.73	8.7e-40
RGD|621545	101	Cript "cysteine-rich PDZ-bindi	0.831	0.980	0.73	8.7e-40
UNIPROTKB|Q3ZC66	101	CRIPT "Cysteine-rich PDZ-bindi	0.831	0.980	0.73	1.8e-39
UNIPROTKB|Q9P021	101	CRIPT "Cysteine-rich PDZ-bindi	0.831	0.980	0.73	1.8e-39
UNIPROTKB|Q5ZKB6	101	CRIPT "Cysteine-rich PDZ-bindi	0.831	0.980	0.71	2.1e-38
ZFIN|ZDB-GENE-050417-451	101	cript "cysteine-rich PDZ-bindi	0.831	0.980	0.7	2.1e-38
TAIR|locus:2195738	98	AT1G61780 "AT1G61780" [Arabido	0.806	0.979	0.612	6.2e-30
WB|WBGene00044614	99	C36B1.14 [Caenorhabditis elega	0.798	0.959	0.43	9.5e-18
ASPGD|ASPL0000067618	135	AN7283 [Emericella nidulans (t	0.537	0.474	0.447	3.2e-10

MGI|MGI:1929655 Cript "cysteine-rich PDZ-binding protein" [Mus musculus (taxid:10090)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 73/100 (73%), Positives = 86/100 (86%)

Query:    20 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQ-KFESCKI 78
             MVC KCEKKLG+VITPD WK G+RNT ESGGR++ ENKALT+ KARF+PY + KF +C+I
Sbjct:     1 MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60

Query:    79 CRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVKNYKQSA 118
             C+  VHQ GSHYCQ CAYKKGICAMCGKK+LD KNYKQ++
Sbjct:    61 CKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTS 100

GO:0005737 "cytoplasm" evidence=IEA

GO:0014069 "postsynaptic density" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0031122 "cytoplasmic microtubule organization" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043197 "dendritic spine" evidence=ISO

GO:0043198 "dendritic shaft" evidence=ISO

GO:0045184 "establishment of protein localization" evidence=ISO

GO:0045202 "synapse" evidence=IEA

RGD|621545 Cript "cysteine-rich PDZ-binding protein" [Rattus norvegicus (taxid:10116)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 73/100 (73%), Positives = 86/100 (86%)

Query:    20 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQ-KFESCKI 78
             MVC KCEKKLG+VITPD WK G+RNT ESGGR++ ENKALT+ KARF+PY + KF +C+I
Sbjct:     1 MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60

Query:    79 CRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVKNYKQSA 118
             C+  VHQ GSHYCQ CAYKKGICAMCGKK+LD KNYKQ++
Sbjct:    61 CKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTS 100

GO:0005737 "cytoplasm" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0031122 "cytoplasmic microtubule organization" evidence=IDA

GO:0032403 "protein complex binding" evidence=IPI

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043197 "dendritic spine" evidence=IDA

GO:0043198 "dendritic shaft" evidence=IDA

GO:0045184 "establishment of protein localization" evidence=IDA

UNIPROTKB|Q3ZC66 CRIPT "Cysteine-rich PDZ-binding protein" [Bos taurus (taxid:9913)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 73/100 (73%), Positives = 85/100 (85%)

Query:    20 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQ-KFESCKI 78
             MVC KCEKKLG VITPD WK G+RNT ESGGR++ ENKALT+ KARF+PY + KF +C+I
Sbjct:     1 MVCEKCEKKLGTVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60

Query:    79 CRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVKNYKQSA 118
             C+  VHQ GSHYCQ CAYKKGICAMCGKK+LD KNYKQ++
Sbjct:    61 CKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTS 100

GO:0045202 "synapse" evidence=IEA

GO:0043197 "dendritic spine" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

UNIPROTKB|Q9P021 CRIPT "Cysteine-rich PDZ-binding protein" [Homo sapiens (taxid:9606)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 73/100 (73%), Positives = 85/100 (85%)

Query:    20 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQ-KFESCKI 78
             MVC KCEKKLG VITPD WK G+RNT ESGGR++ ENKALT+ KARF+PY + KF +C+I
Sbjct:     1 MVCEKCEKKLGTVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60

Query:    79 CRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVKNYKQSA 118
             C+  VHQ GSHYCQ CAYKKGICAMCGKK+LD KNYKQ++
Sbjct:    61 CKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTS 100

GO:0030054 "cell junction" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0031122 "cytoplasmic microtubule organization" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043198 "dendritic shaft" evidence=IEA

GO:0045184 "establishment of protein localization" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5ZKB6 CRIPT "Cysteine-rich PDZ-binding protein" [Gallus gallus (taxid:9031)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 71/100 (71%), Positives = 84/100 (84%)

Query:    20 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQ-KFESCKI 78
             MVC KCE+KLG VITPD WK G+RNT ESGGR++ ENKALT+ KARF+PY + KF  C+I
Sbjct:     1 MVCEKCERKLGTVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFAICRI 60

Query:    79 CRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVKNYKQSA 118
             C+  VHQ GSHYCQ CAYKKGIC+MCGKK+LD KNYKQ++
Sbjct:    61 CKSSVHQPGSHYCQGCAYKKGICSMCGKKVLDTKNYKQTS 100

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-050417-451 cript "cysteine-rich PDZ-binding protein" [Danio rerio (taxid:7955)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 70/100 (70%), Positives = 84/100 (84%)

Query:    20 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQK-FESCKI 78
             MVC KCEKKLG+VITPD WK G+RNT ESGGR++ ENK LT+ KARF+PY +  F +C+I
Sbjct:     1 MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKLNENKMLTSKKARFDPYGKSGFATCRI 60

Query:    79 CRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVKNYKQSA 118
             C+  VHQ GSHYCQ CAYKKGICAMCGKK++D KNYKQ++
Sbjct:    61 CKSSVHQSGSHYCQGCAYKKGICAMCGKKVIDTKNYKQTS 100

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

TAIR|locus:2195738 AT1G61780 "AT1G61780" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 60/98 (61%), Positives = 71/98 (72%)

Query:    20 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKIC 79
             MVC KCEKKL KVI PD WK G+RN  E GGR+I ENK L+  K R++PY+     C IC
Sbjct:     1 MVCDKCEKKLSKVIVPDKWKDGARNVTEGGGRKINENKLLS-KKNRWSPYSTCTTKCMIC 59

Query:    80 RQKVHQVGSHYCQACAYKKGICAMCGKKLLDVKNYKQS 117
             +Q+VHQ G  YC  CAY KG+CAMCGK++LD K YKQS
Sbjct:    60 KQQVHQDGK-YCHTCAYSKGVCAMCGKQVLDTKMYKQS 96

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

WB|WBGene00044614 C36B1.14 [Caenorhabditis elegans (taxid:6239)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 43/100 (43%), Positives = 58/100 (58%)

Query:    20 MVCSKCEKKLGKVITPDNW--KSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCK 77
             MVC  CEKKL K++  D +  K  +RN   SG + +     L   + +      K   CK
Sbjct:     1 MVCGDCEKKLTKIVGVDPYRNKKVNRNADGSGPKTVTTKNRLIGVQKKATIVGAK---CK 57

Query:    78 ICRQKVHQVGSHYCQACAYKKGICAMCGKKLLDVKNYKQS 117
             +C+  +HQ GSHYC  CAY+KGICAMCGKK+ + K  +QS
Sbjct:    58 LCKMLIHQPGSHYCSTCAYQKGICAMCGKKIQNTKGLRQS 97

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0001703 "gastrulation with mouth forming first" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0032502 "developmental process" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

ASPGD|ASPL0000067618 AN7283 [Emericella nidulans (taxid:162425)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 30/67 (44%), Positives = 38/67 (56%)

Query:    42 SRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGSHYCQACAYKKGIC 101
             +R     G   + +NK L+A KA+ NPY     SC +C+ K  Q G  YCQ CAY+K  C
Sbjct:    53 NRTKATLGNTGVSKNKLLSA-KAK-NPYAAYSSSCDMCKAKTEQ-GRKYCQRCAYQKNAC 109

Query:   102 AMCGKKL 108
              MCGK L
Sbjct:   110 PMCGKSL 116


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.133   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      119       119   0.00091  102 3  11 22  0.47    30
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  143 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.08u 0.10s 14.18t   Elapsed:  00:00:05
  Total cpu time:  14.08u 0.10s 14.18t   Elapsed:  00:00:05
  Start:  Thu Aug 15 15:37:24 2013   End:  Thu Aug 15 15:37:29 2013

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	119
pfam10235	89	pfam10235, Cript, Microtubule-associated protein C	6e-37

>gnl|CDD|220641 pfam10235, Cript, Microtubule-associated protein CRIPT

 Score =  120 bits (302), Expect = 6e-37
 Identities = 58/90 (64%), Positives = 67/90 (74%), Gaps = 1/90 (1%)

Query: 30  GKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGSH 89
            K+ TPD WK G+RNT   GGR+I +NK L+  KA+ NPY Q    CKIC+ KVHQ GS 
Sbjct: 1   TKLATPDVWKKGARNTATLGGRKINKNKLLS-KKAKRNPYAQYSSKCKICKTKVHQKGSK 59

Query: 90  YCQACAYKKGICAMCGKKLLDVKNYKQSAA 119
           YCQ CAYKKGICAMCGKK+LD KNYKQS+ 
Sbjct: 60  YCQRCAYKKGICAMCGKKILDTKNYKQSSV 89

The CRIPT protein is a cytoskeletal protein involved in microtubule production. The C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners. SAP90 is concentrated in the post synaptic density of glutamatergic neurons. Length = 89

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
KOG3476|consensus	100		100.0
PF10235	90	Cript: Microtubule-associated protein CRIPT; Inter	100.0
PF10217	92	DUF2039: Uncharacterized conserved protein (DUF203	94.91
COG5152	259	Uncharacterized conserved protein, contains RING a	91.27
PF12773	50	DZR: Double zinc ribbon	90.29
KOG3241|consensus	227		90.09
PRK14559	645	putative protein serine/threonine phosphatase; Pro	81.03

>KOG3476|consensus

Probab=100.00  E-value=2.5e-56  Score=319.83  Aligned_cols=100  Identities=68%  Similarity=1.234  Sum_probs=97.8

Q ss_pred             cchhHHHhhhccccCCCCCCCCCCccccCCCeecccccchhhhhhccCCCcccCccchhhhhhcccCCCccCcccccccc
Q psy8320          20 MVCSKCEKKLGKVITPDNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGSHYCQACAYKKG   99 (119)
Q Consensus        20 MVC~KCEKKL~klatPD~~k~Gs~~~~~~g~rki~eNKlLs~~k~r~~Py~~~~~~C~iCK~~vhq~g~~YCq~CAYkkG   99 (119)
                      |||+||||||++|++|||||+|+||++++|+|+|+|||.|.+.++||+||+..+.+|+|||+.|||+|+||||.|||+||
T Consensus         1 MVC~kCEkKLskvi~pd~wr~garn~~~sGgrkinenkaL~s~k~r~~p~gt~~~kC~iCk~~vHQ~GshYC~tCAY~Kg   80 (100)
T KOG3476|consen    1 MVCEKCEKKLSKVIGPDPWRDGARNTTESGGRKINENKALISKKKRATPYGTALAKCRICKQLVHQPGSHYCQTCAYKKG   80 (100)
T ss_pred             CchhHHHHHhccccccCcccccccccCCCCCeecchhhhhhhhhhhcCccccccchhHHHHHHhcCCcchhHhHhhhhhh
Confidence            99999999999999999999999999999999999999888878999999999999999999999999999999999999


Q ss_pred             cccccCcccccccccccccC
Q psy8320         100 ICAMCGKKLLDVKNYKQSAA  119 (119)
Q Consensus       100 iCamCGKki~Dt~~ykqS~~  119 (119)
                      |||||||+|+||++|+||++
T Consensus        81 iCAMCGKki~nTK~ykQsst  100 (100)
T KOG3476|consen   81 ICAMCGKKILNTKNYKQSST  100 (100)
T ss_pred             HHHHhhhHhhccccccccCC
Confidence            99999999999999999986

>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production

Probab=100.00  E-value=5.7e-48  Score=273.56  Aligned_cols=88  Identities=66%  Similarity=1.194  Sum_probs=83.9

Q ss_pred             ccccCCCCCCCCC--CccccCCCeecccccchhhhhhccCCCcccCccchhhhhhcccCCCccCcccccccccccccCcc
Q psy8320          30 GKVITPDNWKSGS--RNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGSHYCQACAYKKGICAMCGKK  107 (119)
Q Consensus        30 ~klatPD~~k~Gs--~~~~~~g~rki~eNKlLs~~k~r~~Py~~~~~~C~iCK~~vhq~g~~YCq~CAYkkGiCamCGKk  107 (119)
                      ++||||||||+|+  +++.++|+|+||||||||+. ++ |||++++++|++||++|||+|+||||.|||++||||||||+
T Consensus         1 tklatPd~~k~~~~~~~~~~~g~r~i~eNKlLs~~-~~-nPy~~~~~~C~~CK~~v~q~g~~YCq~CAYkkGiCamCGKk   78 (90)
T PF10235_consen    1 TKLATPDPWKKGAMYRNTAESGGRKIGENKLLSKK-KK-NPYAPYSSKCKICKTKVHQPGAKYCQTCAYKKGICAMCGKK   78 (90)
T ss_pred             CccccCCccccCcccccccCCCCccccceeeeccc-cc-CcccccCccccccccccccCCCccChhhhcccCcccccCCe
Confidence            4799999999999  99999999999999999873 44 99999999999999999999999999999999999999999


Q ss_pred             cccccccccccC
Q psy8320         108 LLDVKNYKQSAA  119 (119)
Q Consensus       108 i~Dt~~ykqS~~  119 (119)
                      |+||++|+||+|
T Consensus        79 i~dtk~ykqs~v   90 (90)
T PF10235_consen   79 ILDTKNYKQSSV   90 (90)
T ss_pred             ecccccccccCC
Confidence            999999999987

This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].

>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues

Probab=94.91  E-value=0.0032  Score=45.29  Aligned_cols=41  Identities=37%  Similarity=0.808  Sum_probs=33.4

Q ss_pred             cCCCcccCccchhhhh-hcccCCCccCcccccccccccccCcc
Q psy8320          66 FNPYTQKFESCKICRQ-KVHQVGSHYCQACAYKKGICAMCGKK  107 (119)
Q Consensus        66 ~~Py~~~~~~C~iCK~-~vhq~g~~YCq~CAYkkGiCamCGKk  107 (119)
                      |-|..+ .++|-.|.+ .|.+.=|..|+.||-..++||.||++
T Consensus        49 YKpLt~-p~kC~~C~qktVk~AYh~iC~~Ca~~~~vCaKC~k~   90 (92)
T PF10217_consen   49 YKPLTQ-PKKCNKCQQKTVKHAYHVICDPCAKELKVCAKCGKP   90 (92)
T ss_pred             cccCCC-CccccccccchHHHHHHHHHHHHHHhhccCcccCCC
Confidence            334433 469999996 67777788999999999999999986

The region is conserved from plants to humans but its function is unknown.

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=91.27  E-value=0.052  Score=44.94  Aligned_cols=34  Identities=41%  Similarity=1.117  Sum_probs=27.9

Q ss_pred             cchhhhhhc-----ccCCCccCcccc---cccc-cccccCccc
Q psy8320          75 SCKICRQKV-----HQVGSHYCQACA---YKKG-ICAMCGKKL  108 (119)
Q Consensus        75 ~C~iCK~~v-----hq~g~~YCq~CA---YkkG-iCamCGKki  108 (119)
                      .|.|||...     ..-||++|..||   |++| .|-.||+..
T Consensus       198 ~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         198 LCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             eehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence            899999753     344999999999   6776 799999864

>PF12773 DZR: Double zinc ribbon

Probab=90.29  E-value=0.19  Score=30.56  Aligned_cols=33  Identities=24%  Similarity=0.673  Sum_probs=19.4

Q ss_pred             chhhhhhcccCCCccCcccccccc-------cccccCcccc
Q psy8320          76 CKICRQKVHQVGSHYCQACAYKKG-------ICAMCGKKLL  109 (119)
Q Consensus        76 C~iCK~~vhq~g~~YCq~CAYkkG-------iCamCGKki~  109 (119)
                      |..|.+.+.. ++.||..|-..-.       +|.-||..+.
T Consensus         1 Cp~Cg~~~~~-~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~   40 (50)
T PF12773_consen    1 CPHCGTPNPD-DAKFCPHCGTPLPPPDQSKKICPNCGAENP   40 (50)
T ss_pred             CCCcCCcCCc-cccCChhhcCChhhccCCCCCCcCCcCCCc
Confidence            4455555555 4666666655444       5777776654

>KOG3241|consensus

Probab=90.09  E-value=0.025  Score=46.06  Aligned_cols=46  Identities=28%  Similarity=0.755  Sum_probs=37.2

Q ss_pred             ccCCCcccCccchhhhh-hcccCCCccCcccccccccccccCcccccc
Q psy8320          65 RFNPYTQKFESCKICRQ-KVHQVGSHYCQACAYKKGICAMCGKKLLDV  111 (119)
Q Consensus        65 r~~Py~~~~~~C~iCK~-~vhq~g~~YCq~CAYkkGiCamCGKki~Dt  111 (119)
                      +|-|.+. ..+|..|+. .|.|.-|..|..||-...+||-|+|.+.++
T Consensus        60 KYKpLt~-akkC~kC~~r~Vk~aYH~~Cr~CA~e~~vCAKC~ks~~~i  106 (227)
T KOG3241|consen   60 KYKPLTE-AKKCQKCTKRNVKQAYHKLCRGCAKEQKVCAKCCKSVDQI  106 (227)
T ss_pred             cccccch-hHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhccHHHh
Confidence            3455544 459999987 788888899999999999999999976543

>PRK14559 putative protein serine/threonine phosphatase; Provisional

Probab=81.03  E-value=0.9  Score=41.77  Aligned_cols=35  Identities=23%  Similarity=0.651  Sum_probs=28.1

Q ss_pred             ccchhhhhhcccCCCccCccccccc--ccccccCcccc
Q psy8320          74 ESCKICRQKVHQVGSHYCQACAYKK--GICAMCGKKLL  109 (119)
Q Consensus        74 ~~C~iCK~~vhq~g~~YCq~CAYkk--GiCamCGKki~  109 (119)
                      ..|..|...+.. +++||+.|-.+-  ..|+-||..+.
T Consensus         2 ~~Cp~Cg~~n~~-~akFC~~CG~~l~~~~Cp~CG~~~~   38 (645)
T PRK14559          2 LICPQCQFENPN-NNRFCQKCGTSLTHKPCPQCGTEVP   38 (645)
T ss_pred             CcCCCCCCcCCC-CCccccccCCCCCCCcCCCCCCCCC
Confidence            378899988876 889999998774  36888888765

---

Homologous Structure Templates

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
1m3v_A	122	FLIN4, fusion of the LIM interacting domain of LDB	87.88
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	86.69
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	86.26
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	85.99
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	84.87
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	83.47
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	80.38

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=87.88  E-value=0.091  Score=35.94  Aligned_cols=36  Identities=17%  Similarity=0.351  Sum_probs=28.3

Q ss_pred             cchhhhhhcc--------cCCCccCcccccc----cccccccCccccc
Q psy8320          75 SCKICRQKVH--------QVGSHYCQACAYK----KGICAMCGKKLLD  110 (119)
Q Consensus        75 ~C~iCK~~vh--------q~g~~YCq~CAYk----kGiCamCGKki~D  110 (119)
                      +|..|+..+.        .+|..||..|-.+    +|.|+.|++.|.+
T Consensus        34 ~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~   81 (122)
T 1m3v_A           34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG   81 (122)
T ss_dssp             CCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred             CcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence            7788877773        3467899999875    4699999999985

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.69  E-value=0.32  Score=29.33  Aligned_cols=37  Identities=19%  Similarity=0.680  Sum_probs=28.2

Q ss_pred             ccchhhhhhcccC-----CCccCccccc-----ccccccccCccccc
Q psy8320          74 ESCKICRQKVHQV-----GSHYCQACAY-----KKGICAMCGKKLLD  110 (119)
Q Consensus        74 ~~C~iCK~~vhq~-----g~~YCq~CAY-----kkGiCamCGKki~D  110 (119)
                      -.|.||...+..+     ||.||..|..     ....|.+|...+..
T Consensus        16 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           16 YKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             EECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             CCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            4788887765443     8899999986     24579999998864

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=86.26  E-value=0.23  Score=30.50  Aligned_cols=36  Identities=31%  Similarity=0.782  Sum_probs=27.8

Q ss_pred             ccchhhhhhccc-----CCCccCcccccc-----------cccccccCcccc
Q psy8320          74 ESCKICRQKVHQ-----VGSHYCQACAYK-----------KGICAMCGKKLL  109 (119)
Q Consensus        74 ~~C~iCK~~vhq-----~g~~YCq~CAYk-----------kGiCamCGKki~  109 (119)
                      -.|.||......     =||.||..|...           ...|.+|...+.
T Consensus        13 ~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~   64 (79)
T 2egp_A           13 VTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS   64 (79)
T ss_dssp             CEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred             CCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence            378888765543     388999999874           668999999875

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.99  E-value=0.3  Score=29.99  Aligned_cols=36  Identities=31%  Similarity=0.774  Sum_probs=28.7

Q ss_pred             ccchhhhhhccc-----CCCccCcccccc----------cccccccCcccc
Q psy8320          74 ESCKICRQKVHQ-----VGSHYCQACAYK----------KGICAMCGKKLL  109 (119)
Q Consensus        74 ~~C~iCK~~vhq-----~g~~YCq~CAYk----------kGiCamCGKki~  109 (119)
                      ..|.||...+..     =||.||..|...          ...|.+|...+.
T Consensus        20 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecv_A           20 VTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ   70 (85)
T ss_dssp             CCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred             CCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence            478888876543     388999999865          678999999876

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=84.87  E-value=0.18  Score=30.40  Aligned_cols=35  Identities=31%  Similarity=0.789  Sum_probs=25.4

Q ss_pred             cchhhhh-hc---------ccCCCccCccccccc-----ccccccCcccc
Q psy8320          75 SCKICRQ-KV---------HQVGSHYCQACAYKK-----GICAMCGKKLL  109 (119)
Q Consensus        75 ~C~iCK~-~v---------hq~g~~YCq~CAYkk-----GiCamCGKki~  109 (119)
                      .|.||.. ..         ..=||.||..|..+-     ..|.+|++.+.
T Consensus         5 ~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   54 (65)
T 1g25_A            5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR   54 (65)
T ss_dssp             CCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred             cCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence            6777777 22         234889999997433     57999999885

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=83.47  E-value=0.34  Score=29.73  Aligned_cols=36  Identities=28%  Similarity=0.750  Sum_probs=28.5

Q ss_pred             ccchhhhhhccc-----CCCccCcccccc----------cccccccCcccc
Q psy8320          74 ESCKICRQKVHQ-----VGSHYCQACAYK----------KGICAMCGKKLL  109 (119)
Q Consensus        74 ~~C~iCK~~vhq-----~g~~YCq~CAYk----------kGiCamCGKki~  109 (119)
                      -.|.||...+..     =||.||..|...          ...|.+|...+.
T Consensus        20 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecw_A           20 VTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP   70 (85)
T ss_dssp             TSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred             CCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence            479999876543     388999999865          668999999876

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=80.38  E-value=0.74  Score=27.54  Aligned_cols=38  Identities=24%  Similarity=0.638  Sum_probs=27.8

Q ss_pred             ccchhhhhhcccC------CCccCcccccc----cccccccCcccccc
Q psy8320          74 ESCKICRQKVHQV------GSHYCQACAYK----KGICAMCGKKLLDV  111 (119)
Q Consensus        74 ~~C~iCK~~vhq~------g~~YCq~CAYk----kGiCamCGKki~Dt  111 (119)
                      ..|.||...+..+      ||.||..|..+    ...|.+|...+...
T Consensus         6 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   53 (68)
T 1chc_A            6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV   53 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred             CCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence            4677776655432      78899999853    57899999988644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00