Psyllid ID: psy8325

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------

MLRVRGIVQNLTVNSLFSRIANATLQNLCTDTVKHTELKCWKCLKNLSGKNLFCQYCSSVQKPDSQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSLQNISIEEDTKGTDQKLLMEILMLNEELDEASSEEDLEKLQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTLVSKVRDKKNQLELDKHSK

ccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc

ccEEEEEEEEccHHHHHHHHHHHHHHHHccccHcccccccccccccccccccccHcccccccccccccHHHHccccccccccHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccHcccccHHHHHHHHHHHHHHHHHccHHcHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc

MLRVRGIVQNLTVNSLFSRIANATLQNLCTDTVKHTELKCWKclknlsgknlfcqycssvqkpdsqsnyydlfdlKLTYLINNVDLSKKFKQLQsqlhpdkfsnknQEEQAISETYSSYLNKAYSILQNPLERGLYLLSLqnisieedtkgtDQKLLMEILMLNEeldeasseEDLEKLQTLIQATIDDLTKnvnasfeqkdFNQAKDLLIRMKYFTTLVSKVRDkknqleldkhsk

MLRVRGIVQNLTVNSLFSRIANATLQNLCTDTVKHTELKCWKCLKNLSGKNLFCQYCSSVQKPDSQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHpdkfsnknqEEQAISETYSSYLNKAYSILQNPLERGLYLLSLQNISIEEDTKGTDQKLLMEILMLNEELDEASSEEDLEKLQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTlvskvrdkknqleldkhsk

MLRVRGIVQNLTVNSLFSRIANATLQNLCTDTVKHTELKCWKCLKNLSGKNLFCQYCSSVQKPDSQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSLQNISIEEDTKGTDQKllmeilmlneeldeasseedleKLQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTLVSKVRDKKNQLELDKHSK

***VRGIVQNLTVNSLFSRIANATLQNLCTDTVKHTELKCWKCLKNLSGKNLFCQYCSSVQKPDSQSNYYDLFDLKLTYLINNVDLSKKF************************TYSSYLNKAYSILQNPLERGLYLLSLQNISIEEDTKGTDQKLLMEILML***************LQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTLVSK***************

*******VQNL****************************CWKCLKNLSGKNLFCQYCSSVQKPDSQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHP******************SYLNKAYSILQNPLERGLYLLSLQNIS******GTDQKLLMEILMLNEELDEASSEEDLEKLQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTLVSKVRDKKN*********

MLRVRGIVQNLTVNSLFSRIANATLQNLCTDTVKHTELKCWKCLKNLSGKNLFCQYCSSVQKPDSQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSLQNISIEEDTKGTDQKLLMEILMLNEEL********LEKLQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTLVSKVRDK***********

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		237
RGD\|1311005		234	Hscb "HscB iron-sulfur cluster	0.831	0.841	0.343	5.4e-31
ZFIN\|ZDB-GENE-070705-97		267	si:ch211-207k7.4 "si:ch211-207	0.848	0.752	0.338	2.1e-29
MGI\|MGI:2141135		234	Hscb "HscB iron-sulfur cluster	0.810	0.820	0.331	4.4e-29
UNIPROTKB\|Q8IWL3		235	HSCB "Iron-sulfur cluster co-c	0.797	0.804	0.326	8.2e-28
UNIPROTKB\|F1MLK9		235	HSCB "Uncharacterized protein"	0.797	0.804	0.326	1.3e-27
UNIPROTKB\|F6UZ83		235	HSCB "Uncharacterized protein"	0.810	0.817	0.311	1.9e-26
FB\|FBgn0263606		240	l(3)72Do "lethal (3) 72Do" [Dr	0.805	0.795	0.291	2.5e-26
UNIPROTKB\|E2QU61		225	HSCB "Uncharacterized protein"	0.751	0.791	0.318	3.6e-25
UNIPROTKB\|F1N857		239	F1N857 "Uncharacterized protei	0.877	0.870	0.282	8e-21
WB\|WBGene00001033		211	dnj-15 [Caenorhabditis elegans	0.839	0.943	0.279	3.5e-20

RGD\|1311005 Hscb "HscB iron-sulfur cluster co-chaperone homolog (E. coli)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 69/201 (34%), Positives = 110/201 (54%)

Query:    34 KHTELKCWKCLKNLS---GKNLFCQYCSSVQKPDSQSNYYDLFDLKLTYLINNVDLSKKF 90
             K  E +CW C + +    G   FC +C ++Q PD   +Y+ L +   ++ ++   L +++
Sbjct:    34 KSIEPQCWNCGRAMGAGRGDEFFCAHCRALQPPDPTRDYFSLMNCNQSFRVDIRKLQQRY 93

Query:    91 KQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSLQNISIEEDTK 150
             +QLQ  +HPD FS K+Q E+  SE +S+ +N AY  LQ P+ RGLYLL LQ I I E T 
Sbjct:    94 QQLQRLVHPDFFSQKSQTEKRFSEKHSTLVNDAYKTLQAPVSRGLYLLKLQGIEIPEGTD 153

Query:   151 -GTDQKXXXXXXXXXXXXXXXXXXXXXXKLQTLIQATIDDLTKNVNASFEQKDFNQAKDL 209
               TD +                      +++  ++A   + T N+N +FEQ DF +AK+L
Sbjct:   154 YRTDSQFLVEIMEINEKLADAKSEAAMEEVEATVRAKQKEFTDNINRAFEQGDFEKAKEL 213

Query:   210 LIRMKYFTTLVSKVRDKKNQL 230
             L +M+YF+ +  K++  KN L
Sbjct:   214 LTKMRYFSNIEEKIKLSKNPL 234

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006457 "protein folding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;ISO

GO:0051087 "chaperone binding" evidence=IEA

GO:0051259 "protein oligomerization" evidence=IEA

ZFIN\|ZDB-GENE-070705-97 si:ch211-207k7.4 "si:ch211-207k7.4" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:2141135 Hscb "HscB iron-sulfur cluster co-chaperone homolog (E. coli)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8IWL3 HSCB "Iron-sulfur cluster co-chaperone protein HscB, mitochondrial" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MLK9 HSCB "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F6UZ83 HSCB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

FB\|FBgn0263606 l(3)72Do "lethal (3) 72Do" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QU61 HSCB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N857 F1N857 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

WB\|WBGene00001033 dnj-15 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		237
PRK05014		171	PRK05014, hscB, co-chaperone HscB; Provisional	5e-23
PRK00294		173	PRK00294, hscB, co-chaperone HscB; Provisional	2e-17
PRK03578		176	PRK03578, hscB, co-chaperone HscB; Provisional	9e-17
TIGR00714		155	TIGR00714, hscB, Fe-S protein assembly co-chaperon	2e-16
COG1076		174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	5e-14
PRK01356		166	PRK01356, hscB, co-chaperone HscB; Provisional	2e-13
pfam07743		78	pfam07743, HSCB_C, HSCB C-terminal oligomerisation	5e-13
PRK01773		173	PRK01773, hscB, co-chaperone HscB; Provisional	2e-11
pfam00226		63	pfam00226, DnaJ, DnaJ domain	3e-07
cd06257		55	cd06257, DnaJ, DnaJ domain or J-domain	2e-05
smart00271		60	smart00271, DnaJ, DnaJ molecular chaperone homolog	1e-04
PRK06330		718	PRK06330, PRK06330, transcript cleavage factor/unk	3e-04
PRK14299		291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	0.004

>gnl\|CDD\|179914 PRK05014, hscB, co-chaperone HscB; Provisional	Back alignment and domain information

 Score = 91.1 bits (227), Expect = 5e-23
 Identities = 49/169 (28%), Positives = 88/169 (52%), Gaps = 9/169 (5%)

Query: 68  NYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSIL 127
           +Y+ LF L   Y I+   L+ ++++LQ Q HPDKF+N ++ E+ ++   ++ +N AY  L
Sbjct: 2   DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTL 61

Query: 128 QNPLERGLYLLSLQNISIE-EDTKGTDQKLLMEILMLNEELDEASSEED----LEKLQTL 182
           ++PL+R  YLLSL    +  E     D   LME + L EEL++    +D    LE     
Sbjct: 62  KHPLKRAEYLLSLHGFDLAHEQHTVRDTAFLMEQMELREELEDIEQSKDPEAALESFIKR 121

Query: 183 IQATIDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTLVSKVRDKKNQLE 231
           ++       + +    + + ++ A D + ++K+      K+R +  QLE
Sbjct: 122 VKKMFKTRLQQMVEQLDNEAWDAAADTVRKLKFL----DKLRSEVEQLE 166

Length = 171

>gnl\|CDD\|166894 PRK00294, hscB, co-chaperone HscB; Provisional	Back alignment and domain information

>gnl\|CDD\|235133 PRK03578, hscB, co-chaperone HscB; Provisional	Back alignment and domain information

>gnl\|CDD\|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB	Back alignment and domain information

>gnl\|CDD\|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|167217 PRK01356, hscB, co-chaperone HscB; Provisional	Back alignment and domain information

>gnl\|CDD\|219548 pfam07743, HSCB_C, HSCB C-terminal oligomerisation domain	Back alignment and domain information

>gnl\|CDD\|179335 PRK01773, hscB, co-chaperone HscB; Provisional	Back alignment and domain information

>gnl\|CDD\|215804 pfam00226, DnaJ, DnaJ domain	Back alignment and domain information

>gnl\|CDD\|99751 cd06257, DnaJ, DnaJ domain or J-domain	Back alignment and domain information

>gnl\|CDD\|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain	Back alignment and domain information

>gnl\|CDD\|235780 PRK06330, PRK06330, transcript cleavage factor/unknown domain fusion protein; Validated	Back alignment and domain information

>gnl\|CDD\|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		237
PRK01773		173	hscB co-chaperone HscB; Provisional	100.0
PRK03578		176	hscB co-chaperone HscB; Provisional	100.0
PRK05014		171	hscB co-chaperone HscB; Provisional	100.0
PRK01356		166	hscB co-chaperone HscB; Provisional	100.0
PRK00294		173	hscB co-chaperone HscB; Provisional	100.0
TIGR00714		157	hscB Fe-S protein assembly co-chaperone HscB. This	100.0
KOG3192\|consensus		168		100.0
COG1076		174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	99.87
PF07743		78	HSCB_C: HSCB C-terminal oligomerisation domain; In	99.76
COG0484		371	DnaJ DnaJ-class molecular chaperone with C-termina	99.71
PF00226		64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.66
KOG0713\|consensus		336		99.65
PRK14288		369	chaperone protein DnaJ; Provisional	99.58
KOG0718\|consensus		546		99.57
smart00271		60	DnaJ DnaJ molecular chaperone homology domain.	99.55
PRK14296		372	chaperone protein DnaJ; Provisional	99.54
PRK14286		372	chaperone protein DnaJ; Provisional	99.54
PRK14282		369	chaperone protein DnaJ; Provisional	99.52
PRK14279		392	chaperone protein DnaJ; Provisional	99.52
PRK14295		389	chaperone protein DnaJ; Provisional	99.52
PRK14297		380	chaperone protein DnaJ; Provisional	99.52
PRK14301		373	chaperone protein DnaJ; Provisional	99.51
cd06257		55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.51
PRK14294		366	chaperone protein DnaJ; Provisional	99.5
KOG0716\|consensus		279		99.5
PRK14287		371	chaperone protein DnaJ; Provisional	99.5
PRK14277		386	chaperone protein DnaJ; Provisional	99.5
PRK14298		377	chaperone protein DnaJ; Provisional	99.49
PRK14299		291	chaperone protein DnaJ; Provisional	99.49
PRK14284		391	chaperone protein DnaJ; Provisional	99.48
PRK14276		380	chaperone protein DnaJ; Provisional	99.48
PRK14281		397	chaperone protein DnaJ; Provisional	99.48
PRK14280		376	chaperone protein DnaJ; Provisional	99.48
PRK14291		382	chaperone protein DnaJ; Provisional	99.48
PRK14285		365	chaperone protein DnaJ; Provisional	99.47
PRK10767		371	chaperone protein DnaJ; Provisional	99.47
PTZ00341		1136	Ring-infected erythrocyte surface antigen; Provisi	99.46
PTZ00037		421	DnaJ_C chaperone protein; Provisional	99.45
PRK14292		371	chaperone protein DnaJ; Provisional	99.45
PRK14290		365	chaperone protein DnaJ; Provisional	99.45
PRK14293		374	chaperone protein DnaJ; Provisional	99.45
PRK14278		378	chaperone protein DnaJ; Provisional	99.44
PRK14283		378	chaperone protein DnaJ; Provisional	99.44
PRK14300		372	chaperone protein DnaJ; Provisional	99.44
PRK14289		386	chaperone protein DnaJ; Provisional	99.43
PRK10266		306	curved DNA-binding protein CbpA; Provisional	99.43
TIGR02349		354	DnaJ_bact chaperone protein DnaJ. This model repre	99.42
KOG0712\|consensus		337		99.41
KOG0719\|consensus		264		99.35
KOG0715\|consensus		288		99.35
KOG0717\|consensus		508		99.33
KOG0691\|consensus		296		99.33
TIGR03835		871	termin_org_DnaJ terminal organelle assembly protei	99.32
COG2214		237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.3
KOG0721\|consensus		230		99.24
PHA03102		153	Small T antigen; Reviewed	99.23
KOG0624\|consensus		504		99.07
PRK09430		267	djlA Dna-J like membrane chaperone protein; Provis	99.05
KOG0722\|consensus		329		99.02
KOG0720\|consensus		490		99.01
PTZ00100		116	DnaJ chaperone protein; Provisional	98.87
COG5407		610	SEC63 Preprotein translocase subunit Sec63 [Intrac	98.74
PHA02624		647	large T antigen; Provisional	98.73
KOG0550\|consensus		486		98.68
KOG0714\|consensus		306		98.68
KOG1150\|consensus		250		98.58
COG5269		379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.45
KOG0568\|consensus		342		97.53
KOG1789\|consensus		2235		97.41
KOG0723\|consensus		112		96.91
PF13248		26	zf-ribbon_3: zinc-ribbon domain	96.43
KOG0431\|consensus		453		96.09
PF13240		23	zinc_ribbon_2: zinc-ribbon domain	96.02
COG1076		174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	94.86
PF10571		26	UPF0547: Uncharacterised protein family UPF0547; I	93.92
PF14687		112	DUF4460: Domain of unknown function (DUF4460)	93.54
PF09538		108	FYDLN_acid: Protein of unknown function (FYDLN_aci	93.33
TIGR02300		129	FYDLN_acid conserved hypothetical protein TIGR0230	91.1
PRK00420		112	hypothetical protein; Validated	91.0
PF09862		113	DUF2089: Protein of unknown function (DUF2089); In	88.1
PF07754		24	DUF1610: Domain of unknown function (DUF1610); Int	87.79
PF12773		50	DZR: Double zinc ribbon	87.12
COG1645		131	Uncharacterized Zn-finger containing protein [Gene	86.14
PF12773		50	DZR: Double zinc ribbon	85.17
PRK14559		645	putative protein serine/threonine phosphatase; Pro	84.66
PF09889		59	DUF2116: Uncharacterized protein containing a Zn-r	84.46
PF14803		34	Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.	84.1
PF08271		43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	81.83

>PRK01773 hscB co-chaperone HscB; Provisional	Back alignment and domain information

Probab=100.00  E-value=9.4e-46  Score=311.71  Aligned_cols=165  Identities=25%  Similarity=0.466  Sum_probs=155.9

Q ss_pred             CChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHhhc-CCCc
Q psy8325          67 SNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSLQ-NISI  145 (237)
Q Consensus        67 ~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~-g~~~  145 (237)
                      .|||++||||++|+||...|+++|++||+.+|||+|+++++.|+++|.++|+.||+||+||+||++||.|+|.++ |+++
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~~g~~~   81 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTGEQQ   81 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhccCCCC
Confidence            599999999999999999999999999999999999999999999999999999999999999999999999999 8875


Q ss_pred             c-ccccCCCHHHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhHHHHHH
Q psy8325         146 E-EDTKGTDQKLLMEILMLNEELDEAS---SEEDLEKLQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTLVS  221 (237)
Q Consensus       146 ~-e~~~~~d~efLmeimE~rE~leea~---~~~~l~~l~~~~~~~i~~~~~~l~~~f~~~d~~~A~~~l~rlkY~~~l~~  221 (237)
                      . +..+..||+|||+||||||+|+++.   +.++|..+..++++++.++...|.++|+.+||+.|+..++||+||.||.+
T Consensus        82 ~~e~~~~~d~~fLme~ME~rE~lee~~~~~d~~~L~~l~~~v~~~~~~~~~~l~~~~~~~d~~~A~~~~~rL~y~~kl~~  161 (173)
T PRK01773         82 NLEEKSTQDMAFLMQQMEWREQLEEIEQQQDEDALTAFSKEIKQEQQAILTELSTALNSQQWQQASQINDRLRFIKKLII  161 (173)
T ss_pred             CcccccCCCHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence            4 4467889999999999999999864   56779999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcc
Q psy8325         222 KVRDKKNQLE  231 (237)
Q Consensus       222 ~ik~k~~~l~  231 (237)
                      +|++..++|+
T Consensus       162 ei~~~~~~l~  171 (173)
T PRK01773        162 EIERVEEKLF  171 (173)
T ss_pred             HHHHHHHHhh
Confidence            9999888763

>PRK03578 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>PRK05014 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>PRK01356 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>PRK00294 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB	Back alignment and domain information

>KOG3192\|consensus	Back alignment and domain information

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein)	Back alignment and domain information

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []	Back alignment and domain information

>KOG0713\|consensus	Back alignment and domain information

>PRK14288 chaperone protein DnaJ; Provisional	Back alignment and domain information

>KOG0718\|consensus	Back alignment and domain information

>smart00271 DnaJ DnaJ molecular chaperone homology domain	Back alignment and domain information

>PRK14296 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14286 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14282 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14279 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14295 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14297 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14301 chaperone protein DnaJ; Provisional	Back alignment and domain information

>cd06257 DnaJ DnaJ domain or J-domain	Back alignment and domain information

>PRK14294 chaperone protein DnaJ; Provisional	Back alignment and domain information

>KOG0716\|consensus	Back alignment and domain information

>PRK14287 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14277 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14298 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14299 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14284 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14276 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14281 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14280 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14291 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14285 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK10767 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional	Back alignment and domain information

>PTZ00037 DnaJ_C chaperone protein; Provisional	Back alignment and domain information

>PRK14292 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14290 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14293 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14278 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14283 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14300 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14289 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK10266 curved DNA-binding protein CbpA; Provisional	Back alignment and domain information

>TIGR02349 DnaJ_bact chaperone protein DnaJ	Back alignment and domain information

>KOG0712\|consensus	Back alignment and domain information

>KOG0719\|consensus	Back alignment and domain information

>KOG0715\|consensus	Back alignment and domain information

>KOG0717\|consensus	Back alignment and domain information

>KOG0691\|consensus	Back alignment and domain information

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ	Back alignment and domain information

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0721\|consensus	Back alignment and domain information

>PHA03102 Small T antigen; Reviewed	Back alignment and domain information

>KOG0624\|consensus	Back alignment and domain information

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional	Back alignment and domain information

>KOG0722\|consensus	Back alignment and domain information

>KOG0720\|consensus	Back alignment and domain information

>PTZ00100 DnaJ chaperone protein; Provisional	Back alignment and domain information

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]	Back alignment and domain information

>PHA02624 large T antigen; Provisional	Back alignment and domain information

>KOG0550\|consensus	Back alignment and domain information

>KOG0714\|consensus	Back alignment and domain information

>KOG1150\|consensus	Back alignment and domain information

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0568\|consensus	Back alignment and domain information

>KOG1789\|consensus	Back alignment and domain information

>KOG0723\|consensus	Back alignment and domain information

>PF13248 zf-ribbon_3: zinc-ribbon domain	Back alignment and domain information

>KOG0431\|consensus	Back alignment and domain information

>PF13240 zinc_ribbon_2: zinc-ribbon domain	Back alignment and domain information

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines	Back alignment and domain information

>PF14687 DUF4460: Domain of unknown function (DUF4460)	Back alignment and domain information

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues	Back alignment and domain information

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300	Back alignment and domain information

>PRK00420 hypothetical protein; Validated	Back alignment and domain information

>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins	Back alignment and domain information

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species	Back alignment and domain information

>PF12773 DZR: Double zinc ribbon	Back alignment and domain information

>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]	Back alignment and domain information

>PF12773 DZR: Double zinc ribbon	Back alignment and domain information

>PRK14559 putative protein serine/threonine phosphatase; Provisional	Back alignment and domain information

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown	Back alignment and domain information

>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C	Back alignment and domain information

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		237
3bvo_A		207	CO-chaperone protein HSCB, mitochondrial precurso;	8e-49
3hho_A		174	CO-chaperone protein HSCB homolog; structural geno	4e-40
1fpo_A		171	HSC20, chaperone protein HSCB; molecular chaperone	1e-38
3uo3_A		181	J-type CO-chaperone JAC1, mitochondrial; structura	5e-35
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
1gh6_A		114	Large T antigen; tumor suppressor, oncoprotein, an	6e-05
2pf4_E		174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	9e-05
1n4c_A		182	Auxilin; four helix bundle, protein binding; NMR {	1e-04

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207	Back alignment and structure

 Score =  158 bits (401), Expect = 8e-49
 Identities = 73/196 (37%), Positives = 120/196 (61%), Gaps = 4/196 (2%)

Query: 39  KCWKC---LKNLSGKNLFCQYCSSVQKPDSQSNYYDLFDLKLTYLINNVDLSKKFKQLQS 95
           +CW C            FC  C ++Q PD   +Y+ L D   ++ ++   L  +++QLQ 
Sbjct: 12  RCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQR 71

Query: 96  QLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSLQNISIEEDTKGT-DQ 154
            +HPD FS ++Q E+  SE +S+ +N AY  L  PL RGLYLL L  I I E T    D+
Sbjct: 72  LVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDR 131

Query: 155 KLLMEILMLNEELDEASSEEDLEKLQTLIQATIDDLTKNVNASFEQKDFNQAKDLLIRMK 214
           + L+EI+ +NE+L EA SE  +++++++++A   + T NV+++FEQ DF +AK++L +M+
Sbjct: 132 QFLIEIMEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMR 191

Query: 215 YFTTLVSKVRDKKNQL 230
           YF+ +  K++ KK  L
Sbjct: 192 YFSNIEEKIKLKKIPL 207

PyMOL of 3bvo

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171	Back alignment and structure

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114	Back alignment and structure

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174	Back alignment and structure

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		237
3bvo_A		207	CO-chaperone protein HSCB, mitochondrial precurso;	100.0
3hho_A		174	CO-chaperone protein HSCB homolog; structural geno	100.0
1fpo_A		171	HSC20, chaperone protein HSCB; molecular chaperone	100.0
3uo3_A		181	J-type CO-chaperone JAC1, mitochondrial; structura	100.0
2l6l_A		155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.85
1wjz_A		94	1700030A21RIK protein; J-domain, DNAJ like protein	99.74
2dn9_A		79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.69
2ej7_A		82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.69
2qsa_A		109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.68
2yua_A		99	Williams-beuren syndrome chromosome region 18 prot	99.68
2ctp_A		78	DNAJ homolog subfamily B member 12; J-domain, chap	99.67
2cug_A		88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.67
1hdj_A		77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.67
2ctr_A		88	DNAJ homolog subfamily B member 9; J-domain, chape	99.65
2och_A		73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.65
2dmx_A		92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.65
2lgw_A		99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.64
2ctw_A		109	DNAJ homolog subfamily C member 5; J-domain, chape	99.63
2ctq_A		112	DNAJ homolog subfamily C member 12; J-domain, chap	99.63
2o37_A		92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.61
1bq0_A		103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.59
2ys8_A		90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.58
1faf_A		79	Large T antigen; J domain, HPD motif, anti-paralle	99.55
1gh6_A		114	Large T antigen; tumor suppressor, oncoprotein, an	99.53
3apq_A		210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.52
2pf4_E		174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.49
1n4c_A		182	Auxilin; four helix bundle, protein binding; NMR {	99.46
1iur_A		88	KIAA0730 protein; DNAJ like domain, riken structur	99.44
2guz_A		71	Mitochondrial import inner membrane translocase su	99.4
3ag7_A		106	Putative uncharacterized protein F9E10.5; J-domain	99.39
3lz8_A		329	Putative chaperone DNAJ; structure genomics, struc	99.35
2qwo_B		92	Putative tyrosine-protein phosphatase auxilin; cha	99.28
3apo_A		780	DNAJ homolog subfamily C member 10; PDI family, th	99.19
2y4t_A		450	DNAJ homolog subfamily C member 3; chaperone, endo	98.58
2guz_B		65	Mitochondrial import inner membrane translocase su	98.15
1pft_A		50	TFIIB, PFTFIIBN; N-terminal domain, transcription	83.23

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=7.9e-55  Score=375.17  Aligned_cols=200  Identities=36%  Similarity=0.699  Sum_probs=186.0

Q ss_pred             cccccCCCCCCcCCCC---CCCCCccCcCCCcccCCCCCCChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCH
Q psy8325          31 DTVKHTELKCWKCLKN---LSGKNLFCQYCSSVQKPDSQSNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQ  107 (237)
Q Consensus        31 ~~~~~~~~~Cw~C~~~---~~~~~~fC~~C~~~qp~~~~~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~  107 (237)
                      +++.+.+..||+|+.+   +....+||++|+.+|||....|||++|||+++|++|..+|+++||+|++++|||++++.++
T Consensus         4 ~~~~~~~~~Cw~C~~~~~~~~~~~~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~   83 (207)
T 3bvo_A            4 SQAGSNYPRCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQ   83 (207)
T ss_dssp             -------CBCSSSCCBCCSSCSCCCBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCH
T ss_pred             cccCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCH
Confidence            3444567799999997   5678999999999999998999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCcchhhHHHHhhcCCCcccc-ccCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q psy8325         108 EEQAISETYSSYLNKAYSILQNPLERGLYLLSLQNISIEED-TKGTDQKLLMEILMLNEELDEASSEEDLEKLQTLIQAT  186 (237)
Q Consensus       108 ~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g~~~~e~-~~~~d~efLmeimE~rE~leea~~~~~l~~l~~~~~~~  186 (237)
                      .++..|.+.|+.||+||+||+||.+|+.|++.++|+++.++ .+.+||+|||++|||||+|+++.+.++|.++..+++.+
T Consensus        84 ~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G~~~~~e~~~~~d~~fLme~me~~E~le~~~~~~~l~~l~~~~~~~  163 (207)
T 3bvo_A           84 TEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAAMKEIESIVKAK  163 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCCSSCSSSSCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcCCCcccccccCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999876 78999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Q psy8325         187 IDDLTKNVNASFEQKDFNQAKDLLIRMKYFTTLVSKVRDKKNQL  230 (237)
Q Consensus       187 i~~~~~~l~~~f~~~d~~~A~~~l~rlkY~~~l~~~ik~k~~~l  230 (237)
                      ++++.+.|.++|+.+||+.|+..++|||||.||.++|++++.+|
T Consensus       164 ~~~~~~~l~~~~~~~d~~~A~~~v~kL~y~~kl~~~i~~~~~~~  207 (207)
T 3bvo_A          164 QKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL  207 (207)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999998875

PyMOL of 3bvo

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1	Back alignment and structure

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A	Back alignment and structure

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}	Back alignment and structure

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1	Back alignment and structure

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}	Back alignment and structure

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1	Back alignment and structure

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A	Back alignment and structure

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}	Back alignment and structure

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}	Back alignment and structure

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A	Back alignment and structure

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1	Back alignment and structure

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1	Back alignment and structure

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}	Back alignment and structure

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C	Back alignment and structure

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J	Back alignment and structure

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1	Back alignment and structure

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}	Back alignment and structure

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}	Back alignment and structure

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A	Back alignment and structure

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A	Back alignment and structure

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}	Back alignment and structure

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A	Back alignment and structure

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}	Back alignment and structure

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		237
d1fpoa2		95	a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligo	2e-12
d1fpoa1		76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	9e-12
d1nz6a_		98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	3e-04

>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]} Length = 95	Back information, alignment and structure


class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: HSC20 (HSCB), C-terminal oligomerisation domain
family: HSC20 (HSCB), C-terminal oligomerisation domain
domain: HSC20 (HSCB), C-terminal oligomerisation domain
species: Escherichia coli [TaxId: 562]

 Score = 59.0 bits (143), Expect = 2e-12
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 147 EDTKGTDQKLLMEILMLNEELDEASSEEDLEKLQTL---IQATIDDLTKNVNASFEQKDF 203
           E     D   LME L L EELDE    +D  +L++    ++   D   + +    + + +
Sbjct: 6   EQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETW 65

Query: 204 NQAKDLLIRMKYFTTLVSKVRDKKNQLE 231
           + A D   ++++   L S     + +L 
Sbjct: 66  DAAADTCRKLRFLDKLRSSAEQLEEKLL 93

PyMOL of d1fpoa2

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76	Back information, alignment and structure

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		237
d1fpoa1		76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.9
d1fpoa2		95	HSC20 (HSCB), C-terminal oligomerisation domain {E	99.79
d1wjza_		94	CSL-type zinc finger-containing protein 3 (J-domai	99.76
d1xbla_		75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.71
d1hdja_		77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1fafa_		79	Large T antigen, the N-terminal J domain {Murine p	99.63
d1gh6a_		114	Large T antigen, the N-terminal J domain {Simian v	99.61
d1nz6a_		98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.48
d1iura_		88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.31
d1k3xa3		40	Endonuclease VIII {Escherichia coli [TaxId: 562]}	81.4
d1ee8a3		56	DNA repair protein MutM (Fpg) {Thermus thermophilu	80.13

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=9.1e-25  Score=157.84  Aligned_cols=76  Identities=41%  Similarity=0.679  Sum_probs=73.7

Q ss_pred             CChhhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHhhcC
Q psy8325          67 SNYYDLFDLKLTYLINNVDLSKKFKQLQSQLHPDKFSNKNQEEQAISETYSSYLNKAYSILQNPLERGLYLLSLQN  142 (237)
Q Consensus        67 ~nyf~llgl~~~f~id~~~Lk~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~In~AY~tL~dp~~Ra~Yll~l~g  142 (237)
                      .|||++|||+++|++|.++|+++||++++.+|||++++.++.++..+.+.++.||+||+||+||.+|+.|+++|.|
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l~g   76 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHG   76 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTT
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccC
Confidence            4899999999999999999999999999999999999999999999999999999999999999999999999987

PyMOL of d1fpoa1

>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}	Back information, alignment and structure

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}	Back information, alignment and structure

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1k3xa3 g.39.1.8 (A:223-262) Endonuclease VIII {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ee8a3 g.39.1.8 (A:211-266) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure