Psyllid ID: psy8359

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
MLVAVLISSNGISSVSLNKSKTRAWNRDTCSSLFPPRKQALSTHEKSPIQISIKVNVSSVEKVDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTSKLEGMFKDMELSKDINVAFKQYMGNLKEDKESTSNNALGIDLTDADLRRTLQSLACGKTRVLKKTPASRDIEDCDRFRFNNDFTFKLFRIKINQIQMKETNEEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNYMA
cEEEEEEcccccccccccccccHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccEEEccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccEEEcc
ccEEEEEccccHHHHcccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccHHHHHHccccccHHHHHHHHHcEEcHHHHHHHHHHHHccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccEEEcc
MLVAVLISSngissvslnksktrawnrdtcsslfpprkqalsthekspiqISIKVNVSSVEKVDLAKRLLVGKSASVDAEKSMLSKLKqecgggftsklEGMFKDMELSKDINVAFKQYMGNlkedkestsnnalgidltdADLRRTLQSLACgktrvlkktpasrdiedcdrfrfnndftfKLFRIKINQIQMKETNEEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFNqlkfpvkpaDLKKRIESLIdrdymerdkdkansynyma
MLVAVLIssngissvslnksktrawnrdtcsslfpprkqalsthekspiqisikvnvssvekVDLAKRLlvgksasvdAEKSMLSKLKQECGGGFTSKLEGMFKDMELSKDINVAFKQYMGNLKEDKESTSNNALGIDLTDADLRRTLQSlacgktrvlkktpasrdiedcdrfrfnndftfKLFRIKINQIqmketneeqkateervfqdrqYQIDAAIVRIMKMRKTLSHNLLLSELFnqlkfpvkpadlkkrieslidrdymerdkdkansynyma
MLVAVLISSNGISSVSLNKSKTRAWNRDTCSSLFPPRKQALSTHEKSPIQISIKVNVSSVEKVDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTSKLEGMFKDMELSKDINVAFKQYMGNLKEDKESTSNNALGIDLTDADLRRTLQSLACGKTRVLKKTPASRDIEDCDRFRFNNDFTFKLFRIKINQIQMKETNEEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNYMA
*************************************************QISIKVNVSSVEKVDLAKRLLVG*********************GFTSKLEGMFKDMELSKDINVAFKQYMG*************LGIDLTDADLRRTLQSLACGKTRVLKKTPASRDIEDCDRFRFNNDFTFKLFRIKINQIQ**************VFQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIE*L********************
MLVAVLISS***************WNRDTCSSLFPPR*****THEKSPIQISIKVNVSSVEKVDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTSKLEGMFKDMELSKDINVAFKQYMGNLKEDKESTSNNALGIDLTDADLRRTLQSLACGKTR**********IEDCDRFRFNNDFTFKLFRIKINQIQ****************QDRQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNYMA
MLVAVLISSNGISSVSLNKSKTRAWNRDTCSSLFPP***********PIQISIKVNVSSVEKVDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTSKLEGMFKDMELSKDINVAFKQYMGNLKEDKESTSNNALGIDLTDADLRRTLQSLACGKTRVLKKTPASRDIEDCDRFRFNNDFTFKLFRIKINQIQMKE**********RVFQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNYMA
MLVAVLISSNGISSVSLNKSKTRAWNRDTCSSLFPPRKQALSTHEKSPIQISIKVNVSSVEKVDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTSKLEGMFKDMELSKDINVAFKQYMGNLKEDKESTSNNALGIDLTDADLRRTLQSLACGKTRVLKKTPASRDIEDCDRFRFNNDFTFKLFRIKINQIQMKETNEEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNYM*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLVAVLISSNGISSVSLNKSKTRAWNRDTCSSLFPPRKQALSTHEKSPIQISIKVNVSSVEKVDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTSKLEGMFKDMELSKDINVAFKQYMGNLKEDKESTSNNALGIDLTDADLRRTLQSLACGKTRVLKKTPASRDIEDCDRFRFNNDFTFKLFRIKINQIQMKETNEEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNYMA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query279 2.2.26 [Sep-21-2011]
A2A432970 Cullin-4B OS=Mus musculus yes N/A 0.519 0.149 0.782 5e-62
Q13620913 Cullin-4B OS=Homo sapiens yes N/A 0.516 0.157 0.787 1e-61
Q3TCH7759 Cullin-4A OS=Mus musculus no N/A 0.516 0.189 0.773 8e-61
Q13619759 Cullin-4A OS=Homo sapiens no N/A 0.516 0.189 0.767 2e-60
Q8LGH4792 Cullin-4 OS=Arabidopsis t yes N/A 0.505 0.178 0.702 1e-54
Q54CS2802 Cullin-4 OS=Dictyostelium yes N/A 0.412 0.143 0.591 5e-33
Q9ZVH4732 Cullin-3A OS=Arabidopsis no N/A 0.508 0.193 0.486 3e-29
Q13618768 Cullin-3 OS=Homo sapiens no N/A 0.508 0.184 0.466 7e-28
Q6GPF3768 Cullin-3-B OS=Xenopus lae N/A N/A 0.508 0.184 0.466 7e-28
Q6DE95768 Cullin-3-A OS=Xenopus lae N/A N/A 0.508 0.184 0.466 7e-28
>sp|A2A432|CUL4B_MOUSE Cullin-4B OS=Mus musculus GN=Cul4b PE=1 SV=1 Back     alignment and function desciption
 Score =  237 bits (605), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 115/147 (78%), Positives = 127/147 (86%), Gaps = 2/147 (1%)

Query: 133 NALGIDLTDADLRRTLQSLACGKTRVLKKTPASRDIEDCDRFRFNNDFTFKLFRIKINQI 192
           +A GI+  D +LRRTLQSLACGK RVL K P  +DIED D+F  N+DF  KLFRIKINQI
Sbjct: 826 HATGIE--DGELRRTLQSLACGKARVLAKNPKGKDIEDGDKFICNDDFKHKLFRIKINQI 883

Query: 193 QMKETNEEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADL 252
           QMKET EEQ +T ERVFQDRQYQIDAAIVRIMKMRKTLSHNLL+SE++NQLKFPVKPADL
Sbjct: 884 QMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADL 943

Query: 253 KKRIESLIDRDYMERDKDKANSYNYMA 279
           KKRIESLIDRDYMERDK+  N YNY+A
Sbjct: 944 KKRIESLIDRDYMERDKENPNQYNYIA 970
Core component of multiple cullin-RING-based E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The functional specificity of the E3 ubiquitin-protein ligase complex depends on the variable substrate recognition subunit. CUL4B may act within the complex as a scaffold protein, contributing to catalysis through positioning of the substrate and the ubiquitin-conjugating enzyme. Plays a role as part of the E3 ubiquitin-protein ligase complex in polyubiquitination of CDT1, histone H2A, histone H3 and histone H4 in response to radiation-induced DNA damage. Targeted to UV damaged chromatin by DDB2 and may be important for DNA repair and DNA replication. Required for ubiquitination of cyclin E, and consequently, normal G1 cell cycle progression. Regulates the mammalian target-of-rapamycin (mTOR) pathway involved in control of cell growth, size and metabolism. Specific CUL4B regulation of the mTORC1-mediated pathway is dependent upon 26S proteasome function and requires interaction between CUL4B and MLST8.
Mus musculus (taxid: 10090)
>sp|Q13620|CUL4B_HUMAN Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=4 Back     alignment and function description
>sp|Q3TCH7|CUL4A_MOUSE Cullin-4A OS=Mus musculus GN=Cul4a PE=1 SV=1 Back     alignment and function description
>sp|Q13619|CUL4A_HUMAN Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3 Back     alignment and function description
>sp|Q8LGH4|CUL4_ARATH Cullin-4 OS=Arabidopsis thaliana GN=CUL4 PE=1 SV=1 Back     alignment and function description
>sp|Q54CS2|CUL4_DICDI Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 SV=1 Back     alignment and function description
>sp|Q9ZVH4|CUL3A_ARATH Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1 Back     alignment and function description
>sp|Q13618|CUL3_HUMAN Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2 Back     alignment and function description
>sp|Q6GPF3|CUL3B_XENLA Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1 Back     alignment and function description
>sp|Q6DE95|CUL3A_XENLA Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query279
327268019 685 PREDICTED: cullin-4A-like [Anolis caroli 0.781 0.318 0.693 3e-83
395754387 646 PREDICTED: LOW QUALITY PROTEIN: cullin-4 0.774 0.334 0.633 6e-83
39104458 737 mKIAA0695 protein [Mus musculus] 0.774 0.293 0.548 3e-65
340717949 814 PREDICTED: cullin-4B-like [Bombus terres 0.491 0.168 0.845 6e-65
110759504 814 PREDICTED: cullin-4B-like [Apis mellifer 0.491 0.168 0.845 6e-65
380012510 814 PREDICTED: cullin-4B-like [Apis florea] 0.491 0.168 0.845 6e-65
195455180 821 GK23161 [Drosophila willistoni] gi|19417 0.505 0.171 0.843 1e-64
307199383 844 Cullin-4B [Harpegnathos saltator] 0.508 0.168 0.830 3e-64
383864366 814 PREDICTED: cullin-4B-like [Megachile rot 0.491 0.168 0.830 4e-64
194757543 821 GF11213 [Drosophila ananassae] gi|190622 0.505 0.171 0.836 5e-64
>gi|327268019|ref|XP_003218796.1| PREDICTED: cullin-4A-like [Anolis carolinensis] Back     alignment and taxonomy information
 Score =  314 bits (804), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 161/232 (69%), Positives = 180/232 (77%), Gaps = 14/232 (6%)

Query: 62  KVDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTSKLEGMFKDMELSKDINVAFKQ--- 118
           K DLAKRLLVGKSASVDAEKSMLSKLK ECG  FTSKLEGMFKDMELSKDI V FKQ   
Sbjct: 454 KKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVQFKQGKK 513

Query: 119 -----------YMGNLKEDKESTSNNALGIDLTDADLRRTLQSLACGKTRVLKKTPASRD 167
                      ++     D+ S     +   + +++L+RTLQSLACGK RVL K+P  +D
Sbjct: 514 EFQVSLFQTLVFLMFNDGDEFSFEEIKMATGIEESELKRTLQSLACGKARVLNKSPRGKD 573

Query: 168 IEDCDRFRFNNDFTFKLFRIKINQIQMKETNEEQKATEERVFQDRQYQIDAAIVRIMKMR 227
           +ED D+F FN DF  KLFRIKINQIQMKET EEQ +T ERVFQDRQYQIDAAIVRIMKMR
Sbjct: 574 VEDGDKFIFNADFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMR 633

Query: 228 KTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNYMA 279
           KTL HNLL+SEL+NQLKFPVKP DLKKRIESLIDR+YMERDKD  N Y+Y+A
Sbjct: 634 KTLGHNLLVSELYNQLKFPVKPGDLKKRIESLIDREYMERDKDNPNQYHYVA 685

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Class:

Phylum: Chordata

Superkingdom: Eukaryota
>gi|395754387|ref|XP_002832107.2| PREDICTED: LOW QUALITY PROTEIN: cullin-4B [Pongo abelii] Back     alignment and taxonomy information
>gi|39104458|dbj|BAC41443.3| mKIAA0695 protein [Mus musculus] Back     alignment and taxonomy information
>gi|340717949|ref|XP_003397436.1| PREDICTED: cullin-4B-like [Bombus terrestris] gi|350400361|ref|XP_003485810.1| PREDICTED: cullin-4B-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|110759504|ref|XP_392800.3| PREDICTED: cullin-4B-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380012510|ref|XP_003690323.1| PREDICTED: cullin-4B-like [Apis florea] Back     alignment and taxonomy information
>gi|195455180|ref|XP_002074597.1| GK23161 [Drosophila willistoni] gi|194170682|gb|EDW85583.1| GK23161 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|307199383|gb|EFN80008.1| Cullin-4B [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383864366|ref|XP_003707650.1| PREDICTED: cullin-4B-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|194757543|ref|XP_001961024.1| GF11213 [Drosophila ananassae] gi|190622322|gb|EDV37846.1| GF11213 [Drosophila ananassae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query279
FB|FBgn0033260821 Cul-4 "Cullin-4" [Drosophila m 0.505 0.171 0.829 7.3e-84
UNIPROTKB|K4DI93900 CUL4B "Cullin 4B, isoform CRA_ 0.541 0.167 0.746 3.1e-83
UNIPROTKB|Q13620913 CUL4B "Cullin-4B" [Homo sapien 0.541 0.165 0.746 4.1e-83
UNIPROTKB|E2RMN1982 CUL4B "Uncharacterized protein 0.541 0.153 0.746 1.4e-82
UNIPROTKB|E1BFD5965 CUL4B "Uncharacterized protein 0.541 0.156 0.746 2e-81
UNIPROTKB|I3L5M8328 LOC100739075 "Uncharacterized 0.541 0.460 0.746 4e-81
UNIPROTKB|F1RN43761 CUL4A "Uncharacterized protein 0.516 0.189 0.773 1.7e-80
UNIPROTKB|F1Q284761 CUL4A "Uncharacterized protein 0.516 0.189 0.767 3.6e-80
UNIPROTKB|F1N3S4720 CUL4A "Uncharacterized protein 0.516 0.2 0.767 4.6e-80
MGI|MGI:1914487759 Cul4a "cullin 4A" [Mus musculu 0.516 0.189 0.773 9.5e-80
FB|FBgn0033260 Cul-4 "Cullin-4" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 600 (216.3 bits), Expect = 7.3e-84, Sum P(2) = 7.3e-84
 Identities = 117/141 (82%), Positives = 127/141 (90%)

Query:   139 LTDADLRRTLQSLACGKTRVLKKTPASRDIEDCDRFRFNNDFTFKLFRIKINQIQMKETN 198
             + D +LRRTLQSLACG+ RV+ KTP  R+I D D+F FNN+FT KLFRIKINQIQMKETN
Sbjct:   681 IEDGELRRTLQSLACGRARVITKTPKGREILDGDQFDFNNEFTNKLFRIKINQIQMKETN 740

Query:   199 EEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIES 258
             EEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLL++ELFNQL FPVKPADLKKRIES
Sbjct:   741 EEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLITELFNQLTFPVKPADLKKRIES 800

Query:   259 LIDRDYMERDKDKANSYNYMA 279
             LIDRDYMERDKD  N YNY+A
Sbjct:   801 LIDRDYMERDKDNQNQYNYVA 821
GO:0000152 "nuclear ubiquitin ligase complex" evidence=ISS
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS
GO:0031625 "ubiquitin protein ligase binding" evidence=IEA
GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA
GO:0051533 "positive regulation of NFAT protein import into nucleus" evidence=IMP
GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS
GO:0007307 "eggshell chorion gene amplification" evidence=IDA
GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI
UNIPROTKB|K4DI93 CUL4B "Cullin 4B, isoform CRA_e" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q13620 CUL4B "Cullin-4B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RMN1 CUL4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BFD5 CUL4B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3L5M8 LOC100739075 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1RN43 CUL4A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q284 CUL4A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1N3S4 CUL4A "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1914487 Cul4a "cullin 4A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q13620CUL4B_HUMANNo assigned EC number0.78760.51610.1577yesN/A
Q54CS2CUL4_DICDINo assigned EC number0.59130.41210.1433yesN/A
Q8LGH4CUL4_ARATHNo assigned EC number0.70210.50530.1780yesN/A
A2A432CUL4B_MOUSENo assigned EC number0.78230.51970.1494yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query279
COG5647773 COG5647, COG5647, Cullin, a subunit of E3 ubiquiti 7e-27
pfam1055768 pfam10557, Cullin_Nedd8, Cullin protein neddylatio 1e-26
smart0088468 smart00884, Cullin_Nedd8, Cullin protein neddylati 1e-25
smart00182143 smart00182, CULLIN, Cullin 2e-25
pfam00888603 pfam00888, Cullin, Cullin family 2e-22
COG5647773 COG5647, COG5647, Cullin, a subunit of E3 ubiquiti 6e-16
pfam00888603 pfam00888, Cullin, Cullin family 5e-05
>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  109 bits (274), Expect = 7e-27
 Identities = 60/143 (41%), Positives = 82/143 (57%), Gaps = 5/143 (3%)

Query: 139 LTDADLRRTLQSLACGKTRVLKKTPASRDIEDCDRFRFNNDFTFKLFRIKINQIQMKETN 198
           L+  DL+R LQSL+C K  VL K           +F  N +F+ KL RIKIN I   E  
Sbjct: 634 LSTDDLKRVLQSLSCAKLVVLLKDDKLVSPNT--KFYVNENFSSKLERIKINYIAESECM 691

Query: 199 EEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLK--FPVKPADLKKRI 256
           ++   T E V +DRQ ++ A IVRIMK RK L H  L+ E+  Q K  F  K + +K+ I
Sbjct: 692 QDNLDTHETVEEDRQAELQACIVRIMKARKKLKHGDLVKEVIAQHKSRFEPKVSMVKRAI 751

Query: 257 ESLIDRDYMERDKDKANSYNYMA 279
           E+LI+++Y+ER  D    Y Y+A
Sbjct: 752 ETLIEKEYLERQADD-EIYVYLA 773

Length = 773
>gnl|CDD|204512 pfam10557, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information
>gnl|CDD|214883 smart00884, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information
>gnl|CDD|214545 smart00182, CULLIN, Cullin Back     alignment and domain information
>gnl|CDD|216175 pfam00888, Cullin, Cullin family Back     alignment and domain information
>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216175 pfam00888, Cullin, Cullin family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 279
KOG2167|consensus661 100.0
COG5647773 Cullin, a subunit of E3 ubiquitin ligase [Posttran 100.0
KOG2166|consensus725 100.0
KOG2284|consensus728 100.0
KOG2285|consensus777 100.0
PF00888588 Cullin: Cullin family; InterPro: IPR001373 Cullins 99.93
PF1055768 Cullin_Nedd8: Cullin protein neddylation domain; I 99.87
smart00182142 CULLIN Cullin. 99.8
KOG2165|consensus765 98.01
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 93.66
TIGR02698130 CopY_TcrY copper transport repressor, CopY/TcrY fa 90.02
PF03965115 Penicillinase_R: Penicillinase repressor; InterPro 88.76
COG3682123 Predicted transcriptional regulator [Transcription 88.49
PF0197868 TrmB: Sugar-specific transcriptional regulator Trm 87.75
PF1346368 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL 86.81
PF0822057 HTH_DeoR: DeoR-like helix-turn-helix domain; Inter 83.53
smart0055068 Zalpha Z-DNA-binding domain in adenosine deaminase 82.99
>KOG2167|consensus Back     alignment and domain information 
Probab=100.00  E-value=6e-59  Score=439.88  Aligned_cols=258  Identities=63%  Similarity=0.865  Sum_probs=235.8

Q ss_pred             cchhhHHHHhhhcccCCCCCCCCCCCc-c--------cccccCChhHHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHHH
Q psy8359          19 KSKTRAWNRDTCSSLFPPRKQALSTHE-K--------SPIQISIKVNVSSVEKVDLAKRLLVGKSASVDAEKSMLSKLKQ   89 (279)
Q Consensus        19 ~~~~p~~lA~Y~D~ll~~~~~~~~~~~-~--------~~i~l~~KD~Fe~~Y~~~LakRLL~~~s~s~~~E~~~I~~Lk~   89 (279)
                      .++.++++|+|.|.+++.+.++.++.+ .        .|.||..||+||.||++.||+|||.++|+|.|+|..|+++||.
T Consensus       307 ~~rpAelIak~~dt~Lr~gnk~~~d~~l~~~~d~i~~lfr~i~gkdvfeA~ykkdLakrLLl~kSAsvdae~~ml~~lk~  386 (661)
T KOG2167|consen  307 RNRPAELIAKYVDTKLRAGNKETSDEELEFVLDKILVLFRFIHGKDVFEAFYKKDLAKRLLLGKSASVDAEKSMLSKLKL  386 (661)
T ss_pred             cCCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccchhhcchhHHHHHhhh
Confidence            356889999999999999876666654 2        2459999999999999999999999999999999999999999


Q ss_pred             hcCCchhHhHHHHHhhHHHhHHHHHHHHHHHhc-CC---------------CC----------CC---------------
Q psy8359          90 ECGGGFTSKLEGMFKDMELSKDINVAFKQYMGN-LK---------------ED----------KE---------------  128 (279)
Q Consensus        90 ~cG~~~t~kle~M~~D~~~S~~l~~~F~~~~~~-~~---------------~~----------~d---------------  128 (279)
                      +||..||+||++||+|+..|++++..|+.+... ..               +|          ++               
T Consensus       387 ecgs~ft~kLegMfkdme~sk~i~~~f~~~~~~~~~~~~~l~~v~vlt~~yWpty~~~ev~Lp~em~~~~e~F~~fyl~k  466 (661)
T KOG2167|consen  387 ECGSAFTYKLEGMFKDMELSKEINRAFKQSKGANNRLEGNLLTVNVLTMGYWPTYPPMEVLLPKEMRDCQEIFKKFYLGK  466 (661)
T ss_pred             hcchHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhccCcCCceEEEeecccccCCCCchhccCCHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999997322 11               11          00               


Q ss_pred             --------------------cc------------------cccc---------cCCCCCHHHHHHHHhHhhcCCceeeee
Q psy8359         129 --------------------ST------------------SNNA---------LGIDLTDADLRRTLQSLACGKTRVLKK  161 (279)
Q Consensus       129 --------------------~~------------------FN~~---------~~t~i~~~~l~~~L~sL~~~k~~iL~~  161 (279)
                                          |.                  ||+.         ++|+|.+.+|.++|+||+|++.++|.+
T Consensus       467 ~sgrklqW~~~lg~~v~ka~f~~gkkel~~slfq~~vll~fn~~~~~s~~ei~~~t~i~d~el~rtlqsl~cgr~rvl~~  546 (661)
T KOG2167|consen  467 HSGRKLQWQDSLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEGLSYEEIKESTGIEDIELRRTLQSLACGRARVLQK  546 (661)
T ss_pred             ccCcceeeecCCcchhhhhhccCCchHHHHHHHHHhHhhccCCCCcccHHHHHHhccccHHHHHHHHHHHhcccceeeee
Confidence                                00                  7865         899999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEEEecCCCCceeeEEeeccccccchHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCHHHHHHHHHH
Q psy8359         162 TPASRDIEDCDRFRFNNDFTFKLFRIKINQIQMKETNEEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFN  241 (279)
Q Consensus       162 ~~~~~~i~~~~~f~~N~~F~~k~~ki~i~~~~~k~~~~e~~~~~~~i~~~R~~~I~AaIVRIMK~~K~l~~~~L~~eV~~  241 (279)
                      .|.|+.+.+|+.|.+|..|++|..||+|+++..|++.+|+..+.++|.+||.+.||||||||||.||+|+|+.|+.|+.+
T Consensus       547 ~pkg~~~~~~~~f~~n~~f~~kl~rikinqi~~ke~~ee~~~~~e~v~~drqy~idaaivrimk~rk~l~h~~l~~el~~  626 (661)
T KOG2167|consen  547 VPKGKEVEDGDKFIVNDKFTHKLYRIKINQIQMKETVEENKSTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVTELFN  626 (661)
T ss_pred             CCCCCCCCCCCEEEechhhcchhheehHhhhhHHHHHHhhhhhHHHHHhhhhHHHHHHHHHHHHHHHhhchhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCChHHHHHHHHhhhhcCceeecCCCCCceEecC
Q psy8359         242 QLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNYMA  279 (279)
Q Consensus       242 ~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~Yva  279 (279)
                      +++|+..+ ++|+|||+||+|||++|| ++ +.|.|||
T Consensus       627 qlkfpv~~-d~kkriesli~rey~erd-~n-~~y~yva  661 (661)
T KOG2167|consen  627 QLKFPVKP-DLKKRIESLIDREYLERD-DN-NIYNYVA  661 (661)
T ss_pred             hcCCCCCh-hHHHHHHHHHhHHHhccc-cc-ccccccC
Confidence            99999998 999999999999999999 44 9999997

>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2166|consensus Back     alignment and domain information
>KOG2284|consensus Back     alignment and domain information
>KOG2285|consensus Back     alignment and domain information
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3) Back     alignment and domain information
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain Back     alignment and domain information
>smart00182 CULLIN Cullin Back     alignment and domain information
>KOG2165|consensus Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family Back     alignment and domain information
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea Back     alignment and domain information
>COG3682 Predicted transcriptional regulator [Transcription] Back     alignment and domain information
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis Back     alignment and domain information
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A Back     alignment and domain information
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query279
4a0c_C741 Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 2e-62
4a0l_E726 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 2e-62
2hye_C759 Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Compl 1e-61
4a0k_A742 Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp 1e-61
2do7_A101 Solution Structure Of The Winged Helix-Turn-Helix M 1e-40
1iuy_A92 Solution Structure Of The Cullin-3 Homologue Length 2e-15
3rtr_A368 A Ring E3-Substrate Complex Poised For Ubiquitin-Li 5e-14
1ldk_B366 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 6e-14
1u6g_A776 Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le 6e-14
1ldj_A760 Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiqu 7e-14
4f52_A282 Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 4e-12
3dpl_C382 Structural Insights Into Nedd8 Activation Of Cullin 5e-12
3tdu_C77 N-Terminal Acetylation Acts As An Avidity Enhancer 8e-11
3dqv_C382 Structural Insights Into Nedd8 Activation Of Cullin 4e-08
3o2p_E88 A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn 6e-07
3o6b_B76 A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn 7e-07
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 741 Back     alignment and structure 
Iteration: 1

 Score =  235 bits (600), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 115/146 (78%), Positives = 126/146 (86%), Gaps = 2/146 (1%)
Query: 134 ALGIDLTDADLRRTLQSLACGKTRVLKKTPASRDIEDCDRFRFNNDFTFKLFRIKINQIQ 193
           A GI+  D +LRRTLQSLACGK RVL K P  +DIED D+F  N+DF  KLFRIKINQIQ
Sbjct: 598 ATGIE--DGELRRTLQSLACGKARVLAKNPKGKDIEDGDKFICNDDFKHKLFRIKINQIQ 655
Query: 194 MKETNEEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLK 253
           MKET EEQ +T ERVFQDRQYQIDAAIVRIMKMRKTLSHNLL+SE++NQLKFPVKPADLK
Sbjct: 656 MKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLK 715
Query: 254 KRIESLIDRDYMERDKDKANSYNYMA 279
           KRIESLIDRDYMERDK+  N YNY+A
Sbjct: 716 KRIESLIDRDYMERDKENPNQYNYIA 741
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 726 Back     alignment and structure
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex Length = 759 Back     alignment and structure
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 742 Back     alignment and structure
>pdb|2DO7|A Chain A, Solution Structure Of The Winged Helix-Turn-Helix Motif Of Human Cul-4b Length = 101 Back     alignment and structure
>pdb|1IUY|A Chain A, Solution Structure Of The Cullin-3 Homologue Length = 92 Back     alignment and structure
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like Protein Transfer: Structural Insights Into Cullin-Ring Ligases Length = 368 Back     alignment and structure
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 366 Back     alignment and structure
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 776 Back     alignment and structure
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin Ligase Complex Length = 760 Back     alignment and structure
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 282 Back     alignment and structure
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|3TDU|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within An Interconnected Multiprotein Complex: Structure Of A Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex Length = 77 Back     alignment and structure
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|3O2P|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn1(P)-Cdc53(Whb) Length = 88 Back     alignment and structure
>pdb|3O6B|B Chain B, A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn1(P)-Cdc53(Whb) Low Resolution Length = 76 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query279
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 1e-47
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 3e-16
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 1e-46
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 1e-16
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 8e-37
3dpl_C 382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 8e-15
2do7_A101 Cullin-4B, CUL-4B; helix-turn-helix motif, structu 1e-36
1iuy_A92 Cullin-3 homologue; winged helix, structural genom 1e-32
3o2p_E88 Cell division control protein 53; ligase, cell cyc 6e-29
3tdu_C77 Cullin-1, CUL-1; E2:E3, ligase-protein binding com 3e-28
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Length = 759 Back     alignment and structure
 Score =  168 bits (425), Expect = 1e-47
 Identities = 109/141 (77%), Positives = 123/141 (87%)

Query: 139 LTDADLRRTLQSLACGKTRVLKKTPASRDIEDCDRFRFNNDFTFKLFRIKINQIQMKETN 198
           + D++LRRTLQSLACGK RVL K+P  +++ED D+F FN +F  KLFRIKINQIQMKET 
Sbjct: 619 IEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETV 678

Query: 199 EEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIES 258
           EEQ +T ERVFQDRQYQIDAAIVRIMKMRKTL HNLL+SEL+NQLKFPVKP DLKKRIES
Sbjct: 679 EEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRIES 738

Query: 259 LIDRDYMERDKDKANSYNYMA 279
           LIDRDYMERDKD  N Y+Y+A
Sbjct: 739 LIDRDYMERDKDNPNQYHYVA 759
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Length = 759 Back     alignment and structure
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760 Back     alignment and structure
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760 Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Length = 382 Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Length = 382 Back     alignment and structure
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101 Back     alignment and structure
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Length = 92 Back     alignment and structure
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B Length = 88 Back     alignment and structure
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C Length = 77 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query279
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 100.0
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 100.0
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 100.0
2do7_A101 Cullin-4B, CUL-4B; helix-turn-helix motif, structu 99.97
3o2p_E88 Cell division control protein 53; ligase, cell cyc 99.96
3tdu_C77 Cullin-1, CUL-1; E2:E3, ligase-protein binding com 99.96
1iuy_A92 Cullin-3 homologue; winged helix, structural genom 99.96
1wi9_A72 Protein C20ORF116 homolog; helix-turn-helix motif, 91.78
1xn7_A78 Hypothetical protein YHGG; alpha+beta, GFT structu 89.57
2k4b_A99 Transcriptional regulator; DNA binding protein, wi 88.75
1p6r_A82 Penicillinase repressor; transcription regulation, 88.18
2k02_A87 Ferrous iron transport protein C; FEOC, iron-sulfu 86.94
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Back     alignment and structure
Probab=100.00  E-value=6.9e-64  Score=470.82  Aligned_cols=262  Identities=33%  Similarity=0.442  Sum_probs=223.4

Q ss_pred             cCcchhhHHHHhhhcccCCCCC--CCCCCCcc---------cccccCChhHHHHHHHHHHHhHhcCCCCCChHHHHHHHH
Q psy8359          17 LNKSKTRAWNRDTCSSLFPPRK--QALSTHEK---------SPIQISIKVNVSSVEKVDLAKRLLVGKSASVDAEKSMLS   85 (279)
Q Consensus        17 ~~~~~~p~~lA~Y~D~ll~~~~--~~~~~~~~---------~~i~l~~KD~Fe~~Y~~~LakRLL~~~s~s~~~E~~~I~   85 (279)
                      ||++++||+||+|||.++|++.  .+.++.+.         -|.||++||+|+.+|+++||+|||.+++.+.|.|+.||+
T Consensus         1 ~~~~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~   80 (382)
T 3dpl_C            1 GSESKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVE   80 (382)
T ss_dssp             --CCCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            6889999999999999999862  23333221         245999999999999999999999999999999999999


Q ss_pred             HHHHhcCC--chhHhHHHHHhhHHHhHHHHHHHHHHHhcCC-----------------CCC-----Ccc-----------
Q psy8359          86 KLKQECGG--GFTSKLEGMFKDMELSKDINVAFKQYMGNLK-----------------EDK-----EST-----------  130 (279)
Q Consensus        86 ~Lk~~cG~--~~t~kle~M~~D~~~S~~l~~~F~~~~~~~~-----------------~~~-----d~~-----------  130 (279)
                      +|| +||.  +||+||++||+|++.|++++.+|++++.+.+                 ||.     ++.           
T Consensus        81 kLK-~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~  159 (382)
T 3dpl_C           81 WLR-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPE  159 (382)
T ss_dssp             HHH-HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHH
T ss_pred             HHH-HcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEccCCcCCCCCCCCCccCCHHHHHHHHH
Confidence            999 9997  9999999999999999999999999865321                 010     110           


Q ss_pred             ------------------------------------------------cccc-----------cCCCCCHHHHHHHHhHh
Q psy8359         131 ------------------------------------------------SNNA-----------LGIDLTDADLRRTLQSL  151 (279)
Q Consensus       131 ------------------------------------------------FN~~-----------~~t~i~~~~l~~~L~sL  151 (279)
                                                                      ||+.           +.|||+.++|+++|+||
T Consensus       160 F~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL  239 (382)
T 3dpl_C          160 VEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSL  239 (382)
T ss_dssp             HHHHHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCEEEEecCcccEEEEEEeCCceEEEEEcHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHH
Confidence                                                            8862           78999999999999999


Q ss_pred             hcC---CceeeeeCCCC---CCCCCCCeEEEecCCCCc-----eeeEEeeccc--cccchHHHHHHHHHHHhhhhhhhhh
Q psy8359         152 ACG---KTRVLKKTPAS---RDIEDCDRFRFNNDFTFK-----LFRIKINQIQ--MKETNEEQKATEERVFQDRQYQIDA  218 (279)
Q Consensus       152 ~~~---k~~iL~~~~~~---~~i~~~~~f~~N~~F~~k-----~~ki~i~~~~--~k~~~~e~~~~~~~i~~~R~~~I~A  218 (279)
                      ++.   |++||.+.|.+   +++.+++.|+||.+|++.     .+|++|+.+.  +.++..+..++++.+++||.+.|||
T Consensus       240 ~~~~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~A  319 (382)
T 3dpl_C          240 VAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQE  319 (382)
T ss_dssp             HCCTTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccchhcceeeecCCccccCcCCCCCEEEEcCCCcCCcccccceeEEEecccccccccchhhhhhHHHHHHHhhheeeE
Confidence            873   56899998753   678999999999999871     2566666443  2245556677899999999999999


Q ss_pred             hhhhhhccCCCCCHHHHHHHHHHhcC--CCCChHHHHHHHHhhhhcCceeecCCCCCceEecC
Q psy8359         219 AIVRIMKMRKTLSHNLLLSELFNQLK--FPVKPADLKKRIESLIDRDYMERDKDKANSYNYMA  279 (279)
Q Consensus       219 aIVRIMK~~K~l~~~~L~~eV~~~l~--F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~Yva  279 (279)
                      |||||||+||+|+|++|+.||+++++  |.|++.+||+|||+||+||||+|+++|+++|+|+|
T Consensus       320 aIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA  382 (382)
T 3dpl_C          320 AIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA  382 (382)
T ss_dssp             HHHHHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred             EEehhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeEEEcC
Confidence            99999999999999999999999998  99999999999999999999999999999999998
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Back     alignment and structure
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Back     alignment and structure
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B Back     alignment and structure
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C Back     alignment and structure
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Back     alignment and structure
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 Back     alignment and structure
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp} Back     alignment and structure
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B Back     alignment and structure
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 279
d2hyec184 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapien 9e-37
d1iuya_92 a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus muscu 1e-32
d1ldja190 a.4.5.34 (A:687-776) Anaphase promoting complex (A 1e-31
d1ldja3276 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Huma 6e-17
d1ldja3276 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Huma 2e-09
d2hyec3273 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapien 3e-16
d2hyec3273 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapien 7e-16
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: SCF ubiquitin ligase complex WHB domain
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (311), Expect = 9e-37
 Identities = 71/84 (84%), Positives = 76/84 (90%)

Query: 196 ETNEEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKR 255
           ET EEQ +T ERVFQDRQYQIDAAIVRIMKMRKTL HNLL+SEL+NQLKFPVKP DLKKR
Sbjct: 1   ETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKR 60

Query: 256 IESLIDRDYMERDKDKANSYNYMA 279
           IESLIDRDYMERDKD  N Y+Y+A
Sbjct: 61  IESLIDRDYMERDKDNPNQYHYVA 84
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Length = 92 Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 276 Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 276 Back     information, alignment and structure
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Back     information, alignment and structure
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query279
d2hyec3273 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ldja3276 Cullin homolog 1, cul-1 {Human (Homo sapiens) [Tax 99.98
d2hyec184 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 99.96
d1ldja190 Anaphase promoting complex (APC) {Human (Homo sapi 99.96
d1iuya_92 Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 1 99.94
d1wi9a_72 Hypothetical protein C20orf116 homolog {Mouse (Mus 90.13
d2g9wa1122 Hypothetical protein Rv1846c {Mycobacterium tuberc 89.18
d1p6ra_82 Penicillinase repressor BlaI {Bacillus licheniform 87.89
d1okra_120 Methicillin resistance regulatory protein MecI {St 86.38
d2cg4a163 Regulatory protein AsnC {Escherichia coli [TaxId: 82.81
d1sd4a_122 Penicillinase repressor BlaI {Staphylococcus aureu 82.18
d1i1ga160 LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} 82.18
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Cullin homology domain
superfamily: Cullin homology domain
family: Cullin homology domain
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-34  Score=254.81  Aligned_cols=175  Identities=55%  Similarity=0.726  Sum_probs=151.6

Q ss_pred             chhhHHHHhhhcccCCCCCCCCCCCcc-----c----ccccCChhHHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHHHh
Q psy8359          20 SKTRAWNRDTCSSLFPPRKQALSTHEK-----S----PIQISIKVNVSSVEKVDLAKRLLVGKSASVDAEKSMLSKLKQE   90 (279)
Q Consensus        20 ~~~p~~lA~Y~D~ll~~~~~~~~~~~~-----~----~i~l~~KD~Fe~~Y~~~LakRLL~~~s~s~~~E~~~I~~Lk~~   90 (279)
                      ++.|++||+|||.++|++....++.+.     .    |.||++||+|+.+|+++||+|||.+.+.+.+.|+.||++|+.+
T Consensus         1 ~~~~e~la~y~D~~lr~~~k~~~~~~~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~~~~~~~E~~~i~~L~~~   80 (273)
T d2hyec3           1 NKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHE   80 (273)
T ss_dssp             SHHHHHHHHHHHHHHSSCGGGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            467999999999999987543333221     1    3599999999999999999999999999999999999999999


Q ss_pred             cCCchhHhHHHHHhhHHHhHHHHHHHHHHHhcCC----------------CCC----Ccc--------------------
Q psy8359          91 CGGGFTSKLEGMFKDMELSKDINVAFKQYMGNLK----------------EDK----EST--------------------  130 (279)
Q Consensus        91 cG~~~t~kle~M~~D~~~S~~l~~~F~~~~~~~~----------------~~~----d~~--------------------  130 (279)
                      ||.+||.+|+.|++|++.|.+++.+|++++....                +|.    ++.                    
T Consensus        81 ~g~~~~~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~~v~vLs~~~WP~~~~~~~~lP~~l~~~~~~F~~~Y~~~~  160 (273)
T d2hyec3          81 CGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKH  160 (273)
T ss_dssp             TCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTTS
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCceEEEEeeCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999865432                120    000                    


Q ss_pred             ---------------------------------------cccc---------cCCCCCHHHHHHHHhHhhcCCceeeeeC
Q psy8359         131 ---------------------------------------SNNA---------LGIDLTDADLRRTLQSLACGKTRVLKKT  162 (279)
Q Consensus       131 ---------------------------------------FN~~---------~~t~i~~~~l~~~L~sL~~~k~~iL~~~  162 (279)
                                                             ||+.         +.||++.++|.++|.+|+..|.+||.+.
T Consensus       161 ~~RkL~w~~~ls~~~l~~~~~~~~~~l~~s~~Qa~ILl~fn~~~~~t~~~i~~~~~i~~~~l~~~L~~L~~~k~~iL~~~  240 (273)
T d2hyec3         161 SGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKS  240 (273)
T ss_dssp             CSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEET
T ss_pred             CCCEEEEecCCccEEEEEEECCCcEEEEEcHHHHHHHHHhcCCCCCcHHHHHHHHCcCHHHHHHHHHHHHhcccceeeec
Confidence                                                   7765         7899999999999999999899999999


Q ss_pred             CCCCCCCCCCeEEEecCCCCceeeEEeecccc
Q psy8359         163 PASRDIEDCDRFRFNNDFTFKLFRIKINQIQM  194 (279)
Q Consensus       163 ~~~~~i~~~~~f~~N~~F~~k~~ki~i~~~~~  194 (279)
                      +++.++.+++.|.+|.+|+++++||+|++++.
T Consensus       241 ~~~~~~~~~~~~~~N~~F~~k~~kiki~~~~~  272 (273)
T d2hyec3         241 PKGKEVEDGDKFIFNGEFKHKLFRIKINQIQM  272 (273)
T ss_dssp             TCSSSCCSSCEEEECCCCCCSCSSEECGGGGG
T ss_pred             CCCCcCCCCCEEEEeccCCCCCeEEeeccccc
Confidence            99999999999999999999999999997754
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]} Back     information, alignment and structure
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure