Psyllid ID: psy8366
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 513 | 2.2.26 [Sep-21-2011] | |||||||
| B0WC46 | 517 | Facilitated trehalose tra | N/A | N/A | 0.766 | 0.760 | 0.280 | 2e-55 | |
| Q17NV8 | 806 | Facilitated trehalose tra | N/A | N/A | 0.762 | 0.485 | 0.286 | 3e-54 | |
| A9ZSY3 | 505 | Facilitated trehalose tra | N/A | N/A | 0.795 | 0.807 | 0.283 | 6e-51 | |
| A5LGM7 | 504 | Facilitated trehalose tra | N/A | N/A | 0.760 | 0.773 | 0.280 | 6e-51 | |
| B4LPX5 | 911 | Facilitated trehalose tra | N/A | N/A | 0.768 | 0.432 | 0.272 | 1e-50 | |
| Q7PIR5 | 793 | Facilitated trehalose tra | no | N/A | 0.766 | 0.495 | 0.270 | 2e-50 | |
| B4KR05 | 863 | Facilitated trehalose tra | N/A | N/A | 0.768 | 0.456 | 0.267 | 2e-49 | |
| Q291H8 | 868 | Facilitated trehalose tra | no | N/A | 0.756 | 0.447 | 0.274 | 3e-49 | |
| B4GAP7 | 869 | Facilitated trehalose tra | N/A | N/A | 0.756 | 0.446 | 0.274 | 3e-49 | |
| B4HNS1 | 488 | Facilitated trehalose tra | N/A | N/A | 0.762 | 0.801 | 0.272 | 4e-48 |
| >sp|B0WC46|TRET1_CULQU Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/417 (28%), Positives = 223/417 (53%), Gaps = 24/417 (5%)
Query: 79 LSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSII 138
++D+ SW+G I+ L G I+ G +EY+GRK ++ PF + W+L+ A V+++
Sbjct: 94 VTDQSGSWVGGIMPLAGLVGGILGGPLIEYLGRKNTILATATPFIISWLLIACATHVAMV 153
Query: 139 MLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTDWRT 198
++G G SVG + Y+GE +P +RG+L L A N G+ + F+ DW
Sbjct: 154 LVGRALSGFSVGVASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGNYMDWSE 213
Query: 199 TVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVK 258
+ A P+ +I++ IPE+P W VS+GR + A ++L+W+RG KK V E + ++K
Sbjct: 214 LAFLGATLPVPFLILMFLIPETPRWYVSRGRDDRARKALQWLRG--KKADVDPELKGIIK 271
Query: 259 DTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRP 318
A +R +SQ S +L+ L + + +P ++ + L F ++ + +
Sbjct: 272 SHQDA------------ERHASQ-SAMLDLLKKTNL-KPLLISLGLMFFQQLSGINAVIF 317
Query: 319 FLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLM- 377
+ V+IF+ G + ++ G+++ +F++T+ +++LG++ M L+ + I TLM
Sbjct: 318 YTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATLLIDRLGRK-MLLYISDIAMIITLMT 376
Query: 378 ------LSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGIT 431
+ ++ GW+PL F G P+PW+++ E+ P ++RG A+ +
Sbjct: 377 LGGFFYVKNNGGDVSHIGWLPLASFVIFVLGFSLGFGPIPWLMMGEILPGKIRGSAASVA 436
Query: 432 AASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEI 488
A + F+ TKT+ ++ + G HG +++ V +G +++ YVPET+ ++L++I
Sbjct: 437 TAFNWSCTFVVTKTFADIIASIGTHGAFWMFGSVCVVGLVFVIMYVPETQGKSLEDI 493
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High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Culex quinquefasciatus (taxid: 7176) |
| >sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (541), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 120/419 (28%), Positives = 229/419 (54%), Gaps = 28/419 (6%)
Query: 79 LSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSII 138
++D+ SW+G I+ L G I+ G +EY+GRK ++ PF + W+L+ A V+++
Sbjct: 383 VTDQSGSWVGGIMPLAGLAGGILGGPLIEYLGRKNTILATATPFIISWLLIACATHVAMV 442
Query: 139 MLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTDWRT 198
++G G SVG + Y+GE +P +RG+L L A N G+ + F+ DW
Sbjct: 443 LVGRALSGFSVGVASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGKYMDWSG 502
Query: 199 TVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVK 258
+ A PI ++++ IPE+P W VS+GR + A ++L+W+RG KK V E + ++K
Sbjct: 503 LAFLGAALPIPFLLLMFLIPETPRWYVSRGRDDRARKALQWLRG--KKADVDPELKGIIK 560
Query: 259 DTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRP 318
A +R +SQ S +L+ L++ ++P ++ + L F ++ + +
Sbjct: 561 SHQDA------------ERHASQ-SAMLD-LMKKANLKPLLISLGLMFFQQLSGINAVIF 606
Query: 319 FLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLM- 377
+ V+IF+ G + ++ G+++ +F++T+ +++LG++ M L+ + + TLM
Sbjct: 607 YTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATMLIDRLGRK-MLLYISDVAMIITLMT 665
Query: 378 ------LSICAMNLQWPGWIPLTIFCTCFWVSGY--GMLPLPWMLLSEVFPLQVRGIASG 429
+ ++ GW+PL F +V G+ G P+PW+++ E+ P ++RG A+
Sbjct: 666 LGGFFYVKNSGQDVSQVGWLPLAAF--VIYVLGFSLGFGPIPWLMMGEILPGKIRGSAAS 723
Query: 430 ITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEI 488
+ A + FI TKT+ ++ + G HGT +++ + +G ++ FYVPET+ ++L++I
Sbjct: 724 VATAFNWSCTFIVTKTFADIINAIGTHGTFWMFGSICVIGLAFVIFYVPETQGKSLEDI 782
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High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Aedes aegypti (taxid: 7159) |
| >sp|A9ZSY3|TRET1_BOMMO Facilitated trehalose transporter Tret1 OS=Bombyx mori GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 202 bits (514), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 126/445 (28%), Positives = 229/445 (51%), Gaps = 37/445 (8%)
Query: 77 LILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVS 136
L ++ E+ +W+G ++ L G I+ G +EY+GRK+ ++ PF +GW+L+ A V
Sbjct: 83 LDITKEEITWVGGLMPLAALVGGIVGGPLIEYLGRKKTIMGTAVPFTIGWMLIANAINVV 142
Query: 137 IIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTDW 196
++ G V G+ VG YIGE +P +RG+L L A N G+ + FL+ + DW
Sbjct: 143 MVFAGRVICGVCVGIVSLAFPVYIGETIQPEVRGALGLLPTAFGNTGILLAFLVGSYLDW 202
Query: 197 RTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQL 256
A P+ +++ PE+P W VSK R++EA +SLRW+RG V +E
Sbjct: 203 SNLAFFGAAIPVPFFLLMILTPETPRWYVSKARVQEARKSLRWLRG----KNVNIE---- 254
Query: 257 VKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMI-LFFITIIASLQP 315
K+ T+ +S+ T SK YL P +MI + L + +
Sbjct: 255 -KEMRDLTISQTESDRTGGNAFKQLFSK--RYL-------PAVMISLGLMLFQQLTGINA 304
Query: 316 MRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFT 375
+ + IF+ G + ++ G+++ +F++T+ +++LG++ + L+ + + T
Sbjct: 305 VIFYAASIFQMSGSSVDENLASIIIGVVNFISTFIATMLIDRLGRK-VLLYISSVAMITT 363
Query: 376 LM-------LSICAMNLQWPGWIPLTIFCTCFWVSGY--GMLPLPWMLLSEVFPLQVRGI 426
L+ L +++ GW+PL C +V G+ G P+PW++L E+ P ++RG
Sbjct: 364 LLALGAYFYLKQNHIDVTAYGWLPLA--CLVIYVLGFSIGFGPIPWLMLGEILPSKIRGT 421
Query: 427 ASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQ 486
A+ + + FI TKT+ N+ +HGTL+++ ++ G +++ F+VPET+ ++L+
Sbjct: 422 AASLATGFNWTCTFIVTKTFQNIIDAIYMHGTLWLFAVICIGGLLFVIFFVPETKGKSLE 481
Query: 487 EI-LDFFAENKSARDFKRPSKSKQP 510
EI + + ++ R+ SKQP
Sbjct: 482 EIEMKLTSGSRRVRNI-----SKQP 501
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High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Bombyx mori (taxid: 7091) |
| >sp|A5LGM7|TRET1_POLVA Facilitated trehalose transporter Tret1 OS=Polypedilum vanderplanki GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 202 bits (513), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 118/420 (28%), Positives = 222/420 (52%), Gaps = 30/420 (7%)
Query: 79 LSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSII 138
++++++SW+G I+ L G I G F+EY+GRK ++ PF + W+L+ A ++ ++
Sbjct: 81 VTEQEASWVGGIMPLAGLAGGIAGGPFIEYLGRKNTILATAVPFIVAWLLIAFANSIWMV 140
Query: 139 MLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTDWRT 198
+ G G VG + Y+GE +P +RG+L L A N G+ I F+ +W
Sbjct: 141 LAGRALSGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILICFVAGKYVNWSG 200
Query: 199 TVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVK 258
I +I PI M++ IPE+P W V++GR E A ++L+W+RG KK V E + +VK
Sbjct: 201 LAFIGSILPIPFMVLTLLIPETPRWFVTRGREERARKALQWLRG--KKADVEPELKGIVK 258
Query: 259 DTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRP 318
A +R +SQ + + + + R + +P ++ + L F ++ + +
Sbjct: 259 SHCEA------------ERHASQ-NAIFDLMKRSNL-KPLLIALGLMFFQQLSGINAVIF 304
Query: 319 FLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKR--------GMTLWSTGI 370
+ V IF+ G + ++ G+++ +F +T+ +++LG++ M + +
Sbjct: 305 YTVSIFKDAGSTIDENLCTIIVGVVNFGATFFATVLIDRLGRKILLYISEVAMVITLLTL 364
Query: 371 NTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGY--GMLPLPWMLLSEVFPLQVRGIAS 428
TFF S ++ GW+PL F +V G+ G+ P+PW++L E+ P ++RG A+
Sbjct: 365 GTFFYYKNS--GNDVSNIGWLPLASF--VIYVIGFSSGVGPIPWLMLGEILPGKIRGSAA 420
Query: 429 GITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEI 488
+ + FI TKT+ ++ + G HG + + ++ +G ++ F+VPET+ ++L+EI
Sbjct: 421 SVATGFNWTCTFIVTKTFADIVAAIGNHGAFWFFGVICLIGLFFVIFFVPETQGKSLEEI 480
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High-capacity facilitative transporter for trehalose, required to induce anhydrobiosis. Anhydrobiotic larvae can survive almost complete dehydration. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Polypedilum vanderplanki (taxid: 319348) |
| >sp|B4LPX5|TRET1_DROVI Facilitated trehalose transporter Tret1 OS=Drosophila virilis GN=Tret1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/418 (27%), Positives = 217/418 (51%), Gaps = 24/418 (5%)
Query: 78 ILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSI 137
+++ + +SW+G I+ L G I G F+EY+GR+ ++ PF + W+L+ A V +
Sbjct: 487 VVTPQAASWVGGIMPLAGLAGGIAGGPFIEYLGRRNTILATAVPFIVSWLLIACAVNVIM 546
Query: 138 IMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTDWR 197
++ G G VG + Y+GE +P +RG+L L A N G+ + F+ DW
Sbjct: 547 VLCGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWS 606
Query: 198 TTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLV 257
+ A P+ +I++ IPE+P W VS+GR E A ++L W+RG K+ V E + L+
Sbjct: 607 MLAFLGASLPVPFLILMFLIPETPRWYVSRGREERARKALVWLRG--KEADVEPELKGLM 664
Query: 258 KDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMR 317
+ AD++ Q K +L K N ++P + + L F ++ + +
Sbjct: 665 RSQ-------ADADRQATQNKMLELLKRSN-------LKPLSISLGLMFFQQLSGINAVI 710
Query: 318 PFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLM 377
+ V+IF+ G + ++ G+++ +F++TI +++ G++ + L+ + + TL
Sbjct: 711 FYTVQIFQDAGSTIDGNVCTIIVGVVNFAATFIATILIDRAGRK-VLLYVSNVMMVLTLF 769
Query: 378 L-------SICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGI 430
+ M+ GW+PL+ F G P+PW+++ E+ P ++RG A+ +
Sbjct: 770 VLGGFFYCKSSGMDTSNVGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASV 829
Query: 431 TAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEI 488
A + F+ TK++ ++ + G HG +++ + F+G ++ FYVPET+ +TL++I
Sbjct: 830 ATAFNWSCTFVVTKSFQDMIDFMGAHGAFWMFGAICFIGLFFVIFYVPETQGKTLEDI 887
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Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila virilis (taxid: 7244) |
| >sp|Q7PIR5|TRET1_ANOGA Facilitated trehalose transporter Tret1 OS=Anopheles gambiae GN=Tret1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/417 (27%), Positives = 220/417 (52%), Gaps = 24/417 (5%)
Query: 79 LSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSII 138
++D+ SW+G I+ L G I+ G +EY+GRK ++ PF + W+L+ A V+++
Sbjct: 370 VTDQSGSWVGGIMPLAGLAGGILGGPMIEYLGRKNTILATATPFIISWLLIGCATHVAMV 429
Query: 139 MLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTDWRT 198
++G GL VG + Y+GE +P +RG+L L A N G+ + F+ DW
Sbjct: 430 LVGRALSGLCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGKYLDWSG 489
Query: 199 TVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVK 258
+ A PI ++++ IPE+P W VS+ R + A ++L+W+RG +K V E + + K
Sbjct: 490 LAFLGAALPIPFLLLMFLIPETPRWYVSRNREDRARKALQWLRG--RKADVEPELKGISK 547
Query: 259 DTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRP 318
A + + SS + LLN ++P ++ + L F ++ + +
Sbjct: 548 SHQDAERHAS----------SSAMLDLLNKAN----LKPLLISLGLMFFQQLSGINAVIF 593
Query: 319 FLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLM- 377
+ V+IF++ G + + ++ G+++ +F++T+ +++LG R + L+ + + TLM
Sbjct: 594 YTVQIFQSAGSTIDEKLCTIIVGVVNFIATFIATVLIDRLG-RKILLYISDVAMIITLMT 652
Query: 378 ------LSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGIT 431
+ ++ GW+PL F G P+PW+++ E+ P ++RG A+ +
Sbjct: 653 LGTFFYMKNNGDDVSEIGWLPLAAFVVFVVGFSLGFGPIPWLMMGEILPGKIRGSAASVA 712
Query: 432 AASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEI 488
A + F+ TKT+ ++T+ G HG +++ + +G +++ YVPET+ ++L++I
Sbjct: 713 TAFNWSCTFVVTKTFADITASIGNHGAFWMFGSICIVGLLFVIVYVPETQGKSLEDI 769
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Anopheles gambiae (taxid: 7165) |
| >sp|B4KR05|TRET1_DROMO Facilitated trehalose transporter Tret1 OS=Drosophila mojavensis GN=Tret1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 197 bits (500), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/418 (26%), Positives = 219/418 (52%), Gaps = 24/418 (5%)
Query: 78 ILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSI 137
+++ + +SW+G I+ L G I G F+EY+GR+ ++ PF + W+L+ A V +
Sbjct: 439 VVTPQAASWVGGIMPLAGLAGGIAGGPFIEYLGRRNTILATAVPFIISWLLIACAVNVVM 498
Query: 138 IMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTDWR 197
++ G G VG + Y+GE +P +RG+L L A N G+ + F+ DW
Sbjct: 499 VLCGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWS 558
Query: 198 TTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLV 257
+ P+ +I++ IPE+P W VS+GR E A ++L W+RG K+ V E + L+
Sbjct: 559 MLAFLGGTLPVPFLILMFLIPETPRWYVSRGREERARKALVWLRG--KEADVEPELKGLM 616
Query: 258 KDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMR 317
+ AD++ R+++Q + +L L R + +P + + L F ++ + +
Sbjct: 617 RSQ-------ADAD-----RQATQ-NTMLELLKRSNL-KPLSISLGLMFFQQLSGINAVI 662
Query: 318 PFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLM 377
+ V+IF+ G + ++ G+++ +F++T+ +++ G++ + L+ + + TL
Sbjct: 663 FYTVQIFQDAGSTIDGNVCTIIVGVVNFMATFIATVLIDRAGRK-ILLYVSNVAMILTLF 721
Query: 378 L-------SICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGI 430
+ M+ GW+PL+ F G P+PW+++ E+ P ++RG A+ +
Sbjct: 722 VLGGFFYCKSTGMDTSNVGWLPLSCFVVYILGFSLGFGPIPWLMMGEILPAKIRGSAASV 781
Query: 431 TAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEI 488
A + F+ TK++ ++ G HG +++ + F+G ++ FYVPET+ +TL++I
Sbjct: 782 ATAFNWSCTFVVTKSFQDMIDVMGAHGAFWMFGAICFVGLFFVIFYVPETQGKTLEDI 839
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila mojavensis (taxid: 7230) |
| >sp|Q291H8|TRET1_DROPS Facilitated trehalose transporter Tret1 OS=Drosophila pseudoobscura pseudoobscura GN=Tret1 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 196 bits (499), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/416 (27%), Positives = 217/416 (52%), Gaps = 28/416 (6%)
Query: 82 EQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLG 141
+ +SW+G I+ L G I G F+EY+GR+ ++ PF + +L+ A V++++ G
Sbjct: 448 QAASWVGGIMPLAGLAGGIAGGPFIEYLGRRNTILATAIPFIVSSLLIACAVNVAMVLAG 507
Query: 142 TVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTDWRTTVL 201
G VG + Y+GE +P +RG+L L A N G+ + F+ DW
Sbjct: 508 RFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAF 567
Query: 202 ISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTN 261
+ A P+ +I++ IPE+P W VS+GR E+A ++L W+RG K+ V E + L++
Sbjct: 568 LGAALPVPFLILMFLIPETPRWFVSRGREEKARKALSWLRG--KEADVEPELKGLMRSQ- 624
Query: 262 SATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLV 321
AD++ Q K +L K N ++P + + L F ++ + + + V
Sbjct: 625 ------ADADRQATQNKMMELLKRNN-------LKPLSISLGLMFFQQLSGINAVIFYTV 671
Query: 322 EIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLML--- 378
IF+ G + ++ GI++ +F++T+ +++ G++ + L+ + I TL +
Sbjct: 672 SIFKDAGSTIDGNLCTIIVGIVNFMATFIATLLIDRAGRK-ILLYVSNIAMIITLFVLGG 730
Query: 379 ----SICAMNLQWPGWIPLTIFCTCFWVSGY--GMLPLPWMLLSEVFPLQVRGIASGITA 432
++ GW+PL+ C ++ G+ G P+PW+++ E+ P ++RG A+ +
Sbjct: 731 FFYCKSHGQDVSQLGWLPLS--CFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVAT 788
Query: 433 ASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEI 488
A + F+ TKT+ ++ + G HG +++ + F+G ++ YVPET+ +TL++I
Sbjct: 789 AFNWSCTFVVTKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDI 844
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila pseudoobscura pseudoobscura (taxid: 46245) |
| >sp|B4GAP7|TRET1_DROPE Facilitated trehalose transporter Tret1 OS=Drosophila persimilis GN=Tret1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 196 bits (499), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/416 (27%), Positives = 217/416 (52%), Gaps = 28/416 (6%)
Query: 82 EQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLG 141
+ +SW+G I+ L G I G F+EY+GR+ ++ PF + +L+ A V++++ G
Sbjct: 449 QAASWVGGIMPLAGLAGGIAGGPFIEYLGRRNTILATAIPFIVSSLLIACAVNVAMVLAG 508
Query: 142 TVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTDWRTTVL 201
G VG + Y+GE +P +RG+L L A N G+ + F+ DW
Sbjct: 509 RFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAF 568
Query: 202 ISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTN 261
+ A P+ +I++ IPE+P W VS+GR E+A ++L W+RG K+ V E + L++
Sbjct: 569 LGAALPVPFLILMFLIPETPRWFVSRGREEKARKALSWLRG--KEADVEPELKGLMRSQ- 625
Query: 262 SATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLV 321
AD++ Q K +L K N ++P + + L F ++ + + + V
Sbjct: 626 ------ADADRQATQNKMMELLKRNN-------LKPLSISLGLMFFQQLSGINAVIFYTV 672
Query: 322 EIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLML--- 378
IF+ G + ++ GI++ +F++T+ +++ G++ + L+ + I TL +
Sbjct: 673 SIFKDAGSTIDGNLCTIIVGIVNFMATFIATLLIDRAGRK-ILLYVSNIAMIITLFVLGG 731
Query: 379 ----SICAMNLQWPGWIPLTIFCTCFWVSGY--GMLPLPWMLLSEVFPLQVRGIASGITA 432
++ GW+PL+ C ++ G+ G P+PW+++ E+ P ++RG A+ +
Sbjct: 732 FFYCKSHGQDVSQLGWLPLS--CFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVAT 789
Query: 433 ASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEI 488
A + F+ TKT+ ++ + G HG +++ + F+G ++ YVPET+ +TL++I
Sbjct: 790 AFNWSCTFVVTKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDI 845
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila persimilis (taxid: 7234) |
| >sp|B4HNS1|TRE12_DROSE Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila sechellia GN=Tret1-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (489), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 114/419 (27%), Positives = 217/419 (51%), Gaps = 28/419 (6%)
Query: 79 LSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSII 138
++ + SW+G I+ L G I G +EY+GR+ ++ PF + +L+ A V +I
Sbjct: 66 VTKDAGSWVGGIMPLAALAGGITGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVIMI 125
Query: 139 MLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTDWRT 198
+ G G VG + Y+GE +P +RG+L L A N G+ + ++ + +W
Sbjct: 126 LCGRFLTGFCVGIASLSLPVYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSI 185
Query: 199 TVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVK 258
+ A P+ +I++ IPE+P W V++G+ E A ++L+W+RG K+ V E + L++
Sbjct: 186 LAFLGAALPVPFLILMIIIPETPRWFVNRGQEERARKALKWLRG--KEADVEPELKDLMQ 243
Query: 259 DTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRP 318
ADS+ T + +L K +N ++P + + L F + + +
Sbjct: 244 SQAE-----ADSQAT--RNTCLELFKRIN-------LKPLSISLGLMFFQQFSGINAVIF 289
Query: 319 FLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLML 378
+ V+IF+ G + S ++ GI++ +F+ I +++LG++ + L+ + I TL +
Sbjct: 290 YTVQIFKDAGSTIDSNLCTIIVGIVNFFATFMGIILIDRLGRK-ILLYVSDIAMILTLSI 348
Query: 379 -------SICAMNLQWPGWIPLTIFCTCFWVSGY--GMLPLPWMLLSEVFPLQVRGIASG 429
++ GW+PL+ C ++ G+ G P+PW+++ E+ P ++RG A+
Sbjct: 349 LGGFFYCKAHGPDVSHLGWLPLS--CFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAAS 406
Query: 430 ITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEI 488
+ A + F+ TKT+ +LT G HG +++ +V +G ++ YVPET ++L+EI
Sbjct: 407 VVTAFNWFCTFVVTKTFQDLTVAMGPHGAFWLFGVVCIVGLFFVIIYVPETRGKSLEEI 465
|
Fails to transport trehalose. Drosophila sechellia (taxid: 7238) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 513 | ||||||
| 291461573 | 507 | sugar transporter 7 [Nilaparvata lugens] | 0.941 | 0.952 | 0.377 | 4e-98 | |
| 347965559 | 577 | AGAP001236-PA [Anopheles gambiae str. PE | 0.931 | 0.828 | 0.376 | 4e-97 | |
| 170043906 | 566 | sugar transporter [Culex quinquefasciatu | 0.902 | 0.818 | 0.380 | 2e-95 | |
| 157125518 | 570 | sugar transporter [Aedes aegypti] gi|108 | 0.925 | 0.833 | 0.376 | 3e-95 | |
| 193697617 | 475 | PREDICTED: facilitated trehalose transpo | 0.904 | 0.976 | 0.362 | 2e-84 | |
| 328719965 | 483 | PREDICTED: facilitated trehalose transpo | 0.923 | 0.981 | 0.343 | 1e-81 | |
| 193669080 | 515 | PREDICTED: facilitated trehalose transpo | 0.898 | 0.895 | 0.356 | 4e-81 | |
| 328713668 | 502 | PREDICTED: facilitated trehalose transpo | 0.910 | 0.930 | 0.349 | 9e-81 | |
| 328719967 | 476 | PREDICTED: facilitated trehalose transpo | 0.910 | 0.981 | 0.341 | 5e-79 | |
| 193664559 | 530 | PREDICTED: facilitated trehalose transpo | 0.925 | 0.896 | 0.343 | 2e-77 |
| >gi|291461573|dbj|BAI83421.1| sugar transporter 7 [Nilaparvata lugens] | Back alignment and taxonomy information |
|---|
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 196/519 (37%), Positives = 297/519 (57%), Gaps = 36/519 (6%)
Query: 7 SSQKEILSEAEKEKVNVR-YGFRSACSQFTASVAQNFLLFSLGMAFGMPTVVVGVL---D 62
++ I E K NV Y RS +Q A++ LL ++G+ F MPT+V+G L D
Sbjct: 2 ATSLNIDQETSTNKANVEAYRLRSNIAQIVATLGFCILLAAVGLIFCMPTIVIGGLLGVD 61
Query: 63 HKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPF 122
++++ L++ +SW GS++F+ P GS +SG+ + GRK+ M+ P
Sbjct: 62 NEIS------------LNENYASWFGSMVFMTQPIGSCVSGFLQDRFGRKKCMMASTIPQ 109
Query: 123 FLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNF 182
+GWI+LY + +V+ + + MG+S+G EAP++SYIGE++EPRMRG +S+ G+
Sbjct: 110 MIGWIVLYYSTSVAQLYAASTLMGMSIGFIEAPVLSYIGEVTEPRMRGPMSVLGGSFAGI 169
Query: 183 GVFIIFLIYALTDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRG 242
G+ I A+TDWR+ ISA FP++ I ++FIPESP WL+ GR+ EAE++L W+RG
Sbjct: 170 GILIECFFGAMTDWRSACAISATFPVMAFIALSFIPESPVWLICVGRIAEAEQALCWLRG 229
Query: 243 WSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRK------------SSQLSKLLNYLV 290
W VR EF + NS + ++ + D S+ + L
Sbjct: 230 WVHPACVRQEFLSTLTYLNSPCAH-ELTDISNDNMAMKDFKKKEKIKLSNGVMDNLLMFT 288
Query: 291 RPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFV 350
RP I RPF ++ I FF++ SL MRPFLV+IF G+PM S WVLV++ L + GS
Sbjct: 289 RPTIYRPFTLVFIYFFVSHAVSLLGMRPFLVKIFEDMGMPMSSHWVLVISSGLQVVGSVT 348
Query: 351 STITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPL 410
+T++ GKR +T S ++ ++L I M WI +F F+ +G+G+ P+
Sbjct: 349 CMLTMHLFGKRHITFLSLSVSVVSCILLGILLMMQAEHPWIAFFLFTLIFFATGFGVCPV 408
Query: 411 PWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGF 470
PW+LLSE++P++ RG+A G +AA + FI TK+YINL F ++GT FIY+ +GF
Sbjct: 409 PWVLLSEIYPVEGRGLAGGASAACYYFLGFIVTKSYINLVHLFDVYGTCFIYSAFGLIGF 468
Query: 471 IYIYFYVPETEDRTLQEILDFFAENKSARDFKRPSKSKQ 509
+Y+Y +PETE +TLQEI DFF + K P K Q
Sbjct: 469 VYLYMKLPETEGKTLQEIEDFFKD-------KSPKKKHQ 500
|
Source: Nilaparvata lugens Species: Nilaparvata lugens Genus: Nilaparvata Family: Delphacidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|347965559|ref|XP_321919.5| AGAP001236-PA [Anopheles gambiae str. PEST] gi|333470456|gb|EAA01784.5| AGAP001236-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 361 bits (927), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 191/507 (37%), Positives = 298/507 (58%), Gaps = 29/507 (5%)
Query: 26 GFRSACSQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPD--LILSDEQ 83
FR Q AS A+NFLL LGMA PT+V+ L + N+ +PD L + +Q
Sbjct: 47 AFRRILPQILASTAKNFLLLDLGMAVAFPTIVIPAL--RGIKNR----APDEFLHFTPQQ 100
Query: 84 SSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTV 143
+SW GSI ++ P GS++SG LE +GRKR MILV P +GW +L+ A ++ + +
Sbjct: 101 ASWFGSIAYICQPVGSVLSGIILEPLGRKRSMILVNIPHIIGWFMLHFAGSLEEMYTAAI 160
Query: 144 CMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTDWRTTVLIS 203
+GL VG EAPI++Y+GEI +P +RG L+ AG A G F+++L+ +T WRTT I
Sbjct: 161 LLGLGVGFMEAPIVTYVGEICQPSIRGILTSCAGVAVMLGFFMVYLLGTVTTWRTTAAIC 220
Query: 204 AIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVK-DTNS 262
+ PI TMI I F+PE+P WL+SK R ++A +SL+W+RGW V EF+++ + +S
Sbjct: 221 GVIPIATMIAICFVPETPMWLLSKNRADDALKSLQWLRGWVSPKAVEQEFQEMKRYSLHS 280
Query: 263 ATLYVADSEYTTDQRKSSQLSK--LLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFL 320
A + + +T + L++ L L R +RPF+++M+ F ++ L MRP+L
Sbjct: 281 AKCAICEKSGSTTTCQHPPLTEWTKLKELTRKRNLRPFVLVMLFFVFGQLSGLTGMRPYL 340
Query: 321 VEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSI 380
V+IF+ +G+P+ + W V TG+L + + V +++ +GKR + + S + + LSI
Sbjct: 341 VQIFQAYGVPLDANWATVSTGLLGLIANIVCMVSIKFVGKRRLAITSMAVTALSCISLSI 400
Query: 381 CAMNLQWPGW-----------------IPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQV 423
A N PGW IP+ +F + + G+LP+PW+LLSEVFP +
Sbjct: 401 YAFNTFPPGWTSFDNHPGTSHVTSMGYIPMVLFFMLAFFTSVGVLPVPWILLSEVFPFRN 460
Query: 424 RGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDR 483
R +A GITAA V++F++TKTY NL S L G + Y ++ +G ++YF++PETE R
Sbjct: 461 RSLACGITAALHYVMSFVTTKTYFNLESALSLPGVILFYGVMGMVGLAFVYFFLPETEKR 520
Query: 484 TLQEILDFFAENKSA-RDFKRPSKSKQ 509
TL++I +F++NK D P +++
Sbjct: 521 TLEDIELYFSDNKRKLTDIYIPRRNRD 547
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170043906|ref|XP_001849608.1| sugar transporter [Culex quinquefasciatus] gi|167867183|gb|EDS30566.1| sugar transporter [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 187/492 (38%), Positives = 293/492 (59%), Gaps = 29/492 (5%)
Query: 27 FRSACSQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPD--LILSDEQS 84
FR+ Q AS A+NFLL LGMA PT+V+ L + N+ +PD L + Q+
Sbjct: 43 FRTILPQILASTAKNFLLLDLGMAVAFPTIVIPAL--RGLKNR----APDEFLHFTPAQA 96
Query: 85 SWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVC 144
SW GS+ ++ P GS++SG LE +GRKR MILV P +GW++L+ A ++ + + +
Sbjct: 97 SWFGSVAYICQPIGSVLSGIILEPLGRKRSMILVNIPHIIGWLMLHFAGSLEEMYIAAIL 156
Query: 145 MGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTDWRTTVLISA 204
+GL VG EAPI++Y+GEI +P +RG L+ AG A G F+++L+ +T WR T I
Sbjct: 157 LGLGVGFMEAPIVTYVGEICQPSIRGILTSCAGVAVMLGFFMVYLLGTVTTWRITAAICV 216
Query: 205 IFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSA- 263
P+ TMI I F+PE+P WL+SK R E+A +SL+W+RGW V EF+++ + + +A
Sbjct: 217 SIPLATMIAICFVPETPMWLLSKDRKEDARKSLQWLRGWVSPKAVEKEFQEMQRYSANAA 276
Query: 264 --TLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLV 321
T D ++ K L L+R +RPF+++M+LF ++ L MRP+LV
Sbjct: 277 KCTPCQKAQSVKCDHPPPTEWMK-LQELMRKRNLRPFVLVMLLFLFGQLSGLTGMRPYLV 335
Query: 322 EIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSIC 381
+IF+ +G+P+ + W V TG+L + + V +++ +GKR + L+S + + L+I
Sbjct: 336 QIFQAYGVPLDANWATVSTGLLGLMANIVCMMSIKFVGKRRLALFSLCFTSLSCISLAIY 395
Query: 382 AMNLQWPGW-----------------IPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVR 424
A N+ PGW IP+ +F + + G+LP+PW+LLSEVFP + R
Sbjct: 396 AFNVFPPGWTSFDVHEKVNTADGLNYIPMLLFFLLAFSTSVGVLPVPWILLSEVFPFKSR 455
Query: 425 GIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRT 484
+A GITAA + + F++TKTY NL S L G + Y + +G +++YF++PETE RT
Sbjct: 456 SMACGITAALNYAMTFVTTKTYFNLESSLSLPGVILFYGICGCIGVLFVYFFLPETEKRT 515
Query: 485 LQEILDFFAENK 496
L++I +F++NK
Sbjct: 516 LEDIEIYFSDNK 527
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157125518|ref|XP_001654366.1| sugar transporter [Aedes aegypti] gi|108873601|gb|EAT37826.1| AAEL010219-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 193/513 (37%), Positives = 296/513 (57%), Gaps = 38/513 (7%)
Query: 15 EAEKEKVNVRYG---------FRSACSQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKV 65
EA+ V V+ G FR+ Q AS A+NFLL LGMA +PT+V+ L +
Sbjct: 22 EAKNGIVKVKTGDEQKPEAGKFRTILPQILASTAKNFLLLDLGMAVALPTIVIPAL--RG 79
Query: 66 ASNQTILESPD--LILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFF 123
N+ +PD L + Q+SW GSI ++ P GS++SG LE +GRKR MILV P
Sbjct: 80 LKNR----APDEFLHFTPVQASWFGSIAYICQPVGSVLSGIVLEPLGRKRSMILVNIPHI 135
Query: 124 LGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFG 183
+ W++LY A ++ + + + +GL VG EAPI++Y+GEI +P +RG L+ AG A G
Sbjct: 136 IAWLMLYQAGSLEEMYIAAILLGLGVGFMEAPIVTYVGEICQPSIRGILTSCAGVAVMLG 195
Query: 184 VFIIFLIYALTDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGW 243
F++FL+ +T WR T I P+ TMI I F+PE+P WL+SK R E+A +SL+W+RGW
Sbjct: 196 FFVVFLLGTVTTWRITAAICVTVPLATMIAICFVPETPMWLLSKNRKEDARKSLQWLRGW 255
Query: 244 SKKHKVRVEFEQLV---KDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIM 300
V EF+++ K+ T D S+ K L L+R +RPF +
Sbjct: 256 VSPDAVEKEFQEMQRYNKNAAQCTPCQKSQNSKCDHPPPSEWMK-LKELMRKRNLRPFAL 314
Query: 301 IMILFFITIIASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGK 360
+M LF ++ L MRP+LV+IF+ +G+P+ + W V T +L + + V +++ +GK
Sbjct: 315 VMFLFVFGQLSGLTGMRPYLVQIFQAYGVPLDANWATVSTALLGLAANIVCMVSIKFVGK 374
Query: 361 RGMTLWSTGINTFFTLMLSICAMNLQWPGW-----------------IPLTIFCTCFWVS 403
R + L+S + + L L++ A N+ PGW + + +F T + +
Sbjct: 375 RRLALFSFTLTSLSCLSLAVYAFNVFPPGWSSSDAHDSVNTANGLNYLAMFLFFTLAFAT 434
Query: 404 GYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYT 463
G+LP+PW+LLSEVFP + R +A GITAA + + F++TKTY NL S F L G + Y
Sbjct: 435 SVGVLPVPWILLSEVFPFKNRSLACGITAALNYAMTFVTTKTYFNLESSFSLPGVIMFYG 494
Query: 464 LVSFLGFIYIYFYVPETEDRTLQEILDFFAENK 496
+ +G +++YF++PETE RTL++I +F++N
Sbjct: 495 ICGAIGVLFVYFFLPETEKRTLEDIELYFSDNN 527
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193697617|ref|XP_001943575.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 175/483 (36%), Positives = 275/483 (56%), Gaps = 19/483 (3%)
Query: 15 EAEKEKVNVRYGFRSACSQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILES 74
+ + + YG S +Q A++AQ+FLL LGM M T+V+ L + S
Sbjct: 6 DIDGDNAAKNYGAMSTLAQVCATIAQSFLLVGLGMELTMSTIVIQDLYNNPKS------- 58
Query: 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAET 134
+ L+ E+ SW GSILF+FHP GS +SG+ E GRKR M+L P GWI+LY +
Sbjct: 59 -EFSLTTEEVSWYGSILFVFHPTGSFLSGFLQERFGRKRCMVLANVPSIFGWIMLYYTHS 117
Query: 135 VSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT 194
V + TV MGLS+G EAPI+SY+GEI+EPR RG+++ A A G+ +I+++
Sbjct: 118 VVSLYASTVLMGLSIGFSEAPILSYVGEITEPRHRGTMASLATTAGMIGMLLIYILGYFF 177
Query: 195 DWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFE 254
+WR L+S + PI + ++ IPESP WL++ G+ E+A++SL W+RGW K V+ E
Sbjct: 178 EWRIVALLSTLCPITCICLVMLIPESPLWLIANGKNEKAKKSLCWLRGWVKPEMVKAELL 237
Query: 255 QLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQ 314
+L++ V+ + + + + +S L L+ P + RPF ++MI+FFI+ I L
Sbjct: 238 ELIRYNE-----VSGTRNGKVKIEKNNISSKLAQLLDPAVYRPFRLVMIVFFISYIVCLL 292
Query: 315 PMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFF 374
P +P+ +I GL + V+ +L G + ++V LGKR + + S INT
Sbjct: 293 PSKPYFSQIMNEVGLSEDRSLLFVIFAVLQNIGCIILVLSVKHLGKRFLAVMSVSINTIL 352
Query: 375 TLMLSICAMNL-----QWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASG 429
++ + M L + WIP T+ + + G + LPWML+SE+FP + RG+A+G
Sbjct: 353 LILFGLYIMALKNGYTESTPWIP-TMILSGISLFGTSISTLPWMLVSEIFPNKSRGVAAG 411
Query: 430 ITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEIL 489
AA S ++ FI TK+Y+ + L T+ ++ + G +Y+YFY+PETE +TL EI
Sbjct: 412 SCAALSYLLMFILTKSYLIVEINLTLEYTMLLFGGIGIFGLVYLYFYLPETEKKTLLEIE 471
Query: 490 DFF 492
++F
Sbjct: 472 EYF 474
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328719965|ref|XP_001943521.2| PREDICTED: facilitated trehalose transporter Tret1-like isoform 1 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 169/492 (34%), Positives = 276/492 (56%), Gaps = 18/492 (3%)
Query: 13 LSEAEKEKVNVRYGFRSACSQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTIL 72
+ E + + +YG ++ +Q A++AQ+FL LGM + +V+ L S +I
Sbjct: 4 VKEIQAQDSTRKYGPKATLAQCLATIAQSFLFIGLGMNLSISAIVIRDLYRNPNSEFSI- 62
Query: 73 ESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLA 132
+ ++SW GS+LF+ HP G ++SG + G+KR MIL P GW+LLY A
Sbjct: 63 -------TITEASWYGSLLFIIHPVGCLLSGILQDKFGKKRCMILANVPSIFGWVLLYSA 115
Query: 133 ETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYA 192
+ ++ T+ MG S G SY+GEISEPR+RGSL A G +++++
Sbjct: 116 HSSVLLCASTLLMGFSTGFGAGSTSSYVGEISEPRLRGSLGSLGSTAMRIGTLLMYILGL 175
Query: 193 LTDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVE 252
DWRT L S PI+ + + FIPESP WL++KGR ++A++++ W+RGW + K+ E
Sbjct: 176 FFDWRTVALFSTFCPIMCICFVIFIPESPIWLIAKGRNDKAKKAMCWLRGWVEPEKINPE 235
Query: 253 FEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIAS 312
F +LV + + TD LS L + P + RP +++I+FF++ + S
Sbjct: 236 FLELVHYNQVSG--TQGGKIDTDDNNKKFLSNLAQF-KNPAVYRPLRLMLIIFFVSFVVS 292
Query: 313 LQPMRPFLVEIFRTFGL-PMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGIN 371
+ P RPF+ +I + GL ++E +++LTG+ SI G ++T+TV++ GKR +TL + IN
Sbjct: 293 IFPTRPFITKIMKEVGLFDNQNESLVLLTGLTSI-GCIIATVTVHRTGKRLLTLLTLSIN 351
Query: 372 T-----FFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGI 426
T F ++S+ A + I LT C +++ G+ +PWM+L EVFP + RG+
Sbjct: 352 TVLLLSFGAYIISVKAEYFSYSPLISLTFLCGIYFIGSCGISCIPWMILIEVFPNKSRGV 411
Query: 427 ASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQ 486
A+ ++ + ++ F TK+Y+ + + L T+ ++ V G IY YFY PETE++TL
Sbjct: 412 ATSASSGLAYIILFTLTKSYLIVEMYLSLEYTMILFGCVGVFGLIYFYFYFPETENKTLL 471
Query: 487 EILDFFAENKSA 498
EI +FF K+
Sbjct: 472 EIEEFFVSTKNG 483
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193669080|ref|XP_001943832.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 177/496 (35%), Positives = 273/496 (55%), Gaps = 35/496 (7%)
Query: 24 RYGFRSACSQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQ 83
R+ + SQ A VAQ+ L+ LGM +PT+V+G L + L L D Q
Sbjct: 30 RHKHKRILSQICAMVAQSLLMLDLGMMIVVPTIVIGALHNA---------KEGLSLDDSQ 80
Query: 84 SSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTV 143
SSW+ SI+ + P G ++SG GRKR ++LV P + W LLY AE+ I+ +
Sbjct: 81 SSWIASIILMCQPLGCLVSGCVQSVFGRKRCLLLVNVPHLVAWYLLYSAESSWILYTASA 140
Query: 144 CMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTDWRTTVLIS 203
MG+S+G E P ++YIGEISEP +RG LS F+ + G + F++ + WRTT+L+S
Sbjct: 141 TMGISIGFLEGPTMAYIGEISEPDVRGILSTFSSSMIVMGHLLEFVLGWIFPWRTTMLVS 200
Query: 204 AIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQL------- 256
+ P+L + I+ IPESP WL++KGR +EA SLRW+RGW+ +V EF L
Sbjct: 201 CLVPVLAAVAISLIPESPVWLLTKGRRDEALSSLRWLRGWASAEEVSEEFHNLELYCQES 260
Query: 257 -----------VKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILF 305
++ ++ T V DSE+ T S+ ++ L+RP I+ P ++++ F
Sbjct: 261 KNEFNNLLQAKIRKSSGYT-GVPDSEFATKSEPSAI--DIVRDLLRPGILIPLRLVVVYF 317
Query: 306 FITIIASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTL 365
F ASL MRP+++E+F +P+ + V + L G+ + V +GKR ++L
Sbjct: 318 FFFHAASLTAMRPYMIEVFSRLQVPVSPSVLTVWSAALQGAGALICICLVRLVGKRVLSL 377
Query: 366 WSTGINTFFTLML---SICAMNLQWP--GWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFP 420
S L L + QW IPL +FCT ++ G+ P+PW+L+SEVFP
Sbjct: 378 VSMSCCALCCLSLGAYTYLTTQHQWSPVPTIPLLLFCTLYFAMNLGISPVPWLLVSEVFP 437
Query: 421 LQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPET 480
+ RG ASG AA+ ++ F+ +KT++NL S L+G F+Y +++ +G I++Y +PET
Sbjct: 438 NRGRGEASGACAATFYIIAFLVSKTWLNLQSSVELYGCFFLYGILAAIGIIFVYKCLPET 497
Query: 481 EDRTLQEILDFFAENK 496
E +TL EI F +
Sbjct: 498 EGKTLAEIEKNFTKKN 513
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328713668|ref|XP_001950346.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 307 bits (786), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 173/495 (34%), Positives = 278/495 (56%), Gaps = 28/495 (5%)
Query: 11 EILSEAEKEKVNVRYGFRSACSQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQT 70
+I E + E V YG ++ +Q A++ Q+ LL ++GM M TVV+G L
Sbjct: 12 DIRCENDLE-TKVTYGRKATIAQLLATMVQSLLLVNVGMELAMATVVIGSLYKN------ 64
Query: 71 ILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLY 130
+ + +++D +SSW GSIL+L P GS +SGY ++ G+K ++L P GWILL+
Sbjct: 65 --PNAEFLITDSESSWYGSILYLCQPIGSCLSGYAQKHFGKKSCVVLACVPSIFGWILLW 122
Query: 131 LAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLI 190
A +V+++ T+ MG+ +G + P SYIGEI EPR+RG ++ AC GV F +
Sbjct: 123 YANSVTMLYWSTITMGMGLGFNDGPAYSYIGEICEPRLRGIMACVVNMACLIGVLSSFGL 182
Query: 191 YALTDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVR 250
+ W+T +SA+ P++ + +AFIPESP WL+SKGR E+A ++ W+RGW V
Sbjct: 183 SYVFHWKTVAAVSALCPVMCLTFVAFIPESPIWLLSKGRNEKAMNAICWLRGWVDPCVVA 242
Query: 251 VEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLN----YLVRPEIVRPFIMIMILFF 306
E+++L+ Y S DQ K+ + SK L ++ + RP ++ + +
Sbjct: 243 TEYQELM-------FYYKTS---VDQSKTIKASKGLFSSFLWVKSASVYRPLRLVTVYYV 292
Query: 307 ITIIASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLW 366
T+I+ L P RP++V++ G+ LVL G + + GS T+TV KLGKR +TL
Sbjct: 293 FTLISCLTPCRPYIVKLMYESGVKDTHSISLVLFGFMQLAGSVGLTLTVRKLGKRMLTLS 352
Query: 367 STGINTFFTLMLSI--CAMN---LQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPL 421
+ INT M ++ MN + ++P+ ++ + GML +PW L+SE++P
Sbjct: 353 TLCINTLAICMFAVYFLCMNSKLISTETYVPMVLYSIIMFSGAMGMLTVPWTLVSEIYPN 412
Query: 422 QVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETE 481
+ +G AS +T A ++ F +TK Y+++ + GL T F+ SF+GFIY+Y +PETE
Sbjct: 413 EAKGFASSLTTAIFYILTFSATKVYLSVENTLGLTNTFFMMAACSFVGFIYLYRNMPETE 472
Query: 482 DRTLQEILDFFAENK 496
++T EI +FF K
Sbjct: 473 NKTFMEIEEFFVPKK 487
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328719967|ref|XP_003246913.1| PREDICTED: facilitated trehalose transporter Tret1-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 168/492 (34%), Positives = 273/492 (55%), Gaps = 25/492 (5%)
Query: 13 LSEAEKEKVNVRYGFRSACSQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTIL 72
+ E + + +YG + A++AQ+FL LGM + +V+ L S +I
Sbjct: 4 VKEIQAQDSTRKYGPK-------ATLAQSFLFIGLGMNLSISAIVIRDLYRNPNSEFSI- 55
Query: 73 ESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLA 132
+ ++SW GS+LF+ HP G ++SG + G+KR MIL P GW+LLY A
Sbjct: 56 -------TITEASWYGSLLFIIHPVGCLLSGILQDKFGKKRCMILANVPSIFGWVLLYSA 108
Query: 133 ETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYA 192
+ ++ T+ MG S G SY+GEISEPR+RGSL A G +++++
Sbjct: 109 HSSVLLCASTLLMGFSTGFGAGSTSSYVGEISEPRLRGSLGSLGSTAMRIGTLLMYILGL 168
Query: 193 LTDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVE 252
DWRT L S PI+ + + FIPESP WL++KGR ++A++++ W+RGW + K+ E
Sbjct: 169 FFDWRTVALFSTFCPIMCICFVIFIPESPIWLIAKGRNDKAKKAMCWLRGWVEPEKINPE 228
Query: 253 FEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIAS 312
F +LV + + TD LS L + P + RP +++I+FF++ + S
Sbjct: 229 FLELVHYNQVSG--TQGGKIDTDDNNKKFLSNLAQF-KNPAVYRPLRLMLIIFFVSFVVS 285
Query: 313 LQPMRPFLVEIFRTFGL-PMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGIN 371
+ P RPF+ +I + GL ++E +++LTG+ SI G ++T+TV++ GKR +TL + IN
Sbjct: 286 IFPTRPFITKIMKEVGLFDNQNESLVLLTGLTSI-GCIIATVTVHRTGKRLLTLLTLSIN 344
Query: 372 T-----FFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGI 426
T F ++S+ A + I LT C +++ G+ +PWM+L EVFP + RG+
Sbjct: 345 TVLLLSFGAYIISVKAEYFSYSPLISLTFLCGIYFIGSCGISCIPWMILIEVFPNKSRGV 404
Query: 427 ASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQ 486
A+ ++ + ++ F TK+Y+ + + L T+ ++ V G IY YFY PETE++TL
Sbjct: 405 ATSASSGLAYIILFTLTKSYLIVEMYLSLEYTMILFGCVGVFGLIYFYFYFPETENKTLL 464
Query: 487 EILDFFAENKSA 498
EI +FF K+
Sbjct: 465 EIEEFFVSTKNG 476
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193664559|ref|XP_001946897.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 177/516 (34%), Positives = 287/516 (55%), Gaps = 41/516 (7%)
Query: 11 EILSEAEKEKVNVRYGFRSACSQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQT 70
+I E K + N+ F+S+ +Q + QN ++ GM+ +PTVV+G L S++
Sbjct: 8 KIDPENAKNEYNL---FKSSLAQIGTIIVQNVIMLGFGMSLAIPTVVIGSL----MSDEV 60
Query: 71 ILESPD-LILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILL 129
D + L++ ++SW GS+L + HP G ++SG E +GRK M LV P +GW +L
Sbjct: 61 DGGGGDSMTLTETEASWYGSVLLVCHPTGGLLSGVLQEIVGRKWCMALVSVPQLVGWYVL 120
Query: 130 YLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFL 189
+ A + + V +GLS+G EAP+++Y+GE EPR+RG LS + G FI +L
Sbjct: 121 WRAGNAFDLYVSCVALGLSMGLSEAPVLTYVGETVEPRLRGPLSSVSTFTIMLGSFIAYL 180
Query: 190 IYALTDWRTTVLISAIFPILTMIMIAFI-PESPTWLVSKGRLEEAERSLRWVRGWSKKHK 248
+ + WRT +I+ P+++ + + PESP WL+S+ R +EA+RSL ++RG
Sbjct: 181 MSTVMPWRTVAMINMAVPVISFAAVVLLTPESPVWLLSRNRPDEAKRSLAYLRGCVSTAD 240
Query: 249 VRVEFEQL---VKDTNSATL--------------YVADSEYTTDQRKSSQLSKLLNY--- 288
V EF +L S L YV + T+ ++++ L N
Sbjct: 241 VEDEFSELSIYAGFNKSVDLEQYADCGIDERRLSYVKYLQINTNDTTNAEIDILANQNQI 300
Query: 289 --------LVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKSEWVLVLT 340
PE+ RPF+ IM+ FF A+ P +P+L+ +F GLP ++W LV T
Sbjct: 301 GFLDTLRSFWSPELNRPFLFIMLFFFFWSFATFIPAKPYLITVFSEIGLPCSAQWTLVYT 360
Query: 341 GILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQW----PGWIPLTIF 396
IL++ G+ ++ +TV K+GKR +TL S + F L + + ++ + WIP+ +
Sbjct: 361 SILTLVGTLLNVLTVAKIGKRPITLVSMALCAFSMLGIGMYMLSTTYFSFSSTWIPMILL 420
Query: 397 CTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLH 456
F+ SGYG+ P+PWML+SE++P + RGIASG+TAA + ++ FI TK ++ + WF L
Sbjct: 421 NALFFFSGYGVFPIPWMLVSEIYPTKGRGIASGLTAALAFLMTFILTKFFLEMQEWFTLP 480
Query: 457 GTLFIYTLVSFLGFIYIYFYVPETEDRTLQEILDFF 492
G +Y ++ +G +Y+Y +PETE++TLQ+I FF
Sbjct: 481 GLFIVYGSITLVGTLYLYACMPETENKTLQDIEHFF 516
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 513 | ||||||
| FB|FBgn0051100 | 716 | CG31100 [Drosophila melanogast | 0.653 | 0.467 | 0.329 | 2.9e-70 | |
| UNIPROTKB|Q17NV8 | 806 | Tret1 "Facilitated trehalose t | 0.764 | 0.486 | 0.275 | 6.2e-50 | |
| UNIPROTKB|B4LPX5 | 911 | Tret1 "Facilitated trehalose t | 0.787 | 0.443 | 0.270 | 1.3e-49 | |
| UNIPROTKB|A5LGM7 | 504 | Tret1 "Facilitated trehalose t | 0.818 | 0.833 | 0.262 | 1.5e-49 | |
| UNIPROTKB|B0WC46 | 517 | Tret1 "Facilitated trehalose t | 0.764 | 0.758 | 0.272 | 2.5e-49 | |
| UNIPROTKB|A9ZSY3 | 505 | Tret1 "Facilitated trehalose t | 0.793 | 0.805 | 0.272 | 6.7e-49 | |
| UNIPROTKB|A9ZSY2 | 502 | Tret1 "Facilitated trehalose t | 0.769 | 0.786 | 0.282 | 1.8e-48 | |
| UNIPROTKB|B4KR05 | 863 | Tret1 "Facilitated trehalose t | 0.787 | 0.468 | 0.266 | 5.7e-48 | |
| UNIPROTKB|Q291H8 | 868 | Tret1 "Facilitated trehalose t | 0.764 | 0.451 | 0.265 | 1.6e-47 | |
| UNIPROTKB|B4GAP7 | 869 | Tret1 "Facilitated trehalose t | 0.764 | 0.451 | 0.265 | 1.6e-47 |
| FB|FBgn0051100 CG31100 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 534 (193.0 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
Identities = 114/346 (32%), Positives = 182/346 (52%)
Query: 27 FRSACSQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSW 86
FR A QF A +N LLF GM G PT+V+ + ++T S D++L+ ++ SW
Sbjct: 44 FRRALPQFLAVSIKNILLFGYGMTLGFPTIVIPAIQGGEGRSET---SGDILLNKDEISW 100
Query: 87 LGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCM- 145
SI + P G + SG + +G++R M V P W++ + A T + + +C+
Sbjct: 101 FSSINLICVPLGCLFSGLLTQPLGKRRAMQFVNLPILAAWLMFHFA-TRTEHLYAALCLA 159
Query: 146 GLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNF-GVFIIFLIYALTDWRTTVLISA 204
GL G EAP+++Y+ EI+EP+ RG LS G C GVFI F++ +L DWR+ +S+
Sbjct: 160 GLGGGLMEAPVLTYVAEITEPKYRGILSAL-GTTCVITGVFIQFILGSLMDWRSVAAVSS 218
Query: 205 IFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKD--TNS 262
FP++T+IM+ F+PESP WL+ + R EA +SL+W+RGW +H + EF QL + T
Sbjct: 219 AFPVITIIMLCFVPESPVWLIREQRFREAVKSLQWLRGWVPEHMIEAEFNQLYDELITQK 278
Query: 263 ATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPXXXXXXXXXXXXXASLQPMRPFLVE 322
A AD QR++ L + L + + P + P++ + V+
Sbjct: 279 AIELSADGIPPPGQRRT--LGQRLRMWRKRSFLVPFLLVSFSFFTGHFSGKTPLQTYAVQ 336
Query: 323 IFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWST 368
IF T PM +L G+ + + + + ++ GKR + L ST
Sbjct: 337 IFHTLKAPMNKYHATILLGVAEMLATILGVVLIHFTGKRPLVLVST 382
|
|
| UNIPROTKB|Q17NV8 Tret1 "Facilitated trehalose transporter Tret1" [Aedes aegypti (taxid:7159)] | Back alignment and assigned GO terms |
|---|
Score = 524 (189.5 bits), Expect = 6.2e-50, P = 6.2e-50
Identities = 115/418 (27%), Positives = 215/418 (51%)
Query: 79 LSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSII 138
++D+ SW+G I+ L G I+ G +EY+GRK ++ PF + W+L+ A V+++
Sbjct: 383 VTDQSGSWVGGIMPLAGLAGGILGGPLIEYLGRKNTILATATPFIISWLLIACATHVAMV 442
Query: 139 MLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTDWRT 198
++G G SVG + Y+GE +P +RG+L L A N G+ + F+ DW
Sbjct: 443 LVGRALSGFSVGVASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGKYMDWSG 502
Query: 199 TVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVK 258
+ A PI ++++ IPE+P W VS+GR + A ++L+W+RG KK V E + ++K
Sbjct: 503 LAFLGAALPIPFLLLMFLIPETPRWYVSRGRDDRARKALQWLRG--KKADVDPELKGIIK 560
Query: 259 DTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPXXXXXXXXXXXXXASLQPMRP 318
A +R +SQ S +L+ L++ ++P + + +
Sbjct: 561 SHQDA------------ERHASQ-SAMLD-LMKKANLKPLLISLGLMFFQQLSGINAVIF 606
Query: 319 FLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWS--TGINTFFTL 376
+ V+IF+ G + ++ G+++ +F++T+ +++LG++ + S I T TL
Sbjct: 607 YTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATMLIDRLGRKMLLYISDVAMIITLMTL 666
Query: 377 ----MLSICAMNLQWPGWIPLTIFCTCFWVSGY--GMLPLPWMLLSEVFPLQVRXXXXXX 430
+ ++ GW+PL F +V G+ G P+PW+++ E+ P ++R
Sbjct: 667 GGFFYVKNSGQDVSQVGWLPLAAFV--IYVLGFSLGFGPIPWLMMGEILPGKIRGSAASV 724
Query: 431 XXXXXXVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEI 488
FI TKT+ ++ + G HGT +++ + +G ++ FYVPET+ ++L++I
Sbjct: 725 ATAFNWSCTFIVTKTFADIINAIGTHGTFWMFGSICVIGLAFVIFYVPETQGKSLEDI 782
|
|
| UNIPROTKB|B4LPX5 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila virilis (taxid:7244)] | Back alignment and assigned GO terms |
|---|
Score = 524 (189.5 bits), Expect = 1.3e-49, P = 1.3e-49
Identities = 117/432 (27%), Positives = 219/432 (50%)
Query: 65 VASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFL 124
V+ T L S +++ + +SW+G I+ L G I G F+EY+GR+ ++ PF +
Sbjct: 476 VSMTNTNLTS--FVVTPQAASWVGGIMPLAGLAGGIAGGPFIEYLGRRNTILATAVPFIV 533
Query: 125 GWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGV 184
W+L+ A V +++ G G VG + Y+GE +P +RG+L L A N G+
Sbjct: 534 SWLLIACAVNVIMVLCGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGI 593
Query: 185 FIIFLIYALTDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWS 244
+ F+ DW + A P+ +I++ IPE+P W VS+GR E A ++L W+RG
Sbjct: 594 LLCFVAGTYMDWSMLAFLGASLPVPFLILMFLIPETPRWYVSRGREERARKALVWLRG-- 651
Query: 245 KKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPXXXXXXX 304
K+ V E + L++ AD++ R+++Q +K+L L R + +P
Sbjct: 652 KEADVEPELKGLMRSQ-------ADAD-----RQATQ-NKMLELLKRSNL-KPLSISLGL 697
Query: 305 XXXXXXASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMT 364
+ + + + V+IF+ G + ++ G+++ +F++TI +++ G++ +
Sbjct: 698 MFFQQLSGINAVIFYTVQIFQDAGSTIDGNVCTIIVGVVNFAATFIATILIDRAGRKVLL 757
Query: 365 LWSTG--INTFFTLM-LSIC---AMNLQWPGWIPLTIFCTCFWVSGY--GMLPLPWMLLS 416
S + T F L C M+ GW+PL+ C ++ G+ G P+PW+++
Sbjct: 758 YVSNVMMVLTLFVLGGFFYCKSSGMDTSNVGWLPLS--CFVIYILGFSLGFGPIPWLMMG 815
Query: 417 EVFPLQVRXXXXXXXXXXXXVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFY 476
E+ P ++R F+ TK++ ++ + G HG +++ + F+G ++ FY
Sbjct: 816 EILPAKIRGSAASVATAFNWSCTFVVTKSFQDMIDFMGAHGAFWMFGAICFIGLFFVIFY 875
Query: 477 VPETEDRTLQEI 488
VPET+ +TL++I
Sbjct: 876 VPETQGKTLEDI 887
|
|
| UNIPROTKB|A5LGM7 Tret1 "Facilitated trehalose transporter Tret1" [Polypedilum vanderplanki (taxid:319348)] | Back alignment and assigned GO terms |
|---|
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 119/453 (26%), Positives = 224/453 (49%)
Query: 49 MAFGMPTVVVGVLDHKVASNQTILESPDLI---LSDEQSSWLGSILFLFHPFGSIISGYF 105
+A M ++VVG + +++ + ++++++SW+G I+ L G I G F
Sbjct: 48 IAVSMGSMVVGFASAYTSPALVSMQNTTITSFKVTEQEASWVGGIMPLAGLAGGIAGGPF 107
Query: 106 LEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISE 165
+EY+GRK ++ PF + W+L+ A ++ +++ G G VG + Y+GE +
Sbjct: 108 IEYLGRKNTILATAVPFIVAWLLIAFANSIWMVLAGRALSGFCVGIASLSLPVYLGETVQ 167
Query: 166 PRMRGSLSLFAGAACNFGVFIIFLIYALTDWRTTVLISAIFPILTMIMIAFIPESPTWLV 225
P +RG+L L A N G+ I F+ +W I +I PI M++ IPE+P W V
Sbjct: 168 PEVRGTLGLLPTAFGNIGILICFVAGKYVNWSGLAFIGSILPIPFMVLTLLIPETPRWFV 227
Query: 226 SKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKL 285
++GR E A ++L+W+RG KK V E + +VK A +R +SQ + +
Sbjct: 228 TRGREERARKALQWLRG--KKADVEPELKGIVKSHCEA------------ERHASQ-NAI 272
Query: 286 LNYLVRPEIVRPXXXXXXXXXXXXXASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSI 345
+ + R + +P + + + + V IF+ G + ++ G+++
Sbjct: 273 FDLMKRSNL-KPLLIALGLMFFQQLSGINAVIFYTVSIFKDAGSTIDENLCTIIVGVVNF 331
Query: 346 TGSFVSTITVNKLGKR--------GMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFC 397
+F +T+ +++LG++ M + + TFF S ++ GW+PL F
Sbjct: 332 GATFFATVLIDRLGRKILLYISEVAMVITLLTLGTFFYYKNS--GNDVSNIGWLPLASFV 389
Query: 398 TCFWVSGY--GMLPLPWMLLSEVFPLQVRXXXXXXXXXXXXVVNFISTKTYINLTSWFGL 455
+V G+ G+ P+PW++L E+ P ++R FI TKT+ ++ + G
Sbjct: 390 --IYVIGFSSGVGPIPWLMLGEILPGKIRGSAASVATGFNWTCTFIVTKTFADIVAAIGN 447
Query: 456 HGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEI 488
HG + + ++ +G ++ F+VPET+ ++L+EI
Sbjct: 448 HGAFWFFGVICLIGLFFVIFFVPETQGKSLEEI 480
|
|
| UNIPROTKB|B0WC46 Tret1 "Facilitated trehalose transporter Tret1" [Culex quinquefasciatus (taxid:7176)] | Back alignment and assigned GO terms |
|---|
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 114/418 (27%), Positives = 212/418 (50%)
Query: 79 LSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSII 138
++D+ SW+G I+ L G I+ G +EY+GRK ++ PF + W+L+ A V+++
Sbjct: 94 VTDQSGSWVGGIMPLAGLVGGILGGPLIEYLGRKNTILATATPFIISWLLIACATHVAMV 153
Query: 139 MLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTDWRT 198
++G G SVG + Y+GE +P +RG+L L A N G+ + F+ DW
Sbjct: 154 LVGRALSGFSVGVASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGNYMDWSE 213
Query: 199 TVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVK 258
+ A P+ +I++ IPE+P W VS+GR + A ++L+W+RG KK V E + ++K
Sbjct: 214 LAFLGATLPVPFLILMFLIPETPRWYVSRGRDDRARKALQWLRG--KKADVDPELKGIIK 271
Query: 259 DTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPXXXXXXXXXXXXXASLQPMRP 318
A +R +SQ S +L+ L + + +P + + +
Sbjct: 272 SHQDA------------ERHASQ-SAMLDLLKKTNL-KPLLISLGLMFFQQLSGINAVIF 317
Query: 319 FLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWS--TGINTFFTL 376
+ V+IF+ G + ++ G+++ +F++T+ +++LG++ + S I T TL
Sbjct: 318 YTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATLLIDRLGRKMLLYISDIAMIITLMTL 377
Query: 377 MLSICAMN----LQWPGWIPLTIFCTCFWVSGY--GMLPLPWMLLSEVFPLQVRXXXXXX 430
N + GW+PL F +V G+ G P+PW+++ E+ P ++R
Sbjct: 378 GGFFYVKNNGGDVSHIGWLPLASFV--IFVLGFSLGFGPIPWLMMGEILPGKIRGSAASV 435
Query: 431 XXXXXXVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEI 488
F+ TKT+ ++ + G HG +++ V +G +++ YVPET+ ++L++I
Sbjct: 436 ATAFNWSCTFVVTKTFADIIASIGTHGAFWMFGSVCVVGLVFVIMYVPETQGKSLEDI 493
|
|
| UNIPROTKB|A9ZSY3 Tret1 "Facilitated trehalose transporter Tret1" [Bombyx mori (taxid:7091)] | Back alignment and assigned GO terms |
|---|
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 120/440 (27%), Positives = 221/440 (50%)
Query: 77 LILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVS 136
L ++ E+ +W+G ++ L G I+ G +EY+GRK+ ++ PF +GW+L+ A V
Sbjct: 83 LDITKEEITWVGGLMPLAALVGGIVGGPLIEYLGRKKTIMGTAVPFTIGWMLIANAINVV 142
Query: 137 IIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTDW 196
++ G V G+ VG YIGE +P +RG+L L A N G+ + FL+ + DW
Sbjct: 143 MVFAGRVICGVCVGIVSLAFPVYIGETIQPEVRGALGLLPTAFGNTGILLAFLVGSYLDW 202
Query: 197 RTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQL 256
A P+ +++ PE+P W VSK R++EA +SLRW+RG V +E
Sbjct: 203 SNLAFFGAAIPVPFFLLMILTPETPRWYVSKARVQEARKSLRWLRG----KNVNIE---- 254
Query: 257 VKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPXXXXXXXXXXXXXASLQPM 316
K+ T+ +S+ T SK YL P ++ A +
Sbjct: 255 -KEMRDLTISQTESDRTGGNAFKQLFSK--RYL--PAVMISLGLMLFQQLTGINAVIF-- 307
Query: 317 RPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTL 376
+ IF+ G + ++ G+++ +F++T+ +++LG++ + L+ + + T
Sbjct: 308 --YAASIFQMSGSSVDENLASIIIGVVNFISTFIATMLIDRLGRK-VLLYISSV-AMITT 363
Query: 377 MLSICA--------MNLQWPGWIPLTIFCTCFWVSGY--GMLPLPWMLLSEVFPLQVRXX 426
+L++ A +++ GW+PL C +V G+ G P+PW++L E+ P ++R
Sbjct: 364 LLALGAYFYLKQNHIDVTAYGWLPLA--CLVIYVLGFSIGFGPIPWLMLGEILPSKIRGT 421
Query: 427 XXXXXXXXXXVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQ 486
FI TKT+ N+ +HGTL+++ ++ G +++ F+VPET+ ++L+
Sbjct: 422 AASLATGFNWTCTFIVTKTFQNIIDAIYMHGTLWLFAVICIGGLLFVIFFVPETKGKSLE 481
Query: 487 EI-LDFFAENKSARDF-KRP 504
EI + + ++ R+ K+P
Sbjct: 482 EIEMKLTSGSRRVRNISKQP 501
|
|
| UNIPROTKB|A9ZSY2 Tret1 "Facilitated trehalose transporter Tret1" [Apis mellifera ligustica (taxid:7469)] | Back alignment and assigned GO terms |
|---|
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 118/418 (28%), Positives = 207/418 (49%)
Query: 82 EQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLG 141
+ + W+GSI+ L G II G +EYIGR+ ++ PF GW+ + LA V++I++G
Sbjct: 83 DMAMWIGSIMPLSALIGGIIGGPCIEYIGRRNTILSTALPFLAGWLFIALATNVAMILVG 142
Query: 142 TVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTDWRTTVL 201
G VG + Y+GE +P +RGSL L N G+ + F WR L
Sbjct: 143 RSICGFCVGVASLSLPVYLGESIQPEVRGSLGLLPTVFGNSGILMCFTAGMYLAWRNLAL 202
Query: 202 ISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTN 261
+ A PI+ +I++ IPE+P W +SKG+++EA +SL+W+RG K + E + + K
Sbjct: 203 LGACIPIIFLILMFLIPETPRWYISKGKIKEARKSLQWLRG--KTADISEELDSIQK--- 257
Query: 262 SATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPXXXXXXXXXXXXXASLQPMRPFLV 321
+++ T+ L+ L R ++P + + + + V
Sbjct: 258 ---MHIESERIATE-------GALIE-LFRKNHIKPVFISLGLMFFQQFSGINAVIFYTV 306
Query: 322 EIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWST-----GINTFFTL 376
+IF+ G + ++ G+++ +FV+ + +++LG++ + S+ + TF T
Sbjct: 307 QIFKDSGSTVDENLSTIIVGLVNFISTFVAAMIIDRLGRKMLLYISSILMCITLFTFGTF 366
Query: 377 MLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRXXXXXXXXXXXX 436
M++ GWIPL +G P+PW+++ E+ P+++R
Sbjct: 367 FYVKELMDVTAFGWIPLMSLIVYVIGFSFGFGPIPWLMMGEILPVKIRGTAASVATAFNW 426
Query: 437 VVNFISTKTYINLTSWFGLHGTLFIY-TLVSFLGFIYIYFYVPETEDRTLQEILDFFA 493
F+ TKTY +L G +GT +++ TLV+ + FI++ VPET R+L+EI FA
Sbjct: 427 SCTFVVTKTYEDLVLHIGPYGTFWLFGTLVA-VAFIFVIICVPETRGRSLEEIERRFA 483
|
|
| UNIPROTKB|B4KR05 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila mojavensis (taxid:7230)] | Back alignment and assigned GO terms |
|---|
Score = 508 (183.9 bits), Expect = 5.7e-48, P = 5.7e-48
Identities = 115/432 (26%), Positives = 216/432 (50%)
Query: 65 VASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFL 124
V+ T L S +++ + +SW+G I+ L G I G F+EY+GR+ ++ PF +
Sbjct: 428 VSMTNTNLTS--FVVTPQAASWVGGIMPLAGLAGGIAGGPFIEYLGRRNTILATAVPFII 485
Query: 125 GWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGV 184
W+L+ A V +++ G G VG + Y+GE +P +RG+L L A N G+
Sbjct: 486 SWLLIACAVNVVMVLCGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGI 545
Query: 185 FIIFLIYALTDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWS 244
+ F+ DW + P+ +I++ IPE+P W VS+GR E A ++L W+RG
Sbjct: 546 LLCFVAGTYMDWSMLAFLGGTLPVPFLILMFLIPETPRWYVSRGREERARKALVWLRG-- 603
Query: 245 KKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPXXXXXXX 304
K+ V E + L++ AD++ R+++Q + +L L R + +P
Sbjct: 604 KEADVEPELKGLMRSQ-------ADAD-----RQATQ-NTMLELLKRSNL-KPLSISLGL 649
Query: 305 XXXXXXASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMT 364
+ + + + V+IF+ G + ++ G+++ +F++T+ +++ G++ +
Sbjct: 650 MFFQQLSGINAVIFYTVQIFQDAGSTIDGNVCTIIVGVVNFMATFIATVLIDRAGRKILL 709
Query: 365 LWSTG--INTFFTLM-LSIC---AMNLQWPGWIPLTIFCTCFWVSGY--GMLPLPWMLLS 416
S I T F L C M+ GW+PL+ C ++ G+ G P+PW+++
Sbjct: 710 YVSNVAMILTLFVLGGFFYCKSTGMDTSNVGWLPLS--CFVVYILGFSLGFGPIPWLMMG 767
Query: 417 EVFPLQVRXXXXXXXXXXXXVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFY 476
E+ P ++R F+ TK++ ++ G HG +++ + F+G ++ FY
Sbjct: 768 EILPAKIRGSAASVATAFNWSCTFVVTKSFQDMIDVMGAHGAFWMFGAICFVGLFFVIFY 827
Query: 477 VPETEDRTLQEI 488
VPET+ +TL++I
Sbjct: 828 VPETQGKTLEDI 839
|
|
| UNIPROTKB|Q291H8 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] | Back alignment and assigned GO terms |
|---|
Score = 504 (182.5 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 111/418 (26%), Positives = 207/418 (49%)
Query: 79 LSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSII 138
++ + +SW+G I+ L G I G F+EY+GR+ ++ PF + +L+ A V+++
Sbjct: 445 VTPQAASWVGGIMPLAGLAGGIAGGPFIEYLGRRNTILATAIPFIVSSLLIACAVNVAMV 504
Query: 139 MLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTDWRT 198
+ G G VG + Y+GE +P +RG+L L A N G+ + F+ DW
Sbjct: 505 LAGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSM 564
Query: 199 TVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVK 258
+ A P+ +I++ IPE+P W VS+GR E+A ++L W+RG K+ V E + L++
Sbjct: 565 LAFLGAALPVPFLILMFLIPETPRWFVSRGREEKARKALSWLRG--KEADVEPELKGLMR 622
Query: 259 DTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPXXXXXXXXXXXXXASLQPMRP 318
AD++ Q K +L K N ++P + + +
Sbjct: 623 SQ-------ADADRQATQNKMMELLKRNN-------LKPLSISLGLMFFQQLSGINAVIF 668
Query: 319 FLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWST--GINTFFTL 376
+ V IF+ G + ++ GI++ +F++T+ +++ G++ + S I T F L
Sbjct: 669 YTVSIFKDAGSTIDGNLCTIIVGIVNFMATFIATLLIDRAGRKILLYVSNIAMIITLFVL 728
Query: 377 M-LSIC---AMNLQWPGWIPLTIFCTCFWVSGY--GMLPLPWMLLSEVFPLQVRXXXXXX 430
C ++ GW+PL+ C ++ G+ G P+PW+++ E+ P ++R
Sbjct: 729 GGFFYCKSHGQDVSQLGWLPLS--CFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASV 786
Query: 431 XXXXXXVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEI 488
F+ TKT+ ++ + G HG +++ + F+G ++ YVPET+ +TL++I
Sbjct: 787 ATAFNWSCTFVVTKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDI 844
|
|
| UNIPROTKB|B4GAP7 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila persimilis (taxid:7234)] | Back alignment and assigned GO terms |
|---|
Score = 504 (182.5 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 111/418 (26%), Positives = 207/418 (49%)
Query: 79 LSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSII 138
++ + +SW+G I+ L G I G F+EY+GR+ ++ PF + +L+ A V+++
Sbjct: 446 VTPQAASWVGGIMPLAGLAGGIAGGPFIEYLGRRNTILATAIPFIVSSLLIACAVNVAMV 505
Query: 139 MLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTDWRT 198
+ G G VG + Y+GE +P +RG+L L A N G+ + F+ DW
Sbjct: 506 LAGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSM 565
Query: 199 TVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVK 258
+ A P+ +I++ IPE+P W VS+GR E+A ++L W+RG K+ V E + L++
Sbjct: 566 LAFLGAALPVPFLILMFLIPETPRWFVSRGREEKARKALSWLRG--KEADVEPELKGLMR 623
Query: 259 DTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPXXXXXXXXXXXXXASLQPMRP 318
AD++ Q K +L K N ++P + + +
Sbjct: 624 SQ-------ADADRQATQNKMMELLKRNN-------LKPLSISLGLMFFQQLSGINAVIF 669
Query: 319 FLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWST--GINTFFTL 376
+ V IF+ G + ++ GI++ +F++T+ +++ G++ + S I T F L
Sbjct: 670 YTVSIFKDAGSTIDGNLCTIIVGIVNFMATFIATLLIDRAGRKILLYVSNIAMIITLFVL 729
Query: 377 M-LSIC---AMNLQWPGWIPLTIFCTCFWVSGY--GMLPLPWMLLSEVFPLQVRXXXXXX 430
C ++ GW+PL+ C ++ G+ G P+PW+++ E+ P ++R
Sbjct: 730 GGFFYCKSHGQDVSQLGWLPLS--CFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASV 787
Query: 431 XXXXXXVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEI 488
F+ TKT+ ++ + G HG +++ + F+G ++ YVPET+ +TL++I
Sbjct: 788 ATAFNWSCTFVVTKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDI 845
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9UGQ3 | GTR6_HUMAN | No assigned EC number | 0.2593 | 0.9064 | 0.9171 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 513 | |||
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 9e-46 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-45 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 2e-24 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 3e-14 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-12 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-12 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-09 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 1e-08 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 3e-08 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 6e-08 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-07 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 4e-07 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 2e-06 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 5e-06 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 1e-05 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 5e-05 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 2e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 7e-04 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 0.001 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 9e-46
Identities = 104/430 (24%), Positives = 198/430 (46%), Gaps = 36/430 (8%)
Query: 79 LSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAET---V 135
S + SI + G++ +G+ + GRK+ ++++ F +G IL+ LA V
Sbjct: 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSV 127
Query: 136 SIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT- 194
++++G V +G+ VG A + Y+ EI+ +RG+L+ A FG+ + + +
Sbjct: 128 EMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKV 187
Query: 195 ------DWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHK 248
WR + + I L + + F+PESP WLV KGR+EEA +SL +RG S + K
Sbjct: 188 SLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDK 247
Query: 249 VRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFIT 308
++ +L+ + S S + I R + ++L +
Sbjct: 248 ELLDELELID---------IKRSIEKRSVQPSWGSL---FSSTRRIRRRLFLGVVLQWFQ 295
Query: 309 IIASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITG---SFVSTITVNKLGKRGMTL 365
+ + + IF G + ++ +++ I+ +FV+ V++ G+R + L
Sbjct: 296 QFTGINAIMYYSPTIFENAG--VSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLL 353
Query: 366 WSTGINTFFTLMLSICAM-----NLQWPGWIPLTIFCTCFWVSGYGM--LPLPWMLLSEV 418
+L I + + G + I +++ + M P+PW+++SE+
Sbjct: 354 IGAAGMAICLFVLGILGASFVTGSSKSSGNVA--IVFILLFIAFFAMGWGPVPWVIVSEI 411
Query: 419 FPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVP 478
FPL +R I A++ + NFI + + G+ G + ++ LG I++YF++P
Sbjct: 412 FPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLP 471
Query: 479 ETEDRTLQEI 488
ET+ RTL+EI
Sbjct: 472 ETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 1e-45
Identities = 108/426 (25%), Positives = 194/426 (45%), Gaps = 33/426 (7%)
Query: 76 DLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETV 135
S S + SI + GS+ +G + GRK+ +++ F +G +L A+
Sbjct: 40 ACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGK 99
Query: 136 SIIML--GTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL 193
S ML G V +GL VG + YI EI+ ++RG+L FG+ + +I
Sbjct: 100 SFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLG 159
Query: 194 TD-------WRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKK 246
+ WR + + + IL +I + F+PESP WLV KG+LEEA L +RG S
Sbjct: 160 LNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVS-- 217
Query: 247 HKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVR-PEIVRPFIMIMILF 305
V E ++ E + +R L R + + +M ++L
Sbjct: 218 -DVDQEIQE---------------EKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQ 261
Query: 306 FITIIASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTL 365
+ + + + IF T GL S V ++ G+++ +F++ V++ G+R + L
Sbjct: 262 IFQQLTGINAIFYYSPTIFETLGLS-DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLL 320
Query: 366 WSTGINTFFTLMLSICAMNLQWPGWI-PLTIFCTCFWVSGYGM--LPLPWMLLSEVFPLQ 422
L+L + + + + I +++ + + P+PW+++SE+FPL
Sbjct: 321 LGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLG 380
Query: 423 VRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETED 482
VR A I A++ + NF+ + +T G ++ + L ++++F+VPET+
Sbjct: 381 VRPKAMAIATAANWLANFLIGFLFPIITGAIGG-YVFLVFAGLLVLFILFVFFFVPETKG 439
Query: 483 RTLQEI 488
RTL+EI
Sbjct: 440 RTLEEI 445
|
Length = 449 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 119/495 (24%), Positives = 218/495 (44%), Gaps = 101/495 (20%)
Query: 48 GMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLG---SILFLFHPFGSIISGY 104
G+ FG T V+ V S T+ +P + +S LG + + G + GY
Sbjct: 21 GLLFGYDTAVI---SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGY 77
Query: 105 FLEYIGRKRLMILVGFPFFLGWI----------------LLYLAETVSIIMLGTVCMGLS 148
GR+ + + FF+ + Y+ E V ++G + +GL+
Sbjct: 78 CSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLA 137
Query: 149 VGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLI-YALTD-----------W 196
P+ YI EI+ +RG L F A FG +++ + Y + W
Sbjct: 138 SMLS--PM--YIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW 193
Query: 197 RTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQL 256
R AI +L ++++ F+PE+P +L+S+G+ E+AE LR + G
Sbjct: 194 RYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMG-------------- 239
Query: 257 VKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILF-----FITIIA 311
AT + + +++ D + + KLL + V I+I ++ F+ I
Sbjct: 240 ---NTLATQALQEIKHSLDHGRKTG-GKLLMFGVG------VIVIGVMLSVFQQFVGINV 289
Query: 312 SLQPMRPFLVEIFRTFGLPMKSEWVL-VLTGILSITGSFVSTITVNKLGKR--------G 362
L + EIF+T G + ++ G++++T + ++ +TV+K G++ G
Sbjct: 290 VLY----YAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALG 345
Query: 363 MTLWSTGINT-FFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGML--PLPWMLLSEVF 419
M + + T F+T Q PG + L F+V+ + M P+ W+LLSE+F
Sbjct: 346 MAIGMFSLGTAFYT----------QAPGIVALL--SMLFYVAAFAMSWGPVCWVLLSEIF 393
Query: 420 PLQVRGIASGITAASSSVVNFISTKTY--INLTSWFGLHG----TLFIYTLVSFLGFIYI 473
P +RG A I A+ + N+ + T+ ++ SW H + +IY + L +++
Sbjct: 394 PNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM 453
Query: 474 YFYVPETEDRTLQEI 488
+ +VPET+ +TL+E+
Sbjct: 454 WKFVPETKGKTLEEM 468
|
Length = 479 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 3e-14
Identities = 73/374 (19%), Positives = 135/374 (36%), Gaps = 59/374 (15%)
Query: 76 DLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETV 135
DL +S + L + L + ++G + GR+R++++ F LG +LL A ++
Sbjct: 26 DLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSL 85
Query: 136 SIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGS----LSLFAGAACNFGVFIIFLIY 191
++++ V GL G + I + P RG LS G G + L+
Sbjct: 86 WLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLA 145
Query: 192 ALTDWRTTVLISAIFPILTMIMIA-FIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVR 250
+L WR LI AI +L ++ A +P P EEA L
Sbjct: 146 SLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLV------------ 193
Query: 251 VEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITII 310
L+R ++ ++++ +L F
Sbjct: 194 ---------------------------------PAWKLLLRDPVL--WLLLALLLFGFAF 218
Query: 311 ASLQPMRPFLVEIFRTFGL-PMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTG 369
+L P E GL + + +L L G+L G + ++LG+R L +
Sbjct: 219 FALLTYLPLYQE---VLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALL 275
Query: 370 INTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASG 429
+ L L++ ++ + + + P L+S++ P + RG ASG
Sbjct: 276 LLILAALGLALLSLTESSLWLLVALLLLGFGAG---LVFPALNALVSDLAPKEERGTASG 332
Query: 430 ITAASSSVVNFIST 443
+ + S+ +
Sbjct: 333 LYNTAGSLGGALGP 346
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-12
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 4/147 (2%)
Query: 76 DLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETV 135
DL LS Q+ + S L + GS+++GY + GR+R+++L F LG +LL A ++
Sbjct: 28 DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSL 87
Query: 136 SIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGV----FIIFLIY 191
++++G +GL G + I E P+ RG A G + L+
Sbjct: 88 WLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA 147
Query: 192 ALTDWRTTVLISAIFPILTMIMIAFIP 218
WR LI AI +L +++ F+
Sbjct: 148 ESLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 80/414 (19%), Positives = 161/414 (38%), Gaps = 76/414 (18%)
Query: 98 GSIISGYFLEYIGRKRLMIL---------------VGFPFFLGWILLYLAETVSIIMLGT 142
GS + GY + GRK++++L + FL + LL + I +
Sbjct: 143 GSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL---VGMGIGGIWV 199
Query: 143 VCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLI-YALTDWRTTVL 201
+ L+ E + R + + G+ ++ L+ Y + DWR L
Sbjct: 200 QAVVLNT------------EFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQL 247
Query: 202 ISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTN 261
++ L ++ F+PESP WL+S+GR+EEA + L+ + + K
Sbjct: 248 AVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKK-------------- 293
Query: 262 SATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLV 321
V D S + L+ P + + + +M+L+F T
Sbjct: 294 -LPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTT------------- 339
Query: 322 EIFRTFGLPMKSE-------WVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFF 374
F +GL + L ++G++ + ++ + +++LG+R S +
Sbjct: 340 -AFSYYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVA 398
Query: 375 TLMLSICAMNLQWPGWIPLTIFCTCFWVSG-YGMLPLPWMLLSEVFPLQVRGIASGITAA 433
L+L ++L + F ++ + M+ ++ +E++P VR + G+ +
Sbjct: 399 LLLLLFVPVDLYF--LRTALAVLGKFGITSAFQMV---YLYTAELYPTVVRNLGVGVCST 453
Query: 434 SSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQE 487
+ V + IS ++ L L ++ ++ L I F +PET+ L E
Sbjct: 454 MARVGSIIS--PFLVYLGEKWLFLPLVLFGGLALLAGILTLF-LPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 6e-09
Identities = 34/145 (23%), Positives = 72/145 (49%), Gaps = 5/145 (3%)
Query: 79 LSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFF-LGWILLYLAETVSI 137
LS ++ L S+ L G+++ G + +GR+RL++L+G LG +LL LA ++++
Sbjct: 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267
Query: 138 IMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL---- 193
+++ + +G +G +++ E++ P RG+ S + G + L+ L
Sbjct: 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT 327
Query: 194 TDWRTTVLISAIFPILTMIMIAFIP 218
+ LI A +L +++ +P
Sbjct: 328 GGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 1e-08
Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 32/220 (14%)
Query: 43 LLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIIS 102
L F LG+A V V V+ + S + DL + D LG I++L G+
Sbjct: 168 LFFVLGLALMADGVEVFVVGFVLPSAEK-----DLCIPDSGKGMLGLIVYLGMMVGAFFW 222
Query: 103 GYFLEYIGRKR-LMILVG----FPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPII 157
G + +GRK+ L+I + F FF ++ Y + + G +G +
Sbjct: 223 GGLADKLGRKQCLLICLSVNGFFAFFSSFVQGY-----GFFLFCRLLSGFGIGGAIPIVF 277
Query: 158 SYIGEISEPRMRGS----LSLF------AGAACNFGV-------FIIFLIYALTDWRTTV 200
SY E RG L +F AA + + F + Y WR V
Sbjct: 278 SYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFV 337
Query: 201 LISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWV 240
++ A + + + F+PESP + + G+ +EA L+ +
Sbjct: 338 IVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLI 377
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Query: 74 SPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAE 133
S + L Q +L S + FG++ G + IGR+R+++ F + +L LA
Sbjct: 44 SAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALAT 103
Query: 134 TVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSL--SLFAGAACNF--GVFIIFL 189
V+ +++ GL +G + + + E + R RG+ +F G G F+
Sbjct: 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGW 163
Query: 190 IYALTDWRTTVLISAIFPILTM-IMIAFIPESPTWLVSKG 228
+ + WR+ + I P+L + +++ F+PES +LVSK
Sbjct: 164 LIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR 203
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-08
Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
Query: 97 FGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPI 156
S +SG + GRK ++++ F F L + L+ ++++++ G
Sbjct: 13 IYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAG 72
Query: 157 ISYIGEISEPRMR----GSLSLFAGAACNFGVFIIFLIYALTDWRTTVLISAIFPILTMI 212
+ I +I P R G +S G + ++ WR L AI + I
Sbjct: 73 AALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFI 132
Query: 213 MIAFIPE 219
++AF+
Sbjct: 133 LLAFLLP 139
|
Length = 141 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 32/186 (17%), Positives = 67/186 (36%), Gaps = 8/186 (4%)
Query: 294 IVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGL--PMKSEWVLVLTGILSITGSFVS 351
++R +++ + FF+ + +L + ++ +L L G+ I G+ +
Sbjct: 173 LLRLLLLLALAFFLLSFGYYGLL-TYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLG 231
Query: 352 TITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLP 411
+ ++LG+R + L + L L + A+ + + P
Sbjct: 232 GLLSDRLGRRRLLLLIGLL--LAALGLLLLALAPSLALLLVALLLLG---FGLGFAFPAL 286
Query: 412 WMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFI 471
L SE+ P + RG ASG+ S+ + L G G I ++ L +
Sbjct: 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAAL 346
Query: 472 YIYFYV 477
+
Sbjct: 347 LLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 4e-07
Identities = 78/457 (17%), Positives = 146/457 (31%), Gaps = 88/457 (19%)
Query: 35 TASVAQNFLLFSLGM-AFGMPT---VVVGVLDHKVASNQTILESPDLILSDEQSSWLGSI 90
TA L +L + AF + T V VG+L +A+ DL +S+ + L +
Sbjct: 6 TARKPMWLALLALALAAFAIGTTEFVPVGLLP-PIAA--------DLGVSEGAAGQLITA 56
Query: 91 LFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVG 150
L G+ + + R+RL++ + F + +L LA + ++++L GL+ G
Sbjct: 57 YALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHG 116
Query: 151 CCEAPIISYIGEISEPRMRGS-LSLFAG---AACNFGVFIIFLIYALTDWRTTVLISAIF 206
+ + + P RG L+L A GV + + L WR T L A+
Sbjct: 117 VFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVL 176
Query: 207 PILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLY 266
+L ++++ L LR +
Sbjct: 177 ALLALLLLWK------LLPPSEISGSLPGPLRTLLRL----------------------- 207
Query: 267 VADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEI--F 324
L RP ++ + LF A +RPFL + F
Sbjct: 208 ----------------------LRRPGVLLGLLATF-LFMTGHFALYTYIRPFLESVAGF 244
Query: 325 RTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMN 384
+ VL+ GI G+ + ++ G R + + + L L+
Sbjct: 245 SVSAVS----LVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTF---- 295
Query: 385 LQWPGWIPLTIFCTCFWVSGYGMLPLP---WMLLSEVFPLQVRGIASGITAASSSVVNFI 441
L + W G+ P L+ + P +A + A+ ++ +
Sbjct: 296 --TGASPALALALLFLW--GFAFSPALQGLQTRLARLAP-DAADLAGSLNVAAFNLGIAL 350
Query: 442 STKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVP 478
+ G T ++ + L +
Sbjct: 351 GAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387
|
Length = 394 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 57/409 (13%), Positives = 129/409 (31%), Gaps = 99/409 (24%)
Query: 111 RKRLMILVGFPFFLGWILLY-----LAETVSIIMLGT--VCMGLSVGCCEAPIISYIGEI 163
+ +++ P + +LL+ L+ T +I + +GL+ P S I +
Sbjct: 69 FRPWLLIGAIPLAISLVLLFATPFGLSMTAKLIYAFITYILLGLAYTFVNIPYWSLIPVL 128
Query: 164 SE-PRMRGSLSLFAGAACNFGVFIIFLIY-----------ALTDWRTTVLISAIFPILTM 211
+ P+ R SL+ + G ++ +I + LI AI ++
Sbjct: 129 TRDPKERTSLASYRRIGATIGGLLVAVIAPPLVALLGGGNGAKGYFLAALIIAILAVVGF 188
Query: 212 IMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSE 271
++ + +K R+ +K +R F+ L K+
Sbjct: 189 LI--------CFAGTKERVSVPPEQ-------KEKVSLRDMFKALFKN------------ 221
Query: 272 YTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLP 330
RP +++++L+ + +A + L+ F G
Sbjct: 222 ------------------------RPLLILLLLYLLNALA-MAVRNGLLLYYFTYVLGNA 256
Query: 331 MKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGW 390
+L++ I +I G+ + + GK+ L + ++L L
Sbjct: 257 GLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFF----LPPGSL 312
Query: 391 IPLTIFCTCFWVSGYGMLPLPWMLLSEV---------------------FPLQV-RGIAS 428
+ + LPW +L++V F ++ +
Sbjct: 313 WLFLVLVVLAGIGLGLATLLPWAMLADVVDYGEWKTGKRREGITFSLYSFADKLGGALGG 372
Query: 429 GITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLV-SFLGFIYIYFY 476
I + +++ T + + G+ + V + L + + FY
Sbjct: 373 AIVGLLLAFAGYVANATAQSAAALSGIRLLFTLIPAVLALLALLILRFY 421
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 70/421 (16%), Positives = 139/421 (33%), Gaps = 66/421 (15%)
Query: 76 DLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRL--MILVGFPFFLGWILLYLAE 133
DL LS Q ++ S + G G+ L+ G ++ + +V + F G + +
Sbjct: 23 DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTG-LQAFAGA 81
Query: 134 TVSIIMLGTVCMGLSVGCCEAPIISYIGEISE----PRMRGSLS----LFAGAACNFGVF 185
VS+ +L + +G EAP I I R + G G
Sbjct: 82 YVSLYILRVL-----LGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGP 136
Query: 186 IIFLIYALTDWRTTVLISAIFPILTMIMIAFI-----PESPTWLVSKGRLEEAERSLRWV 240
++ I W+ +I + I+ ++ P+ WL + + L
Sbjct: 137 LVGWILIHFSWQWAFIIEGVLGII-WGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQ 195
Query: 241 RGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIM 300
+G + + ++L+KD L + L +
Sbjct: 196 QGKGPSTPKKYQIKELLKDRRVWGLALGQF-----------LVNIGLG------------ 232
Query: 301 IMILFFITIIASLQPMRPFLVEIFRTFGL-PMKSEWVLVLTGILSITGSFVSTITVNKLG 359
+ +F T + + GL +++ ++ L GI+ G + + L
Sbjct: 233 FFLTWFPTY-------------LVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLL 279
Query: 360 KRGMTL-WS--TGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLS 416
+RG +L ++ T I L L + A N + L + G G + W L+S
Sbjct: 280 RRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALV--ALGFFGLGAGAIGWALIS 337
Query: 417 EVFPLQVRGIASGITAASSSVVNFI--STKTYINLTSWFGLHGTLFIYTLVSFLGFIYIY 474
+ P + G+ G+ + ++ + I T+ + + L Y+
Sbjct: 338 DNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLL 397
Query: 475 F 475
Sbjct: 398 L 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 21/166 (12%)
Query: 336 VLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIP--- 392
++ L G ++ G +V+ V+ +G++ + L FF L + + +
Sbjct: 342 IIALAG--TVPGYWVTVFLVDIIGRKPIQLMG-----FFILTVLFFVLGFAYNHLSTHGF 394
Query: 393 LTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLT-- 450
L I+ + + +G +++ EVFP + R A GI+AAS I ++ L
Sbjct: 395 LAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH 454
Query: 451 --------SWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEI 488
+ + L I+ L FLG I +PET+ ++L+E+
Sbjct: 455 GDPTKGYPTGIWMGHVLEIFALFMFLG-ILFTLLIPETKGKSLEEL 499
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 5e-05
Identities = 70/357 (19%), Positives = 125/357 (35%), Gaps = 43/357 (12%)
Query: 83 QSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGT 142
++ L S + FG+++ G + + GR+ M+ F G + A + +
Sbjct: 48 DAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIAR 107
Query: 143 VCMGLSVGCCEAPIISYIGEISEPRMRGSLS--LFAGAACNFGVFIIF---LIYALTD-W 196
+ +G+ +G +Y+ E +R S L +G A V ++ D W
Sbjct: 108 LVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGW 167
Query: 197 RTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQL 256
R IS + I + + IPE+ W +KH + +
Sbjct: 168 RALFFISILPIIFALWLRKNIPEA--------------------EDWKEKHAGKALVRTM 207
Query: 257 VKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPM 316
V +A+ T K V ++++++LF +Q +
Sbjct: 208 VDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFV-------YLVVLVLFANLYSHPIQDL 260
Query: 317 RPFLVEIFRTFGL-PMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFT 375
P ++ GL P ++V + I +I G V + LG+R + S
Sbjct: 261 LPTYLKA--DLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLI 318
Query: 376 LMLSICAMNLQWPGWIPLTIFCTCFWVSG-YGMLPLPWMLLSEVFPLQVRGIASGIT 431
+ + N+ G L +F V G +G+LP L E FP R G T
Sbjct: 319 IPVFAIGANVAVLG---LGLFFQQMLVQGIWGILP---KHLGEYFPTDQRAAGLGFT 369
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 5/169 (2%)
Query: 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAET 134
+ L Q W S L G+++ G + IGRKR++I+ F L + A
Sbjct: 43 QEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWD 102
Query: 135 VSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL- 193
+++ + G+ +G +I+ E PR+RG+ FG + +I L
Sbjct: 103 FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA 162
Query: 194 ---TDWRTTVLISAIFPILTM-IMIAFIPESPTWLVSKGRLEEAERSLR 238
WR + + P+L + +++ ++PES + + G ++ LR
Sbjct: 163 AGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLR 211
|
Length = 406 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 28/181 (15%), Positives = 62/181 (34%), Gaps = 7/181 (3%)
Query: 299 IMIMILFFITIIASLQPMRPFLVEIFRTFGL-PMKSEWVLVLTGILSITGSFVSTITVNK 357
++++ L F + P L + GL ++ ++ + GS ++ ++
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 358 LGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSE 417
G+R + L + +L + A + + P L++E
Sbjct: 61 FGRRRVLLLGLLLFALGSL---LLAFASSLWLLLVGRFLLGLGGG---ALYPAAAALIAE 114
Query: 418 VFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYV 477
FP + RG A G+ +A + + L G I ++ L + + F +
Sbjct: 115 WFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
Query: 478 P 478
Sbjct: 175 R 175
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.001
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 10/159 (6%)
Query: 76 DLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETV 135
DL L+D + ++L + F+ PFG + G + GRK LM+ + +G L LA V
Sbjct: 47 DLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGV 106
Query: 136 SIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTD 195
++ L +G+ + A +Y E ++ S F FG+ I Y +
Sbjct: 107 IMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAF--LVSGFGIGNIIAAYFMPS 164
Query: 196 ------WRTTVLISAIFPILTMIMI-AFIPESPTWLVSK 227
WR + + P+L +I I A PES W +K
Sbjct: 165 FAEAYGWRAAFFV-GLLPVLLVIYIRARAPESKEWEEAK 202
|
Length = 426 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 513 | |||
| KOG0569|consensus | 485 | 100.0 | ||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| KOG0254|consensus | 513 | 100.0 | ||
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| KOG0253|consensus | 528 | 100.0 | ||
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| KOG0252|consensus | 538 | 100.0 | ||
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| KOG0255|consensus | 521 | 100.0 | ||
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| KOG1330|consensus | 493 | 100.0 | ||
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| KOG2532|consensus | 466 | 100.0 | ||
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.98 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.98 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.98 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.98 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.98 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.98 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.97 | |
| KOG2533|consensus | 495 | 99.97 | ||
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.97 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.96 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.96 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| KOG2504|consensus | 509 | 99.96 | ||
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.96 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.95 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.95 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.95 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.94 | |
| KOG3764|consensus | 464 | 99.94 | ||
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.94 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.94 | |
| KOG2615|consensus | 451 | 99.94 | ||
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.94 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.94 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.94 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.91 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.9 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.9 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.89 | |
| KOG4686|consensus | 459 | 99.89 | ||
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.89 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.88 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.87 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.87 | |
| KOG2563|consensus | 480 | 99.87 | ||
| PRK11462 | 460 | putative transporter; Provisional | 99.86 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.86 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.86 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.86 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.84 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.82 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.79 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.78 | |
| KOG3626|consensus | 735 | 99.73 | ||
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.73 | |
| KOG2325|consensus | 488 | 99.72 | ||
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.68 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.66 | |
| KOG2816|consensus | 463 | 99.61 | ||
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.56 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.51 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.51 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.5 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.5 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.49 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.48 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.48 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.48 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.47 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.47 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.47 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.47 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.44 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.44 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.44 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.44 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.43 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.41 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.41 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.41 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.41 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.41 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.4 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.4 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.39 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.39 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.39 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.39 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.39 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.39 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.38 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.37 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.36 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.35 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.35 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.35 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.34 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.34 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.33 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.33 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.33 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.33 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.33 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.33 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.32 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.31 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.31 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.31 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.31 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.3 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.29 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.29 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.29 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.28 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.28 | |
| KOG3098|consensus | 461 | 99.28 | ||
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.28 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.27 | |
| KOG3762|consensus | 618 | 99.27 | ||
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.27 | |
| KOG1330|consensus | 493 | 99.27 | ||
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.26 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.26 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.25 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.24 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.21 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.21 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.2 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.18 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.17 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.17 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.16 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.16 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.15 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.14 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.14 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.13 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.12 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.11 | |
| KOG0637|consensus | 498 | 99.08 | ||
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.08 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.08 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.07 | |
| KOG0569|consensus | 485 | 99.06 | ||
| KOG3764|consensus | 464 | 99.05 | ||
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.04 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.03 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.03 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.03 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.03 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.0 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.0 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.99 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.98 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.98 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.97 | |
| KOG2532|consensus | 466 | 98.97 | ||
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.97 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.96 | |
| KOG2615|consensus | 451 | 98.96 | ||
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.94 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.92 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.9 | |
| KOG0253|consensus | 528 | 98.89 | ||
| KOG2533|consensus | 495 | 98.88 | ||
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.87 | |
| KOG4332|consensus | 454 | 98.87 | ||
| KOG2504|consensus | 509 | 98.86 | ||
| KOG3810|consensus | 433 | 98.85 | ||
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.84 | |
| KOG0255|consensus | 521 | 98.81 | ||
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.81 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.8 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.78 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.78 | |
| KOG3574|consensus | 510 | 98.78 | ||
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.77 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.73 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.68 | |
| KOG4686|consensus | 459 | 98.68 | ||
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.65 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.65 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.65 | |
| KOG0254|consensus | 513 | 98.59 | ||
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.58 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.58 | |
| KOG2325|consensus | 488 | 98.52 | ||
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.43 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.43 | |
| KOG2816|consensus | 463 | 98.42 | ||
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.39 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.39 | |
| KOG3762|consensus | 618 | 98.37 | ||
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.36 | |
| KOG0252|consensus | 538 | 98.36 | ||
| KOG1237|consensus | 571 | 98.33 | ||
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.31 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.21 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.07 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.03 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.0 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.96 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.96 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.94 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.81 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.66 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.61 | |
| KOG2563|consensus | 480 | 97.55 | ||
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.41 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.41 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.39 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.38 | |
| KOG1479|consensus | 406 | 97.18 | ||
| KOG3626|consensus | 735 | 97.04 | ||
| KOG3880|consensus | 409 | 97.0 | ||
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.85 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.82 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.76 | |
| KOG3098|consensus | 461 | 96.75 | ||
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.7 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.64 | |
| KOG0637|consensus | 498 | 96.58 | ||
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.13 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 96.03 | |
| KOG3097|consensus | 390 | 95.81 | ||
| PRK03612 | 521 | spermidine synthase; Provisional | 95.35 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 95.02 | |
| KOG2601|consensus | 503 | 94.51 | ||
| KOG1479|consensus | 406 | 94.38 | ||
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 94.02 | |
| KOG1237|consensus | 571 | 92.38 | ||
| KOG4332|consensus | 454 | 92.06 | ||
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 91.83 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 87.94 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 84.51 | |
| KOG3574|consensus | 510 | 83.85 | ||
| KOG3880|consensus | 409 | 82.39 |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=332.56 Aligned_cols=448 Identities=24% Similarity=0.412 Sum_probs=366.0
Q ss_pred hhHHHHHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhh----HHHHHHHHhhhhhhhHHHHHHh
Q psy8366 30 ACSQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQ----SSWLGSILFLFHPFGSIISGYF 105 (513)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~----~~~~~s~~~l~~~i~~~~~g~l 105 (513)
..+.........++.+-.|+..+..++..+.+.+- .|++...+.+..+++++ .+.+.+++.+|.++|+++.|++
T Consensus 6 t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f--~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~l 83 (485)
T KOG0569|consen 6 TRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSF--INETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLL 83 (485)
T ss_pred cHHHHHHHHHHHHhchhhhhhheecCchHHHHHHH--HHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666788888888888776666532 12222222222345543 5778999999999999999999
Q ss_pred hhhcchhhHHHHHhHHHHHHHHHHHh---chhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHH
Q psy8366 106 LEYIGRKRLMILVGFPFFLGWILLYL---AETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNF 182 (513)
Q Consensus 106 ~dr~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 182 (513)
+||+|||..+.++.++..++.++..+ .++++.++++|++.|+..|.......-++.|..|++.||....+.+.+..+
T Consensus 84 a~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~ 163 (485)
T KOG0569|consen 84 ADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVI 163 (485)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHH
Confidence 99999999999999988888877765 468999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh------hHhHHHHHHhhhHHHHHHHHHHHhccCchhhhhh-cCChHHHHHHHHHhhCCCchhhHHHHHHH
Q psy8366 183 GVFIIFLIYA------LTDWRTTVLISAIFPILTMIMIAFIPESPTWLVS-KGRLEEAERSLRWVRGWSKKHKVRVEFEQ 255 (513)
Q Consensus 183 G~~~~~~l~~------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (513)
|.+++..++. .-.|++.+.+..+++++..+...++||||||+.. |++.++|++.++.+++..+++...++..+
T Consensus 164 g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~ 243 (485)
T KOG0569|consen 164 GILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLR 243 (485)
T ss_pred HHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence 9999966643 2379999999999999999999999999999988 89999999999999987664444333322
Q ss_pred HHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-H
Q psy8366 256 LVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-E 334 (513)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~ 334 (513)
..+.. +.+++...++++.+.++..+++..+.+.+....++.+.+.+..|...++++.|++.+. .
T Consensus 244 e~~~~---------------~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~ 308 (485)
T KOG0569|consen 244 EIEEE---------------ELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQ 308 (485)
T ss_pred HHHHh---------------ccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHH
Confidence 22111 1111123343566667778888888899999999999999999999999999999887 6
Q ss_pred HHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCC-ch---hhHHHHHHHHHHHhccccch
Q psy8366 335 WVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWP-GW---IPLTIFCTCFWVSGYGMLPL 410 (513)
Q Consensus 335 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~ 410 (513)
+.....++..++.++++.++.||.|||++++.+..++.+..+++.......+.. .| ..+...+.....++.|..|+
T Consensus 309 ~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi 388 (485)
T KOG0569|consen 309 YANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPI 388 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCch
Confidence 788889999999999999999999999999999999988877777655432222 22 33566667777788889999
Q ss_pred hhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeEEcccCCCCCHHHHHH
Q psy8366 411 PWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEILD 490 (513)
Q Consensus 411 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (513)
.+-+.+|++|++.|..+.++...+..+.+++....+..+.+..|. ..|+++.+.+.+..+..++++||+|+|+..|+.+
T Consensus 389 ~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~ 467 (485)
T KOG0569|consen 389 PWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIE 467 (485)
T ss_pred hHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999996 7888899999999999999999999999999988
Q ss_pred HHhcc
Q psy8366 491 FFAEN 495 (513)
Q Consensus 491 ~~~~~ 495 (513)
+.+++
T Consensus 468 ~~~~~ 472 (485)
T KOG0569|consen 468 ELEKR 472 (485)
T ss_pred HHHhC
Confidence 87766
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=348.60 Aligned_cols=432 Identities=16% Similarity=0.218 Sum_probs=324.6
Q ss_pred hHHHHHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcc
Q psy8366 31 CSQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIG 110 (513)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G 110 (513)
+.+|...++..+..+..+++....+.++|.+. ++++++..+.+++.++++++.+++++++|+++||+|
T Consensus 163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~------------~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~G 230 (742)
T TIGR01299 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAE------------KDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLG 230 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45566666667777788888888889999998 899999999999999999999999999999999999
Q ss_pred hhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHH
Q psy8366 111 RKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLI 190 (513)
Q Consensus 111 rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l 190 (513)
||+++++++++.++++++++++++++.++++|+++|++.|+..+...++++|++|+++|++..++..+++.+|.++++.+
T Consensus 231 RR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~l 310 (742)
T TIGR01299 231 RKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAM 310 (742)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888765
Q ss_pred hhh-----------------HhHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhh---H-
Q psy8366 191 YAL-----------------TDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHK---V- 249 (513)
Q Consensus 191 ~~~-----------------~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~- 249 (513)
+.. .+||+.+++.+++.++.+++.+++||||+|+..+++.+++.+.++++.+.+.... .
T Consensus 311 a~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~ 390 (742)
T TIGR01299 311 AWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEK 390 (742)
T ss_pred HHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhH
Confidence 422 2699999998888887777888899999999999999999999999877654211 1
Q ss_pred HHHHHHHHHhhccccccccccccc-------hhh-cc-hhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhH
Q psy8366 250 RVEFEQLVKDTNSATLYVADSEYT-------TDQ-RK-SSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFL 320 (513)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (513)
......+................. ... .. ..-+.+ +..+++++++++.++.+.+++...+ +++.+..|+
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lf~~~~~~~tl~l~~~wf~~~~-~yygl~~w~ 468 (742)
T TIGR01299 391 VFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGN-FLRCFNPEVREITIKLMGVWFTLSF-GYYGLSVWF 468 (742)
T ss_pred HHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHH-HHHHcCccHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 111111111000000000000000 000 00 001123 4557788888888877777766555 477888898
Q ss_pred HHHHHhc------------------------------------------CCC----------------------------
Q psy8366 321 VEIFRTF------------------------------------------GLP---------------------------- 330 (513)
Q Consensus 321 ~~~~~~~------------------------------------------g~~---------------------------- 330 (513)
|.+++.. |+.
T Consensus 469 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (742)
T TIGR01299 469 PDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKN 548 (742)
T ss_pred HHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhc
Confidence 8775331 000
Q ss_pred -----------------------------------------c----h-hHHHHHHHHHHHHHhhhHHHHhhcccCCchHH
Q psy8366 331 -----------------------------------------M----K-SEWVLVLTGILSITGSFVSTITVNKLGKRGMT 364 (513)
Q Consensus 331 -----------------------------------------~----~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 364 (513)
. . ......+.+++.+++.++.|+++||+|||+++
T Consensus 549 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l 628 (742)
T TIGR01299 549 CTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRML 628 (742)
T ss_pred cchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 0 0 02335566788999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHH
Q psy8366 365 LWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTK 444 (513)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 444 (513)
.++.++.+++++++.+.. +....+++.++.+++. .+..+..+++++|++|++.|++++|+.+....+|++++|.
T Consensus 629 ~~~~~lsai~~ll~~~~~-----s~~~ll~~~~l~g~~~-~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~ 702 (742)
T TIGR01299 629 AGSMVLSCISCFFLSFGN-----SESAMIALLCLFGGLS-IAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGIL 702 (742)
T ss_pred HHHHHHHHHHHHHHHHHc-----cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888877766543 2333333333333333 3455677789999999999999999999999999999999
Q ss_pred HhhhhhhccchhHHHHHHHHHHHHHHhheeEEcccCCCCC
Q psy8366 445 TYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRT 484 (513)
Q Consensus 445 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (513)
+.+.+.+. +...++++++++.++++++.+ ++||++++.
T Consensus 703 i~g~L~~~-~~~~pf~i~a~~lll~~ll~~-~LPET~~~~ 740 (742)
T TIGR01299 703 IFGSFVGI-TKAAPILFASAALACGGLLAL-KLPDTRGQV 740 (742)
T ss_pred HHHHHHHh-hhHHHHHHHHHHHHHHHHHHH-hCCCCcccc
Confidence 99988774 456677777777777666554 458877654
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=328.79 Aligned_cols=434 Identities=21% Similarity=0.341 Sum_probs=315.0
Q ss_pred HHHHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchh
Q psy8366 33 QFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRK 112 (513)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr 112 (513)
.....+...+..+.++++....++..|.+.+....... .+++.+..+.+++.+++.++..++++++|+++||+|||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr 85 (479)
T PRK10077 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQN----LSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (479)
T ss_pred HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhccccc----ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 34445555677889999999999999988743222111 45699999999999999999999999999999999999
Q ss_pred hHHHHHhHHHHHHHHHHHhc------------hhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHH
Q psy8366 113 RLMILVGFPFFLGWILLYLA------------ETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAAC 180 (513)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 180 (513)
++++++.++++++.++++++ ++++.++++|+++|++.|...+...++++|++|+++|++++++.+.+.
T Consensus 86 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~ 165 (479)
T PRK10077 86 DSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI 165 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHH
Confidence 99999999999998888763 235678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh------------hHhHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhh
Q psy8366 181 NFGVFIIFLIYA------------LTDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHK 248 (513)
Q Consensus 181 ~lG~~~~~~l~~------------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (513)
.+|.++++.++. ..+||+.|++.+++.++..+..+++||+|+++..+++.+++++..++..+..+.+.
T Consensus 166 ~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 245 (479)
T PRK10077 166 IFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQ 245 (479)
T ss_pred HHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHH
Confidence 999988776643 23899999999888877776777899999988777777776665555543322111
Q ss_pred HHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcC
Q psy8366 249 VRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFG 328 (513)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 328 (513)
..++..+.. .++..+ ....+.. .............+....+.+...+|.|.+.++.|
T Consensus 246 ---~~~~~~~~~------------~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g 302 (479)
T PRK10077 246 ---ALQEIKHSL------------DHGRKT-------GGKLLMF-GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLG 302 (479)
T ss_pred ---HHHHHHHHH------------HHhhhh-------hhhhcch-hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcC
Confidence 111111000 000000 0000000 00111111222233334445555677788888888
Q ss_pred CCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccc
Q psy8366 329 LPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGM 407 (513)
Q Consensus 329 ~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (513)
.+... .......++..+++.++.++++||+|||+.+..+..+.+++.+++...... ............+...+.....
T Consensus 303 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 381 (479)
T PRK10077 303 ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-QAPGIVALLSMLFYVAAFAMSW 381 (479)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhccc
Confidence 87665 566667888899999999999999999999999988888877766544311 1112222223333333343344
Q ss_pred cchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhh------hccchhHHHHHHHHHHHHHHhheeEEcccCC
Q psy8366 408 LPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLT------SWFGLHGTLFIYTLVSFLGFIYIYFYVPETE 481 (513)
Q Consensus 408 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (513)
.+..+.+++|.+|+++|+++.|+.+...++++++++.+.+.+. +..++...+++.+++++++.++.+++.+|++
T Consensus 382 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 382 GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred cchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 5777899999999999999999999999999999977776444 5667777888888887777777777788999
Q ss_pred CCCHHHHHHHHhc
Q psy8366 482 DRTLQEILDFFAE 494 (513)
Q Consensus 482 ~~~~~~~~~~~~~ 494 (513)
+++.+|.++..++
T Consensus 462 ~~~~~~~~~~~~~ 474 (479)
T PRK10077 462 GKTLEEMEALWEP 474 (479)
T ss_pred CCCHHHHHHHHhh
Confidence 8888877666543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=332.92 Aligned_cols=432 Identities=18% Similarity=0.236 Sum_probs=304.1
Q ss_pred hHHHHHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcc
Q psy8366 31 CSQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIG 110 (513)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G 110 (513)
+.++.....+.+..+.++++....+.+.|.+..+.. ..+.+.++.+.+++.+.+.++..++++++|+++||+|
T Consensus 12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~G 84 (502)
T TIGR00887 12 WQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYY-------HGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLG 84 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455666667778889999999999999888763210 0134566778899999999999999999999999999
Q ss_pred hhhHHHHHhHHHHHHHHHHHhchh------HHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHH
Q psy8366 111 RKRLMILVGFPFFLGWILLYLAET------VSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGV 184 (513)
Q Consensus 111 rr~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 184 (513)
||+++.++.++..++.++++++++ ++.++++|+++|++.|...+....+++|++|+++|+++.++......+|.
T Consensus 85 rr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~ 164 (502)
T TIGR00887 85 RKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGI 164 (502)
T ss_pred cHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999998876 78999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhh---------------------------HhHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChH-HHHHH
Q psy8366 185 FIIFLIYAL---------------------------TDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLE-EAERS 236 (513)
Q Consensus 185 ~~~~~l~~~---------------------------~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~-~~~~~ 236 (513)
++++.++.. .+||++|.+.++++++..+..+++||||+|+..+++.+ ++++.
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~ 244 (502)
T TIGR00887 165 LAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASD 244 (502)
T ss_pred HHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHH
Confidence 887766431 26999999998888887778888999999998877764 45555
Q ss_pred HHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhch
Q psy8366 237 LRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPM 316 (513)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (513)
+.+..+.+.++. .++.++.. ++++....++.+.++...+++.++..+.....++. ....++..
T Consensus 245 ~~~~~~~~~~~~-~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~ 307 (502)
T TIGR00887 245 MSAVLQVKIEAE-PDEVEKAS---------------TAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFL-LDIAFYGV 307 (502)
T ss_pred HHHHhccccccC-cccccchh---------------ccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHcc
Confidence 554433211110 00000000 00000001122212211112222222222222222 22234455
Q ss_pred hhhHHHHHHhcCCCchh-H------------HHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHH
Q psy8366 317 RPFLVEIFRTFGLPMKS-E------------WVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAM 383 (513)
Q Consensus 317 ~~~~~~~~~~~g~~~~~-~------------~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 383 (513)
..|.|.++++.|++... + ....+..++.+++.++.++++||+|||+.+..+..+.+++..++.....
T Consensus 308 ~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~ 387 (502)
T TIGR00887 308 NLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN 387 (502)
T ss_pred ccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888887776432 1 1233445567778899999999999999988887777776655554321
Q ss_pred hcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhc----------c
Q psy8366 384 NLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSW----------F 453 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~----------~ 453 (513)
.. ................+.+..+..+.+..|.+|++.|+++.|+.+.+.+++++++|.+.+.+.+. .
T Consensus 388 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 465 (502)
T TIGR00887 388 HL--STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGI 465 (502)
T ss_pred hc--chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccc
Confidence 10 11111222222223334456677788899999999999999999999999999999999999884 3
Q ss_pred chhHHHHHHHHHHHHHHhheeEEcccCCCCCHHHHH
Q psy8366 454 GLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEIL 489 (513)
Q Consensus 454 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (513)
++...+.+++++++++.++. ++.||+++++++|++
T Consensus 466 ~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei~ 500 (502)
T TIGR00887 466 WMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELS 500 (502)
T ss_pred cchHHHHHHHHHHHHHHHHh-eEeccCCCCCHHhhh
Confidence 44567788888887776654 567999999887654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=318.36 Aligned_cols=447 Identities=26% Similarity=0.469 Sum_probs=353.0
Q ss_pred hHHHHHHHHHHHHHhhhccc--ccccchhhhhhcccccccccccCCCCcccch--hhHHHHHHHHhhhhhhhHHHHHHhh
Q psy8366 31 CSQFTASVAQNFLLFSLGMA--FGMPTVVVGVLDHKVASNQTILESPDLILSD--EQSSWLGSILFLFHPFGSIISGYFL 106 (513)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~--~~~~~~~s~~~l~~~i~~~~~g~l~ 106 (513)
..............+..|.+ .+..+++.+.+...... .+...+. .+.+|+.+.+.++..++++++|+++
T Consensus 41 ~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~-------~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~ 113 (513)
T KOG0254|consen 41 PFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASL-------YDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLG 113 (513)
T ss_pred eehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccc-------cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666665 66777777777632100 1222222 4669999999999999999999999
Q ss_pred hhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHH
Q psy8366 107 EYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFI 186 (513)
Q Consensus 107 dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~ 186 (513)
|++|||+.++++.+++.+|.+++++++|+++++++|+++|+|.|......+.+++|..|++.||...+..+....+|.++
T Consensus 114 d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~ 193 (513)
T KOG0254|consen 114 DRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILL 193 (513)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhH-----hHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhc
Q psy8366 187 IFLIYALT-----DWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTN 261 (513)
Q Consensus 187 ~~~l~~~~-----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (513)
+..++... +||..+.+..+++++..+..+++||+|+|+.++++.+++++.+.++++.. +.+...+.+.+.....
T Consensus 194 ~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~-~~~~~~~~~~~~~~~~ 272 (513)
T KOG0254|consen 194 GYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLS-PEDVEVELELLKIKLL 272 (513)
T ss_pred HHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCC-CcchHHHHHHHHHHHH
Confidence 97777666 69999999999999888888889999999999999999999999998854 2222222222221000
Q ss_pred cccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchhHHHHHHHH
Q psy8366 262 SATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKSEWVLVLTG 341 (513)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 341 (513)
. .....+.+. .+..++++..+++..+...+..+.++++.+...+|.+.+++..|.+.+......+.+
T Consensus 273 ~------~~~~~~~~~-------~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~ 339 (513)
T KOG0254|consen 273 V------EAEVAEGKA-------SWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILG 339 (513)
T ss_pred H------hhhcccccc-------cHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHH
Confidence 0 000000000 144555566778888889999999999999999999999998887755455566778
Q ss_pred HHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcC-------CCchhhHHHHHHHHHHHhccccchhhhh
Q psy8366 342 ILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQ-------WPGWIPLTIFCTCFWVSGYGMLPLPWML 414 (513)
Q Consensus 342 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (513)
+..+++..++..+.||+|||+.++.+...+.++.+++........ ...+..+...++....+..+..++.+.+
T Consensus 340 ~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~ 419 (513)
T KOG0254|consen 340 VVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVI 419 (513)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhh
Confidence 888888888899999999999999999999999888887654321 1245556666677777778889999999
Q ss_pred hccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHh-heeEEcccCCCCCHHHHHHHHh
Q psy8366 415 LSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFI-YIYFYVPETEDRTLQEILDFFA 493 (513)
Q Consensus 415 ~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 493 (513)
.+|.+|.+.|+.+.++...+..+.+.+-...+..+.+..+....|..+++.+.+... +.+++.||+++++.+++++...
T Consensus 420 ~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~ 499 (513)
T KOG0254|consen 420 VSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFE 499 (513)
T ss_pred hhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHH
Confidence 999999999999999999999999888877777776665544566777777777666 7888999999999999988776
Q ss_pred ccccc
Q psy8366 494 ENKSA 498 (513)
Q Consensus 494 ~~~~~ 498 (513)
+....
T Consensus 500 ~~~~~ 504 (513)
T KOG0254|consen 500 EGIKP 504 (513)
T ss_pred cCCch
Confidence 65443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=323.00 Aligned_cols=439 Identities=24% Similarity=0.414 Sum_probs=316.1
Q ss_pred hhHHHHHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhc
Q psy8366 30 ACSQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYI 109 (513)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~ 109 (513)
.++.+....+..+..+..+++.....+.+|.+..+...+.. .+-+.+..+.+++.+++.++..++++++|+++||+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~ 98 (481)
T TIGR00879 23 YWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSA----NSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF 98 (481)
T ss_pred cHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCc----ccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh
Confidence 34445555555666677788888888888888732110000 11224589999999999999999999999999999
Q ss_pred chhhHHHHHhHHHHHHHHHHHhc---hhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHH
Q psy8366 110 GRKRLMILVGFPFFLGWILLYLA---ETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFI 186 (513)
Q Consensus 110 Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~ 186 (513)
|||++++++.+++.++.+++.+. .+++.++++|+++|++.+...+...+++.|++|+++|+++.++.+.+..+|.++
T Consensus 99 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 178 (481)
T TIGR00879 99 GRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILV 178 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999554 345689999999999999999999999999999999999999999999999999
Q ss_pred HHHHh---h----hHhHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHH-HHHHHHHH
Q psy8366 187 IFLIY---A----LTDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVR-VEFEQLVK 258 (513)
Q Consensus 187 ~~~l~---~----~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 258 (513)
++.++ . ..+||+.|++.++..++..+..+++||+|++...+++.++..+..++.....+..... ........
T Consensus 179 ~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (481)
T TIGR00879 179 AYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDI 258 (481)
T ss_pred HHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 99988 3 3499999999777777666677788999988766666665555544443322211111 11110000
Q ss_pred hhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHH
Q psy8366 259 DTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVL 337 (513)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~ 337 (513)
.. . .+.+.....+.. .....++ ..++.++...+..+...........+.|.++++.|++... +...
T Consensus 259 ~~----------~-~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 325 (481)
T TIGR00879 259 KR----------S-IEKRSVQPSWGS-LFSSTRR-IRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVS 325 (481)
T ss_pred HH----------H-HHHhhccccHHH-HHhcCch-hHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHH
Confidence 00 0 000000001122 1111122 2344455555555555555666778888888888888765 6777
Q ss_pred HHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCC-----chhhHHHHHHHHHHHhccccchhh
Q psy8366 338 VLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWP-----GWIPLTIFCTCFWVSGYGMLPLPW 412 (513)
Q Consensus 338 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 412 (513)
.+..++.+++.++.++++||++||+.+..+..+.+++.+.+.......... .+..+....+...+.+.+..+...
T Consensus 326 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (481)
T TIGR00879 326 IIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPW 405 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeeh
Confidence 788899999999999999999999999888777777766665322111111 233333444444455455667777
Q ss_pred hhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeEEcccCCCCCH
Q psy8366 413 MLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTL 485 (513)
Q Consensus 413 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (513)
.+..|.+|++.|+++.|+.+...++|++++|.+.+.+.+..|+...|++.+++++++.++.+++.+|+++++.
T Consensus 406 ~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 406 VIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred hhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence 7889999999999999999999999999999999999999899988999888888888777777777766544
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=283.00 Aligned_cols=363 Identities=16% Similarity=0.230 Sum_probs=278.3
Q ss_pred HHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHH
Q psy8366 37 SVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMI 116 (513)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~ 116 (513)
.+...+..|..+.....+..++|++. +|+|+|..+.|++.|+|.++.+++.|+...+.||+.||++++
T Consensus 15 l~aLa~~~F~igttEfv~~gLLp~iA------------~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl 82 (394)
T COG2814 15 LLALALAAFAIGTTEFVPVGLLPPIA------------ADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLL 82 (394)
T ss_pred HHHHHHHHHHHHhHHHHHHhchHHHH------------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 33445567777888889999999999 999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHH----HHhh
Q psy8366 117 LVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIF----LIYA 192 (513)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~----~l~~ 192 (513)
..+.++.++++++++++||+.++++|++.|+..|..++...++..+..|+++|++++++...+..++.++|. .+++
T Consensus 83 ~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~ 162 (394)
T COG2814 83 GLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ 162 (394)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887766654 4556
Q ss_pred hHhHHHHHHhhhHHHHHHHH-HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccc
Q psy8366 193 LTDWRTTVLISAIFPILTMI-MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSE 271 (513)
Q Consensus 193 ~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (513)
.+|||+.|++.+.++++.++ .+..+| |+... +.+..+
T Consensus 163 ~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~-~~~~~~--------------------------------------- 200 (394)
T COG2814 163 LFGWRATFLAIAVLALLALLLLWKLLP--PSEIS-GSLPGP--------------------------------------- 200 (394)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCC-CCCCcc---------------------------------------
Confidence 66999999999999998888 456678 21000 000000
Q ss_pred cchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhhh
Q psy8366 272 YTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGSF 349 (513)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~ 349 (513)
..+.++.+++++.... +....+. +.+.+...+|...+++ ..|++... ++.+..++++.++|+.
T Consensus 201 ----------~~~~~~~l~~p~v~~~-l~~t~l~----~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~ 265 (394)
T COG2814 201 ----------LRTLLRLLRRPGVLLG-LLATFLF----MTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNL 265 (394)
T ss_pred ----------hhHHHHHhcCchHHHH-HHHHHHH----HcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHH
Confidence 1111444444443322 2222222 2334444456555554 68888876 8999999999999999
Q ss_pred HHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHH
Q psy8366 350 VSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASG 429 (513)
Q Consensus 350 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 429 (513)
++|++.|| +.|+.+.....+..+..+.+.+.. .+.+..+....+.++.. ............+.. ++.++.+.+
T Consensus 266 ~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~----~~~~~~~~~~~~wg~a~-~~~~~~~~~~~a~~~-p~~~~~a~s 338 (394)
T COG2814 266 LGGRLADR-GPRRALIAALLLLALALLALTFTG----ASPALALALLFLWGFAF-SPALQGLQTRLARLA-PDAADLAGS 338 (394)
T ss_pred HHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc----chHHHHHHHHHHHHHHh-hhhhhHHHHHhcccC-CCchHHHHH
Confidence 99999999 888888888778777777766654 12333333333322222 111222223444433 489999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeE
Q psy8366 430 ITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYF 475 (513)
Q Consensus 430 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 475 (513)
++....++|..+|..++|.+.|+.|+....++.+.+.+++..+...
T Consensus 339 l~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 339 LNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888888887776543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=306.62 Aligned_cols=388 Identities=14% Similarity=0.140 Sum_probs=260.9
Q ss_pred HHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhh----HHH--HHHHHhhhhhhhHHHHHHhhhhcc
Q psy8366 37 SVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQ----SSW--LGSILFLFHPFGSIISGYFLEYIG 110 (513)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~----~~~--~~s~~~l~~~i~~~~~g~l~dr~G 110 (513)
.....+..+.++++....+...|.+. ++++.+.++ .+. +.++.++++.++++++|+++||+|
T Consensus 18 ~~~~~~g~~~~~~d~~~~~~~~~~i~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~G 85 (490)
T PRK10642 18 ITAASLGNAMEWFDFGVYGFVAYALG------------KVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYG 85 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34446677788899999999999998 666533321 222 257888999999999999999999
Q ss_pred hhhHHHHHhHHHHHHHHHHHhchhHHH--------HHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHH
Q psy8366 111 RKRLMILVGFPFFLGWILLYLAETVSI--------IMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNF 182 (513)
Q Consensus 111 rr~~~~~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 182 (513)
||+++.+++++++++++++++++|++. ++++|+++|++.|+.++...++++|++|+++||++.++...+..+
T Consensus 86 rr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~ 165 (490)
T PRK10642 86 RQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIA 165 (490)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999875 889999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHhh------------hHhHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHH
Q psy8366 183 GVFIIFLIYA------------LTDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVR 250 (513)
Q Consensus 183 G~~~~~~l~~------------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (513)
|..+++.+.. .+|||+.|++.+++.++..++..++||+|++...+++.++..+ +
T Consensus 166 G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~----------~---- 231 (490)
T PRK10642 166 GFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR----------E---- 231 (490)
T ss_pred HHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc----------c----
Confidence 8877764431 2489999999887766655566778999986432211110000 0
Q ss_pred HHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCC
Q psy8366 251 VEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGL 329 (513)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~ 329 (513)
. ..++ + ..+ ++.++++ .++.........+ .....++....|.|.+++ ..|+
T Consensus 232 ------------------~--~~~~--~---~~~-~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~l~~~~g~ 283 (490)
T PRK10642 232 ------------------G--LQDG--P---KVS-FKEIATK-HWRSLLTCIGLVI-ATNVTYYMLLTYMPSYLSHNLHY 283 (490)
T ss_pred ------------------c--cccc--c---cCC-HHHHHHH-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC
Confidence 0 0000 0 001 2222222 1222222222222 222334556678888885 5688
Q ss_pred Cchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhcccc
Q psy8366 330 PMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGML 408 (513)
Q Consensus 330 ~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (513)
+... ........++.+++.++.|+++||+|||+.+..+..+..+....+.... ...+.........+.+...+ ...
T Consensus 284 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~-~~~ 360 (490)
T PRK10642 284 SEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI--NSNVIGLIFAGLLMLAVILN-CFT 360 (490)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHH-HHH
Confidence 7665 5566677788899999999999999999988777654433322222111 11111222222222222221 222
Q ss_pred chhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHHHHHhheeEEcccCCC
Q psy8366 409 PLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFG-LHGTLFIYTLVSFLGFIYIYFYVPETED 482 (513)
Q Consensus 409 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (513)
.....+..|.+|++.|+++.|+.+....+++.++|.+.+.+.+..+ +..+++...+.++++.+..+ +.||+++
T Consensus 361 g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~-~~pes~~ 434 (490)
T PRK10642 361 GVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV-TMKETAN 434 (490)
T ss_pred HHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-HhccccC
Confidence 3445677899999999999998777778888999999999887654 45555554555554444333 4466544
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=309.27 Aligned_cols=382 Identities=18% Similarity=0.273 Sum_probs=279.5
Q ss_pred CCcccc---hhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccc
Q psy8366 75 PDLILS---DEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGC 151 (513)
Q Consensus 75 ~~~~~s---~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~ 151 (513)
+|+|++ ..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.+++++++|++.++++|++.|++.+.
T Consensus 117 ~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~ 196 (505)
T TIGR00898 117 TEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGG 196 (505)
T ss_pred EEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccc
Confidence 899999 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH-hHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCCh
Q psy8366 152 CEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT-DWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRL 230 (513)
Q Consensus 152 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~ 230 (513)
..+...+++.|++|+++|+++.++...+..+|.++++.++..+ +||+.|++.+++.++..+..+++||+|+|+..+++.
T Consensus 197 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~ 276 (505)
T TIGR00898 197 IWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRI 276 (505)
T ss_pred hHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCH
Confidence 9999999999999999999999999999999999999887765 899999999998888777778899999999999998
Q ss_pred HHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHh
Q psy8366 231 EEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITII 310 (513)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (513)
+++.+.+++..+.+......+......+. ..++++ +..+ ...+++++..+...+......+...
T Consensus 277 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~---~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~ 340 (505)
T TIGR00898 277 EEALKILQRIAKINGKKLPAEVLSLSLEK------------DLSSSK---KQYS-FLDLFRTPNLRKTTLCLMMLWFTTA 340 (505)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHhhhhhh------------hhhhcc---CCCc-HHHHhCChHHHHHHHHHHHHHHHHH
Confidence 88887777665443322111110000000 000000 0112 3444444433333333322222211
Q ss_pred hchhchhhhHHHHHHhcCCCchhHHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCch
Q psy8366 311 ASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGW 390 (513)
Q Consensus 311 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (513)
..++ ..+.+....+.+ ......+.++..+++.++.+++.||+|||+.+.++..+.+++++++.... +...+
T Consensus 341 ~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~---~~~~~ 411 (505)
T TIGR00898 341 FSYY----GLVLDLGNLGGN--IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP---VDLYF 411 (505)
T ss_pred HHHH----HHhccccccCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC---CCchH
Confidence 1111 112222233332 34455566788899999999999999999999988888877776665543 11113
Q ss_pred hhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHH
Q psy8366 391 IPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGF 470 (513)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 470 (513)
.......+..++. .+..+..+.+..|.+|++.|+++.|+.++...+|++++|.+.+ .+..+...++.+++++.+++.
T Consensus 412 ~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~--~~~~~~~~~~~~~~~~~~~~~ 488 (505)
T TIGR00898 412 LRTALAVLGKFGI-TSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY--LGEKWLFLPLVLFGGLALLAG 488 (505)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH--HHHHHHhhHHHHHHHHHHHHH
Confidence 2222222222222 3345666789999999999999999999999999999999988 344566777888887777766
Q ss_pred hheeEEcccCCCCCH
Q psy8366 471 IYIYFYVPETEDRTL 485 (513)
Q Consensus 471 ~~~~~~~~~~~~~~~ 485 (513)
++. +++||++++++
T Consensus 489 ~~~-~~lpet~~~~l 502 (505)
T TIGR00898 489 ILT-LFLPETKGVPL 502 (505)
T ss_pred HHH-HcCcCCCCCCC
Confidence 654 35678777654
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=296.23 Aligned_cols=386 Identities=13% Similarity=0.116 Sum_probs=265.6
Q ss_pred HHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHH
Q psy8366 36 ASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLM 115 (513)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~ 115 (513)
...+.++..+.+.++....+...|.+. +|+|++..+.|++.+++.+++++++++.|+++||+|||+++
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~------------~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~ 76 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMG------------KDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWI 76 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhH------------hhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHH
Confidence 334445555667788888888999888 89999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh--
Q psy8366 116 ILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL-- 193 (513)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~-- 193 (513)
..++++++++++++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+..+|..+++.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 156 (412)
T TIGR02332 77 AGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL 156 (412)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998888877643
Q ss_pred --------HhHHHHHHhhhHHHHHHHH-HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhcccc
Q psy8366 194 --------TDWRTTVLISAIFPILTMI-MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSAT 264 (513)
Q Consensus 194 --------~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (513)
.|||+.|++.+++.++..+ ..+++||+|+... .-..++.+...+..+....+ . .
T Consensus 157 ~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~-~l~~~~~~~~~~~~~~~~~~-------------~---~ 219 (412)
T TIGR02332 157 ALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAK-WLDEEDKKALKEMIDNDQLT-------------L---E 219 (412)
T ss_pred hCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCC-CCCHHHHHHHHHHHHhcccc-------------c---c
Confidence 3899999999888876655 5566899884210 00011111100110000000 0 0
Q ss_pred ccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhc--CCCchh-HHHHHHHH
Q psy8366 265 LYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTF--GLPMKS-EWVLVLTG 341 (513)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~-~~~~~~~~ 341 (513)
..+...++.+ ......++.++++. ++......++.......+..|.|.++++. +++... +.......
T Consensus 220 ----~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~ 289 (412)
T TIGR02332 220 ----QPEGAFAHAA-MPQRSMLREIFTPA-----IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQ 289 (412)
T ss_pred ----cccccccccc-ccHHHHHHHhcChH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHH
Confidence 0000000000 00111133333221 22223333333344566778999999874 555554 67788889
Q ss_pred HHHHHhhhHHHHhhcccCCchHH-HHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccc
Q psy8366 342 ILSITGSFVSTITVNKLGKRGMT-LWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFP 420 (513)
Q Consensus 342 ~~~~~~~~~~g~l~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 420 (513)
++.+++.++.|+++||+++|+.. .....+..++. ++.... . ............ ........+..+....|.+|
T Consensus 290 l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~~---~-~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~ 363 (412)
T TIGR02332 290 FCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASAT---D-HNLIQLLGIIMA-SMGSFSAMAIFWTTPDQSIS 363 (412)
T ss_pred HHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHhc---C-CHHHHHHHHHHH-HHHhhhhhhHHHhhcccccc
Confidence 99999999999999999977753 33333333332 222111 1 122211111111 11111223334455677899
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHH
Q psy8366 421 LQVRGIASGITAASSSVVNFISTKTYINLTSWFG-LHGTLFIYTLVS 466 (513)
Q Consensus 421 ~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~ 466 (513)
+++|+++.|+.+...++|++++|.+.|.+.|..| |...+.+.+++.
T Consensus 364 ~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 364 LQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 9999999999999999999999999999999876 777776665543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=280.51 Aligned_cols=387 Identities=14% Similarity=0.166 Sum_probs=286.9
Q ss_pred HHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhH
Q psy8366 41 NFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGF 120 (513)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~ 120 (513)
.+.....-+.....+...|.+. +|.++|.+|.|++.+++.+.|.++..+.|.++||.++|+.+.++++
T Consensus 35 fiGYa~fYl~RknF~~a~p~l~------------e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLi 102 (448)
T COG2271 35 FIGYAAFYLTRKNFNLAMPALI------------EDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLI 102 (448)
T ss_pred HHHHHHHHHHHHhHhhccHHHH------------HhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHH
Confidence 3344444456677778899999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHh--hhH----
Q psy8366 121 PFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIY--ALT---- 194 (513)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~--~~~---- 194 (513)
+.++.+++++++++.+.+.+..+++|..+|...|++...+..|+|++|||+..++++++.++|..+.+++. ..+
T Consensus 103 lsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~ 182 (448)
T COG2271 103 LSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG 182 (448)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999988887776 433
Q ss_pred hHHHHHHhhhHHHHHHHH-HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccc
Q psy8366 195 DWRTTVLISAIFPILTMI-MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYT 273 (513)
Q Consensus 195 ~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (513)
+||..|++.++++++..+ +++..+|+|+..-... .++.+ ++ ... ..+++
T Consensus 183 ~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~-ie~~~-------~d---~~e-------------------~~~~~ 232 (448)
T COG2271 183 GWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPP-IEEYR-------GD---PLE-------------------IYEEE 232 (448)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC-HHHhh-------cC---chh-------------------hhhhh
Confidence 899999999999988777 5566788886321110 01100 00 000 00000
Q ss_pred hhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhhhHH
Q psy8366 274 TDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGSFVS 351 (513)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~ 351 (513)
++++....++.+.+..++++..|.+.+...+... .-+.+..|.|.|+. ..|++... ....+.+-.++++|+++.
T Consensus 233 ~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYi----vR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~ 308 (448)
T COG2271 233 KENEGLTAWQIFVKYVLKNKLIWLLALANVFVYV----VRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLA 308 (448)
T ss_pred ccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 1111012233445556666655544443333333 34567788888885 58888876 788899999999999999
Q ss_pred HHhhccc--CCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHH
Q psy8366 352 TITVNKL--GKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASG 429 (513)
Q Consensus 352 g~l~d~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 429 (513)
|+++||+ |||....+.+.+.....++..+.. ++.+.+...+++..+++.. .+..-+.-....|..|++..|++.|
T Consensus 309 GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~--~~~~~~l~~~~l~~iGf~I-yGPqmLiGl~a~e~~pK~AaGtA~G 385 (448)
T COG2271 309 GWLSDKLFKGRRGPMALIFMLLITASLVLYWLA--PNGSYLLDAILLFIIGFLI-YGPQMLIGLAAAEFVPKKAAGTATG 385 (448)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHHcC--CCccHHHHHHHHHHHHHHH-hhHHHHHHHHHhccccHhhccchhc
Confidence 9999997 566666544444333333333322 1222233334444443333 4544555568899999999999999
Q ss_pred HHHHHHHH-HHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeEE
Q psy8366 430 ITAASSSV-VNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFY 476 (513)
Q Consensus 430 ~~~~~~~~-g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 476 (513)
+...+.++ |.+.+....|.+.|.+||...|.++.+.++++.++....
T Consensus 386 f~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 386 FVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred hhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 99999999 888899999999999999999998888887776655433
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=266.67 Aligned_cols=423 Identities=16% Similarity=0.192 Sum_probs=320.6
Q ss_pred hHHHHHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcc
Q psy8366 31 CSQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIG 110 (513)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G 110 (513)
+.++...+...+....+.+-.-..+.+.|... ..+|.+..|..++....+.|..+++..+|.++|++|
T Consensus 74 rfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~------------~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~g 141 (528)
T KOG0253|consen 74 RFQWYLFFVAGMGWMADAMEMMLLSLILPALD------------EVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIG 141 (528)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHHHHHHHHH------------hhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhh
Confidence 34555555556666666555555666778887 888999999999999999999999999999999999
Q ss_pred hhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHH
Q psy8366 111 RKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLI 190 (513)
Q Consensus 111 rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l 190 (513)
||+.+.+..+..++...+.+.++|+..+++.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.++...+
T Consensus 142 rr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~l 219 (528)
T KOG0253|consen 142 RRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALL 219 (528)
T ss_pred cchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 899999999999999998877666 8888888887777
Q ss_pred hhh----HhHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHH-----HHHHHHHHhhc
Q psy8366 191 YAL----TDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVR-----VEFEQLVKDTN 261 (513)
Q Consensus 191 ~~~----~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 261 (513)
+.. +||||.....+.+..+.+.+.+++|||||+...+++++++.+.++++.+.|..+-.. ...++..++..
T Consensus 220 aw~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~ 299 (528)
T KOG0253|consen 220 AWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEES 299 (528)
T ss_pred HHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhh
Confidence 654 399999999888887878888899999999999999999999999998776543210 01111111110
Q ss_pred cccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhc--------------
Q psy8366 262 SATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTF-------------- 327 (513)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 327 (513)
+.. ..+.+..++...+ ...++.++.++..+.....++...+..+. ........++..
T Consensus 300 ~~~-------~~~~~a~ke~rg~-~~nLlsp~lrkttlllw~iwfgnafsyyg-~VLlttelfqsgd~c~~~~r~~p~e~ 370 (528)
T KOG0253|consen 300 DLD-------DSKSSAAKEVRGG-TTNLLSPKLRKTTLLLWRIWFGNAFSYYG-SVLLTTELFQSGDACPLYNRFLPTEL 370 (528)
T ss_pred chh-------hhhhccccccccc-hHhhcChHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHhccCccccchhcchhHH
Confidence 000 0000011111122 66778888888888877777776665332 222222222211
Q ss_pred ------CCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHH
Q psy8366 328 ------GLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCF 400 (513)
Q Consensus 328 ------g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (513)
..+... +.-..+..+..+.|.++.++++||+|||+++..++++.+++.+++..+. .........+...
T Consensus 371 e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~-----~rn~~tvllf~ar 445 (528)
T KOG0253|consen 371 ETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK-----TRNAYTVLLFTAR 445 (528)
T ss_pred HhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc-----CcchhHHHHHHHH
Confidence 112222 5667788899999999999999999999999999999988887777665 3334444444444
Q ss_pred HHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeEEcccC
Q psy8366 401 WVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPET 480 (513)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (513)
.+. .+.+...|.|..|++|+..|+++.|.++.+.++|+++.|.+. +........+..+++++++++.+...++.-|+
T Consensus 446 afi-sg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 446 AFI-SGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred HHH-hchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeecc
Confidence 444 345567789999999999999999999999999999999988 44444556678888999998888777787888
Q ss_pred CCCC
Q psy8366 481 EDRT 484 (513)
Q Consensus 481 ~~~~ 484 (513)
++|.
T Consensus 523 kGR~ 526 (528)
T KOG0253|consen 523 KGRS 526 (528)
T ss_pred CCCC
Confidence 8875
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=293.46 Aligned_cols=374 Identities=18% Similarity=0.165 Sum_probs=275.4
Q ss_pred HHHHHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcch
Q psy8366 32 SQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGR 111 (513)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Gr 111 (513)
+.+.......+..+.++++....++..|.+. +++|.++.+.+++.+.+.++..+++++.|+++||+||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~ 79 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMA------------QEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGR 79 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5555666666777788888888889999999 8999999999999999999999999999999999999
Q ss_pred hhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHh
Q psy8366 112 KRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIY 191 (513)
Q Consensus 112 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~ 191 (513)
|+++..+.++.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..+++.++
T Consensus 80 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 159 (406)
T PRK11551 80 KRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIG 159 (406)
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred hhH----hHHHHHHhhhHHHHHHHH-HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhcccccc
Q psy8366 192 ALT----DWRTTVLISAIFPILTMI-MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLY 266 (513)
Q Consensus 192 ~~~----~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (513)
..+ +||+.|++.+++.++..+ ...++||+|++..++++.++.++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------ 209 (406)
T PRK11551 160 VLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPV------------------------------ 209 (406)
T ss_pred HHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhh------------------------------
Confidence 543 899999998877666555 455678887542221110000000
Q ss_pred ccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHH
Q psy8366 267 VADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSI 345 (513)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~ 345 (513)
.+..++++..+....... ..+......+....|.|.++++.|++... +.......++.+
T Consensus 210 -------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ 269 (406)
T PRK11551 210 -------------------LRALFGEGRATATLLLWI-SYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGA 269 (406)
T ss_pred -------------------HHHHhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHH
Confidence 000111110011111111 11111222334556788888888888776 788888889999
Q ss_pred HhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhh
Q psy8366 346 TGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRG 425 (513)
Q Consensus 346 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 425 (513)
+++++.|++.||+++|+.+..+.....++.+.+.... +.+...+...+.+. ...+..+...++..|.+|+++|+
T Consensus 270 ~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g 343 (406)
T PRK11551 270 LGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAP-----SFAGMLLAGFAAGL-FVVGGQSVLYALAPLFYPTQVRG 343 (406)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHcchhhhh
Confidence 9999999999999999988776655555544443321 22222222222222 22344566678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHHHHHhhe
Q psy8366 426 IASGITAASSSVVNFISTKTYINLTSWFG-LHGTLFIYTLVSFLGFIYI 473 (513)
Q Consensus 426 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~ 473 (513)
++.|+.+...++|+.++|.+.|.+.+..+ +...+.....+.+++.++.
T Consensus 344 ~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (406)
T PRK11551 344 TGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAA 392 (406)
T ss_pred hhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998755 3444444444444444433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=300.98 Aligned_cols=384 Identities=11% Similarity=0.063 Sum_probs=262.4
Q ss_pred HHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhH
Q psy8366 41 NFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGF 120 (513)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~ 120 (513)
.+..+...++....++..|.+. +|+|++..+.|++.+++.+++.+++++.|+++||+|||+++.++.+
T Consensus 35 ~~~~~~~y~~r~~~~~~~~~i~------------~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~ 102 (467)
T PRK09556 35 FIGYLTMYLIRKNFKAAQNDMI------------STYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLI 102 (467)
T ss_pred HHHHHHHHHHhcChhhhhHHHH------------HhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHH
Confidence 3444444556777788899999 8999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHh-----chhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH-
Q psy8366 121 PFFLGWILLYL-----AETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT- 194 (513)
Q Consensus 121 ~~~~~~~~~~~-----~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~- 194 (513)
+++++.++.++ +++++.+++.|+++|++.+...+...++++||+|+++||+++++...+.++|..+++.+....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~ 182 (467)
T PRK09556 103 LSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA 182 (467)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence 88877776655 689999999999999999999999999999999999999999999999999999988775422
Q ss_pred ------hHHHHHHhhhHHHHHHHHH-HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccc
Q psy8366 195 ------DWRTTVLISAIFPILTMIM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYV 267 (513)
Q Consensus 195 ------~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (513)
+||..|.+.+++.++..+. +++.+++|+....+ ++ ++.. ... ... +
T Consensus 183 ~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~---~~-~~~~---~~~-~~~--~----------------- 235 (467)
T PRK09556 183 NYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG---KA-EEIF---GEP-ISE--E----------------- 235 (467)
T ss_pred HhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC---Ch-hhcc---cCc-cch--h-----------------
Confidence 5899898888887766554 44557766421100 00 0000 000 000 0
Q ss_pred cccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHH
Q psy8366 268 ADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSI 345 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~ 345 (513)
+...++++......+.+..++++..+ ...+..++..........|.|.+++ .+|++..+ +.......++.+
T Consensus 236 ---~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ 308 (467)
T PRK09556 236 ---DKETESTDMTKWQIFVEYVLKNPVIW----LLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGAL 308 (467)
T ss_pred ---hhccccccCcHHHHHHHHHHcChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 00000000000000111123332222 2222222222234446678898885 58888776 677778888999
Q ss_pred HhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhh
Q psy8366 346 TGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRG 425 (513)
Q Consensus 346 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 425 (513)
++.++.|+++||+++|+.+.....+..++...+.... ..+.+...+..+..+... .+..........|.+|++.+|
T Consensus 309 ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~p~~~~g 384 (467)
T PRK09556 309 VGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQH---ATSEYMYLASLFALGFLV-FGPQLLIGVAAVGFVPKKAIG 384 (467)
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHH-hhHHHHHHHHHHhhcchhhHH
Confidence 9999999999999998877655444333322222211 112222222222222221 222222235667999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhhhhhh------------ccchhHHHHHHHHHHHHHHhhee
Q psy8366 426 IASGITAASSSV-VNFISTKTYINLTS------------WFGLHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 426 ~~~g~~~~~~~~-g~~~~~~~~g~l~~------------~~g~~~~~~~~~~~~~~~~~~~~ 474 (513)
++.|+.+...++ |++++|.+.|.+.| ..||+..|.+..++.+++.+...
T Consensus 385 ~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 385 VANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 999999999997 77999999999999 57889889888777777665443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=295.56 Aligned_cols=384 Identities=13% Similarity=0.089 Sum_probs=261.8
Q ss_pred HHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHH
Q psy8366 43 LLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPF 122 (513)
Q Consensus 43 ~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 122 (513)
..+...++....++.+|.+. +++|+|..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~------------~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~ 98 (434)
T PRK11663 31 GYALFYFTRKSFNAAMPEML------------ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT 98 (434)
T ss_pred HHHHHHHhhhhHHHhhHHHH------------HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence 33334445555677889998 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----hHHH
Q psy8366 123 FLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----DWRT 198 (513)
Q Consensus 123 ~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~ 198 (513)
+++.++++++++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|..+++.+...+ +||+
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~ 178 (434)
T PRK11663 99 GIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRY 178 (434)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998887766543 9999
Q ss_pred HHHhhhHHHHHHHH-HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhc
Q psy8366 199 TVLISAIFPILTMI-MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQR 277 (513)
Q Consensus 199 ~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (513)
.|++.+++.++..+ ..+++||+|++...+...+..++. .+. . +++++
T Consensus 179 ~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--------~~~-----------------------~-~~~~~ 226 (434)
T PRK11663 179 GMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDA--------LEL-----------------------A-QQQEG 226 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccc--------ccc-----------------------c-hhccc
Confidence 99998887765544 455678877532111100000000 000 0 00000
Q ss_pred chhhhhhhhh-hhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhhhHHHHh
Q psy8366 278 KSSQLSKLLN-YLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGSFVSTIT 354 (513)
Q Consensus 278 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l 354 (513)
+..+..+.++ ..++++..+. ..............+..|.|.+++ +.|++... +.......++.++++++.|++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l 302 (434)
T PRK11663 227 AGLSRKEILTKYVLLNPYIWL----LSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWG 302 (434)
T ss_pred cCCChhhhHHHHHhcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0000111011 1222222221 122222222223455668888884 57888776 677788899999999999999
Q ss_pred hccc--CCchHHH-HhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHH
Q psy8366 355 VNKL--GKRGMTL-WSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGIT 431 (513)
Q Consensus 355 ~d~~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 431 (513)
+||+ ++|+... .......+....+.... ..+...........+ ....+..........|.+|++.|+++.|+.
T Consensus 303 ~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 378 (434)
T PRK11663 303 SDKLFNGNRGPMNLIFAAGILLSVGSLWLMP---FASYVMQAACFFTIG-FFVFGPQMLIGMAAAECSHKEAAGAATGFV 378 (434)
T ss_pred HHHhccCCccHHHHHHHHHHHHHHHHHHHcc---cccHHHHHHHHHHHH-HHHhhHHHHHHHHHHhcccHhhHHhHHHHH
Confidence 9998 3333332 22112222222221111 111111111222222 111222223335678999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeEEcc
Q psy8366 432 AASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVP 478 (513)
Q Consensus 432 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 478 (513)
++..++|++++|.+.|.+.|..|+...|...+++++++.+..+...+
T Consensus 379 ~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 425 (434)
T PRK11663 379 GLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLN 425 (434)
T ss_pred HHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998888888777665543333
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=275.99 Aligned_cols=441 Identities=16% Similarity=0.222 Sum_probs=325.7
Q ss_pred ccchhhHHHHHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHh
Q psy8366 26 GFRSACSQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYF 105 (513)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l 105 (513)
.....|+.+....++..+.+.++++...++.+.|.+...++.... ..=+.++...+.+..+..+|..+||+++|++
T Consensus 32 ~~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~----~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~l 107 (538)
T KOG0252|consen 32 SEGLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDE----SGGHYPSGVLALVNAAALVGTIFGQLFFGWL 107 (538)
T ss_pred ccchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCC----CCCcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578888888889999999999999999999999877665543 3345677788999999999999999999999
Q ss_pred hhhcchhhHHHHHhHHHHHHHHHHHhch-------hHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhH
Q psy8366 106 LEYIGRKRLMILVGFPFFLGWILLYLAE-------TVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGA 178 (513)
Q Consensus 106 ~dr~Grr~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 178 (513)
+||+|||+++...+++..+++++++++. -.++++..|++.|+|.|+-+|...++.+|....++||...+...+
T Consensus 108 gD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa 187 (538)
T KOG0252|consen 108 GDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFA 187 (538)
T ss_pred HhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEE
Confidence 9999999999999999999999887753 267899999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhhhH-------------------hHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCCh-HHHHHHHH
Q psy8366 179 ACNFGVFIIFLIYALT-------------------DWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRL-EEAERSLR 238 (513)
Q Consensus 179 ~~~lG~~~~~~l~~~~-------------------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~-~~~~~~~~ 238 (513)
..+.|.+.|.+++..+ -||..|.+.+++++..+...+.+|||+++.....++ +++. +
T Consensus 188 ~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~ 264 (538)
T KOG0252|consen 188 MQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---G 264 (538)
T ss_pred ecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---h
Confidence 8888888777665432 599999999999999999999999999875322221 2221 1
Q ss_pred HhhCCCchhhHHHHHHHHHHhhccccccccccccchhhc-chhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchh
Q psy8366 239 WVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQR-KSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMR 317 (513)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (513)
+..+..+. .. .+ +...+.+.. ++.....+.+.+.+. .-+.++.....++..-. .++...
T Consensus 265 d~~k~~~~-----~~---~~----------~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDi-afy~~n 324 (538)
T KOG0252|consen 265 DMKKVLSV-----DI---EA----------ESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDI-AFYGQN 324 (538)
T ss_pred cccccccc-----cc---ch----------hhccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhh-hhhccc
Confidence 11110000 00 00 000000001 111111222222222 33444444444444333 466677
Q ss_pred hhHHHHHHhcCCCchh-HH---------HHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCC
Q psy8366 318 PFLVEIFRTFGLPMKS-EW---------VLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQW 387 (513)
Q Consensus 318 ~~~~~~~~~~g~~~~~-~~---------~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (513)
.+...+++..|..+.. .. ...+...+.++|..+...++|++|||+..+.+++++.+..+.+...... ..
T Consensus 325 L~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~-~~ 403 (538)
T KOG0252|consen 325 LFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ-LE 403 (538)
T ss_pred cHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc-cc
Confidence 7788888877776543 11 1122233334466777789999999999999999999988877765411 11
Q ss_pred CchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh-----ccchhHHHHHH
Q psy8366 388 PGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTS-----WFGLHGTLFIY 462 (513)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-----~~g~~~~~~~~ 462 (513)
+.....+...+..++..++.......+.+|.+|++.|+++.|+....+..|++++...+.++.+ ..|.+..++++
T Consensus 404 ~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~ 483 (538)
T KOG0252|consen 404 NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIIL 483 (538)
T ss_pred ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHH
Confidence 2334455666677777788888888999999999999999999999999999999999999999 78899999999
Q ss_pred HHHHHHHHhheeEEcccCCCCCHHHHHHHHhcc
Q psy8366 463 TLVSFLGFIYIYFYVPETEDRTLQEILDFFAEN 495 (513)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (513)
+++++++.++.+ +.||+++|++++++++.+.+
T Consensus 484 ~~~~~~gi~~T~-l~pEtk~~~leei~~e~~~~ 515 (538)
T KOG0252|consen 484 AGCMLLGILFTL-LIPETKGKSLEEISNEEESN 515 (538)
T ss_pred HHHHHHhHheeE-EeecccccCHHHhcChhhcc
Confidence 999999888665 55699999999885554433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=290.95 Aligned_cols=377 Identities=19% Similarity=0.244 Sum_probs=266.9
Q ss_pred HHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHH
Q psy8366 37 SVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMI 116 (513)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~ 116 (513)
.....+..+.++++.....+..|.+. +++|+|+.+.+++.+++.+++.++++++|+++||+|||+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~------------~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~ 87 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIK------------ADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMM 87 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH------------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 34555666777888888889999999 899999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh---
Q psy8366 117 LVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL--- 193 (513)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~--- 193 (513)
++.++.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++...+..+|.++++.+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~ 167 (426)
T PRK12307 88 WSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE 167 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877654
Q ss_pred -HhHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhcccccccccccc
Q psy8366 194 -TDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEY 272 (513)
Q Consensus 194 -~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (513)
.+||+.|++..+..++...+....||++++..++.+ ...++.
T Consensus 168 ~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~------------~~~~~~------------------------- 210 (426)
T PRK12307 168 AYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS------------GKGKHS------------------------- 210 (426)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh------------cccccc-------------------------
Confidence 499999988654443333333334665432111000 000000
Q ss_pred chhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHH
Q psy8366 273 TTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVS 351 (513)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~ 351 (513)
++. ......+ ++.+++++..+.........+ ........+..+.|.++++.|.+... +.......++.++++++.
T Consensus 211 -~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 286 (426)
T PRK12307 211 -QSA-WSVFSLS-MKGLFNRAQFPLTLCVFIVLF-SIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVW 286 (426)
T ss_pred -ccc-hhhhhHH-HHHHHhhchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000011 333344433333222222222 22222333456788888888887766 677788889999999999
Q ss_pred HHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHH-HHhccccchhhhhhccccchhhhhHHHHH
Q psy8366 352 TITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFW-VSGYGMLPLPWMLLSEVFPLQVRGIASGI 430 (513)
Q Consensus 352 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 430 (513)
|++.||++||+.+..+..+..+..+.+.... . ..... .....++. ....+..+....++.|.+|++.|+++.|+
T Consensus 287 g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 361 (426)
T PRK12307 287 GLCADRIGLKKTFSIGLLMSFLFIFPLFRIP---Q-DNYLL-LGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGL 361 (426)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHc---c-ccHHH-HHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhH
Confidence 9999999999988877766655544333222 1 12221 11222222 12123334455778899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHHHHh
Q psy8366 431 TAASSSVVNFISTKTYINLTSWFGLHGT-LFIYTLVSFLGFI 471 (513)
Q Consensus 431 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~-~~~~~~~~~~~~~ 471 (513)
.+...++++.++|.+.|.+.+..|+... +++.+..+.++..
T Consensus 362 ~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 403 (426)
T PRK12307 362 IYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILL 403 (426)
T ss_pred HHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999886543 3333333333333
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=287.28 Aligned_cols=383 Identities=16% Similarity=0.166 Sum_probs=268.8
Q ss_pred HHHHHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcch
Q psy8366 32 SQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGR 111 (513)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Gr 111 (513)
+++.......+..+.++++....+++.|.+. +++|+++.+.+++.+++.++..+++++.|+++||+||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------------~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~ 76 (405)
T TIGR00891 9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVA------------GEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGR 76 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444555666777788888888899999999 8999999999999999999999999999999999999
Q ss_pred hhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHh
Q psy8366 112 KRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIY 191 (513)
Q Consensus 112 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~ 191 (513)
|++++++.++.++++++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|..+++.++
T Consensus 77 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 156 (405)
T TIGR00891 77 RLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVY 156 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888876
Q ss_pred hhH----h--HHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccc
Q psy8366 192 ALT----D--WRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATL 265 (513)
Q Consensus 192 ~~~----~--wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (513)
..+ + ||+.|++.+++.++..+....+||++++...+++.++..+..++..+.. +......
T Consensus 157 ~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------ 222 (405)
T TIGR00891 157 SLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGE--HRIANIV------------ 222 (405)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccc--hhhhhhh------------
Confidence 554 4 9999998777666665566677887654322211111111111100000 0000000
Q ss_pred cccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHH
Q psy8366 266 YVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGIL 343 (513)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~ 343 (513)
+.. ... ... +....+......................+.|.++. +.|++... +.......++
T Consensus 223 ----------~~~---~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 286 (405)
T TIGR00891 223 ----------MTL---AAA-MVQ--SAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIG 286 (405)
T ss_pred ----------hhh---hHH-hhh--hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 000 000 000 01111111111111111111112234456666664 57888776 7778888999
Q ss_pred HHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhh
Q psy8366 344 SITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQV 423 (513)
Q Consensus 344 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 423 (513)
.+++.++.+++.||++||+.+..+..+..+....+... ..+.+...+...+.+. ...+..+....++.|.+|+++
T Consensus 287 ~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 361 (405)
T TIGR00891 287 AIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI----GANVAVLGLGLFFQQM-LVQGIWGILPKHLGEYFPTDQ 361 (405)
T ss_pred HHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh----CCchHHHHHHHHHHHH-HHccchhhHHHHHhhhCCcch
Confidence 99999999999999999998877766543332222221 1122222222222222 223445566678899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhccc-hhHHHHH
Q psy8366 424 RGIASGITAASSSVVNFISTKTYINLTSWFG-LHGTLFI 461 (513)
Q Consensus 424 ~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~ 461 (513)
|+++.|+.+...++|+.++|.+.|.+.|..| |+..+..
T Consensus 362 ~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 362 RAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 9999999999999999999999999999988 6654443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=283.44 Aligned_cols=347 Identities=12% Similarity=0.143 Sum_probs=255.0
Q ss_pred ccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhc
Q psy8366 53 MPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLA 132 (513)
Q Consensus 53 ~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 132 (513)
...+.+|.+. +++|.|+++.|++.+++.+++.++++++|+++||+|||+++..+.++.++++++++++
T Consensus 27 ~~~~~~~~l~------------~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 94 (390)
T PRK03545 27 VPVGLLSDIA------------QSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA 94 (390)
T ss_pred HHHcchHHHH------------hHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 4556789998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh----HhHHHHHHhhhHHHH
Q psy8366 133 ETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL----TDWRTTVLISAIFPI 208 (513)
Q Consensus 133 ~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----~~wr~~f~~~~~~~~ 208 (513)
+|++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|..+++.++.. .+||+.|++.+++.+
T Consensus 95 ~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~ 174 (390)
T PRK03545 95 WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGAL 174 (390)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHH
Confidence 9999999999999999998889999999999999999999999999999988888777654 499999999998887
Q ss_pred HHHHH-HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhh
Q psy8366 209 LTMIM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLN 287 (513)
Q Consensus 209 ~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (513)
+..+. ..++||.|+ + ++++ .++ .+
T Consensus 175 l~~~~~~~~~~~~~~----~-~~~~-------------------------------------------------~~~-~~ 199 (390)
T PRK03545 175 ITLLLLIKLLPLLPS----E-HSGS-------------------------------------------------LKS-LP 199 (390)
T ss_pred HHHHHHHHhCCCCCC----C-Ccch-------------------------------------------------HHH-HH
Confidence 76654 444666432 0 0000 000 12
Q ss_pred hhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHH
Q psy8366 288 YLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTL 365 (513)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 365 (513)
..++++..+............ ......+.+.+++ ..|.+... +......+++.++++++.+++.||+++|.. .
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~ 274 (390)
T PRK03545 200 LLFRRPALVSLYLLTVVVVTA----HFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-L 274 (390)
T ss_pred HHHhCcHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-H
Confidence 222332222222222211111 1122345555555 46887776 777788889999999999999999998764 3
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8366 366 WSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKT 445 (513)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 445 (513)
.+..+..++...+.... .+.+...+...+.+.+. ....+.....+.+..| +.+++++|+.+...++|..+||.+
T Consensus 275 ~~~~~~~~~~~~l~~~~----~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~ 348 (390)
T PRK03545 275 IAIALLLVCLLLLLPAA----NSEWHLSVLSIFWGIAI-MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALL 348 (390)
T ss_pred HHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHH-hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433332222 12222222222333322 3334444566777766 688999999999999999999999
Q ss_pred hhhhhhccchhHHHHHHHHHHHHHHhheeEEc
Q psy8366 446 YINLTSWFGLHGTLFIYTLVSFLGFIYIYFYV 477 (513)
Q Consensus 446 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 477 (513)
.|.+.|..|++..+...+++.+++.++.....
T Consensus 349 ~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 349 GNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999998888888777654433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=284.92 Aligned_cols=372 Identities=15% Similarity=0.189 Sum_probs=246.0
Q ss_pred HHHHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCc---ccchhhHHH---HHHHHhhhhhhhHHHHHHhh
Q psy8366 33 QFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDL---ILSDEQSSW---LGSILFLFHPFGSIISGYFL 106 (513)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~---~~s~~~~~~---~~s~~~l~~~i~~~~~g~l~ 106 (513)
++.......+..+.+.++....+...|.+. +++ +.+..+.+. +.++.+++..++++++|+++
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~ 87 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFA------------HIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIA 87 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455667778888888888889888 665 345554443 44555566669999999999
Q ss_pred hhcchhhHHHHHhHHHHHHHHHHHhchhHH--------HHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhH
Q psy8366 107 EYIGRKRLMILVGFPFFLGWILLYLAETVS--------IIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGA 178 (513)
Q Consensus 107 dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 178 (513)
||+|||+++.++.++++++++++++++++. .++++|+++|++.|+..+...++++|++|+++|+++.++...
T Consensus 88 Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~ 167 (432)
T PRK10406 88 DKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYV 167 (432)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHH
Confidence 999999999999999999999999998874 588999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHhh------------hHhHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCch
Q psy8366 179 ACNFGVFIIFLIYA------------LTDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKK 246 (513)
Q Consensus 179 ~~~lG~~~~~~l~~------------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (513)
+...|.++++.+.. ..|||++|++.+++.++...+...+||+|++..++ .+
T Consensus 168 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~------~~----------- 230 (432)
T PRK10406 168 TLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA------LK----------- 230 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh------hc-----------
Confidence 88888777665421 34899999998888877655666678876421000 00
Q ss_pred hhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-
Q psy8366 247 HKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR- 325 (513)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 325 (513)
+ ..+ ++.+++++ +.+.............++.+..|.|.+++
T Consensus 231 ----------------------------~------~~~-~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~ 272 (432)
T PRK10406 231 ----------------------------E------AGS-LKGLWRNR---RAFIMVLGFTAAGSLCFYTFTTYMQKYLVN 272 (432)
T ss_pred ----------------------------c------ccc-HHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 22222221 11222112222212234455678888875
Q ss_pred hcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHh
Q psy8366 326 TFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSG 404 (513)
Q Consensus 326 ~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (513)
..|++... +....+..++..++.++.|+++||++||+.+..+..+..+....+.... ....+.+..+....+.....
T Consensus 273 ~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 350 (432)
T PRK10406 273 TAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSAL-QNVSSPYAAFGLVMCALLIV- 350 (432)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHH-
Confidence 47887665 6666777777788888999999999999887666554433322222111 01111222111111111111
Q ss_pred ccccchhhhhhccccchhhhhHHHHHHHHHHHH-HHHHHHHHhhhhhhccc-hhHHHHHHHHHHHHHHhhee
Q psy8366 405 YGMLPLPWMLLSEVFPLQVRGIASGITAASSSV-VNFISTKTYINLTSWFG-LHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 405 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~ 474 (513)
....+..+.+.+|.+|++.|+++.|+.+...++ ++...|.+.+.+ +..| +...++..++..+++.+..+
T Consensus 351 ~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 351 SFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred HHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 122244557889999999999999999988775 345577777744 5556 44445555555555544433
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=334.89 Aligned_cols=428 Identities=25% Similarity=0.453 Sum_probs=319.3
Q ss_pred HHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHH
Q psy8366 43 LLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPF 122 (513)
Q Consensus 43 ~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 122 (513)
..+..|++....+...+..........+ ....+.+.++.+.+++.+...+|..+|++++|.++||+|||++++++.++.
T Consensus 8 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~ 86 (451)
T PF00083_consen 8 GGFLFGYDLGLIGSFASLLGFLQFFGWS-SSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM 86 (451)
T ss_pred HHHHHHHHHHHHhhHHhhhhhhhccccc-cccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence 3355666666665555544421111100 000111224567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhch---hHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----h
Q psy8366 123 FLGWILLYLAE---TVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----D 195 (513)
Q Consensus 123 ~~~~~~~~~~~---~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~ 195 (513)
.+++++.++++ |++.++++|+++|++.|...+....++.|..|+++|++..++.+.+..+|.+++..++... +
T Consensus 87 ~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 166 (451)
T PF00083_consen 87 IIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSD 166 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999 9999999999999999999999999999999999999999999999999988887775433 4
Q ss_pred ---HHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhcccccccccccc
Q psy8366 196 ---WRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEY 272 (513)
Q Consensus 196 ---wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (513)
||+.+++.++++++..+..+++||||+|+..+++.+++++.++++++.+..++. .++..++ .
T Consensus 167 ~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~---~~~~~~~------------~ 231 (451)
T PF00083_consen 167 NWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEE---IEEIKAE------------K 231 (451)
T ss_pred cccccccccccccccccccccccccccccceeccccccccccccccccccccccccc---ccccccc------------c
Confidence 999999999999888887888999999999999999999888876544221111 1100000 0
Q ss_pred chhhcchhhhhhhhhhhccCC-chhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchhHHHHHHHHHHHHHhhhHH
Q psy8366 273 TTDQRKSSQLSKLLNYLVRPE-IVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVS 351 (513)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 351 (513)
++.+++ ..+ ++.+++++ .+++......+.......+......|.+.+++..+.+.. ........+...++.+++
T Consensus 232 ~~~~~~---~~~-~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 306 (451)
T PF00083_consen 232 KESQES---KAS-WRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS-FLATLILGLVNFLGTLLA 306 (451)
T ss_pred cccccc---cee-eeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence 000000 022 44444443 355556666666666666666777788888877776655 333445567777888888
Q ss_pred HHhhcccCCchHHHHhhHHHHHHHHHHH-HHHHhcCCC---chhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHH
Q psy8366 352 TITVNKLGKRGMTLWSTGINTFFTLMLS-ICAMNLQWP---GWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIA 427 (513)
Q Consensus 352 g~l~d~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 427 (513)
.++.||+|||+.++.+..+..++.+.+. ......+.+ .+..+....+....+..+..+..+.+..|.+|++.|+++
T Consensus 307 ~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~ 386 (451)
T PF00083_consen 307 IFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTG 386 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccc
Confidence 8999999999999998888887777665 111111111 233333344444455556778888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeEEcccCCCCCHHHHHHH
Q psy8366 428 SGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEILDF 491 (513)
Q Consensus 428 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (513)
.|+....+++++++++.+...+.+..+....+.++++++++..++.+++.||+++++++|+++.
T Consensus 387 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 387 IGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred cccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 9999999999999999999998888775667888888888888888999999999999998765
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=289.32 Aligned_cols=407 Identities=15% Similarity=0.180 Sum_probs=270.1
Q ss_pred HHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHH
Q psy8366 36 ASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLM 115 (513)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~ 115 (513)
.....++..+.++++....++.+|.+. +++|+++.+.+++.+.+.+++.+++++.|+++||+|||+.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~------------~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 88 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQ------------GEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAM 88 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 334445556667778888888999999 89999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH-
Q psy8366 116 ILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT- 194 (513)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~- 194 (513)
+++.++.+++.+++++++|++.+++.|++.|++.+...+....++.|++|+++|+++.++...+..+|..+++.+...+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 168 (496)
T PRK03893 89 VISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV 168 (496)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998888876654
Q ss_pred ---hHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccc
Q psy8366 195 ---DWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSE 271 (513)
Q Consensus 195 ---~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (513)
+||+.|++.++..++.++....+||++++..++++.++.++..+....... .............. ... .
T Consensus 169 ~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~------~ 240 (496)
T PRK03893 169 PVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEH-RIINILLTLAAAAA-LWF------C 240 (496)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchh-HHHHHHHHHHHHHH-HHH------H
Confidence 899999876555444444455577776542222111111111111100000 00000000000000 000 0
Q ss_pred cchhhcchhhhh----------hhhhh-hccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHH
Q psy8366 272 YTTDQRKSSQLS----------KLLNY-LVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLV 338 (513)
Q Consensus 272 ~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~ 338 (513)
..... ...+. -+... .......++............+........+.|.+++ +.|++... +....
T Consensus 241 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~ 318 (496)
T PRK03893 241 FAGNL--QNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLF 318 (496)
T ss_pred HHhhh--cchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 00000 00000 00000 0001111122222222222222222234567888885 78888776 78888
Q ss_pred HHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccc
Q psy8366 339 LTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEV 418 (513)
Q Consensus 339 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (513)
...++.+++.++.|+++||+++|+.+..+..+..+..+.+.... . ..+.............+.+..+...+++.|.
T Consensus 319 ~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (496)
T PRK03893 319 FSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIG---G-ANVWVLGLLLFFQQMLGQGISGLLPKLIGGY 394 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc---c-cHHHHHHHHHHHHHHHhcccchhhHHHHHhh
Confidence 89999999999999999999999988777655555443332221 1 1222222222222222234445556788899
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHH
Q psy8366 419 FPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFL 468 (513)
Q Consensus 419 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 468 (513)
+|++.|++++|+.+....+|+.++|.+.|.+.+..|+...+...++.+.+
T Consensus 395 ~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 395 FDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred CCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988777655544433
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=274.67 Aligned_cols=346 Identities=11% Similarity=0.056 Sum_probs=238.5
Q ss_pred ccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHH
Q psy8366 51 FGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLY 130 (513)
Q Consensus 51 ~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 130 (513)
....++.+|.+. +|+|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+...
T Consensus 7 ~~~~~~~lp~i~------------~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~ 74 (368)
T TIGR00903 7 WVTFSPVLSLVA------------EDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLL 74 (368)
T ss_pred HHHHHhhHHHHH------------HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 344568899999 89999999999999999999999999999999999999887666555555443334
Q ss_pred hchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHH
Q psy8366 131 LAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLISAIF 206 (513)
Q Consensus 131 ~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~ 206 (513)
.++|++.++++|+++|++.+. .+.....++|++|+++|++++++...+..+|..+++.++..+ |||+.|++.+++
T Consensus 75 ~~~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l 153 (368)
T TIGR00903 75 DPFNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAV 153 (368)
T ss_pred HhccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 447999999999999999985 556666779999999999999999999999998888776655 999999998888
Q ss_pred HHHHHH-HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhh
Q psy8366 207 PILTMI-MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKL 285 (513)
Q Consensus 207 ~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (513)
+++..+ .++++||+|++..+ +.+. ++ . .++
T Consensus 154 ~~~~~~~~~~~lp~~p~~~~~--~~~~-~~----------------~-----------------------------~~~- 184 (368)
T TIGR00903 154 AAAGIILVLAALPALPFQAAE--GFGF-KD----------------A-----------------------------VKE- 184 (368)
T ss_pred HHHHHHHHHHHcCCCCCCCCC--Ccch-HH----------------H-----------------------------HHH-
Confidence 877665 56678998763210 0000 00 0 001
Q ss_pred hhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchhHHHHHHHHHHHHHhhhHHHHhhcccCCc---h
Q psy8366 286 LNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKR---G 362 (513)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---~ 362 (513)
++.+++++..+... ...++.....+.+..|.|.++++.|++...+....+..+.+.++ .++++||..|| +
T Consensus 185 ~~~ll~~~~~~~~~----~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~ 257 (368)
T TIGR00903 185 FGALAGRKDLWIIG----AILGFGVALFDNLAIWLEAALRPAGLEDIAGDAVALAILAGLIG---VAVIPDRVARAGLRS 257 (368)
T ss_pred HHHHHcChhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHH---HHHhhHHhhhhhhHH
Confidence 33333433333222 22333333455667899999988787754444444444544444 47777777543 3
Q ss_pred HHHH-hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHH
Q psy8366 363 MTLW-STGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFI 441 (513)
Q Consensus 363 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 441 (513)
.... ...+.++....+... .+.+.......+.+ .......+..+++.+|.+|++.|+++.|+.+..+++++..
T Consensus 258 ~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~ 331 (368)
T TIGR00903 258 IYIRAAALLIAAFFLALAFE-----LNRLALFAFIGIAG-LLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVA 331 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHc-----cccHHHHHHHHHHH-HhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHH
Confidence 3222 233333322222211 12222222222222 2223344556789999999999999999999999999999
Q ss_pred HHHHhhhhhhccchhHHHHHHHHHHHHHHhhe
Q psy8366 442 STKTYINLTSWFGLHGTLFIYTLVSFLGFIYI 473 (513)
Q Consensus 442 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 473 (513)
+|.+.+.+.. |....|.++++..+++.+..
T Consensus 332 ~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 332 LALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred HHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 9999988774 66677888887777776654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=276.24 Aligned_cols=354 Identities=11% Similarity=0.062 Sum_probs=257.4
Q ss_pred ccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHH
Q psy8366 51 FGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLY 130 (513)
Q Consensus 51 ~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 130 (513)
....++.+|.+. +|+|+|.++.|++.+.+.+++.+++++.|+++||+|||+++..+..+++++.++++
T Consensus 25 ~~~~~~~lp~i~------------~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~ 92 (393)
T PRK09705 25 LTSVGPLLPQLR------------QASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRE 92 (393)
T ss_pred hhccchhHHHHH------------HHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 356678999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh----H-hHHHHHHhhhH
Q psy8366 131 LAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL----T-DWRTTVLISAI 205 (513)
Q Consensus 131 ~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----~-~wr~~f~~~~~ 205 (513)
+++|++.++++|+++|++.+...+....++.+++| ++|+++++++..+..+|..+++.++.. . +||+.+.+.++
T Consensus 93 ~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~ 171 (393)
T PRK09705 93 LYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWAL 171 (393)
T ss_pred HCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999996 889999999988777777666665543 2 89998877666
Q ss_pred HHHHHHHHHHhc-cCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhh
Q psy8366 206 FPILTMIMIAFI-PESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSK 284 (513)
Q Consensus 206 ~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (513)
..++..+..+.. ++.|+ ++ + +++.+ .
T Consensus 172 ~~~~~~~~~~~~~~~~~~-----~~--~-----------------------------------------~~~~~-----~ 198 (393)
T PRK09705 172 PAVVALFAWWWQSAREVA-----SS--H-----------------------------------------KTTTT-----P 198 (393)
T ss_pred HHHHHHHHHHHHhcCCCc-----cc--c-----------------------------------------CCCcC-----C
Confidence 655444333322 22111 00 0 00000 0
Q ss_pred hhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchH
Q psy8366 285 LLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGM 363 (513)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 363 (513)
.+.+++++ .+. .. +........+.....|.|.++++.|.+... +....+.+++.++++++.+++.||++||+.
T Consensus 199 -~~~l~~~~-~~~---l~-~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~ 272 (393)
T PRK09705 199 -VRVVFTPR-AWT---LG-VYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKL 272 (393)
T ss_pred -cccccCHh-HHH---HH-HHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHH
Confidence 11111111 111 11 112222223445667888888888888776 788889999999999999999999999998
Q ss_pred HHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhcccc-chhhhhHHHHHHHHHHHHHHHHH
Q psy8366 364 TLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVF-PLQVRGIASGITAASSSVVNFIS 442 (513)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~ 442 (513)
+..+..+..++..++.... ...... ...+.+.+. ....+.......+.. |+++++++.|+.+...++++.++
T Consensus 273 ~~~~~~l~~~~~~~~~~~~-----~~~~~~-~~~l~g~g~-g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g 345 (393)
T PRK09705 273 LMLALVLQLVGFCGFIWLP-----LQLPVL-WAMVCGLGL-GGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLA 345 (393)
T ss_pred HHHHHHHHHHHHHHHHHcc-----chHHHH-HHHHHHHhc-cchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777666655444322 111111 122222222 233454445555655 46789999999999999999999
Q ss_pred HHHhhhhhhccc-hhHHHHHHHHHHHHHHhheeEEcccCCCC
Q psy8366 443 TKTYINLTSWFG-LHGTLFIYTLVSFLGFIYIYFYVPETEDR 483 (513)
Q Consensus 443 ~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (513)
|.+.|++.|..| +...+.+.++++++..++...+.+|++.+
T Consensus 346 p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK09705 346 PWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQ 387 (393)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999987 66667776666666666556666666554
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=279.97 Aligned_cols=375 Identities=15% Similarity=0.162 Sum_probs=250.2
Q ss_pred HHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCc--ccchhhHHHHH-----HHHhhhhhhhHHHHHHhhhhc
Q psy8366 37 SVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDL--ILSDEQSSWLG-----SILFLFHPFGSIISGYFLEYI 109 (513)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~--~~s~~~~~~~~-----s~~~l~~~i~~~~~g~l~dr~ 109 (513)
.....+..+.+.++....+.+.|.+.. +++ +.++. .+++. ++.+++..+++++.|+++||+
T Consensus 24 ~~~~~~~~~~~~~d~~~~~~~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~ 91 (438)
T PRK09952 24 ALGSFAGAVVDWYDFLLYGITAALVFN-----------REFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL 91 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Confidence 334455667778888877777764431 333 45554 35443 455677889999999999999
Q ss_pred chhhHHHHHhHHHHHHHHHHHhchhHH--------HHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHH
Q psy8366 110 GRKRLMILVGFPFFLGWILLYLAETVS--------IIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACN 181 (513)
Q Consensus 110 Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 181 (513)
|||++++++.+++++++++++++++++ .++++|+++|++.|+..+....++.|++|+++|++..+....+..
T Consensus 92 Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~ 171 (438)
T PRK09952 92 GRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYG 171 (438)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence 999999999999999999999999987 588999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh------------hHhHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhH
Q psy8366 182 FGVFIIFLIYA------------LTDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKV 249 (513)
Q Consensus 182 lG~~~~~~l~~------------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (513)
+|.+++..+.. ..+||++|++.+++.++...+....||+|++...+++.++.+
T Consensus 172 ~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~--------------- 236 (438)
T PRK09952 172 VGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAK--------------- 236 (438)
T ss_pred HHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccccc---------------
Confidence 99988765432 358999999988876665545556788876532211100000
Q ss_pred HHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcC
Q psy8366 250 RVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFG 328 (513)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g 328 (513)
++ .+..+.+++++. .......... ......+....|.|.+++ ..|
T Consensus 237 -------------------------~~------~~~~~~l~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~y~~~~~g 282 (438)
T PRK09952 237 -------------------------KR------IPVIEALLRHPG--AFLKIIALRL-CELLTMYIVTAFALNYSTQNLG 282 (438)
T ss_pred -------------------------cc------CCHHHHHHHchH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 00 000111222211 1111111111 222223445567777764 567
Q ss_pred CCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccc
Q psy8366 329 LPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGM 407 (513)
Q Consensus 329 ~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (513)
++... .......++..+++.++.|+++||++||+.+..+..+..++...+.... ...+....++...+.........
T Consensus 283 ~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~ 360 (438)
T PRK09952 283 LPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMAL--EAQSIFWIVFFSIMLANIAHDMV 360 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--HcCChHHHHHHHHHHHHHHHHHH
Confidence 76654 3444556777788899999999999999988877665554433332221 11122222222222222221233
Q ss_pred cchhhhhhccccchhhhhHHHHHHHHHHH-HHHHHHHHHhhhhhhcc--chhHHHHHHHHHHHHHHhhee
Q psy8366 408 LPLPWMLLSEVFPLQVRGIASGITAASSS-VVNFISTKTYINLTSWF--GLHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 408 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~ 474 (513)
.+..+++..|.+|++.|+++.|+.+.... +++.++|.+.+.+.+.. +|...+...+++.+++.+..+
T Consensus 361 ~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~ 430 (438)
T PRK09952 361 VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL 430 (438)
T ss_pred HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999999999776654 89999999999998854 366666666666666655443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=283.18 Aligned_cols=365 Identities=13% Similarity=0.149 Sum_probs=235.8
Q ss_pred HhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHH
Q psy8366 44 LFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFF 123 (513)
Q Consensus 44 ~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 123 (513)
.+...+......+.+|.+. +++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++
T Consensus 45 ~~~~~~~~~~~~~~~~~l~------------~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~ 112 (476)
T PLN00028 45 FFTCFVSTFAAAPLLPIIR------------DNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTA 112 (476)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3333344445667888898 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHH----HHHhh-------
Q psy8366 124 LGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFII----FLIYA------- 192 (513)
Q Consensus 124 ~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~----~~l~~------- 192 (513)
++.++++++++++.+++.|+++|++.+.. +....+++|++|+++|++++++.....++|..++ +.+..
T Consensus 113 ~~~~~~~~~~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 191 (476)
T PLN00028 113 PAVFCMSLVSSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGA 191 (476)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999998864 4456788999999999999999876665555554 33322
Q ss_pred --hHhHHHHHHhhhHHHHHHHHHHHhcc-CchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccc
Q psy8366 193 --LTDWRTTVLISAIFPILTMIMIAFIP-ESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVAD 269 (513)
Q Consensus 193 --~~~wr~~f~~~~~~~~~~~~~~~~~~-e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (513)
..+||+.|++.+++.++..+..++++ +.|+ ++.++..+ + .
T Consensus 192 ~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~~---~--~--------------------------- 234 (476)
T PLN00028 192 PSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELKK---S--G--------------------------- 234 (476)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHHh---c--C---------------------------
Confidence 14899999999998887776555544 3332 11000000 0 0
Q ss_pred cccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHh
Q psy8366 270 SEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITG 347 (513)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~ 347 (513)
+.++.+ .... ++...+.+..+...... +...........+.|.++. +.|++... +....+..++.+++
T Consensus 235 ---~~~~~~--~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig 304 (476)
T PLN00028 235 ---TMPKDS--FSKV-LRYGVTNYRTWILALTY----GYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFA 304 (476)
T ss_pred ---cccccc--HHHH-HHHHHcCchhHHHHHHH----HHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 000000 0011 22222222222222211 1111112234456677664 56888776 77888899999999
Q ss_pred hhHHHHhhcccCCch-------HHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccc
Q psy8366 348 SFVSTITVNKLGKRG-------MTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFP 420 (513)
Q Consensus 348 ~~~~g~l~d~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 420 (513)
+++.|+++||++||+ .......+.++..+++.. ..+.+.......+...+. ....+..+.+..+..|
T Consensus 305 ~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~-----~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~ 378 (476)
T PLN00028 305 RPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR-----ANSLGAAIVVMILFSIFV-QAACGATFGIVPFVSR 378 (476)
T ss_pred HhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHHHH-HHhhhhhcccCcccCh
Confidence 999999999998652 111222222222221111 112222222222222222 1223344556677654
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeEE
Q psy8366 421 LQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFY 476 (513)
Q Consensus 421 ~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 476 (513)
+.+|++.|+.+..+++|+.++|.+.+ ..+..+|...|++.+++.+++.++.++.
T Consensus 379 -~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 379 -RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred -hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 79999999998888888888887765 2233458888888887777776654433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=276.31 Aligned_cols=351 Identities=16% Similarity=0.208 Sum_probs=234.7
Q ss_pred HHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHH-HHHH-----hhhhhhhHHHHHHhhhhc
Q psy8366 36 ASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWL-GSIL-----FLFHPFGSIISGYFLEYI 109 (513)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~-~s~~-----~l~~~i~~~~~g~l~dr~ 109 (513)
.....++..+.+.++....++..|.+. +|++.++.+.+.+ .+.. .++..+++++.|+++||+
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~ 83 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIA------------KTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV 83 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Confidence 355556778888899999999999999 8899888776543 3332 233357899999999999
Q ss_pred chhhHHHHHhHHHHHHHHHHHhchhHH--------HHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHH
Q psy8366 110 GRKRLMILVGFPFFLGWILLYLAETVS--------IIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACN 181 (513)
Q Consensus 110 Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 181 (513)
|||++++.+.+++++++++++++++++ .++++|+++|++.+...+....+++|++|+++|++++++...+..
T Consensus 84 Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~ 163 (434)
T PRK15075 84 GRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQ 163 (434)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHH
Confidence 999999999999999999999999987 468999999999999999999999999999999999999887766
Q ss_pred HHHHHHHHHhh------------hHhHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhH
Q psy8366 182 FGVFIIFLIYA------------LTDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKV 249 (513)
Q Consensus 182 lG~~~~~~l~~------------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (513)
+|..+++.++. .+|||++|++..+...+........||++++..++.+ .
T Consensus 164 ~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-------------~------ 224 (434)
T PRK15075 164 VAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR-------------P------ 224 (434)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc-------------c------
Confidence 66555544432 3499999997654432222222223443211000000 0
Q ss_pred HHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh-cC
Q psy8366 250 RVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT-FG 328 (513)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g 328 (513)
+ ..+.++...++ ++.........+........+..|.|.++++ .|
T Consensus 225 -------------------------~------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g 270 (434)
T PRK15075 225 -------------------------S------MREIFRSLAAN---WRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLH 270 (434)
T ss_pred -------------------------c------cccHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 00001111111 1112111122222233355667889998875 78
Q ss_pred CCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHH-HHHHHHHhcCCCchhhHHH-HHHHHHHHhc
Q psy8366 329 LPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTL-MLSICAMNLQWPGWIPLTI-FCTCFWVSGY 405 (513)
Q Consensus 329 ~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 405 (513)
++..+ ++...+..++.+++.++.|+++||++||+.+..+..+..+... .+.... .. ........ ..+.+.+. .
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~-g 346 (434)
T PRK15075 271 LSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLV--AA-PSFARMLAVELWLSFLY-G 346 (434)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH--cC-CchHHHHHHHHHHHHHH-H
Confidence 88776 6677778888999999999999999999987765444332221 111111 11 22211111 12222222 2
Q ss_pred cccchhhhhhccccchhhhhHHHHHHHHHHHH-HHHHHHHHhhhhhhccch
Q psy8366 406 GMLPLPWMLLSEVFPLQVRGIASGITAASSSV-VNFISTKTYINLTSWFGL 455 (513)
Q Consensus 406 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~ 455 (513)
...+..+.+..|.+|++.|+++.|+.+.+... ++.++|.+.|.+.|..|+
T Consensus 347 ~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 347 SYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 23344557889999999999999997666654 588899999999998885
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=278.05 Aligned_cols=373 Identities=14% Similarity=0.156 Sum_probs=248.3
Q ss_pred ccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHH
Q psy8366 49 MAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWIL 128 (513)
Q Consensus 49 ~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 128 (513)
.+....+..+|.+. ++ |++..+.+++.+.+.+++.++++++|+++||+|||++++++.++.+++.++
T Consensus 43 ~~~~~~~~~~p~l~------------~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~ 109 (452)
T PRK11273 43 LVRKNFALAMPYLV------------EQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLF 109 (452)
T ss_pred HHHHHHHHhhHHHH------------Hc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHH
Confidence 33333456778887 67 999999999999999999999999999999999999999999999999998
Q ss_pred HHhch----hHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHH-HHHHHhh----hHhHHHH
Q psy8366 129 LYLAE----TVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVF-IIFLIYA----LTDWRTT 199 (513)
Q Consensus 129 ~~~~~----~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~-~~~~l~~----~~~wr~~ 199 (513)
+++++ +++.+++.|++.|++.+...+.....+.|++|+++|+++++++..+.++|.. .++++.. ..+||+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~ 189 (452)
T PRK11273 110 MGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAA 189 (452)
T ss_pred HHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHH
Confidence 88764 7888999999999999998888888899999999999999999999888864 4444322 2399999
Q ss_pred HHhhhHHHHHHHH-HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcc
Q psy8366 200 VLISAIFPILTMI-MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRK 278 (513)
Q Consensus 200 f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (513)
|++.+++.++..+ ..+++||+|+....+.+ ++.++ +... + ....++++.
T Consensus 190 f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~---~~~~---------~----------------~~~~~~~~~- 239 (452)
T PRK11273 190 LYMPAFAAILVALFAFAMMRDTPQSCGLPPI-EEYKN---DYPD---------D----------------YNEKHEQEL- 239 (452)
T ss_pred HHHHHHHHHHHHHHHHHHccCCHhhcCCCCh-hhhhh---cccc---------c----------------cccccCCCc-
Confidence 9998888777555 56667888753211111 00000 0000 0 000000000
Q ss_pred hhhhhh-hhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh-cCCCchh-HHHHHHHHHHHHHhhhHHHHhh
Q psy8366 279 SSQLSK-LLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT-FGLPMKS-EWVLVLTGILSITGSFVSTITV 355 (513)
Q Consensus 279 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~ 355 (513)
+..+ +.+..++++..+...+...+.. ...+....|+|.++++ .|++... +....+..++.+++.++.|+++
T Consensus 240 --~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~ 313 (452)
T PRK11273 240 --TAKQIFMQYVLPNKLLWYIAIANVFVY----LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMS 313 (452)
T ss_pred --cHHHHHHHHHHcChHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 1122333333332222222221 2234456788998875 6887665 6777788889999999999999
Q ss_pred ccc--CCchHHH-HhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHH
Q psy8366 356 NKL--GKRGMTL-WSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITA 432 (513)
Q Consensus 356 d~~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 432 (513)
||+ +||+... ....+..++.+.+.... ..+.+...+.....+... .+.......+..|.+|++.||+++|+.+
T Consensus 314 dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~ 389 (452)
T PRK11273 314 DKVFRGNRGATGVFFMTLVTIATIVYWLNP---AGNPTVDMACMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTG 389 (452)
T ss_pred HHHccCCcchHHHHHHHHHHHHHHHHHHhc---ccChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHcChhhhhhHHHHHH
Confidence 999 4444322 22222222222221111 112222222222222211 1222223346679999999999999999
Q ss_pred HHHHHHHHH-HHHHhhhhhhccchhHHHHHHHHHHHHHHhhee
Q psy8366 433 ASSSVVNFI-STKTYINLTSWFGLHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 433 ~~~~~g~~~-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 474 (513)
...++|+.+ +|.+.|.+.|..|++..|++.+++++++.+...
T Consensus 390 ~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 390 LFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 999998765 799999999999999999888888777766544
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=274.79 Aligned_cols=349 Identities=14% Similarity=0.127 Sum_probs=255.8
Q ss_pred ccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhc
Q psy8366 53 MPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLA 132 (513)
Q Consensus 53 ~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 132 (513)
..++..|.+. +++|+|+++.|++.+++.+++.++++++|+++||+|||+++.++.++.+++.++++++
T Consensus 21 ~~~~~~~~~~------------~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~ 88 (377)
T TIGR00890 21 TWTLLAPPLG------------RYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA 88 (377)
T ss_pred hhhhHHHHHH------------HHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH
Confidence 4567899999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh----HhHHHHHHhhhHHHH
Q psy8366 133 ETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL----TDWRTTVLISAIFPI 208 (513)
Q Consensus 133 ~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----~~wr~~f~~~~~~~~ 208 (513)
+|++.++++|++.|++.+...+.....+.|++| ++|+++.++...+.++|..+++.+... .+||+.|++.+++.+
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 167 (377)
T TIGR00890 89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFL 167 (377)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999888888888999986 679999999999999988765544433 289999999998888
Q ss_pred HHHHH-HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhh
Q psy8366 209 LTMIM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLN 287 (513)
Q Consensus 209 ~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (513)
+..+. .++++|+|+.. .+++.+ . +++ ..+ .+
T Consensus 168 ~~~~~~~~~~~~~~~~~-~~~~~~--------------~--------------------------~~~------~~~-~~ 199 (377)
T TIGR00890 168 LVIVLGAFLIGYPPGQL-IKTNIE--------------V--------------------------SVK------DYT-VW 199 (377)
T ss_pred HHHHHHHHheecCchhc-cccCcc--------------c--------------------------chh------hhh-HH
Confidence 77664 44455543210 000000 0 000 000 12
Q ss_pred hhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHH
Q psy8366 288 YLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLW 366 (513)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 366 (513)
...+++..+........... .......+.+.+.++.+.+... +.......++.++++++.|++.||++||+.+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 275 (377)
T TIGR00890 200 EMLRTPQFWVLYLSFFLNAV----SGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSI 275 (377)
T ss_pred HHHcCccHHHHHHHHHHHhH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 22233222222222221111 1222334455566677777655 677888899999999999999999999999888
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHh
Q psy8366 367 STGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTY 446 (513)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 446 (513)
+..+..++.+.+.... ....+.......+.+... ....+....+..|.+|+++|+++.|+.+....+|..++|.+.
T Consensus 276 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 351 (377)
T TIGR00890 276 VFGISAVGMAAMLFIP---MLNDVLFLATVALVFFTW-GGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIA 351 (377)
T ss_pred HHHHHHHHHHHHHHcc---cchhHHHHHHHHHHHHHh-ccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHH
Confidence 8777777766554432 111111112222222222 233345557888999999999999999999999999999999
Q ss_pred hhhhhccchhHHHHHHHHHHHHHH
Q psy8366 447 INLTSWFGLHGTLFIYTLVSFLGF 470 (513)
Q Consensus 447 g~l~~~~g~~~~~~~~~~~~~~~~ 470 (513)
|.+.+..|++..+.+.+++.+++.
T Consensus 352 g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 352 SHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHhhhchhhHHHHHHHHHHHhc
Confidence 999999999998888877776654
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=276.51 Aligned_cols=369 Identities=14% Similarity=0.088 Sum_probs=246.4
Q ss_pred cccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHh
Q psy8366 52 GMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYL 131 (513)
Q Consensus 52 ~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 131 (513)
...+..+|.+. +++|++.++.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++++++++
T Consensus 36 ~~~~~~~~~i~------------~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 103 (455)
T TIGR00892 36 KAVTVFFKELQ------------QIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASF 103 (455)
T ss_pred cchhhhHHHHH------------HHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHH
Confidence 44566788888 899999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHH-HHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh----HhHHHHHHhhhHH
Q psy8366 132 AETVSIIML-GTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL----TDWRTTVLISAIF 206 (513)
Q Consensus 132 ~~~~~~l~~-~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----~~wr~~f~~~~~~ 206 (513)
+++++.+++ .|+++|++.+...+...+++.++++ ++|+++.++...+..+|..+++.++.. .|||+.|++.+++
T Consensus 104 ~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~ 182 (455)
T TIGR00892 104 SSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGL 182 (455)
T ss_pred hhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 999998875 5799999999877778888899995 789999999999998888877776554 4999999999988
Q ss_pred HHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhh
Q psy8366 207 PILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLL 286 (513)
Q Consensus 207 ~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (513)
.++..+..+++.+.++.. .+.+ ++.++ .....+..+ +.......++..+..+ +
T Consensus 183 ~~~~~v~~~~~~~~~~~~-~~~~-~~~~~---~~~~~~~~~---------------------~~~~~~~~~~~~~~~~-~ 235 (455)
T TIGR00892 183 LLHCCVCGALMRPVGPSQ-RVSK-SKSKE---GLPPDGSTK---------------------KLSKKSTAEKINRFLD-F 235 (455)
T ss_pred HHHHHHHHHHhCCCCccc-cccc-ccccc---cCCCCCccc---------------------cccccchhhhhhhhcc-h
Confidence 876665444433221100 0000 00000 000000000 0000000000000001 2
Q ss_pred hhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhccc--CCchH
Q psy8366 287 NYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKL--GKRGM 363 (513)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~ 363 (513)
+ .++++..+.... ..+...........+++.+.++.|++... +...++.+++.++++++.+++.||. ++++.
T Consensus 236 ~-~~~~~~~~~~~~----~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 310 (455)
T TIGR00892 236 S-LFTHRGFLVYLS----GNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQ 310 (455)
T ss_pred H-HhcCchHHHHHH----HHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHH
Confidence 2 223322222222 11222222344456777777778888776 7888888999999999999999974 33433
Q ss_pred HHHhh--HHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHH
Q psy8366 364 TLWST--GINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFI 441 (513)
Q Consensus 364 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 441 (513)
..+.. .+.+++.+++... .+.+...+...+.+.+. ....+...+.+.|.+|+++++++.|+.+...++|+++
T Consensus 311 ~~~~~~~~~~~l~~ll~~~~-----~~~~~~~i~~~~~G~~~-g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 384 (455)
T TIGR00892 311 YLFSFALLFNGLTHLLCALA-----GDYTGLVIYCIFFGLSF-GSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLI 384 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----chHHHHHHHHHHHHHHh-chHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHc
Confidence 33322 2222222222221 12333333333333332 3445666788889999999999999999999999999
Q ss_pred HHHHhhhhhhccc-hhHHHHHHHHHHHHHHh
Q psy8366 442 STKTYINLTSWFG-LHGTLFIYTLVSFLGFI 471 (513)
Q Consensus 442 ~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 471 (513)
+|.+.|.+.+..| |+..|.+.+++.+++.+
T Consensus 385 gp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 385 GPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred cccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 9999999999875 88888887776666554
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=272.18 Aligned_cols=394 Identities=14% Similarity=0.095 Sum_probs=268.4
Q ss_pred HHHHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchh
Q psy8366 33 QFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRK 112 (513)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr 112 (513)
++......++..+...++....+..+|.+. +|+|.+.++.+|+.+.|.+++.++++++|+++||+|||
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~------------~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk 71 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLS------------MTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFK 71 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 344556667778888899999999999999 99999999999999999999999999999999999999
Q ss_pred hHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccC-CccccchhhhHhhHHHHHHHHHHHHHh
Q psy8366 113 RLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEIS-EPRMRGSLSLFAGAACNFGVFIIFLIY 191 (513)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~lG~~~~~~l~ 191 (513)
++++++.+++.++++++++++|++.++++|+++|+|.+...+.....+.+.+ |+++|++++++......+|..+||.++
T Consensus 72 ~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lg 151 (495)
T PRK14995 72 RLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVG 151 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888888787765 689999999999999999988888887
Q ss_pred hhH----hHHHHHHhhhHHHHHHHH-HHHhccCchhhhhhcCChHHHHHH-------HHHhhCC-CchhhHHHHHHHHHH
Q psy8366 192 ALT----DWRTTVLISAIFPILTMI-MIAFIPESPTWLVSKGRLEEAERS-------LRWVRGW-SKKHKVRVEFEQLVK 258 (513)
Q Consensus 192 ~~~----~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~ 258 (513)
+.+ +|||.|++...+.++..+ ..+++||+|+...++.+....... ...+... ...............
T Consensus 152 g~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 231 (495)
T PRK14995 152 GILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLT 231 (495)
T ss_pred HHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 665 999999998888777665 455677765311111111110000 0000000 000000000000000
Q ss_pred hhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh-cCCCchh-HHH
Q psy8366 259 DTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT-FGLPMKS-EWV 336 (513)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~ 336 (513)
..... ......+.+..++..+ ++.+ +++.........+.. .........+.|.+++. +|+++.. +..
T Consensus 232 ~~~~l-----~~f~~~e~~~~~p~~~-~~lf-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~lq~v~g~s~~~ag~~ 300 (495)
T PRK14995 232 GALLL-----GLFIRTQLAASRPMID-MRLF-THRIILSGVVMAMTA----MITLVGFELLMAQELQFVHGLSPLEAGMF 300 (495)
T ss_pred HHHHH-----HHHHHHHhcCCCCCcC-HHHh-CCcccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 00000 0000001111111222 2333 333222222222211 11233445677877764 7888876 788
Q ss_pred HHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhc
Q psy8366 337 LVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLS 416 (513)
Q Consensus 337 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (513)
.....++..++.++.|++.||+|+|+.+..+..+..++..++.... ...+.+.......+.+.+.+. ..+.....+.
T Consensus 301 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~G~g~g~-~~~~~~~~~~ 377 (495)
T PRK14995 301 MLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD--FSTQQWQAWGLMALLGFSAAS-ALLASTSAIM 377 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhHHH-HHHHHHHHHH
Confidence 8889999999999999999999999988888777766665554432 112233333333344444332 3344456677
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy8366 417 EVFPLQVRGIASGITAASSSVVNFISTKTYINLTSW 452 (513)
Q Consensus 417 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 452 (513)
+..|+++++.+.++.++.+++|+.+|+.+.|.+.+.
T Consensus 378 ~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 378 AAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred hcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999988764
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=266.44 Aligned_cols=371 Identities=18% Similarity=0.261 Sum_probs=260.7
Q ss_pred HHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHH
Q psy8366 39 AQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILV 118 (513)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~ 118 (513)
...+..+..+++.....+..|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+.+..+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 88 (398)
T TIGR00895 21 LSFLIMLMDGYDLAAMGFAAPAIS------------AEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWS 88 (398)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHh------------hccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHH
Confidence 334445555666667778889998 89999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----
Q psy8366 119 GFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT---- 194 (513)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---- 194 (513)
.++.+++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|..+++.++..+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 168 (398)
T TIGR00895 89 ILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF 168 (398)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988888776554
Q ss_pred hHHHHHHhhhHHHHHHHH-HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccc
Q psy8366 195 DWRTTVLISAIFPILTMI-MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYT 273 (513)
Q Consensus 195 ~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (513)
+||+.|++.+++.++..+ ..+++||++++..++ +.++..+..++....... +. +.+..
T Consensus 169 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------~~--------~~~~~ 227 (398)
T TIGR00895 169 GWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQA------------EA--------QSALP 227 (398)
T ss_pred cceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccc------------cc--------ccccc
Confidence 899999998766655544 566788887654433 222222222211110000 00 00000
Q ss_pred hhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHH
Q psy8366 274 TDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVST 352 (513)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g 352 (513)
+++.+.+..+...+.+++++..+.......... ...........+.|.+.++.|.+... +.......++.+++.++.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (398)
T TIGR00895 228 EQKATQGTKRSVFKALFQGKTARITVLLWLLYF-MLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFG 306 (398)
T ss_pred ccccccchhhHHHHHHhcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000111222333444433333333222222 22233445566778777788888766 7788888999999999999
Q ss_pred HhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHH
Q psy8366 353 ITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITA 432 (513)
Q Consensus 353 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 432 (513)
++.||+++|+... ...+..+...++.... .+.+......++.+.+. ....+...++..|.+|++.|+++.|+.+
T Consensus 307 ~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 380 (398)
T TIGR00895 307 WLADRLGPRVTAL-LLLLGAVFAVLVGSTL----FSPTLLLLLGAIAGFFV-NGGQSGLYALMALFYPTAIRATGVGWAI 380 (398)
T ss_pred HHHhhcchHHHHH-HHHHHHHHHHHHHHHh----hCHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 9999999984433 3333333333332211 12333333333333333 3345666789999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy8366 433 ASSSVVNFISTKTYINL 449 (513)
Q Consensus 433 ~~~~~g~~~~~~~~g~l 449 (513)
.+..+|..++|.+.|.+
T Consensus 381 ~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 381 GIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHhHHhc
Confidence 99999999999998875
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=263.72 Aligned_cols=356 Identities=15% Similarity=0.132 Sum_probs=252.1
Q ss_pred HHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHH
Q psy8366 42 FLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFP 121 (513)
Q Consensus 42 ~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 121 (513)
+..+..+.......+.+|.+. +|+|.+.++.|++.+.+.+++.++++++|+++||+|||+++.++..+
T Consensus 10 ~~~~~~~~~~~~~~~~l~~~~------------~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 77 (382)
T PRK10091 10 LGTFGLGMAEFGIMGVLTELA------------HDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVAL 77 (382)
T ss_pred HHHHHHHhhHHHHHhChHHHH------------HHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHH
Confidence 344555566666778899999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh----HhHH
Q psy8366 122 FFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL----TDWR 197 (513)
Q Consensus 122 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----~~wr 197 (513)
.+++.+++++++|++.+++.|+++|++.+...+....++.|++++++|++++++...+..+|..+++.++.. .+||
T Consensus 78 ~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr 157 (382)
T PRK10091 78 CVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWR 157 (382)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHH
Confidence 999999999999999999999999999998888888999999999999999999998888888887776554 3999
Q ss_pred HHHHhhhHHHHHHHH-HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhh
Q psy8366 198 TTVLISAIFPILTMI-MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQ 276 (513)
Q Consensus 198 ~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (513)
+.|++.+++.++..+ ..+++||.++ +.+.+ .++
T Consensus 158 ~~f~~~~~~~~~~~~~~~~~lp~~~~----~~~~~-~~~----------------------------------------- 191 (382)
T PRK10091 158 YTFLLIAVFNIAVLASIYFWVPDIRD----EAKGG-LRE----------------------------------------- 191 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCc----ccccC-HHH-----------------------------------------
Confidence 999999988776665 4455777532 10000 000
Q ss_pred cchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhhhHHHHh
Q psy8366 277 RKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGSFVSTIT 354 (513)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l 354 (513)
. ++.+++++ .+.... ..... ..+......|.+.++. ..|++... +......+++.++++++.+++
T Consensus 192 -------~-~~~~~~~~-~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l 258 (382)
T PRK10091 192 -------Q-FHFLRSPA-PWLIFA---ATMFG-NAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRL 258 (382)
T ss_pred -------H-HHHhcChH-HHHHHH---HHHHH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHhee
Confidence 0 11111211 111111 11111 1112222334444554 57888776 788888999999999999999
Q ss_pred hcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHH
Q psy8366 355 VNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAAS 434 (513)
Q Consensus 355 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 434 (513)
.||+++|+.+..+..+.+++.+++.... +..+.......+...+......+.......+..|++.++.+ ..+..
T Consensus 259 ~~r~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 332 (382)
T PRK10091 259 SGRYSPLRIAAVTDFIIVLALLMLFFFG----GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIA 332 (382)
T ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHH
Confidence 9999999998888777776665544332 12222222222222222112222222344455455555554 34677
Q ss_pred HHHHHHHHHHHhhhhhhc-cchhHHHHHHHHHHHHHHhhee
Q psy8366 435 SSVVNFISTKTYINLTSW-FGLHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 435 ~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~ 474 (513)
.++|.++||.+.|.+.|. .+|+..+.+.++++++......
T Consensus 333 ~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 333 FNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred HHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence 889999999999999995 5788888877766666554433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=271.91 Aligned_cols=378 Identities=16% Similarity=0.188 Sum_probs=261.2
Q ss_pred ccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHH
Q psy8366 49 MAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWIL 128 (513)
Q Consensus 49 ~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 128 (513)
++....+...|.+. +++|.++.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++
T Consensus 8 ~~~~~~~~~~~~~~------------~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 75 (399)
T TIGR00893 8 LDRANLSFAAPMLQ------------EDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGL 75 (399)
T ss_pred HHHHhhhHhHHHHH------------HhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHH
Confidence 34455667778888 899999999999999999999999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHhhh
Q psy8366 129 LYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLISA 204 (513)
Q Consensus 129 ~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~ 204 (513)
++++++++.++++|+++|++.+...+....++.|++|+++|++.+++......+|.++++.++..+ +||+.|++.+
T Consensus 76 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (399)
T TIGR00893 76 QAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEG 155 (399)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988887653 9999999998
Q ss_pred HHHHHHHHH-HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhh
Q psy8366 205 IFPILTMIM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLS 283 (513)
Q Consensus 205 ~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (513)
++.++..+. .++.||+|+.. +...++.++...+ ....+ ..+.++++. ...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---------------~~~~~---------~~~~~~~~~---~~~ 206 (399)
T TIGR00893 156 VLGIIWGVLWLKFIPDPPQKA--KWLTEEEKYIVVG---------------GLLAE---------QQGKGPSTP---KKY 206 (399)
T ss_pred HHHHHHHHHhhheecCCCCcc--ccCCHHHHhhcch---------------hhccc---------cccccccCC---Ccc
Confidence 888776664 44466655311 0001110000000 00000 000000000 011
Q ss_pred hhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCc
Q psy8366 284 KLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKR 361 (513)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 361 (513)
+ .+..++++..+ . .....+...........+.|.+++ ..|.+... +.......++.+++.++.+++.||++||
T Consensus 207 ~-~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 281 (399)
T TIGR00893 207 Q-IKELLKDRRVW---G-LALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRR 281 (399)
T ss_pred c-hHHHhcCHHHH---H-HHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1 22223332222 2 222222222334455667777775 46777665 7788888999999999999999999998
Q ss_pred hHHH-HhhHHHHHHHHHHHHHHHh-cCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHH
Q psy8366 362 GMTL-WSTGINTFFTLMLSICAMN-LQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVN 439 (513)
Q Consensus 362 ~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 439 (513)
+... .......++.+........ ...+............. ...+..+..+++..|.+|++.|+++.|+.+...++|+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ 360 (399)
T TIGR00893 282 GKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGF-FGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGG 360 (399)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH-hchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhh
Confidence 6211 1111111111111111000 10112222222222222 2233567788899999999999999999999999999
Q ss_pred HHHHHHhhhhhhccc-hhHHHHHHHHHHHHHHhhe
Q psy8366 440 FISTKTYINLTSWFG-LHGTLFIYTLVSFLGFIYI 473 (513)
Q Consensus 440 ~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~ 473 (513)
.++|.+.|.+.+..| +...+.+.+++.+++.+..
T Consensus 361 ~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 361 IVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred hhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999988 8888888777777665543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=266.79 Aligned_cols=359 Identities=13% Similarity=0.116 Sum_probs=260.2
Q ss_pred HHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHH
Q psy8366 39 AQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILV 118 (513)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~ 118 (513)
...+..+..+......++.+|.+. +++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+
T Consensus 11 ~~~~~~~~~~~~~~~~g~~~~~i~------------~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~ 78 (394)
T PRK03699 11 ISFLSYALTGALVIVTGMVMGPIA------------EYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFG 78 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHH------------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 334555666666777888899999 89999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh-----
Q psy8366 119 GFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL----- 193 (513)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----- 193 (513)
.++.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++..+.......+|..+++.+...
T Consensus 79 ~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 158 (394)
T PRK03699 79 FALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARS 158 (394)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999998888888887777766443
Q ss_pred HhHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccc
Q psy8366 194 TDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYT 273 (513)
Q Consensus 194 ~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (513)
.+||+.|.+.+++.++..++.++ .+.|+. +++.++
T Consensus 159 ~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~---~~~~~~----------------------------------------- 193 (394)
T PRK03699 159 IEWYWVYACIGLVYVAIFILTLF-SEFPAL---GKHAPK----------------------------------------- 193 (394)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHh-cCCccc---cccCcc-----------------------------------------
Confidence 48999999988877766554433 222210 000000
Q ss_pred hhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhhhHH
Q psy8366 274 TDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGSFVS 351 (513)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~ 351 (513)
+++.. .+...+ +.. +...+..+........+..|.|.+++ ..|++..+ +.......++..+++++.
T Consensus 194 ~~~~~-------~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~ 261 (394)
T PRK03699 194 ADKPV-------AKEKWG----IGV-LFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIF 261 (394)
T ss_pred ccCcc-------ccccCC----hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHH
Confidence 00000 000001 111 11222222222233455678888885 57888776 777788889999999999
Q ss_pred HHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHH
Q psy8366 352 TITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGIT 431 (513)
Q Consensus 352 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 431 (513)
++++||+++|+.+.....+..+...++.... +.+...+.....+... .+..+...+...+..| +.++...|..
T Consensus 262 g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~~-~~~~~~~g~~ 334 (394)
T PRK03699 262 SFIVRFFDLQRILTVLAGLALVLMYLFVNTD-----DPSHLLYAILGLGFFS-SAIYTTIITLGSQQTK-VASPKLVNFI 334 (394)
T ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHcC-----CchHHHHHHHHHHHHH-HHHHHHHHHHHHHHcc-CCCHHHHHHH
Confidence 9999999999988776665555443333211 2222222223333222 2344555556667665 4567788999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhhe
Q psy8366 432 AASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYI 473 (513)
Q Consensus 432 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 473 (513)
....++|..++|.+.|.+.+..|++..+++.+++++++.+.+
T Consensus 335 ~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 335 LTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999988888877777765543
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=260.52 Aligned_cols=341 Identities=15% Similarity=0.162 Sum_probs=243.8
Q ss_pred ccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhc
Q psy8366 53 MPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLA 132 (513)
Q Consensus 53 ~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 132 (513)
...+.+|.+. +++|+++++.++..+++.++..+++++.|+++||+|||++++.+.++.+++.++++++
T Consensus 38 ~~~~~l~~~~------------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~ 105 (394)
T PRK10213 38 LPVSLLTPMA------------QDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA 105 (394)
T ss_pred HHHhhHHHHH------------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888 8999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHHHH
Q psy8366 133 ETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLISAIFPI 208 (513)
Q Consensus 133 ~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~ 208 (513)
++++.+++.|+++|++.+...+...+++.|++|+++|+++.++...+.++|..+++.++..+ +||+.|++.+++.+
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~ 185 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGV 185 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888877776654 99999999887776
Q ss_pred HHHHH-HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhh
Q psy8366 209 LTMIM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLN 287 (513)
Q Consensus 209 ~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (513)
+..+. ....||+|+. + ++. ..+..+
T Consensus 186 ~~~l~~~~~~p~~~~~-----~-~~~------------------------------------------------~~~~~~ 211 (394)
T PRK10213 186 LCIFWIIKSLPSLPGE-----P-SHQ------------------------------------------------KQNTFR 211 (394)
T ss_pred HHHHHHHHHCCCCCcc-----c-ccc------------------------------------------------hhHHHH
Confidence 65543 3346665421 0 000 000012
Q ss_pred hhccCCchhHHHHHHHHHHHHHhhchhchhhh-HHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHH
Q psy8366 288 YLVRPEIVRPFIMIMILFFITIIASLQPMRPF-LVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTL 365 (513)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 365 (513)
.+ +++..+........... .......+ .|.+.++.|++... +......+++.+++.++.+++.||.+ |+.+.
T Consensus 212 ~l-~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~ 285 (394)
T PRK10213 212 LL-QRPGVMAGMIAIFMSFA----GQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALA 285 (394)
T ss_pred Hh-cCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHH
Confidence 22 22212222221111111 12222344 46666778888776 78788889999999999999999954 44444
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8366 366 WSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKT 445 (513)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 445 (513)
.+..+..+....+.... .+.+.......+.+.+. ....+...+.+.+..| ++++.+.++.....++|..+||.+
T Consensus 286 ~~~~~~~~~~~~l~~~~----~~~~~~~~~~~l~G~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l 359 (394)
T PRK10213 286 GAPLVLAVSALVLTLWG----SDKIVATGVAIIWGLTF-ALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAI 359 (394)
T ss_pred HHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333322222222 13333333333333333 2334444456777777 557788888888889999999999
Q ss_pred hhhhhhccchhHHHHHHHHHHHHHHh
Q psy8366 446 YINLTSWFGLHGTLFIYTLVSFLGFI 471 (513)
Q Consensus 446 ~g~l~~~~g~~~~~~~~~~~~~~~~~ 471 (513)
.|.+.|..|+...+...+++.++..+
T Consensus 360 ~G~l~~~~g~~~~~~~~~~~~~~~~~ 385 (394)
T PRK10213 360 GGYALDNIGLTSPLMLSGTLMLLTAL 385 (394)
T ss_pred HHHHHhccChhhHHHHHHHHHHHHHH
Confidence 99999999988777776666555444
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=265.56 Aligned_cols=348 Identities=18% Similarity=0.207 Sum_probs=246.2
Q ss_pred hhcccccccchhhhh-hcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHH
Q psy8366 46 SLGMAFGMPTVVVGV-LDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFL 124 (513)
Q Consensus 46 ~~~~~~~~~~~~~p~-i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~ 124 (513)
...+......+.+|. +. +++|.|+.+.|++.+++.+++.+++++.|+++||+|||++++.+.++.++
T Consensus 26 ~~~~~~~~~~~~l~~~i~------------~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 93 (399)
T PRK05122 26 ISYLTIGLPLAVLPGYVH------------DQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCAL 93 (399)
T ss_pred HHHHHHHHHHHHHHHHHH------------HhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHH
Confidence 334445556677886 45 78999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHhc--------hhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh---
Q psy8366 125 GWILLYLA--------ETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL--- 193 (513)
Q Consensus 125 ~~~~~~~~--------~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~--- 193 (513)
+.+++.++ .+++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..+++.++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~ 173 (399)
T PRK05122 94 SGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH 173 (399)
T ss_pred HHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence 87766553 2577899999999999999999999999999999999999999888877777776666544
Q ss_pred -HhHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhcccccccccccc
Q psy8366 194 -TDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEY 272 (513)
Q Consensus 194 -~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (513)
.+||+.+++.+++.++..+.....|++++ .+++..+
T Consensus 174 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---------------------------------------- 210 (399)
T PRK05122 174 WGGLAGLGLLIMLLALLGLLLARPRPAVPP---VKGERLP---------------------------------------- 210 (399)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCCCCCC---CCccchh----------------------------------------
Confidence 49999988776665544333322333211 0000000
Q ss_pred chhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchhHHHHHHHHHHHHHhhhHHH
Q psy8366 273 TTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVST 352 (513)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 352 (513)
.+...++ . +.......+... .......+.+.++.+.|.+ ..+.......++.+++.++.+
T Consensus 211 -------------~~~~~~~-~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g 270 (399)
T PRK05122 211 -------------FRRVLGR-V-WPYGMGLALASI----GFGTIATFITLYYAARGWD-GAALALTLFGVAFVGARLLFG 270 (399)
T ss_pred -------------HHHHHHH-H-HHHHHHHHHHHH----HHHHHHHHHHHHHHHcccc-cchHHHHHHHHHHHHHHHHHH
Confidence 0000000 0 000111111111 1223345666666666653 235556677888899999999
Q ss_pred HhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHH
Q psy8366 353 ITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITA 432 (513)
Q Consensus 353 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 432 (513)
++.||+++|+.+..+..+.+++..++.... +.+...+...+.+.+. ....+.......|..|+++|+++.|+.+
T Consensus 271 ~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 344 (399)
T PRK05122 271 NLINRLGGLRVAIVSLLVEILGLLLLWLAP-----SPWMALIGAALTGFGF-SLVFPALGVEAVKRVPPQNRGAALGAYS 344 (399)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999988888777777665554432 3333333333333333 2334454466778889999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhhee
Q psy8366 433 ASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 433 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 474 (513)
...++|..+++.+.|.+.+..|++..+.+.+++++++.++..
T Consensus 345 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (399)
T PRK05122 345 VFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTW 386 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888887777766544
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-32 Score=255.81 Aligned_cols=355 Identities=13% Similarity=0.152 Sum_probs=248.4
Q ss_pred ccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHH
Q psy8366 49 MAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWIL 128 (513)
Q Consensus 49 ~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 128 (513)
......+++.+.+.+ .|+|+|.+|.+++.+++.+++.++.++.|++.||+|+|+++.++.++.++.+++
T Consensus 48 ~~w~~~~~l~~~~~~-----------~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~ 116 (462)
T PRK15034 48 CVWMLFSAVTVNLNK-----------IGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVW 116 (462)
T ss_pred HHHHHHHHHHHHhhh-----------hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 345666777887762 489999999999999999999999999999999999999999999999999999
Q ss_pred HHhc-----hhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHH----HHHHhh-------
Q psy8366 129 LYLA-----ETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFI----IFLIYA------- 192 (513)
Q Consensus 129 ~~~~-----~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~----~~~l~~------- 192 (513)
++++ +|++.+++.|++.|++ +..++.....+++|+|+++||++.++.....++|..+ +|.+..
T Consensus 117 ~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~ 195 (462)
T PRK15034 117 LGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFL 195 (462)
T ss_pred HHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9987 8999999999999998 7789999999999999999999999997666666544 343221
Q ss_pred -----------hHhHHHHHHhhhHHHHHHHHHHHhc-cCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhh
Q psy8366 193 -----------LTDWRTTVLISAIFPILTMIMIAFI-PESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDT 260 (513)
Q Consensus 193 -----------~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (513)
..+||..+++..++.++..++.++. ++.|+ .+.+
T Consensus 196 G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~------------------------------- 241 (462)
T PRK15034 196 GVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRAS------------------------------- 241 (462)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccC-------------------------------
Confidence 2358888888888877776654443 33221 0000
Q ss_pred ccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHH
Q psy8366 261 NSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVL 339 (513)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~ 339 (513)
.++..+.+ |++..|...+ ..++.+.++..+..++|++.++ .++... .....+
T Consensus 242 ---------------------~~~~~~vl-k~~~~Wllsl----ly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l 294 (462)
T PRK15034 242 ---------------------IADQLPVL-QRLHLWLLSL----LYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFF 294 (462)
T ss_pred ---------------------HHHHHHHh-CCCchhHHHH----HHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHH
Confidence 01112222 3332232222 2233344455566778887765 333222 222344
Q ss_pred HHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcC-CCchhhHHHHHHHHHHHhccccchhhhhhccc
Q psy8366 340 TGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQ-WPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEV 418 (513)
Q Consensus 340 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (513)
..+...+.++++|+++||+|+++.+.+++....++...+........ .+.+.....+.......+.+ +...+-++.+.
T Consensus 295 ~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~g-ngsvfk~ip~~ 373 (462)
T PRK15034 295 GPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLG-SGSTFQMIAVI 373 (462)
T ss_pred HHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccc-chHHHHhhHHH
Confidence 56788889999999999999999998888777666544333221100 11222222222222333233 23334567777
Q ss_pred cch---------------------hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHHHHHhheeEE
Q psy8366 419 FPL---------------------QVRGIASGITAASSSVVNFISTKTYINLTSWFG-LHGTLFIYTLVSFLGFIYIYFY 476 (513)
Q Consensus 419 ~p~---------------------~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 476 (513)
+|+ ++.|.+.|+....+.+|+++.|.+.|...+..| +...++.+.+..+++..+.+.+
T Consensus 374 f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 374 FRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred HhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 764 267899999999999999999999999988876 6667888888888887777655
Q ss_pred c
Q psy8366 477 V 477 (513)
Q Consensus 477 ~ 477 (513)
.
T Consensus 454 y 454 (462)
T PRK15034 454 Y 454 (462)
T ss_pred h
Confidence 4
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=270.97 Aligned_cols=367 Identities=13% Similarity=0.065 Sum_probs=264.5
Q ss_pred ccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHH
Q psy8366 51 FGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLY 130 (513)
Q Consensus 51 ~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 130 (513)
.....+.+|.+. ++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+
T Consensus 33 ~~~~~~~~~~~~------------~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~ 100 (417)
T PRK10489 33 LGLLGVAVPVQI------------QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLA 100 (417)
T ss_pred HHHHHHHHHHHH------------HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHH
Confidence 344556788887 77888999999999999999999999999999999999999998888887766554
Q ss_pred h-----chhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHH
Q psy8366 131 L-----AETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVL 201 (513)
Q Consensus 131 ~-----~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~ 201 (513)
. .++++.+++.|+++|++.+...+...+++.|++|+++|+++.++...+.++|..+|+.++..+ +|++.|+
T Consensus 101 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~ 180 (417)
T PRK10489 101 LNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYG 180 (417)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHH
Confidence 2 567899999999999999888888899999999999999999999888888888888776554 8999999
Q ss_pred hhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhh
Q psy8366 202 ISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQ 281 (513)
Q Consensus 202 ~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (513)
+.++..++..+..+.+|++++.. +++.++.+ +.
T Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~-----------------~~---------------------------- 213 (417)
T PRK10489 181 LAAAGTFITLLPLLRLPALPPPP--QPREHPLR-----------------SL---------------------------- 213 (417)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCC--cccccchH-----------------HH----------------------------
Confidence 98887777666666777754310 00000000 00
Q ss_pred hhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh-cCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccC
Q psy8366 282 LSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT-FGLPMKS-EWVLVLTGILSITGSFVSTITVNKLG 359 (513)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g 359 (513)
... ++..++++..+...+....... ......+.|.+.++ .|.+... +.......++.+++.++.+++.||.+
T Consensus 214 ~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~ 287 (417)
T PRK10489 214 LAG-FRFLLASPVVGGIALLGGLLTM-----ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSAR 287 (417)
T ss_pred HHH-HHHHHcChHHHHHHHHHHHHHH-----HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 001 2223333322222222211111 12344567777776 7887766 78888889999999999999999987
Q ss_pred CchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHH
Q psy8366 360 KRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVN 439 (513)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 439 (513)
+++.+..+..+..++.+.+.... +.+...+...+.+.+. ....+...+++.|..|++.||+++|+.+...++|.
T Consensus 288 ~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 361 (417)
T PRK10489 288 PGLLMLLSTLGSFLAVGLFGLMP-----MWILAVLCLALFGYLS-AISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGD 361 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHccc-----hHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhH
Confidence 77777777766666655443321 2222222222332222 22234555788999999999999999999999999
Q ss_pred HHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeEEcccCCCCCHHHH
Q psy8366 440 FISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEI 488 (513)
Q Consensus 440 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (513)
.++|.+.|.+.+..|+...++..+++.++..++.....++.++++++|+
T Consensus 362 ~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (417)
T PRK10489 362 AIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPP 410 (417)
T ss_pred hHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 9999999999999998888887777766665555556677666655544
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-32 Score=270.12 Aligned_cols=394 Identities=19% Similarity=0.219 Sum_probs=283.2
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhcccccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEA 154 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~ 154 (513)
+.++.+.....+..+++++|..+|++++|+++||+|||++++.++++..++.+++++++|++.+++.|+++|++.++...
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 56777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH--hHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHH
Q psy8366 155 PIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT--DWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEE 232 (513)
Q Consensus 155 ~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~--~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~ 232 (513)
....+++|++++++|+.+..+ ......|+.+++.++.++ +||+.+++..++.++.++.+++.||+|+|+..+++.++
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~ 269 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDE 269 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHH
Confidence 999999999999999999999 666666666666665555 89999999999999888886677799999999999999
Q ss_pred HHHHHHHhhCCCchhh-HHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCC-chhHHHHHHHHHHHHHh
Q psy8366 233 AERSLRWVRGWSKKHK-VRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPE-IVRPFIMIMILFFITII 310 (513)
Q Consensus 233 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 310 (513)
+.+.++++.+.++... ............ .++....++... +..+++.+ .++........++...
T Consensus 270 a~~~l~~~a~~n~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~-~~~l~~~~~l~~~~~~~~~~~~~~~- 335 (521)
T KOG0255|consen 270 AIKILKKIAKLNGRKLSVKELLRLELLLR------------PLKLLFTEPKIS-FLDLFRTPRLRYRTLYLLFIWFVFS- 335 (521)
T ss_pred HHHHHHHHHhhcCCCCCcHHHHHHHHHhh------------HhhhhccCCCCc-hhhhhcCHHHHHHHHHHHHHHHHHh-
Confidence 9998888765442111 111111110000 000001011122 33333333 3444444333332111
Q ss_pred hchhchhhhHHHHHHhcCCCchhHHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCch
Q psy8366 311 ASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGW 390 (513)
Q Consensus 311 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (513)
..|....+...+++.+.+......+.....+....+...|+.|||.....+..+..++++...+.... ...+
T Consensus 336 ------~~y~gl~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 407 (521)
T KOG0255|consen 336 ------LVYYGLSLNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDD--LGGW 407 (521)
T ss_pred ------HHHHhhhhhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc--chhH
Confidence 12333333333444555666666677888888888999999999999999999999998888887621 1111
Q ss_pred hhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHH
Q psy8366 391 IPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGF 470 (513)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 470 (513)
...+...+..++.+.++... +.+..|++|+..|..+.+..+....++++++|.+.-.... ......+.+++....+..
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~ 485 (521)
T KOG0255|consen 408 LHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLG 485 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHH
Confidence 33334444444444444444 7899999999999999999999999999999987644433 222222333466666666
Q ss_pred hheeEEcccCCCCCHHHHHHHHh
Q psy8366 471 IYIYFYVPETEDRTLQEILDFFA 493 (513)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~ 493 (513)
+++..+.||++++.+.+...+.+
T Consensus 486 ~~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 486 LLSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred HHHHhcCcccCCCCCchhHHHHH
Confidence 66667889999988766544433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=259.29 Aligned_cols=365 Identities=13% Similarity=0.001 Sum_probs=254.0
Q ss_pred hHHHHHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcc
Q psy8366 31 CSQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIG 110 (513)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G 110 (513)
.+.++......+..+...+......+.+|.+. +++|.|..+.++..+.+.+++.+++++.|+++||+|
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g 76 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVV------------EDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIG 76 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHH------------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444444445555555566677778888888 899999999999999999999999999999999999
Q ss_pred hhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHH
Q psy8366 111 RKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLI 190 (513)
Q Consensus 111 rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l 190 (513)
||+++.++..+.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|++..++......+|..+++.+
T Consensus 77 ~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 156 (406)
T PRK15402 77 RRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLV 156 (406)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888899999999999999999888887777777777766
Q ss_pred hhh----HhHHHHHHhhhHHHHHHHHH-HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccc
Q psy8366 191 YAL----TDWRTTVLISAIFPILTMIM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATL 265 (513)
Q Consensus 191 ~~~----~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (513)
+.. .+||+.|++.+++.++..+. .+..||+++.. +++.+.++ .
T Consensus 157 ~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--------------------~--------- 204 (406)
T PRK15402 157 GAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRV---GEKLSLKE--------------------L--------- 204 (406)
T ss_pred HHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cccccHHH--------------------H---------
Confidence 544 49999999988888776664 44567764210 00000000 0
Q ss_pred cccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHH-HhcCCCchh-HHHHHHHHHH
Q psy8366 266 YVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIF-RTFGLPMKS-EWVLVLTGIL 343 (513)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~ 343 (513)
..+ .+..++++..+.......+... .......+.|.++ +..|.+... +.......++
T Consensus 205 ----------------~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~ 263 (406)
T PRK15402 205 ----------------GRD-YKLVLKNRRFVAGALALGLVSL----PLLAWIALSPVILISGEQLSSYEYGLLQVPVFGA 263 (406)
T ss_pred ----------------HHH-HHHHHcCcHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 011 2233333322222222211111 1122334456665 457887765 6666667778
Q ss_pred HHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhh
Q psy8366 344 SITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQV 423 (513)
Q Consensus 344 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 423 (513)
.+++.++.+++.||+++|+.+..+..+..++..++...........+.......+.+.+.+ ...+......... ++++
T Consensus 264 ~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~-~~~~~~~~~~~~~-~~~~ 341 (406)
T PRK15402 264 LIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIG-LANAGLYRLTLFS-SDVS 341 (406)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHH-HHhhhHHHHHhhh-cccc
Confidence 8899999999999999999988887777766666655431111122222222333333332 2233333333333 4489
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHH
Q psy8366 424 RGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIY 462 (513)
Q Consensus 424 ~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 462 (513)
+|++.++.+....++..+|+.+.+.+.+..+.....+..
T Consensus 342 ~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~ 380 (406)
T PRK15402 342 KGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFN 380 (406)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHH
Confidence 999999999999999999999999998887755433333
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-32 Score=259.45 Aligned_cols=344 Identities=17% Similarity=0.187 Sum_probs=242.8
Q ss_pred cccccchhhhh-hcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHH
Q psy8366 50 AFGMPTVVVGV-LDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWIL 128 (513)
Q Consensus 50 ~~~~~~~~~p~-i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 128 (513)
..+...+.+|. +. +++|.|..+.|++.+++.+++.++++++|+++||+||||+++.+.+...++.+.
T Consensus 30 ~~~~~~p~l~~~l~------------~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~ 97 (392)
T PRK12382 30 TVGLPLPVIPLFVH------------HDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLA 97 (392)
T ss_pred HHHHHhhhhhHHHH------------HhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 35555677775 45 789999999999999999999999999999999999999999998887766543
Q ss_pred HH---h-----chhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh----HhH
Q psy8366 129 LY---L-----AETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL----TDW 196 (513)
Q Consensus 129 ~~---~-----~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----~~w 196 (513)
.. . .++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++.. .+|
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 177 (392)
T PRK12382 98 YLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGF 177 (392)
T ss_pred HHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 32 1 35889999999999999998888888999999999999999999999888888887777654 489
Q ss_pred HHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhh
Q psy8366 197 RTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQ 276 (513)
Q Consensus 197 r~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (513)
|+.+.+..+..++.+......||.++. ++++.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------------------------------- 210 (392)
T PRK12382 178 AALALTTMVLPLLAWAFNGTVRKVPAH---AGERPS-------------------------------------------- 210 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCC---cccCch--------------------------------------------
Confidence 987776555444333322223332110 000000
Q ss_pred cchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchhHHHHHHHHHHHHHhhhHHHHhhc
Q psy8366 277 RKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVN 356 (513)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d 356 (513)
..+..+.+++ .... ..+. .........+.+.++++.+.+. .+......+++.++++++.|++.|
T Consensus 211 -----~~~~~~~~~~-----~~~~-~~l~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~~ 274 (392)
T PRK12382 211 -----LWSVVGLIWK-----PGLG-LALQ----GVGFAVIGTFVSLYFASKGWAM-AGFTLTAFGGAFVLMRVLFGWMPD 274 (392)
T ss_pred -----HHHHHHHHHH-----hHHH-HHHH----HHHHhHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000111111 1111 1111 1112233456666776666542 355556677788899999999999
Q ss_pred ccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHH
Q psy8366 357 KLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSS 436 (513)
Q Consensus 357 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 436 (513)
|+++|+.+..+..+..++.+++.... +.+.......+.+.+. ....+...+...|.+|+++||++.|+.++...
T Consensus 275 r~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 348 (392)
T PRK12382 275 RFGGVKVAIVSLLVETVGLLLLWLAP-----TAWVALAGAALTGAGC-SLIFPALGVEVVKRVPSQVRGTALGGYAAFQD 348 (392)
T ss_pred hcCCCeehHHHHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 99999998888877777666544322 2333333333333332 22345555677888899999999999999999
Q ss_pred HHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhhee
Q psy8366 437 VVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 437 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 474 (513)
+|..++|.+.|.+.+..||+..+.+.+++.+++.++.+
T Consensus 349 ~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 349 IAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888877766544
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=265.17 Aligned_cols=386 Identities=14% Similarity=0.137 Sum_probs=253.4
Q ss_pred hcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHH
Q psy8366 47 LGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGW 126 (513)
Q Consensus 47 ~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 126 (513)
............|.+. + +|+++++.+++.+++.++..+++++.|+++||+|||+.+.++.++.+++.
T Consensus 39 ~~~~~~~~~~~~p~~~------------~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~ 105 (438)
T TIGR00712 39 YYLVRKNFALAMPYLV------------E-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVM 105 (438)
T ss_pred HHHHhccHHhhhHHHH------------H-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHH
Confidence 3334444455677776 4 59999999999999999999999999999999999999999999999998
Q ss_pred HHHHhc----hhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhh-----hHhHH
Q psy8366 127 ILLYLA----ETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYA-----LTDWR 197 (513)
Q Consensus 127 ~~~~~~----~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~-----~~~wr 197 (513)
+++++. ++++.+.+.|++.|++.+...+.....+.|++|+++|++++++.+.+..+|..+++.+.. ..+||
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~ 185 (438)
T TIGR00712 106 LLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWH 185 (438)
T ss_pred HHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhH
Confidence 888764 467888899999999999999989999999999999999999999999988888765533 24899
Q ss_pred HHHHhhhHHHHHHHH-HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhh
Q psy8366 198 TTVLISAIFPILTMI-MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQ 276 (513)
Q Consensus 198 ~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (513)
+.|++.+++.++..+ ..+++||+|+....+.. ++.++ +. .+. . ..+.+.+.
T Consensus 186 ~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~-----~~~-~-------------------~~~~~~~~ 237 (438)
T TIGR00712 186 AALYFPAICAIIVALFAFAMMRDTPQSCGLPPI-EEYRN--DY-----PDD-Y-------------------NEKAEQEL 237 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCc-hhccc--cc-----ccc-c-------------------cccccccc
Confidence 999999988877655 55667887653110000 00000 00 000 0 00000000
Q ss_pred cchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh-cCCCchh-HHHHHHHHHHHHHhhhHHHHh
Q psy8366 277 RKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT-FGLPMKS-EWVLVLTGILSITGSFVSTIT 354 (513)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l 354 (513)
+ ....+.+..++++..+.......+.. ...+....|.|.++++ .|++... +....+..+.++++.++.|++
T Consensus 238 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l 310 (438)
T TIGR00712 238 -T--AKEIFMQYVLPNKLLWYIAIANVFVY----LLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 310 (438)
T ss_pred -c--hHHHHHHHHccCchHHHHHHHHHHHH----HHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00111222344443333322222222 2233455788888875 6887765 677788889999999999999
Q ss_pred hcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHH
Q psy8366 355 VNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAAS 434 (513)
Q Consensus 355 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 434 (513)
+||+++++....+.....+..+...........+.+.........+... .+..........|.+|++.|+++.|+.+..
T Consensus 311 ~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 389 (438)
T TIGR00712 311 SDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLF 389 (438)
T ss_pred HHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchH
Confidence 9999654322223222222111111111111112222222222222211 121122224567899999999999999999
Q ss_pred HHHHH-HHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeEEcccCC
Q psy8366 435 SSVVN-FISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETE 481 (513)
Q Consensus 435 ~~~g~-~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (513)
.++++ +++|.+.|.+.|..|+...+.+..++.+++.+..+..++|.|
T Consensus 390 ~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 390 GYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 88875 689999999999999999888888777777666555555543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-32 Score=265.90 Aligned_cols=359 Identities=14% Similarity=0.114 Sum_probs=243.9
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhc--hhHHHHHHHHHHhhcccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLA--ETVSIIMLGTVCMGLSVGCC 152 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~g~~~~ 152 (513)
.|++++..+.|++.+++.+++.+++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+..
T Consensus 69 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~ 148 (465)
T TIGR00894 69 PNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSV 148 (465)
T ss_pred CCCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccc
Confidence 3899999999999999999999999999999999999999999999999999887554 56888999999999999999
Q ss_pred ccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH-----hHHHHHHhhhHHHHHHHHHHH-hccCchhhhhh
Q psy8366 153 EAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT-----DWRTTVLISAIFPILTMIMIA-FIPESPTWLVS 226 (513)
Q Consensus 153 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-----~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~ 226 (513)
.+....++.|++|+++|++++++...+..+|..+++.++..+ +||+.|++.+++.++..++++ +.+|+|+...
T Consensus 149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~- 227 (465)
T TIGR00894 149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP- 227 (465)
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC-
Confidence 999999999999999999999999999999988888776543 899999999998877766544 4567664211
Q ss_pred cCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHH
Q psy8366 227 KGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFF 306 (513)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (513)
...++.++..++ .. + +..++.++ ..+ ++.+++++. ++...+..
T Consensus 228 -~~~~~~~~~i~~-------------------~~--------~-~~~~~~~~---~~~-~~~~~~~~~----~~~~~~~~ 270 (465)
T TIGR00894 228 -CISKFEKKYINS-------------------SL--------Q-GQKGSTRQ---SLP-IKAIPKSLP----VWAIWFAI 270 (465)
T ss_pred -CCCHHHHHHHHh-------------------hc--------c-cccCCCCC---CCC-HHHHhcCHH----HHHHHHHH
Confidence 111111110000 00 0 00000000 111 333333322 22223333
Q ss_pred HHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHH--------HHhhHHHHHHHH
Q psy8366 307 ITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMT--------LWSTGINTFFTL 376 (513)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~--------~~~~~~~~~~~~ 376 (513)
+......+.+..|+|.+++ ..|++... ++...+..++.+++.++.|+++||+++|+.. ..+......+..
T Consensus 271 ~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (465)
T TIGR00894 271 FGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIF 350 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3344445666788998886 47888776 7888888999999999999999987644221 111111111111
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcc---
Q psy8366 377 MLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWF--- 453 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~--- 453 (513)
.+.. . ....+.+..+..+.+.+.+. ....+.......|..| +.+|.+.|+.++.+.+++.++|.+.|.+.+..
T Consensus 351 ~~~~-~-~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~ 426 (465)
T TIGR00894 351 AYAL-P-YLSAAFYLTIIILTLANAVS-SGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKN 426 (465)
T ss_pred HHHH-H-HcCCchHHHHHHHHHHHHHh-hhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCch
Confidence 1111 1 01112222222232222222 2223334445567766 58999999999999999999999999988753
Q ss_pred chhHHHHHHHHHHHHHHhheeE
Q psy8366 454 GLHGTLFIYTLVSFLGFIYIYF 475 (513)
Q Consensus 454 g~~~~~~~~~~~~~~~~~~~~~ 475 (513)
+|...|.+.++..+++.++...
T Consensus 427 ~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 427 VWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHeee
Confidence 3777888888888887765543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-31 Score=256.21 Aligned_cols=358 Identities=15% Similarity=0.152 Sum_probs=252.1
Q ss_pred hhhcccccccchhhhhhcccccccccccCCCCcccchhh-----HHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHh
Q psy8366 45 FSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQ-----SSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVG 119 (513)
Q Consensus 45 ~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~-----~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~ 119 (513)
+..++......+.+|.+. +++|++..+ .|++.+++.++..++++++|+++||+|||+++..+.
T Consensus 24 ~~~~~~~~~~~~~l~~~~------------~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 91 (408)
T PRK09874 24 FLTGAAFSLVMPFLPLYV------------EQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSA 91 (408)
T ss_pred HHHHHHHHHhhhhHHHHH------------HHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHH
Confidence 333455556678889988 778887654 489999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh----Hh
Q psy8366 120 FPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL----TD 195 (513)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----~~ 195 (513)
++.+++.+++.++++++.+++.|++.|++.+ ..+....++.|++|+++|+++.++...+..+|..+++.++.. .+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 170 (408)
T PRK09874 92 LGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG 170 (408)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999865 567778889999999999999999999888888887777654 49
Q ss_pred HHHHHHhhhHHHHHHHHH-HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccch
Q psy8366 196 WRTTVLISAIFPILTMIM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTT 274 (513)
Q Consensus 196 wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (513)
||+.|++.+++.++..+. .+++||+++. .++++..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--------------------------------------- 207 (408)
T PRK09874 171 LRPVFFITASVLFLCFLVTLFCIRENFQP----VSKKEMLH--------------------------------------- 207 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccc----ccchhhhH---------------------------------------
Confidence 999999998887766664 4456664321 00000000
Q ss_pred hhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCch-----hHHHHHHHHHHHHHhhh
Q psy8366 275 DQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMK-----SEWVLVLTGILSITGSF 349 (513)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~ 349 (513)
.++..+.+++++..+........... .......+.+.+..+.+.+.. .+....+.+++.+++.+
T Consensus 208 -------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~ 276 (408)
T PRK09874 208 -------MREVVTSLKNPKLVLSLFVTTLIIQV----ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAP 276 (408)
T ss_pred -------HHHHHHhCcCCchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 00002222233222222211111111 122233445555544322221 13444566778888899
Q ss_pred HHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHH
Q psy8366 350 VSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASG 429 (513)
Q Consensus 350 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 429 (513)
..|++.||++||+.+..+..+..++.+.+.... +.+...+...+.+.+. ....+...+...+..|++.+|+.++
T Consensus 277 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~~ 350 (408)
T PRK09874 277 RLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ-----TPLQLGILRFLLGAAD-GALLPAVQTLLVYNSSNQIAGRIFS 350 (408)
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHhhh-HhhHHHHHHHHHHhCCcccceeeeh
Confidence 999999999999988887776665554443322 3333333333333333 2344555567778888899999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeE
Q psy8366 430 ITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYF 475 (513)
Q Consensus 430 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 475 (513)
+.+....+|..++|.+.|.+.+..|++..|.+.+++.+++.++.+.
T Consensus 351 ~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 351 YNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888887765543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=252.89 Aligned_cols=341 Identities=11% Similarity=0.073 Sum_probs=249.5
Q ss_pred cccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHH
Q psy8366 48 GMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWI 127 (513)
Q Consensus 48 ~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 127 (513)
.+......+.+|.+. .+++.++.+.+++.+++.++..++++++|+++||+|||++++.+.++.+++.+
T Consensus 12 ~~~~~~~~~~~~~~~------------~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~ 79 (365)
T TIGR00900 12 LIGTAITQVALPLYV------------LAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVA 79 (365)
T ss_pred HHHHHHHHHHHHHHH------------HHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHH
Confidence 344555567788887 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHhch-----hHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----hHHH
Q psy8366 128 LLYLAE-----TVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----DWRT 198 (513)
Q Consensus 128 ~~~~~~-----~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~ 198 (513)
+..+++ +++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+.+..+|.++++.++..+ +||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~ 159 (365)
T TIGR00900 80 VLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKW 159 (365)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 888888 9999999999999999999999999999999999999999999999999988888776554 9999
Q ss_pred HHHhhhHHHHHHHHHHHhc--cCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhh
Q psy8366 199 TVLISAIFPILTMIMIAFI--PESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQ 276 (513)
Q Consensus 199 ~f~~~~~~~~~~~~~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (513)
.|++.++..++..+..+.+ ||+++ +++.+..++. ..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----------------~~~--------------------- 198 (365)
T TIGR00900 160 AIWVDAVGFAISALLIVSVRIPELAA----SEIQALSNAV----------------LRD--------------------- 198 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCC----ccccccchhH----------------HHH---------------------
Confidence 9999887776665544433 33221 0000000000 000
Q ss_pred cchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh-cCCCchh-HHHHHHHHHHHHHhhhHHHHh
Q psy8366 277 RKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT-FGLPMKS-EWVLVLTGILSITGSFVSTIT 354 (513)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l 354 (513)
.... ++.+++++..+.......+...... .....+.|.+.++ .|.+... +.......++.+++.++.+++
T Consensus 199 ----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 270 (365)
T TIGR00900 199 ----TREG-IKFVLKNPLLRTLLLLALLFNLVFA---PAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLL 270 (365)
T ss_pred ----HHhH-HHHHHcCcHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011 3334444433333332222222111 1222566777664 7777766 788888899999999999999
Q ss_pred hcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHH
Q psy8366 355 VNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAAS 434 (513)
Q Consensus 355 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 434 (513)
.||.+||+.+..+..+.+++...+.... + +.+...+...+.+.+. ....+...++..|..|+++|+++.|+.+..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 345 (365)
T TIGR00900 271 GRYFKRMALMTGAIFVIGLAILVVGLTP---P-NFPLFLVLWFAIGVGY-GPINVPQGTLLQRRVPAELLGRVFGAQFSL 345 (365)
T ss_pred HHHhchhHHHHHHHHHHHHHHHHHHhhc---h-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999988877666666655554432 1 1233333333333333 334566678899999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhccc
Q psy8366 435 SSVVNFISTKTYINLTSWFG 454 (513)
Q Consensus 435 ~~~g~~~~~~~~g~l~~~~g 454 (513)
.+++..++|.+.|.+.|..|
T Consensus 346 ~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 346 SHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999988654
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=263.25 Aligned_cols=362 Identities=13% Similarity=0.123 Sum_probs=245.1
Q ss_pred ccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHH
Q psy8366 49 MAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWIL 128 (513)
Q Consensus 49 ~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 128 (513)
++....++..|.+. +++|++..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++
T Consensus 9 ~~~~~~~~~~~~~~------------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 76 (379)
T TIGR00881 9 LVRKNFALAMPYLV------------EEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF 76 (379)
T ss_pred HhHHhhhhhhHHHH------------HHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHH
Confidence 45556667788888 899999999999999999999999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHH-Hhh----hHhHHHHHHhh
Q psy8366 129 LYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFL-IYA----LTDWRTTVLIS 203 (513)
Q Consensus 129 ~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~-l~~----~~~wr~~f~~~ 203 (513)
++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|..+++. ++. ..+||+.|++.
T Consensus 77 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (379)
T TIGR00881 77 FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVP 156 (379)
T ss_pred HHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888883 433 33999999998
Q ss_pred hHHHHHHHH-HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhh
Q psy8366 204 AIFPILTMI-MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQL 282 (513)
Q Consensus 204 ~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (513)
+++.++..+ ..++.||+|+....+...++.. ++. +...++++++....
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~---------------------~~~~~~~~~~~~~~ 205 (379)
T TIGR00881 157 GIIAIIVSLICFLLLRDSPQSCGLPPAEEMPN----------EEP---------------------DGDAEKKEEELTKK 205 (379)
T ss_pred HHHHHHHHHHHheeeCCCccccccCccccCcc----------ccc---------------------ccccccccccccch
Confidence 887776655 4555677654211000000000 000 00000000000001
Q ss_pred hhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCC
Q psy8366 283 SKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGK 360 (513)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~ 360 (513)
....+.+.+++..+...+..... .........+.|.+++ ..|++... +.......++.+++.++.+++.||..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~ 281 (379)
T TIGR00881 206 QIFLQYVLLNKVLWYISLGYVFV----YVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFN 281 (379)
T ss_pred HHHHHHHHhcchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcC
Confidence 11133333433333222222222 2223345567777775 46887766 778888899999999999999998643
Q ss_pred chHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHH
Q psy8366 361 RGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNF 440 (513)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 440 (513)
++...............+.........+.+.........+. ...+..+....+..|.+|++.|+++.|+.+...++|+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 360 (379)
T TIGR00881 282 GRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGF-LVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGI 360 (379)
T ss_pred CcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhh
Confidence 33222222221111111111110001112222222222222 22333444557889999999999999999999999999
Q ss_pred HHHHHhhhhhhccchhHH
Q psy8366 441 ISTKTYINLTSWFGLHGT 458 (513)
Q Consensus 441 ~~~~~~g~l~~~~g~~~~ 458 (513)
++|.+.|.+.|..||+..
T Consensus 361 ~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 361 LAGLPLGYLADGFGWAGA 378 (379)
T ss_pred hhhhhHHHHHHhhccccc
Confidence 999999999999887654
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=250.03 Aligned_cols=340 Identities=13% Similarity=0.126 Sum_probs=244.2
Q ss_pred hcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHH
Q psy8366 47 LGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGW 126 (513)
Q Consensus 47 ~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 126 (513)
.........+.+|.+. +++|.++.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.
T Consensus 17 ~~~~~~~~~~~~p~~~------------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 84 (385)
T TIGR00710 17 GPLGIDMYLPAFPEIA------------ADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSS 84 (385)
T ss_pred HHHHHHHhcccHHHHH------------HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHH
Confidence 3455666778889998 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHh
Q psy8366 127 ILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLI 202 (513)
Q Consensus 127 ~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~ 202 (513)
+++.++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++.++..+ +||+.|++
T Consensus 85 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 164 (385)
T TIGR00710 85 LGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF 164 (385)
T ss_pred HHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888887776554 89999999
Q ss_pred hhHHHHHHHHH-HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhh
Q psy8366 203 SAIFPILTMIM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQ 281 (513)
Q Consensus 203 ~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (513)
.+++.++..+. .++.||+++. ++.++.++ .
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---------------------------------------------~ 195 (385)
T TIGR00710 165 LSLAGILLSALIFFILPETLPY----EARIQIST---------------------------------------------Y 195 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCCCC----cccCCHHH---------------------------------------------H
Confidence 88887776664 4456765421 00000000 0
Q ss_pred hhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccC
Q psy8366 282 LSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLG 359 (513)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g 359 (513)
... ++..++++..+........... .......+.|.+++ ..|.++.. +.......++.+++.++.+++.||++
T Consensus 196 ~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 270 (385)
T TIGR00710 196 FET-FLLLLKSKMFWGYALIYGASFG----GFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWG 270 (385)
T ss_pred HHH-HHHHHcCchhHHHHHHHHHHHH----HHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 011 2222333322222222221111 12233445566665 67887776 77788888999999999999999999
Q ss_pred CchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHH-HHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHH
Q psy8366 360 KRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTI-FCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVV 438 (513)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 438 (513)
+|+.+..+..+..++.+++....... ...+..... ..+.+.+. ....+.......|..| ++++++.++.+.....+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 347 (385)
T TIGR00710 271 AKSLLRMGLILFAVSAVLLEITAILG-LGSWAMIIGPMMFVGIGN-SMISSIAMAYALEDFP-HVAGTASALFGTLRLVL 347 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHH
Confidence 99988887777666665554432111 112222222 22222222 2334555567778777 67999999999998877
Q ss_pred HHHHHHHhhhhhhccch
Q psy8366 439 NFISTKTYINLTSWFGL 455 (513)
Q Consensus 439 ~~~~~~~~g~l~~~~g~ 455 (513)
+.+.+.+.+.+.+..++
T Consensus 348 g~i~~~~~~~~~~~~~~ 364 (385)
T TIGR00710 348 GAIVGYLVSLIHGNTAW 364 (385)
T ss_pred HHHHHHHHHhccccChH
Confidence 77777777755444333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=249.48 Aligned_cols=356 Identities=13% Similarity=0.107 Sum_probs=245.5
Q ss_pred HhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHH-HHhHHH
Q psy8366 44 LFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMI-LVGFPF 122 (513)
Q Consensus 44 ~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~ 122 (513)
.+..++..+...+.+|.... +++|.|+.+.|++.+++.+...+.+++.|+++||+||||.++ .+..+.
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~-----------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~ 74 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLS-----------EEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLA 74 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHH-----------cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 34445556666677776431 789999999999999999999999999999999999998765 456666
Q ss_pred HHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchh--hhHhhHHHHHHHHHHHHHhh----hHhH
Q psy8366 123 FLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSL--SLFAGAACNFGVFIIFLIYA----LTDW 196 (513)
Q Consensus 123 ~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~lG~~~~~~l~~----~~~w 196 (513)
.++.++++++++++.+++.|+++|.+.+...|...++..|+.|+++|++. .+....+.++|..+++.++. ..+|
T Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~ 154 (375)
T TIGR00899 75 ALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGF 154 (375)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhccc
Confidence 77888889999999999999999988888888888889999887777654 56666666777777666654 4489
Q ss_pred HHHHHhhhHHHHHHHHH-HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchh
Q psy8366 197 RTTVLISAIFPILTMIM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTD 275 (513)
Q Consensus 197 r~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (513)
|+.|++.+++.++..+. .+++||+|+....+. + +
T Consensus 155 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~----------------------------------------- 189 (375)
T TIGR00899 155 TVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL---T-R----------------------------------------- 189 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCccccc---C-c-----------------------------------------
Confidence 99999999887776664 455788764210000 0 0
Q ss_pred hcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHH-HhcCCCchh-HHHHHHHHHHHHHhhhHHHH
Q psy8366 276 QRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIF-RTFGLPMKS-EWVLVLTGILSITGSFVSTI 353 (513)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~ 353 (513)
.+ .+...+++..+.......+.... ......+.|.++ ++.|.+... +.......+..+++.++.|+
T Consensus 190 -------~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 257 (375)
T TIGR00899 190 -------LE-VRGLLASRDTRLLFVACTLMWGC----NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGY 257 (375)
T ss_pred -------ch-hhhhhcCcchHHHHHHHHHHHHH----HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 00 11111222222222222221111 122234456555 457877765 66666666777888899999
Q ss_pred hhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHH
Q psy8366 354 TVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAA 433 (513)
Q Consensus 354 l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 433 (513)
+.||+++|+.+..+..+..+....+.... +.+.......+.+.+.+ ...+....+..|..|+ +++++.|+.+.
T Consensus 258 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 330 (375)
T TIGR00899 258 LIKRFGKRRLMLLAALAGVAFYTGLAADN-----SLWALLMLQLLNAIFIG-ILAGIGMLYFQDLMPG-RAGAATTLYTN 330 (375)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcc-hhhHHHHHHHH
Confidence 99999999988777665544443333222 23322222222233222 2345556778888774 56799999999
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhhee
Q psy8366 434 SSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 434 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 474 (513)
..++|..++|.+.|.+.+..|++..+.+.+++.+++.++..
T Consensus 331 ~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 331 TGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999888888777766543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-31 Score=258.82 Aligned_cols=387 Identities=14% Similarity=0.067 Sum_probs=256.9
Q ss_pred HHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHH
Q psy8366 42 FLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFP 121 (513)
Q Consensus 42 ~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 121 (513)
+..+...++....++.+|.+. +++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+..+
T Consensus 17 ~~~~~~~~~~~~~~~~~p~~~------------~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~ 84 (471)
T PRK10504 17 FGFFMQSLDTTIVNTALPSMA------------QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVL 84 (471)
T ss_pred HHHHHHHHhHHHHHHHHHHHH------------HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 344555566667778899999 88999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh----HhHH
Q psy8366 122 FFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL----TDWR 197 (513)
Q Consensus 122 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----~~wr 197 (513)
.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..+++.+++. .+||
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~ 164 (471)
T PRK10504 85 FTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWH 164 (471)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHH
Confidence 999999999999999999999999999999999999999999999999999999998888888887777654 4999
Q ss_pred HHHHhhhHHHHHHHHHH-HhccCchhhhhhcCChHHHHHHHH--------H-hhCCCchhhHHHHHHHHHHhhccccccc
Q psy8366 198 TTVLISAIFPILTMIMI-AFIPESPTWLVSKGRLEEAERSLR--------W-VRGWSKKHKVRVEFEQLVKDTNSATLYV 267 (513)
Q Consensus 198 ~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (513)
+.|++..+...+..+.. ...|+.+. .+.+.+....... . ..+..................... .
T Consensus 165 ~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 238 (471)
T PRK10504 165 WIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVA--L- 238 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHH--H-
Confidence 99999887776666543 34454432 1111111110000 0 000000000000000000000000 0
Q ss_pred cccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHH
Q psy8366 268 ADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSI 345 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~ 345 (513)
.....+++...++..+ .+ +++++.++......++... .......+.|++++ ..|.++.. ++......++.+
T Consensus 239 -~~~~~~~~~~~~~~~~-~~-l~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~ 311 (471)
T PRK10504 239 -LLYLLHARNNNRALFS-LK-LFRTRTFSLGLAGSFAGRI----GSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSM 311 (471)
T ss_pred -HHHHHHHhcCCCCccC-HH-HhcccchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 0000000001011112 22 3344333333222222222 23334456777776 47877766 777777888888
Q ss_pred HhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhh
Q psy8366 346 TGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRG 425 (513)
Q Consensus 346 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 425 (513)
++.++.+++.||+|+|+.+..+..+..+...++.... .....+.......+.+.+.+ ...+.......+..|++.++
T Consensus 312 ~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g 388 (471)
T PRK10504 312 GMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA--LLGWYYLLPFVLFLQGMVNS-TRFSSMNTLTLKDLPDNLAS 388 (471)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc--ccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHhcc
Confidence 8889999999999999999888887777666554432 11111111222222222222 22344557777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccchh
Q psy8366 426 IASGITAASSSVVNFISTKTYINLTSWFGLH 456 (513)
Q Consensus 426 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 456 (513)
.++|+.++...+|..+|+.+.|.+.+..|+.
T Consensus 389 ~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 389 SGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999998877653
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-30 Score=244.91 Aligned_cols=336 Identities=24% Similarity=0.331 Sum_probs=274.9
Q ss_pred HHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHH
Q psy8366 43 LLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPF 122 (513)
Q Consensus 43 ~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 122 (513)
..+...+......+..|.+. +++|.+..+.+++.+.+.++..+++++.|+++||+|||+.+.++.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~ 74 (352)
T cd06174 7 GFFLSGLDRGLLSPALPLLA------------EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLF 74 (352)
T ss_pred HHHHHHHhhhhhHhhHHHHH------------HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHH
Confidence 34455566777778888888 788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----hHHH
Q psy8366 123 FLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----DWRT 198 (513)
Q Consensus 123 ~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~ 198 (513)
.++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++..++......+|..+++.++..+ +||+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 154 (352)
T cd06174 75 ALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRW 154 (352)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998888887655 7999
Q ss_pred HHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcc
Q psy8366 199 TVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRK 278 (513)
Q Consensus 199 ~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (513)
.+++.+++.++..+...+++ |
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~--~--------------------------------------------------------- 175 (352)
T cd06174 155 LFLILAILGLLLALLLLFLL--R--------------------------------------------------------- 175 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHH--H---------------------------------------------------------
Confidence 99999888877766544432 0
Q ss_pred hhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhc-CCCchh-HHHHHHHHHHHHHhhhHHHHhhc
Q psy8366 279 SSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTF-GLPMKS-EWVLVLTGILSITGSFVSTITVN 356 (513)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d 356 (513)
. ........+...........+.+.+.++. +.+... +.......++..++.++.+++.|
T Consensus 176 ------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 236 (352)
T cd06174 176 ------------------L-LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236 (352)
T ss_pred ------------------H-HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11111222222333445567777777654 777666 78888999999999999999999
Q ss_pred ccCCch-HHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHH
Q psy8366 357 KLGKRG-MTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASS 435 (513)
Q Consensus 357 ~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 435 (513)
|++||+ .+..+..+..++.+.+.... +.+.......+.+.+ .....+...++..|..|+++|++..|+.+...
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (352)
T cd06174 237 RLGRRRLLLLIGLLLAALGLLLLALAP-----SLALLLVALLLLGFG-LGFAFPALLTLASELAPPEARGTASGLFNTFG 310 (352)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHH-HhccchhHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 999999 88888888888777666543 333333333333333 34556777889999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhhee
Q psy8366 436 SVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 436 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 474 (513)
+++..++|.+.+.+.+..+++..+.+.+++.+++.++..
T Consensus 311 ~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 311 SLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 999999999999999999999999999888888776544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=248.70 Aligned_cols=363 Identities=14% Similarity=0.060 Sum_probs=243.6
Q ss_pred HHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHH
Q psy8366 37 SVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMI 116 (513)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~ 116 (513)
.+..++.....-++......+.+.+. +.||++++..|++.+.+.+.+.+++|++|+++|||.||+++.
T Consensus 35 l~il~~vnlmny~Dr~~iagv~~~v~------------~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~ 102 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVLKEVQ------------TYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIA 102 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHH------------HhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEe
Confidence 33444555556667777777888888 899999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH--
Q psy8366 117 LVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT-- 194 (513)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-- 194 (513)
+|.+++.++.++++++..||++.++|.+.|+|.+...|+++++++|.+|..+|++++++++.+..+|..+|.+.+..+
T Consensus 103 vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~ 182 (493)
T KOG1330|consen 103 VGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVAS 182 (493)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeecc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998887776654
Q ss_pred ---hHHHHHHhhhHHHHHHHHH-HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhcccccccccc
Q psy8366 195 ---DWRTTVLISAIFPILTMIM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADS 270 (513)
Q Consensus 195 ---~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (513)
.|||.|+..++++++..++ .++.+|++| +..++.+. .
T Consensus 183 ~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~~~-------~--------------------------- 223 (493)
T KOG1330|consen 183 LTFWWRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEVDG-------E--------------------------- 223 (493)
T ss_pred CccceEEEEEeehHHHHHHHHHHHhhccCccc-----cccccccc-------C---------------------------
Confidence 5999999999999988885 556677542 11111110 0
Q ss_pred ccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhh
Q psy8366 271 EYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSF 349 (513)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 349 (513)
.+..+.....+++ .+.+.+.+......+......+.......+.+.+.+...+-.|.+.+. .++..+...++.+|.+
T Consensus 224 -~~~~~~~ts~~kD-l~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl 301 (493)
T KOG1330|consen 224 -NKMVKPFTSVWKD-LKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVL 301 (493)
T ss_pred -CcCCCCccchHHH-HHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhhe
Confidence 0000011111222 333333232222222222222222222233334444444445666555 5677788889999999
Q ss_pred HHHHhhcccCC----chHHHHhhHH----HHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccch
Q psy8366 350 VSTITVNKLGK----RGMTLWSTGI----NTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPL 421 (513)
Q Consensus 350 ~~g~l~d~~g~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 421 (513)
++|.++||+.+ ........+. ...+...+........ ......+.+++++............-+..|++|+
T Consensus 302 ~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~-~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p 380 (493)
T KOG1330|consen 302 FGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTS-SSMIFGLILFLVGETISWFNWATNNPIFLEVVPP 380 (493)
T ss_pred ehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHhcccccccceeeEecCc
Confidence 99999999432 1122221111 1111111211111112 2222222222222222223333444578889999
Q ss_pred hhhhHHHHHHHHHHHHHH-HHHHHHhhhhhhcc
Q psy8366 422 QVRGIASGITAASSSVVN-FISTKTYINLTSWF 453 (513)
Q Consensus 422 ~~~~~~~g~~~~~~~~g~-~~~~~~~g~l~~~~ 453 (513)
+.|.++.++-..+..+.+ +-+|++.|.+.|..
T Consensus 381 ~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 381 SRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred ccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 999999999887776554 45555999888764
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-30 Score=246.93 Aligned_cols=351 Identities=14% Similarity=0.081 Sum_probs=251.3
Q ss_pred HHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHH
Q psy8366 42 FLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFP 121 (513)
Q Consensus 42 ~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 121 (513)
+..+..+.......+.+|.+. +++|.|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++
T Consensus 13 ~~~~~~~~~~~~~~~~lp~~~------------~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~ 80 (381)
T PRK03633 13 CGLLLLTLAIAVLNTLVPLWL------------AQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLI 80 (381)
T ss_pred HHHHHHHHhhhhHHHHHHHHH------------HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334445677788889999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhHh---HHH
Q psy8366 122 FFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTD---WRT 198 (513)
Q Consensus 122 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~---wr~ 198 (513)
.+++.+++++++|++.++++|+++|++.+...+...+.+.+..++++|+++++.+..+.++|..+|+.++..+. ++.
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 160 (381)
T PRK03633 81 FAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSV 160 (381)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 99999999999999999999999999999888888888889999999999999999999999999998877651 122
Q ss_pred HHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcc
Q psy8366 199 TVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRK 278 (513)
Q Consensus 199 ~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (513)
..+..+......... ++.+.+|+ +.+++ +
T Consensus 161 ~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~-------------------------------------------~--- 189 (381)
T PRK03633 161 LPWVTGLVLAAILPL-LFTRILNQ----QAENH-------------------------------------------D--- 189 (381)
T ss_pred HHHHHHHHHHHHHHH-HHhcccCC----CCCCC-------------------------------------------C---
Confidence 222222222211111 22121111 00000 0
Q ss_pred hhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcc
Q psy8366 279 SSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNK 357 (513)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~ 357 (513)
..+ .....+++..+........... .......+.|.++++.|.+... +.......++.+++++..|++.||
T Consensus 190 ---~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr 261 (381)
T PRK03633 190 ---STS-IWPMLKLRQARLGVNGCIISGI----VLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADR 261 (381)
T ss_pred ---CCC-HHHHHHhcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 000 1111122222211111111111 1223345678888878887766 777788889999999999999999
Q ss_pred cCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHH
Q psy8366 358 LGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSV 437 (513)
Q Consensus 358 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 437 (513)
+++|+.+..+..+..++.+.+. . .. .......+.+.. .....|...+.+.|..|+++++.+.+..+...++
T Consensus 262 ~~~~~~l~~~~~~~~~~~~~~~--~-----~~-~~~~~~~l~g~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (381)
T PRK03633 262 FGRLLVLRVQVFVVILGSIAML--S-----QA-AMAPALFILGAA-GFTLYPVAMAWACEKVEHHELVAMNQALLLSYTV 332 (381)
T ss_pred cCcHHHHHHHHHHHHHHHHHHh--h-----hH-HHHHHHHHHHHH-HHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 9999988877777666554332 1 11 111122222222 2344577777888988888888888888888999
Q ss_pred HHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhh
Q psy8366 438 VNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIY 472 (513)
Q Consensus 438 g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 472 (513)
|+.++|.+.|.+.|..|+...|.+.+++.++..+.
T Consensus 333 G~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 333 GSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888887777766543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-31 Score=260.75 Aligned_cols=388 Identities=13% Similarity=0.077 Sum_probs=261.9
Q ss_pred HHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHH
Q psy8366 39 AQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILV 118 (513)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~ 118 (513)
..++..+...++....++.+|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~------------~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 73 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIA------------GDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLIS 73 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHH
Confidence 334455666677788889999999 89999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----
Q psy8366 119 GFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT---- 194 (513)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---- 194 (513)
.++.+++.+++++++|++.++++|+++|++.+...+...+++.|++|+++|+++.+++..+..+|..+++.++..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 153 (485)
T TIGR00711 74 TFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY 153 (485)
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999888888776654
Q ss_pred hHHHHHHhhhHHHHHHHHH-HHhccCchhhhhhcCChHHHHHHH--------H-Hh-hCCCchhhHH-HHHHHHHHhhcc
Q psy8366 195 DWRTTVLISAIFPILTMIM-IAFIPESPTWLVSKGRLEEAERSL--------R-WV-RGWSKKHKVR-VEFEQLVKDTNS 262 (513)
Q Consensus 195 ~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~--------~-~~-~~~~~~~~~~-~~~~~~~~~~~~ 262 (513)
+||+.|++.+++.++..++ .++.||+++. .+++.+.....+ . .. .+...+.... ............
T Consensus 154 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (485)
T TIGR00711 154 HWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVA 231 (485)
T ss_pred CceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHH
Confidence 9999999998887776664 4456665331 111111110000 0 00 0000000000 000000000000
Q ss_pred ccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh-cCCCchh-HHHHHHH
Q psy8366 263 ATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT-FGLPMKS-EWVLVLT 340 (513)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~ 340 (513)
... ....+.+++++..+ .+.++++. .+...+...+... .......+.|.++++ .|+++.. +....+.
T Consensus 232 ~~~-----~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~ 300 (485)
T TIGR00711 232 IIA-----FVVWELTDDNPLVD-LRLFKYRN-FTIGCVYMSLLGL----GLYGSFYLLPLYLQQVLGYTALQAGLHILPV 300 (485)
T ss_pred HHH-----HHHHHHcCCCCccC-HHHHcCCC-hHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 000 00000000011111 22333332 2222222222222 233344677877764 7888776 7888888
Q ss_pred HHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccc
Q psy8366 341 GILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFP 420 (513)
Q Consensus 341 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 420 (513)
.++.++++++.|++.||++||+.+..+..+.+++..++.... ..+.+.+.......+.+.+.+.. .+.......+..|
T Consensus 301 ~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~g~g~~~~-~~~~~~~~~~~~~ 378 (485)
T TIGR00711 301 GLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTF-TPDTPFLAIALPQFIRGFGMGCF-FMPLTTIALSGLP 378 (485)
T ss_pred HHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCC
Confidence 999999999999999999999998888877777666554211 11112222222333333333222 2333355667789
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy8366 421 LQVRGIASGITAASSSVVNFISTKTYINLTSWF 453 (513)
Q Consensus 421 ~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 453 (513)
+++++++.|+.++.+.+|+.+|+.+.+.+.++.
T Consensus 379 ~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 379 PHKIARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-31 Score=251.77 Aligned_cols=361 Identities=16% Similarity=0.196 Sum_probs=263.6
Q ss_pred CCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhch--hHHHHHHHHHHhhccccc
Q psy8366 74 SPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAE--TVSIIMLGTVCMGLSVGC 151 (513)
Q Consensus 74 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~g~~~ 151 (513)
+.+++++..+.+++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++...+. +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 368999999999999999999999999999999999999999999999999999998876 556789999999999999
Q ss_pred cccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH-----hHHHHHHhhhHHHHHHHHHH-HhccCchhhhh
Q psy8366 152 CEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT-----DWRTTVLISAIFPILTMIMI-AFIPESPTWLV 225 (513)
Q Consensus 152 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-----~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~ 225 (513)
.+|+...+.++|.|++||++..++..++..+|.+++..+++.+ ||++.|++.++++++..+++ ++..|+|+.
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~-- 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK-- 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc--
Confidence 9999999999999999999999999999999988876665554 99999999999999888865 456777752
Q ss_pred hcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHH
Q psy8366 226 SKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILF 305 (513)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (513)
.+.-.++.++.++ +.+ ..++.++ ++..+ ++.+.+.+ .++...+.
T Consensus 223 h~~is~~El~~I~-------------------~~k----------~~~~~~~--~~~vP-~~~i~ts~----~vwai~~~ 266 (466)
T KOG2532|consen 223 HPNISEKELKYIE-------------------KGK----------SEAHVKK--KPPVP-YKAILTSP----PVWAIWIS 266 (466)
T ss_pred CCCCCHHHHHHHH-------------------hcc----------cccccCC--CCCCC-HHHHHcCH----HHHHHHHH
Confidence 1111111111111 111 0000000 01233 33344432 24444445
Q ss_pred HHHHhhchhchhhhHHHHHHh-cCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCc--------h-HHHHhhHHHHHH
Q psy8366 306 FITIIASLQPMRPFLVEIFRT-FGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKR--------G-MTLWSTGINTFF 374 (513)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~--------~-~~~~~~~~~~~~ 374 (513)
.+....++..+..|.|.|+++ +|++... |+..++..+...+..+++|.++||+.+| | .-.++....+++
T Consensus 267 ~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~ 346 (466)
T KOG2532|consen 267 AFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVF 346 (466)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHH
Confidence 555555678888999999975 8998887 8999999999999999999999988652 2 223444555555
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh---
Q psy8366 375 TLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTS--- 451 (513)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~--- 451 (513)
++.+.+.. ..+.+..++++.+..... ....+..+.-..+..| ++.+..+|+.+.+..+.++++|.+.|.+..
T Consensus 347 l~~l~~~~---~~~~~~a~~~l~~~~~~~-g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t 421 (466)
T KOG2532|consen 347 LLVLAFTS---DEHRLLAVILLTIAIGLS-GFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVTDNT 421 (466)
T ss_pred HHeeeecC---CCcchHHHHHHHHHHHHc-ccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCC
Confidence 55554443 223333333333332322 2222333333444344 899999999999999999999999999983
Q ss_pred ccchhHHHHHHHHHHHHHHhheeEEc
Q psy8366 452 WFGLHGTLFIYTLVSFLGFIYIYFYV 477 (513)
Q Consensus 452 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 477 (513)
...|+..|++.+++.+++.++..++-
T Consensus 422 ~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 422 REEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHHHHHHHHHHHhchheeEee
Confidence 34699999999999998887655443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.8e-30 Score=246.32 Aligned_cols=345 Identities=17% Similarity=0.111 Sum_probs=232.8
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHH---h-chhHHHHHHHHHHhhcccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLY---L-AETVSIIMLGTVCMGLSVG 150 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~l~G~g~~ 150 (513)
+|+|.++++.|++.+.+.++..++++++|++.||+||||++..+.++.+++.+++. + .++++.+++.|+++|++.+
T Consensus 41 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~ 120 (402)
T TIGR00897 41 KALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYP 120 (402)
T ss_pred HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchH
Confidence 67899999999999999999999999999999999999999999999998877653 3 3578889999999999998
Q ss_pred ccccchhhhhhccCCccccchhhhHhhHHHHHHH-HHHHHHhhh----HhHHHHHHhhhHHHHHHHHH-HHhccCchhhh
Q psy8366 151 CCEAPIISYIGEISEPRMRGSLSLFAGAACNFGV-FIIFLIYAL----TDWRTTVLISAIFPILTMIM-IAFIPESPTWL 224 (513)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~-~~~~~l~~~----~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~ 224 (513)
...+...+++.+++|+++|++++++..++.++|. ++++.++.. +||+..++......++..++ .++.++.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 199 (402)
T TIGR00897 121 LFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTP- 199 (402)
T ss_pred HHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCCc-
Confidence 8888888889999999999999999999999886 567776543 37665555443333333332 3334443210
Q ss_pred hhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHH
Q psy8366 225 VSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMIL 304 (513)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (513)
.+++++++. .+. ... .+.+++++..+.....
T Consensus 200 ~~~~~~~~~--------------------~~~-------------------------~~~-~~~~~~~~~~~~~~~~--- 230 (402)
T TIGR00897 200 QHMQTREKF--------------------SEL-------------------------GKA-ATILFTNPNVLLGGMV--- 230 (402)
T ss_pred ccccCCcch--------------------hhH-------------------------HHH-HHHHHcChhHHHHHHH---
Confidence 000000000 000 000 2233333322222222
Q ss_pred HHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHH-HhhHHHHHHHHHHHHHH
Q psy8366 305 FFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTL-WSTGINTFFTLMLSICA 382 (513)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~ 382 (513)
.+...........|.|.+.++.|++... +.......++..+++++.|+++||++||+... .+.....++...+....
T Consensus 231 -~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~ 309 (402)
T TIGR00897 231 -RIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIP 309 (402)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 1122223445567888888888888776 67777788999999999999999999888664 23333333323322221
Q ss_pred HhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHH
Q psy8366 383 MNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIY 462 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 462 (513)
.....+.+...+...+.+.+.+ +..+. .....|..| ++|+++.|+.+...++++.++|.+.|.+.+..|+...+++.
T Consensus 310 ~~~~~~~~~~~~~~~~~G~~~~-~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~ 386 (402)
T TIGR00897 310 QHFGHSFAVALIIAIALGIFLA-GYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIF 386 (402)
T ss_pred HccCCcHHHHHHHHHHHHHHHH-HHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 1111122222233333333322 22333 345567644 68999999999999999999999999999999999999988
Q ss_pred HHHHHHHHhhe
Q psy8366 463 TLVSFLGFIYI 473 (513)
Q Consensus 463 ~~~~~~~~~~~ 473 (513)
+++.+++.++.
T Consensus 387 a~~~~i~~~~~ 397 (402)
T TIGR00897 387 AALYVVSAFLT 397 (402)
T ss_pred HHHHHHHHHHH
Confidence 88877766544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-30 Score=249.66 Aligned_cols=359 Identities=14% Similarity=0.133 Sum_probs=247.6
Q ss_pred HHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHH
Q psy8366 38 VAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMIL 117 (513)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~ 117 (513)
.......+..++......+.+|.+. +++|+|+.+.|++.+.+.+++.+++++.|++.||+|||+++..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~p~i~------------~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~ 96 (438)
T PRK10133 29 ALLCSLFFLWAVANNLNDILLPQFQ------------QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIIT 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 3334555666777788889999998 8999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHH---HhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh-
Q psy8366 118 VGFPFFLGWILL---YLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL- 193 (513)
Q Consensus 118 ~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~- 193 (513)
+.++++++++++ .++++++.++++|+++|+|.|...+....++.|+.|+++|.+.+++.+..+.+|..+++.++..
T Consensus 97 g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 97 GLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999886 5688999999999999999999999999999998877777777888888888888887766421
Q ss_pred -----------------------------HhHHHHHHhhhHHH-HHHHHH-HHhccCchhhhhhcCChHHHHHHHHHhhC
Q psy8366 194 -----------------------------TDWRTTVLISAIFP-ILTMIM-IAFIPESPTWLVSKGRLEEAERSLRWVRG 242 (513)
Q Consensus 194 -----------------------------~~wr~~f~~~~~~~-~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~ 242 (513)
.+||++|+....+. ++..+. ....||.+. +++.++..
T Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~~~~~~-------- 244 (438)
T PRK10133 177 ILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNHSDAKQ-------- 244 (438)
T ss_pred HhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----cccccccc--------
Confidence 25666776444333 332222 222444221 00000000
Q ss_pred CCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHH
Q psy8366 243 WSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVE 322 (513)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (513)
. ....+ .+.+++++..+...+..++.... ......|.+.
T Consensus 245 ---------------------------------~---~~~~~-~~~ll~~~~~~~~~l~~~~~~~~----~~~~~~~~~~ 283 (438)
T PRK10133 245 ---------------------------------G---SFSAS-LSRLARIRHWRWAVLAQFCYVGA----QTACWSYLIR 283 (438)
T ss_pred ---------------------------------c---chhhh-HHHHHhCchHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 0 00011 22233333323222222222222 2223345555
Q ss_pred HH-H-hcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHH
Q psy8366 323 IF-R-TFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTC 399 (513)
Q Consensus 323 ~~-~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (513)
++ + ..|+++.. +.......++.++++++.+++.||+++|+.+..+..+..+.+++..... .. .....+.+.
T Consensus 284 ~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~l~ 357 (438)
T PRK10133 284 YAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG-----GH-VGLIALTLC 357 (438)
T ss_pred HHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC-----Ch-HHHHHHHHH
Confidence 53 4 47888876 7888999999999999999999999999988877666655544433321 11 222333333
Q ss_pred HHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHHHHH
Q psy8366 400 FWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFG-LHGTLFIYTLVSFLGF 470 (513)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~ 470 (513)
+.+. ....|..++...+..| ++.+.+.++.. ...+|+.++|.+.|.+.|..| .+..+++.....+...
T Consensus 358 glg~-~~i~P~~~s~a~~~~~-~~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 358 SAFM-SIQYPTIFSLGIKNLG-QDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_pred HHHH-HHHHHHHHHHHHcccc-hhhccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 3333 4556888888888877 45788888886 455788999999999999887 6777765544444333
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-30 Score=232.74 Aligned_cols=356 Identities=16% Similarity=0.212 Sum_probs=273.3
Q ss_pred cccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHH
Q psy8366 50 AFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILL 129 (513)
Q Consensus 50 ~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 129 (513)
.....+++.+.+. +|+|+|++|.+++.++..+...+..++.|.+.||+|.|++..++.++..+-++..
T Consensus 29 VW~l~s~l~~~i~------------~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~ 96 (417)
T COG2223 29 VWTLFSPLGVFIK------------SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGL 96 (417)
T ss_pred HHHHHHHHHhhhc------------cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHH
Confidence 3455677888888 8999999999999999999999999999999999999999999999999999999
Q ss_pred HhchhHH---HHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHH----HHHHhhhHh---HHHH
Q psy8366 130 YLAETVS---IIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFI----IFLIYALTD---WRTT 199 (513)
Q Consensus 130 ~~~~~~~---~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~----~~~l~~~~~---wr~~ 199 (513)
+++.+.+ ++++.+++.|++ |+.+.+...++++|+|++++|.++|+.. ..++|..+ +|.+....+ ||..
T Consensus 97 ~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~ 174 (417)
T COG2223 97 AFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNV 174 (417)
T ss_pred HHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9986555 999999999998 4589999999999999999999999998 66666544 566666667 9999
Q ss_pred HHhhhHHHHHHHHH-HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcc
Q psy8366 200 VLISAIFPILTMIM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRK 278 (513)
Q Consensus 200 f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (513)
..+..+..++..+. ++...|.|+....+++...
T Consensus 175 ~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~---------------------------------------------- 208 (417)
T COG2223 175 AGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP---------------------------------------------- 208 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChhhhccccccch----------------------------------------------
Confidence 99998888887774 5556666642110100000
Q ss_pred hhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhhhHHHHhhc
Q psy8366 279 SSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGSFVSTITVN 356 (513)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d 356 (513)
.+ .+..++++..|. ..+.++..+.++..+..++|.+++ ++|.++.. +.......+.+.+.++++|+++|
T Consensus 209 ----~~-~~~v~~~~~~W~----lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsD 279 (417)
T COG2223 209 ----AQ-LKAVFSNKDTWL----LSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSD 279 (417)
T ss_pred ----hH-HHHHhcCcchHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhh
Confidence 00 333343333333 233334444456677888898886 68988876 78888888999999999999999
Q ss_pred ccCCchHHHHhhHHHHHHHHHHHHHHHhcC--CCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHH
Q psy8366 357 KLGKRGMTLWSTGINTFFTLMLSICAMNLQ--WPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAAS 434 (513)
Q Consensus 357 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 434 (513)
|+|.+|.+...+..+.++..++........ .+.+.....+.......+.+ ....+-++...+| ++.|.+.|+....
T Consensus 280 R~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~G-nGsvfk~Ip~if~-~~~G~v~G~vga~ 357 (417)
T COG2223 280 RIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLG-NGSVFKMIPVIFP-KETGAVTGIVGAI 357 (417)
T ss_pred hccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccC-cchheeechHHHH-hhhhHHHHHHHHh
Confidence 999999999888888888777776542211 22333333344444444333 3444578888877 6889999999999
Q ss_pred HHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHHHHHhheeEE
Q psy8366 435 SSVVNFISTKTYINLTSWFG-LHGTLFIYTLVSFLGFIYIYFY 476 (513)
Q Consensus 435 ~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 476 (513)
+.+|++.-|...|...+.+| +...|+++..+.+++.++.+..
T Consensus 358 G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 358 GGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred ccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 7788888888888887765543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.3e-30 Score=245.48 Aligned_cols=343 Identities=12% Similarity=0.103 Sum_probs=232.4
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhcccccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEA 154 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~ 154 (513)
.+++.++.+.+++.+.+.+++.++++++|+++||+|||++++++.++.+++++++.++.+. ++.|+++|++.+...|
T Consensus 31 ~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~p 107 (393)
T PRK11195 31 KELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSP 107 (393)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 6888899999999999999999999999999999999999999999999999888887664 7899999999999999
Q ss_pred chhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH---hHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChH
Q psy8366 155 PIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT---DWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLE 231 (513)
Q Consensus 155 ~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~ 231 (513)
+..+++.|++|+++|++++++.+....+|.++||.+++.+ .|+..+.+.+...++..+..+.+||+|+.. +.+.+
T Consensus 108 a~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~--~~~~~ 185 (393)
T PRK11195 108 AKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLGARR--PGQSW 185 (393)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc--cccCC
Confidence 9999999999999999999999999998888888887765 466666665555444444556678765321 00000
Q ss_pred HHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhh
Q psy8366 232 EAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIA 311 (513)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (513)
+..+..+ +. ... .+.+++++..+..+....+.....
T Consensus 186 ~~~~~~~----------------~~-------------------------~~~-~~~l~~~~~~~~~~~~~~~~~~~~-- 221 (393)
T PRK11195 186 NPIALLR----------------DF-------------------------FHA-CRVLWRDKLGRFSLAGTTLFWGAG-- 221 (393)
T ss_pred CHHHHHH----------------HH-------------------------HHH-HHHHHhCchhHHHHHHHHHHHHHH--
Confidence 0000000 00 000 222333333333222222221111
Q ss_pred chhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCc
Q psy8366 312 SLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPG 389 (513)
Q Consensus 312 ~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
.......+.+++ ..|.++.. +......+++.++++++.+++.||.++++.+..+.. .++....+.... +.
T Consensus 222 --~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~-----~~ 293 (393)
T PRK11195 222 --ATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQH-----SL 293 (393)
T ss_pred --HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHh-----HH
Confidence 122233344443 46777766 788889999999999999999999998887766643 333322222221 23
Q ss_pred hhhHHHHHHHHHHHhccccchhhhhhccccchhh-hhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHH
Q psy8366 390 WIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQV-RGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFL 468 (513)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 468 (513)
+.......+.+.+.+.. .+...+...+..|++. +|++.++.+...+++..++..+.+.+ +..|.+..+.+.+...++
T Consensus 294 ~~~~~~~~~~G~~~g~~-~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 371 (393)
T PRK11195 294 LPAYPLLILIGALGGFF-VVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLV 371 (393)
T ss_pred HHHHHHHHHHHHhhhhh-hhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHH
Confidence 32333333333333222 3334566777756554 79999999999999999999998855 677877766665555555
Q ss_pred HHhheeEE
Q psy8366 469 GFIYIYFY 476 (513)
Q Consensus 469 ~~~~~~~~ 476 (513)
+..+.+.+
T Consensus 372 ~~~~~~~~ 379 (393)
T PRK11195 372 ALAMALLW 379 (393)
T ss_pred HHHHHHHH
Confidence 55444433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-29 Score=244.98 Aligned_cols=338 Identities=14% Similarity=0.099 Sum_probs=238.4
Q ss_pred ccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHH
Q psy8366 49 MAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWIL 128 (513)
Q Consensus 49 ~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 128 (513)
+......|.+|.+. +++|.++++.+++.+++.+++.++++++|+++||+|||+++..+..+.+++.++
T Consensus 20 ~~~~~~~p~~~~i~------------~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 87 (401)
T PRK11043 20 LATDMYLPAFKAIQ------------ADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLG 87 (401)
T ss_pred HHHHHHHhhHHHHH------------HHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHH
Confidence 34555667788888 899999999999999999999999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh----HhHHHHHHhhh
Q psy8366 129 LYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL----TDWRTTVLISA 204 (513)
Q Consensus 129 ~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----~~wr~~f~~~~ 204 (513)
+.++++++.+++.|+++|++.+...+...+++.|++|++++++..+.......+|..+++.++.. .+||+.|++.+
T Consensus 88 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~ 167 (401)
T PRK11043 88 MLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLF 167 (401)
T ss_pred HHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 99999999999999999999888888888899999999999988888877777766666666544 49999999998
Q ss_pred HHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhh
Q psy8366 205 IFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSK 284 (513)
Q Consensus 205 ~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (513)
++.++..+..++++|+++. ++.++. ..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~----~~~~~~------------------------------------------------~~~ 195 (401)
T PRK11043 168 AITLLLILPTLRLKPSKKA----RKQSQD------------------------------------------------ALT 195 (401)
T ss_pred HHHHHHHHHHHHcCCCCCc----cccchH------------------------------------------------HHH
Confidence 8887777665566654320 000000 001
Q ss_pred hhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchH
Q psy8366 285 LLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGM 363 (513)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 363 (513)
++...+++..+.......... ........+.|.++++.|++... +.......++.+++.++.+++.||+++|+.
T Consensus 196 -~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~ 270 (401)
T PRK11043 196 -FKQLLKSKTYLGNVLIFAACS----AAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQL 270 (401)
T ss_pred -HHHHHcChhHHHHHHHHHHHH----HHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 222222222221111111111 11223445677777778888766 676677778889999999999999999887
Q ss_pred HHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHH
Q psy8366 364 TLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFIST 443 (513)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 443 (513)
.........++.+.+...........+.......+.+.+. ....+.......+..| +++|++.|+.++....++..++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~ 348 (401)
T PRK11043 271 LPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAAN-GAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLAS 348 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHH
Confidence 7665555555444333322111112222222222333322 3345555566666666 6899999999999999999999
Q ss_pred HHhhhhhhccchhH
Q psy8366 444 KTYINLTSWFGLHG 457 (513)
Q Consensus 444 ~~~g~l~~~~g~~~ 457 (513)
.+.|.+.+......
T Consensus 349 ~~~g~l~~~~~~~~ 362 (401)
T PRK11043 349 LLVSALISTPLLTT 362 (401)
T ss_pred HHHHHccCCChhHH
Confidence 99999987544433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-29 Score=242.57 Aligned_cols=359 Identities=12% Similarity=0.036 Sum_probs=239.1
Q ss_pred HHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHH
Q psy8366 42 FLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFP 121 (513)
Q Consensus 42 ~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 121 (513)
+..+...+......+.+|.+. +++|.+.++.++..+++.++++++++++|+++||+|||++++.+.++
T Consensus 23 ~~~~~~~~~~~~~~p~l~~i~------------~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 90 (413)
T PRK15403 23 LYDFAAYLTTDLIQPGIINVV------------RDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALI 90 (413)
T ss_pred HHHHHHHHHHHhhccCHHHHH------------HHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHH
Confidence 334444566777888999998 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----hHH
Q psy8366 122 FFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----DWR 197 (513)
Q Consensus 122 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr 197 (513)
++++++++++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..+++.++..+ +||
T Consensus 91 ~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~ 170 (413)
T PRK15403 91 FTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWK 170 (413)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999999999999999999999877777788899999999999999999988888888887776543 999
Q ss_pred HHHHhhhHHHHHHHHH-HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhh
Q psy8366 198 TTVLISAIFPILTMIM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQ 276 (513)
Q Consensus 198 ~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (513)
+.|++.+++.++..+. .+++||+++. +++..+.+.
T Consensus 171 ~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~~~~~----------------------------------------- 206 (413)
T PRK15403 171 VLFAIIAVMGLIAFVGLLLAMPETVKR---GAVPFSAKS----------------------------------------- 206 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccc---cCCCCChHH-----------------------------------------
Confidence 9999999888877664 4557886431 000000000
Q ss_pred cchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh-cCCCchh-HHHHHHHHHHHHHhhhHHHHh
Q psy8366 277 RKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT-FGLPMKS-EWVLVLTGILSITGSFVSTIT 354 (513)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l 354 (513)
..++ ++..++++..+...+...+ ..........+.|.++++ .|++... ++.......+.++++.+.+.+
T Consensus 207 ----~~~~-~~~ll~~~~~~~~~l~~~~----~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~ 277 (413)
T PRK15403 207 ----VLRD-FRNVFRNRLFLTGAATLSL----SYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARF 277 (413)
T ss_pred ----HHHH-HHHHHcCHHHHHHHHHHHH----HHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 2333333322222222222 222223344556777764 5888776 677777777888888888887
Q ss_pred hcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchh-hHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHH
Q psy8366 355 VNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWI-PLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAA 433 (513)
Q Consensus 355 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 433 (513)
.++..+++.......+..++..++........ +.+. ......+.+.+.+ ...+......-.. ....+|++.|+.+.
T Consensus 278 ~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~-~~~~~~~~~~~l~~~G~~-~~~p~~~~~al~~-~~~~~G~a~a~~~~ 354 (413)
T PRK15403 278 VKDPTEPRFIWRAVPIQLVGLALLIVGNLLWP-HVWLWSVLGTSLYAFGIG-LIFPTLFRFTLFS-NNLPKGTVSASLNM 354 (413)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHcc-ccHHHHHHHHHHHHHHHH-HHhHHHHHHHhcc-CCCCCcHHHHHHHH
Confidence 65554444433332333333322222110011 2222 2222222333222 2233333222111 12347999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHH
Q psy8366 434 SSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLG 469 (513)
Q Consensus 434 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 469 (513)
....+..+++...+++.+. +...++...++++.+.
T Consensus 355 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 355 VILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVI 389 (413)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHH
Confidence 9999999999999888776 5455665555554443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=247.79 Aligned_cols=336 Identities=16% Similarity=0.211 Sum_probs=230.6
Q ss_pred ccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHH
Q psy8366 51 FGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLY 130 (513)
Q Consensus 51 ~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 130 (513)
.....+.+|.+. +++|.++.+.++..+.+.++..+++++.|+++||+|||+.++.+.++.+++.+++.
T Consensus 19 ~~~~~~~lp~~~------------~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~ 86 (392)
T PRK10473 19 IDMYLVGLPRIA------------ADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS 86 (392)
T ss_pred HHHHhhhHHHHH------------HHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 334447799998 89999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHH
Q psy8366 131 LAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLISAIF 206 (513)
Q Consensus 131 ~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~ 206 (513)
++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+....+|..+++.++..+ +||+.|++.+++
T Consensus 87 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~ 166 (392)
T PRK10473 87 LAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAM 166 (392)
T ss_pred HhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHH
Confidence 9999999999999999999998999999999999999999999999988888888887776543 899999999888
Q ss_pred HHHHHHH-HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhh
Q psy8366 207 PILTMIM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKL 285 (513)
Q Consensus 207 ~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (513)
.++..++ .+++||+++. +.+ ++.. . .+..
T Consensus 167 ~~i~~~~~~~~~~~~~~~---~~~-~~~~--------------~--------------------------------~~~~ 196 (392)
T PRK10473 167 GILVLLLSLFILKETRPA---RAP-AASS--------------K--------------------------------PREN 196 (392)
T ss_pred HHHHHHHHHHHcCCCCCc---ccC-Cccc--------------h--------------------------------HHHH
Confidence 7776664 4556776421 000 0000 0 0000
Q ss_pred hhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHH-HhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchH
Q psy8366 286 LNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIF-RTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGM 363 (513)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 363 (513)
.+.+++++.... .....+.... ......+.|.++ ++.|++... +......+++.+++.++.+++.||+++|+.
T Consensus 197 ~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~ 271 (392)
T PRK10473 197 SESLLNRFFLSR-LVITTLSVTV----ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTL 271 (392)
T ss_pred HHHHhCHHHHHH-HHHHHHHHHH----HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 111112221111 1111111111 112223445444 457887766 777788899999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHH
Q psy8366 364 TLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFIST 443 (513)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 443 (513)
+..+..+..++.+.+.... ..+...........+.+.+. +. ....+..|.++|+ |..+....++..+++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~g~~~~~-~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~ 340 (392)
T PRK10473 272 MLTSQVLFLAAGITLALSP-----SHAVSLFGITLICAGFSVGF-GV--AMSQALGPFSLRA---GVASSTLGIAQVCGS 340 (392)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHh-HH--HHHHHhccCcccc---cHHHHHHHHHHHHHH
Confidence 8888877777666655543 22222222222222222222 21 2334444544443 444445566777777
Q ss_pred HHhhhhhhccchhHHHHHHHH
Q psy8366 444 KTYINLTSWFGLHGTLFIYTL 464 (513)
Q Consensus 444 ~~~g~l~~~~g~~~~~~~~~~ 464 (513)
.+.+.+.+..|+.....+.+.
T Consensus 341 ~~~~~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 341 SLWIWLAAVLGISAWNMLIGI 361 (392)
T ss_pred HHHHHHHHHhccchhHHHHHH
Confidence 777777777776544444333
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=247.98 Aligned_cols=346 Identities=13% Similarity=0.111 Sum_probs=233.3
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhcccccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEA 154 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~ 154 (513)
+|.+....+.+.+.++++++++++++++|.+.||++..+.+....+++++..++....+|++.+++.|++.|+..++.+|
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP 153 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWP 153 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccch
Confidence 88999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred chhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----------hHHHHHHhhhHHHHHHHH-HHHhccCchh-
Q psy8366 155 PIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----------DWRTTVLISAIFPILTMI-MIAFIPESPT- 222 (513)
Q Consensus 155 ~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----------~wr~~f~~~~~~~~~~~~-~~~~~~e~p~- 222 (513)
....+++.|+.+++|++.++++.+..++|.++|++++..+ ||||.|++.++++++..+ ..+++|+.|.
T Consensus 154 ~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~ 233 (495)
T KOG2533|consen 154 GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSK 233 (495)
T ss_pred HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhh
Confidence 9999999999999999999999999999999999997762 999999999999988887 5667899886
Q ss_pred -hhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHH
Q psy8366 223 -WLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMI 301 (513)
Q Consensus 223 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (513)
+...+++++-. .++.+..+. ...+++ .++..+.+.++.+. ++.
T Consensus 234 ~~fl~~~ek~~~---~~~~~~~~~-------------------------~~~~~~---~~~~~~~~a~~dp~-----vw~ 277 (495)
T KOG2533|consen 234 AWFLTDEEKELV---VERLRESPS-------------------------GGIENK---FKWKGFKEALKDPG-----VWP 277 (495)
T ss_pred ccccchHHHHHH---HHHHHhccC-------------------------CCcccc---cCHHHHHHHHhchh-----HHH
Confidence 11111111111 111110000 000000 22334233333332 233
Q ss_pred HHHHHHHHhhchhchhhhHHHHHHh-cCCCchh-HHHHHHHHHHHHHhhhHHHHhhccc----CCchHHHHhhHHHHHHH
Q psy8366 302 MILFFITIIASLQPMRPFLVEIFRT-FGLPMKS-EWVLVLTGILSITGSFVSTITVNKL----GKRGMTLWSTGINTFFT 375 (513)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~----g~~~~~~~~~~~~~~~~ 375 (513)
..+..++.....+.+.+|+|.++++ .|++..+ ..+..+..++++++.+++|+++||+ .+|........+..+..
T Consensus 278 ~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g 357 (495)
T KOG2533|consen 278 FSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIG 357 (495)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3333344444466788999999987 5577666 6888899999999999999999994 44444443333333322
Q ss_pred -HHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccch-hhhhHHHHHHHHHHHHHHHHHHHHhhh-hhhc
Q psy8366 376 -LMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPL-QVRGIASGITAASSSVVNFISTKTYIN-LTSW 452 (513)
Q Consensus 376 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~~~~~~~~g~-l~~~ 452 (513)
..+.... ......... +.+........+......++.... .++-+..+......+.+++++|.+.-. ....
T Consensus 358 ~~~l~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~ 431 (495)
T KOG2533|consen 358 AISLLAAA-----VLPGAYGAF-LIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPR 431 (495)
T ss_pred HHHHHhhc-----cchHHhHHH-HhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcc
Confidence 2222211 122111111 111111122234444555555443 344455555555566666666655443 3334
Q ss_pred cchhHHHHHH
Q psy8366 453 FGLHGTLFIY 462 (513)
Q Consensus 453 ~g~~~~~~~~ 462 (513)
+++...+...
T Consensus 432 y~~~~~f~~~ 441 (495)
T KOG2533|consen 432 YGWGAVFYML 441 (495)
T ss_pred hhhhhHHHHH
Confidence 5666666333
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-30 Score=248.92 Aligned_cols=333 Identities=19% Similarity=0.268 Sum_probs=226.8
Q ss_pred cchhhHHHHHHH-----HhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHH--------HHHHHHHHh
Q psy8366 79 LSDEQSSWLGSI-----LFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVS--------IIMLGTVCM 145 (513)
Q Consensus 79 ~s~~~~~~~~s~-----~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~ 145 (513)
.++.+.+.+.+. .+++..+++++.|+++||+|||+++..+.++.+++.++++++++++ .++++|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 106 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ 106 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence 455556554443 3444557899999999999999999999999999999999999875 488899999
Q ss_pred hccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhh------------hHhHHHHHHhhhHHHHHHHHH
Q psy8366 146 GLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYA------------LTDWRTTVLISAIFPILTMIM 213 (513)
Q Consensus 146 G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~------------~~~wr~~f~~~~~~~~~~~~~ 213 (513)
|++.+...+...+++.|++|+++|++..++...+..+|.++++.++. ..+||+.|++.+++.++..+.
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL 186 (394)
T ss_pred HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988887643 238999999888777666555
Q ss_pred HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCC
Q psy8366 214 IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPE 293 (513)
Q Consensus 214 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (513)
....||+|++..++++.+ ++ ..+ .+...+++
T Consensus 187 ~~~~~~~~~~~~~~~~~~------------------------------------------~~------~~~-~~~~~~~~ 217 (394)
T TIGR00883 187 RRNLEETPVFEKAQEKHK------------------------------------------KK------RGP-IRETLTKH 217 (394)
T ss_pred HHhcCCChhHHHHHhccc------------------------------------------cc------cCC-HHHHHHhc
Confidence 556677654211100000 00 000 11111111
Q ss_pred chhHHHHHHHHHHHHHhhchhchhhhHHHHH-HhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHH
Q psy8366 294 IVRPFIMIMILFFITIIASLQPMRPFLVEIF-RTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGIN 371 (513)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 371 (513)
. +......... ............+.|.++ ++.|.+... +.......++..++.++.|++.||++||+.+.....+.
T Consensus 218 ~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~ 295 (394)
T TIGR00883 218 R-KPFLLGLGLV-IATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLA 295 (394)
T ss_pred h-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 1 1122222222 222223445556788887 457777766 67778888999999999999999999999776554444
Q ss_pred HHHH-HHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHH-HHHHHHHHHHHHHhhhh
Q psy8366 372 TFFT-LMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITA-ASSSVVNFISTKTYINL 449 (513)
Q Consensus 372 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~g~l 449 (513)
.+.. ..+.... ...+.+.......+.+.+. ....+...+.+.|.+|++.|+++.++.+ ....+|..++|.+.|.+
T Consensus 296 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l 372 (394)
T TIGR00883 296 ALLAVPLLMALL--DSGSFTLFFFLVLGLALIG-GMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAAL 372 (394)
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHH-HHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHH
Confidence 3332 2222111 1112232222233333332 2345666789999999999999999854 44567888999999999
Q ss_pred hhccc-hhHHHHHHHHH
Q psy8366 450 TSWFG-LHGTLFIYTLV 465 (513)
Q Consensus 450 ~~~~g-~~~~~~~~~~~ 465 (513)
.+..| +...++.....
T Consensus 373 ~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 373 VAMTGDWYAIGYYLAAL 389 (394)
T ss_pred HHHcCcchhHHHHHHHH
Confidence 99888 65555444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=248.79 Aligned_cols=338 Identities=23% Similarity=0.331 Sum_probs=243.0
Q ss_pred hhhcccccccchhhh-hhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHH
Q psy8366 45 FSLGMAFGMPTVVVG-VLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFF 123 (513)
Q Consensus 45 ~~~~~~~~~~~~~~p-~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 123 (513)
+...+......+.+| .+. +++|.++.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~------------~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~ 73 (352)
T PF07690_consen 6 FLSGFGFSIISPALPLYLA------------EELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFA 73 (352)
T ss_dssp HHHHHHHHHHHHHHH-HHH------------CCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------------HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhh
Confidence 334445555677888 777 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----hHHHH
Q psy8366 124 LGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----DWRTT 199 (513)
Q Consensus 124 ~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~ 199 (513)
++.++..++++++.++++|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++.++..+ +||+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~ 153 (352)
T PF07690_consen 74 LGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWA 153 (352)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCH
T ss_pred hHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccc
Confidence 99777777788889999999999999999999999999999999999999999999999999998887765 89999
Q ss_pred HHhhhHHHHHHHHH-HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcc
Q psy8366 200 VLISAIFPILTMIM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRK 278 (513)
Q Consensus 200 f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (513)
|++.+++.++..++ .++++++|+....+.+.++. +++
T Consensus 154 ~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~ 191 (352)
T PF07690_consen 154 FLISAILSLIAAILFILFLPEPPPPRERESPKESE------------------------------------------SKK 191 (352)
T ss_dssp HHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--------------------------------------------H
T ss_pred cccccchhhhhhhhHhhhhhhcccccccccccccc------------------------------------------ccc
Confidence 99999999888774 34455543311111110000 000
Q ss_pred hhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHH-HHhcCCC-chh-HHHHHHHHHHHHHhhhHHHHhh
Q psy8366 279 SSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEI-FRTFGLP-MKS-EWVLVLTGILSITGSFVSTITV 355 (513)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~g~l~ 355 (513)
+++..+.++.+++++..+..+....... ........+.|.+ .+..|.+ ... +....+..+..+++.++.+++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 267 (352)
T PF07690_consen 192 PKPLKPGFKSLFKNPVLWILLIAFFLFF----FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLS 267 (352)
T ss_dssp HHCCCH-CTHHHHHHCCHHHHHHHHHHH----HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhhhhhhhhHHH----HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001111333333333331222222221 1233356777776 4567777 444 7778889999999999999999
Q ss_pred cccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHH
Q psy8366 356 NKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASS 435 (513)
Q Consensus 356 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 435 (513)
||+++++..........+..+.+...... .+.........+.+.+. ....+....+..|..|++++|++.|+.+...
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 344 (352)
T PF07690_consen 268 DRFGRRRRLLIAILLLILGALGLLLLPFS--SSPVWLIIALFLIGFGF-GIVFPILFSLIQELVPPEYRGTAFGLFNSIG 344 (352)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHCCSHHH--CHHHHHHHHHHHHHHHH-HHHCHHHHHHHHCCCHTCHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999877776666666655555443311 11222333333333333 3446777789999999999999999999999
Q ss_pred HHHHHHHH
Q psy8366 436 SVVNFIST 443 (513)
Q Consensus 436 ~~g~~~~~ 443 (513)
++++.++|
T Consensus 345 ~~~~~igP 352 (352)
T PF07690_consen 345 SLGGIIGP 352 (352)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHCC
Confidence 99999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-29 Score=239.56 Aligned_cols=350 Identities=14% Similarity=0.112 Sum_probs=249.0
Q ss_pred HHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHH
Q psy8366 39 AQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILV 118 (513)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~ 118 (513)
..+...+..|+..+...+.+|.+. +++|+|+.+.|++.+.+++++.+++++.|++.||+|||++++++
T Consensus 7 ~~~~~f~~~G~~~~~~~~l~~~~~------------~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g 74 (410)
T TIGR00885 7 LITSLFALWGFANDITNPMVPQFQ------------QAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLG 74 (410)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH------------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 445566677788888889999999 89999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHh---chhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH-
Q psy8366 119 GFPFFLGWILLYL---AETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT- 194 (513)
Q Consensus 119 ~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~- 194 (513)
.++++++.+++.. .++++.+++.|++.|+|.|...+....++.+..|+++|++..++.+...++|..+++.++..+
T Consensus 75 ~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 75 LFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988654 458999999999999999999999999999999999999999999999998888887775432
Q ss_pred -----------------------------hHHHHHHhhhHHHHHHHHHHHhc--cCchhhhhhcCChHHHHHHHHHhhCC
Q psy8366 195 -----------------------------DWRTTVLISAIFPILTMIMIAFI--PESPTWLVSKGRLEEAERSLRWVRGW 243 (513)
Q Consensus 195 -----------------------------~wr~~f~~~~~~~~~~~~~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~ 243 (513)
+||++|++.+++.++..++..+. ||.++ ++ ++ ++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~-~~-~~-------- 219 (410)
T TIGR00885 155 LSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD-AK-QI-------- 219 (410)
T ss_pred hcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc-cc-cc--------
Confidence 59999999888777665544333 33110 00 00 00
Q ss_pred CchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHH
Q psy8366 244 SKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEI 323 (513)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (513)
+. ..+ .+.+.+++..+...+..+++.... .....|++.+
T Consensus 220 -------------------------------~~-----~~~-~~~~~~~~~~~~~~l~~f~yvg~e----~~~~s~l~~y 258 (410)
T TIGR00885 220 -------------------------------SF-----SAS-LSRLARIRHYREGVIAQFFYVGVQ----IMCWTFIIQY 258 (410)
T ss_pred -------------------------------cc-----hhh-HHHHHhChhHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 00 000 222233333333333333333332 2334667777
Q ss_pred HHhcCC--Cchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHH
Q psy8366 324 FRTFGL--PMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCF 400 (513)
Q Consensus 324 ~~~~g~--~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (513)
.++.+. +... .........+..+|+++++++.||+++|+.+.+...+..+..++..... .......+.+.+
T Consensus 259 ~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~------~~~~~~~l~~~g 332 (410)
T TIGR00885 259 AVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAG------GHVGLYCLTLCS 332 (410)
T ss_pred HhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC------ChHHHHHHHHHH
Confidence 665432 2222 3345555677889999999999999999988777777766655555432 223334444444
Q ss_pred HHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcc------chhHHHHHHHHH
Q psy8366 401 WVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWF------GLHGTLFIYTLV 465 (513)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~------g~~~~~~~~~~~ 465 (513)
++.+ ..+|..++...+..+++.+..+.++.... +|+++.|.+.|.+.|.. +++..|++...+
T Consensus 333 lf~s-~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~ 400 (410)
T TIGR00885 333 AFMS-LMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC 400 (410)
T ss_pred HHHH-HHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence 4443 44588889999998866654455555544 99999999999999954 366666654333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-29 Score=245.55 Aligned_cols=366 Identities=10% Similarity=0.077 Sum_probs=251.1
Q ss_pred HHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhc-----chhhH-H
Q psy8366 42 FLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYI-----GRKRL-M 115 (513)
Q Consensus 42 ~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~~-~ 115 (513)
...+..|+......+.+|... ++.|.+.+++|.+ +.....+ ++.+++|+++||+ ||||. +
T Consensus 19 ~l~~~~gl~~~~~~~~l~~~l------------~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~l 84 (491)
T PRK11010 19 ILGFASGLPLALTSGTLQAWM------------TVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWL 84 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHH
Confidence 334455667777788899988 7889999999997 4444444 6899999999999 99986 6
Q ss_pred HHHhHHHHHHHHHHHhc---hhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhh
Q psy8366 116 ILVGFPFFLGWILLYLA---ETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYA 192 (513)
Q Consensus 116 ~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~ 192 (513)
+.+.++.+++..++++. ++++.+.+.+++.|++.+...+...++..|++|+++|+++.++...+..+|.++++.++.
T Consensus 85 l~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~ 164 (491)
T PRK11010 85 LATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLAL 164 (491)
T ss_pred HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777887777775 478889999999999999999999999999999999999999999999999888875543
Q ss_pred -----hHhHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccc
Q psy8366 193 -----LTDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYV 267 (513)
Q Consensus 193 -----~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (513)
..|||..|++.+++.++..+..+++||+++.. .+.++.++
T Consensus 165 ~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~~~~~~~-------------------------------- 209 (491)
T PRK11010 165 WLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---PVPKTLEQ-------------------------------- 209 (491)
T ss_pred HHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---ccccchhh--------------------------------
Confidence 34899999999988877766666678864310 00000000
Q ss_pred cccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHH-HhcCCCchh-HHHH-HHHHHHH
Q psy8366 268 ADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIF-RTFGLPMKS-EWVL-VLTGILS 344 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~-~~~~~~~ 344 (513)
....+ ++.+++++..+.......+.... ......+.+.++ +..|++... +... ....++.
T Consensus 210 ------------~~~~~-l~~~~~~~~~~~~ll~~~l~~~~----~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~ 272 (491)
T PRK11010 210 ------------AVVAP-LRDFFGRNNAWLILLLIVLYKLG----DAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLAT 272 (491)
T ss_pred ------------hHHHH-HHHHHcCcCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 00011 22233333223222222222211 112223444444 568888876 6665 4556789
Q ss_pred HHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhh
Q psy8366 345 ITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVR 424 (513)
Q Consensus 345 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 424 (513)
+++.++.|+++||+++|+.+.++..+.++..+.+..... ...+.+.......+.....+.+ .+..+++..+..+++.+
T Consensus 273 iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~-~~~~~~~l~~~~~l~~~~~g~~-~~~~~a~~~~l~~~~~~ 350 (491)
T PRK11010 273 IVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI-TDKNLYSMGAAVFFENLCGGMG-TAAFVALLMTLCNKSFS 350 (491)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCCc
Confidence 999999999999999988777665555554433322221 1112222111222211112112 23345778888898899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeE
Q psy8366 425 GIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYF 475 (513)
Q Consensus 425 ~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 475 (513)
++..|+.+....+|..+++.+.|.+.|..||...|.+.+++++++.+....
T Consensus 351 ~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 351 ATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888888888877665543
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=241.89 Aligned_cols=340 Identities=11% Similarity=0.052 Sum_probs=238.3
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhcccccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEA 154 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~ 154 (513)
+++|++..++|++.+++.++..+++++.|+++||+|||++++++.++.+++.++.+++++++.++++|++.|.+.+...+
T Consensus 36 ~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 115 (395)
T PRK10054 36 RQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFST 115 (395)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999988887888
Q ss_pred chhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH---hHHHHHHhhhHHHHHHHHH-HHhccCchhhhhhcCCh
Q psy8366 155 PIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT---DWRTTVLISAIFPILTMIM-IAFIPESPTWLVSKGRL 230 (513)
Q Consensus 155 ~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~ 230 (513)
...++..|..|+++|+++.++.....++|..+++.++..+ +|+..|++.+++.++..+. .+++||+++ +++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~----~~~~ 191 (395)
T PRK10054 116 VLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSEK----AIAT 191 (395)
T ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcccc----cccc
Confidence 8899999999999999999999999999999988887765 8999999888887776553 344555421 0000
Q ss_pred HHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHh
Q psy8366 231 EEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITII 310 (513)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (513)
++ .+ ..+ .+..++++..+.......+......
T Consensus 192 ~~-~~----------------------------------------------~~~-~~~~~~~~~~~~~~~~~~l~~~~~~ 223 (395)
T PRK10054 192 ET-GS----------------------------------------------VWS-PSVLLQDKALLWFTCSGFLASFVSG 223 (395)
T ss_pred ch-hh----------------------------------------------hhh-hhhhccCceehHHHHHHHHHHHHHH
Confidence 00 00 000 1222233322222222222221111
Q ss_pred hchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCc
Q psy8366 311 ASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPG 389 (513)
Q Consensus 311 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
........|.+.. .+.+.+... +.......+......+..+++.||.++|+.+..+..+..++...+.... ++.
T Consensus 224 ~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~ 298 (395)
T PRK10054 224 AFASCISQYVMVV-ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG----NSL 298 (395)
T ss_pred HhhhhHHHHHHHh-cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc----hHH
Confidence 1111222232221 233444333 5566666666667778889999999999988888777776665554321 122
Q ss_pred hhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHH
Q psy8366 390 WIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLG 469 (513)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 469 (513)
+...+.....+.+. ....|.....+.+..|++.++++.+..+ ...+|..+||.+.|.+.|+.|+...+++.++...+.
T Consensus 299 ~~~~~~~~~~~~g~-~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~ 376 (395)
T PRK10054 299 LLWGMSAAVFTVGE-IIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAA 376 (395)
T ss_pred HHHHHHHHHHHHHH-HHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHH
Confidence 22222332222222 3335666678889999999999998765 677999999999999999999888787766666555
Q ss_pred Hhhe
Q psy8366 470 FIYI 473 (513)
Q Consensus 470 ~~~~ 473 (513)
.++.
T Consensus 377 ~~~~ 380 (395)
T PRK10054 377 WLLM 380 (395)
T ss_pred HHHH
Confidence 5543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=238.59 Aligned_cols=396 Identities=16% Similarity=0.183 Sum_probs=239.0
Q ss_pred hhhHHHHHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhh
Q psy8366 29 SACSQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEY 108 (513)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr 108 (513)
...+.+......++......+.....+.+++.+. .|+| +.....|+.+.+.++.+++.++.|+++|.
T Consensus 38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~------------~diG-~~~~~~w~~~~~~l~~av~~~~~G~LSDl 104 (599)
T PF06609_consen 38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYIN------------ADIG-GSDNWSWFSTAWTLASAVSFPFVGRLSDL 104 (599)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH------------HhcC-CCccchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344443333344444444455666677888888 8888 45788999999999999999999999999
Q ss_pred cchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHH
Q psy8366 109 IGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIF 188 (513)
Q Consensus 109 ~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~ 188 (513)
||||.+++.+.++..+|+++++.++|...++++..+.|+|.|.... ....++|..|.|.|+...++...........++
T Consensus 105 fGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~ 183 (599)
T PF06609_consen 105 FGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISP 183 (599)
T ss_pred hcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccH
Confidence 9999999999999999999999999999999999999999876654 456689999999998877776665555444566
Q ss_pred HHhhhH----hHHHHHHhhhHHHHHHHHH-HHhccCchhhhhhcC---ChHHHHHHHHHhhC-----------------C
Q psy8366 189 LIYALT----DWRTTVLISAIFPILTMIM-IAFIPESPTWLVSKG---RLEEAERSLRWVRG-----------------W 243 (513)
Q Consensus 189 ~l~~~~----~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~---~~~~~~~~~~~~~~-----------------~ 243 (513)
.++..+ +|||.|++.++...+.+++ .++.. +|++...++ ...+..+.+|.+.. .
T Consensus 184 ~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~-PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG 262 (599)
T PF06609_consen 184 LIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYF-PPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGG 262 (599)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhC-CCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC
Confidence 665544 8999999999988777663 33322 222211111 12233333443321 0
Q ss_pred C--chhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHH
Q psy8366 244 S--KKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLV 321 (513)
Q Consensus 244 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (513)
+ .+.+....+..+............. |.....++|..+ .+.+++++.+. ..+.+.+..... ++....+.|
T Consensus 263 ~~~~~W~Sa~VIa~lviG~~~Lv~F~~w---E~~~~~~~Pl~P-~~Lf~~~r~~~---~~lvi~fi~G~~-~~s~~~l~p 334 (599)
T PF06609_consen 263 YPYYPWKSAHVIAPLVIGFVLLVAFVVW---EWFGAPKDPLFP-HRLFKDRRGFA---ALLVISFISGMN-FFSVNILWP 334 (599)
T ss_pred CCCCCCCCccchhhHHHHHHHHHHHHHh---hhhccCCCCcCC-HHHhccchHHH---HHHHHHHHHHHH-HHHHHHHHH
Confidence 1 1111111111111111000000000 000000111222 23333322222 222222222222 233334444
Q ss_pred HHH-HhcCCCch----hHHHHHHHHHHHHHhhhHHHHhhcccCCch-HHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHH
Q psy8366 322 EIF-RTFGLPMK----SEWVLVLTGILSITGSFVSTITVNKLGKRG-MTLWSTGINTFFTLMLSICAMNLQWPGWIPLTI 395 (513)
Q Consensus 322 ~~~-~~~g~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (513)
... ..++.+.. .++.....+++..++..+.|.+..+++|-| .++++..++.+++.++.... .+ +.......
T Consensus 335 ~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~--~~-n~~~~i~~ 411 (599)
T PF06609_consen 335 QQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR--PD-NKNAAIAF 411 (599)
T ss_pred HHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc--CC-CcchHHHH
Confidence 433 34444432 256777788888899999999999888744 44566666665555555443 11 22222233
Q ss_pred HHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy8366 396 FCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTS 451 (513)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 451 (513)
..+.+.+.+.. .......++-..|++..|++.|+..+++.+|+.++..++..+..
T Consensus 412 ~~l~g~giG~~-~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~ 466 (599)
T PF06609_consen 412 LVLAGFGIGGI-LVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFT 466 (599)
T ss_pred HHHHHHhHHHH-HHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333222 23334566667899999999999999999999999988865443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-29 Score=238.61 Aligned_cols=330 Identities=15% Similarity=0.190 Sum_probs=228.6
Q ss_pred ccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHH
Q psy8366 51 FGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLY 130 (513)
Q Consensus 51 ~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 130 (513)
.....|.+|.+. +++|+++++.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.
T Consensus 7 ~~~~~p~~~~~~------------~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~ 74 (377)
T PRK11102 7 IDMYLPALPVIA------------ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACA 74 (377)
T ss_pred HHHHhccHHHHH------------HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHH
Confidence 344568889988 89999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHH
Q psy8366 131 LAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLISAIF 206 (513)
Q Consensus 131 ~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~ 206 (513)
++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++...+..+|..+++.++..+ +||+.|++.+++
T Consensus 75 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 154 (377)
T PRK11102 75 LAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALA 154 (377)
T ss_pred HHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888888888776544 999999998888
Q ss_pred HHHHHH-HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhh
Q psy8366 207 PILTMI-MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKL 285 (513)
Q Consensus 207 ~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (513)
.++..+ ..+++||+++. +++++ .+..+ ...+
T Consensus 155 ~~~~~~~~~~~~~~~~~~----~~~~~--------------~~~~~-----------------------------~~~~- 186 (377)
T PRK11102 155 AILAAALVFFFIPETLPK----ERRQP--------------FHLRT-----------------------------TIRN- 186 (377)
T ss_pred HHHHHHHHHHhCCccCcc----cccCC--------------CChHH-----------------------------HHHH-
Confidence 877665 44567775421 00000 00000 0011
Q ss_pred hhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHH-HhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchH
Q psy8366 286 LNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIF-RTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGM 363 (513)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 363 (513)
.+..++++......+. . ...+.+......+.|.++ +..|++... +....+..++.+++.++.+++.||+|+|+.
T Consensus 187 ~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~ 262 (377)
T PRK11102 187 FASLFRHKRVLGYMLA---S-GFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNM 262 (377)
T ss_pred HHHHHcChHHHHHHHH---H-HHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 2222222222221111 1 111222223334445444 457888766 788888899999999999999999999998
Q ss_pred HHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHH-HHHHHH
Q psy8366 364 TLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSS-VVNFIS 442 (513)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~ 442 (513)
+..+..+..+..+.+...... +...+...+......... ....+.......|..| +.++++.++.+.... ++..++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g 339 (377)
T PRK11102 263 LRFGLWIQFIMGIWLVVSALL-DLGFWALVVGVAAFVGCV-SMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVG 339 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHH-HHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHH
Confidence 888776654433333222111 111222222222222222 1223333456677766 889999999887654 555666
Q ss_pred HHHhh
Q psy8366 443 TKTYI 447 (513)
Q Consensus 443 ~~~~g 447 (513)
+.+.+
T Consensus 340 ~~~~~ 344 (377)
T PRK11102 340 ALLSL 344 (377)
T ss_pred HHHHh
Confidence 65543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=235.85 Aligned_cols=334 Identities=12% Similarity=0.095 Sum_probs=232.4
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhcccccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEA 154 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~ 154 (513)
+++|+|..+.|++.+.+.++..+.++++|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+...+
T Consensus 39 ~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~ 118 (400)
T PRK11646 39 DQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDP 118 (400)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred chhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH---hHHHHHHhhhHHHHHHHHH-HHhccCchhhhhhcCCh
Q psy8366 155 PIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT---DWRTTVLISAIFPILTMIM-IAFIPESPTWLVSKGRL 230 (513)
Q Consensus 155 ~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~ 230 (513)
...+++.|++|+++|+++.++......+|..+|+.++..+ +||+.|++.++..++..++ .++.||.+. +.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~----~~~~ 194 (400)
T PRK11646 119 PRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAYKL----STVR 194 (400)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcccc----cccc
Confidence 9999999999999999999999999888888888776655 9999999988877666543 444554210 0000
Q ss_pred HHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHh
Q psy8366 231 EEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITII 310 (513)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (513)
++. ..+ ++...+++............ .
T Consensus 195 ~~~------------------------------------------------~~~-~~~~~~~~~~~~~~~~~~~~----~ 221 (400)
T PRK11646 195 TPV------------------------------------------------REG-MTRVLRDKRFVTYVLTLTGY----Y 221 (400)
T ss_pred hhh------------------------------------------------HHH-HHHHHcCchHHHHHHHHHHH----H
Confidence 000 000 22222222222111111111 1
Q ss_pred hchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhc-ccCCchHHHHhhHHHHHHHHHHHHHHHhcCCC
Q psy8366 311 ASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVN-KLGKRGMTLWSTGINTFFTLMLSICAMNLQWP 388 (513)
Q Consensus 311 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (513)
........+.|.++++.+.++.. +....+.+++...+....+++.| |.+.++.+..+..+.+++..++.... +
T Consensus 222 ~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~-----~ 296 (400)
T PRK11646 222 MLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS-----N 296 (400)
T ss_pred HHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh-----h
Confidence 11112335677777765545444 66666666666655555555554 56666666666666666655444332 2
Q ss_pred chhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccc----hhHHHHHHHH
Q psy8366 389 GWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFG----LHGTLFIYTL 464 (513)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g----~~~~~~~~~~ 464 (513)
.+.......+.+.+. ....|...+++.+..|+++||++.|+.+....+|..+||.+.|.+.|..+ ....+...++
T Consensus 297 ~~~~~~~~~l~~~g~-~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~ 375 (400)
T PRK11646 297 LQQLFTLICLFYIGS-IIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGI 375 (400)
T ss_pred HHHHHHHHHHHHHHH-HHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHH
Confidence 222222222222222 23345666888899999999999999999999999999999999998753 2344555455
Q ss_pred HHHHHHh
Q psy8366 465 VSFLGFI 471 (513)
Q Consensus 465 ~~~~~~~ 471 (513)
+++++.+
T Consensus 376 ~~~~~~~ 382 (400)
T PRK11646 376 IGLITLL 382 (400)
T ss_pred HHHHHHH
Confidence 5555444
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-27 Score=229.83 Aligned_cols=351 Identities=13% Similarity=0.084 Sum_probs=225.1
Q ss_pred hcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhh-hhhhhHHHHHHhhhhcchhhHH-HHHhHHHHH
Q psy8366 47 LGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFL-FHPFGSIISGYFLEYIGRKRLM-ILVGFPFFL 124 (513)
Q Consensus 47 ~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~~-~~~~~~~~~ 124 (513)
.++......|.+|.... +++|+|.+++|++.+...+ +..++.++.|+ +||+||||.+ ..+.++.++
T Consensus 27 ~~~~~~~~~p~~~~~l~-----------~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~ 94 (393)
T PRK15011 27 TGIAGALQTPTLSIFLT-----------DEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVL 94 (393)
T ss_pred HHHHHHHHHHHHHHHHH-----------hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHH
Confidence 34444445566666432 7899999999999877655 55555555555 9999999875 556666678
Q ss_pred HHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCcccc--chhhhHhhHHHHHHHHHHHHHhhh----HhHHH
Q psy8366 125 GWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMR--GSLSLFAGAACNFGVFIIFLIYAL----TDWRT 198 (513)
Q Consensus 125 ~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~lG~~~~~~l~~~----~~wr~ 198 (513)
+..+.+++++++.+++.+.+.|...+...|...++..|+.++++| +...++.+++.++|.++++.++.. +|||+
T Consensus 95 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~ 174 (393)
T PRK15011 95 ACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTV 174 (393)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHH
Confidence 888888999999887665554444456788888888888776655 344577777777777777777654 49999
Q ss_pred HHHhhhHHHHHHHHH-HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhc
Q psy8366 199 TVLISAIFPILTMIM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQR 277 (513)
Q Consensus 199 ~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (513)
.|++.++..++..+. .+++||+++. + +.++ . +
T Consensus 175 ~f~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~-~----------------------------------------~-- 207 (393)
T PRK15011 175 MYLSAAVAFIVCGVMVWLFLPSMRKE---L-PLAT-G----------------------------------------T-- 207 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccCCC---C-cccc-c----------------------------------------c--
Confidence 999998887776654 5557876421 0 0000 0 0
Q ss_pred chhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhhhHHHHhh
Q psy8366 278 KSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGSFVSTITV 355 (513)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~ 355 (513)
... .+ .+++............ .........+.|.+++ +.|++... +.......++.+++.++.|+++
T Consensus 208 ----~~~-~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~ 276 (393)
T PRK15011 208 ----LEA-PR--RNRRDTLLLFVICTLM----WGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFA 276 (393)
T ss_pred ----ccc-cc--cccccHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00 0011111111111111 1112233456777664 57887665 6666666777888999999999
Q ss_pred cccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHH
Q psy8366 356 NKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASS 435 (513)
Q Consensus 356 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 435 (513)
||+++|+.+..+.....+....+.... +.+..+....+.....+ ...+....+..|..| ++++++.++.+...
T Consensus 277 dr~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~g-~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~ 349 (393)
T PRK15011 277 KRLGKRFLMRVAAVAGVCFYAGMLMAH-----SPAILLGLQLLNAIYIG-ILGGIGMLYFQDLMP-GQAGSATTLYTNTS 349 (393)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC-CCcchHHHHHHHHH
Confidence 999999877766554444333222111 22222222222222211 112333456788888 46999999999999
Q ss_pred HHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhhee
Q psy8366 436 SVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 436 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 474 (513)
++|..++|.+.|.+.+..|++..+.+.+++.+++.+..+
T Consensus 350 ~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK15011 350 RVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL 388 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888887777777666544
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-27 Score=230.01 Aligned_cols=334 Identities=14% Similarity=0.164 Sum_probs=231.1
Q ss_pred ccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHH
Q psy8366 49 MAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWIL 128 (513)
Q Consensus 49 ~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 128 (513)
+......+.+|.+. +++|.|+.+.+++.+++.+++.++++++|+++||+|||+++.++..+..++.++
T Consensus 22 ~~~~~~~p~~~~i~------------~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~ 89 (394)
T PRK11652 22 MAQTIYVPAIADMA------------RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLV 89 (394)
T ss_pred HHHHHHhccHHHHH------------HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH
Confidence 34445567789988 899999999999999999999999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh----HhHHHHHHhhh
Q psy8366 129 LYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL----TDWRTTVLISA 204 (513)
Q Consensus 129 ~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----~~wr~~f~~~~ 204 (513)
+.++++++.+++.|++.|++.+...+....+..|.+++++|+++.+....+..+|..+++.++.. .+||+.|++.+
T Consensus 90 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~ 169 (394)
T PRK11652 90 ALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLL 169 (394)
T ss_pred HHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 99999999999999999999988888888889999999999999999999888888777776654 38999999988
Q ss_pred HHHHHHHH-HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhh
Q psy8366 205 IFPILTMI-MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLS 283 (513)
Q Consensus 205 ~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (513)
++.++..+ ..++.||+++. ++++++. ..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~------------------------------------------------~~ 198 (394)
T PRK11652 170 LLGAGVTFSMARWMPETRPA---DARRTRV------------------------------------------------LA 198 (394)
T ss_pred HHHHHHHHHHHHhCCccCcc---ccchhHH------------------------------------------------HH
Confidence 87766554 45567876431 0000000 00
Q ss_pred hhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh-cCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCc
Q psy8366 284 KLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT-FGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKR 361 (513)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 361 (513)
. ++...+++..+.......... .+......+.+.++++ .|++... ++......++.++++.+.+++.||.+++
T Consensus 199 ~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 273 (394)
T PRK11652 199 S-YRTLLSNRRFNCYLLMLIGTL----AGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL 273 (394)
T ss_pred H-HHHHHcChHHHHHHHHHHHHH----HHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 222233332232222221111 1122223344555554 7877666 6767777788888889999999988733
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHH
Q psy8366 362 GMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFI 441 (513)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 441 (513)
... ......++.+.+.........+.+.......+.+.+. ....+...+...|..| ++++++.++.+....+|+.+
T Consensus 274 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~ 349 (394)
T PRK11652 274 MWQ--SVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGA-GMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGL 349 (394)
T ss_pred HHH--HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHH
Confidence 222 2222222222222111111112233333333333333 2345666677788887 68899999999999999999
Q ss_pred HHHHhhhhhhccc
Q psy8366 442 STKTYINLTSWFG 454 (513)
Q Consensus 442 ~~~~~g~l~~~~g 454 (513)
++.+.+.+.+...
T Consensus 350 ~~~~~~~~~~~~~ 362 (394)
T PRK11652 350 AALLSAMLPQTGQ 362 (394)
T ss_pred HHHHHHHccCCch
Confidence 9999988766533
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=227.20 Aligned_cols=326 Identities=13% Similarity=0.087 Sum_probs=230.2
Q ss_pred ccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHH
Q psy8366 51 FGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLY 130 (513)
Q Consensus 51 ~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 130 (513)
....++.+|.+. +++|+|.++.+++.+++.+++.+++++.|+++||+|||+++.++.++..++.+.+
T Consensus 16 ~~~~~~~lp~l~------------~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~- 82 (355)
T TIGR00896 16 LTSVGPLLPQIR------------SALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR- 82 (355)
T ss_pred cccCcccHHHHH------------HHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-
Confidence 355678999999 9999999999999999999999999999999999999999999999998888887
Q ss_pred hchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH------hHHHHHHhhh
Q psy8366 131 LAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT------DWRTTVLISA 204 (513)
Q Consensus 131 ~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~------~wr~~f~~~~ 204 (513)
.+++++.+++.|++.|++.+...+....++.|++| ++|+++.++...+.++|..+++.+...+ +||+.|.+.+
T Consensus 83 ~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~ 161 (355)
T TIGR00896 83 SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWA 161 (355)
T ss_pred HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 78899999999999999999888888888999885 6899999999998888888877665433 3999988776
Q ss_pred HHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhh
Q psy8366 205 IFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSK 284 (513)
Q Consensus 205 ~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (513)
++.++... .++|+.++ +.+.++ ..+ ...
T Consensus 162 ~~~~~~~~--~~~~~~~~----~~~~~~----------------------------------------~~~------~~~ 189 (355)
T TIGR00896 162 LPALLALL--AWIPQVRR----RVAANQ----------------------------------------TTT------RLT 189 (355)
T ss_pred HHHHHHHH--HHhhhhcc----ccCCCC----------------------------------------CCC------CCC
Confidence 65443322 23444321 000000 000 000
Q ss_pred hhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccC-Cch
Q psy8366 285 LLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLG-KRG 362 (513)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g-~~~ 362 (513)
.+..++++..+...+. .............+.|.++++.|.+... +...+...++.++++++.|++.||++ ||+
T Consensus 190 -~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~ 264 (355)
T TIGR00896 190 -PVRIWRSPLAWQVTVF----FGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRG 264 (355)
T ss_pred -CchhhcCHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchH
Confidence 1122222222222111 1122222334557888888888888766 78888899999999999999999995 555
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhcc-ccchhhhhHHHHHHHHHHHHHHHH
Q psy8366 363 MTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSE-VFPLQVRGIASGITAASSSVVNFI 441 (513)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~g~~~~~~~~g~~~ 441 (513)
.+..+..+..++.+.+.+.. +..... ...+.+.+. ....+...+...+ ..++++++...++.+...+++..+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~l~g~~~-g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (355)
T TIGR00896 265 IVAVLAVLQLVGLCGLLFAP-----MHGLWA-WALVLGLGQ-GGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAAL 337 (355)
T ss_pred HHHHHHHHHHHHHHHHHHhh-----hhHHHH-HHHHHHHhh-hhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666655554432 122111 222222222 2334444454444 344577899999999999999999
Q ss_pred HHHHhhhhhhccc
Q psy8366 442 STKTYINLTSWFG 454 (513)
Q Consensus 442 ~~~~~g~l~~~~g 454 (513)
+|.+.|.+.|..|
T Consensus 338 gp~~~G~l~~~~g 350 (355)
T TIGR00896 338 GPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-27 Score=225.61 Aligned_cols=347 Identities=10% Similarity=-0.014 Sum_probs=244.6
Q ss_pred ccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHH----HHHhHHHHH
Q psy8366 49 MAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLM----ILVGFPFFL 124 (513)
Q Consensus 49 ~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~----~~~~~~~~~ 124 (513)
...+...|.+|.+. +++|.|..++|++.+++.+...++++++|+++||+|||+.. ..+..+..+
T Consensus 18 ~~~~~~~p~l~~~l------------~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~ 85 (382)
T TIGR00902 18 CAYGIFLPFFPAWL------------KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA 85 (382)
T ss_pred HHHHHHHHHHHHHH------------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 44566678899999 89999999999999999999999999999999999985432 233222222
Q ss_pred HHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHH
Q psy8366 125 GWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----DWRTTV 200 (513)
Q Consensus 125 ~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f 200 (513)
.++..+++++.+++.|+++|.+.+...|...++..++ .++|++..+....+.++|.++++.++..+ |||..|
T Consensus 86 --~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f 161 (382)
T TIGR00902 86 --AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNIL 161 (382)
T ss_pred --HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHH
Confidence 3445788999999999999999998899988887665 57789999999888888888887776554 999999
Q ss_pred HhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchh
Q psy8366 201 LISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSS 280 (513)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (513)
++.++..++.. ..+.++|+++. +++.++ . ++.
T Consensus 162 ~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~-~----------------------------------------~~~--- 193 (382)
T TIGR00902 162 AILTAGLAFML-IGFLIKPTIPP---KDAIPE-D----------------------------------------ESQ--- 193 (382)
T ss_pred HHHHHHHHHHH-HHHHcCCCCCC---Cccccc-c----------------------------------------ccc---
Confidence 88765533322 33333443210 000000 0 000
Q ss_pred hhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccC
Q psy8366 281 QLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLG 359 (513)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g 359 (513)
+..+ ...+++++..+.......+. .........+.+.++++.|.+... +....+..++.+++.++.+++.||++
T Consensus 194 ~~~~-~~~~l~~~~~~~~l~~~~l~----~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g 268 (382)
T TIGR00902 194 GDSA-FIALLKNPMNLRFLAAVCLI----QGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCS 268 (382)
T ss_pred cchh-HHHHHcChHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCC
Confidence 0011 22333333333322222222 222444556778888888988876 77888889999999999999999999
Q ss_pred CchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHH-HHHHH
Q psy8366 360 KRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAA-SSSVV 438 (513)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~g 438 (513)
+|+.+.++.....+....+.... +.+.......+.+...+ ...+....++.+. |+++++++.++++. ...+|
T Consensus 269 ~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~q~l~g~~~~-~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g 341 (382)
T TIGR00902 269 ARDLLLISAIACVGRWAIIGAIE-----AFPLIFLLQILHCGTFA-VCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGL 341 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHh-----hHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHH
Confidence 99999999988888877776543 34444444444444443 3345555788887 98999999999874 56799
Q ss_pred HHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhh
Q psy8366 439 NFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIY 472 (513)
Q Consensus 439 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 472 (513)
..++|.+.|.+.|..|. ..+++.+++.+++.++
T Consensus 342 ~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 342 IAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 99999999999999985 5677777777766543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-28 Score=231.40 Aligned_cols=330 Identities=16% Similarity=0.191 Sum_probs=218.0
Q ss_pred ccccccchhhhh-hcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHH
Q psy8366 49 MAFGMPTVVVGV-LDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWI 127 (513)
Q Consensus 49 ~~~~~~~~~~p~-i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 127 (513)
.......+.+|. +. +++|+|+.+.+++.+++.+++.++++++|+++||+|||+.++++.++.+++.+
T Consensus 15 ~~~~~~~~~~~~~~~------------~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 15 SVWFAFSPLAVQMIK------------DDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred HHHHHhHHhhhHHHH------------HHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 344556788885 77 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHhch-hHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHH----HHHhhh---------
Q psy8366 128 LLYLAE-TVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFII----FLIYAL--------- 193 (513)
Q Consensus 128 ~~~~~~-~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~----~~l~~~--------- 193 (513)
++++++ +++.+++.|+++|++.+ ..+....+++|++|+++|+++.++.....++|..++ +.+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~ 161 (366)
T TIGR00886 83 WAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA 161 (366)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999 99999999999999965 456678899999999999999999886555555444 444332
Q ss_pred -HhHHHHH-HhhhHHHHHHHH-HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhcccccccccc
Q psy8366 194 -TDWRTTV-LISAIFPILTMI-MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADS 270 (513)
Q Consensus 194 -~~wr~~f-~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (513)
.+||+.| +..+++..+..+ ...+.+|+|+. +++++..+ ..+ ...
T Consensus 162 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~--~~~----------------------- 208 (366)
T TIGR00886 162 HLAWGWAFVIVPAGILLLPALLIFFVGADTPPG----KPATGKLS----FKG--ARW----------------------- 208 (366)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhcccCCcc----cccchhcc----ccc--ccc-----------------------
Confidence 2799999 444555444444 44556666531 11000000 000 000
Q ss_pred ccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhh
Q psy8366 271 EYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGS 348 (513)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~ 348 (513)
..+++ ......+.+++++ .+...+..... .........+.+.+++ ..|++... +....+..+..++++
T Consensus 209 --~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 278 (366)
T TIGR00886 209 --SVGTG---ALGDQLKVFRDRH-TWILALLYSVT----FGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLAR 278 (366)
T ss_pred --cccch---hHHHHHHHHhccc-hhhHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHh
Confidence 00000 0011122222322 22222222211 1123344566777775 46887766 677778888999999
Q ss_pred hHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCC-CchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHH
Q psy8366 349 FVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQW-PGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIA 427 (513)
Q Consensus 349 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 427 (513)
++.|++.||+|+|+.+..+......+..++.... .+. +.+.............+ ...+..+....+..| +++|++
T Consensus 279 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~-~~~g~~ 354 (366)
T TIGR00886 279 PLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGL--VSPLSLAVFIVLFVALFFFSG-AGNGSTFALVPHIFR-RATGAV 354 (366)
T ss_pred hccchHHHhhccchhHHHHHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHHHHhc-cccchhhhcchhhch-hhcccH
Confidence 9999999999999887777666555554444322 111 12222222222223332 233455678888877 799999
Q ss_pred HHHHHHHHHHH
Q psy8366 428 SGITAASSSVV 438 (513)
Q Consensus 428 ~g~~~~~~~~g 438 (513)
.|+.+..+++|
T Consensus 355 ~g~~~~~~~~g 365 (366)
T TIGR00886 355 SGLVGAIGNLG 365 (366)
T ss_pred HHHHHHhccCC
Confidence 99999888765
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=228.66 Aligned_cols=351 Identities=11% Similarity=0.019 Sum_probs=230.2
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcch-hhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGR-KRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCE 153 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~ 153 (513)
+++|++.+++|++.+++.++..++++++|.++||+|| |+++.++.++.+++..+..+.++++.+++.|++.|++.+...
T Consensus 31 ~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (418)
T TIGR00889 31 KTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTI 110 (418)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHH
Confidence 7899999999999999999999999999999999965 778898999998999999999999999999999999877676
Q ss_pred cchhhhhh--------ccCCccccchhhhHhhHHHHHHHHHHHHHhhhHhHHHHHHhhhHHHHHHHHHHHhccCchhhhh
Q psy8366 154 APIISYIG--------EISEPRMRGSLSLFAGAACNFGVFIIFLIYALTDWRTTVLISAIFPILTMIMIAFIPESPTWLV 225 (513)
Q Consensus 154 ~~~~~~~~--------~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~ 225 (513)
+...++.. |......|.|..|. .++.+|+.+++.+.....|+ +|++.+++.++..++.+++||+|+.
T Consensus 111 ~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~--lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~~~e~~~~-- 185 (418)
T TIGR00889 111 ALTNSISYANLPQAGLDVVTDFPPIRVMGT--IGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALTLPDIPVA-- 185 (418)
T ss_pred HHHHHHHHHHHhhcCCCchhcCCCeeeehh--HHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhcCCCCCCC--
Confidence 66555432 22333345555553 34555555555442222354 4556666666655556678887531
Q ss_pred hcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHH
Q psy8366 226 SKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILF 305 (513)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (513)
+++++...+ +. ...+ ....++++..+..+...++.
T Consensus 186 -~~~~~~~~~---------------------------------------~~----~~~~-~~~~~k~~~~~~~~~~~~~~ 220 (418)
T TIGR00889 186 -KSTAKMSIK---------------------------------------VM----LGLD-AFILFKNKRMAIFFFFSMLL 220 (418)
T ss_pred -ccccccCHH---------------------------------------HH----hhhh-HHHHhcCCCeeeHHHHHHHH
Confidence 100000000 00 0001 11223333222222222222
Q ss_pred HHHHhhchhchhhhHHHHHHhcCCCc--------hh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHH
Q psy8366 306 FITIIASLQPMRPFLVEIFRTFGLPM--------KS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTL 376 (513)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 376 (513)
.. .......+.+.++++.|.++ .. +....+..+..+++.++.|++.||+|+|+.+..+..+.+++..
T Consensus 221 ~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~ 296 (418)
T TIGR00889 221 GA----PLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFG 296 (418)
T ss_pred Hh----HHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 11 12223355666666655442 23 6777888889999999999999999999999998888877765
Q ss_pred HHHHHHHhcCCCchh-hHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHH-HHHHHHHHHHHHHhhhhhhcc-
Q psy8366 377 MLSICAMNLQWPGWI-PLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITA-ASSSVVNFISTKTYINLTSWF- 453 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~g~l~~~~- 453 (513)
++.... .....+. ..+...+.+... ....+....++.|.+|++.|+++.|+.+ ....+|.+++|.+.|.+.+..
T Consensus 297 l~~~~~--~~~~~~~~l~l~~~l~g~~~-~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g 373 (418)
T TIGR00889 297 FFAYGD--PEYFGYALLFLSMIVYGCAF-DFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF 373 (418)
T ss_pred HHHHcC--cchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 554421 0000111 122222222222 2334555578899999999999999997 567899999999999999984
Q ss_pred -----chhHHHHHHHHHHHHHHhheeEEcccCCC
Q psy8366 454 -----GLHGTLFIYTLVSFLGFIYIYFYVPETED 482 (513)
Q Consensus 454 -----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (513)
||+..|.+.+++.+++.++.+++.+++++
T Consensus 374 ~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 374 AYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 57888888888877777766666665543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-28 Score=233.67 Aligned_cols=352 Identities=13% Similarity=0.081 Sum_probs=214.5
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHH---hch-----hHHHHHHHHHHhh
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLY---LAE-----TVSIIMLGTVCMG 146 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~~-----~~~~l~~~r~l~G 146 (513)
+++|++..+.|++.+++.++..++++++|+++||+|||++++++..+.+++..... .++ .....++++++.|
T Consensus 39 ~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (420)
T PRK09528 39 DINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLG 118 (420)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56999999999999999999999999999999999999999887666654433221 111 1111233344444
Q ss_pred ccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH---hHHHHHHhhhHHHHHHHHHHHhcc-Cchh
Q psy8366 147 LSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT---DWRTTVLISAIFPILTMIMIAFIP-ESPT 222 (513)
Q Consensus 147 ~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~wr~~f~~~~~~~~~~~~~~~~~~-e~p~ 222 (513)
.+.....+....+..+ . .+++++..+......++|..+++.+++.+ +|++.|++.+++.++..++.++++ |.++
T Consensus 119 ~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 196 (420)
T PRK09528 119 FGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPDAPS 196 (420)
T ss_pred hhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcccccccc
Confidence 4433333333333322 2 34567777777777777777777776655 899999998888877766555543 3321
Q ss_pred hhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHH
Q psy8366 223 WLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIM 302 (513)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (513)
... .++++ ++ +++ ....++ ....++++..+...+..
T Consensus 197 ~~~--~~~~~-~~-------------------------------------~~~---~~~~~~-~~~~l~~~~~~~l~l~~ 232 (420)
T PRK09528 197 TAK--VANAL-GA-------------------------------------NAS---AVSLKD-ALALLKLPKFWFLVLYV 232 (420)
T ss_pred hhh--hccch-hc-------------------------------------ccc---cccHHH-HHHHccCCCeEeehHHH
Confidence 000 00000 00 000 000111 22222333222222222
Q ss_pred HHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHH
Q psy8366 303 ILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSIC 381 (513)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 381 (513)
................|...++.+.+.+... +....+..+...++.++.|++.||+++|+.+..+..+.++..+++.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~ 312 (420)
T PRK09528 233 IGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc
Confidence 1111111111112223333333333444444 677788888889999999999999999999888888777766665543
Q ss_pred HHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHH-HHHHHHHHHHHHHHHhhhhhhccchhHHHH
Q psy8366 382 AMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGI-TAASSSVVNFISTKTYINLTSWFGLHGTLF 460 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 460 (513)
. +.+.......+.+... ....+....++.|.+|++.+++..+. .++...+|.+++|.+.|.+.|..|++..|.
T Consensus 313 ~-----~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~ 386 (420)
T PRK09528 313 T-----GPLEVSILKLLHAFEV-PFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYL 386 (420)
T ss_pred c-----cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHH
Confidence 2 3333332222222222 12223344677888899999888766 677888999999999999999999999999
Q ss_pred HHHHHHHHHHhheeEEcc
Q psy8366 461 IYTLVSFLGFIYIYFYVP 478 (513)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~ 478 (513)
+.+++.++..++.+...+
T Consensus 387 ~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 387 ILGGIVLLFTLISVFTLS 404 (420)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 888887776655544433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-27 Score=225.97 Aligned_cols=362 Identities=12% Similarity=0.113 Sum_probs=244.1
Q ss_pred HHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhc-----chhh-HH
Q psy8366 42 FLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYI-----GRKR-LM 115 (513)
Q Consensus 42 ~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~-~~ 115 (513)
.+.+..|...+.....+|.+. ++.|+|.+++|++..+... .+..+++|+++||+ |||| .+
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l------------~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l 71 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWM------------TVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWL 71 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHH------------HHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHH
Confidence 344556777788888999999 7889999999999777776 59999999999999 8876 68
Q ss_pred HHHhHHHHHHHHHHHhc---hhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhh
Q psy8366 116 ILVGFPFFLGWILLYLA---ETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYA 192 (513)
Q Consensus 116 ~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~ 192 (513)
+++.++.+++..+.++. .+++.+++..++.++..+...++..+++.|++|+++|+++.++...+..+|.++++.++.
T Consensus 72 ~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~ 151 (402)
T PRK11902 72 LLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLAL 151 (402)
T ss_pred HHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHH
Confidence 88888888888887776 357888888888899889899999999999999999999999999999999888877543
Q ss_pred h-----HhHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccc
Q psy8366 193 L-----TDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYV 267 (513)
Q Consensus 193 ~-----~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (513)
. .|||..|++.+++.++..+..+++||+++. +++.++..+ +
T Consensus 152 ~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~~~~------------~------------------- 197 (402)
T PRK11902 152 WLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVP---ARPPRSLGE------------A------------------- 197 (402)
T ss_pred HHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCccc---ccccchhHH------------H-------------------
Confidence 3 389999999988877666655667776431 000000000 0
Q ss_pred cccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHH-HHHH
Q psy8366 268 ADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTG-ILSI 345 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~-~~~~ 345 (513)
.... ++.+++++..+..+....+......... ....+.+.++.|++... +......+ ++.+
T Consensus 198 -------------~~~~-~~~l~~~~~~~~~l~~~~l~~~~~~~~~---~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i 260 (402)
T PRK11902 198 -------------VVGP-LRDFFSRRGAWALLLLIVLYKLGDAFAG---SLSTTFLIRGAGFSAGEVGIVNKTLGLAATI 260 (402)
T ss_pred -------------HHHH-HHHHHhCcCHHHHHHHHHHHHhHHHHHH---HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHH
Confidence 0111 3344555544444433333222211111 12223344567888776 66654444 5688
Q ss_pred HhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHH---HHHHHhccccchhhhhhccccchh
Q psy8366 346 TGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCT---CFWVSGYGMLPLPWMLLSEVFPLQ 422 (513)
Q Consensus 346 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~ 422 (513)
++.++.+++.||+++|+.+..+..+..+..+.+...... ..+.+.......+ ...............++.+.+|.+
T Consensus 261 ~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 339 (402)
T PRK11902 261 VGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT-PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSAT 339 (402)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH
Confidence 999999999999999988776666655554433322211 1122322222211 111221223444456777777755
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhhe
Q psy8366 423 VRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYI 473 (513)
Q Consensus 423 ~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 473 (513)
. .++.+....++..+++.+.|.+.|..|+...|.+.+++++++.++.
T Consensus 340 ~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 340 Q----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 4 4555556667777777799999999999998888888887776654
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-28 Score=235.17 Aligned_cols=401 Identities=18% Similarity=0.233 Sum_probs=273.2
Q ss_pred HhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHH
Q psy8366 44 LFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFF 123 (513)
Q Consensus 44 ~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 123 (513)
.+.+|+.... +...+.+. ++++.+.++++|+.++....+.+.+|+.+.+.||+|.|.+.+.|.++.+
T Consensus 56 ~~~~g~~~~~-Gv~~~~~~------------~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 56 LSTDGLINSF-GLLFEELM------------DYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAA 122 (509)
T ss_pred Hhhhcchhee-hhhHHHHH------------HHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHH
Confidence 3334444433 36778888 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchhHHHHHHH-HHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----hHHH
Q psy8366 124 LGWILLYLAETVSIIMLG-TVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----DWRT 198 (513)
Q Consensus 124 ~~~~~~~~~~~~~~l~~~-r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~ 198 (513)
+|.++.+|++++|++++. -++.|+|.|..+.....++..++ +|+|+.+.|+...+.++|..+-+.+..++ |||+
T Consensus 123 ~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~ 201 (509)
T KOG2504|consen 123 LGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRG 201 (509)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHH
Confidence 999999999999988874 69999999999999999999888 88999999999999999998888776665 9999
Q ss_pred HHHhhhHHHHHHHHHHHhc-cCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhcccc-ccccccccchhh
Q psy8366 199 TVLISAIFPILTMIMIAFI-PESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSAT-LYVADSEYTTDQ 276 (513)
Q Consensus 199 ~f~~~~~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 276 (513)
.+++.+.+.+-..+....+ |.+++. .+.+++ ..+......+......+.....+...... ........++.+
T Consensus 202 ~~l~~~~~~l~~~~~~~~~rp~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (509)
T KOG2504|consen 202 ALLIFGGISLNVLVAGALLRPLSPPK----KPNEEK--DLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGP 275 (509)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcCC----Cchhhh--hhccccccccccccccccccccCCCCCCcccccchhhhhhCC
Confidence 9999998887766654443 433321 111000 00000000000000000000000000000 000000000000
Q ss_pred cchh--hhhhhh----hhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhh
Q psy8366 277 RKSS--QLSKLL----NYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSF 349 (513)
Q Consensus 277 ~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 349 (513)
++.. +.+... ..+++. +.++...........++.....+++.+.+..|++... +...++.++..+++++
T Consensus 276 ~~~~~~~~~~~~~~~d~~ll~~----~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi 351 (509)
T KOG2504|consen 276 DKWRNSPLQAFLSMLDLSLLKD----PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRI 351 (509)
T ss_pred ccccccchhhhhhhhhHHHHcC----chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhh
Confidence 0000 011101 122222 3344444455555555667778889888889998877 7899999999999999
Q ss_pred HHHHhhcccCCch--HHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHH
Q psy8366 350 VSTITVNKLGKRG--MTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIA 427 (513)
Q Consensus 350 ~~g~l~d~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 427 (513)
+.|++.|+...++ ...++.+..+++.+.+... ..+..+...+++.+.....+.......+.|+.+.++-..+
T Consensus 352 ~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a 425 (509)
T KOG2504|consen 352 ILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNA 425 (509)
T ss_pred hhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchH
Confidence 9999999988544 3445555555555444333 2334444444443333344455555688999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHHHHHhhee
Q psy8366 428 SGITAASSSVVNFISTKTYINLTSWFG-LHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 428 ~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~ 474 (513)
.|+...+..++..+||++.|.+.|.+| |...|...++..+++..+.+
T Consensus 426 ~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~ 473 (509)
T KOG2504|consen 426 YGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLL 473 (509)
T ss_pred HHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHH
Confidence 999999999999999999999999998 88888888887777765433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-26 Score=218.67 Aligned_cols=346 Identities=11% Similarity=0.006 Sum_probs=230.6
Q ss_pred ccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchh----hHHHHHhHHHHH
Q psy8366 49 MAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRK----RLMILVGFPFFL 124 (513)
Q Consensus 49 ~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr----~~~~~~~~~~~~ 124 (513)
...+...|.+|.+. +|+|.|..++|++.+++.++..++++++|++.||+||| +.+.++..+.
T Consensus 18 ~~~g~~~p~l~~~l------------~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~-- 83 (382)
T PRK11128 18 FAYGVFLPFWSVWL------------KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF-- 83 (382)
T ss_pred HHHHHHhhhHHHHH------------HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--
Confidence 34456668888888 88999999999999999999999999999999999984 3333332222
Q ss_pred HHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh----HhHHHHH
Q psy8366 125 GWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL----TDWRTTV 200 (513)
Q Consensus 125 ~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----~~wr~~f 200 (513)
.......+++++.+++.|++.|++.+...+...++..++ .++|++..+......++|..+||.++.. +|||..|
T Consensus 84 ~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f 161 (382)
T PRK11128 84 AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAIL 161 (382)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHH
Confidence 223344568899999999999999998999888887776 4567777777777777777777766654 4999999
Q ss_pred HhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchh
Q psy8366 201 LISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSS 280 (513)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (513)
++.++..++..+..++.||+++ +++.++. .++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----------------------------------------~~~--- 193 (382)
T PRK11128 162 WILTAGVASMLLGQLLRPTIMP----QGESRQQ-----------------------------------------ESA--- 193 (382)
T ss_pred HHHHHHHHHHHHHHHccCCCCC----ccccccc-----------------------------------------ccc---
Confidence 8887655554444444454321 0000000 000
Q ss_pred hhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccC
Q psy8366 281 QLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLG 359 (513)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g 359 (513)
...+ ++.+++++..+.......+.... ......+.+.+.++.|.+... +.......++.++..++.+++.||++
T Consensus 194 ~~~~-~~~i~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~ 268 (382)
T PRK11128 194 GWPA-WKALLKEPTVWRFLLCVSLLQGS----HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWS 268 (382)
T ss_pred ccch-HHHHHcChhHHHHHHHHHHHHHH----hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 0011 33344444333333322222221 223345666777778888765 77777888889999999999999999
Q ss_pred CchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHH-HHHH
Q psy8366 360 KRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAAS-SSVV 438 (513)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g 438 (513)
+|+.+..+..+.++..+.+.... +.+...+...+.+...+. ..+....+..+. +++++++..++.+.. ..+|
T Consensus 269 ~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g 341 (382)
T PRK11128 269 ARDLLLLSAICGVVRWGLMGSTT-----ALPWLIVIQILHCGTFTV-CHLAAMRYIAAR-PGSEVIRLQALYSALAMGGS 341 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHH
Confidence 99998888887777665554432 344434333333333322 234444566666 556678889988744 4677
Q ss_pred HHHHHHHhhhhhhccchhHHHHHHHHHHHHHHh
Q psy8366 439 NFISTKTYINLTSWFGLHGTLFIYTLVSFLGFI 471 (513)
Q Consensus 439 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 471 (513)
..++|.+.|.+.|..|. ..++..+++.+++.+
T Consensus 342 ~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 342 IAIMTVLSGFLYQHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 79999999999999886 456666655555443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-26 Score=219.67 Aligned_cols=356 Identities=13% Similarity=0.128 Sum_probs=224.3
Q ss_pred ccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHH-
Q psy8366 51 FGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILL- 129 (513)
Q Consensus 51 ~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~- 129 (513)
.....+.+|.... +++|.+..+.|++.+++.++..+++++.|+++||+|||+.++.+....+++....
T Consensus 18 ~~~~~~~~~~~~~-----------~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~ 86 (396)
T TIGR00882 18 MSAYFPFFPIWLH-----------DVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFF 86 (396)
T ss_pred HHHHHHHHHHHHH-----------HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 3444466666542 5789999999999999999999999999999999999999988777665544332
Q ss_pred --Hhc-----hhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH---hHHHH
Q psy8366 130 --YLA-----ETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT---DWRTT 199 (513)
Q Consensus 130 --~~~-----~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~wr~~ 199 (513)
.+. +.+..+++.|++.|++.+...+....+..|..+ ++++..+......++|..+++.++..+ +||++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~ 164 (396)
T TIGR00882 87 IYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIV 164 (396)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHH
Confidence 122 223445677899999998888888888777543 334455555555566666666665543 99999
Q ss_pred HHhhhHHHHHHHHHHHh-ccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcc
Q psy8366 200 VLISAIFPILTMIMIAF-IPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRK 278 (513)
Q Consensus 200 f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (513)
|++.+++.++..++.+. .||+|+. ++.++. .+ .++++
T Consensus 165 f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~----~~-----------------------------~~~~~-- 202 (396)
T TIGR00882 165 FWLGSGFALILMLLLMFAKPKAPSS-------ATVANA----LG-----------------------------ANASA-- 202 (396)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchh-------hhhhcc----cc-----------------------------cccCC--
Confidence 99998888877665444 3443320 000000 00 00000
Q ss_pred hhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh----cCCCchh-HHHHHHHHHHHHHhhhHHHH
Q psy8366 279 SSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT----FGLPMKS-EWVLVLTGILSITGSFVSTI 353 (513)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~-~~~~~~~~~~~~~~~~~~g~ 353 (513)
++.++ ...+.+++..+...+....... .+.....+.+.++++ .+.+... +....+..+...++.+..++
T Consensus 203 -~~~~~-~~~~l~~~~~~~~~l~~~~~~~----~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~ 276 (396)
T TIGR00882 203 -FSLKL-ALELFRQRKFWMFVLYVVGVAC----VYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPL 276 (396)
T ss_pred -CCHHH-HHHHHcCCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112 2333333333222222111111 112222234444433 2334333 67777788888899999999
Q ss_pred hhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHH-HH
Q psy8366 354 TVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGI-TA 432 (513)
Q Consensus 354 l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~ 432 (513)
+.||+++|+.+.++..+.++...+..... +.+.......+.+... .........+..+..|++.++++.+. .+
T Consensus 277 l~~r~g~~~~l~~~~~l~~l~~~~~~~~~-----~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~at~~~~~~~ 350 (396)
T TIGR00882 277 IINRIGAKNALLIAGTIMSVRIIGSSFAT-----TALEVVILKMLHAFEV-PFLLVGCFKYITSQFDVRLSATIYLIGFQ 350 (396)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCcceEEEeehHHHH
Confidence 99999999998888877777665544322 3333333322222221 11112233455666777777777766 67
Q ss_pred HHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhhe
Q psy8366 433 ASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYI 473 (513)
Q Consensus 433 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 473 (513)
....+|+++++.+.|.+.|..|++..|.+.+++.++..++.
T Consensus 351 ~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 351 FAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999888887766543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-26 Score=249.02 Aligned_cols=345 Identities=12% Similarity=0.067 Sum_probs=232.2
Q ss_pred CCcccch-hhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHH---HhHHHHHHHHHHHhchhHHHHHHHHHHhhcccc
Q psy8366 75 PDLILSD-EQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMIL---VGFPFFLGWILLYLAETVSIIMLGTVCMGLSVG 150 (513)
Q Consensus 75 ~~~~~s~-~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~ 150 (513)
.+.+.+. ...++..+++.+++.++++++|+++||+|||+++.. ..++..+..+.+...++++.++++|+++|++.+
T Consensus 44 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a 123 (1140)
T PRK06814 44 GALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSA 123 (1140)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444433 457889999999999999999999999999997533 333333333444455899999999999999999
Q ss_pred ccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHHHHHHhccCchhhhhh
Q psy8366 151 CCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLISAIFPILTMIMIAFIPESPTWLVS 226 (513)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~ 226 (513)
...|+..+++.+++|+++|++++++.+++.++|.++|+.+++.+ +|++.|+..++..++.+++.+++|+++.. .
T Consensus 124 ~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 201 (1140)
T PRK06814 124 LFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA--A 201 (1140)
T ss_pred hhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC--C
Confidence 99999999999999999999999999999999999998888765 89999966555556555566667765421 0
Q ss_pred cCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHH
Q psy8366 227 KGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFF 306 (513)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (513)
++...+ ... ..+ .... ++.+++++..+...+...+..
T Consensus 202 ~~~~~~-~~~-------------~~~----------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~ 238 (1140)
T PRK06814 202 PDLKID-RNI-------------IRS----------------------------TITL-LKYAKADKRIWLAILGISWFW 238 (1140)
T ss_pred CCCeec-cch-------------HHH----------------------------HHHH-HHHHhcCchHHHHHHHHHHHH
Confidence 000000 000 000 0011 444445544444333333222
Q ss_pred HHHhhchhchhhhHHHHHHh-cCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHH--
Q psy8366 307 ITIIASLQPMRPFLVEIFRT-FGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICA-- 382 (513)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-- 382 (513)
+. ...+..+.|.++++ +|.+... +++.+..+++.+++.++.|++.++..+++.+..+.++.+++.+.+.+..
T Consensus 239 ~~----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (1140)
T PRK06814 239 LV----GAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSS 314 (1140)
T ss_pred HH----HHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccc
Confidence 22 22344567777754 6777766 7888999999999999999999988777766555555554444333210
Q ss_pred -------------HhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8366 383 -------------MNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINL 449 (513)
Q Consensus 383 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 449 (513)
.....+.+...+..++++.+. ....+...+++.+..|++.+|+++|+.+++..++..+++.+.+.+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l 393 (1140)
T PRK06814 315 VPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAG-GLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALL 393 (1140)
T ss_pred cccccccccchhhhhcccccHHHHHHHHHHHHHH-HHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 000123333333333333333 334455668999999999999999999999999999999999988
Q ss_pred hh-ccchhHHHHHHHHHHHHH
Q psy8366 450 TS-WFGLHGTLFIYTLVSFLG 469 (513)
Q Consensus 450 ~~-~~g~~~~~~~~~~~~~~~ 469 (513)
.+ ..++...+++.+++.++.
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~ 414 (1140)
T PRK06814 394 QALGFSIPWIILFIALANLIV 414 (1140)
T ss_pred HHhccCHHHHHHHHHHHHHHH
Confidence 74 345555555444443333
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=217.73 Aligned_cols=422 Identities=14% Similarity=0.121 Sum_probs=255.5
Q ss_pred HHHHHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcch
Q psy8366 32 SQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGR 111 (513)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Gr 111 (513)
++|....+..+.....+.... .+...|.+. +++|+|..+.+++.++. .....++++.|++.||+||
T Consensus 25 ~Rw~~lva~~~~~~~~g~~y~-fsv~s~~L~------------~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~ 90 (591)
T PTZ00207 25 RRFALLVLGAFCSICTSFMYA-FNLISGAMQ------------ARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGP 90 (591)
T ss_pred chHHHHHHHHHHHHHHHHHHH-HHHHHHHHH------------HHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCc
Confidence 334444444444444444333 335667788 89999999999998874 4456788889999999999
Q ss_pred hhHHHHHhHHHHHHHHHHHhc------hhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHH
Q psy8366 112 KRLMILVGFPFFLGWILLYLA------ETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVF 185 (513)
Q Consensus 112 r~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ 185 (513)
|++++++.+++++++++++++ ++++.+++.|++.|+|.+...+.....+.+|+| ++||++.++...+.++|..
T Consensus 91 R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsa 169 (591)
T PTZ00207 91 RPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSA 169 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 689999999999999999999999999999996 7899999999999999997
Q ss_pred H-HHHHhhhH--hHHHHHHhhhHHHHHHHHH-HHhc--cCchhhhhhcCChHHHHHHHHHhhCC------C---------
Q psy8366 186 I-IFLIYALT--DWRTTVLISAIFPILTMIM-IAFI--PESPTWLVSKGRLEEAERSLRWVRGW------S--------- 244 (513)
Q Consensus 186 ~-~~~l~~~~--~wr~~f~~~~~~~~~~~~~-~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~------~--------- 244 (513)
+ +++....+ +|++.|++.+++.++..++ ..++ |+.|++..++++.++.++..++..+. .
T Consensus 170 I~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~ 249 (591)
T PTZ00207 170 ILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGF 249 (591)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHH
Confidence 6 44444444 8999999988888777664 4444 44444433333333333322211110 0
Q ss_pred ---------------------chhhHHHHHHHHHH--------------hhc----c-cccccccc--c------cchh-
Q psy8366 245 ---------------------KKHKVRVEFEQLVK--------------DTN----S-ATLYVADS--E------YTTD- 275 (513)
Q Consensus 245 ---------------------~~~~~~~~~~~~~~--------------~~~----~-~~~~~~~~--~------~~~~- 275 (513)
..+........... ..+ . ........ + ..+.
T Consensus 250 ~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (591)
T PTZ00207 250 VILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDK 329 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccc
Confidence 00000000000000 000 0 00000000 0 0000
Q ss_pred ------h-cchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhc-CCCchh--HH-HHHHHHHHH
Q psy8366 276 ------Q-RKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTF-GLPMKS--EW-VLVLTGILS 344 (513)
Q Consensus 276 ------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~-~~~~~~~~~ 344 (513)
+ ..+....++++.+.+.+ ++..+...++...........+.++.+.. |.+.+. .. +.++.++++
T Consensus 330 ~~~~~~~~~~P~~~~t~~q~l~~~d-----~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~ 404 (591)
T PTZ00207 330 VVETDVDYIAPQFQETFIEGLKTAR-----LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGS 404 (591)
T ss_pred cccccccCCCCCCcchHHHHHhchh-----HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHH
Confidence 0 00000013233333322 33333333444444445556677777776 663333 32 678899999
Q ss_pred HHhhhHHHHhhcccCCch---------HHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhh
Q psy8366 345 ITGSFVSTITVNKLGKRG---------MTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLL 415 (513)
Q Consensus 345 ~~~~~~~g~l~d~~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (513)
.+|++..|.+.....+|+ .+.+..+ +.++.+++.... +.-...+...+.+.+. ....++....+
T Consensus 405 ~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~-----p~~~L~~~~~lvg~~~-G~~~~~~~~i~ 477 (591)
T PTZ00207 405 AVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTL-----PKAALPLPYFIAAFAN-GFMAATIALVT 477 (591)
T ss_pred HhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHC-----CccHhHHHHHHHHHHh-hHhHHHHHHHH
Confidence 999999998873222221 2222223 444444444332 2122333344444444 34456667899
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHH-HHHhhhhhhcc----------c---hhHHHHHHHHHHHHHHhheeEEcccCC
Q psy8366 416 SEVFPLQVRGIASGITAASSSVVNFIS-TKTYINLTSWF----------G---LHGTLFIYTLVSFLGFIYIYFYVPETE 481 (513)
Q Consensus 416 ~~~~p~~~~~~~~g~~~~~~~~g~~~~-~~~~g~l~~~~----------g---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (513)
+|+|. ++-|+-+-+.....-+|..+- -.++|.++|.- | ++.+|++.+++++++.+....+..+++
T Consensus 478 selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 478 RTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred HHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 99999 888887777777777777666 45778787743 2 567899999999998887655544444
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-26 Score=215.12 Aligned_cols=323 Identities=11% Similarity=0.063 Sum_probs=220.4
Q ss_pred cccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhc-----chhhH-HHHHhHHHH
Q psy8366 50 AFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYI-----GRKRL-MILVGFPFF 123 (513)
Q Consensus 50 ~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~~ 123 (513)
.....++.+|.+. +|+|+|.++.|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.+
T Consensus 3 ~~~~~~~~~~~~~------------~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~ 68 (356)
T TIGR00901 3 PLGLVGNTLPYWL------------RSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLL 68 (356)
T ss_pred CchhHHhHHHHHH------------HHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHH
Confidence 3455667888888 8999999999999765 455555 99999999998 89997 567778888
Q ss_pred HHHHHHHhc---hhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----h-
Q psy8366 124 LGWILLYLA---ETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----D- 195 (513)
Q Consensus 124 ~~~~~~~~~---~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~- 195 (513)
+...+.++. .+.+.+....++.+++.+...++..+++.|++|+++|+++.++...+..+|.++++.++..+ +
T Consensus 69 ~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~ 148 (356)
T TIGR00901 69 SLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFA 148 (356)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 887777777 46667778888889998989999999999999999999999999999999999888887543 6
Q ss_pred -------HHHHHHhhhHHHHHHHHHHHh-ccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccc
Q psy8366 196 -------WRTTVLISAIFPILTMIMIAF-IPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYV 267 (513)
Q Consensus 196 -------wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (513)
||..|++.+++.++..+..++ .||+++. +.+.++..+ +.
T Consensus 149 ~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~~------------~~------------------ 195 (356)
T TIGR00901 149 NTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED---ASVPKPLTQ------------AV------------------ 195 (356)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc---cccchhHHH------------HH------------------
Confidence 999999999887776665443 5664220 000000000 00
Q ss_pred cccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHH-HHHH
Q psy8366 268 ADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTG-ILSI 345 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~-~~~~ 345 (513)
... ++.+++++..+............ .........+.+.++++.|++... +......+ +..+
T Consensus 196 --------------~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~ 259 (356)
T TIGR00901 196 --------------LKP-IREFFQRKNMIQALLLLLLIVLY-KLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAI 259 (356)
T ss_pred --------------HHH-HHHHHHhcCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHH
Confidence 011 33333333322222222222222 222344556777777778888776 66665544 5778
Q ss_pred HhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcC------CCchhhHHHHHHHHHHHhccccchhhhhhcccc
Q psy8366 346 TGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQ------WPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVF 419 (513)
Q Consensus 346 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (513)
++.++++++.||+|+|+.+..+..+.+++..++.+...... ...+.......+...+ .....+...++..|.+
T Consensus 260 ~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 338 (356)
T TIGR00901 260 LGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVT-GGLGTVAFVAFLSKLS 338 (356)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHH-hHHHHHHHHHHHHHhc
Confidence 99999999999999999888887777766555544321100 1122222222222222 2344566778999999
Q ss_pred chhhhhHHHHHHHHHHH
Q psy8366 420 PLQVRGIASGITAASSS 436 (513)
Q Consensus 420 p~~~~~~~~g~~~~~~~ 436 (513)
|+++||+.+|+.++..+
T Consensus 339 p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 339 NPKFGATQMALLSSLSA 355 (356)
T ss_pred CCCccHHHHHHHHHHHh
Confidence 99999999999887654
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=201.65 Aligned_cols=358 Identities=16% Similarity=0.184 Sum_probs=270.9
Q ss_pred HHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHH
Q psy8366 37 SVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMI 116 (513)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~ 116 (513)
....+...+..|+......+++|.+. +.|+++..|.+++...++.|+.+.+++.|++.+|+|+|+.++
T Consensus 15 ~v~~t~lFfl~G~~~~l~diLip~l~------------~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~ 82 (422)
T COG0738 15 FVLLTSLFFLWGFITCLNDILIPHLK------------EVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIV 82 (422)
T ss_pred HHHHHHHHHHHHHHhhcchhhHHHHH------------HHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHH
Confidence 33445566677888888889999999 899999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHH---hchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh
Q psy8366 117 LVGFPFFLGWILLY---LAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL 193 (513)
Q Consensus 117 ~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~ 193 (513)
+|+.++++|+.+.. ...+|..++++-++.|.|.+...+++..+++...++++..+.+++.+...++|..++|+++..
T Consensus 83 lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~ 162 (422)
T COG0738 83 LGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSS 162 (422)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999994 667899999999999999999999999999999999888999999999999999999988665
Q ss_pred H-----------------------hHHHHHHhhhHHHHHHHHHHHhc--cCchhhhhhcCChHHHHHHHHHhhCCCchhh
Q psy8366 194 T-----------------------DWRTTVLISAIFPILTMIMIAFI--PESPTWLVSKGRLEEAERSLRWVRGWSKKHK 248 (513)
Q Consensus 194 ~-----------------------~wr~~f~~~~~~~~~~~~~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (513)
+ .|+++|...+...++..+..... |+.++ ...++
T Consensus 163 lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~-----~~~~~---------------- 221 (422)
T COG0738 163 LILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV-----AAPSL---------------- 221 (422)
T ss_pred HHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc-----ccccc----------------
Confidence 3 47888888877776666654443 33221 00000
Q ss_pred HHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh-c
Q psy8366 249 VRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT-F 327 (513)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 327 (513)
.++++ .. ...+++++..+...+..+++..... ....|++.++.+ .
T Consensus 222 -------------------------~~~~~----~~-~~~l~~~~~~~~gvl~~FlYVG~Ev----a~gsfl~~y~~~~~ 267 (422)
T COG0738 222 -------------------------GASGS----AG-LSSLFQNKHLRLGVLAIFLYVGAEV----AIGSFLVSYLEELL 267 (422)
T ss_pred -------------------------ccccc----ch-HHHHHhChHHHHHHHHHHHHHhHHH----HHHHHHHHHHHhcC
Confidence 00000 01 4455556555555555555555544 345677777766 7
Q ss_pred CCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhcc
Q psy8366 328 GLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYG 406 (513)
Q Consensus 328 g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (513)
|++..+ ....+....+.++|++++.++..|+...|.+.+...+..+.++...+.. ..+.+.....++.+. ..
T Consensus 268 g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~------g~v~~~~l~~ig~F~-si 340 (422)
T COG0738 268 GLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIG------GVVALYALFLIGLFN-SI 340 (422)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc------ChHHHHHHHHHHHHh-HH
Confidence 777776 6888889999999999999999999999988877666655555555543 344444444444444 45
Q ss_pred ccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHH
Q psy8366 407 MLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGF 470 (513)
Q Consensus 407 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 470 (513)
.+|..++...+..| ++. ...|....+..+|+++.|++.|++.|..|....+.....+|.+..
T Consensus 341 mfPTIfslal~~l~-~~t-s~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 341 MFPTIFSLALKNLG-EHT-SVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHHHHHHHHHhccC-ccc-cccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 57888899999888 443 344444456678999999999999999997777665555665554
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=217.42 Aligned_cols=341 Identities=16% Similarity=0.138 Sum_probs=246.4
Q ss_pred CcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhc-----hhHHHHHHHHHHhhcccc
Q psy8366 76 DLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLA-----ETVSIIMLGTVCMGLSVG 150 (513)
Q Consensus 76 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~g~~ 150 (513)
+..-|+..++++.++..+...+.++++|.++||+.|||+++.+.++.++..++.++. .+.+.+++.-++.|++.+
T Consensus 39 ~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a 118 (524)
T PF05977_consen 39 QLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSA 118 (524)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHH
Confidence 444588999999999999999999999999999999999999998877665554432 378899999999999999
Q ss_pred ccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh----HhHHHHHHhhhHHHHHHHHHHHhccCchhhhhh
Q psy8366 151 CCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL----TDWRTTVLISAIFPILTMIMIAFIPESPTWLVS 226 (513)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~ 226 (513)
...|+..+++.|..|+++...++++.+...++..++||.+++. +|-.+.|.+.++..++........+..++
T Consensus 119 ~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~---- 194 (524)
T PF05977_consen 119 FFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP---- 194 (524)
T ss_pred HHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----
Confidence 9999999999999999999999999988888776666666554 48888999888777665554444433211
Q ss_pred cCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHH
Q psy8366 227 KGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFF 306 (513)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (513)
+++ .+.++..+.+ +.-++..++++..+..+....+..
T Consensus 195 ~~~-~~~e~~~~~l------------------------------------------~~G~ryv~~~~~l~~~l~~~~~~~ 231 (524)
T PF05977_consen 195 PSS-LPRERFFSAL------------------------------------------REGLRYVRSSPPLRSVLLRSFLFN 231 (524)
T ss_pred ccc-cchhhhhhhH------------------------------------------HHHHHHHhcchHHHHHHHHHHHHH
Confidence 000 0000000000 000333444443333332222222
Q ss_pred HHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHh
Q psy8366 307 ITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMN 384 (513)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (513)
+. ...+...+|.+.+ ..|.+... |++.+..+++.++|+++.+++.+|+++++.+..+.++.+++.+.+.+..
T Consensus 232 l~----~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~-- 305 (524)
T PF05977_consen 232 LF----ASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP-- 305 (524)
T ss_pred Hh----hhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch--
Confidence 21 1122344666664 46766666 8999999999999999999999999999888888888777777666644
Q ss_pred cCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHH
Q psy8366 385 LQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTL 464 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 464 (513)
+.+...+.+++.+.+. ........+..++..|++.||+++++++++...+..+|..+.|.+.+..|....+.+.++
T Consensus 306 ---~~~~~~~~l~l~G~~~-~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~ 381 (524)
T PF05977_consen 306 ---SFWLALIALFLAGAAW-IIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGA 381 (524)
T ss_pred ---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 4444444444444433 333455567889999999999999999999999999999999999999998888877766
Q ss_pred HHHHHHhhe
Q psy8366 465 VSFLGFIYI 473 (513)
Q Consensus 465 ~~~~~~~~~ 473 (513)
..+++.++.
T Consensus 382 ~lll~~~~~ 390 (524)
T PF05977_consen 382 ALLLSALIA 390 (524)
T ss_pred HHHHHHHHH
Confidence 655555543
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=207.98 Aligned_cols=358 Identities=15% Similarity=0.182 Sum_probs=229.4
Q ss_pred ccccchhhhhhcccccccccccCCCCcccchhh-HHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHH
Q psy8366 51 FGMPTVVVGVLDHKVASNQTILESPDLILSDEQ-SSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILL 129 (513)
Q Consensus 51 ~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~-~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 129 (513)
....+.+.|.+. +|+|+|++| .|.+.++++.++++++++.|+++||+|.|+++.++.+.+++.+++.
T Consensus 42 R~n~s~a~p~L~------------~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~ 109 (511)
T TIGR00806 42 RPGESFITPYLL------------TVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLL 109 (511)
T ss_pred hchHHHHHHHHH------------HHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 344556788888 899999999 9999999999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH---hHHHHHHh---h
Q psy8366 130 YLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT---DWRTTVLI---S 203 (513)
Q Consensus 130 ~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~wr~~f~~---~ 203 (513)
++++++..+.+.|++.|++.|... +...++..|+|+++|+++.++..++..+|.+++++++..+ |||+.+.+ .
T Consensus 110 ~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Is 188 (511)
T TIGR00806 110 LLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIIS 188 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999988887655 88876543 3
Q ss_pred hHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhh
Q psy8366 204 AIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLS 283 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (513)
.....+++++.+++|..++-+.-+++.+.......+.....+++. .......+........
T Consensus 189 l~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 249 (511)
T TIGR00806 189 LVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPG-------------------GKLEDYLGTCRDSFLV 249 (511)
T ss_pred HHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCc-------------------cccchhhhhhhhHHHH
Confidence 334445555677888655433322211100000000000000000 0000000000000011
Q ss_pred hhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCch--hHHHHHHHHHHHHHhhhHHHHhhcccCCc
Q psy8366 284 KLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMK--SEWVLVLTGILSITGSFVSTITVNKLGKR 361 (513)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 361 (513)
.++..+. ..+..+.++...++.....++++-+..|.+.+.++..-+.+ .|..-.+..+.+.+.++..|++-.++.+.
T Consensus 250 ~l~~~~~-~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~ 328 (511)
T TIGR00806 250 RMLSELV-TIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW 328 (511)
T ss_pred HHHHHHH-HHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh
Confidence 1122211 11112223334444455555666677888887776543322 26677777888888999999986666443
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHH
Q psy8366 362 GMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFI 441 (513)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 441 (513)
..+.++..-..-+.+++.... .++.|...+...++...+.+ ..++...-++.....+.-|..+|+++++..+-..+
T Consensus 329 ~~l~l~v~s~~~~gll~~m~~---t~~Iw~~Y~~yvlf~~~y~f-litia~~~iA~~L~~~~~aLvFGiNtfvAl~LQti 404 (511)
T TIGR00806 329 SKLLIAVVSAIQAGLVFWMSQ---SHDIWVLYVTYVLFRGIYQF-LVPIATFQIASSLSKELCALVFGINTFVATALKTI 404 (511)
T ss_pred HHHHHHHHHHHHHHHhhhhhc---ccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHh
Confidence 233333222222222222211 22556555555555555533 33444455555556566789999998887766655
Q ss_pred HHHH
Q psy8366 442 STKT 445 (513)
Q Consensus 442 ~~~~ 445 (513)
-..+
T Consensus 405 lT~i 408 (511)
T TIGR00806 405 ITAV 408 (511)
T ss_pred eEEE
Confidence 5544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=245.06 Aligned_cols=335 Identities=11% Similarity=0.056 Sum_probs=225.4
Q ss_pred hhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHH---HhchhHHHHHHHHHHhhccccccccchh
Q psy8366 81 DEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILL---YLAETVSIIMLGTVCMGLSVGCCEAPII 157 (513)
Q Consensus 81 ~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~g~~~~~~~~~ 157 (513)
....+++.+++.+++.++++++|+++||+|||++++++.++..++.++. ..+++++.++++|+++|++.+...++..
T Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 125 (1146)
T PRK08633 46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKY 125 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHH
Confidence 4457999999999999999999999999999999999887766555544 3457899999999999999999999999
Q ss_pred hhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH-------------hHHHHHHhhhHHHH-HHHHHHHhccCchhh
Q psy8366 158 SYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT-------------DWRTTVLISAIFPI-LTMIMIAFIPESPTW 223 (513)
Q Consensus 158 ~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-------------~wr~~f~~~~~~~~-~~~~~~~~~~e~p~~ 223 (513)
+++.|++|+++|++++++..++..+|.++|++++..+ +|++.+.+..+... +.+++.+.+||+|+.
T Consensus 126 ~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1146)
T PRK08633 126 GIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAA 205 (1146)
T ss_pred hhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCC
Confidence 9999999999999999999999999988888876654 23444444333333 333345567877642
Q ss_pred hhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHH
Q psy8366 224 LVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMI 303 (513)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (513)
...+.+.++ . ... . ..... ++.+++++..+..++...
T Consensus 206 ~~~~~~~~~-~------------~~~-~----------------------------~~~~~-~~~l~~~~~~~~~~~~~~ 242 (1146)
T PRK08633 206 APEVFDKKK-Y------------LFP-K----------------------------LLWRN-LKLLRSDRVLWLAIIGLS 242 (1146)
T ss_pred Ccccccccc-c------------ccH-H----------------------------HHHHH-HHHHhcCcHHHHHHHHHH
Confidence 111000000 0 000 0 00011 334444443333333222
Q ss_pred HHHHHHhhchhchhhhHHHHHH-hcCCCch-h-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHH
Q psy8366 304 LFFITIIASLQPMRPFLVEIFR-TFGLPMK-S-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSI 380 (513)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 380 (513)
+.... ......++|.++. ..|++.. . +++....+++.+++.++.+++.||+++++.+.++.++.+++.+++..
T Consensus 243 ~~~~~----~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 318 (1146)
T PRK08633 243 YFWFI----SQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPT 318 (1146)
T ss_pred HHHHH----HHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHH
Confidence 22221 2233455666654 5788877 5 78888889999999999999999999988887777777666665554
Q ss_pred HHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhc-cchhHHH
Q psy8366 381 CAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSW-FGLHGTL 459 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~ 459 (513)
.. +.+..++..++.+.+. ....+...+++.+..|++.||+++|+.+++.++|.++++.+.+.+... .++...+
T Consensus 319 ~~-----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~ 392 (1146)
T PRK08633 319 AP-----SLASVLVLFFLFGFSA-GLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLF 392 (1146)
T ss_pred hh-----hHHHHHHHHHHHHHHH-HHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 32 3333333333333333 233445568888999999999999999999999998887776655431 2333344
Q ss_pred HHHHHHHHH
Q psy8366 460 FIYTLVSFL 468 (513)
Q Consensus 460 ~~~~~~~~~ 468 (513)
++.+.+.++
T Consensus 393 ~~~~~~~~~ 401 (1146)
T PRK08633 393 YLIALVTLI 401 (1146)
T ss_pred HHHHHHHHH
Confidence 444444433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=219.35 Aligned_cols=324 Identities=15% Similarity=0.191 Sum_probs=219.0
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhh----cchhhH-HHHHhHHHHHHHHHHHhchh------HHHHHHHHH
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEY----IGRKRL-MILVGFPFFLGWILLYLAET------VSIIMLGTV 143 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr----~Grr~~-~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~ 143 (513)
+++|+++.++|++.++..+..++..|+.|+++|| +||||. ++++..+.+++.+++.+.++ ...+++.++
T Consensus 28 ~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (437)
T TIGR00792 28 DVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYI 107 (437)
T ss_pred HccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 7899999999999999999999999999999997 788654 77788888888888877654 456777889
Q ss_pred HhhccccccccchhhhhhccC-CccccchhhhHhhHHHHHHHHHHHHHh----h-------hHhHHHHHHhhhHHHHHHH
Q psy8366 144 CMGLSVGCCEAPIISYIGEIS-EPRMRGSLSLFAGAACNFGVFIIFLIY----A-------LTDWRTTVLISAIFPILTM 211 (513)
Q Consensus 144 l~G~g~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~lG~~~~~~l~----~-------~~~wr~~f~~~~~~~~~~~ 211 (513)
+.+++.+...+...++..|.. ++++|++..++.+.+..+|.++++.+. . ..+||+.+++.+++.++..
T Consensus 108 ~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~ 187 (437)
T TIGR00792 108 LLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSL 187 (437)
T ss_pred HHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHH
Confidence 999998888888888899987 478999999998888877766544331 1 2379999999998887776
Q ss_pred HH-HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhc
Q psy8366 212 IM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLV 290 (513)
Q Consensus 212 ~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (513)
+. .+++||+++. .+.++ ++ + .+..+.++.++
T Consensus 188 ~~~~~~~~e~~~~----~~~~~-----------------------------------------~~--~-~~~~~~~~~l~ 219 (437)
T TIGR00792 188 IICFFGTKERYSE----IPKNI-----------------------------------------EK--K-LSLKQIFKALF 219 (437)
T ss_pred HHHHcCCEecCCC----CCccc-----------------------------------------cc--C-CCHHHHHHHHh
Confidence 64 4556775420 00000 00 0 00111144444
Q ss_pred cCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh-cCCCchhHHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhH
Q psy8366 291 RPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT-FGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTG 369 (513)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 369 (513)
+++..+.......+..... .....+.+++.+. .+.+...+....+..++.+++.++.++++||+|+|+.+..+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~ 295 (437)
T TIGR00792 220 KNDQLLILCLAYLFYNLAF----NIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGIL 295 (437)
T ss_pred CCHHHHHHHHHHHHHHHHH----HHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 4443333333222222221 1222233333332 3322222566667789999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccc-------hhhhhHHHHHHHHHHHHHHHHH
Q psy8366 370 INTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFP-------LQVRGIASGITAASSSVVNFIS 442 (513)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~ 442 (513)
+..++.+.+.+.. .+.+...+...+.+.+. ....+..+++.+|..+ ++.+|.+.|+.++...+|..++
T Consensus 296 ~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg 370 (437)
T TIGR00792 296 LMVLGYLIFFFAG----SNLPLILVLIILAGFGQ-NFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALA 370 (437)
T ss_pred HHHHHHHHHHHcc----hhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHH
Confidence 7777665554422 12222222223322222 2334666677777754 4568999999999999999999
Q ss_pred HHHhhhhhhccch
Q psy8366 443 TKTYINLTSWFGL 455 (513)
Q Consensus 443 ~~~~g~l~~~~g~ 455 (513)
+.+.|.+.+..|+
T Consensus 371 ~~i~g~ll~~~G~ 383 (437)
T TIGR00792 371 GFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999987765
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-27 Score=207.35 Aligned_cols=341 Identities=15% Similarity=0.104 Sum_probs=242.7
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhcccccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEA 154 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~ 154 (513)
.+.+-+++++|++.+.+.+...+.+++.|.+.||+|+|..+++|++....+++++++.++++.++++|.+||+|.++..+
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence 56677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhccCCcc-ccchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCC
Q psy8366 155 PIISYIGEISEPR-MRGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGR 229 (513)
Q Consensus 155 ~~~~~~~~~~~~~-~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~ 229 (513)
+..++++|.+|++ +|++++|+...+.++|.++||..++.+ |.+.+|++.+++.++...+.+++-|.-+ .+
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~-----~~ 253 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE-----MD 253 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc-----cC
Confidence 9999999999854 589999999999999998888887765 9999999999999999887776544311 00
Q ss_pred hHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHH
Q psy8366 230 LEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITI 309 (513)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (513)
.++ .++ ..++++.+.++...- ........
T Consensus 254 ~~~----------------------------------------~~~------~~~~~~Ll~dP~I~~-----~agai~~~ 282 (464)
T KOG3764|consen 254 PDS----------------------------------------TEQ------GTPMWSLLMDPYILL-----IAGAITFS 282 (464)
T ss_pred ccc----------------------------------------ccc------CccHHHHHhCchHhh-----hhcchhhc
Confidence 000 000 111133333332111 11111111
Q ss_pred hhchhchhhhHHHHH-HhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHH--HhhHHHHHHHHHHHHHHHhc
Q psy8366 310 IASLQPMRPFLVEIF-RTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTL--WSTGINTFFTLMLSICAMNL 385 (513)
Q Consensus 310 ~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~ 385 (513)
..+....-..++.+. ++...+... ++.+....+...++..+.|.+.||+++.+.+. .+.+..+++.....++. .
T Consensus 283 n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~--~ 360 (464)
T KOG3764|consen 283 NSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFAT--S 360 (464)
T ss_pred cchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhh--h
Confidence 112333444455544 445533334 78888889999999999999999999544443 33344443333333332 1
Q ss_pred CCCchhhHHHHHHHHHHHhccccchhhhhhccccchh---hhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHH
Q psy8366 386 QWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQ---VRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIY 462 (513)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 462 (513)
....|.......+.+........|.. .+..|.-..+ ..|.++++......+|.++||.++|.+.+..|+.+...+.
T Consensus 361 ~~~L~vp~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~ii 439 (464)
T KOG3764|consen 361 IAQLWVPNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTII 439 (464)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHH
Confidence 11123333333333333333444544 3333332333 6789999999999999999999999999999999998888
Q ss_pred HHHHHHHHhhee
Q psy8366 463 TLVSFLGFIYIY 474 (513)
Q Consensus 463 ~~~~~~~~~~~~ 474 (513)
+...++-..++.
T Consensus 440 g~~n~iyapvl~ 451 (464)
T KOG3764|consen 440 GILNLIYAPVLL 451 (464)
T ss_pred HHHHHHHHHHHH
Confidence 888887665443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-25 Score=215.19 Aligned_cols=381 Identities=12% Similarity=0.066 Sum_probs=225.1
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhh-cchhhHHHHHhHHHHHHHHHHHhchhHHH-HHHHHHHhhcccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEY-IGRKRLMILVGFPFFLGWILLYLAETVSI-IMLGTVCMGLSVGCC 152 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~g~~~~ 152 (513)
+++|++.++.+++.+.+.....+..+++|+++|| +||||+++++.+++++++++++++++... ++++|+++|+|.|..
T Consensus 43 ~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~ 122 (489)
T PRK10207 43 KQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLF 122 (489)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccc
Confidence 7899999999999999999999999999999999 99999999999999999999999887554 558999999999999
Q ss_pred ccchhhhhhccCCcc--ccchhhhHhhHHHHHHHHHHHHHhhh----HhHHHHHHhhhHHHHHHHHHHHhccCchhhhh-
Q psy8366 153 EAPIISYIGEISEPR--MRGSLSLFAGAACNFGVFIIFLIYAL----TDWRTTVLISAIFPILTMIMIAFIPESPTWLV- 225 (513)
Q Consensus 153 ~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~lG~~~~~~l~~~----~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~- 225 (513)
.+...+++.|.+|++ +|+++.+++..+.++|..+++.++.. +|||+.|++.++..++..+...+.++..+...
T Consensus 123 ~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~ 202 (489)
T PRK10207 123 KANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGS 202 (489)
T ss_pred cCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCC
Confidence 999999999999877 45778899999999888877766554 49999999876544433333333332211000
Q ss_pred -hcCChHHHHHHH-------------HHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhcc
Q psy8366 226 -SKGRLEEAERSL-------------RWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVR 291 (513)
Q Consensus 226 -~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (513)
.+++..+..... ...... . ...... .......... . ...+ +.+ .+...|
T Consensus 203 ~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~-~--~~~~~~-~~~~~~i~~~--~---f~~~-~~~-------~~~~~r 265 (489)
T PRK10207 203 EPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHN-V--EVANLV-LIVLSIVVTI--I---FFRE-AFK-------LDKTGR 265 (489)
T ss_pred CCCccchhhhhHHHHHHHHHHHHHHHHHHHhh-h--hHHHHH-HHHHHHHHHH--H---HHHH-Hhc-------CCHHHH
Confidence 001000000000 000000 0 000000 0000000000 0 0000 000 000111
Q ss_pred CCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh-c-----CCCchhHHHHHHHHHHHHHhhhHHHHhhcccCCchH--
Q psy8366 292 PEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT-F-----GLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGM-- 363 (513)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-- 363 (513)
++.... .............+.......+.+.++ . |+.........+..+..++.+++.+++.||+++|+.
T Consensus 266 ~r~~~~--~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~ 343 (489)
T PRK10207 266 NKMFVA--FVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDL 343 (489)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 111111 111111111111122222333333332 1 222223445555666677788888999999998863
Q ss_pred -----HHHhhHHHHHHHHHHHHHHH--h-c-CCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHH
Q psy8366 364 -----TLWSTGINTFFTLMLSICAM--N-L-QWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAAS 434 (513)
Q Consensus 364 -----~~~~~~~~~~~~~~~~~~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 434 (513)
+.+++.+.+++++.+..... . . ...+...++...++.........+.....+.+..|++.+|.++|+.+..
T Consensus 344 ~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~ 423 (489)
T PRK10207 344 SMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLT 423 (489)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 66777777776654432111 1 1 1122222333333444444556777778888999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhh----------ccchhHHHHHHHHHHHHHHhhee
Q psy8366 435 SSVVNFISTKTYINLTS----------WFGLHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 435 ~~~g~~~~~~~~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~ 474 (513)
.++|+.++..+...... ...+...|...++..++..++.+
T Consensus 424 ~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~ 473 (489)
T PRK10207 424 QAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMA 473 (489)
T ss_pred HHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887754421 11234556666655555544443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=226.50 Aligned_cols=294 Identities=14% Similarity=0.155 Sum_probs=204.0
Q ss_pred HHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHH
Q psy8366 42 FLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFP 121 (513)
Q Consensus 42 ~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 121 (513)
+..+...+..++.++++|.+. ++|+++..+.|++.+.+.++++++.++.|+++||+|||+.+.++.++
T Consensus 40 ~~~~~~~~~~g~~~~~l~~ie------------k~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll 107 (633)
T TIGR00805 40 CAQLQGLLYNGLVNSSLTTIE------------RRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAI 107 (633)
T ss_pred HHHHHHHHHHHHHHhhchhhh------------hhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHH
Confidence 344444566688888999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhch---------------------------------------------------hHHHHHHHHHHhhcccc
Q psy8366 122 FFLGWILLYLAE---------------------------------------------------TVSIIMLGTVCMGLSVG 150 (513)
Q Consensus 122 ~~~~~~~~~~~~---------------------------------------------------~~~~l~~~r~l~G~g~~ 150 (513)
++++++++++++ .+..++++|+++|+|.+
T Consensus 108 ~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~ 187 (633)
T TIGR00805 108 MGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT 187 (633)
T ss_pred HHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC
Confidence 999999998763 25567899999999999
Q ss_pred ccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH--------------------------hHHHHHHhhh
Q psy8366 151 CCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT--------------------------DWRTTVLISA 204 (513)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~--------------------------~wr~~f~~~~ 204 (513)
..++...+++.|++|+++|+++.+++..+..+|+.+|++++..+ +||..|++.+
T Consensus 188 ~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g 267 (633)
T TIGR00805 188 PIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICG 267 (633)
T ss_pred cchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888776532 2788899988
Q ss_pred HHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhh
Q psy8366 205 IFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSK 284 (513)
Q Consensus 205 ~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (513)
++.++..+.++++|++.+....+.+.+..++ +.... .++. ..........+....
T Consensus 268 ~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~--~~~~~-~~~~----------------------~~~~~~~~~~~~~~~ 322 (633)
T TIGR00805 268 GVALLTSIPFFFFPKALPKEGKRVNVDVHET--EKLEK-SEDK----------------------SRKKNSDITKDFPKI 322 (633)
T ss_pred HHHHHHHHHHHhCccccCCcccccchhhhhh--hcccc-cccc----------------------cchhhhhhHHHHHHH
Confidence 8888777666666654211000000000000 00000 0000 000000000000112
Q ss_pred hhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHH-HHHHhhhHHHHhhcccCC-
Q psy8366 285 LLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGI-LSITGSFVSTITVNKLGK- 360 (513)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~-~~~~~~~~~g~l~d~~g~- 360 (513)
.+.+++++..+...+ ..+........+..|+|.+++ .+|+++.. +....+..+ +.+++.+++|+++||++.
T Consensus 323 -~~~Ll~n~~f~~~~l----~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~ 397 (633)
T TIGR00805 323 -IKRLLCNPIYMLVIL----AQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN 397 (633)
T ss_pred -HHHHHcCcHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence 344555543333222 222233335566678998887 58888776 666655554 568899999999999984
Q ss_pred -chHHHHhhHHHHHHHHH
Q psy8366 361 -RGMTLWSTGINTFFTLM 377 (513)
Q Consensus 361 -~~~~~~~~~~~~~~~~~ 377 (513)
|+.+.++..+..++.++
T Consensus 398 ~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 398 VKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 45666666666555443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-25 Score=195.07 Aligned_cols=337 Identities=18% Similarity=0.167 Sum_probs=211.8
Q ss_pred CcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccc
Q psy8366 76 DLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAP 155 (513)
Q Consensus 76 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~ 155 (513)
+.+.+..-.|++.|.|.++..+.++.+|.++||+|||.+++++++..++...+.+.+.|+..+.+.|++.|+..| ...+
T Consensus 62 ~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v 140 (451)
T KOG2615|consen 62 PDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSV 140 (451)
T ss_pred cccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHH
Confidence 333456678999999999999999999999999999999999999999999999999999777777999999987 6777
Q ss_pred hhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhHhH------HHHH----HhhhHHHHH-HHHHHHhccCchhhh
Q psy8366 156 IISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTDW------RTTV----LISAIFPIL-TMIMIAFIPESPTWL 224 (513)
Q Consensus 156 ~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~w------r~~f----~~~~~~~~~-~~~~~~~~~e~p~~~ 224 (513)
..++++|.+++|+|++.++.....+++|.++||.+++++.- +.+| ++..+++.. ..+..+++|||-+..
T Consensus 141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~r 220 (451)
T KOG2615|consen 141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLR 220 (451)
T ss_pred HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccch
Confidence 88999999999999999999999999999999999888732 1112 222233333 333567789984321
Q ss_pred hhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchh--HHHHHH
Q psy8366 225 VSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVR--PFIMIM 302 (513)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 302 (513)
.+++...+..+..+. +. +..+.. . ... ...+.+++... ..+-.+
T Consensus 221 k~~~~~~~~~~~~~~----------~~---~~~~~~--------------~------~~~-v~~lrn~p~~~~i~~~~i~ 266 (451)
T KOG2615|consen 221 KRNDEHSTLQEAADD----------RL---ALLKFA--------------R------IFK-VAALRNPPLLDFISVLRIF 266 (451)
T ss_pred hhcccccchhhhhhh----------hh---hhcchh--------------h------hhh-hhhhcCccccchHHHHHHH
Confidence 111000000000000 00 000000 0 000 11122222111 111111
Q ss_pred HHHHHHHhhchhchhhhHHHHH-HhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccC--CchHHHHhhHHHHHHHHHH
Q psy8366 303 ILFFITIIASLQPMRPFLVEIF-RTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLG--KRGMTLWSTGINTFFTLML 378 (513)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~ 378 (513)
.+..+.....+.....+...+. +.+|+++.+ |.+....++.+.+......+..+|.+ .+..+..+..++.-..+.+
T Consensus 267 ~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~lll 346 (451)
T KOG2615|consen 267 GLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLL 346 (451)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHH
Confidence 1111111111122222223222 457888776 88888888888877777777777765 3434444433333333333
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy8366 379 SICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWF 453 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 453 (513)
.... .+. .+.+...+..+.+....+....++....|+++||+++|+..+.+.++.++||.+.|.+..+.
T Consensus 347 s~~~-----~~~-~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 347 SLAR-----TPV-VLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred hccc-----cch-hhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 3221 222 22222222233323334555678888999999999999999999999999999999887764
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-24 Score=187.73 Aligned_cols=361 Identities=14% Similarity=0.124 Sum_probs=266.0
Q ss_pred HHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhH
Q psy8366 35 TASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRL 114 (513)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~ 114 (513)
+......+..+...-.....+|+++++. +|+|+|.+..|+++++..+...+.+++..+++.|+|.++.
T Consensus 12 ~li~gIvlia~NLR~~itsvgPLL~~Ir------------~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~ 79 (395)
T COG2807 12 LLLAGIVLIAFNLRPAITSVGPLLDEIR------------QDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERS 79 (395)
T ss_pred HHHHHHHHHHhccchhhhhhhhhHHHHH------------HHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHH
Confidence 3333344445555666788889999999 9999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHH----
Q psy8366 115 MILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLI---- 190 (513)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l---- 190 (513)
+..++++.++|.++-... +.+.++.+-.+.|.|.+...+..+..+.+.+ +|+-+..++++.+..++|..+++.+
T Consensus 80 l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~F-pk~~~~mtglYs~sl~~~aaLaa~lavpl 157 (395)
T COG2807 80 LFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDF-PKRVGLMTGLYSTSLGAGAALAAALAVPL 157 (395)
T ss_pred HHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhc-ccchhhHHhHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999888 8889999999999999999999999999999 5667999999999988877766554
Q ss_pred hhhH-hHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccc
Q psy8366 191 YALT-DWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVAD 269 (513)
Q Consensus 191 ~~~~-~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (513)
.... +||....+-+.++++.++.++.-. .| ++....
T Consensus 158 a~~~~gW~~aL~~WAl~allAl~~WlPq~--~r----~~~~~~------------------------------------- 194 (395)
T COG2807 158 AQHSGGWRGALGFWALLALLALLIWLPQA--LR----EQAASI------------------------------------- 194 (395)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHhhhc--cc----cccccc-------------------------------------
Confidence 4444 799999999999988887765321 11 000000
Q ss_pred cccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhh
Q psy8366 270 SEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGS 348 (513)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~ 348 (513)
+.+. .+ ...+++++ ..+...+++..+...++....|+|.++.+.|+|... +.+.+...+..++.+
T Consensus 195 ---~~~~------~~-~~~vw~~~----~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ 260 (395)
T COG2807 195 ---ATKL------VS-VRKVWRSP----LAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTA 260 (395)
T ss_pred ---cccc------cc-ccccccCc----hhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHH
Confidence 0000 00 12233333 334444555555556778889999999999999987 899999999999999
Q ss_pred hHHHHhhcccCC-chHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhcccc-chhhhhH
Q psy8366 349 FVSTITVNKLGK-RGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVF-PLQVRGI 426 (513)
Q Consensus 349 ~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~ 426 (513)
+....+.+|... |........++.++.+.+.+.+ .+..+.. ..+++.+. .+.++...+.+.+.. .++..+.
T Consensus 261 ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P---~~~~~lw---~~llG~G~-G~~F~laL~li~~rs~~a~~Aa~ 333 (395)
T COG2807 261 LLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAP---GQLPILW---ALLLGLGQ-GGAFPLALTLILLRSSDAAIAAA 333 (395)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh---hhHHHHH---HHHHhCcc-chHHHHHHHHHHhhcCChHHHHH
Confidence 999999997655 4455555566666666665543 1122222 22333332 344565555555543 4467788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHHHHHhhe
Q psy8366 427 ASGITAASSSVVNFISTKTYINLTSWFG-LHGTLFIYTLVSFLGFIYI 473 (513)
Q Consensus 427 ~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~ 473 (513)
-+|+.+.++++-.+.||.+.|.+.|..| |......+++..++..+.-
T Consensus 334 LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 334 LSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFG 381 (395)
T ss_pred HHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987 5555555555555444433
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-24 Score=207.25 Aligned_cols=382 Identities=13% Similarity=0.073 Sum_probs=236.0
Q ss_pred cccchhhHHHHHHHHhhhhhhhHHHHHHhhhh-cchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccc
Q psy8366 77 LILSDEQSSWLGSILFLFHPFGSIISGYFLEY-IGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAP 155 (513)
Q Consensus 77 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~ 155 (513)
+|++..+.+++.+.+.++..++++++|+++|| +|||++++++.++.+++.++.+++++++.++++|++.|+|.|...+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 122 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN 122 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence 89999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCccc---cchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHHHHHHhcc----Cchhhh
Q psy8366 156 IISYIGEISEPRM---RGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLISAIFPILTMIMIAFIP----ESPTWL 224 (513)
Q Consensus 156 ~~~~~~~~~~~~~---r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~~----e~p~~~ 224 (513)
..++++|++|+++ |+++.++...+.++|..+|+.++..+ +||+.|++.++..++..+..++.+ +.|+.
T Consensus 123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~- 201 (475)
T TIGR00924 123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSV- 201 (475)
T ss_pred HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCC-
Confidence 9999999998754 88899999999999999988887654 899999998866555544433333 22210
Q ss_pred hhcCChHHHHHHHHHhh--------------CCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhc
Q psy8366 225 VSKGRLEEAERSLRWVR--------------GWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLV 290 (513)
Q Consensus 225 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (513)
.+...++.++...... ...+..... ......... ... .......+.+ .+...
T Consensus 202 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~-~~~~~~~~~~-------~~~~~ 267 (475)
T TIGR00924 202 -PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIAN-ILLMTVTLA----VII-FFFRLAFKPR-------LDAVA 267 (475)
T ss_pred -CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHH----HHH-HHHHHHHhcc-------CCHHH
Confidence 0000000000000000 000000000 000000000 000 0000000000 00000
Q ss_pred cCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh-cC-----CCchhHHHHHHHHHHHHHhhhHHHH----hhcc-cC
Q psy8366 291 RPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT-FG-----LPMKSEWVLVLTGILSITGSFVSTI----TVNK-LG 359 (513)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g-----~~~~~~~~~~~~~~~~~~~~~~~g~----l~d~-~g 359 (513)
+++. .. ++...+........+.-....++.+.++ .+ +....+++..+.++..++..++..+ +.+| .+
T Consensus 268 ~~~~-~~-~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~ 345 (475)
T TIGR00924 268 RNKM-YA-YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKD 345 (475)
T ss_pred HhHH-HH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 1111 11 1111121112122222222333433322 22 2212356777777777777666554 3443 22
Q ss_pred CchHH--HHhhHHHHHHHHHHHHHHHhcC---CCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHH
Q psy8366 360 KRGMT--LWSTGINTFFTLMLSICAMNLQ---WPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAAS 434 (513)
Q Consensus 360 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 434 (513)
.+... .++.++.+++++.+.+.....+ ..++..++...++.........|...+++.+..|++.||+.+|+....
T Consensus 346 ~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~ 425 (475)
T TIGR00924 346 PTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLA 425 (475)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 23333 5677777777766654321111 123333444445555555677899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeE
Q psy8366 435 SSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYF 475 (513)
Q Consensus 435 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 475 (513)
..+|..+++.+.....+..++...+...++.+++..++.++
T Consensus 426 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (475)
T TIGR00924 426 QAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMAL 466 (475)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 99999999998887777767777777777666665554443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-23 Score=203.14 Aligned_cols=364 Identities=13% Similarity=0.084 Sum_probs=236.0
Q ss_pred HHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHH--HHHHhhhhhhhHHHHHH-hhhhcchhhHHHH
Q psy8366 41 NFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWL--GSILFLFHPFGSIISGY-FLEYIGRKRLMIL 117 (513)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~--~s~~~l~~~i~~~~~g~-l~dr~Grr~~~~~ 117 (513)
....+..|+..+...+.+|.+. +|.|.|.+++|++ .+++.+...+.+|+++. ..||+||||..++
T Consensus 7 ~~ly~~~g~~~~~~~p~lp~~l------------~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~ 74 (390)
T TIGR02718 7 GLLYLSQGIPIGLAMDALPTLL------------REDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVL 74 (390)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH------------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHH
Confidence 4556777888888899999999 8889999999997 46778888888888844 7899999999755
Q ss_pred HhHHH-HHHHHHHH---hchh-HHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHH--
Q psy8366 118 VGFPF-FLGWILLY---LAET-VSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLI-- 190 (513)
Q Consensus 118 ~~~~~-~~~~~~~~---~~~~-~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l-- 190 (513)
...+. ++.....+ ...+ ...++..-++.++..+...+...++..|..++++++...+....+..+|.++++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~ 154 (390)
T TIGR02718 75 PMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTL 154 (390)
T ss_pred HHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55332 22222222 2222 33445556667777777888888888999988888999988988888888888854
Q ss_pred --hhhHhHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhcccccccc
Q psy8366 191 --YALTDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVA 268 (513)
Q Consensus 191 --~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (513)
.+.+|||..|++.+++.++..+..++++|+++. +.+.++.
T Consensus 155 ~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~~~----------------------------------- 196 (390)
T TIGR02718 155 VLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVA---SPEAPLA----------------------------------- 196 (390)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccchh-----------------------------------
Confidence 445599999999998887766655555443210 0000000
Q ss_pred ccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHH-HHHHH
Q psy8366 269 DSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTG-ILSIT 346 (513)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~-~~~~~ 346 (513)
...+ ...+.+++..+.......+.... ......+.+.++++.|++.+. +......+ ...++
T Consensus 197 ------------~~~~-~~~~l~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~ 259 (390)
T TIGR02718 197 ------------RRAS-LFRFFRRPLAWSLLALALLSAMT----AVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLL 259 (390)
T ss_pred ------------hHHH-HHHHHcCcCHHHHHHHHHHHHHH----HHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHH
Confidence 0011 22333333333333332222221 222334566777778998877 77666665 46677
Q ss_pred hhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHH-HHHhccccchhhhhhccccch-hhh
Q psy8366 347 GSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCF-WVSGYGMLPLPWMLLSEVFPL-QVR 424 (513)
Q Consensus 347 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~-~~~ 424 (513)
+.++.|++.||+|+|+.+..+..+.++..+........................ ...+ ...+...+...+..++ +.+
T Consensus 260 g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 338 (390)
T TIGR02718 260 GCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITG-ITSVAIYTAFMRFAGDGDQA 338 (390)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcccch
Confidence 789999999999999988877665533332222211000001111111111111 1121 2223334454555554 889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhh
Q psy8366 425 GIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIY 472 (513)
Q Consensus 425 ~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 472 (513)
++.+++.++..++|..++|.+.|.+.|..|+...|.+.+++.+++.++
T Consensus 339 g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 339 GTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888877777666543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-22 Score=194.88 Aligned_cols=378 Identities=14% Similarity=0.077 Sum_probs=216.9
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhh-cchhhHHHHHhHHHHHHHHHHHhch-hHHHHHHHHHHhhcccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEY-IGRKRLMILVGFPFFLGWILLYLAE-TVSIIMLGTVCMGLSVGCC 152 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~g~~~~ 152 (513)
+++|++.++.+++.+.+........+++|+++|| +|||+.++++.++.+++.+++++++ +.+.+.++|+++|+|.|..
T Consensus 50 ~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~ 129 (500)
T PRK09584 50 KQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLF 129 (500)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcc
Confidence 7899999999999888877767777899999999 5999999999999999999998875 5667778999999999999
Q ss_pred ccchhhhhhccCCccc--cchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHHHHH----HhccCchh
Q psy8366 153 EAPIISYIGEISEPRM--RGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLISAIFPILTMIMI----AFIPESPT 222 (513)
Q Consensus 153 ~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~----~~~~e~p~ 222 (513)
.+...+++.|++|+++ |+.+.++++.+.++|..+++.+++++ |||+.|++.++..++..+.. ..++|.++
T Consensus 130 ~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~ 209 (500)
T PRK09584 130 KANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGS 209 (500)
T ss_pred cCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCC
Confidence 9999999999998644 45678888888888888888776654 99999999876555544322 22333211
Q ss_pred hhhhcCChHHHHHHH-----------HHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhcc
Q psy8366 223 WLVSKGRLEEAERSL-----------RWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVR 291 (513)
Q Consensus 223 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (513)
.. .+++.+...... ......+. ..... ........ . .. .. ..+. . . .+
T Consensus 210 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~-~---~~-~~--~~~~---------~-~-~~ 268 (500)
T PRK09584 210 KP-DFEPINYRKLLLTIVGVVALIAIATWLLHNQ-EIARM-ALGVVALG-I---VV-IF--GKEA---------F-A-MK 268 (500)
T ss_pred CC-CccccchhhHHHHHHHHHHHHHHHHHHHhcc-hHHHH-HHHHHHHH-H---HH-HH--HHHH---------h-h-cC
Confidence 00 000011000000 00000000 00000 00000000 0 00 00 0000 0 0 00
Q ss_pred CCchhHHHHHHH--HHHHHHhhchhchhhhHHHHHHh------cCCCchhHHHHHHHHHHHHHhhhHH----HHhhcccC
Q psy8366 292 PEIVRPFIMIMI--LFFITIIASLQPMRPFLVEIFRT------FGLPMKSEWVLVLTGILSITGSFVS----TITVNKLG 359 (513)
Q Consensus 292 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~----g~l~d~~g 359 (513)
+..+++....+. +....++..+.-...++..+..+ .|+....+....+..+..++..++. +++.+|.+
T Consensus 269 ~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~ 348 (500)
T PRK09584 269 GAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLP 348 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCC
Confidence 000111111111 11111111111111222211111 1222223555566666666665555 55555555
Q ss_pred CchHHHHhhHHHHHHHHHHHHHHHhcCC---CchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHH
Q psy8366 360 KRGMTLWSTGINTFFTLMLSICAMNLQW---PGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSS 436 (513)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 436 (513)
..+.+.+++.+.+++++.+.......+. .+....+...++.........|....++.+..|++.||.++|+......
T Consensus 349 ~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a 428 (500)
T PRK09584 349 MPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTA 428 (500)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 6677788888888888877665421110 1122344444445555567788888999999999999999998876666
Q ss_pred HHHHHHHHHhhhhh----------hccchhHHHHHHHHHHHHHHhhe
Q psy8366 437 VVNFISTKTYINLT----------SWFGLHGTLFIYTLVSFLGFIYI 473 (513)
Q Consensus 437 ~g~~~~~~~~g~l~----------~~~g~~~~~~~~~~~~~~~~~~~ 473 (513)
+|..++..+.+... ...++...|...++++++..++.
T Consensus 429 ~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~ 475 (500)
T PRK09584 429 GAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLM 475 (500)
T ss_pred HHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 66666665554211 01135667777776665444433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-21 Score=183.21 Aligned_cols=359 Identities=15% Similarity=0.109 Sum_probs=236.8
Q ss_pred ccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcc-hhhHHHHHhHHHHHHHHHH
Q psy8366 51 FGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIG-RKRLMILVGFPFFLGWILL 129 (513)
Q Consensus 51 ~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G-rr~~~~~~~~~~~~~~~~~ 129 (513)
.+...|.+|... ++.|.|..|+|.+.++..+...++++++|.++||++ +||.+.+..++.++.....
T Consensus 18 ~G~~~p~~~~~L------------~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~ 85 (400)
T PF03825_consen 18 YGAFLPYLPLYL------------ESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL 85 (400)
T ss_pred HHHHHHHHHHHH------------HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 344456777777 788999999999999999999999999999999986 5777888888888877777
Q ss_pred HhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHH-----HHHhhhHh---HHHHHH
Q psy8366 130 YLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFII-----FLIYALTD---WRTTVL 201 (513)
Q Consensus 130 ~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~-----~~l~~~~~---wr~~f~ 201 (513)
...++++.+++..++..+......|...++..+... +++.-.+-.....++|-.++ ..+....+ ..+.++
T Consensus 86 ~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (400)
T PF03825_consen 86 AFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY 163 (400)
T ss_pred HHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence 888899999998888888888888888888888774 22333333333344444333 22333322 234556
Q ss_pred hhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhh
Q psy8366 202 ISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQ 281 (513)
Q Consensus 202 ~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (513)
+.+...++.....+.+|+.|+. +..+++. ++..
T Consensus 164 i~~~~~~ll~~~~l~lp~~~~~---~~~~~~~--------------------------------------------~~~~ 196 (400)
T PF03825_consen 164 IAAILSLLLAGFALFLPKTPPK---RSAKESV--------------------------------------------KKLL 196 (400)
T ss_pred HHHHHHHHHHHHHHhCCCCccc---cccCCCc--------------------------------------------cccc
Confidence 6665555555555667877621 0000000 0000
Q ss_pred hhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcC-CCchh-HHHHHHHHHHHHHhhhHHHHhhcccC
Q psy8366 282 LSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFG-LPMKS-EWVLVLTGILSITGSFVSTITVNKLG 359 (513)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g 359 (513)
..+.++.+++++. ...++... ...........|.+.++++.| .+... +...++..+.+++.-...+++..|+|
T Consensus 197 ~~~~~~llk~~~~-~~Fll~~~----l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g 271 (400)
T PF03825_consen 197 GLDALKLLKNPRF-LVFLLAAF----LIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFG 271 (400)
T ss_pred chHHHHHhcCccH-HHHHHHHH----HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1111333444332 22222222 222224455677888888877 65555 67777888999999999999999999
Q ss_pred CchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHH----HHHHHHhccccchhhhhhccccchhhhhHHHHHHHHH-
Q psy8366 360 KRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFC----TCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAAS- 434 (513)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~- 434 (513)
.++++.++.+..++=..++.... ++.+....... +.+..++ ........++.+..|++.|+++.++.+..
T Consensus 272 ~~~ll~~a~~~~~vR~~l~a~~~----~~~~~~~~~~~l~q~lhG~tf~-~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~ 346 (400)
T PF03825_consen 272 IKWLLLLALVAYAVRWLLYAYFS----DPWPFIVALQLLGQLLHGLTFG-LFHAASVRYIDRIAPPELRATAQGLYSALS 346 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence 99999999999888888777753 12232222222 2333332 23455557999999999999999998876
Q ss_pred HHHHHHHHHHHhhhhhhccchhH------HHHHHHHHHHHHHhheeEEcccC
Q psy8366 435 SSVVNFISTKTYINLTSWFGLHG------TLFIYTLVSFLGFIYIYFYVPET 480 (513)
Q Consensus 435 ~~~g~~~~~~~~g~l~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~ 480 (513)
..+|..+|..++|++.|+.|.+. .+.+.+++.++..++..++.|++
T Consensus 347 ~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 347 FGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred hhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 46999999999999999987553 34444444444444444344433
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=187.50 Aligned_cols=381 Identities=12% Similarity=0.140 Sum_probs=243.3
Q ss_pred cccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhh----hcchhhHHHHH-hHHH
Q psy8366 48 GMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLE----YIGRKRLMILV-GFPF 122 (513)
Q Consensus 48 ~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~~~~~-~~~~ 122 (513)
.+......+.++.+. +++|.+..+.+++..+..+...+.+|+.|+++| |+||||+++++ ....
T Consensus 17 q~~~~l~~~~l~~yl------------~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~ 84 (477)
T TIGR01301 17 QFGWALQLSLLTPYV------------QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV 84 (477)
T ss_pred HHHHHHHHHHHHHHH------------HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence 344444455566666 788999999999999999999999999999999 59999998774 6666
Q ss_pred HHHHHHHHhchhHH-----------------HHHHHHHHhhccccccccchhhhhhccCCcccc--chhhhHhhHHHHHH
Q psy8366 123 FLGWILLYLAETVS-----------------IIMLGTVCMGLSVGCCEAPIISYIGEISEPRMR--GSLSLFAGAACNFG 183 (513)
Q Consensus 123 ~~~~~~~~~~~~~~-----------------~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~lG 183 (513)
.++.++.+++++.. .++++-.+..++.....+...++++|.+|+++| +.+.++.+...++|
T Consensus 85 ~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG 164 (477)
T TIGR01301 85 AFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIG 164 (477)
T ss_pred HHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHH
Confidence 67777777776643 223333444557777888889999999998765 57999999999999
Q ss_pred HHHHHHHhhhH-------------------hHHHHHHhhhHHHHHHHHH-HHhccCchhhhhhcCChHHHHHHHHHhhCC
Q psy8366 184 VFIIFLIYALT-------------------DWRTTVLISAIFPILTMIM-IAFIPESPTWLVSKGRLEEAERSLRWVRGW 243 (513)
Q Consensus 184 ~~~~~~l~~~~-------------------~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~ 243 (513)
.++|+.++... +.|+.|++.+++.++.... .+..+|.|... .++.++ + +.+..
T Consensus 165 ~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~--~---~~~~~ 237 (477)
T TIGR01301 165 NVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--SDDFIN--S---EAAPP 237 (477)
T ss_pred HHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchh--h---hcccc
Confidence 99988877543 5677888888877776664 55678865311 000000 0 00000
Q ss_pred CchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccC-CchhHHHHHHHHHHHHHhhchhchhhhHHH
Q psy8366 244 SKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRP-EIVRPFIMIMILFFITIIASLQPMRPFLVE 322 (513)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (513)
+ +........++++.+++- +..+...+.-++..+. +..+..|.+.
T Consensus 238 -~-----------------------------~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a----~f~~~~y~T~ 283 (477)
T TIGR01301 238 -S-----------------------------KHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIA----WFPFILFDTD 283 (477)
T ss_pred -c-----------------------------ccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHH----HHHHHHhccH
Confidence 0 000001122223333322 2223333333333322 3333344444
Q ss_pred HHHh--cCCCc------hh----H-HHHHHHHHHHHHhhhHHHHhhcccCC-chHHHHhhHHHHHHHHHHHHHHHhcC--
Q psy8366 323 IFRT--FGLPM------KS----E-WVLVLTGILSITGSFVSTITVNKLGK-RGMTLWSTGINTFFTLMLSICAMNLQ-- 386 (513)
Q Consensus 323 ~~~~--~g~~~------~~----~-~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~-- 386 (513)
+..+ ++-++ +. + +......+...+.+++..++.+|+|+ |+....+.++.++++....+.....+
T Consensus 284 ~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~ 363 (477)
T TIGR01301 284 WMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNS 363 (477)
T ss_pred HHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 4432 22211 01 2 34445566666777888999999985 67768887888887777765442110
Q ss_pred -C----------C---chhhHHHHHHHHHHHhccccchhhhhhccccch--hhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8366 387 -W----------P---GWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPL--QVRGIASGITAASSSVVNFISTKTYINLT 450 (513)
Q Consensus 387 -~----------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 450 (513)
. + .+..++.+...+... .....+.++++++..|+ +..|..+|+.|.+..+...+.....|.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~-A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~ 442 (477)
T TIGR01301 364 RYYDGDGESLPPPTGIKASALIVFAILGIPL-AITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWD 442 (477)
T ss_pred ccccccccccCcchhhHHHHHHHHHHhhHHH-HHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 133333444444333 34567888999998884 45699999999999999999998888866
Q ss_pred hccc--hhHHHHHHHHHHHHHHhheeEEcccCCC
Q psy8366 451 SWFG--LHGTLFIYTLVSFLGFIYIYFYVPETED 482 (513)
Q Consensus 451 ~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (513)
+..| ....+.+.++..+++.+++++.+|+.+.
T Consensus 443 ~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 443 QLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 6665 3446667777777777777777776653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=193.03 Aligned_cols=330 Identities=11% Similarity=0.095 Sum_probs=206.9
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhh----hcchhhH-HHHHhHHHHHHHHHHHhchh------HHHHHHHHH
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLE----YIGRKRL-MILVGFPFFLGWILLYLAET------VSIIMLGTV 143 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~-~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~ 143 (513)
+.+|++..++|.+..+..+..++..|+.|.++| |+||||. ++++.+..+++..++...++ +..+++..+
T Consensus 35 ~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~ 114 (473)
T PRK10429 35 DVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYI 114 (473)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 677999999999999999999999999999999 6799555 66787777777666644331 445666777
Q ss_pred HhhccccccccchhhhhhccC-CccccchhhhHhhHHHHHHHHHHHHHhh----h-------HhHHHHHHhhhHHHHHHH
Q psy8366 144 CMGLSVGCCEAPIISYIGEIS-EPRMRGSLSLFAGAACNFGVFIIFLIYA----L-------TDWRTTVLISAIFPILTM 211 (513)
Q Consensus 144 l~G~g~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~lG~~~~~~l~~----~-------~~wr~~f~~~~~~~~~~~ 211 (513)
+.+++.....+...++..|.. ++++|.+..++...+.++|..+.+.+.. . .+|+....+.+++.++..
T Consensus 115 l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~ 194 (473)
T PRK10429 115 LWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVST 194 (473)
T ss_pred HHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 788888888888999999998 5899999998876666666444433221 1 257777777777666555
Q ss_pred HH-HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhc
Q psy8366 212 IM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLV 290 (513)
Q Consensus 212 ~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (513)
+. .+..+|.++. .+.+. +++++.+..+.++.++
T Consensus 195 ~~~~~~~~e~~~~----~~~~~------------------------------------------~~~~~~~~~~~~~~~~ 228 (473)
T PRK10429 195 IITLRNVHEVYSS----DNQVS------------------------------------------AEGSHLTLKDIVALIY 228 (473)
T ss_pred HHHHcCceecCCc----ccccc------------------------------------------ccccCCCHHHHHHHHh
Confidence 43 3346664310 00000 0000001122244444
Q ss_pred cCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhH
Q psy8366 291 RPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTG 369 (513)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 369 (513)
+++.++..+...++... .......+.+++.+....+... +.......++.+++.++.+++.||+|+|+.+..+..
T Consensus 229 ~n~~~~~ll~~~~~~~~----~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~ 304 (473)
T PRK10429 229 KNDQLSCLLGMALAYNI----ASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASI 304 (473)
T ss_pred cCHHHHHHHHHHHHHHH----HHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 55433333332222222 1222223333333322222233 555666678889999999999999999999887777
Q ss_pred HHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccc-------hhhhhHHHHHHHHHHHHHHHHH
Q psy8366 370 INTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFP-------LQVRGIASGITAASSSVVNFIS 442 (513)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~ 442 (513)
+..++.+.+.........+.+..++...+.+.+. ....+..+++++|..+ .+..|..+|..+....++..++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~-~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~ 383 (473)
T PRK10429 305 FPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGT-ALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFA 383 (473)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHH
Confidence 6665554443321111222232222222322222 3344566678888855 3445778999999999999999
Q ss_pred HHHhhhhhhccch
Q psy8366 443 TKTYINLTSWFGL 455 (513)
Q Consensus 443 ~~~~g~l~~~~g~ 455 (513)
+.+.|.+.+..|+
T Consensus 384 ~~i~g~~l~~~Gy 396 (473)
T PRK10429 384 AFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999887765
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-22 Score=169.61 Aligned_cols=388 Identities=14% Similarity=0.097 Sum_probs=243.2
Q ss_pred hhhHHHHHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhh
Q psy8366 29 SACSQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEY 108 (513)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr 108 (513)
+..++..+.+..|+.-|..-++...++.+..+.. .|.+++.++..++.+.|.....+.+++.|++.||
T Consensus 38 ~l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk------------~d~ni~~akftLlYsvYSwPNvVlcffgGflidr 105 (459)
T KOG4686|consen 38 ALGHRFMALVFMCLLGFGSYFCYDAPGALQIDFK------------LDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDR 105 (459)
T ss_pred hhhhHHHHHHHHHHhcccceeecCCchhhhhhhh------------cccccceeeeeeeeeeccCCCEEEeeecceeehh
Confidence 4456667777778777777777777777777777 8999999999999999999999999999999996
Q ss_pred -cchhhHHHHHhHHHHHHHHHHH---hchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHH
Q psy8366 109 -IGRKRLMILVGFPFFLGWILLY---LAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGV 184 (513)
Q Consensus 109 -~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 184 (513)
+|-|..-++-+++..+|.++++ ..+.+|.+.++||+.|+|.-..-++-..+..-|+..|+.+.++|+.....-+|.
T Consensus 106 ~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gs 185 (459)
T KOG4686|consen 106 RFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGS 185 (459)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhc
Confidence 7888777777777777777775 568999999999999999888888888999999999999999999988888886
Q ss_pred HHH----HHHhhhHhHHHHHHhhhHHHHHHHHHHHhccCchhhhhhc-CChHHHHHHHHHhhCCCchhhHHHHHHHHHHh
Q psy8366 185 FII----FLIYALTDWRTTVLISAIFPILTMIMIAFIPESPTWLVSK-GRLEEAERSLRWVRGWSKKHKVRVEFEQLVKD 259 (513)
Q Consensus 185 ~~~----~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (513)
.+- +.+....+--.+=.....+++...+-...+..+---.... -.++.+++.+.+-.+.
T Consensus 186 tvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e~g~---------------- 249 (459)
T KOG4686|consen 186 TVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLEEGF---------------- 249 (459)
T ss_pred eeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCc----------------
Confidence 553 3333332110000000001110000000000000000000 0011122111110000
Q ss_pred hccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHH
Q psy8366 260 TNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVL 337 (513)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~ 337 (513)
..+..+ +.+ .+.+..+++... ............+....|.+++ .+|+|+.. +.+.
T Consensus 250 -------------~Ge~pk-------Ltd--v~~f~ppfw~~~-iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~ 306 (459)
T KOG4686|consen 250 -------------LGEEPK-------LTD--VNTFYPPFWVLV-IICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNIL 306 (459)
T ss_pred -------------ccCCcc-------ccc--ccccCccHHHHH-HHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchh
Confidence 000000 111 111112222222 2222223333444455666765 69999876 6777
Q ss_pred HHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhcc
Q psy8366 338 VLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSE 417 (513)
Q Consensus 338 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (513)
+.......+.+++.|.++||+|++...+.+..+..+..-....+.. .++|. ...+.+..+. ......|..++.
T Consensus 307 s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~---lsPy~---~m~~lGLsys-llAcslWP~va~ 379 (459)
T KOG4686|consen 307 STVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF---LSPYT---SMTFLGLSYS-LLACSLWPCVAS 379 (459)
T ss_pred hhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh---ccHHH---HHHHHhhhHH-HHHHHHhhhhhh
Confidence 7777788889999999999999998887766655554433333321 13333 3333333332 222334567788
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccc-h---hHHHHHHHHHHHHHHhhee
Q psy8366 418 VFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFG-L---HGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 418 ~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~---~~~~~~~~~~~~~~~~~~~ 474 (513)
+.|.++.|++.|.++.+.++|-++.|.+.|.+.|..| + +..|+..+.+.+....+.+
T Consensus 380 ~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~ 440 (459)
T KOG4686|consen 380 LVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILF 440 (459)
T ss_pred hCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999876 2 2334445555555554443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-22 Score=192.31 Aligned_cols=372 Identities=15% Similarity=0.052 Sum_probs=227.5
Q ss_pred HHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcc-----hhhHH
Q psy8366 41 NFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIG-----RKRLM 115 (513)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G-----rr~~~ 115 (513)
....+..|+.......+.|.+. +++|++.++++...++..+...+-.+ +|+++||++ ||+.+
T Consensus 32 ~~~y~~qGl~~l~~~~~~~~l~------------~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l 98 (468)
T TIGR00788 32 LQVLFVKGIAGLMRLPLSPMLT------------DDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYL 98 (468)
T ss_pred HHHHHHhhHHHHhhhhhhHHHH------------HhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHH
Confidence 3344566666333334455555 78999999999999999999998666 999999998 77777
Q ss_pred HHHhHHHH-HHHHHHHhchhHHHHH-HHHHHhhccccccccchhhhhhccCCccccchhhhHhh---HHHHHHHHHHHHH
Q psy8366 116 ILVGFPFF-LGWILLYLAETVSIIM-LGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAG---AACNFGVFIIFLI 190 (513)
Q Consensus 116 ~~~~~~~~-~~~~~~~~~~~~~~l~-~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~lG~~~~~~l 190 (513)
+++.++.+ ++....+..++..... +.+++.+++.+...++..++..|..+ +++....+... ...++|.++++.+
T Consensus 99 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l 177 (468)
T TIGR00788 99 VLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLL 177 (468)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHH
Confidence 88877763 4433344445544444 48999999999999999999999998 55544333332 2222455555444
Q ss_pred ----hhhHhHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhcccccc
Q psy8366 191 ----YALTDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLY 266 (513)
Q Consensus 191 ----~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (513)
....+||..|++.+++.++..+..++++|++.....+.+.++ ...... .........
T Consensus 178 ~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~------------- 238 (468)
T TIGR00788 178 GGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYL-EMNMAL-----LTLGVLANV------------- 238 (468)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccc-hhhhhh-----hhhhHHHHH-------------
Confidence 444589999999988888776666778885310000000000 000000 000000000
Q ss_pred ccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHH
Q psy8366 267 VADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSI 345 (513)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~ 345 (513)
.+...+.++.+.++. .+..+...++.+............+.+ +..|+++.. +....+.+++.+
T Consensus 239 ------------~~~~~~l~~~l~~~~-i~~~l~fifl~~~~~~~~~~~~f~~~~---~~lG~s~~~~G~~~~~~~v~~i 302 (468)
T TIGR00788 239 ------------KVQILGLRGAIQLLE-IAKPLIFIFLSYANLPGASGSVFCATT---QCLPGGPSFSGMSKVVGNLGSL 302 (468)
T ss_pred ------------HHHHHHHHHHHhcHH-HHHHHHHHHHHHhhcCCCCceeEEEEc---ccCCCCcchhhhHHHHHHHHHH
Confidence 000112133333322 222122222201111111111111222 357888877 888888999999
Q ss_pred HhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHH--Hh--cC-CCchhhHHHHHHHHHHHhccccchhhhhhccccc
Q psy8366 346 TGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICA--MN--LQ-WPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFP 420 (513)
Q Consensus 346 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 420 (513)
++..+.+++.+|++.|+.+.++.++.+++........ +. .. .+.+.......+.....+....+. ..++.+..|
T Consensus 303 ~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p 381 (468)
T TIGR00788 303 CGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCP 381 (468)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCC
Confidence 9999999999999999999888888877664432111 00 00 112222233333444444444554 588999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccc-----hhHHHHHH
Q psy8366 421 LQVRGIASGITAASSSVVNFISTKTYINLTSWFG-----LHGTLFIY 462 (513)
Q Consensus 421 ~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-----~~~~~~~~ 462 (513)
++.+|+..|+.+++.++|..+++.+++.+.+..| ++..+...
T Consensus 382 ~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i 428 (468)
T TIGR00788 382 SGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLI 428 (468)
T ss_pred CCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHH
Confidence 9999999999999999999999999999999888 55544433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-21 Score=186.91 Aligned_cols=321 Identities=14% Similarity=0.197 Sum_probs=205.6
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhh----cchhhH-HHHHhHHHHHHHHHHHhchh------HHHHHHHHH
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEY----IGRKRL-MILVGFPFFLGWILLYLAET------VSIIMLGTV 143 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr----~Grr~~-~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~ 143 (513)
+++|++..++|.+.++..+..++..|+.|.++|| +||||. ++.+.+..+++.++....++ +..+++..+
T Consensus 38 ~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~ 117 (444)
T PRK09669 38 DVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYI 117 (444)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 7899999999999999999999999999999998 888666 55677777777766555543 456666777
Q ss_pred HhhccccccccchhhhhhccC-CccccchhhhHhhHHHHHHHHHHHHH----hhh-------HhHHHHHHhhhHHHHHHH
Q psy8366 144 CMGLSVGCCEAPIISYIGEIS-EPRMRGSLSLFAGAACNFGVFIIFLI----YAL-------TDWRTTVLISAIFPILTM 211 (513)
Q Consensus 144 l~G~g~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~lG~~~~~~l----~~~-------~~wr~~f~~~~~~~~~~~ 211 (513)
+.+.+.........++.+|+. ++++|++..++...+..+|..+++.+ ... .+|+..+.+.+++.++..
T Consensus 118 l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~ 197 (444)
T PRK09669 118 LLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLF 197 (444)
T ss_pred HHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 777777777777889999988 46889998888887777776665543 221 278888888887776665
Q ss_pred HH-HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhc
Q psy8366 212 IM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLV 290 (513)
Q Consensus 212 ~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (513)
+. .+..+|.++. .+ ++ +.+...+ ++.++
T Consensus 198 ~~~~~~~~e~~~~----~~-~~---------------------------------------------~~~~~~~-~~~~~ 226 (444)
T PRK09669 198 FCCFFMTKERYTP----EV-DN---------------------------------------------SSSVWKD-LKLLL 226 (444)
T ss_pred HHHhCCeEEecCC----CC-cC---------------------------------------------CCCHHHH-HHHHh
Confidence 53 3334553210 00 00 0000111 44445
Q ss_pred cCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCC-chh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhh
Q psy8366 291 RPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLP-MKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWST 368 (513)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 368 (513)
+++.++......++....... .....+++.+. .++ .+. ........+..+++.++.+++.||+|+|+.+..+.
T Consensus 227 ~n~~~~~l~~~~~~~~~~~~~----~~~~~~y~~~~-~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~ 301 (444)
T PRK09669 227 GNSQWRIMFIFNVVLLTAVVT----RGGATLYYVNY-VLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTI 301 (444)
T ss_pred CCchHHHHHHHHHHHHHHHHH----Hhhhhheeeee-ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 555444443333322222211 11122222221 122 222 44455566777888899999999999999988776
Q ss_pred HHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccc-------hhhhhHHHHHHHHHHHHHHHH
Q psy8366 369 GINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFP-------LQVRGIASGITAASSSVVNFI 441 (513)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~ 441 (513)
.+..+....+.... .++.+...+...+.+.+. ....+..+++++|..+ .+..|..+|+.++...+|..+
T Consensus 302 ~~~~~~~~~~~~~~---~~~~~~~~~~~~i~g~~~-~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~al 377 (444)
T PRK09669 302 VAFVILSALIFFIP---PSNVWLIFALNILFNFIQ-NLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAI 377 (444)
T ss_pred HHHHHHHHHHHHhC---cchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHH
Confidence 65554333332221 112332333333333333 3455777788888864 234577889999999999999
Q ss_pred HHHHhhhhhhccch
Q psy8366 442 STKTYINLTSWFGL 455 (513)
Q Consensus 442 ~~~~~g~l~~~~g~ 455 (513)
++.+.|.+.+..|+
T Consensus 378 g~~i~g~ll~~~Gy 391 (444)
T PRK09669 378 GGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999988776
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-19 Score=170.27 Aligned_cols=326 Identities=15% Similarity=0.197 Sum_probs=229.1
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhh----hcchhhH-HHHHhHHHHHHHHHHHhchh------HHHHHHHHH
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLE----YIGRKRL-MILVGFPFFLGWILLYLAET------VSIIMLGTV 143 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~-~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~ 143 (513)
+.+|+++..+|.+..+.-+--++..|+.|.+.| |+||+|+ ++++.+.+++.+.++-.+++ ....++...
T Consensus 41 dv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~ 120 (467)
T COG2211 41 DVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYM 120 (467)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHH
Confidence 778999999999999999999999999999999 5898877 77787999999999887773 556777889
Q ss_pred HhhccccccccchhhhhhccCC-ccccchhhhHhhHHHHHHHHHHHHHhh-----------hHhHHHHHHhhhHHHHHHH
Q psy8366 144 CMGLSVGCCEAPIISYIGEISE-PRMRGSLSLFAGAACNFGVFIIFLIYA-----------LTDWRTTVLISAIFPILTM 211 (513)
Q Consensus 144 l~G~g~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~lG~~~~~~l~~-----------~~~wr~~f~~~~~~~~~~~ 211 (513)
+.+++.......-.++..|+.+ ++||.+..++.+.+.++|.++...+.. ..||+...++.++++.+..
T Consensus 121 l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~ 200 (467)
T COG2211 121 LLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILL 200 (467)
T ss_pred HHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986 789999999999999998766544322 2288888888888887777
Q ss_pred HH-HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhc
Q psy8366 212 IM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLV 290 (513)
Q Consensus 212 ~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (513)
+. ++-++|.+.. +.+.+ +....+..+.+..++
T Consensus 201 l~~~~~v~ER~~~---~~~~~--------------------------------------------~~~~~~~~~~~~~~~ 233 (467)
T COG2211 201 LFCFFNVKERVVE---TQPTK--------------------------------------------TGVKLKLKDSFLLIF 233 (467)
T ss_pred HHHHHHhhcccCc---cccCc--------------------------------------------ccccccHHHHHHHHH
Confidence 64 4446665420 00000 000000111144555
Q ss_pred cCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhh
Q psy8366 291 RPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWST 368 (513)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 368 (513)
+++.++...+..++.... .+.......+|.+ ..|.+... .........+.+++.++..++.+|+|+|+++.++.
T Consensus 234 ~Nrp~~~~l~~~l~~~~~----~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~ 309 (467)
T COG2211 234 KNRPLLLLLLMNLLLFIA----FNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGL 309 (467)
T ss_pred ccchHHHHHHHHHHHHHH----HHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHH
Confidence 665554444433322222 2222233333332 23333333 45566666677777999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccc-------hhhhhHHHHHHHHHHHHHHHH
Q psy8366 369 GINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFP-------LQVRGIASGITAASSSVVNFI 441 (513)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~ 441 (513)
++..++.+++.+.. .+.....++..+..........++.+++++|... .+..|...|...++..+|.++
T Consensus 310 ~~~~i~~~~~~f~~----~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~al 385 (467)
T COG2211 310 LLLAVGYLLLYFTP----AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLAL 385 (467)
T ss_pred HHHHHHHHHHHhhc----CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHH
Confidence 99999888887765 1223333333233333335567888999998743 345588999999999999999
Q ss_pred HHHHhhhhhhccch
Q psy8366 442 STKTYINLTSWFGL 455 (513)
Q Consensus 442 ~~~~~g~l~~~~g~ 455 (513)
+..+.|+..+..||
T Consensus 386 a~~~~g~~L~~~Gy 399 (467)
T COG2211 386 AGFIPGWILGAIGY 399 (467)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999998887763
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-19 Score=170.75 Aligned_cols=360 Identities=14% Similarity=0.110 Sum_probs=205.6
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhc-chhhHHHHHhHHHHHHHHHHHhch-hHHHHHHHHHHhhcccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYI-GRKRLMILVGFPFFLGWILLYLAE-TVSIIMLGTVCMGLSVGCC 152 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~g~~~~ 152 (513)
+++|+++.+.+.+.+.+.....++.+++|+++||+ ||||+++++.++.+++.++++..+ +...+.++..+.++|.|..
T Consensus 38 ~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~ 117 (493)
T PRK15462 38 NQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLF 117 (493)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccc
Confidence 57899999999999999999999999999999999 999999999999999988776543 2233444445555667777
Q ss_pred ccchhhhhhccCCcc--ccchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHHHHHHhccCchhh-hh
Q psy8366 153 EAPIISYIGEISEPR--MRGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLISAIFPILTMIMIAFIPESPTW-LV 225 (513)
Q Consensus 153 ~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~-~~ 225 (513)
.+...++++|.+|++ +|....++...+.++|..++|.+...+ |||+.|.+.++..++..+..++..+.... ..
T Consensus 118 ~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~ 197 (493)
T PRK15462 118 KSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRG 197 (493)
T ss_pred cccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Confidence 788889999999875 799999999999999999998887665 89999998766544444433322111000 00
Q ss_pred hcCChHHHHHHHHHhhCC----------CchhhHHHHH-HHHHHhhc-cccccccccccchhhcchhhhhhhhhhhccCC
Q psy8366 226 SKGRLEEAERSLRWVRGW----------SKKHKVRVEF-EQLVKDTN-SATLYVADSEYTTDQRKSSQLSKLLNYLVRPE 293 (513)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (513)
.+.+..+.++........ -......... ........ .......... .. . .++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------------~-~~~~ 262 (493)
T PRK15462 198 VNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIY-RK-------------A-ENQK 262 (493)
T ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-------------c-CCHH
Confidence 000000000000000000 0000000000 00000000 0000000000 00 0 0000
Q ss_pred chhHHHH--HHHHHHHHHhhchhchhhhHHHHHHh------cCCCchhHHHHHHHHHHHHHhhhHHHHhhcccCC--ch-
Q psy8366 294 IVRPFIM--IMILFFITIIASLQPMRPFLVEIFRT------FGLPMKSEWVLVLTGILSITGSFVSTITVNKLGK--RG- 362 (513)
Q Consensus 294 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--~~- 362 (513)
-+++... ...+....++..+.-...-+..+.++ .|+.....+..++..+..++.+++.+++-.|..+ |.
T Consensus 263 er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~ 342 (493)
T PRK15462 263 QRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTV 342 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 0111111 11111111111111111112222221 2333334677778888777777777776555522 21
Q ss_pred ----HHHHhhHHHHHHHHHHHHHHHhcC---CCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHH
Q psy8366 363 ----MTLWSTGINTFFTLMLSICAMNLQ---WPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASS 435 (513)
Q Consensus 363 ----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 435 (513)
-..++..+.+++++.+.+.....+ ..+...++...++...+.....|+..+.++++.|++.+|..+|+.....
T Consensus 343 s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~ 422 (493)
T PRK15462 343 RIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLS 422 (493)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 256777888888777765443211 1233345555566667778889999999999999999999999986643
Q ss_pred -HHHHHHHHHHhhhh
Q psy8366 436 -SVVNFISTKTYINL 449 (513)
Q Consensus 436 -~~g~~~~~~~~g~l 449 (513)
.+|..++..+.+..
T Consensus 423 ~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 423 GAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHHh
Confidence 56666666655544
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-20 Score=167.74 Aligned_cols=392 Identities=17% Similarity=0.158 Sum_probs=263.7
Q ss_pred ccchhhHHHHHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHh
Q psy8366 26 GFRSACSQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYF 105 (513)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l 105 (513)
..|...++|+..++.++..+..++.....+++..... ..++ +....-|+.-+|++.+....+++-|+
T Consensus 36 ~~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~------------~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ 102 (480)
T KOG2563|consen 36 GHRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVN------------SFYG-SSSAADWLSMIYMVVSVPFGFAAMWI 102 (480)
T ss_pred ccccchhHhHHHHHHHHHHhcCcchheeehhHHHHHH------------HHhc-chHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 3467788999999999999999999888887777777 6777 77778899999999999999999999
Q ss_pred hhhcchhhHHHHHhHHHHHHHHHHHhch------hHH--HHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhh
Q psy8366 106 LEYIGRKRLMILVGFPFFLGWILLYLAE------TVS--IIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAG 177 (513)
Q Consensus 106 ~dr~Grr~~~~~~~~~~~~~~~~~~~~~------~~~--~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 177 (513)
.||+|-|...+++..+.++|+.+-..+. .++ ....+..+.+.+.-........+..-|+|+++|..+..+-.
T Consensus 103 ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v 182 (480)
T KOG2563|consen 103 LDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGV 182 (480)
T ss_pred hcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHH
Confidence 9999999999999999999999987663 445 67788999999888777777788888999999999999999
Q ss_pred HHHHHHHHHHHHHhhhH----------hHHH--HHHhhhHHHHHHHHH-HHhccCchhhhhhcCChHHHHHHHHHhhCCC
Q psy8366 178 AACNFGVFIIFLIYALT----------DWRT--TVLISAIFPILTMIM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWS 244 (513)
Q Consensus 178 ~~~~lG~~~~~~l~~~~----------~wr~--~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~ 244 (513)
++..+|..++.++...+ .|.. .|+....+..+.+++ .+..++.|+.. ....++.. +
T Consensus 183 ~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tP---ps~s~~~~--~------ 251 (480)
T KOG2563|consen 183 MGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTP---PSASQAAL--Q------ 251 (480)
T ss_pred hcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC---CchhHhhh--h------
Confidence 99888888887775443 5655 355444444443342 33344444311 01011000 0
Q ss_pred chhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHH
Q psy8366 245 KKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIF 324 (513)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (513)
+.....+ .+..++++.+-...+. +......++...+.+...+
T Consensus 252 ---------------------------------~~~f~~s-i~~~~~n~~F~il~~~----ygi~~g~F~~l~~~l~~~l 293 (480)
T KOG2563|consen 252 ---------------------------------DASFPKS-IKSCFKNRQFIILAIC----YGIGLGLFNSLSTLLNLAL 293 (480)
T ss_pred ---------------------------------cCcHHHH-HHHHHcCccHHHHHHH----HhhhHHHHHHHHHHhhhcc
Confidence 0001222 3444444333222222 2222222344444444333
Q ss_pred HhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCc-hHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHH
Q psy8366 325 RTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKR-GMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWV 402 (513)
Q Consensus 325 ~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (513)
...|++... |+......+++++++.+.|.+.||.+.- .+.++......++...+..+. ......++ +.......+.
T Consensus 294 ~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t-~~~~~~vi-v~~t~~~~g~ 371 (480)
T KOG2563|consen 294 CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCT-LFLGDSVI-VFTTCGLLGF 371 (480)
T ss_pred ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccCCceEe-hhhhHHHHHH
Confidence 445665543 8888888999999999999999999874 444444444444433333222 11222333 3333344444
Q ss_pred HhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccc----hhHHHHHHHHHHHHHHhheeEEcc
Q psy8366 403 SGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFG----LHGTLFIYTLVSFLGFIYIYFYVP 478 (513)
Q Consensus 403 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~ 478 (513)
++.+..|+..-+..|..-|..-++..|+.+..+++.+++-..+.+...+..+ +....+.....++++..+..++.+
T Consensus 372 ~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~ 451 (480)
T KOG2563|consen 372 FGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRP 451 (480)
T ss_pred hhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhh
Confidence 4567788888888887655788999999999999999999999998888777 444445555555555555554444
Q ss_pred cCC
Q psy8366 479 ETE 481 (513)
Q Consensus 479 ~~~ 481 (513)
+.+
T Consensus 452 ~y~ 454 (480)
T KOG2563|consen 452 DYR 454 (480)
T ss_pred hHH
Confidence 433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-19 Score=176.61 Aligned_cols=322 Identities=11% Similarity=0.111 Sum_probs=203.1
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhh----cchhhH-HHHHhHHHHHHHHHHHhchh------HHHHHHHHH
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEY----IGRKRL-MILVGFPFFLGWILLYLAET------VSIIMLGTV 143 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr----~Grr~~-~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~ 143 (513)
+..|+++..+|.+..+.-+..++..|+.|.++|| +||||. ++++.+..+++.+++-..++ +..+.+..+
T Consensus 38 ~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~ 117 (460)
T PRK11462 38 DIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYT 117 (460)
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 6789999999999999999999999999999995 899877 55677788877777655442 445666777
Q ss_pred HhhccccccccchhhhhhccCC-ccccchhhhHhhHHHHHHHHHHHHHhh----h-------HhHHHHHHhhhHHHHHHH
Q psy8366 144 CMGLSVGCCEAPIISYIGEISE-PRMRGSLSLFAGAACNFGVFIIFLIYA----L-------TDWRTTVLISAIFPILTM 211 (513)
Q Consensus 144 l~G~g~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~lG~~~~~~l~~----~-------~~wr~~f~~~~~~~~~~~ 211 (513)
+..++.......-.++..|..+ ++||++..++...+..+|..+++.+.. . .+|+....+.+++.++..
T Consensus 118 ~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~ 197 (460)
T PRK11462 118 LLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML 197 (460)
T ss_pred HHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 7888888888888899999987 889999999999998888766654422 1 257877777777666655
Q ss_pred HH-HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhc
Q psy8366 212 IM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLV 290 (513)
Q Consensus 212 ~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (513)
.+ ....+|.++. +.++ . +....++..+
T Consensus 198 ~i~~~~~kE~~~~-----~~~~--------------~---------------------------------~~~~~l~~~~ 225 (460)
T PRK11462 198 AFCFFTTKERVEA-----PPTT--------------T---------------------------------SMREDLRDIW 225 (460)
T ss_pred HHHHhcceeccCC-----CccC--------------C---------------------------------CHHHHHHHHh
Confidence 43 3334553210 0000 0 0011144455
Q ss_pred cCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchhHHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHH
Q psy8366 291 RPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGI 370 (513)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 370 (513)
+++.++......++....... ......|+..+. .|.....+.......+..+++.+++++++||+++|+.+..+..+
T Consensus 226 ~Nk~~~~l~~~~~~~~~~~~~-~~~~~~y~~~y~--~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~ 302 (460)
T PRK11462 226 QNDQWRIVGLLTIFNILAVCV-RGGAMMYYVTWI--LGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNAL 302 (460)
T ss_pred CChHHHHHHHHHHHHHHHHHH-HHhHhhhhhhhh--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 555444443333222222222 222223333332 22222224556677788899999999999999999887655444
Q ss_pred HHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccc-------hhhhhHHHHHHHHHHHHHHHHHH
Q psy8366 371 NTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFP-------LQVRGIASGITAASSSVVNFIST 443 (513)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~ 443 (513)
..+..+++.+.. ..+.+...+..++.+.+. ....+..+++.+|..+ .+..|...+...+...+|..+++
T Consensus 303 ~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~-~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~ 378 (460)
T PRK11462 303 LAVISLAMFFVP---MQASITMFVFIFVIGVLH-QLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGG 378 (460)
T ss_pred HHHHHHHHHHhc---hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 433333332221 111212222222222222 2334555667777644 23346666777789999999999
Q ss_pred HHhhhhhhccch
Q psy8366 444 KTYINLTSWFGL 455 (513)
Q Consensus 444 ~~~g~l~~~~g~ 455 (513)
.+.|.+.+..|+
T Consensus 379 ~i~g~iL~~~Gy 390 (460)
T PRK11462 379 ALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHcCC
Confidence 999988876654
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-19 Score=171.05 Aligned_cols=346 Identities=14% Similarity=0.161 Sum_probs=233.5
Q ss_pred hhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHH-HhHHHHHHHHHHHhc--hhHHHHHHHHHHhhccccccccchhh
Q psy8366 82 EQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMIL-VGFPFFLGWILLYLA--ETVSIIMLGTVCMGLSVGCCEAPIIS 158 (513)
Q Consensus 82 ~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~g~~~~~~~~~~ 158 (513)
+..++..++..+..++..|+.|.++|+-|+||.++. ...+..+++.+..+. .+++...+.-++.-++.+...+...+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788999999999999999999999998777544 445555566666663 34555566667777788888888999
Q ss_pred hhhccCCcccc--------------------------chhhhHhhHHHHHHHHHHHHHhhhH------------hHHHHH
Q psy8366 159 YIGEISEPRMR--------------------------GSLSLFAGAACNFGVFIIFLIYALT------------DWRTTV 200 (513)
Q Consensus 159 ~~~~~~~~~~r--------------------------~~~~~~~~~~~~lG~~~~~~l~~~~------------~wr~~f 200 (513)
++.|..+++++ ++..+.-.....+|.++.-++...+ +-|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999998888 8988888888888887765553332 358888
Q ss_pred HhhhHHHHHHHH-HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcch
Q psy8366 201 LISAIFPILTMI-MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKS 279 (513)
Q Consensus 201 ~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (513)
.+.++.-++..+ ..+++||.|+....+..........+++
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l--------------------------------------- 270 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRL--------------------------------------- 270 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHH---------------------------------------
Confidence 888887766555 6777888764200000000001111110
Q ss_pred hhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcc
Q psy8366 280 SQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGSFVSTITVNK 357 (513)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~ 357 (513)
+.. ++..++.+.... +++..+....+.+.+......+.. ..|++..+ .....+..+.+++|+++.|++.||
T Consensus 271 --~~t-~k~~~~~~~~~~----fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r 343 (477)
T PF11700_consen 271 --WRT-FKEIRKLRQLFL----FLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR 343 (477)
T ss_pred --HHH-HHHHHhChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001 233333222222 233333333445556666666665 68998887 677788899999999999999999
Q ss_pred cCCc--hHHHHhhHHHHHHHHHHHH--HHHh-cCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHH
Q psy8366 358 LGKR--GMTLWSTGINTFFTLMLSI--CAMN-LQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITA 432 (513)
Q Consensus 358 ~g~~--~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 432 (513)
+|.| +.+..+..+..+..+.-.+ .... ...+.+...+...+.+.+ ..+..+..-++.+|+.|+++.+..+|++.
T Consensus 344 ~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~-~G~~qs~sRs~~~~LiP~g~e~efFgly~ 422 (477)
T PF11700_consen 344 FGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLF-MGGIQSASRSLFSRLIPPGREAEFFGLYA 422 (477)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 9998 7766665555332222221 1100 012334433333333333 34667888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHHHHHhhee
Q psy8366 433 ASSSVVNFISTKTYINLTSWFG-LHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 433 ~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~ 474 (513)
......+++||.+.|.+.+.+| .+..+....++.+++.++..
T Consensus 423 i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~ 465 (477)
T PF11700_consen 423 ITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLF 465 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988 77778777777777776553
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=174.30 Aligned_cols=364 Identities=14% Similarity=0.143 Sum_probs=211.5
Q ss_pred ccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHH--HHHH-H
Q psy8366 51 FGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPF--FLGW-I 127 (513)
Q Consensus 51 ~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~--~~~~-~ 127 (513)
.+..-|..|...+ +..|+|.+++|.+.++..+...+.+|+.|.++||+|.||-++....+. ..+. +
T Consensus 23 ~gi~~pF~~iWL~-----------~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff 91 (412)
T PF01306_consen 23 WGIFLPFFPIWLT-----------QVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFF 91 (412)
T ss_dssp HHHHHHHHHHHHH-----------HHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHc-----------cccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 4444566666662 347999999999999999999999999999999999777654443322 2222 2
Q ss_pred HHHhch----hHH-HHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH---hHHHH
Q psy8366 128 LLYLAE----TVS-IIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT---DWRTT 199 (513)
Q Consensus 128 ~~~~~~----~~~-~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~wr~~ 199 (513)
...+.+ |++ ..+++-+..|+......|+..+++.++. ++.+.-.|-..+..++|..++..+++.+ +-+..
T Consensus 92 ~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~ 169 (412)
T PF01306_consen 92 IYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNINPNII 169 (412)
T ss_dssp HHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHH
Confidence 222322 222 2233333444444445555555554443 2223333444444455555544444433 66778
Q ss_pred HHhhhHHHHHHHHHHHhc-cCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcc
Q psy8366 200 VLISAIFPILTMIMIAFI-PESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRK 278 (513)
Q Consensus 200 f~~~~~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (513)
|++....+++..++.++. |+.++....++. .+.+++
T Consensus 170 fwi~s~~~~il~lll~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~ 206 (412)
T PF01306_consen 170 FWIASAAAIILLLLLLLLKPDVPPQAEVADA-------------------------------------------LGAKKD 206 (412)
T ss_dssp HHHHHHHHHHHHHHHHSS---SSSSS-SSTT-------------------------------------------SSS---
T ss_pred HHHHHHHHHHHHHHHHHcCCcCchhhhhhcc-------------------------------------------cccCCC
Confidence 887776666655544443 333221100000 000000
Q ss_pred hhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhc----CCCchh-HHHHHHHHHHHHHhhhHHHH
Q psy8366 279 SSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTF----GLPMKS-EWVLVLTGILSITGSFVSTI 353 (513)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~-~~~~~~~~~~~~~~~~~~g~ 353 (513)
+.+.++ ...+++.+..+...+... ...+.+....+..+.|+..+ +.+... |+..++..+.+++...+.++
T Consensus 207 ~~~~~~-~~~l~k~~~fw~~~l~v~----g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~ 281 (412)
T PF01306_consen 207 KVSLKD-VLSLFKMRNFWFFVLFVI----GVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPW 281 (412)
T ss_dssp ---HHH-HHHHTTSHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHH-HHHHhcchhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHH
Confidence 001122 223333333332222211 11112333333445554433 222233 67788888999999999999
Q ss_pred hhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHH-H
Q psy8366 354 TVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGIT-A 432 (513)
Q Consensus 354 l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~ 432 (513)
+.+|+|.|+.++++..++.+=.....+.. +++.....-.+.+.-..... ....-++++.+|++..++...+. +
T Consensus 282 li~rig~k~~Lllag~i~~iRi~~~~~~~-----~~~~i~~~klLH~~e~~l~l-va~fkYI~~~fd~rlsAt~y~v~~~ 355 (412)
T PF01306_consen 282 LINRIGAKNLLLLAGVIMAIRIIGSGFAT-----NPWVISLIKLLHALEFPLLL-VAAFKYITAHFDKRLSATLYLVGFQ 355 (412)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHT-------SHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHS-GGGHHHHHHHHHT
T ss_pred HHHhcChHhHHHHHHHHHHHHHHHHhhhc-----chHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHhHHHHHHHHHHH
Confidence 99999999999999999888888777765 55554444444444443332 23346889999999999999885 6
Q ss_pred HHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeEEcccCC
Q psy8366 433 ASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETE 481 (513)
Q Consensus 433 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (513)
...++|.++.+.+.|.+.|+.|++..+++.+.+.+...++..+.+++.+
T Consensus 356 ~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 356 FAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 7788999999999999999999999999988887777776665554433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=177.34 Aligned_cols=324 Identities=18% Similarity=0.251 Sum_probs=231.2
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhh----hcchhhH-HHHHhHHHHHHHHHHHhc-h-------hHHHHHHH
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLE----YIGRKRL-MILVGFPFFLGWILLYLA-E-------TVSIIMLG 141 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~-~~~~~~~~~~~~~~~~~~-~-------~~~~l~~~ 141 (513)
+.+|+++..+|.+..+..+..++..|+.|.++| |+||||. +++|.++.+++.+++... + ....+.+.
T Consensus 30 ~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~ 109 (428)
T PF13347_consen 30 DVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVF 109 (428)
T ss_pred HHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHH
Confidence 678999999999999999999999999999999 8998877 567888888888888766 4 23446777
Q ss_pred HHHhhccccccccchhhhhhccCC-ccccchhhhHhhHHHHHHHHHHHHHhhh----H-------hHHHHHHhhhHHHHH
Q psy8366 142 TVCMGLSVGCCEAPIISYIGEISE-PRMRGSLSLFAGAACNFGVFIIFLIYAL----T-------DWRTTVLISAIFPIL 209 (513)
Q Consensus 142 r~l~G~g~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~lG~~~~~~l~~~----~-------~wr~~f~~~~~~~~~ 209 (513)
.++..++.........++..|..+ +++|.+..+....+..+|.++...+... + +|++..++.+++.++
T Consensus 110 ~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v 189 (428)
T PF13347_consen 110 YILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLV 189 (428)
T ss_pred HHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHH
Confidence 888899999999999999999998 5789999999988888888654443221 1 699999998888887
Q ss_pred HHHH-HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhh
Q psy8366 210 TMIM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNY 288 (513)
Q Consensus 210 ~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (513)
..++ .+..+|.++ +.++ ++++.+..+.++.
T Consensus 190 ~~~i~~~~~ke~~~------~~~~-------------------------------------------~~~~~~~~~~~~~ 220 (428)
T PF13347_consen 190 FFLITFFFVKERSV------EVTE-------------------------------------------QEKKISLRDSLRS 220 (428)
T ss_pred Hhhhhhheeeeccc------cccc-------------------------------------------cccccccccchhh
Confidence 7664 455677211 0000 0000011112555
Q ss_pred hccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh-cCCCchhHHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHh
Q psy8366 289 LVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT-FGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWS 367 (513)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 367 (513)
+++++.++.......+...... ....+.+++.+. .|.+...+....+..+..+++.++.++++||+|+|+.+..+
T Consensus 221 ~~~nr~~~~l~~~~~~~~~~~~----~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~ 296 (428)
T PF13347_consen 221 LFRNRPFRILLLAFFLQWLAFA----LMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIG 296 (428)
T ss_pred hcccchHHHHHHHHHHHHhhhh----hhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhh
Confidence 6666555544444444333322 233334444442 44443346777788899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccch-------hhhhHHHHHHHHHHHHHHH
Q psy8366 368 TGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPL-------QVRGIASGITAASSSVVNF 440 (513)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~g~~~~~~~~g~~ 440 (513)
..+.+++.+.+.+... .+.+...+...+.+.+. .......+++.+|..+. +..|..+|+.++...++..
T Consensus 297 ~~~~~~~~~~~~~~~~---~~~~~~~i~~~l~gi~~-~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~ 372 (428)
T PF13347_consen 297 LLLAALGFLLLFFLGP---GSPWLVLILFILAGIGY-GAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQG 372 (428)
T ss_pred HHHHHHHHHHHHHHHh---hhHHHHHHHHHHhHhhh-cccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHH
Confidence 9998888887766541 23444444444444444 44457777888888763 3469999999999999999
Q ss_pred HHHHHhhhhhhccch
Q psy8366 441 ISTKTYINLTSWFGL 455 (513)
Q Consensus 441 ~~~~~~g~l~~~~g~ 455 (513)
+++.+.+.+.+..|+
T Consensus 373 la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 373 LAGAIVGLLLALVGY 387 (428)
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999988887664
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.4e-19 Score=173.45 Aligned_cols=321 Identities=14% Similarity=0.137 Sum_probs=191.7
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhc----chhhHH-HHHhHHHHHHHHHHH-h----ch--hHHHHHHHH
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYI----GRKRLM-ILVGFPFFLGWILLY-L----AE--TVSIIMLGT 142 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~----Grr~~~-~~~~~~~~~~~~~~~-~----~~--~~~~l~~~r 142 (513)
+.+|++..++|.+.+...+..++..++.|+++||. ||||.. +++.+...+..++.. . ++ ....+++..
T Consensus 37 ~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (448)
T PRK09848 37 DVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTY 116 (448)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHH
Confidence 67899999999999999999999999999999986 778764 556555554444432 1 11 233345566
Q ss_pred HHhhccccccccchhhhhhccCC-ccccchhhhHhhHHHH-----HHHHHHHHHhhhH------hHHHHHHhhhHHHHHH
Q psy8366 143 VCMGLSVGCCEAPIISYIGEISE-PRMRGSLSLFAGAACN-----FGVFIIFLIYALT------DWRTTVLISAIFPILT 210 (513)
Q Consensus 143 ~l~G~g~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~-----lG~~~~~~l~~~~------~wr~~f~~~~~~~~~~ 210 (513)
++.+++.+...+...++..+..+ +++|.+..+....+.+ +|..++|.+.... +|.....+.+++.++.
T Consensus 117 ~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~ 196 (448)
T PRK09848 117 MGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVL 196 (448)
T ss_pred HHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence 77888888888888888777765 4678887766654433 4444555554332 1221112223333322
Q ss_pred HH-HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhh
Q psy8366 211 MI-MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYL 289 (513)
Q Consensus 211 ~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (513)
.+ .....||+++. +.++. ..... ++.+
T Consensus 197 ~~~~~~~~~e~~~~---~~~~~------------------------------------------------~~~~~-~~~l 224 (448)
T PRK09848 197 YFICFKSTRENVVR---IVAQP------------------------------------------------SLKIS-LQTL 224 (448)
T ss_pred HHHHHcCcEeccCC---CccCC------------------------------------------------CHHHH-HHHH
Confidence 22 22334554210 00000 00111 3444
Q ss_pred ccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchhH-HHHHHHHHHHHHhhhHHHHhhcccCCchHHHHh
Q psy8366 290 VRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKSE-WVLVLTGILSITGSFVSTITVNKLGKRGMTLWS 367 (513)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 367 (513)
++++..........+..... .......+++++ ..|.+...+ +......++.+++.++.+++.||+++|+.+.++
T Consensus 225 ~~n~~f~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g 300 (448)
T PRK09848 225 KRNRPLFMLCIGALCVLIST----FAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIG 300 (448)
T ss_pred hCCchHHHHHHHHHHHHHHH----HHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 45544433333332222222 222234444444 355544443 333444566788899999999999999999998
Q ss_pred hHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchh-------hhhHHHHHHHHHHHHHHH
Q psy8366 368 TGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQ-------VRGIASGITAASSSVVNF 440 (513)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~g~~ 440 (513)
..+..++.+.+.+.. ..+.+.......+.+.+. ....+...++..|..|.+ .+|...|+.+....+|..
T Consensus 301 ~~~~~i~~~~~~~~~---~~~~~~~~~~~~l~g~G~-~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~a 376 (448)
T PRK09848 301 ALLGTCGYLLFFWVS---VWSLPVALVALAIASIGQ-GVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQA 376 (448)
T ss_pred HHHHHHHHHHHHHcC---chhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHH
Confidence 888777766555321 112232222222333332 333456667777776643 459999999999999999
Q ss_pred HHHHHhhhhhhccch
Q psy8366 441 ISTKTYINLTSWFGL 455 (513)
Q Consensus 441 ~~~~~~g~l~~~~g~ 455 (513)
+++.+.+.+.+..|+
T Consensus 377 ig~~i~g~~l~~~G~ 391 (448)
T PRK09848 377 IGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999988876664
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-18 Score=157.08 Aligned_cols=271 Identities=13% Similarity=0.120 Sum_probs=185.4
Q ss_pred HhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh----------------
Q psy8366 130 YLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL---------------- 193 (513)
Q Consensus 130 ~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~---------------- 193 (513)
+...+|+.++++-++.|.|.+...+..+.++++..+++++++.+++.+..+++|..++|+++..
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 3567899999999999999999999999999999999999999999999999999999998663
Q ss_pred ----HhHHHHHHhhhHHHHHHHHHHHhc--cCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccc
Q psy8366 194 ----TDWRTTVLISAIFPILTMIMIAFI--PESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYV 267 (513)
Q Consensus 194 ----~~wr~~f~~~~~~~~~~~~~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (513)
.+|+++|++.+.+.++..+.+.+. ||..+ +.++...
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~~~~-------------------------------- 126 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVARVS-------------------------------- 126 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------ccccccc--------------------------------
Confidence 269999997777766555544443 44211 0000000
Q ss_pred cccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh---cCCCchh-HHHHHHHHHH
Q psy8366 268 ADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT---FGLPMKS-EWVLVLTGIL 343 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~-~~~~~~~~~~ 343 (513)
+ +++. + .+..++. +......+..+........+..|.+.|+.+ .|+++.. +........+
T Consensus 127 ---~-~~~~-~-------~~~~~~~----~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~ 190 (310)
T TIGR01272 127 ---S-GDTT-Q-------KTSAFQF----THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGG 190 (310)
T ss_pred ---c-cccc-c-------hhhHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHH
Confidence 0 0000 0 0011111 112222333333333455666788888853 4777776 7888889999
Q ss_pred HHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhh
Q psy8366 344 SITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQV 423 (513)
Q Consensus 344 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 423 (513)
.++|+++.+++.||+++|+.+.++..+..++.+++... +.......+.+.+.+. ....|...+...+..| ++
T Consensus 191 ~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~------~~~~~~~~~~l~g~~~-s~i~P~~~s~a~~~~~-~~ 262 (310)
T TIGR01272 191 AMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT------HGYVAMWFVLALGLFN-SIMFPTIFSLALNALG-RH 262 (310)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhh-hh
Confidence 99999999999999999998887776666655333322 1222223333333333 3556777778888777 45
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHH
Q psy8366 424 RGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYT 463 (513)
Q Consensus 424 ~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 463 (513)
.+++.++. ....+|+++.|.+.|.+.|..|.+.++++..
T Consensus 263 ~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 263 TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 66777775 6778999999999999999999887776443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.4e-17 Score=146.68 Aligned_cols=346 Identities=14% Similarity=0.142 Sum_probs=234.8
Q ss_pred chhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhH-HHHHhHHHHHHHHHHHhchh---HHHHHHHHHHhhccccccccc
Q psy8366 80 SDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRL-MILVGFPFFLGWILLYLAET---VSIIMLGTVCMGLSVGCCEAP 155 (513)
Q Consensus 80 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~-~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~g~~~~~~~ 155 (513)
+.+..+...++..+..++.+|+.|.++|+.|+||. +-+...+..++.++..++++ ++..++...+..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 34567888999999999999999999999997766 55555555666666666654 445566788999999999999
Q ss_pred hhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHh----------------------hhHhHHHHHHhhhHHHHHHHH-
Q psy8366 156 IISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIY----------------------ALTDWRTTVLISAIFPILTMI- 212 (513)
Q Consensus 156 ~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~----------------------~~~~wr~~f~~~~~~~~~~~~- 212 (513)
-.+++.+..++++-++..++-.....+|..+.-+.. ....=|..+.+.++..++..+
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 999999999998888887776666666655433331 112567788888877766655
Q ss_pred HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccC
Q psy8366 213 MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRP 292 (513)
Q Consensus 213 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (513)
+++.+++.++- +.+... ......+++ +.+ ++..+++
T Consensus 216 m~~~v~~~~~~---~~~~~~---------------~l~~g~k~L-------------------------~~t-~k~i~~~ 251 (438)
T COG2270 216 MILNVHDAEKI---SSPPPT---------------ALRNGFKEL-------------------------KST-FKEIRGR 251 (438)
T ss_pred HHhcccccccc---cccchH---------------HHHHHHHHH-------------------------HHH-HHHHhcc
Confidence 66667765531 001100 000111111 011 4444444
Q ss_pred CchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHH
Q psy8366 293 EIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGI 370 (513)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 370 (513)
+....+++. .+...-+.+.+......+-. .+|++..+ ........+..++|+++.|++.||+|.|+++..+.++
T Consensus 252 ~~i~~FLiA----~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi 327 (438)
T COG2270 252 KNLVLFLIA----RFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVI 327 (438)
T ss_pred cchHHHHHH----HHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHH
Confidence 433333333 22333345555566666655 78988777 7777888999999999999999999999988888887
Q ss_pred HHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8366 371 NTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLT 450 (513)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 450 (513)
..+.++...... ......+...+.+... .+..+.+-++..+++|+++.++.+|+++..++..+++||.+.+.+.
T Consensus 328 ~~~~~~~~~~~~-----~~~~f~i~gll~g~s~-G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t 401 (438)
T COG2270 328 LSIAALYLIFLE-----GELDFWILGLLVGTSL-GGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVIT 401 (438)
T ss_pred HHHHHHHHHHcc-----ccHHHHHHHHHHHHhc-chHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHH
Confidence 777666555543 2332233323333333 4556777789999999999999999999999999999999999999
Q ss_pred hccc-hhHHHHHHHHHHHHHHhheeEEcccC
Q psy8366 451 SWFG-LHGTLFIYTLVSFLGFIYIYFYVPET 480 (513)
Q Consensus 451 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (513)
+.+| .+..+....++.+++.++. ...|..
T Consensus 402 ~iTg~~r~g~~~i~vll~iGl~~L-~~v~~~ 431 (438)
T COG2270 402 QITGSSRAGVLSIIVLLLIGLLLL-LRVKVP 431 (438)
T ss_pred HHhcchhhHHHHHHHHHHhhHhhE-EeecCC
Confidence 8877 4445555556666665544 344443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-16 Score=147.39 Aligned_cols=385 Identities=12% Similarity=0.090 Sum_probs=236.1
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhh-cchhhHHHHHhHHHHHHHHHHHhch--hHHHHHHHHHHhhccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEY-IGRKRLMILVGFPFFLGWILLYLAE--TVSIIMLGTVCMGLSVGC 151 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~g~~~ 151 (513)
+.+|++++++.-+.+.|..-.-+..+++|+++|| +|+|+++..|.++..+|.++.+.+. +...++++-.+.++|.|.
T Consensus 54 ~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl 133 (498)
T COG3104 54 DGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGL 133 (498)
T ss_pred ccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccc
Confidence 4477999999999999988888999999999999 5999999999999999999999984 788999999999999999
Q ss_pred cccchhhhhhccCCcc--ccchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHHHHHHhccCchhhhh
Q psy8366 152 CEAPIISYIGEISEPR--MRGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLISAIFPILTMIMIAFIPESPTWLV 225 (513)
Q Consensus 152 ~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~ 225 (513)
.=+...+++.|.+|++ +|-...+++.++.++|.+++|++..++ ||...|.+.++-....++..+..+..-....
T Consensus 134 ~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~ 213 (498)
T COG3104 134 FKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIG 213 (498)
T ss_pred ccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCC
Confidence 9999999999999843 367788999999999999988887665 9999999888877777665544432110000
Q ss_pred ----hcC-ChHHHHHHHHHhh----CC-----CchhhHHHHHHHHHHhhccccc--cccccccchhhcchhhhhhhhhhh
Q psy8366 226 ----SKG-RLEEAERSLRWVR----GW-----SKKHKVRVEFEQLVKDTNSATL--YVADSEYTTDQRKSSQLSKLLNYL 289 (513)
Q Consensus 226 ----~~~-~~~~~~~~~~~~~----~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 289 (513)
.+. +..+.......+- .. ...+.................. .....+..++++ +
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~------r----- 282 (498)
T COG3104 214 GVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERR------R----- 282 (498)
T ss_pred CCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHH------H-----
Confidence 000 0011110000000 00 0000000000000000000000 000000000000 0
Q ss_pred ccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh--cCCCchhHHHHHHHHHHHHHhhhHHHHhhcccCCc------
Q psy8366 290 VRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT--FGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKR------ 361 (513)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~------ 361 (513)
-...-++++...+++..+......+..|.....+. .|++....+..+...+.-++.+++..++..+.+++
T Consensus 283 --~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~ 360 (498)
T COG3104 283 --LLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPST 360 (498)
T ss_pred --HHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCc
Confidence 00001112222222222222334444454444332 34444457777777777788887777777764332
Q ss_pred -hHHHHhhHHHHHHHHHHHHHHHh-c---CCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHH
Q psy8366 362 -GMTLWSTGINTFFTLMLSICAMN-L---QWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSS 436 (513)
Q Consensus 362 -~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 436 (513)
.-+.++..+++.+++++...... . +..+...++...++.........|+..+++..+.|+...+..+|+......
T Consensus 361 ~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a 440 (498)
T COG3104 361 PIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVA 440 (498)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 22445666666666666665222 1 123445556666677777888899999999999999999999999888888
Q ss_pred HHHHHHHHHhhh------hhhccchhHHHHHHHHHHHHHHhh
Q psy8366 437 VVNFISTKTYIN------LTSWFGLHGTLFIYTLVSFLGFIY 472 (513)
Q Consensus 437 ~g~~~~~~~~g~------l~~~~g~~~~~~~~~~~~~~~~~~ 472 (513)
.+..++..+.+. ..+.......|..++...++....
T Consensus 441 ~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~ 482 (498)
T COG3104 441 AGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGIL 482 (498)
T ss_pred HHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 887777776663 223333445566666655554443
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-16 Score=152.88 Aligned_cols=300 Identities=18% Similarity=0.206 Sum_probs=209.5
Q ss_pred HHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHH
Q psy8366 36 ASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLM 115 (513)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~ 115 (513)
...+.++..+..++..++....+..+. +.|+++.++.|++.+.+=++..+...+..+..-|.-|-+.+
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiE------------rRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~I 165 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIE------------RRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWI 165 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhh------------hhcCCCCCcceeEeeecccchhhhhHhHHHhccccCcccee
Confidence 334445666777777788888888888 89999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHhch-----------------------------------------------h----HH-HHHHHHH
Q psy8366 116 ILVGFPFFLGWILLYLAE-----------------------------------------------T----VS-IIMLGTV 143 (513)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~-----------------------------------------------~----~~-~l~~~r~ 143 (513)
-+|.++.+++++++++-+ + ++ .++++.+
T Consensus 166 g~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~ 245 (735)
T KOG3626|consen 166 GIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQL 245 (735)
T ss_pred eechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHH
Confidence 999999999999998630 0 22 5677899
Q ss_pred HhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH-----------------------hHHHHH
Q psy8366 144 CMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT-----------------------DWRTTV 200 (513)
Q Consensus 144 l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-----------------------~wr~~f 200 (513)
+.|+|....++.+.+|+-|...+++-+...|+......+|+++|.+++.+. .|..-|
T Consensus 246 l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGF 325 (735)
T KOG3626|consen 246 LLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGF 325 (735)
T ss_pred HhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHH
Confidence 999999999999999999999999999999999999999999999887763 588889
Q ss_pred HhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchh
Q psy8366 201 LISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSS 280 (513)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (513)
++.+.+.++..+.++++|...+. ..+..+++ ..+..+..++. ........++-+
T Consensus 326 Li~g~~~~~~a~p~f~fPk~lp~---~~~~~~~~-~~~~~k~~~~~----------------------~~~~~~~~~~ik 379 (735)
T KOG3626|consen 326 LICGALLLFSAVPLFFFPKELPK---SQKRKRAR-DLHVLKTESGG----------------------AKSDKTFGKKIK 379 (735)
T ss_pred HHHHHHHHHHHHHHHhCcccCcc---ccccchhh-hhccccccccc----------------------ccCCcchhhhHH
Confidence 99999998888877888765321 11110000 00000000000 000000000100
Q ss_pred hhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHH-HHHHHHHHHhhhHHHHhhcc
Q psy8366 281 QLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVL-VLTGILSITGSFVSTITVNK 357 (513)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~-~~~~~~~~~~~~~~g~l~d~ 357 (513)
.+...++.+++++ +++...+........+....+|+|.|++ ++|.+... ..+. .+.-.+..+|.+++|++.+|
T Consensus 380 dfp~s~~~ll~N~----if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikk 455 (735)
T KOG3626|consen 380 DFPKSIKRLLSNP----IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKK 455 (735)
T ss_pred HHHHHHHHHhcCc----hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeee
Confidence 1111133344433 3444445555555567778899999997 68887765 3333 44445667888999999998
Q ss_pred cCC--chHHHHhhHHHHHHHHH
Q psy8366 358 LGK--RGMTLWSTGINTFFTLM 377 (513)
Q Consensus 358 ~g~--~~~~~~~~~~~~~~~~~ 377 (513)
+.. |....+..+...+.++.
T Consensus 456 fkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 456 FKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred ecccHHHHHHHHHHHHHHHHHH
Confidence 864 44544444444444443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-14 Score=131.02 Aligned_cols=325 Identities=13% Similarity=0.121 Sum_probs=214.2
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcc-----hhhHH-HHHhHHHHHHHHHHHhc-----h--------h-
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIG-----RKRLM-ILVGFPFFLGWILLYLA-----E--------T- 134 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G-----rr~~~-~~~~~~~~~~~~~~~~~-----~--------~- 134 (513)
.|++++....+.+.++..+... ..+.+|+.+|+.+ ||..+ ..|..+...+..+..++ . .
T Consensus 8 vEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~ 86 (403)
T PF03209_consen 8 VELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW 86 (403)
T ss_pred HHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence 5789999999999988887655 6899999999999 88774 45556656655555442 2 1
Q ss_pred H--HHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH-----hHHHHHHh--hhH
Q psy8366 135 V--SIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT-----DWRTTVLI--SAI 205 (513)
Q Consensus 135 ~--~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-----~wr~~f~~--~~~ 205 (513)
. ....+.-.+.|+|.+...+...++++|..|+++|+++.++......+|.+++..+.+.+ .-|..-.+ .++
T Consensus 87 ~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~ 166 (403)
T PF03209_consen 87 LGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVAL 166 (403)
T ss_pred HHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHH
Confidence 1 23445678899999999999999999999999999999999999999999988887655 22322222 222
Q ss_pred HHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhh
Q psy8366 206 FPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKL 285 (513)
Q Consensus 206 ~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (513)
+.++..++..+-.|.... +.. ..++++..++...
T Consensus 167 i~~~l~~ia~wg~E~r~~-----~~~-----------------------------------------~~~~~~~~~f~~a 200 (403)
T PF03209_consen 167 IALLLNLIALWGQEPRRS-----RRA-----------------------------------------AAAERPRPPFREA 200 (403)
T ss_pred HHHHHHHHHHHhcccCCc-----ccc-----------------------------------------cCCCCCCccHHHH
Confidence 222222233333343210 000 0000011112222
Q ss_pred hhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhc-ccCCchH
Q psy8366 286 LNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVN-KLGKRGM 363 (513)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~ 363 (513)
++.+..++..++++...++.....+.-...+.+|-- +.+|++..+ ..+....+.+.++|..+.|++.. |.++++.
T Consensus 201 ~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg---~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~ 277 (403)
T PF03209_consen 201 WRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGG---EVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRT 277 (403)
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchh---HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 555556666666666555555444332333333333 457888876 67777888888999888888776 6777787
Q ss_pred HHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHH
Q psy8366 364 TLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFIST 443 (513)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 443 (513)
..++.....+++.++...... .+.+.......+++.+.+.. .....+.+.++.++++.|..+|.....+.+...++.
T Consensus 278 a~~G~~~~~~~f~lii~a~~~--~~~~~~~~~~~l~G~g~G~f-~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~ 354 (403)
T PF03209_consen 278 AALGCLLGALAFALIILAGPL--GSPWLFRPGVFLLGLGNGLF-TVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGT 354 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHhhhHH-HHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 778888888877776665422 23454444555555544332 233336777788889999999999999999999999
Q ss_pred HHhhhhhhc
Q psy8366 444 KTYINLTSW 452 (513)
Q Consensus 444 ~~~g~l~~~ 452 (513)
.+.|.+.|.
T Consensus 355 ~~GG~~~D~ 363 (403)
T PF03209_consen 355 FLGGALRDL 363 (403)
T ss_pred HHHHHHHHH
Confidence 888887764
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.5e-17 Score=150.81 Aligned_cols=349 Identities=15% Similarity=0.135 Sum_probs=208.0
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcch-hhHHHHHhHHHHHHHHHH-Hh---ch-hHHHHHHHHHHhhcc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGR-KRLMILVGFPFFLGWILL-YL---AE-TVSIIMLGTVCMGLS 148 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~-~~---~~-~~~~l~~~r~l~G~g 148 (513)
-|.+.+.+..|++.++..++.+++++..|+...|.|. |++++.|.++..+|+++- +. .+ .-+.++++|++.|+|
T Consensus 64 lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg 143 (488)
T KOG2325|consen 64 LDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVG 143 (488)
T ss_pred cCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcC
Confidence 4678888999999999999999999999999999997 999999999999999988 33 23 678899999999999
Q ss_pred ccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH-----------------hHHHHHHhhhHHHHHHH
Q psy8366 149 VGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT-----------------DWRTTVLISAIFPILTM 211 (513)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-----------------~wr~~f~~~~~~~~~~~ 211 (513)
.| .....-+|+++....++|.++++....+..+|..+||.+...+ -+..+-|+.+++.++.+
T Consensus 144 ~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~ 222 (488)
T KOG2325|consen 144 VG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYI 222 (488)
T ss_pred cc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHH
Confidence 87 6677789999988899999999999998888888888876554 13345677777777776
Q ss_pred H-HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhc
Q psy8366 212 I-MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLV 290 (513)
Q Consensus 212 ~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (513)
+ +.++++|.++....+..+.+ + +++.+ .+...
T Consensus 223 v~i~~~f~E~~~~~~~~~~~~~-~---------------------------------------~~~~~-------~~~~~ 255 (488)
T KOG2325|consen 223 VIILFFFKEVYRGIIDKKKRSV-E---------------------------------------EEKSD-------IEKVK 255 (488)
T ss_pred HHHHhheeecccCccccccccc-h---------------------------------------hhccc-------hhhhc
Confidence 6 45557776542111110000 0 00000 11111
Q ss_pred cCCchhHHHHHHHHHHHHHhhchhc-hhhhHHHHHHhcCCCchh-----HHHHHHHHHHHHHhhhHHHHhh-cccCCchH
Q psy8366 291 RPEIVRPFIMIMILFFITIIASLQP-MRPFLVEIFRTFGLPMKS-----EWVLVLTGILSITGSFVSTITV-NKLGKRGM 363 (513)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~g~l~-d~~g~~~~ 363 (513)
+++.-+...+.+....+........ -..+.+.....++...+. +...++.++....-.+...... .++.+|+.
T Consensus 256 ~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~ 335 (488)
T KOG2325|consen 256 KPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRI 335 (488)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhcccee
Confidence 2222233233332222222222222 222223333345554443 2333333333333333333333 33344555
Q ss_pred HHHhhHHHHHHHHHHHHHHHhcC-C------------------------CchhhHHHHHHHHHHHhcc-ccchhhhhhcc
Q psy8366 364 TLWSTGINTFFTLMLSICAMNLQ-W------------------------PGWIPLTIFCTCFWVSGYG-MLPLPWMLLSE 417 (513)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~-~------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 417 (513)
+..++.....+..+......... + .+...........++.+.. ......+..+|
T Consensus 336 ~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySk 415 (488)
T KOG2325|consen 336 ILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSK 415 (488)
T ss_pred eeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHH
Confidence 54443333333222221110000 0 0011111111111111111 12233467888
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHh
Q psy8366 418 VFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFI 471 (513)
Q Consensus 418 ~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 471 (513)
...++++++..|+.......+..++|.+........|++..+.+..+..++...
T Consensus 416 iLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~ 469 (488)
T KOG2325|consen 416 ILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAA 469 (488)
T ss_pred HhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999988888888887766665554444433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.3e-16 Score=152.81 Aligned_cols=167 Identities=14% Similarity=0.155 Sum_probs=128.4
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHH---HHhchhHHHHHHHHHHhhccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWIL---LYLAETVSIIMLGTVCMGLSVGC 151 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~g~~~ 151 (513)
+++|.+..+.++..+...++..++.++.|+++||+|||+++.++.++..++.+. ...+++...++++|++.|++.+.
T Consensus 279 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 358 (490)
T PRK10642 279 HNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNC 358 (490)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 567888888888888899999999999999999999999988887654443332 22345677888899999988777
Q ss_pred cccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH-----hHHHHHHhhhHHHHHHHHHHHhccCchhhhhh
Q psy8366 152 CEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT-----DWRTTVLISAIFPILTMIMIAFIPESPTWLVS 226 (513)
Q Consensus 152 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~ 226 (513)
.......++.|.+|++.|++..++......++..+++.+..++ +|+.++++..+++++..+..+++||+|+|+.+
T Consensus 359 ~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~ 438 (490)
T PRK10642 359 FTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLK 438 (490)
T ss_pred HHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 7777788889999999999988874333344445555554443 57878777777777777777778999999775
Q ss_pred c-----CChHHHHHHHHHhh
Q psy8366 227 K-----GRLEEAERSLRWVR 241 (513)
Q Consensus 227 ~-----~~~~~~~~~~~~~~ 241 (513)
+ ++.+++++.+.+++
T Consensus 439 ~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 439 GATPAASDIQEAKEILVEHY 458 (490)
T ss_pred CccccccchhhHHHHhhccc
Confidence 5 78888888888776
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-17 Score=163.88 Aligned_cols=369 Identities=17% Similarity=0.165 Sum_probs=3.0
Q ss_pred HhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHH
Q psy8366 44 LFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFF 123 (513)
Q Consensus 44 ~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 123 (513)
.+..++..++....++.++ +.|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-+|.++.+
T Consensus 12 ~~~q~~~~g~~~~~lttiE------------rRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~ 79 (539)
T PF03137_consen 12 GLFQMMVSGYVNSSLTTIE------------RRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMG 79 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH------------HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHH
Confidence 3334666777778888888 9999999999999999999999999999999999888888999999999
Q ss_pred HHHHHHHhch--------------------------------------------------hHHHHHHHHHHhhccccccc
Q psy8366 124 LGWILLYLAE--------------------------------------------------TVSIIMLGTVCMGLSVGCCE 153 (513)
Q Consensus 124 ~~~~~~~~~~--------------------------------------------------~~~~l~~~r~l~G~g~~~~~ 153 (513)
+|++++++-+ -+..++++.++.|+|....+
T Consensus 80 ~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~ 159 (539)
T PF03137_consen 80 LGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLY 159 (539)
T ss_dssp ------------------------------------------------------------------------SSS-----
T ss_pred HHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCc
Confidence 9999886520 03467889999999999999
Q ss_pred cchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH--------------------------hHHHHHHhhhHHH
Q psy8366 154 APIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT--------------------------DWRTTVLISAIFP 207 (513)
Q Consensus 154 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~--------------------------~wr~~f~~~~~~~ 207 (513)
+.+.+|+-|..++++-+...|+..+...+|+.+|.++++.. .|..-|++.+++.
T Consensus 160 tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~ 239 (539)
T PF03137_consen 160 TLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILL 239 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988876542 3666777777777
Q ss_pred HHHHHHHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhh--
Q psy8366 208 ILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKL-- 285 (513)
Q Consensus 208 ~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 285 (513)
++..+.++++|+..+.. ++..++.+....+... .+.+.. .+.++.+......+++
T Consensus 240 ~l~aipl~~FPk~lp~~--~~~~~~~~~~~~~~~~----~~~~~~-----------------~~~~~~~~~~~~~~df~~ 296 (539)
T PF03137_consen 240 FLSAIPLFFFPKKLPGT--SERQEEKESSERKEED----SDKDSF-----------------KDPKSKKSFGKSIKDFPK 296 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHcCCccCCCc--ccccchhhhhhcchhh----hhhhcc-----------------cccccccchhhhhhhHHH
Confidence 77777566666542211 0000000000000000 000000 0000000000011111
Q ss_pred -hhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHH-HHHHHHHHHhhhHHHHhhcccCC-
Q psy8366 286 -LNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVL-VLTGILSITGSFVSTITVNKLGK- 360 (513)
Q Consensus 286 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~-~~~~~~~~~~~~~~g~l~d~~g~- 360 (513)
.+.+.+ .+.++...+...........+.+|.|.|++ +++.++.. ..+. .+.-.+..+|.+++|++.+|++.
T Consensus 297 ~l~~Ll~----Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~ 372 (539)
T PF03137_consen 297 ALKRLLT----NPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLS 372 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhc----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCc
Confidence 223333 344444445555555556777899999997 57877665 4333 33444677899999999998863
Q ss_pred -chHHHHhhHHHHHHHHH---HHHHHHh---------cC------------------------------------CCchh
Q psy8366 361 -RGMTLWSTGINTFFTLM---LSICAMN---------LQ------------------------------------WPGWI 391 (513)
Q Consensus 361 -~~~~~~~~~~~~~~~~~---~~~~~~~---------~~------------------------------------~~~~~ 391 (513)
|+.+.+..+...+..+. +.+.... .. ...+.
T Consensus 373 ~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~ 452 (539)
T PF03137_consen 373 ARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLI 452 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccH
Confidence 44444444444443333 1111000 00 00111
Q ss_pred -hHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHH-HHHHHHHHHhhhhhhc
Q psy8366 392 -PLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSS-VVNFISTKTYINLTSW 452 (513)
Q Consensus 392 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~~g~l~~~ 452 (513)
.++..++..+..+....|.. ...-..+|+++|+.|.|+...+.+ +|.+-+|.++|.++|.
T Consensus 453 ~Fl~~~~~~~~~~~~~~~p~~-~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 453 PFLILLFILSFFTFMSQVPST-LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcccchh-eeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 12222222222223333433 556678899999999999987765 6778899999999986
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-13 Score=132.62 Aligned_cols=310 Identities=19% Similarity=0.229 Sum_probs=202.6
Q ss_pred HHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccc--cccccchhhhhhccCCcc
Q psy8366 90 ILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSV--GCCEAPIISYIGEISEPR 167 (513)
Q Consensus 90 ~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~--~~~~~~~~~~~~~~~~~~ 167 (513)
...+...+.++..|.++||+|||..+.+..+...+..++..+.. +| +++ +.|+.. +.......++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YW-FFL---LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HH-Hhh---hcccccchhhhhhhhhhheeeccchh
Confidence 34567778999999999999999999999999999888888776 33 333 444432 346667788999999999
Q ss_pred ccchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHHH-HHHhccCchhhhhhcCChHHHHHHHHHhhC
Q psy8366 168 MRGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLISAIFPILTMI-MIAFIPESPTWLVSKGRLEEAERSLRWVRG 242 (513)
Q Consensus 168 ~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~ 242 (513)
+|....++....+..+..++|.++.+. |.-..|.+..+..++..+ ..+++||+-.. +.+.+ +. ......
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~---~~~~~-~~--~~~~~~ 218 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQE---KERSD-AT--LRELTP 218 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCc---ccccc-cc--ccccCC
Confidence 999999999997777777777776665 777788888888877777 67778997431 11110 00 000000
Q ss_pred CCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHH---Hhhchh-chhh
Q psy8366 243 WSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFIT---IIASLQ-PMRP 318 (513)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~ 318 (513)
..... .. ..+..+...+.+..+..+......... ...+.. ....
T Consensus 219 --~~~~~--------------------------~~----~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~ 266 (463)
T KOG2816|consen 219 --GSLDS--------------------------SH----VADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLL 266 (463)
T ss_pred --Ccccc--------------------------hh----hhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEE
Confidence 00000 00 000022222222222222222222221 111111 1112
Q ss_pred hHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHH-HhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHH
Q psy8366 319 FLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVST-ITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIF 396 (513)
Q Consensus 319 ~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g-~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (513)
|+. ...+++... +...+..+....++.++.. .+...++.|+....|...-.+....+.+.. ..|......
T Consensus 267 yl~---~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~-----~~w~~~~~~ 338 (463)
T KOG2816|consen 267 YLK---AKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT-----ETWMMFAAG 338 (463)
T ss_pred EEe---eecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc-----cchhhhHHH
Confidence 222 357788777 6677777788888887666 777788888888888888888888777765 455433333
Q ss_pred HHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy8366 397 CTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSW 452 (513)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 452 (513)
..... .....+...+.++...+++++|.+.++...+..+.+.++|.+.+.+...
T Consensus 339 v~~~~--~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 339 VVVAL--AGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred HHHHh--hcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 33222 2345677778888899999999999999999999999999999887654
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-14 Score=118.12 Aligned_cols=132 Identities=21% Similarity=0.341 Sum_probs=116.0
Q ss_pred HHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCcc
Q psy8366 88 GSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPR 167 (513)
Q Consensus 88 ~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~ 167 (513)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHHHHHH-hccC
Q psy8366 168 MRGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLISAIFPILTMIMIA-FIPE 219 (513)
Q Consensus 168 ~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~-~~~e 219 (513)
+|++..++......+|..+++.+...+ +|++.+++.+++.++..+..+ +.||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999988888776655 899999998888777766443 3454
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-12 Score=127.30 Aligned_cols=178 Identities=12% Similarity=0.067 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHH
Q psy8366 298 FIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTL 376 (513)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 376 (513)
......+.+.........+.+..|.+.+++|.+..+ ++..+...++..++.++.|++.||+|||+.+..+..+..++.+
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~ 88 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAST 88 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 333333444444443445555666666788988877 8889999999999999999999999999999999888888877
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh-----
Q psy8366 377 MLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTS----- 451 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~----- 451 (513)
+..+.. +.+...+.-.+.+.+. .+..+....++.|.+|+++|+++.|+.+....+|..+++.+.+.+.+
T Consensus 89 ~~~~~~-----~~~~l~~~r~l~G~~~-~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (412)
T TIGR02332 89 ATMFAT-----GPESLYLLRILVGIAE-AGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM 162 (412)
T ss_pred HHHHhc-----CHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 776643 3333333333333333 34456666788999999999999999999999999999999988764
Q ss_pred -ccchhHHHHHHHHHHHHHHhheeEEcccCC
Q psy8366 452 -WFGLHGTLFIYTLVSFLGFIYIYFYVPETE 481 (513)
Q Consensus 452 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (513)
..||+..|.+.++..++..++.+++.+|++
T Consensus 163 ~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 163 ALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred CccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 368999999988777766555555666654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.4e-13 Score=131.80 Aligned_cols=161 Identities=13% Similarity=0.150 Sum_probs=124.2
Q ss_pred hhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchh
Q psy8366 313 LQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWI 391 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
......+.|.+.++.|++..+ ++..+...++..+++++.|++.||+|||+.+.++..+.+++.++..... +.+.
T Consensus 39 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~~ 113 (434)
T PRK11663 39 RKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS-----SLWA 113 (434)
T ss_pred hhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh-----HHHH
Confidence 345567788888889998877 8888999999999999999999999999999999888888877666543 3333
Q ss_pred hHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHh
Q psy8366 392 PLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFI 471 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 471 (513)
..+...+.+.+.+ ...+....++.|.+|+++|++++|+.+....+|+.++|.+.+.+.+..||+..|.+.+++.++..+
T Consensus 114 l~~~~~l~g~~~g-~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~ 192 (434)
T PRK11663 114 FALLWVLNAFFQG-WGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGL 192 (434)
T ss_pred HHHHHHHHHHHHH-ccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 3333333333332 334666688899999999999999999999999999999999999999999999888776655443
Q ss_pred heeEEccc
Q psy8366 472 YIYFYVPE 479 (513)
Q Consensus 472 ~~~~~~~~ 479 (513)
+..+..++
T Consensus 193 ~~~~~~~~ 200 (434)
T PRK11663 193 FLCWRLRD 200 (434)
T ss_pred HHHHHcCC
Confidence 33333343
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-12 Score=115.06 Aligned_cols=249 Identities=10% Similarity=0.031 Sum_probs=158.1
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhcccccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEA 154 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~ 154 (513)
+++|.+..|++.+....+...++..++.|.++||+|||+.-++.+++.+++++ +-..++++.++++|++.|++.+..+.
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS 140 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFS 140 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999986 55668899999999999999999998
Q ss_pred chhhhh-hccC----CccccchhhhHhh-HHHHHHHHHHHHHhhhH------hHHHHHHhhhHHHHHHHHHHH-hccCch
Q psy8366 155 PIISYI-GEIS----EPRMRGSLSLFAG-AACNFGVFIIFLIYALT------DWRTTVLISAIFPILTMIMIA-FIPESP 221 (513)
Q Consensus 155 ~~~~~~-~~~~----~~~~r~~~~~~~~-~~~~lG~~~~~~l~~~~------~wr~~f~~~~~~~~~~~~~~~-~~~e~p 221 (513)
+-.+++ .|.- |++..+...+... ...++-.+.++++++.. |-..+|....++.++..+++. ..+|.+
T Consensus 141 ~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENy 220 (354)
T PF05631_consen 141 AFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENY 220 (354)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccC
Confidence 888775 3432 2222233333232 22333344455555443 346788888777777766443 345542
Q ss_pred hhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHH
Q psy8366 222 TWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMI 301 (513)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (513)
.. ..+..+..+. ...-++.+.+. ++.+..
T Consensus 221 g~---~~~~~~~~~~---------------------------------------------~~~a~~~i~~d---~ril~L 249 (354)
T PF05631_consen 221 GD---TSSSSSLSGS---------------------------------------------FREAWRAILSD---PRILLL 249 (354)
T ss_pred CC---cccccchHHH---------------------------------------------HHHHHHHHHcC---chhHHH
Confidence 10 0000000000 00002233322 234444
Q ss_pred HHHHHHHHhhchhchhhhHHHHHHhcCCCchhHHHHHHHHHHHHHhhhHHHHhhc-ccCCchHHHHhhHHHHHHHH
Q psy8366 302 MILFFITIIASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVN-KLGKRGMTLWSTGINTFFTL 376 (513)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~ 376 (513)
...........+..+..|.|.+- ..+-+...|+++..+..+.++|+.+..++.. +......+...+.+.++++.
T Consensus 250 G~~qslFE~smy~FVflWtPaL~-~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~aa~~l~ 324 (354)
T PF05631_consen 250 GLIQSLFEGSMYLFVFLWTPALD-PDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAVAAVSLA 324 (354)
T ss_pred HHHHHHHHHHHHHheeeeeceec-CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 55555555555666667777654 2121222389999999999999988876554 43334444444444444433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-13 Score=130.90 Aligned_cols=162 Identities=19% Similarity=0.236 Sum_probs=123.5
Q ss_pred hhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchh
Q psy8366 313 LQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWI 391 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
......+.|.+.+++|.+... ++......++.+++.++.|+++||+|||+.+..+..+..++.+++.... +.+.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 107 (398)
T TIGR00895 33 LAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALAT-----NVTQ 107 (398)
T ss_pred HHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcc-----chHH
Confidence 445556778777888888776 7888888899999999999999999999999988888777766655432 3333
Q ss_pred hHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHh
Q psy8366 392 PLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFI 471 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 471 (513)
..+...+.+ .......+...+++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..||+..+.+.+++.++..+
T Consensus 108 ~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 186 (398)
T TIGR00895 108 LLILRFLAG-LGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLL 186 (398)
T ss_pred HHHHHHHHh-cccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHH
Confidence 333333333 3323445677789999999999999999999999999999999999999999999888887656555555
Q ss_pred heeEEcccC
Q psy8366 472 YIYFYVPET 480 (513)
Q Consensus 472 ~~~~~~~~~ 480 (513)
+.....++.
T Consensus 187 ~~~~~~~~~ 195 (398)
T TIGR00895 187 LLMRFLPES 195 (398)
T ss_pred HHHHhCCCC
Confidence 444445544
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.6e-13 Score=128.26 Aligned_cols=342 Identities=18% Similarity=0.173 Sum_probs=199.9
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcc----hhhH-HHHHhHHHHHHHHHHHhc----hhHHHHHHHHHHh
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIG----RKRL-MILVGFPFFLGWILLYLA----ETVSIIMLGTVCM 145 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G----rr~~-~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~ 145 (513)
+++|+++++.....+...+... .-++.|.++|.+- |||. ++++.++..++.+..+.. .+.....+.-++.
T Consensus 18 ~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la 96 (433)
T PF03092_consen 18 DDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLA 96 (433)
T ss_pred HHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHH
Confidence 8999999999999998888776 4667899999763 5555 566666665555555543 3567777788889
Q ss_pred hccccccccchhhhhhccCC--ccccchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHHHHHHh-cc
Q psy8366 146 GLSVGCCEAPIISYIGEISE--PRMRGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLISAIFPILTMIMIAF-IP 218 (513)
Q Consensus 146 G~g~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~-~~ 218 (513)
.+|.+....++.+++.|... ++.||...+.......+|.+++..+++.+ ++|+.|.+.+++.++..+..++ .+
T Consensus 97 ~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 97 SFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred HHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999874 33377788888777788888777666554 8888998888887777664444 44
Q ss_pred CchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHH
Q psy8366 219 ESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPF 298 (513)
Q Consensus 219 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (513)
|.++ .+.++.... .+. ..+......+ +....+++.+.++..+++.
T Consensus 177 e~~~-----~~~~~~~~~----~~~-~~~~~~~~~~-------------------------~~~~~l~~~~~~~~i~~~~ 221 (433)
T PF03092_consen 177 ERKV-----RPADEVFSF----GKE-EVPCLFGSFR-------------------------EQLSELWRALQQRAIWQPI 221 (433)
T ss_pred hccc-----cccchhhcc----ccc-ccchhhHHHH-------------------------HHHHHHHHHHhhhHHHHHH
Confidence 4211 000000000 000 0000000000 0012223344443333333
Q ss_pred HHHHHHHHHHHhhchhc-hhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHH
Q psy8366 299 IMIMILFFITIIASLQP-MRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTL 376 (513)
Q Consensus 299 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 376 (513)
....++...... .... ..++........++++.. +....+..++.++|..+......+..-|+++....++..+..+
T Consensus 222 ~~~~~~~~~~~~-~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l 300 (433)
T PF03092_consen 222 LFFIFFFNLPPS-ISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASL 300 (433)
T ss_pred HHHHHHHHhccC-CCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 311111111111 1111 111222111112255544 5555667777777877777776667767776655554443322
Q ss_pred HHHHHH--Hh--c-CCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy8366 377 MLSICA--MN--L-QWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTS 451 (513)
Q Consensus 377 ~~~~~~--~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 451 (513)
.-.... ++ . -.+.+..+.--.+........+.|.. ..++|+.|+..-|+.+|+..++.++|..++..+...+.+
T Consensus 301 ~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~ 379 (433)
T PF03092_consen 301 FDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLME 379 (433)
T ss_pred ccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211110 00 0 01123223333333344434445554 788999999999999999999999999999999888877
Q ss_pred ccc
Q psy8366 452 WFG 454 (513)
Q Consensus 452 ~~g 454 (513)
..|
T Consensus 380 ~~~ 382 (433)
T PF03092_consen 380 LFG 382 (433)
T ss_pred HcC
Confidence 665
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-13 Score=137.14 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=121.9
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhcc
Q psy8366 84 SSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEI 163 (513)
Q Consensus 84 ~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~ 163 (513)
..+...+..++..++.++.|+++||+|||++++++.++.++++++.+++++...+++.+++.|++.++.++...++++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677789999999999999999999999999999999999999999888888999999998888899999999999
Q ss_pred CCccccchhhhHhhHHHHHHHHHHHHHhhhH---hHHHHHHhhhHHHHHHHHHHHhccCch
Q psy8366 164 SEPRMRGSLSLFAGAACNFGVFIIFLIYALT---DWRTTVLISAIFPILTMIMIAFIPESP 221 (513)
Q Consensus 164 ~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~wr~~f~~~~~~~~~~~~~~~~~~e~p 221 (513)
+|.++|++++|+..+...+|.+++|.++..+ +...+|++.+++.++..++.+++||+.
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999987654 456678888887777777777789873
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.8e-13 Score=128.16 Aligned_cols=160 Identities=13% Similarity=0.096 Sum_probs=125.7
Q ss_pred hhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHH
Q psy8366 316 MRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLT 394 (513)
Q Consensus 316 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (513)
+....|.+.++.|.+... ++......++..++.++.|+++||+|||+.+..+..+..++..++.... +.+...+
T Consensus 13 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 87 (399)
T TIGR00893 13 LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG-----AYVSLYI 87 (399)
T ss_pred hhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc-----CHHHHHH
Confidence 345556666788888776 8899999999999999999999999999999988888887777766543 3343333
Q ss_pred HHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhhee
Q psy8366 395 IFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 474 (513)
...+.+.+. ....+....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+..+|+..+.+.+++.++..++..
T Consensus 88 ~~~l~g~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (399)
T TIGR00893 88 LRVLLGAAE-APFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWL 166 (399)
T ss_pred HHHHHHHHH-HhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh
Confidence 333433333 3455667789999999999999999999999999999999999999999999999888877776666555
Q ss_pred EEcccCC
Q psy8366 475 FYVPETE 481 (513)
Q Consensus 475 ~~~~~~~ 481 (513)
+..++++
T Consensus 167 ~~~~~~~ 173 (399)
T TIGR00893 167 KFIPDPP 173 (399)
T ss_pred heecCCC
Confidence 5555443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-12 Score=125.48 Aligned_cols=158 Identities=9% Similarity=0.053 Sum_probs=123.0
Q ss_pred hhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHH
Q psy8366 316 MRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLT 394 (513)
Q Consensus 316 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (513)
.....|.+.+++|.+..+ ++..+...++..++.+..|++.||+|||+.+..+..+..++.+...... +.+..++
T Consensus 28 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~ 102 (390)
T PRK03545 28 PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAW-----NFTVLLI 102 (390)
T ss_pred HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhc-----cHHHHHH
Confidence 334567777889998887 8888888889999999999999999999999999888888877766543 3333333
Q ss_pred HHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhhee
Q psy8366 395 IFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 474 (513)
.-.+.+.+. ....+...+++.|.+|+++|+.+.|+......+|..++|.+.+.+.+..||+..|++.++++++..++..
T Consensus 103 ~r~~~G~~~-~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~ 181 (390)
T PRK03545 103 SRIGIAFAH-AIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLI 181 (390)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 333333222 3344666688899999999999999999999999999999999999999999999998887776655444
Q ss_pred EEccc
Q psy8366 475 FYVPE 479 (513)
Q Consensus 475 ~~~~~ 479 (513)
...|+
T Consensus 182 ~~~~~ 186 (390)
T PRK03545 182 KLLPL 186 (390)
T ss_pred HhCCC
Confidence 44444
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-13 Score=134.60 Aligned_cols=145 Identities=14% Similarity=0.140 Sum_probs=119.6
Q ss_pred CcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccc
Q psy8366 76 DLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAP 155 (513)
Q Consensus 76 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~ 155 (513)
+.+.+..+.|++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+.
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778899999999999999999999999999999999999999999999999999999999999999998888788
Q ss_pred hhhhhhccCCccccchhhhH-hhHHHHHHHHHHHHHhhh----HhHHHHHHhhhHHHHHHHHH-HHhccCc
Q psy8366 156 IISYIGEISEPRMRGSLSLF-AGAACNFGVFIIFLIYAL----TDWRTTVLISAIFPILTMIM-IAFIPES 220 (513)
Q Consensus 156 ~~~~~~~~~~~~~r~~~~~~-~~~~~~lG~~~~~~l~~~----~~wr~~f~~~~~~~~~~~~~-~~~~~e~ 220 (513)
...++.|.+|++.|+...+. ++....+|..+++.+.+. .||+..|.+.+++.++..++ ...++++
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88899999999999887655 455566666666655544 49999999988887766654 4444443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=124.97 Aligned_cols=163 Identities=8% Similarity=0.071 Sum_probs=121.3
Q ss_pred hhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCC
Q psy8366 310 IASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQW 387 (513)
Q Consensus 310 ~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (513)
..+......+++.+++ ++|++..+ ++..+...++..+++++.|+++||+|||+.+..+..+..++.+.+.+..
T Consensus 20 ~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~----- 94 (395)
T PRK10054 20 TIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN----- 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh-----
Confidence 3334555667777775 68998877 8888888899999999999999999999999888887777776665543
Q ss_pred CchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHH
Q psy8366 388 PGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSF 467 (513)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 467 (513)
+.+..++...+.+... ....+...++..|..|+++|+++.|+.+...++|..++|.+.+.+.+ .||+..|.+.+++.+
T Consensus 95 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~ 172 (395)
T PRK10054 95 NVTLVVLFFALINCAY-SVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSA 172 (395)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHH
Confidence 3333333222332222 23355566788999999999999999999999999999999998875 689999988877777
Q ss_pred HHHhheeEEccc
Q psy8366 468 LGFIYIYFYVPE 479 (513)
Q Consensus 468 ~~~~~~~~~~~~ 479 (513)
+..++..+..++
T Consensus 173 i~~i~~~~~~~~ 184 (395)
T PRK10054 173 FPLVFIQIWVQR 184 (395)
T ss_pred HHHHHHHHHHhc
Confidence 665544433443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-13 Score=124.25 Aligned_cols=178 Identities=10% Similarity=0.152 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHH
Q psy8366 297 PFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFT 375 (513)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 375 (513)
+.++...+........-..+..-.|.+.++.+++..+ +.+.+...+..-++.++.|.++||.++|+.+..+++++++..
T Consensus 29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~n 108 (448)
T COG2271 29 QIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVN 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHH
Confidence 3344444444333333344455567777788899888 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHh--hhhhhcc
Q psy8366 376 LMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTY--INLTSWF 453 (513)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~--g~l~~~~ 453 (513)
+++.+.. +.+...++..+-+.+-+.+ .|.+...+...+|+++||+..++-|+..++|+.+.|.+. +.+.++.
T Consensus 109 il~Gfs~-----s~~~~~~l~~lng~fQg~G-wpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~ 182 (448)
T COG2271 109 ILFGFSP-----SLFLFAVLWVLNGWFQGMG-WPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG 182 (448)
T ss_pred HHHhhhh-----HHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc
Confidence 9988865 3444444455555555555 455668889999999999999999999999999999999 8999988
Q ss_pred chhHHHHHHHHHHHHHHhheeEEcccC
Q psy8366 454 GLHGTLFIYTLVSFLGFIYIYFYVPET 480 (513)
Q Consensus 454 g~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (513)
+|+..|++-++++++..++.++..+++
T Consensus 183 ~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 183 GWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999998888777666555544
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-12 Score=125.94 Aligned_cols=164 Identities=16% Similarity=0.154 Sum_probs=126.1
Q ss_pred chhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCch
Q psy8366 312 SLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGW 390 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (513)
+........|.+.++.|.+... ++..+...++..++.++.|++.||+|||+.+..+..+..++.+.+.... +.+
T Consensus 20 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~ 94 (385)
T TIGR00710 20 GIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN-----NIE 94 (385)
T ss_pred HHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc-----cHH
Confidence 3445556677777888988776 8888999999999999999999999999999998888888777666543 333
Q ss_pred hhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHH
Q psy8366 391 IPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGF 470 (513)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 470 (513)
...+...+.+ .......+...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..||+..+++.+++.++..
T Consensus 95 ~~~~~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 173 (385)
T TIGR00710 95 TLLVLRFVQA-FGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLS 173 (385)
T ss_pred HHHHHHHHHH-cchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 3333322332 222334466668899999999999999999999999999999999999998999999888887777666
Q ss_pred hheeEEcccCC
Q psy8366 471 IYIYFYVPETE 481 (513)
Q Consensus 471 ~~~~~~~~~~~ 481 (513)
++..+..||++
T Consensus 174 ~~~~~~~~~~~ 184 (385)
T TIGR00710 174 ALIFFILPETL 184 (385)
T ss_pred HHHHHhCCCCC
Confidence 55544555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-12 Score=117.27 Aligned_cols=173 Identities=13% Similarity=0.133 Sum_probs=143.7
Q ss_pred HHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHH
Q psy8366 300 MIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLML 378 (513)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 378 (513)
+...+..+.....-+.....+|.+-++++.+... |...+.+.++..++.++...+.||+.||+.+.....+..++.++.
T Consensus 16 ~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~ 95 (394)
T COG2814 16 LALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLS 95 (394)
T ss_pred HHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHH
Confidence 3333444444444566677888888999999887 899999999999999999999999999999999999999998888
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHH
Q psy8366 379 SICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGT 458 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 458 (513)
.+.+ +.+..++.=.+.+... ..+.++..+...++.|+++|+++.++..+...++..+|.+++.++-|..||+.+
T Consensus 96 alAp-----~f~~Ll~aR~~~g~a~-G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~ 169 (394)
T COG2814 96 ALAP-----SFAVLLLARALAGLAH-GVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRAT 169 (394)
T ss_pred HHhc-----cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHH
Confidence 8865 4444444333443333 456788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhheeEEcc
Q psy8366 459 LFIYTLVSFLGFIYIYFYVP 478 (513)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~ 478 (513)
|+..+++.++..+..+..+|
T Consensus 170 F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 170 FLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 99999999998887777777
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=125.47 Aligned_cols=144 Identities=14% Similarity=0.182 Sum_probs=117.8
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhcccccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEA 154 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~ 154 (513)
+++|.++.+.+++.+...++..++.+++|+++||+|||+.+..+.....+.......+++.+.+++.+++.+++.+...+
T Consensus 245 ~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~ 324 (393)
T PRK15011 245 NELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGG 324 (393)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999998888888888999999999999999998887776666655556677888888899999888887777
Q ss_pred chhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh----HhHHHHHHhhhHHHHHHHHHHHhccC
Q psy8366 155 PIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL----TDWRTTVLISAIFPILTMIMIAFIPE 219 (513)
Q Consensus 155 ~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----~~wr~~f~~~~~~~~~~~~~~~~~~e 219 (513)
....+..|..|+ +|+++.++.+....+|..+++.+++. ++|+..|++.+++.++.++..++.||
T Consensus 325 ~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 325 IGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 777888999875 68999999877777777777666554 48999999988888887777777665
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.2e-13 Score=127.56 Aligned_cols=160 Identities=10% Similarity=0.096 Sum_probs=123.0
Q ss_pred chhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhH
Q psy8366 315 PMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPL 393 (513)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (513)
......|.+.+++|.+... ++..+...++..++.++.|+++||+|||+.+..+..+..++.+++.... +.+..+
T Consensus 13 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 87 (379)
T TIGR00881 13 NFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST-----SLWVMA 87 (379)
T ss_pred hhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh-----hHHHHH
Confidence 3445567666788988876 8889999999999999999999999999999999888888877776654 334333
Q ss_pred HHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHH-HHhhhhhhccchhHHHHHHHHHHHHHHhh
Q psy8366 394 TIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFIST-KTYINLTSWFGLHGTLFIYTLVSFLGFIY 472 (513)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~-~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 472 (513)
+...+.+.+. ....+...+++.|.+|+++|+.+.++.+....+|..++| .+.+.+.+..+|+..+++.+++.++..++
T Consensus 88 ~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (379)
T TIGR00881 88 ALWALNGIFQ-GMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLI 166 (379)
T ss_pred HHHHHHHhhc-cccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 3333333332 344577778999999999999999999999999999999 46666777778998888888777666555
Q ss_pred eeEEcccC
Q psy8366 473 IYFYVPET 480 (513)
Q Consensus 473 ~~~~~~~~ 480 (513)
.++..++.
T Consensus 167 ~~~~~~~~ 174 (379)
T TIGR00881 167 CFLLLRDS 174 (379)
T ss_pred HheeeCCC
Confidence 55555544
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.7e-12 Score=121.97 Aligned_cols=158 Identities=14% Similarity=0.110 Sum_probs=122.3
Q ss_pred hhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHH
Q psy8366 316 MRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLT 394 (513)
Q Consensus 316 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (513)
.....|.+.++.|.+..+ +.......++..+++++.|++.||+|||+.+..+..+.+++.++..... +.+...+
T Consensus 39 ~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~ 113 (394)
T PRK10213 39 PVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFAN-----SFSLLLI 113 (394)
T ss_pred HHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHC-----hHHHHHH
Confidence 334567777888998877 8888888999999999999999999999999999999888776665532 3343333
Q ss_pred HHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhhee
Q psy8366 395 IFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 474 (513)
.-.+.+.+. ....+....++.|.+|+++|+.+.++.....++|..++|.+.+.+.+..||+..|++.++++++..++..
T Consensus 114 ~r~l~G~~~-g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~ 192 (394)
T PRK10213 114 GRACLGLAL-GGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWII 192 (394)
T ss_pred HHHHHHHhh-HHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 333333333 3345677788899999999999999999999999999999999999999999999888776665544333
Q ss_pred EEccc
Q psy8366 475 FYVPE 479 (513)
Q Consensus 475 ~~~~~ 479 (513)
...|+
T Consensus 193 ~~~p~ 197 (394)
T PRK10213 193 KSLPS 197 (394)
T ss_pred HHCCC
Confidence 33344
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.4e-12 Score=123.31 Aligned_cols=166 Identities=16% Similarity=0.095 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHH
Q psy8366 299 IMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLM 377 (513)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 377 (513)
+....+................+.+.++.|.+..+ ++..+...++..++.++.|+++||+|||+.+..+..+.+++.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~ 93 (405)
T TIGR00891 14 FSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLA 93 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33333444444444555666777777788988776 88888999999999999999999999999999888888777766
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccc--h
Q psy8366 378 LSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFG--L 455 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~ 455 (513)
..... +.+.......+.+.+ .....+...+++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+..+ |
T Consensus 94 ~~~~~-----~~~~l~~~~~l~G~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w 167 (405)
T TIGR00891 94 CGFAP-----GYITMFIARLVIGIG-MGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGW 167 (405)
T ss_pred HHHhc-----cHHHHHHHHHHHHhh-hhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence 65543 333333333333333 234456667889999999999999999999999999999999999888766 8
Q ss_pred hHHHHHHHHHHHHHH
Q psy8366 456 HGTLFIYTLVSFLGF 470 (513)
Q Consensus 456 ~~~~~~~~~~~~~~~ 470 (513)
+..+.+.++..++..
T Consensus 168 ~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 168 RALFFISILPIIFAL 182 (405)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888876555444443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-12 Score=125.90 Aligned_cols=142 Identities=16% Similarity=0.254 Sum_probs=118.5
Q ss_pred chhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhch----hHHHHHHHHHHhhccccccccc
Q psy8366 80 SDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAE----TVSIIMLGTVCMGLSVGCCEAP 155 (513)
Q Consensus 80 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~g~~~~~~~ 155 (513)
+....+.+.++..++..++.++.|++.||+|||+++.++.++.+++..+..... +++.+++.+++.|++.+...+.
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 346779999999999999999999999999999999999999988877766632 3466778899999999988888
Q ss_pred hhhhhhccCCccccchhhhHhh-HHHHHHHHHHHHHhhhH----------hHHHHHHhhhHHHHHHHH-HHHhccCch
Q psy8366 156 IISYIGEISEPRMRGSLSLFAG-AACNFGVFIIFLIYALT----------DWRTTVLISAIFPILTMI-MIAFIPESP 221 (513)
Q Consensus 156 ~~~~~~~~~~~~~r~~~~~~~~-~~~~lG~~~~~~l~~~~----------~wr~~f~~~~~~~~~~~~-~~~~~~e~p 221 (513)
...++.|++|+++|+++.++.+ ...++|..+||.+++.+ ||+..|.+.+++.++..+ ..++++|+.
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 8999999999999999999996 56777777777776543 499999998888777766 455677763
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.4e-12 Score=123.31 Aligned_cols=168 Identities=8% Similarity=0.032 Sum_probs=125.5
Q ss_pred HHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcC
Q psy8366 308 TIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQ 386 (513)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (513)
....+........|.+.++.|.+... ++..+...++..++.++.|+++||+|||+.+..+..+..++..++....
T Consensus 14 ~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~---- 89 (392)
T PRK10473 14 LYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE---- 89 (392)
T ss_pred HHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC----
Confidence 33333445556788888888888776 7888888899999999999999999999999988888877776665432
Q ss_pred CCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHH
Q psy8366 387 WPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVS 466 (513)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 466 (513)
+.+...+...+.+.+. ....+...+++.|.+|+++|+++.++.+....++..++|.+.+.+.+..||+..+++.+++.
T Consensus 90 -~~~~~~~~~~l~g~~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~ 167 (392)
T PRK10473 90 -TSSLFLAGRFLQGIGA-GCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMG 167 (392)
T ss_pred -cHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHH
Confidence 2233222222222222 23345667888999999999999999999999999999999998888889999888888777
Q ss_pred HHHHhheeEEcccCC
Q psy8366 467 FLGFIYIYFYVPETE 481 (513)
Q Consensus 467 ~~~~~~~~~~~~~~~ 481 (513)
++..++.....+|++
T Consensus 168 ~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 168 ILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHcCCCC
Confidence 766665544555543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.9e-11 Score=108.62 Aligned_cols=346 Identities=14% Similarity=0.175 Sum_probs=211.8
Q ss_pred CCcccchhhHH-HHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccc
Q psy8366 75 PDLILSDEQSS-WLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCE 153 (513)
Q Consensus 75 ~~~~~s~~~~~-~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~ 153 (513)
.+.|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+..+.++...+-+..+.-|++.+ ..
T Consensus 33 ~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a-~e 111 (412)
T PF01770_consen 33 PDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATA-AE 111 (412)
T ss_pred CccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHH-HH
Confidence 45889988874 56777777888899999999999999999999999999999999999999999999999999987 57
Q ss_pred cchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH------hHHHHHHhhhHHHHHHHHHHHhccCchhhhhhc
Q psy8366 154 APIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT------DWRTTVLISAIFPILTMIMIAFIPESPTWLVSK 227 (513)
Q Consensus 154 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~ 227 (513)
.+-++++-...++++-.++.+...++..+|-.++.+++..+ +.+...++......++++..+++|..++-..-+
T Consensus 112 vay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~ 191 (412)
T PF01770_consen 112 VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFH 191 (412)
T ss_pred HHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCccccee
Confidence 77889998889999999999999888888888888887765 677777777777777777778888765432212
Q ss_pred CChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHH
Q psy8366 228 GRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFI 307 (513)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (513)
++..+..+ .++......++..+.. ... .+.....+.........++++++ .-+..+.++...++..
T Consensus 192 r~~~~~~~-~~~~~~~~~~~~~~~~-----~~~-------~~~~~~~~~~~~~~l~~l~~~~~-~~y~~~~ll~WSlWWa 257 (412)
T PF01770_consen 192 RKPPAEQD-ANESESDKMNESPESS-----SST-------EKSPSTESSSRKSVLRLLWKDFK-SCYSNPRLLLWSLWWA 257 (412)
T ss_pred ccCccccc-cccccccccccccccc-----ccc-------ccCcccccchHHHHHHHHHHHHH-HHhcCchHHHHHHHHH
Confidence 11111000 0000000000000000 000 00000000000011111122221 1122333444555556
Q ss_pred HHhhchhchhhhHHHHHHhcCCCc---h-hHHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhh--HHHHHHHHHHHHH
Q psy8366 308 TIIASLQPMRPFLVEIFRTFGLPM---K-SEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWST--GINTFFTLMLSIC 381 (513)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~g~~~---~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~--~~~~~~~~~~~~~ 381 (513)
...+++..+..|.+.+.++..-+. . .|..-.+..+.+.++++..|++..++.+..-+.++. .+.+..++++...
T Consensus 258 ~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t 337 (412)
T PF01770_consen 258 FATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFT 337 (412)
T ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666667777788888877661111 1 267778888888889999999866666644443332 2223333333332
Q ss_pred HHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHH
Q psy8366 382 AMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFI 441 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 441 (513)
. +.|.......++.....+ ..++...-++.....+.-|..+|++.++..+-..+
T Consensus 338 ~-----~Iwv~Y~~yIif~~~y~f-liTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQti 391 (412)
T PF01770_consen 338 G-----NIWVCYAGYIIFRSLYMF-LITIASFQIAKNLSEERYALVFGINTFVALVLQTI 391 (412)
T ss_pred h-----HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccceeeeeeeHHHHHHHHHHh
Confidence 2 455555555555554433 33443344444445566677777777665544443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-12 Score=124.72 Aligned_cols=137 Identities=18% Similarity=0.139 Sum_probs=118.1
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhH--HHHHHHHHHhhcccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETV--SIIMLGTVCMGLSVGCC 152 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~g~~~~ 152 (513)
++++.++.+.+++.+.+.++..++.++.|++.||+|||+.+.++..+.+++.++..+.++. ..+++..++.|++.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 312 (377)
T TIGR00890 233 QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGT 312 (377)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccc
Confidence 5678888899999999999999999999999999999999999999999888888777643 33456778889988888
Q ss_pred ccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHH
Q psy8366 153 EAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLISAIFPILTM 211 (513)
Q Consensus 153 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~ 211 (513)
.+....++.|.+|+++|+++.++......+|..+++.+.+.+ ||++.|++.+++.++..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 313 ISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred hhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 888888999999999999999999999999988888776544 89999998887766543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.4e-12 Score=124.04 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=122.4
Q ss_pred hhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchh
Q psy8366 313 LQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWI 391 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
........|.+.+++|.+... ++..+...++..++.++.|+++||+|||+.+..+..+..++.++..... +.+.
T Consensus 31 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~~ 105 (406)
T PRK11551 31 LQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAW-----DFPS 105 (406)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc-----cHHH
Confidence 444556677777888988776 8888999999999999999999999999999998877777666555432 3333
Q ss_pred hHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHh
Q psy8366 392 PLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFI 471 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 471 (513)
..+...+.+.+. ....+...+++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..+|+..+++.+++.++..+
T Consensus 106 ~~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (406)
T PRK11551 106 LLVARLLTGVGL-GGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVP 184 (406)
T ss_pred HHHHHHHHHhhH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHH
Confidence 333333333333 2345666688999999999999999999999999999999988888888999888887766555544
Q ss_pred heeEEcccC
Q psy8366 472 YIYFYVPET 480 (513)
Q Consensus 472 ~~~~~~~~~ 480 (513)
+...+.+|+
T Consensus 185 ~~~~~l~~~ 193 (406)
T PRK11551 185 LLMRWLPES 193 (406)
T ss_pred HHHHhCCCC
Confidence 444444543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=123.20 Aligned_cols=152 Identities=20% Similarity=0.212 Sum_probs=120.1
Q ss_pred chhhhHH-HHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhh
Q psy8366 315 PMRPFLV-EIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIP 392 (513)
Q Consensus 315 ~~~~~~~-~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (513)
......| .+.+++|.+..+ ++..+...++..++.++.|+++||+|||+.+..+..+.+++.++..+.. +.+ .
T Consensus 14 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----~~~-~ 87 (352)
T PF07690_consen 14 IISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFAS-----NFW-L 87 (352)
T ss_dssp HHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHC-----CHH-H
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhh-----hHH-H
Confidence 3445566 555678888876 8888999999999999999999999999999999888888844444322 444 3
Q ss_pred HHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhh
Q psy8366 393 LTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIY 472 (513)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 472 (513)
+....++.+.......+....++.|.+|+++|+.+.++.+....+|..++|.+.+.+.+..||+..+++.+++.++..++
T Consensus 88 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 88 LLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred Hhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence 33333333333345567777899999999999999999999999999999999999999999999999999888887664
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.9e-12 Score=122.59 Aligned_cols=138 Identities=14% Similarity=0.167 Sum_probs=117.4
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhc
Q psy8366 83 QSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGE 162 (513)
Q Consensus 83 ~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~ 162 (513)
+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.......|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45667788888999999999999999999999999999999988888888888888899999999999888888888889
Q ss_pred cCCccccchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHHHHHHhccCc
Q psy8366 163 ISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLISAIFPILTMIMIAFIPES 220 (513)
Q Consensus 163 ~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~ 220 (513)
.+|+++|+++.++++....+|..+++.+.+.+ ||++.|++.+++.++..+..++++++
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999988888877766654443 89999999888888777765555443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.1e-12 Score=121.61 Aligned_cols=158 Identities=9% Similarity=0.015 Sum_probs=119.0
Q ss_pred chhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhH
Q psy8366 315 PMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPL 393 (513)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (513)
......|.+..+.+.+... ++..+...++..++.++.|+++||+|||+.+..+..+..++..++.......+.+.+...
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (365)
T TIGR00900 17 ITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVY 96 (365)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 3445566666777777666 888899999999999999999999999999998888777776666554322221233333
Q ss_pred HHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhhe
Q psy8366 394 TIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYI 473 (513)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 473 (513)
+...+.+.+. ....+...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..||+..+++.++..++..++.
T Consensus 97 ~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 175 (365)
T TIGR00900 97 VLAGILAIAQ-AFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLI 175 (365)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333332 344566678999999999999999999999999999999999999999999998888776666554433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-11 Score=119.86 Aligned_cols=162 Identities=20% Similarity=0.234 Sum_probs=120.8
Q ss_pred chhchhhhHHHHHHhcCCCchh------HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhc
Q psy8366 312 SLQPMRPFLVEIFRTFGLPMKS------EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNL 385 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (513)
.......++|.+.++.|.+..+ +....+..+...++.++.|+++||+|||+.+..+..+.+++.+++....
T Consensus 29 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--- 105 (408)
T PRK09874 29 AFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQ--- 105 (408)
T ss_pred HHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHh---
Confidence 3445567788888888877532 5667778888999999999999999999999988887777766655432
Q ss_pred CCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHH
Q psy8366 386 QWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLV 465 (513)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 465 (513)
+.+...+...+.+.+ .+..+.....+.+.+|+++|+.+.|+.+....+|..++|.+.+.+.+..||+..+++.+++
T Consensus 106 --~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 181 (408)
T PRK09874 106 --NIWQFLILRALLGLL--GGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASV 181 (408)
T ss_pred --hHHHHHHHHHHHHHh--hhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 333333333333332 2344555677888899999999999999999999999999999999989999999888877
Q ss_pred HHHHHhheeEEcccC
Q psy8366 466 SFLGFIYIYFYVPET 480 (513)
Q Consensus 466 ~~~~~~~~~~~~~~~ 480 (513)
.++..+...+..++.
T Consensus 182 ~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 182 LFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHHHHHhccC
Confidence 776665544444443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-11 Score=121.08 Aligned_cols=157 Identities=12% Similarity=0.035 Sum_probs=112.1
Q ss_pred hhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchh
Q psy8366 313 LQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWI 391 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
......+.|.+.+++|++..+ +...+...++..++.++.|+++||+|||+.+..+.++.+++.++..... +.+.
T Consensus 52 ~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-----s~~~ 126 (476)
T PLN00028 52 TFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS-----SATG 126 (476)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc-----CHHH
Confidence 445556777777889998776 7777788888999999999999999999999888877777766555543 3333
Q ss_pred hHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh---------ccchhHHHHHH
Q psy8366 392 PLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTS---------WFGLHGTLFIY 462 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---------~~g~~~~~~~~ 462 (513)
..+..++.+.+. ....+ ...++.|.+|+++|+.+.|+.+...++|+.+++.+.+.+.. ..||+..|++.
T Consensus 127 l~~~r~l~G~~~-~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~ 204 (476)
T PLN00028 127 FIAVRFFIGFSL-ATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVP 204 (476)
T ss_pred HHHHHHHHHHHH-HhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Confidence 323333333332 22222 34567899999999999999998888888888776654432 24899999998
Q ss_pred HHHHHHHHhheeEE
Q psy8366 463 TLVSFLGFIYIYFY 476 (513)
Q Consensus 463 ~~~~~~~~~~~~~~ 476 (513)
+++.++..++.+++
T Consensus 205 g~l~l~~~l~~~~~ 218 (476)
T PLN00028 205 GLLHIIMGILVLTL 218 (476)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777665544433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.9e-12 Score=119.80 Aligned_cols=161 Identities=12% Similarity=0.157 Sum_probs=123.8
Q ss_pred hchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhh
Q psy8366 314 QPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIP 392 (513)
Q Consensus 314 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (513)
.......|.+.++.|.+... ++..+...++..++.++.|++.||+|||+.+..+..+.+++.++..... +.+..
T Consensus 20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~-----~~~~l 94 (382)
T PRK10091 20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSS-----SYLML 94 (382)
T ss_pred HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhC-----cHHHH
Confidence 34556777777888988776 8889999999999999999999999999999999888888877666543 34433
Q ss_pred HHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhh
Q psy8366 393 LTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIY 472 (513)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 472 (513)
.+.-.+.+.+. ....+.......|.+|+++|+.+.++......++..++|.+.+.+.+..||+..|.+.+++.++..+.
T Consensus 95 ~~~r~l~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 95 AIGRLVSGFPH-GAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHhhh-HHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 33333333332 22345555678889998999999999999999999999999999999899999999888777665554
Q ss_pred eeEEcccC
Q psy8366 473 IYFYVPET 480 (513)
Q Consensus 473 ~~~~~~~~ 480 (513)
.+...|+.
T Consensus 174 ~~~~lp~~ 181 (382)
T PRK10091 174 IYFWVPDI 181 (382)
T ss_pred HHHhCCCC
Confidence 44445554
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=122.81 Aligned_cols=166 Identities=13% Similarity=0.046 Sum_probs=124.4
Q ss_pred HHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcC
Q psy8366 308 TIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQ 386 (513)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (513)
........+..+.|.+.+++|.+... ++......++..++.++.|+++||+|||+.+..+..+..++.++.....
T Consensus 21 ~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~---- 96 (471)
T PRK10504 21 MQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSG---- 96 (471)
T ss_pred HHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhC----
Confidence 33333556667889998999998876 7777888888899999999999999999999888777777665544321
Q ss_pred CCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHH
Q psy8366 387 WPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVS 466 (513)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 466 (513)
+.+...+...+.+.+. ....+...+.+.|.+|+++|+++.|+.+...++|..++|.+.|.+.+..||+..|.+...++
T Consensus 97 -~~~~l~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~ 174 (471)
T PRK10504 97 -TLNELLLARVLQGVGG-AMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVG 174 (471)
T ss_pred -CHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHH
Confidence 3333333333333332 33456667888999999999999999999999999999999999999999999998877666
Q ss_pred HHHHhheeEEccc
Q psy8366 467 FLGFIYIYFYVPE 479 (513)
Q Consensus 467 ~~~~~~~~~~~~~ 479 (513)
.+..+......++
T Consensus 175 ~l~~~~~~~~~~~ 187 (471)
T PRK10504 175 IIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHhCCC
Confidence 6655544433333
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-12 Score=128.01 Aligned_cols=162 Identities=16% Similarity=0.203 Sum_probs=126.4
Q ss_pred hhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchh
Q psy8366 313 LQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWI 391 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
........|.+.++.|.+... ++......++..++.++.|+++||+|||+.+..+..+..++.++..... +.+.
T Consensus 18 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~~ 92 (485)
T TIGR00711 18 STIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAP-----NLEL 92 (485)
T ss_pred HHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcC-----CHHH
Confidence 455667788888889988776 8888999999999999999999999999999999888888777665432 3333
Q ss_pred hHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHh
Q psy8366 392 PLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFI 471 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 471 (513)
.+ ...++.+.......+...+++.|.+|+++|+.+.++......+|..++|.+.+.+.+..||++.|++.+.+.++..+
T Consensus 93 l~-~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~ 171 (485)
T TIGR00711 93 MI-IFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVV 171 (485)
T ss_pred HH-HHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHH
Confidence 33 33333333333455677789999999999999999999999999999999999999999999998887776666555
Q ss_pred heeEEcccC
Q psy8366 472 YIYFYVPET 480 (513)
Q Consensus 472 ~~~~~~~~~ 480 (513)
+..+..+++
T Consensus 172 ~~~~~~~~~ 180 (485)
T TIGR00711 172 VAFFILPRD 180 (485)
T ss_pred HHHHHcCCc
Confidence 444444443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.2e-12 Score=120.77 Aligned_cols=142 Identities=23% Similarity=0.379 Sum_probs=130.8
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhh-HHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKR-LMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCE 153 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~ 153 (513)
+.+|.++.+.+++.+...++..++.++.|++.||+|||+ .+..+..+..++.++..+.++.+.+.+..++.|++.+...
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 283 (352)
T cd06174 204 EVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAF 283 (352)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccc
Confidence 445889999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred cchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHHHHHHh
Q psy8366 154 APIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLISAIFPILTMIMIAF 216 (513)
Q Consensus 154 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~ 216 (513)
+...+++.|..|+++|++..++......+|..+++.+.+.+ +|++.+++.+++.++..+..++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 284 PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred hhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence 99999999999999999999999999999998888887654 8999999999998887775543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=123.36 Aligned_cols=172 Identities=12% Similarity=0.084 Sum_probs=127.3
Q ss_pred HHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHH
Q psy8366 303 ILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSIC 381 (513)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 381 (513)
.+..+....-...+..-.|.+.+++|.+..+ ++....+.++...+.+..|+++||+|||+.+..+..+..++.+.....
T Consensus 12 ~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a 91 (495)
T PRK14995 12 VLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS 91 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc
Confidence 3333333333455666788888888887766 788888899999999999999999999999999999988888777654
Q ss_pred HHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccc-cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHH
Q psy8366 382 AMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEV-FPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLF 460 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 460 (513)
. +.+..++.-.+.+.+. ....+.....+.+. .|+++|+++.|+......+|..++|.+.+.+.+..||++.|+
T Consensus 92 ~-----~~~~li~~r~l~G~g~-~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~ 165 (495)
T PRK14995 92 P-----TASWLIATRALLAIGA-AMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFL 165 (495)
T ss_pred C-----CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHH
Confidence 3 3343333333333333 33445444555454 477999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhheeEEcccC
Q psy8366 461 IYTLVSFLGFIYIYFYVPET 480 (513)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~ 480 (513)
+...++++..++..+..|+.
T Consensus 166 i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 166 INVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 88777776665555555543
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-11 Score=117.45 Aligned_cols=161 Identities=12% Similarity=0.032 Sum_probs=118.5
Q ss_pred hchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhh
Q psy8366 314 QPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIP 392 (513)
Q Consensus 314 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (513)
......+|.+.++.|.+... +.......++..++.++.|+++||+|||+.+..+..+..++.+...... +.+..
T Consensus 25 ~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-----~~~~l 99 (394)
T PRK11652 25 TIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH-----SLTVL 99 (394)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc-----cHHHH
Confidence 34445577777889998877 7888899999999999999999999999999888887777766655432 23332
Q ss_pred HHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhh
Q psy8366 393 LTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIY 472 (513)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 472 (513)
.+...+.+.+. ....+....+..|.+++++++.+.+..+....++..++|.+.+.+.+..||+..+++.+++.++..++
T Consensus 100 ~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~ 178 (394)
T PRK11652 100 IAASAIQGLGT-GVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS 178 (394)
T ss_pred HHHHHHHHhhh-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 22222222222 22234455677888888999999999999999999999999999999889999998877666654444
Q ss_pred eeEEcccC
Q psy8366 473 IYFYVPET 480 (513)
Q Consensus 473 ~~~~~~~~ 480 (513)
..+..||+
T Consensus 179 ~~~~~~~~ 186 (394)
T PRK11652 179 MARWMPET 186 (394)
T ss_pred HHHhCCcc
Confidence 33444554
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-11 Score=117.23 Aligned_cols=156 Identities=11% Similarity=0.017 Sum_probs=114.8
Q ss_pred chhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhhhHHHHhhccc-CCchHHHHhhHHHHHHHHHHHHHHHhcCCC
Q psy8366 312 SLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGSFVSTITVNKL-GKRGMTLWSTGINTFFTLMLSICAMNLQWP 388 (513)
Q Consensus 312 ~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (513)
.++.+..++|.++. +.|++... +...........++.+++|+++||+ |||+.+.++..+..++.+++.... ..
T Consensus 24 s~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~----~~ 99 (493)
T PRK15462 24 SFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE----IH 99 (493)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh----cc
Confidence 35566678888875 47888776 6777788888899999999999999 999999999988888876554321 01
Q ss_pred chhhHHHHHHHHHHHhccccchhhhhhccccchh--hhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHH
Q psy8366 389 GWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQ--VRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVS 466 (513)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 466 (513)
.............+. ....+...+++.|.+|++ +|+++.++.+...++|+.++|.+.+++.+..||+..|.+.++..
T Consensus 100 ~~~~~l~l~li~iG~-G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm 178 (493)
T PRK15462 100 PSFLYLSLAIIVCGY-GLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGM 178 (493)
T ss_pred hhHHHHHHHHHHHhc-ccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 111122122222222 233455568899999875 69999999999999999999999999999999999998876655
Q ss_pred HHHHhh
Q psy8366 467 FLGFIY 472 (513)
Q Consensus 467 ~~~~~~ 472 (513)
+++.+.
T Consensus 179 ~l~li~ 184 (493)
T PRK15462 179 IAGLVI 184 (493)
T ss_pred HHHHHH
Confidence 554443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-11 Score=117.14 Aligned_cols=162 Identities=12% Similarity=0.070 Sum_probs=120.7
Q ss_pred hchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhh
Q psy8366 314 QPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIP 392 (513)
Q Consensus 314 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (513)
.....-+|.+.++++.+... +...++..++..++.++.|+++||+|||+.+..+..+..++.++..... +.+..
T Consensus 33 ~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~-----~~~~l 107 (413)
T PRK15403 33 DLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTT-----SMTQF 107 (413)
T ss_pred HhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcC-----CHHHH
Confidence 33344455566678887776 7788888999999999999999999999999988887777766665532 33333
Q ss_pred HHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhh
Q psy8366 393 LTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIY 472 (513)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 472 (513)
++.-.+.+.+. ....+..+....|.+|+++++++.++.+....++..++|.+.+.+.+..||+..|++.+++.++..++
T Consensus 108 ~~~r~l~Gi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~ 186 (413)
T PRK15403 108 LIARFIQGTSI-CFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 33333333332 22234556788899999999999999999999999999999999998889999999888877776654
Q ss_pred eeEEcccCC
Q psy8366 473 IYFYVPETE 481 (513)
Q Consensus 473 ~~~~~~~~~ 481 (513)
.++..||++
T Consensus 187 ~~~~lp~~~ 195 (413)
T PRK15403 187 LLLAMPETV 195 (413)
T ss_pred HHHhCCCCc
Confidence 444456543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=120.67 Aligned_cols=161 Identities=9% Similarity=0.073 Sum_probs=113.6
Q ss_pred hhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhH-
Q psy8366 316 MRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPL- 393 (513)
Q Consensus 316 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 393 (513)
.....|.+. +.|++..+ ++......++..++.++.|+++||+|||+.+..+..+.+++.+++...... .+....+
T Consensus 46 ~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ 122 (438)
T TIGR00712 46 FALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA--TSSIAIMF 122 (438)
T ss_pred HHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc--cchHHHHH
Confidence 334455444 45888877 888889999999999999999999999999888887777776665443200 0122222
Q ss_pred HHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh-ccchhHHHHHHHHHHHHHHhh
Q psy8366 394 TIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTS-WFGLHGTLFIYTLVSFLGFIY 472 (513)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~~ 472 (513)
+...+.+.+. ....+.....+.|.+|+++|++++|+.+....+++.+++.+.+...+ ..||+..|++.++++++..++
T Consensus 123 ~~~~l~g~~~-g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~ 201 (438)
T TIGR00712 123 VLLFLNGWFQ-GMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALF 201 (438)
T ss_pred HHHHHHHHHh-hcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 2222233332 22345455778899999999999999999999999999988776554 468999999888877776554
Q ss_pred eeEEcccC
Q psy8366 473 IYFYVPET 480 (513)
Q Consensus 473 ~~~~~~~~ 480 (513)
.+++.+|.
T Consensus 202 ~~~~~~~~ 209 (438)
T TIGR00712 202 AFAMMRDT 209 (438)
T ss_pred HHHhccCC
Confidence 44455543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.7e-11 Score=117.59 Aligned_cols=163 Identities=10% Similarity=0.047 Sum_probs=120.8
Q ss_pred hhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchh
Q psy8366 313 LQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWI 391 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
...+...++.+.++++.+... +.......++..++.++.|+++||+|||+.+..+..+..++.+...... +.+.
T Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----~~~~ 103 (406)
T PRK15402 29 NDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ-----SIEQ 103 (406)
T ss_pred hhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc-----cHHH
Confidence 344445566677788888776 7888889999999999999999999999999988888777766655432 3333
Q ss_pred hHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHh
Q psy8366 392 PLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFI 471 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 471 (513)
......+.+.+. ....+.....+.|.+|+++|..+.++......++..++|.+.+.+.+..||+..+++.+++.++..+
T Consensus 104 l~~~~~l~G~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~ 182 (406)
T PRK15402 104 FTLLRFLQGIGL-CFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFF 182 (406)
T ss_pred HHHHHHHHHhHh-hhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence 222222222222 2334566678889999999999999998888899999999999999988999999888877776665
Q ss_pred heeEEcccCC
Q psy8366 472 YIYFYVPETE 481 (513)
Q Consensus 472 ~~~~~~~~~~ 481 (513)
..+...|+++
T Consensus 183 ~~~~~~~~~~ 192 (406)
T PRK15402 183 GLWRAMPETA 192 (406)
T ss_pred HHHHhCCCCC
Confidence 4444445543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-11 Score=118.75 Aligned_cols=162 Identities=10% Similarity=0.096 Sum_probs=110.7
Q ss_pred hhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHH
Q psy8366 316 MRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLT 394 (513)
Q Consensus 316 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (513)
+....|.+.++ |++... ++..+...++..++.++.|+++||+|||+.+..+..+.+++.+.+.+.... ..+.+...+
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~ 125 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-TSSIAVMFV 125 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc-cccHHHHHH
Confidence 34456665555 888776 888899999999999999999999999999999988888777766654211 111222223
Q ss_pred HHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHH-HHHHhhhhhhccchhHHHHHHHHHHHHHHhhe
Q psy8366 395 IFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFI-STKTYINLTSWFGLHGTLFIYTLVSFLGFIYI 473 (513)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 473 (513)
...+.+.+. ....+.....+.|.+|+++|+++.|+.+....+|+.+ +|.+...+....||+..|++.+++.++..++.
T Consensus 126 ~~~l~gi~~-g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~ 204 (452)
T PRK11273 126 LLFLCGWFQ-GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFA 204 (452)
T ss_pred HHHHHHHHH-hccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 333333333 2334544567788899999999999999999988754 44433333334588988888877766655544
Q ss_pred eEEcccC
Q psy8366 474 YFYVPET 480 (513)
Q Consensus 474 ~~~~~~~ 480 (513)
.++.+++
T Consensus 205 ~~~~~~~ 211 (452)
T PRK11273 205 FAMMRDT 211 (452)
T ss_pred HHHccCC
Confidence 4455543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-11 Score=118.38 Aligned_cols=132 Identities=14% Similarity=0.131 Sum_probs=114.9
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhcc
Q psy8366 84 SSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEI 163 (513)
Q Consensus 84 ~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~ 163 (513)
.++..+.+.++..+++++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++++++.|++.+...+...+.+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45667778888899999999999999999999999999999988888888888888999999999998888888889999
Q ss_pred CCccccchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHHHHHH
Q psy8366 164 SEPRMRGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLISAIFPILTMIMIA 215 (513)
Q Consensus 164 ~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~ 215 (513)
+|+++||++.++.+....+|..+++.+.+.+ ||++.|.+.+++.++..+..+
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888887777766544 899999999888877766544
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-11 Score=119.35 Aligned_cols=144 Identities=13% Similarity=0.196 Sum_probs=119.6
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhcccccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEA 154 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~ 154 (513)
+++|.++.+.+++.+...+...++.++.|++.||+|||+.+.++.++..+......+.++.+.+.+.+++.|++.+...+
T Consensus 228 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 307 (375)
T TIGR00899 228 HELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAG 307 (375)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999988888777888899999999999999999888877776666666778888888899999999988888
Q ss_pred chhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHHHHHHhccC
Q psy8366 155 PIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLISAIFPILTMIMIAFIPE 219 (513)
Q Consensus 155 ~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e 219 (513)
....++.|..|+ +++++.++......+|..+++.+.+.+ ||+..|++.+++.++..+...+++|
T Consensus 308 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 308 IGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 888899998875 567999999888888888877776544 8999999998888877776665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.2e-11 Score=114.98 Aligned_cols=159 Identities=11% Similarity=0.043 Sum_probs=119.4
Q ss_pred hchhhhHHHHH-HhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchh
Q psy8366 314 QPMRPFLVEIF-RTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWI 391 (513)
Q Consensus 314 ~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
.....+.+.++ ++.|.+... ++......+...+.+++.|+++||+|||+.+..+..+..++.+.+.... +.+.
T Consensus 27 ~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~-----~~~~ 101 (400)
T PRK11646 27 FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAH-----EPWL 101 (400)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhc-----cHHH
Confidence 34455666655 568888876 8888888888889999999999999999999999998888887766532 3333
Q ss_pred hHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHh
Q psy8366 392 PLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFI 471 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 471 (513)
..+...+.+.+. ....+...+++.|.+|+++|+++.|+.+...++|..++|.+.+.+. ..||+..|++.++.+++..+
T Consensus 102 l~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i 179 (400)
T PRK11646 102 LWLSCILSGLGG-TLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAA 179 (400)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHH
Confidence 333333333222 2344666678899999999999999999999999999999999998 67999988887777666554
Q ss_pred heeEEccc
Q psy8366 472 YIYFYVPE 479 (513)
Q Consensus 472 ~~~~~~~~ 479 (513)
+..+..++
T Consensus 180 ~~~~~~~~ 187 (400)
T PRK11646 180 FNAWLLPA 187 (400)
T ss_pred HHHHhCCc
Confidence 43333443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-11 Score=117.61 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=114.4
Q ss_pred hhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchh
Q psy8366 313 LQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWI 391 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
........|.+.++.|.+..+ ++..+...++..++.++.|+++||+|||+.+..+..+.+++.++..... +.+.
T Consensus 34 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----~~~~ 108 (426)
T PRK12307 34 FMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS-----GVIM 108 (426)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh-----HHHH
Confidence 344455566666788888776 7888889999999999999999999999999999998888877766654 3333
Q ss_pred hHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHH
Q psy8366 392 PLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTL 464 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 464 (513)
..+.-.+.+.+. ....+....++.|.+|+++|+++.++......+|..+++.+.+.+.+..||+..+++...
T Consensus 109 l~~~r~l~G~g~-g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 109 LTLSRFIVGMGM-AGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL 180 (426)
T ss_pred HHHHHHHHHHHH-hhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 333333333332 344566668899999999999999999999999999999999999888999998876443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-11 Score=115.02 Aligned_cols=160 Identities=9% Similarity=-0.008 Sum_probs=115.1
Q ss_pred chhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhH
Q psy8366 315 PMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPL 393 (513)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (513)
.+....|.+.+++|.+..+ ++..+...++..++.+..|+++||+|||+.+.........+.. ..... .+.+..+
T Consensus 9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~~----~~~~~l~ 83 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLDP----FNYEWLL 83 (368)
T ss_pred HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHHh----ccHHHHH
Confidence 3446777777889998877 8888889999999999999999999988876544433333221 11211 1222323
Q ss_pred HHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhhe
Q psy8366 394 TIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYI 473 (513)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 473 (513)
+.-.+.+.+. +..........|.+|+++|+++.++.+....+|..+++.+.+.+.+..||+..|.+.+++.++..++.
T Consensus 84 ~~R~l~G~g~--~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~ 161 (368)
T TIGR00903 84 ACQLLAALGQ--PFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILV 161 (368)
T ss_pred HHHHHHHhHh--HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 3333333332 22334445668899999999999999999999999999999999999999999999888877766655
Q ss_pred eEEcccCC
Q psy8366 474 YFYVPETE 481 (513)
Q Consensus 474 ~~~~~~~~ 481 (513)
++..||.+
T Consensus 162 ~~~lp~~p 169 (368)
T TIGR00903 162 LAALPALP 169 (368)
T ss_pred HHHcCCCC
Confidence 55666543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.3e-11 Score=118.32 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=114.5
Q ss_pred hchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhh
Q psy8366 314 QPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIP 392 (513)
Q Consensus 314 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (513)
.....+.+.+.++.|.+... ++..+...+...++.++.|+++||+|||+.++.+..+..++.+++.... +.+..
T Consensus 36 ~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----~~~~l 110 (455)
T TIGR00892 36 KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSS-----NVIEL 110 (455)
T ss_pred cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhh-----hHHHH
Confidence 44566788888888988776 7777777788888999999999999999999988877777766665543 23322
Q ss_pred HHHH-HHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHh
Q psy8366 393 LTIF-CTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFI 471 (513)
Q Consensus 393 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 471 (513)
.... .+.+.+.+. ..+.....+.+.+| ++|+++.|+.+....+|..++|.+.+.+.+..||+..|++.+++.++..+
T Consensus 111 ~~~~~~l~G~~~~~-~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v 188 (455)
T TIGR00892 111 YLTAGFITGLGLAF-NFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCV 188 (455)
T ss_pred HHHHHHHHHhcchh-hhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 2222 222222222 22444466778876 78999999999999999999999999999999999999999887776554
Q ss_pred hee
Q psy8366 472 YIY 474 (513)
Q Consensus 472 ~~~ 474 (513)
..+
T Consensus 189 ~~~ 191 (455)
T TIGR00892 189 CGA 191 (455)
T ss_pred HHH
Confidence 433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-11 Score=117.20 Aligned_cols=159 Identities=15% Similarity=0.193 Sum_probs=123.4
Q ss_pred hhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHH
Q psy8366 316 MRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLT 394 (513)
Q Consensus 316 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (513)
....+|.+.+++|.+..+ +...+...++..++.++.|+++||+|||+.+..+..+..++...+.... +.+...+
T Consensus 10 ~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~ 84 (377)
T PRK11102 10 YLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ-----TIDQLIY 84 (377)
T ss_pred HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc-----cHHHHHH
Confidence 336677777888988776 8888899999999999999999999999999999888888877776543 3333333
Q ss_pred HHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhhee
Q psy8366 395 IFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 474 (513)
...+.+.+. ....+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..+.+.++++++..++..
T Consensus 85 ~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (377)
T PRK11102 85 MRFLHGLAA-AAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVF 163 (377)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 333333332 3344556688999999999999999999999999999999999999988999998888777776655444
Q ss_pred EEcccC
Q psy8366 475 FYVPET 480 (513)
Q Consensus 475 ~~~~~~ 480 (513)
+..+|+
T Consensus 164 ~~~~~~ 169 (377)
T PRK11102 164 FFIPET 169 (377)
T ss_pred HhCCcc
Confidence 444543
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.9e-11 Score=113.85 Aligned_cols=154 Identities=10% Similarity=-0.008 Sum_probs=114.3
Q ss_pred chhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhH
Q psy8366 315 PMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPL 393 (513)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (513)
......|.+.++.|.+... ++..++..++..++.++.|+++||+|||+.+..+..+..++.++..... +.+...
T Consensus 24 ~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~~l~ 98 (401)
T PRK11043 24 MYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE-----SAAQLL 98 (401)
T ss_pred HHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc-----CHHHHH
Confidence 3334445556778888776 8888899999999999999999999999999888877777666655432 333333
Q ss_pred HHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhhe
Q psy8366 394 TIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYI 473 (513)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 473 (513)
+...+.+.+. ....+...+.+.|.+|+++++...+..+....++..++|.+.+.+.+..||+..+++.+++.++..++.
T Consensus 99 ~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 177 (401)
T PRK11043 99 VLRFVQAVGV-CSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPT 177 (401)
T ss_pred HHHHHHHhhh-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 2222222222 122334456788999999899999999999999999999999999999999998888877777665544
Q ss_pred e
Q psy8366 474 Y 474 (513)
Q Consensus 474 ~ 474 (513)
+
T Consensus 178 ~ 178 (401)
T PRK11043 178 L 178 (401)
T ss_pred H
Confidence 3
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-11 Score=115.99 Aligned_cols=138 Identities=14% Similarity=0.138 Sum_probs=117.9
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhcccccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEA 154 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~ 154 (513)
+|+|.++.+.|++.+...++..++.++.+++.||+|+|+.+.++.++.++...+.+++++.+.+++.+++.|++.+...+
T Consensus 233 ~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~ 312 (382)
T TIGR00902 233 QAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHL 312 (382)
T ss_pred HHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhccCCccccchhhhHhh-HHHHHHHHHHHHHhhh----HhHHHHHHhhhHHHHHHHHHH
Q psy8366 155 PIISYIGEISEPRMRGSLSLFAG-AACNFGVFIIFLIYAL----TDWRTTVLISAIFPILTMIMI 214 (513)
Q Consensus 155 ~~~~~~~~~~~~~~r~~~~~~~~-~~~~lG~~~~~~l~~~----~~wr~~f~~~~~~~~~~~~~~ 214 (513)
....++.+. |+++|++..++++ ...++|..+++.+++. +++ ..|++.+.++++..++.
T Consensus 313 ~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 313 AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 999999998 9999999999875 3555666666555544 475 55677777666555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.6e-11 Score=113.17 Aligned_cols=154 Identities=14% Similarity=0.048 Sum_probs=116.7
Q ss_pred hhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchh
Q psy8366 313 LQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWI 391 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
........|.+.+++|++..+ +.......++..++.++.|++.||+|||+.+..+..+..++.++..... +.+.
T Consensus 23 ~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~-----~~~~ 97 (394)
T PRK03699 23 VIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSH-----SLAL 97 (394)
T ss_pred HHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcc-----hHHH
Confidence 445566778887888998776 7888888999999999999999999999999888888777776665532 3333
Q ss_pred hHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh-ccchhHHHHHHHHHHHHHH
Q psy8366 392 PLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTS-WFGLHGTLFIYTLVSFLGF 470 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~ 470 (513)
..+...+.+.+.+ ...+.....+.|.+|+++|+.+.+..+....+++.++|.+.+.+.+ ..||+..|.+.+++.++..
T Consensus 98 ~~~~~~l~G~~~g-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~ 176 (394)
T PRK03699 98 FSIAMFVLGVVSG-ITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIF 176 (394)
T ss_pred HHHHHHHHHHhhH-hhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 3333333333332 2345556788999999999999999998889999999999888765 4689999988777766654
Q ss_pred hh
Q psy8366 471 IY 472 (513)
Q Consensus 471 ~~ 472 (513)
++
T Consensus 177 ~~ 178 (394)
T PRK03699 177 IL 178 (394)
T ss_pred HH
Confidence 43
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.31 E-value=6e-11 Score=114.87 Aligned_cols=147 Identities=12% Similarity=-0.023 Sum_probs=103.1
Q ss_pred chhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhH
Q psy8366 315 PMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPL 393 (513)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (513)
....+.+.+.++.|.+..+ +...+...++..++.++.|++.||+|||+.+..+..+.+++.+++..... ...+.+...
T Consensus 31 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ 109 (402)
T TIGR00897 31 LEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGL-GHANYPLIL 109 (402)
T ss_pred hHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc-cCccHHHHH
Confidence 3445677777888988776 88899999999999999999999999999999988888777654432210 011222222
Q ss_pred HHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHH-HHHHHHhhhhhhccchhHHHHHHH
Q psy8366 394 TIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVN-FISTKTYINLTSWFGLHGTLFIYT 463 (513)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~~~~~~~g~l~~~~g~~~~~~~~~ 463 (513)
....+.+.+. ....+.....+.+.+|+++|++++|+.+....+|. .++|.+.+.+.+..|++..++...
T Consensus 110 ~~~~i~G~g~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~ 179 (402)
T TIGR00897 110 LFYGIRGLGY-PLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSAL 179 (402)
T ss_pred HHHHHHHcch-HHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 2222222222 12233344567788899999999999999999986 578988889888888655544433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.7e-11 Score=116.41 Aligned_cols=156 Identities=12% Similarity=0.022 Sum_probs=118.9
Q ss_pred hhchhchhhhHHHHHHh---cCCCchh-HHHHHHHHHHHHHhhhHHHHhhcc-cCCchHHHHhhHHHHHHHHHHHHHHHh
Q psy8366 310 IASLQPMRPFLVEIFRT---FGLPMKS-EWVLVLTGILSITGSFVSTITVNK-LGKRGMTLWSTGINTFFTLMLSICAMN 384 (513)
Q Consensus 310 ~~~~~~~~~~~~~~~~~---~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (513)
..+++.+..+++.|+++ +|++..+ +.......++..++++++|+++|| +|||+.+.++..+.+++.+++....
T Consensus 23 ~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~-- 100 (475)
T TIGR00924 23 RFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSI-- 100 (475)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcc--
Confidence 33456667788888764 6888766 788889999999999999999999 8999999999999888877766532
Q ss_pred cCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhh---hhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHH
Q psy8366 385 LQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQV---RGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFI 461 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 461 (513)
+.+...+...+.+.+ .....+...+++.+.+|+++ |+.+.++.+...++|..++|.+.+.+.+..||+..|.+
T Consensus 101 ---~~~~~~~~~~l~g~g-~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~ 176 (475)
T TIGR00924 101 ---YPDLIFYGLGTIAVG-SGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNL 176 (475)
T ss_pred ---cHhHHHHHHHHHHhc-cccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 223222233233222 23345666678888888654 88899999999999999999999999999999999888
Q ss_pred HHHHHHHHHh
Q psy8366 462 YTLVSFLGFI 471 (513)
Q Consensus 462 ~~~~~~~~~~ 471 (513)
.++..+++.+
T Consensus 177 ~~~~~~~~~l 186 (475)
T TIGR00924 177 AAVGMVIGLL 186 (475)
T ss_pred HHHHHHHHHH
Confidence 7765555443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.7e-11 Score=116.19 Aligned_cols=146 Identities=13% Similarity=0.090 Sum_probs=108.2
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHh---c-hhHHHHHHHHHHhhcccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYL---A-ETVSIIMLGTVCMGLSVG 150 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~l~G~g~~ 150 (513)
+++|.+......+.....+...++.+++|+++||+|||+.+..+.++..++.+.... . ++.+.+++..++.|++.+
T Consensus 279 ~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 358 (438)
T PRK09952 279 QNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHD 358 (438)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 567888776666666666777888999999999999999988887766555433322 2 234455556777788888
Q ss_pred ccccchhhhhhccCCccccchhhhHhh-HHHHHHHHHHHHHhhhH------hHHHHHHhhhHHHHHHHHHHHhccCc
Q psy8366 151 CCEAPIISYIGEISEPRMRGSLSLFAG-AACNFGVFIIFLIYALT------DWRTTVLISAIFPILTMIMIAFIPES 220 (513)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~lG~~~~~~l~~~~------~wr~~f~~~~~~~~~~~~~~~~~~e~ 220 (513)
...+...+++.|.+|.+.|+...++.. .+..+|..++|.+...+ +|+..+...++..++..+..+.++|+
T Consensus 359 ~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 359 MVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 888888899999999999988888854 34446777777665543 48888888888888777766666764
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-10 Score=108.62 Aligned_cols=181 Identities=15% Similarity=0.121 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHH
Q psy8366 297 PFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFF 374 (513)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 374 (513)
+.+....+.+...+..........+.+-+ ++|++..+ ++..++..++..+.++..|++.||+|.|+.+.++..+..+.
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~ 113 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIP 113 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 34444444444444444455555555544 68898887 88888899999999999999999999999999988888877
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhh----
Q psy8366 375 TLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLT---- 450 (513)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~---- 450 (513)
.+.+.+......++.+..+++-.+.+.+ .+..+.....+++.+|+++||++.|+....+++|..+++.+.+.+.
T Consensus 114 ~~~~~~a~~~~~~s~~~lli~r~l~Gig--g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l 191 (462)
T PRK15034 114 CVWLGIAVQNPNTPFGIFIVIALLCGFA--GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPV 191 (462)
T ss_pred HHHHHHHHcccCCCHHHHHHHHHHHHHH--HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 7766654100111333333333333333 3345666688999999999999999998777777776665554433
Q ss_pred -h-------------ccchhHHHHHHHHHHHHHHhheeEEccc
Q psy8366 451 -S-------------WFGLHGTLFIYTLVSFLGFIYIYFYVPE 479 (513)
Q Consensus 451 -~-------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (513)
+ ..+++.+.++...+.++..++.++..++
T Consensus 192 ~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~ 234 (462)
T PRK15034 192 FAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND 234 (462)
T ss_pred HHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2 2345666667776666666555544443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-11 Score=117.38 Aligned_cols=147 Identities=15% Similarity=0.063 Sum_probs=122.4
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhcccccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEA 154 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~ 154 (513)
+.+|.+..+.|++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.+.++.++.|++.+...+
T Consensus 252 ~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 331 (417)
T PRK10489 252 EVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSL 331 (417)
T ss_pred hccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999999999999999998888888888888888888888888888888899999999887777
Q ss_pred chhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh----HhHHHHHHhhhHHHHHHHH-HHHhccCch
Q psy8366 155 PIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL----TDWRTTVLISAIFPILTMI-MIAFIPESP 221 (513)
Q Consensus 155 ~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----~~wr~~f~~~~~~~~~~~~-~~~~~~e~p 221 (513)
...+++.|..|++.||++.+++.....+|..+|+.+.+. .|++..+++.+...++..+ ....+++.+
T Consensus 332 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 332 LQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 788899999999999999999988777777776666554 4778888877766655544 455566653
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-11 Score=117.57 Aligned_cols=134 Identities=19% Similarity=0.186 Sum_probs=103.2
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHH--HHHHh--chhHHHHHHHHHHhhcccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGW--ILLYL--AETVSIIMLGTVCMGLSVG 150 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~--~~~~~--~~~~~~l~~~r~l~G~g~~ 150 (513)
+++|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+..+..+.. ++..+ .++.+.+++..++.|++.+
T Consensus 248 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 327 (394)
T TIGR00883 248 QTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGG 327 (394)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999998776555444333 22222 2467777788899999998
Q ss_pred ccccchhhhhhccCCccccchhhhHh-hHHHHHHHHHHHHHhhh----Hh-HHHHHHhhhHHHH
Q psy8366 151 CCEAPIISYIGEISEPRMRGSLSLFA-GAACNFGVFIIFLIYAL----TD-WRTTVLISAIFPI 208 (513)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~lG~~~~~~l~~~----~~-wr~~f~~~~~~~~ 208 (513)
...+...+++.|.+|+++|+++.++. ..+..+|..++|.+++. .+ |++.++..++..+
T Consensus 328 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 328 MYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 89999999999999999999998874 45555666666655544 35 8887776665544
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.8e-11 Score=116.49 Aligned_cols=147 Identities=16% Similarity=0.144 Sum_probs=109.6
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhch--h-HH-HHHHHHHHhhcccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAE--T-VS-IIMLGTVCMGLSVG 150 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~-~~-~l~~~r~l~G~g~~ 150 (513)
+++|.+....++......+...++.++.|+++||+|||+.++.+.++.+++.++.+... + .+ ....+.++.+++.+
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (479)
T PRK10077 299 KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA 378 (479)
T ss_pred HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence 67788877777777788888999999999999999999999999999988887765432 1 11 22233444444444
Q ss_pred c-cccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhh----------hHhHHHHHHhhhHHHHHHHHH-HHhcc
Q psy8366 151 C-CEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYA----------LTDWRTTVLISAIFPILTMIM-IAFIP 218 (513)
Q Consensus 151 ~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~----------~~~wr~~f~~~~~~~~~~~~~-~~~~~ 218 (513)
. ..+....+++|.+|+++|++++++......+|..+++.+.. ..+|++.|++.+++.++..++ .++.|
T Consensus 379 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (479)
T PRK10077 379 MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 458 (479)
T ss_pred ccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence 3 33667899999999999999999999888888877644432 347888898888877777664 44567
Q ss_pred Cch
Q psy8366 219 ESP 221 (513)
Q Consensus 219 e~p 221 (513)
|+.
T Consensus 459 e~~ 461 (479)
T PRK10077 459 ETK 461 (479)
T ss_pred cCC
Confidence 763
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-09 Score=103.59 Aligned_cols=103 Identities=10% Similarity=0.089 Sum_probs=92.0
Q ss_pred HHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCcc
Q psy8366 88 GSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPR 167 (513)
Q Consensus 88 ~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~ 167 (513)
.++-+..+.+++++.+.+.|+.|+|+.+.++..++....+..-+-+ -+.+++.-.+.|+|.+..+..--.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 7778888899999999999999999999999999998877766654 667788999999999999999999999999999
Q ss_pred ccchhhhHhhHHHHHHHHHHHHHh
Q psy8366 168 MRGSLSLFAGAACNFGVFIIFLIY 191 (513)
Q Consensus 168 ~r~~~~~~~~~~~~lG~~~~~~l~ 191 (513)
++.+..++.......+.++|+.+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhh
Confidence 999999999988888888887663
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=4e-11 Score=118.57 Aligned_cols=149 Identities=10% Similarity=0.016 Sum_probs=113.6
Q ss_pred hcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHh
Q psy8366 326 TFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSG 404 (513)
Q Consensus 326 ~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (513)
+++++... +.......++..++.++.|++.||+|+|+.+..+..+..++.++..... . .....+++.-++.+...
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~~~G~~~ 145 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA---G-GGIALVVFCRVIQGLAQ 145 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH---H-cCchHHHHHHHHHHHhc
Confidence 35666665 7888999999999999999999999999999988887777766554332 1 12222333333333444
Q ss_pred ccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhc-cchhHHHHHHHHHHHHHHhheeEEcc
Q psy8366 405 YGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSW-FGLHGTLFIYTLVSFLGFIYIYFYVP 478 (513)
Q Consensus 405 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 478 (513)
....+....++.|.+|+++|+++.|+.+....+|..+++.+.+.+.+. .||+..|++.+++.++..++.+.+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 220 (465)
T TIGR00894 146 GSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPA 220 (465)
T ss_pred ccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhc
Confidence 455677778999999999999999999999999999999999999988 49999999888877666554443333
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=111.39 Aligned_cols=154 Identities=15% Similarity=0.116 Sum_probs=109.5
Q ss_pred hhchhchhhhHHH-HHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCC
Q psy8366 310 IASLQPMRPFLVE-IFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQW 387 (513)
Q Consensus 310 ~~~~~~~~~~~~~-~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (513)
+........+.|. +.++.|++... ++......++..++.++.|+++||+|||+.+..+..+..++.+++.... .
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~----~ 89 (366)
T TIGR00886 14 FSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV----Q 89 (366)
T ss_pred HHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh----h
Confidence 3334556677785 55679998877 8888999999999999999999999999999999888888877665532 0
Q ss_pred CchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhc----------cchhH
Q psy8366 388 PGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSW----------FGLHG 457 (513)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~----------~g~~~ 457 (513)
+.+...+...+.+.+ + +..+....++.|.+|+++|+.+.++.....++|..+++.+.+.+... .+|+.
T Consensus 90 ~~~~~~~~~~~~g~~-~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~ 167 (366)
T TIGR00886 90 SYSVLLLLRLFIGIA-G-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGW 167 (366)
T ss_pred hHHHHHHHHHHHHHh-c-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 222222222222222 2 33344567889999999999999999988888888888777666542 36887
Q ss_pred HH-HHHHHHHHHH
Q psy8366 458 TL-FIYTLVSFLG 469 (513)
Q Consensus 458 ~~-~~~~~~~~~~ 469 (513)
.+ +..+++..+.
T Consensus 168 ~~~~~~~~~~~~~ 180 (366)
T TIGR00886 168 AFVIVPAGILLLP 180 (366)
T ss_pred hhHHHHHHHHHHH
Confidence 77 3334444333
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.7e-11 Score=111.64 Aligned_cols=150 Identities=17% Similarity=0.078 Sum_probs=116.3
Q ss_pred hhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHH
Q psy8366 317 RPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTI 395 (513)
Q Consensus 317 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (513)
.+++--++++.+-.+.. |......-.+.++.-++.+++.+|+|+-+++.+++.+..+=++.+.... ++|..+.+
T Consensus 391 ~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~-----n~W~vLPi 465 (618)
T KOG3762|consen 391 FTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ-----NPWMVLPI 465 (618)
T ss_pred HHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc-----CchheeeH
Confidence 34444445666644443 7777777788899999999999999999999999888888887777765 67766655
Q ss_pred HHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHH-HHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhh
Q psy8366 396 FCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASS-SVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIY 472 (513)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 472 (513)
=.+-+...+.. +....++++...||+.+.++.|+..... .+|-.+|+.++|.+.+.+|-+..|.++++.|++.+++
T Consensus 466 eilqgit~ali-Waa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 466 EILQGITHALI-WAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLAL 542 (618)
T ss_pred HHHHHHHHHHH-HHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence 55555554333 3444589999999999999999987765 5899999999999999999898999888888776554
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-10 Score=113.11 Aligned_cols=153 Identities=14% Similarity=0.018 Sum_probs=113.1
Q ss_pred hchhchhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcc-cCCchHHHHhhHHHHHHHHHHHHHHHhcCC
Q psy8366 311 ASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGSFVSTITVNK-LGKRGMTLWSTGINTFFTLMLSICAMNLQW 387 (513)
Q Consensus 311 ~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (513)
.+++.+..+++.|++ +.|++... .+..........+..+++|+++|| +|||+++..+..+..++.+.+.+..
T Consensus 28 ~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~----- 102 (489)
T PRK10207 28 FGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL----- 102 (489)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 345556666777765 58887766 566666776777778899999999 9999999999999999887777643
Q ss_pred CchhhHHHHHHHHHHHhccccchhhhhhccccchh--hhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHH
Q psy8366 388 PGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQ--VRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLV 465 (513)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 465 (513)
+....+.+.......+.....+...+++.|.+|++ +|+.+.++.+...++|..++|.+.|++.++.||+..|++.++.
T Consensus 103 ~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~ 182 (489)
T PRK10207 103 LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG 182 (489)
T ss_pred cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 22222222222223333345566678999999877 4588999999999999999999999999999999999886543
Q ss_pred HHH
Q psy8366 466 SFL 468 (513)
Q Consensus 466 ~~~ 468 (513)
.++
T Consensus 183 ~~~ 185 (489)
T PRK10207 183 LII 185 (489)
T ss_pred HHH
Confidence 333
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.4e-12 Score=116.61 Aligned_cols=166 Identities=12% Similarity=0.059 Sum_probs=133.1
Q ss_pred hchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhh
Q psy8366 314 QPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIP 392 (513)
Q Consensus 314 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (513)
+.+...++..-+.++.+... +++.....+...+++++.|++.||+.|++++.+|..+..++.+...+.. ..|..
T Consensus 50 ~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~-----~Fwq~ 124 (493)
T KOG1330|consen 50 YTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN-----HFWQV 124 (493)
T ss_pred hhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH-----HHHHH
Confidence 33334444443457777766 8999999999999999999999999999999999999999888887764 34443
Q ss_pred HHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHHHHHh
Q psy8366 393 LTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFG-LHGTLFIYTLVSFLGFI 471 (513)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 471 (513)
++.= .+.+.+...+.|+..++++|.+|.++|+++.++.+....+|..+|-.....+.+..+ |++.|...+++.++..+
T Consensus 125 ~l~R-~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~ 203 (493)
T KOG1330|consen 125 LLCR-GFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGL 203 (493)
T ss_pred HHHH-HHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHH
Confidence 3333 333444456778888999999999999999999999999999999888888888777 99999999999999888
Q ss_pred heeEEcccCCCCCH
Q psy8366 472 YIYFYVPETEDRTL 485 (513)
Q Consensus 472 ~~~~~~~~~~~~~~ 485 (513)
+..++.+|.+++..
T Consensus 204 L~~~f~~eP~rga~ 217 (493)
T KOG1330|consen 204 LVFLFVREPERGAR 217 (493)
T ss_pred HHHhhccCcccccc
Confidence 88888887776533
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=116.39 Aligned_cols=148 Identities=18% Similarity=0.165 Sum_probs=115.5
Q ss_pred chhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCch
Q psy8366 312 SLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGW 390 (513)
Q Consensus 312 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (513)
.........|.+.+++|.+... +.......++..++.++.|+++||+|||+.+..+..+.+++.+++.... +.+
T Consensus 35 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~ 109 (496)
T PRK03893 35 DFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP-----GYW 109 (496)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh-----HHH
Confidence 3445556677777889988876 7888888899999999999999999999999988888888777666543 333
Q ss_pred hhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHH
Q psy8366 391 IPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLV 465 (513)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 465 (513)
...+...+.+.+. .+..+....++.|.+|+++|+.+.++.+....+|..++|.+.+.+.+..||+..+.+..+.
T Consensus 110 ~l~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 110 TLFIARLVIGMGM-AGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3333333333322 3445666688999999999999999999999999999999999999999999888764433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.8e-11 Score=119.53 Aligned_cols=163 Identities=9% Similarity=0.041 Sum_probs=117.0
Q ss_pred hchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhh
Q psy8366 314 QPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIP 392 (513)
Q Consensus 314 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (513)
..+....|.+.+++|.+..+ ++..+...++..++.++.|+++||+|+|+.+..+..+.+++.+.+.........+.+..
T Consensus 46 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 125 (467)
T PRK09556 46 KNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLM 125 (467)
T ss_pred cChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 34445577777889998877 88888999999999999999999999999998888887777666655321111123333
Q ss_pred HHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcc---chhHHHHHHHHHHHHH
Q psy8366 393 LTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWF---GLHGTLFIYTLVSFLG 469 (513)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~ 469 (513)
++.-.+.+.+. ....+....++.|.+|+++||.++|+.+....+|.++++.+...+.+.. +|+..|.+.+++.++.
T Consensus 126 ~~~r~l~G~~~-~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~ 204 (467)
T PRK09556 126 IALWALSGFFQ-STGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALII 204 (467)
T ss_pred HHHHHHHHHHH-hccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHH
Confidence 33333333333 3345666789999999999999999999999999999998877666543 4777777766666555
Q ss_pred HhheeEEc
Q psy8366 470 FIYIYFYV 477 (513)
Q Consensus 470 ~~~~~~~~ 477 (513)
.++.+++.
T Consensus 205 ~i~~~~~~ 212 (467)
T PRK09556 205 GFIGLRYG 212 (467)
T ss_pred HHHHHHhC
Confidence 44444333
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=106.57 Aligned_cols=170 Identities=16% Similarity=0.124 Sum_probs=129.1
Q ss_pred HHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHH
Q psy8366 305 FFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAM 383 (513)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 383 (513)
.+...+.....+....+.+-+++++|+.+ +++..+..+.+.+.++..|.+.||+|.|+....+.++..+-++.+.+...
T Consensus 22 af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~ 101 (417)
T COG2223 22 AFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT 101 (417)
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHcc
Confidence 33333333444445555555789999988 89999999999999999999999999999999999888888777777651
Q ss_pred hcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccc---hhHHHH
Q psy8366 384 NLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFG---LHGTLF 460 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g---~~~~~~ 460 (513)
..+.+..+++..+++.+ .+...+....+++.+|++++|.+.|+.. .+|+|..+...+.+.+....| |+....
T Consensus 102 --~~~~~~ll~~gll~G~~--GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~ 176 (417)
T COG2223 102 --YPSTWQLLVIGLLLGLA--GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAG 176 (417)
T ss_pred --CCchHHHHHHHHHHhcc--cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 11122333333333333 3555666689999999999999999999 999999999999999999988 888888
Q ss_pred HHHHHHHHHHhheeEEccc
Q psy8366 461 IYTLVSFLGFIYIYFYVPE 479 (513)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~ 479 (513)
+.....++..+..++..++
T Consensus 177 i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 177 IYVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 8888877777766655543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.8e-11 Score=118.24 Aligned_cols=146 Identities=14% Similarity=0.108 Sum_probs=107.0
Q ss_pred chh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccc
Q psy8366 331 MKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLP 409 (513)
Q Consensus 331 ~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (513)
... ++..++..++..++.++.|+++||+|||+.+..+..+..++.++..... ...+.+..++.-.+.+.+. ....+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~l~G~~~-~~~~~ 146 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA--FALSVEMLIVGRVLLGIGV-GIASA 146 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--cccchHHHHHHHHHHHhhh-hHHHh
Confidence 444 7888999999999999999999999999999988888887776665433 1111112333333333332 34456
Q ss_pred hhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHh---hhhhhccchhHHHHHHHHHHHHHHhheeEEcccC
Q psy8366 410 LPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTY---INLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPET 480 (513)
Q Consensus 410 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~---g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (513)
....++.|.+|+++|+.+.++.+....+|..+++.+. +...+..||+..|++.+...++..+. .++.+++
T Consensus 147 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~-~~~l~~~ 219 (481)
T TIGR00879 147 LVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLG-LFFLPES 219 (481)
T ss_pred HHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHH-HhcCCCC
Confidence 6678999999999999999999999999999999998 66667789999988866555554443 3344543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=4e-10 Score=111.64 Aligned_cols=153 Identities=10% Similarity=0.002 Sum_probs=106.7
Q ss_pred chhchhhhHHHHH-HhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcc-cCCchHHHHhhHHHHHHHHHHHHHHHhcCCC
Q psy8366 312 SLQPMRPFLVEIF-RTFGLPMKS-EWVLVLTGILSITGSFVSTITVNK-LGKRGMTLWSTGINTFFTLMLSICAMNLQWP 388 (513)
Q Consensus 312 ~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (513)
+++.+..+++.++ +++|++... +..............+++|+++|| +|||+.+..+..+..++..++.... +
T Consensus 36 ~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~-----~ 110 (500)
T PRK09584 36 GYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG-----H 110 (500)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-----c
Confidence 3555666777777 468888765 455545444445555789999999 5999999999888888776665432 2
Q ss_pred chhhH-HHHHHHHHHHhccccchhhhhhccccchh--hhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHH
Q psy8366 389 GWIPL-TIFCTCFWVSGYGMLPLPWMLLSEVFPLQ--VRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLV 465 (513)
Q Consensus 389 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 465 (513)
....+ +...+.+.+. ....+...++..|.+|++ .++.+.++.+...++|..++|.+.|++.+..||+..|.+.++.
T Consensus 111 ~~~~l~~~~~l~gig~-g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~ 189 (500)
T PRK09584 111 DAGIVYMGMATIAVGN-GLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVG 189 (500)
T ss_pred cHHHHHHHHHHHHHhh-hcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 22222 2222222222 334456667889998754 3456888899999999999999999999999999999887754
Q ss_pred HHHHH
Q psy8366 466 SFLGF 470 (513)
Q Consensus 466 ~~~~~ 470 (513)
.+++.
T Consensus 190 ~~i~~ 194 (500)
T PRK09584 190 MLITV 194 (500)
T ss_pred HHHHH
Confidence 44433
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.5e-11 Score=96.52 Aligned_cols=134 Identities=16% Similarity=0.219 Sum_probs=102.1
Q ss_pred HHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccc
Q psy8366 339 LTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEV 418 (513)
Q Consensus 339 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (513)
...++.+++.++.+++.||++||+.+..+..+..++.+.+.... +.+.......+.+... ....+....+..|.
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~ 79 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS-----NITVLIIARFLQGFGA-AFALVAGAALIADI 79 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 45677888999999999999999999888777777766555432 3333333333333333 33456667889999
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeEEcc
Q psy8366 419 FPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVP 478 (513)
Q Consensus 419 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 478 (513)
+|+++|+++.++.+....++..++|.+.+.+.+..+++..+.+.+.+.++..+......+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 80 YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999889888888888777776665554444
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.8e-10 Score=107.46 Aligned_cols=150 Identities=14% Similarity=0.170 Sum_probs=109.4
Q ss_pred hHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHH
Q psy8366 319 FLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFC 397 (513)
Q Consensus 319 ~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (513)
..+....+.+.+... ++......+...+..++.|+++||+|||+.+..+..+.+++.+.+.... +. .+...
T Consensus 25 ~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~-----~~---~~~r~ 96 (393)
T PRK11195 25 AAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI-----HP---LLAYG 96 (393)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH-----HH---HHHHH
Confidence 334445677766665 7888889999999999999999999999999999888877766554432 11 22222
Q ss_pred HHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeEEc
Q psy8366 398 TCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYV 477 (513)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 477 (513)
+ .+.......|...+++.|.+|+++|++++|+.+....++..+||.++|.+.+.. +...+.+.+.+.+++.+. .+..
T Consensus 97 l-~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~~~~-~~~l 173 (393)
T PRK11195 97 L-VGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLAALF-NLFI 173 (393)
T ss_pred H-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HhcC
Confidence 2 233334556888899999999999999999999999999999999999998863 555555555444443332 2344
Q ss_pred cc
Q psy8366 478 PE 479 (513)
Q Consensus 478 ~~ 479 (513)
|+
T Consensus 174 ~~ 175 (393)
T PRK11195 174 PR 175 (393)
T ss_pred CC
Confidence 44
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.4e-10 Score=107.02 Aligned_cols=156 Identities=10% Similarity=-0.094 Sum_probs=115.1
Q ss_pred hhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchh
Q psy8366 313 LQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWI 391 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
........|.+.+++|.+..+ ++..+...++..++++..|++.||+|||+.+..+..+.+++.+++..... .++.+.
T Consensus 19 ~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~--~~~~~~ 96 (410)
T TIGR00885 19 NDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE--IMNYTL 96 (410)
T ss_pred HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh--hccHHH
Confidence 344557778777889998877 88999999999999999999999999999999999998888776544321 112233
Q ss_pred hHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhc-------------------
Q psy8366 392 PLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSW------------------- 452 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~------------------- 452 (513)
.+....+.+.+. ....+....++.+..|++++++..++.+...++|..++|.+.+.+...
T Consensus 97 ~l~~~~l~G~g~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (410)
T TIGR00885 97 FLVGLFILTAGL-GFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELS 175 (410)
T ss_pred HHHHHHHHHhhH-HHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHH
Confidence 333333333333 233344456777888989999999999999999999999998877422
Q ss_pred -------cchhHHHHHHHHHHHHHHh
Q psy8366 453 -------FGLHGTLFIYTLVSFLGFI 471 (513)
Q Consensus 453 -------~g~~~~~~~~~~~~~~~~~ 471 (513)
.+|+.+|++.+++.++..+
T Consensus 176 ~~~~~~~~~w~~~fl~~a~~~~~~~~ 201 (410)
T TIGR00885 176 AIKHSDLASVQTPYMIIGAVVLAVAL 201 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588888888776665544
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.6e-10 Score=106.72 Aligned_cols=150 Identities=12% Similarity=0.003 Sum_probs=116.4
Q ss_pred hhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchh
Q psy8366 313 LQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWI 391 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
........|.+.+++|.+..+ ++..+...++..++.++.|++.||+|||+.+..+..+.+++.+...+.. +.+.
T Consensus 25 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~-----~~~~ 99 (393)
T PRK09705 25 LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYP-----QSAL 99 (393)
T ss_pred hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCc-----chHH
Confidence 345667788888889998877 8899999999999999999999999999999999999999988888754 3333
Q ss_pred hHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcc-chhHHHHHHHHHHHHH
Q psy8366 392 PLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWF-GLHGTLFIYTLVSFLG 469 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~ 469 (513)
.++.-.+.+.+. ....+....++.+.+| ++|+.++|+.......|..+++.+.+.+.+.. +|+..+.+.++..++.
T Consensus 100 ll~~r~l~Gig~-~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 100 LLSSALLGGVGI-GIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA 176 (393)
T ss_pred HHHHHHHHHhHH-HHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 333333333333 2334455567788887 78999999999999999999999999888875 7888776655554433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-09 Score=104.89 Aligned_cols=139 Identities=9% Similarity=-0.068 Sum_probs=106.6
Q ss_pred HhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCC
Q psy8366 309 IIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQW 387 (513)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (513)
..........++|.+.++.|.+..+ ++..+...++..++.++.|+++||+|||+.+..+..+.+++........
T Consensus 18 ~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~----- 92 (381)
T PRK03633 18 LTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMV----- 92 (381)
T ss_pred HHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 3344566778899999999988776 8999999999999999999999999999999998888888777665543
Q ss_pred CchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy8366 388 PGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWF 453 (513)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 453 (513)
+.+..++...+.+.+. ....+.......+..|+++|+++.+..+....+|..++|.+.+.+.+..
T Consensus 93 ~~~~l~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 157 (381)
T PRK03633 93 GFWSWLAWRFVAGIGC-AMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL 157 (381)
T ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3333333333333322 2334444455667788899999999999999999999999999887653
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-09 Score=104.07 Aligned_cols=183 Identities=10% Similarity=0.034 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhc----ccCCchHHHHh-hHH
Q psy8366 297 PFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVN----KLGKRGMTLWS-TGI 370 (513)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~-~~~ 370 (513)
+++.........++. +.....+.+.+++..|.+... +....+..+.+++..++.|+++| |+|||+.++.+ ...
T Consensus 5 ~li~~~~~~~Giq~~-~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~ 83 (477)
T TIGR01301 5 KLLRVASVAAGVQFG-WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAAL 83 (477)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHH
Confidence 334444444444443 556667777788889998776 78888999999999999999999 59999988765 444
Q ss_pred HHHHHHHHHHHHHhc--------CCC-c---hhhHHHHHHHHHHHhccccchhhhhhccccchhhh--hHHHHHHHHHHH
Q psy8366 371 NTFFTLMLSICAMNL--------QWP-G---WIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVR--GIASGITAASSS 436 (513)
Q Consensus 371 ~~~~~~~~~~~~~~~--------~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~ 436 (513)
..+++.++.+..... ... . +..++.+.+...... ...+...+++.|..|+++| +.+.+..+...+
T Consensus 84 ~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n-~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~ 162 (477)
T TIGR01301 84 VAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANN-MLQGPCRAFLADLTGGDARRTRIANAYFSFFMA 162 (477)
T ss_pred HHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccccCchhHHHHHHHHHHHHHHH
Confidence 444444444322100 000 1 111222222222222 2334445899999998765 679999999999
Q ss_pred HHHHHHHHHhhhh--hhcc-------------chhHHHHHHHHHHHHHHhheeEEcccCC
Q psy8366 437 VVNFISTKTYINL--TSWF-------------GLHGTLFIYTLVSFLGFIYIYFYVPETE 481 (513)
Q Consensus 437 ~g~~~~~~~~g~l--~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (513)
+|+.+++.+.+.. .+.. +.+..|++.+++.+++.++..+..+|..
T Consensus 163 lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 163 IGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 9999999888764 2211 4667888888888888888777777754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.7e-10 Score=107.30 Aligned_cols=137 Identities=11% Similarity=0.090 Sum_probs=110.5
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhcccccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEA 154 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~ 154 (513)
+|.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..++.|++.+...+
T Consensus 233 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 312 (382)
T PRK11128 233 QAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHL 312 (382)
T ss_pred HHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999888888899999999999999999998888
Q ss_pred chhhhhhccCCccccchhhhHhh-HHHHHHHHHHHHHh----hhHhHHHHHHhhhHHHHHHHHH
Q psy8366 155 PIISYIGEISEPRMRGSLSLFAG-AACNFGVFIIFLIY----ALTDWRTTVLISAIFPILTMIM 213 (513)
Q Consensus 155 ~~~~~~~~~~~~~~r~~~~~~~~-~~~~lG~~~~~~l~----~~~~wr~~f~~~~~~~~~~~~~ 213 (513)
....++.+. +++++++..+... ....+|..+|+.++ +.+++ ..|+..+++.++.+++
T Consensus 313 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 313 AAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 888888887 5666788888775 43445545555554 44476 4666666666555443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-09 Score=94.96 Aligned_cols=173 Identities=17% Similarity=0.188 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhh
Q psy8366 34 FTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKR 113 (513)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~ 113 (513)
|+............|.... .+..-|++. +.+|+|.+|...+.+.-.+|..+ +++.|.+.|++|++.
T Consensus 2 W~~l~a~~~v~~~~Gt~Y~-Fs~yS~~Lk------------~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~ 67 (250)
T PF06813_consen 2 WLSLVASIWVQLCSGTTYT-FSAYSPQLK------------SRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWV 67 (250)
T ss_pred hhhHHHHHHHHHhcCcccc-hhhhhHHHH------------HHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHH
Confidence 3444444455555554433 345668888 89999999999999999999986 588899999999999
Q ss_pred HHHHHhHHHHHHHHHHHhc-------hhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHH
Q psy8366 114 LMILVGFPFFLGWILLYLA-------ETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFI 186 (513)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~ 186 (513)
++.+|.+...+|..+...+ .++|.+.+..++.|.+.+...+++.....+.+| ++||++.++.-...+++..+
T Consensus 68 ~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai 146 (250)
T PF06813_consen 68 VLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAI 146 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHH
Confidence 9999999999998887543 468899999999999988777777777778886 58999999999999998877
Q ss_pred HHHHhhhH----hHHHHHHhhhHHHHHHHHHHHhccCch
Q psy8366 187 IFLIYALT----DWRTTVLISAIFPILTMIMIAFIPESP 221 (513)
Q Consensus 187 ~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p 221 (513)
-..+...+ .-+..+.....+.++.++..++++..|
T Consensus 147 ~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 147 FTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 66665544 233444444444455555555554443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.6e-10 Score=110.03 Aligned_cols=144 Identities=15% Similarity=0.001 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCC---chhhHHHHHHHHHHHhccccch
Q psy8366 334 EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWP---GWIPLTIFCTCFWVSGYGMLPL 410 (513)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 410 (513)
++......++.+++.++.|+++||+|||+.+..+.++..++.++..... ...+ .+..++.-.+.+.+. .+..+.
T Consensus 59 ~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~r~l~G~~~-g~~~~~ 135 (502)
T TIGR00887 59 AAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSP--GSSPKSVMATLCFWRFWLGVGI-GGDYPL 135 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcc--CcccchHHHHHHHHHHHHHHHH-hhhhHH
Confidence 6778888999999999999999999999999988888888776655432 0001 122222233333333 344567
Q ss_pred hhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh-----------------------ccchhHHHHHHHHHHH
Q psy8366 411 PWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTS-----------------------WFGLHGTLFIYTLVSF 467 (513)
Q Consensus 411 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-----------------------~~g~~~~~~~~~~~~~ 467 (513)
...++.|.+|++.|+++.++.+....+|..+++.+...+.. ..+|+..+.+.++..+
T Consensus 136 ~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~ 215 (502)
T TIGR00887 136 SAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPAL 215 (502)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHH
Confidence 77999999999999999999999999999998887665432 1368888876665555
Q ss_pred HHHhheeEEcccCC
Q psy8366 468 LGFIYIYFYVPETE 481 (513)
Q Consensus 468 ~~~~~~~~~~~~~~ 481 (513)
+..+ ..++.||..
T Consensus 216 i~~~-~~~~lpESp 228 (502)
T TIGR00887 216 LALY-FRLTIPETP 228 (502)
T ss_pred HHHH-HHHhCCCCH
Confidence 4444 334567753
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.9e-10 Score=110.08 Aligned_cols=147 Identities=14% Similarity=0.132 Sum_probs=126.6
Q ss_pred hhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhH
Q psy8366 56 VVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETV 135 (513)
Q Consensus 56 ~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 135 (513)
.++|.+.+ +++|.+....|++.+++.+|..++++..+++.+|+++++.+..+.++++++.+..+++++.
T Consensus 239 aLlPl~a~-----------~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~ 307 (524)
T PF05977_consen 239 ALLPLFAR-----------DVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSF 307 (524)
T ss_pred HhhhHHHH-----------HHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHH
Confidence 45777763 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHH----HHHHhhhHhHHHHHHhhhHHHHHHH
Q psy8366 136 SIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFI----IFLIYALTDWRTTVLISAIFPILTM 211 (513)
Q Consensus 136 ~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~----~~~l~~~~~wr~~f~~~~~~~~~~~ 211 (513)
+..++.-++.|++.....+...+.+.+..|++.|||+++++.+....+..+ .+.++..+|-+..+.+.++..++..
T Consensus 308 ~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~ 387 (524)
T PF05977_consen 308 WLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSA 387 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 999999999999999888888899999999999999999987776655544 4555555688888888776655555
Q ss_pred HH
Q psy8366 212 IM 213 (513)
Q Consensus 212 ~~ 213 (513)
++
T Consensus 388 ~~ 389 (524)
T PF05977_consen 388 LI 389 (524)
T ss_pred HH
Confidence 53
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=4e-10 Score=109.06 Aligned_cols=136 Identities=12% Similarity=0.136 Sum_probs=110.2
Q ss_pred ccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchh
Q psy8366 78 ILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPII 157 (513)
Q Consensus 78 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~ 157 (513)
+.+....|.+.++..+...++.+..|++.||+|||+.+.++.++.+++..+...+++.+.+++.++++|++.+.......
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566789999999999999999999999999999999999999999888878888999999999999998776666666
Q ss_pred hhhhccCCccccchhhhH-hhHHHHHHHHHHHHHhh----hHhHHHHHHhhhHHHHHHHHH
Q psy8366 158 SYIGEISEPRMRGSLSLF-AGAACNFGVFIIFLIYA----LTDWRTTVLISAIFPILTMIM 213 (513)
Q Consensus 158 ~~~~~~~~~~~r~~~~~~-~~~~~~lG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~ 213 (513)
.+..+..+++.++...+. .+....+|..+++.+++ ..||+..|.+.+++.++..++
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 677777888888776655 45666666666665544 448999999988887766553
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.3e-10 Score=111.42 Aligned_cols=134 Identities=15% Similarity=0.097 Sum_probs=110.7
Q ss_pred HHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhH--HHHHHHHHHhhccccccccchhhhhhccCC
Q psy8366 88 GSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETV--SIIMLGTVCMGLSVGCCEAPIISYIGEISE 165 (513)
Q Consensus 88 ~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~ 165 (513)
..+..+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+..++....+..|.+|
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 334456677888999999999999999999999999988888777654 555566677777777788888999999999
Q ss_pred ccccchhhhHhhHHHHHHHHHHHHHhhhH--hHHHHHHhhhHHHHHHHHHHHhccCch
Q psy8366 166 PRMRGSLSLFAGAACNFGVFIIFLIYALT--DWRTTVLISAIFPILTMIMIAFIPESP 221 (513)
Q Consensus 166 ~~~r~~~~~~~~~~~~lG~~~~~~l~~~~--~wr~~f~~~~~~~~~~~~~~~~~~e~p 221 (513)
.+.|++++++......+|.+++|.+.... ++..++++.+...++..++.+++||+.
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 99999999999999999999999887732 567788888888888777777889873
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-09 Score=105.12 Aligned_cols=162 Identities=11% Similarity=0.021 Sum_probs=105.3
Q ss_pred hhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhc-CCCch
Q psy8366 313 LQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNL-QWPGW 390 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 390 (513)
.+.+..+.+.+.+++|++..+ +....+. .......++.|++.||+|+|+.+.++.++..++.++..+..... ..+.+
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~ 121 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVV 121 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHH
Confidence 445566777777789998776 5555442 23334566789999999999999999999999988877752100 01222
Q ss_pred hhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHH
Q psy8366 391 IPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGF 470 (513)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 470 (513)
...+...+.+.+. ....+.....+.+.+| ++||.+.|+......+|+++.+.+...+.. .++...+++.+++.++..
T Consensus 122 ~l~l~r~l~G~G~-~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ 198 (591)
T PTZ00207 122 RLSVYNGLMTLGC-MLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVG 198 (591)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHH
Confidence 2222222222222 2233444466777887 789999999999999999875555555444 356667777777666655
Q ss_pred hheeEEcc
Q psy8366 471 IYIYFYVP 478 (513)
Q Consensus 471 ~~~~~~~~ 478 (513)
++.+.+.+
T Consensus 199 ll~~~~vr 206 (591)
T PTZ00207 199 ILAIVFMR 206 (591)
T ss_pred HHHHhhee
Confidence 55444443
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.7e-10 Score=103.17 Aligned_cols=124 Identities=12% Similarity=0.105 Sum_probs=96.8
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhh----hcchhhHHH-HHhHHHHHHHHHHHhchhHH-------------
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLE----YIGRKRLMI-LVGFPFFLGWILLYLAETVS------------- 136 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~~~-~~~~~~~~~~~~~~~~~~~~------------- 136 (513)
.+.|++....+.+.-..-+...+.+|+.|..+| ||||||.++ .+.+...++.++..++.++.
T Consensus 60 ~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ 139 (498)
T KOG0637|consen 60 QSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKP 139 (498)
T ss_pred HHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccch
Confidence 467778888888888888888899999999999 599998855 45556677777777776543
Q ss_pred ----HHHHHHHHhhccccccccchhhhhhccCCccccch-hhhHhhHHHHHHHHHHHHHhhhHhHHH
Q psy8366 137 ----IIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGS-LSLFAGAACNFGVFIIFLIYALTDWRT 198 (513)
Q Consensus 137 ----~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~lG~~~~~~l~~~~~wr~ 198 (513)
+++++--+.=+..-.....+-+++.|...++++.+ +++.+.....+|..+|..++.+.+|+-
T Consensus 140 rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~~ 206 (498)
T KOG0637|consen 140 RAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLYK 206 (498)
T ss_pred HHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCceE
Confidence 34445555555666778888899999987666666 999999999999999999988877664
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-09 Score=102.08 Aligned_cols=160 Identities=15% Similarity=0.057 Sum_probs=108.4
Q ss_pred hhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhccc-----CCchHH-HHhhHHHHHHHHHHHHHHHhcCCC
Q psy8366 316 MRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKL-----GKRGMT-LWSTGINTFFTLMLSICAMNLQWP 388 (513)
Q Consensus 316 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 388 (513)
...-.|.+.++.|++..+ +..... .+...+ .++.|+++||+ ||||.+ ..+..+.+++...+.+.. +..
T Consensus 7 ~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~---~~~ 81 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV---PST 81 (356)
T ss_pred HHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC---cch
Confidence 345677788889998877 655433 344343 88999999998 788875 455555555544444321 111
Q ss_pred chhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccc--------hhHHHH
Q psy8366 389 GWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFG--------LHGTLF 460 (513)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--------~~~~~~ 460 (513)
....+....+..........+...+++.|.+|+++|+.+.|+......+|..+++.+.+.+.+..| |+..|+
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~ 161 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFF 161 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHH
Confidence 221222222222222233346666889999999999999999999999999999999999988888 999998
Q ss_pred HHHHHHHHHHhheeEEcccC
Q psy8366 461 IYTLVSFLGFIYIYFYVPET 480 (513)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~ 480 (513)
+.++..++..++.++..+|.
T Consensus 162 i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 162 WTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHHHHHHHhccCC
Confidence 88887776665544344554
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-09 Score=105.65 Aligned_cols=145 Identities=11% Similarity=-0.006 Sum_probs=93.0
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHH--h--chhHHHHHHHHHHhhcccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLY--L--AETVSIIMLGTVCMGLSVG 150 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~--~--~~~~~~l~~~r~l~G~g~~ 150 (513)
+++|.+..+.++..++..++..+++++.|+++||+|||+.+.++.++.++..+... . .++....+..-++.+++.+
T Consensus 272 ~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (432)
T PRK10406 272 NTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVS 351 (432)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 56788888999999998888899999999999999999988776665443332221 1 2233322222222223333
Q ss_pred ccccchhhhhhccCCccccchhhhHhhHHHHH-HHHHHHHHhhhH---h-HHHHHHhhhHHHHHHHHHHHhccC
Q psy8366 151 CCEAPIISYIGEISEPRMRGSLSLFAGAACNF-GVFIIFLIYALT---D-WRTTVLISAIFPILTMIMIAFIPE 219 (513)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l-G~~~~~~l~~~~---~-wr~~f~~~~~~~~~~~~~~~~~~e 219 (513)
...+....+.+|++|++.|+.+.|+......+ .....+.+...+ + |...++..++..++..+..+++++
T Consensus 352 ~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~~ 425 (432)
T PRK10406 352 FYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHR 425 (432)
T ss_pred HHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 33445667889999999999999998765443 222344544433 3 555666666666666555555444
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-09 Score=102.66 Aligned_cols=167 Identities=13% Similarity=0.122 Sum_probs=117.4
Q ss_pred HHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhccc-----CCch-HHHHhhHHHHHHHHHHHH
Q psy8366 308 TIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKL-----GKRG-MTLWSTGINTFFTLMLSI 380 (513)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~-~~~~~~~~~~~~~~~~~~ 380 (513)
.+.........-+|.++++.|++.++ +++..+... .+..++.|+++||+ |||| .+..+..+.+++...+.+
T Consensus 10 ~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~ 87 (402)
T PRK11902 10 ASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAF 87 (402)
T ss_pred HHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHh
Confidence 33344556667889999999999887 766555443 58889999999999 7765 577777777666665554
Q ss_pred HHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhc-cchhHHH
Q psy8366 381 CAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSW-FGLHGTL 459 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~ 459 (513)
.. .......+....+..........+...+++.|..|+++|+.+.++......+|..+++.+.+.+.+. .||+..|
T Consensus 88 ~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f 164 (402)
T PRK11902 88 CP---PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTY 164 (402)
T ss_pred cC---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHH
Confidence 32 1122222222222222333345566678999999999999999999999999999999999988885 4899999
Q ss_pred HHHHHHHHHHHhheeEEcccC
Q psy8366 460 FIYTLVSFLGFIYIYFYVPET 480 (513)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~ 480 (513)
++.+++.++..+.. +..+|+
T Consensus 165 ~i~a~~~l~~~l~~-~~~~e~ 184 (402)
T PRK11902 165 LLMAGLMLAGALTT-LWAPEP 184 (402)
T ss_pred HHHHHHHHHHHHHH-HhcCCC
Confidence 98887776655433 334443
|
|
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-08 Score=95.99 Aligned_cols=146 Identities=12% Similarity=0.153 Sum_probs=110.6
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhch---hHH------HHHHHHHHh
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAE---TVS------IIMLGTVCM 145 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~---~~~------~l~~~r~l~ 145 (513)
.+-|++..+..++.....+...+..+++..+.||+|||+.++.+..+..+..+++.... +.. ..+++.++.
T Consensus 298 ~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~ 377 (485)
T KOG0569|consen 298 KTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLF 377 (485)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 67789999999999999999999999999999999999999999999988888876542 111 123344333
Q ss_pred hccccc-cccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHH----hhhHhHHHHHHhhhHHHHHHHH-HHHhccC
Q psy8366 146 GLSVGC-CEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLI----YALTDWRTTVLISAIFPILTMI-MIAFIPE 219 (513)
Q Consensus 146 G~g~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l----~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e 219 (513)
.++.+. ..|...-+.+|.+|++.|+.++++......+...+-+.. ...+|- +.|++..++.++..+ ++.++||
T Consensus 378 ~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPE 456 (485)
T KOG0569|consen 378 IISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPE 456 (485)
T ss_pred HHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcc
Confidence 333332 467788889999999999999999988887776665443 333444 667777777766666 6777999
Q ss_pred ch
Q psy8366 220 SP 221 (513)
Q Consensus 220 ~p 221 (513)
|.
T Consensus 457 Tk 458 (485)
T KOG0569|consen 457 TK 458 (485)
T ss_pred cC
Confidence 83
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.2e-10 Score=102.27 Aligned_cols=142 Identities=13% Similarity=0.096 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhh
Q psy8366 334 EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWM 413 (513)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (513)
|+++....+.+++.+++.|.+.||+|+|..+++|+.++..+.+++.+.. .+..+++.=...+...........+
T Consensus 109 G~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~------sy~~l~vAR~LQgvgsA~~~tsgla 182 (464)
T KOG3764|consen 109 GLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN------SYPMLFVARSLQGVGSAFADTSGLA 182 (464)
T ss_pred hHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc------hhHHHHHHHHHhhhhHHHHHhhhHH
Confidence 8999999999999999999999999999999999999999999888764 3333444434444444444556668
Q ss_pred hhccccchhh-hhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeEEcccCC
Q psy8366 414 LLSEVFPLQV-RGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETE 481 (513)
Q Consensus 414 ~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (513)
++++.+|.+. |++++|+...+..+|-.+||.++|.+++..|++.+|++.+.++++...+.++..+.++
T Consensus 183 mlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~ 251 (464)
T KOG3764|consen 183 MLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE 251 (464)
T ss_pred HHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence 9999999865 6999999999999999999999999999999999999999999998777666655443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-08 Score=96.43 Aligned_cols=155 Identities=7% Similarity=-0.040 Sum_probs=114.7
Q ss_pred chhhhHHHHHHhcCCCchh--HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhh
Q psy8366 315 PMRPFLVEIFRTFGLPMKS--EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIP 392 (513)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (513)
....-.|.+.+++|++..+ +.+...+..+..+..+.+|+++||+|.|+.+.++.+...+..+++.+.. +.+..
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~-----Sl~~L 118 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT-----SVWHM 118 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 3445566666789998876 7889999999999999999999999999999999999998888888764 33333
Q ss_pred HHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHH---HHHHHHHHHHH
Q psy8366 393 LTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGT---LFIYTLVSFLG 469 (513)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~---~~~~~~~~~~~ 469 (513)
.+.-++.+.+- .... ..+.++...+|+++|+++.|+.+....+|.++++.+.+. ....||+.. ..+..+...++
T Consensus 119 ~i~R~llGvaE-A~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a 195 (511)
T TIGR00806 119 QLMEVFYSVTM-AARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFS 195 (511)
T ss_pred HHHHHHHHHHH-HHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHH
Confidence 33333333333 3333 666899999999999999999999999999999999999 555676653 23333333344
Q ss_pred HhheeEEcc
Q psy8366 470 FIYIYFYVP 478 (513)
Q Consensus 470 ~~~~~~~~~ 478 (513)
.++.+ ++|
T Consensus 196 ~~~a~-~LP 203 (511)
T TIGR00806 196 VFLAL-FLK 203 (511)
T ss_pred HHHHH-hCC
Confidence 44333 444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.6e-09 Score=102.20 Aligned_cols=146 Identities=14% Similarity=0.208 Sum_probs=128.8
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchh--hHHHHHhHHHHHHHHHHHh--------chhHHHHHHHHHH
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRK--RLMILVGFPFFLGWILLYL--------AETVSIIMLGTVC 144 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~l 144 (513)
+++|++..+...+.-+..+..++|++++|++.||+|.| ++++++++++.+..+...+ .++-+.+.+.-++
T Consensus 310 ~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~ 389 (477)
T PF11700_consen 310 EVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVL 389 (477)
T ss_pred HhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHH
Confidence 68999999999999999999999999999999999999 8999998888766666665 6788889999999
Q ss_pred hhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH-----hHHHHHHhhhHHHHHHHHHHHhccC
Q psy8366 145 MGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT-----DWRTTVLISAIFPILTMIMIAFIPE 219 (513)
Q Consensus 145 ~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-----~wr~~f~~~~~~~~~~~~~~~~~~e 219 (513)
.|+..|...+..-++.+|..|+++.+...|++....-....+||++.+.+ +-|+.+....++.++.+++.++++.
T Consensus 390 ~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 390 IGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999888888888886665 5888888888888888877776655
Q ss_pred c
Q psy8366 220 S 220 (513)
Q Consensus 220 ~ 220 (513)
.
T Consensus 470 ~ 470 (477)
T PF11700_consen 470 E 470 (477)
T ss_pred h
Confidence 3
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-08 Score=98.87 Aligned_cols=135 Identities=10% Similarity=-0.099 Sum_probs=98.5
Q ss_pred hhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchh
Q psy8366 313 LQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWI 391 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
......+.|.+-+++|.+..+ ++..+...++..++.++.|++.||+|||+.+..+..+..++.+++..... .++.+.
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~--a~~~~~ 119 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--IMNYTL 119 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh--cCCHHH
Confidence 455667788887789998877 88889999999999999999999999999999999999888876532210 112233
Q ss_pred hHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8366 392 PLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLT 450 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 450 (513)
.++...+.+.+.+ ...+....++.|..|++++....++.+....+|..+++.+.+.+.
T Consensus 120 ll~~r~l~G~g~g-~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 120 FLVGLFIIAAGLG-CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHH-HHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333332 334444566778777666667899999999999999998876543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-09 Score=109.16 Aligned_cols=162 Identities=14% Similarity=0.017 Sum_probs=118.9
Q ss_pred hhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcC-----
Q psy8366 313 LQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQ----- 386 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 386 (513)
......-++.+-++++++... +++.+...++..++.++.+++.||.+||+.+.++.++.+++.+++.+..+..+
T Consensus 49 ~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~ 128 (633)
T TIGR00805 49 NGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYS 128 (633)
T ss_pred HHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccc
Confidence 344445556555678888776 88889999999999999999999999999999999999999888776531100
Q ss_pred ----------------------------------------CCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhH
Q psy8366 387 ----------------------------------------WPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGI 426 (513)
Q Consensus 387 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 426 (513)
...+..+++.-++.+.+.....+...+++.|.+|+++|+.
T Consensus 129 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~ 208 (633)
T TIGR00805 129 TTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPL 208 (633)
T ss_pred ccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHH
Confidence 0012223333333333334556777789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcc---------------------c-hhHHHHHHHHHHHHHHhhee
Q psy8366 427 ASGITAASSSVVNFISTKTYINLTSWF---------------------G-LHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 427 ~~g~~~~~~~~g~~~~~~~~g~l~~~~---------------------g-~~~~~~~~~~~~~~~~~~~~ 474 (513)
..|+.+....+|..+|+.+.+.+.+.. | |+..|++.+++.++..+..+
T Consensus 209 ~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~ 278 (633)
T TIGR00805 209 YIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF 278 (633)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877532 2 56667777776666554433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-09 Score=105.21 Aligned_cols=115 Identities=17% Similarity=0.287 Sum_probs=96.4
Q ss_pred chhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhc-hhHHHHHHHHHHhhccccccccchhh
Q psy8366 80 SDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLA-ETVSIIMLGTVCMGLSVGCCEAPIIS 158 (513)
Q Consensus 80 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~g~~~~~~~~~~ 158 (513)
+..+.+++.++..++..++.+++++++||+|+|+++.++.++.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888899999999999999999999999999999888888777665 46677778889999999999999999
Q ss_pred hhhccCC-------ccccchhhhHhhHHHHHHHHHHHHHhhhH
Q psy8366 159 YIGEISE-------PRMRGSLSLFAGAACNFGVFIIFLIYALT 194 (513)
Q Consensus 159 ~~~~~~~-------~~~r~~~~~~~~~~~~lG~~~~~~l~~~~ 194 (513)
+++|..+ ++++|.+.++.+....+|..+++.+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 45678999999888888888877765543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-08 Score=99.16 Aligned_cols=159 Identities=14% Similarity=0.023 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-H-HHHHH-----HHHHHHHhhhHHHHhhcccCCchHHHHhhHHHH
Q psy8366 300 MIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-E-WVLVL-----TGILSITGSFVSTITVNKLGKRGMTLWSTGINT 372 (513)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~-~~~~~-----~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 372 (513)
....+..+....-...+....|.+.++++.+..+ + +..+. ..+...++.++.|++.||+|||+.+..+..+..
T Consensus 18 ~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~ 97 (434)
T PRK15075 18 LRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMA 97 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHH
Confidence 3333344444444556677888888888876654 3 22221 122234678999999999999999999998888
Q ss_pred HHHHHHHHHHHhcCCCchh-------hHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8366 373 FFTLMLSICAMNLQWPGWI-------PLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKT 445 (513)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 445 (513)
++.+++.+.. +.+. .+++.-++.+.......+....++.|.+|+++|+.+.++.+...++|..+++.+
T Consensus 98 ~~~~l~~~~~-----~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~ 172 (434)
T PRK15075 98 SGTLLIAFVP-----GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL 172 (434)
T ss_pred HHHHHHHhCC-----cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 8877776543 2111 111111222222122345556789999999999999999999888888777776
Q ss_pred hhhh--------hhccchhHHHHHHH
Q psy8366 446 YINL--------TSWFGLHGTLFIYT 463 (513)
Q Consensus 446 ~g~l--------~~~~g~~~~~~~~~ 463 (513)
.+.+ .+..||+.+|++..
T Consensus 173 g~~l~~~~~~~~~~~~gWr~~f~~~~ 198 (434)
T PRK15075 173 GYLLNQWLSPAQMAEWGWRIPFLIGC 198 (434)
T ss_pred HHHHHHhCCHHHHhccchHHHHHHHH
Confidence 6654 24678998887643
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.5e-09 Score=102.52 Aligned_cols=152 Identities=14% Similarity=0.135 Sum_probs=109.7
Q ss_pred hhhHHHHHHhcCCCchhHHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHH
Q psy8366 317 RPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIF 396 (513)
Q Consensus 317 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (513)
..-++.+..+.|-++...++.....+...++.++.|+++|.+|||..++.+.++..++.++..... +....+...
T Consensus 64 a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~-----~~~~~iag~ 138 (599)
T PF06609_consen 64 ASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ-----NMNTFIAGM 138 (599)
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC-----cHHHHHHHH
Confidence 344555666778766667888888899999999999999999999999999999999888777543 222333333
Q ss_pred HHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeE
Q psy8366 397 CTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYF 475 (513)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 475 (513)
.+.+.+ .+........++|..|.+.|..+.++.....-....+++.+...+....+|++.|++..+...++++..++
T Consensus 139 ~l~Gvg--aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 139 VLYGVG--AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred HHHHHh--hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 333333 34444555678999999999988877766555555567777766666678999999888877766554433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.3e-09 Score=113.34 Aligned_cols=133 Identities=9% Similarity=-0.080 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHH--HHHHHHHhcCCCchhhHHHHHHHHHHHhccccchh
Q psy8366 334 EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTL--MLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLP 411 (513)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (513)
++..++..+..++.+++.|+++||++||+++.....+..+... ++.... .+.+. +++..++.+.......|..
T Consensus 55 ~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~----~s~~~-l~~~~~l~gi~~a~~~p~~ 129 (1140)
T PRK06814 55 TLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL----NSVPL-LFAALFLMGIHSALFGPIK 129 (1140)
T ss_pred HHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHH-HHHHHHHHHHHHHhhchHH
Confidence 5666677888899999999999999999976442222222111 111111 13333 3333334344444567888
Q ss_pred hhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHh
Q psy8366 412 WMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFI 471 (513)
Q Consensus 412 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 471 (513)
.+++.+.+|+++++.++|+.++...+|..+||.++|.+.+..||+..|...+++.+++.+
T Consensus 130 ~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~ 189 (1140)
T PRK06814 130 YSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWL 189 (1140)
T ss_pred HHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999988877444444444333
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.2e-09 Score=101.66 Aligned_cols=139 Identities=14% Similarity=0.054 Sum_probs=104.6
Q ss_pred CCcccchhhHHHHHHHHhh-hhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHh------chhHHHHHHHHHHhhc
Q psy8366 75 PDLILSDEQSSWLGSILFL-FHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYL------AETVSIIMLGTVCMGL 147 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~r~l~G~ 147 (513)
+|.|.++++.|++...... ...++.++.|++.||+|+|+.+..+..+.++..+.... .++...+.....+.++
T Consensus 236 ~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (390)
T TIGR02718 236 VDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSL 315 (390)
T ss_pred HhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHH
Confidence 5679999999999888764 66677899999999999999988877766443333221 2233444555666677
Q ss_pred cccccccchhhhhhccCCc-cccchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHHHH
Q psy8366 148 SVGCCEAPIISYIGEISEP-RMRGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLISAIFPILTMIM 213 (513)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~ 213 (513)
+.+...+...+...+..++ +++++..++.+...++|..+++.+++.+ ||+..|++.+++.++..+.
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 316 ITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 7777778888887777766 8889999999988888888888776654 8889998887777665543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-08 Score=100.00 Aligned_cols=162 Identities=14% Similarity=0.120 Sum_probs=110.8
Q ss_pred hhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhccc-----CCchH-HHHhhHHHHHHHHHHHHHHHhc
Q psy8366 313 LQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKL-----GKRGM-TLWSTGINTFFTLMLSICAMNL 385 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 385 (513)
........|.++++.|.+..+ +.. ...+.. .++.++.++++||+ |||+. +..+..+..++...+.+.. +
T Consensus 28 ~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~--~ 103 (491)
T PRK11010 28 LALTSGTLQAWMTVENIDLKTIGFF-SLVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLE--P 103 (491)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcC--C
Confidence 445566788888888887766 544 222222 25789999999999 98885 5566666666655554432 1
Q ss_pred CCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh-ccchhHHHHHHHH
Q psy8366 386 QWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTS-WFGLHGTLFIYTL 464 (513)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~ 464 (513)
..+.+.......+...+. ....+...++..|.+|+++|+.+.++......+|..+++.+.+.+.+ ..||+..|++.++
T Consensus 104 ~~~l~~l~~~~~l~~~~~-a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~ 182 (491)
T PRK11010 104 GTQLRWLAALAVVIAFCS-ASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAA 182 (491)
T ss_pred cchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHH
Confidence 112222222222222222 34455566899999999999999999999999999999999999988 4699999999888
Q ss_pred HHHHHHhheeEEcccC
Q psy8366 465 VSFLGFIYIYFYVPET 480 (513)
Q Consensus 465 ~~~~~~~~~~~~~~~~ 480 (513)
+.++..+..+ ..+|+
T Consensus 183 l~ll~~l~~~-~~~e~ 197 (491)
T PRK11010 183 LLIPCIIATL-LAPEP 197 (491)
T ss_pred HHHHHHHHHH-hcCCC
Confidence 7776655443 34544
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-08 Score=97.45 Aligned_cols=149 Identities=13% Similarity=0.081 Sum_probs=107.0
Q ss_pred hhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchh
Q psy8366 313 LQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWI 391 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
+......+|.+.+++|.+... ++..+...++..++.++.|+++||+|||+.+..+..+..++.+.. ... +.+.
T Consensus 16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~-----~~~~ 89 (355)
T TIGR00896 16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP-----GTAL 89 (355)
T ss_pred cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc-----cHHH
Confidence 344557788888899998877 889999999999999999999999999999988877766655544 211 3333
Q ss_pred hHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccc--hhHHHHHHHHHHHHH
Q psy8366 392 PLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFG--LHGTLFIYTLVSFLG 469 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~ 469 (513)
.++...+.+.+.+ ...+.....+.|.+| ++|+.+.++.+....+|..+++.+.+.+.+..+ |+..+...+++.++.
T Consensus 90 l~~~~~~~g~g~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 90 LFAGTALIGVGIA-IINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA 167 (355)
T ss_pred HHHHHHHHHHHHH-HHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 3322223333222 223334456677776 689999999999999999999999988877653 777776665544443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-09 Score=118.25 Aligned_cols=135 Identities=17% Similarity=0.165 Sum_probs=116.1
Q ss_pred CCcccchh-hHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccc
Q psy8366 75 PDLILSDE-QSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCE 153 (513)
Q Consensus 75 ~~~~~s~~-~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~ 153 (513)
+.+|.+.. +.+++.+...++..++++++|++.||+++|+.+.++.++.+++.++..+..+.+.++++.++.|++.+...
T Consensus 261 ~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 340 (1146)
T PRK08633 261 EVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFI 340 (1146)
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 56788888 99999999999999999999999999999999999999999888888888899999999999999999999
Q ss_pred cchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH-----hHHHHHHhhhHHHHH
Q psy8366 154 APIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT-----DWRTTVLISAIFPIL 209 (513)
Q Consensus 154 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-----~wr~~f~~~~~~~~~ 209 (513)
+...+++.+.+|+++||+++++.+....+|.++++.++..+ ++...|++.+.+.++
T Consensus 341 ~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 341 VPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888887766665443 455556655554433
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.7e-09 Score=100.85 Aligned_cols=147 Identities=16% Similarity=0.178 Sum_probs=119.8
Q ss_pred cCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhc
Q psy8366 327 FGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGY 405 (513)
Q Consensus 327 ~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (513)
++++..+ +++.+....+.+++.+.+|++.||+|.|+++..+.++.+++.++..+... ...+ .+++.=++.+....
T Consensus 68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~---~~~~-~~~~~R~lqGl~~g 143 (466)
T KOG2532|consen 68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS---IGFY-LLLVLRFLQGLGQG 143 (466)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH---hcch-hhHHHHHHhHHHHh
Confidence 4556655 89999999999999999999999999999999999999998888887662 2333 33333333333334
Q ss_pred cccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhc-cchhHHHHHHHHHHHHHHhheeEEc
Q psy8366 406 GMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSW-FGLHGTLFIYTLVSFLGFIYIYFYV 477 (513)
Q Consensus 406 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 477 (513)
...|....+..+-.|+++|++..++.....++|.+++-++.|.+.+. .||+..|++.+++.++..++.+++.
T Consensus 144 ~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~ 216 (466)
T KOG2532|consen 144 VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFY 216 (466)
T ss_pred HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 55677778999999999999999999999999999999999999998 9999999999999888766544343
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.4e-06 Score=81.35 Aligned_cols=328 Identities=13% Similarity=0.098 Sum_probs=168.7
Q ss_pred HhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHh------c--h-------hHHHHHHHHHHhhcccc-cccc
Q psy8366 91 LFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYL------A--E-------TVSIIMLGTVCMGLSVG-CCEA 154 (513)
Q Consensus 91 ~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~------~--~-------~~~~l~~~r~l~G~g~~-~~~~ 154 (513)
-.+...+.++..|.+.||..|.++...+++..-++..+.+. . + -...+++.-.+.|.-.- +...
T Consensus 47 ~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~ 126 (432)
T PF06963_consen 47 RSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIA 126 (432)
T ss_pred HHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456678888999999999999987776655333332221 1 1 11122222222222111 1111
Q ss_pred chhhhhhccCC------ccccchhhhHhhHHHHHHHHHHHHH----hhhHhHHHHHHhhhHHHHHHHHH-HHhc----cC
Q psy8366 155 PIISYIGEISE------PRMRGSLSLFAGAACNFGVFIIFLI----YALTDWRTTVLISAIFPILTMIM-IAFI----PE 219 (513)
Q Consensus 155 ~~~~~~~~~~~------~~~r~~~~~~~~~~~~lG~~~~~~l----~~~~~wr~~f~~~~~~~~~~~~~-~~~~----~e 219 (513)
...++=.||.. ++.+.+.++...-.--+..+++|++ ....+.+....+.+...++.++. .+++ ..
T Consensus 127 ~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~ 206 (432)
T PF06963_consen 127 NTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNS 206 (432)
T ss_pred hhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22233345542 3444556666544444444455544 44457888888777777777663 2221 23
Q ss_pred chhhhhhcCChHHHHHHHHHh--hCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhH
Q psy8366 220 SPTWLVSKGRLEEAERSLRWV--RGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRP 297 (513)
Q Consensus 220 ~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (513)
.|+ +..|++.++.+...+.- ..............+..+ ..... |+...+.+.+.+
T Consensus 207 ~P~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~-w~~Y~~q~vfla 263 (432)
T PF06963_consen 207 VPA-LAVKKRSSESESSSDEESSSESSSDPSILKRLWNPLR---------------------TIIRG-WRTYFRQPVFLA 263 (432)
T ss_pred ChH-hcCCCCCccccccccccccccccchhhHHHHHHHHHH---------------------HHhcc-HHHHHhCHHHHH
Confidence 332 22222211111000000 000000000000000000 00111 445555554444
Q ss_pred HHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHH
Q psy8366 298 FIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTL 376 (513)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 376 (513)
.+...++++.. . .+......|+...|+++.. +..-....+.++.+.++.+++.+|+|..+.-.++.....+++.
T Consensus 264 s~alalLY~TV-L----sf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~ 338 (432)
T PF06963_consen 264 SFALALLYFTV-L----SFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLA 338 (432)
T ss_pred HHHHHHHHHHH-h----cCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 33333333321 1 1234555566677998877 8888899999999999999999999998887777766655554
Q ss_pred HHHHHHHhcCCC-chhhHHHHHHHHHHH---hccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHh
Q psy8366 377 MLSICAMNLQWP-GWIPLTIFCTCFWVS---GYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTY 446 (513)
Q Consensus 377 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 446 (513)
+.....+.+..+ +......++...... -.++-....-+++|..|+++||...|+-+...++...+.-.+.
T Consensus 339 ~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 339 LCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred HHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444433333322 122222221111111 1233333446889999999999999999999988876665443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.8e-09 Score=96.15 Aligned_cols=146 Identities=18% Similarity=0.249 Sum_probs=130.2
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhcccccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEA 154 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~ 154 (513)
.++|++..+..++.-...+..+++++++|++.||+|.|+++..++++..+.++...+...-..+.++-.+.|...|....
T Consensus 281 ~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA 360 (438)
T COG2270 281 ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQA 360 (438)
T ss_pred HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHH
Confidence 58999999999999999999999999999999999999999999999999999988888777788888999999999999
Q ss_pred chhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH-----hHHHHHHhhhHHHHHHHHHHHhccCc
Q psy8366 155 PIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT-----DWRTTVLISAIFPILTMIMIAFIPES 220 (513)
Q Consensus 155 ~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-----~wr~~f~~~~~~~~~~~~~~~~~~e~ 220 (513)
.+-++..+..|+++-++.+|++....-.+..+||++...+ +-|.-+....++..+.+++.+.+|+.
T Consensus 361 ~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 361 SSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 9999999999999999999999999999999998887665 67777777776666666666666654
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-09 Score=97.57 Aligned_cols=111 Identities=11% Similarity=0.048 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhh
Q psy8366 334 EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWM 413 (513)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (513)
|.+.+.++++.++.++..|.++||+|||.++..+....++...+.+... +...+++.=+.++.+ -+...+..+
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~------~F~afv~aR~l~Gi~-kgnl~v~rA 143 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR------NFAAFVLARFLGGIF-KGNLSVIRA 143 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhc-cCchHHHHH
Confidence 6888899999999999999999999999999999988888776666543 332333323333333 355567779
Q ss_pred hhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy8366 414 LLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTS 451 (513)
Q Consensus 414 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 451 (513)
+++|++++++|+.+++.+++..++|-++||.++|++..
T Consensus 144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 99999999999999999999999999999999999887
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2e-08 Score=98.80 Aligned_cols=119 Identities=11% Similarity=0.048 Sum_probs=95.6
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhch--hHHHHHHHHHHhhcccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAE--TVSIIMLGTVCMGLSVGCC 152 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~g~~~~ 152 (513)
+.+|.+....++......++..++.++++++.||+|+|+++.++.++..++.++..+.+ +++.+++..++.|+|.+..
T Consensus 257 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~ 336 (448)
T PRK09848 257 YVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVT 336 (448)
T ss_pred eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence 45676665555555555677888999999999999999999999999888887777654 6777778889999999999
Q ss_pred ccchhhhhhccCCcc-------ccchhhhHhhHHHHHHHHHHHHHhhh
Q psy8366 153 EAPIISYIGEISEPR-------MRGSLSLFAGAACNFGVFIIFLIYAL 193 (513)
Q Consensus 153 ~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~lG~~~~~~l~~~ 193 (513)
.+...++.+|..+.+ ++|...++.+....+|..+++.+...
T Consensus 337 ~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 337 MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988754 35888899988888888887766543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.6e-08 Score=93.70 Aligned_cols=127 Identities=16% Similarity=0.062 Sum_probs=99.3
Q ss_pred CcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccc
Q psy8366 76 DLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAP 155 (513)
Q Consensus 76 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~ 155 (513)
.+|+++.+.++..+.+..+..++.+..+++.||+|+||.+.++..+..++.++....++... ..+-++.|++.+..+|.
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPT 250 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999988888888776666554433 34566889999999999
Q ss_pred hhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh----HhHHHHHHhhhH
Q psy8366 156 IISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL----TDWRTTVLISAI 205 (513)
Q Consensus 156 ~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----~~wr~~f~~~~~ 205 (513)
..+...+..|++ .+.+.++. ....+|..+.|.+.+. .|.+..|++..+
T Consensus 251 ~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 251 IFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVP 302 (310)
T ss_pred HHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHH
Confidence 999998888653 45666665 4455777777765444 377777764433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-07 Score=87.72 Aligned_cols=129 Identities=19% Similarity=0.156 Sum_probs=95.6
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhcc
Q psy8366 84 SSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEI 163 (513)
Q Consensus 84 ~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~ 163 (513)
.+.+.-+-.+...+..+.+-+..+|...+.=..+..++..+|.++.+++++.+.-+++-.+.+++.|........+.. .
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~ 139 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-F 139 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-h
Confidence 444555556666777777888889988666666777788889999999999999999999999999988888877644 5
Q ss_pred CCccccchhhhHhhHHHHHHHHHHHHHhhhH-----hHHHHHHhhhHHHHHHHHHHHhc
Q psy8366 164 SEPRMRGSLSLFAGAACNFGVFIIFLIYALT-----DWRTTVLISAIFPILTMIMIAFI 217 (513)
Q Consensus 164 ~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-----~wr~~f~~~~~~~~~~~~~~~~~ 217 (513)
+++ ...+.+..|.+.+.++|+.....+ +-|..+++...+.++..+..+++
T Consensus 140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~ 194 (402)
T PF02487_consen 140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFL 194 (402)
T ss_pred cCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 543 456777778777777776654332 55778887777776666554443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=98.89 E-value=8e-09 Score=92.30 Aligned_cols=128 Identities=19% Similarity=0.152 Sum_probs=100.5
Q ss_pred hhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccch
Q psy8366 92 FLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGS 171 (513)
Q Consensus 92 ~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~ 171 (513)
.+.-..|.++.+++.||+|||+.+..+.+++++..++.....+-....+.-|..-++..+.+.+.+.|..|.+|.+-|+.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 34556788999999999999999999999999999988877654333333333334445567788999999999999999
Q ss_pred hhhHhhHHHHHHHHHHHHHhhhH--hHHHHHHhhhHHHHHHHHHHHhccC
Q psy8366 172 LSLFAGAACNFGVFIIFLIYALT--DWRTTVLISAIFPILTMIMIAFIPE 219 (513)
Q Consensus 172 ~~~~~~~~~~lG~~~~~~l~~~~--~wr~~f~~~~~~~~~~~~~~~~~~e 219 (513)
..|.-....-+|.++.|+++-.. +-..+..+.+...++..+...++|-
T Consensus 471 gvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred chhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeee
Confidence 99999999999999999998333 4445566677777777777777774
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.2e-08 Score=94.52 Aligned_cols=150 Identities=16% Similarity=0.134 Sum_probs=114.3
Q ss_pred cCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhc
Q psy8366 327 FGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGY 405 (513)
Q Consensus 327 ~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (513)
.++..+. +...+++.++.+++.+.++.+.||++..+.+....++.++..++-... ++...+++.-++.+.+..
T Consensus 76 l~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~------~s~~~~ialr~llGl~es 149 (495)
T KOG2533|consen 76 LKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV------HSFPGLIALRFLLGLFES 149 (495)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHhc
Confidence 3444445 788889999999999999999999996665554444444433333222 234444554555555556
Q ss_pred cccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhh------hccchhHHHHHHHHHHHHHHhheeEEccc
Q psy8366 406 GMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLT------SWFGLHGTLFIYTLVSFLGFIYIYFYVPE 479 (513)
Q Consensus 406 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (513)
+..|....++...+.+++|+.-+|+.+...++|+++|+.+...+. ...||++.|++-+++.++..+++++++|+
T Consensus 150 ~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 150 GGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred ccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence 777888899999999999999999999999999999999887753 35689999999999999999888888876
Q ss_pred CCC
Q psy8366 480 TED 482 (513)
Q Consensus 480 ~~~ 482 (513)
...
T Consensus 230 ~P~ 232 (495)
T KOG2533|consen 230 NPS 232 (495)
T ss_pred Chh
Confidence 554
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-08 Score=94.87 Aligned_cols=146 Identities=23% Similarity=0.355 Sum_probs=114.0
Q ss_pred CCcc-cchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhc-hhHHHHHH----HHHHhhcc
Q psy8366 75 PDLI-LSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLA-ETVSIIML----GTVCMGLS 148 (513)
Q Consensus 75 ~~~~-~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~----~r~l~G~g 148 (513)
++.| .+....+.+.++..+.-.+.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+...+ ...++|+.
T Consensus 235 ~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~t 314 (400)
T PF03825_consen 235 QELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLT 314 (400)
T ss_pred HHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHH
Confidence 5566 677777888888888888999999999999999999999999999988888877 55444333 35679999
Q ss_pred ccccccchhhhhhccCCccccchhhhHhhHH-HHHHHHHHHHHhhhH----------hHHHHHHhhhHHHHHHHHH-HHh
Q psy8366 149 VGCCEAPIISYIGEISEPRMRGSLSLFAGAA-CNFGVFIIFLIYALT----------DWRTTVLISAIFPILTMIM-IAF 216 (513)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~lG~~~~~~l~~~~----------~wr~~f~~~~~~~~~~~~~-~~~ 216 (513)
.+..+.+...++.+.+|++.|+++.+++.+. .++|..+|..+++.+ .|...+.+.+.+.++..++ .++
T Consensus 315 f~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 315 FGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998654 567777777776654 4556666666666666553 344
Q ss_pred ccCc
Q psy8366 217 IPES 220 (513)
Q Consensus 217 ~~e~ 220 (513)
.+|+
T Consensus 395 fk~~ 398 (400)
T PF03825_consen 395 FKPK 398 (400)
T ss_pred ccCC
Confidence 4543
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.5e-07 Score=79.06 Aligned_cols=342 Identities=13% Similarity=0.060 Sum_probs=175.6
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhcccccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEA 154 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~ 154 (513)
+.++....++|.+.-..+-..++.+.+.|-++||-|||+.-+.-++.+.+++ +.-.++.|-.++++|.+-|+..+..+.
T Consensus 65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFS 143 (454)
T KOG4332|consen 65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFS 143 (454)
T ss_pred hhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHH
Confidence 6788888899988888888888999999999999999997555444444432 344678899999999999999998888
Q ss_pred chhhhh-hccCCccccchhhhHhhHH--------HHHHHHHHHHHhhhH------hHHHHHHhhhHHHHHHHHHHHhccC
Q psy8366 155 PIISYI-GEISEPRMRGSLSLFAGAA--------CNFGVFIIFLIYALT------DWRTTVLISAIFPILTMIMIAFIPE 219 (513)
Q Consensus 155 ~~~~~~-~~~~~~~~r~~~~~~~~~~--------~~lG~~~~~~l~~~~------~wr~~f~~~~~~~~~~~~~~~~~~e 219 (513)
+-.++. .|.- ++|+.-.-+...- ..+-.+++++.+..+ |--.+|-..+.+..+...+.+-
T Consensus 144 aFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~--- 218 (454)
T KOG4332|consen 144 AFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILS--- 218 (454)
T ss_pred HHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHh---
Confidence 877664 4443 3455432222221 122223333333332 3334554443333333222110
Q ss_pred chhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHH
Q psy8366 220 SPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFI 299 (513)
Q Consensus 220 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (513)
.|-..-++..+.++.+...++. .+.+... ++..
T Consensus 219 --~W~ENygdps~~kdlltqf~ga------------------------------------------a~aiaSD---~ki~ 251 (454)
T KOG4332|consen 219 --SWSENYGDPSENKDLLTQFKGA------------------------------------------ARAIASD---EKIA 251 (454)
T ss_pred --hhhhccCChhhhHHHHHHhhHh------------------------------------------HHHHhcc---hHHH
Confidence 1111122222222222211110 0111111 1222
Q ss_pred HHHHHHHHHHhhchhchhhhHHHHHHhcCCCchhHHHHHHHHHHHHHhhhHHHHhhcccCCc--hHHHHhhHHHHHHHHH
Q psy8366 300 MIMILFFITIIASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKR--GMTLWSTGINTFFTLM 377 (513)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~ 377 (513)
+...+........+.....|.|.+-. ..-....|.++..+.+..++|+-+..++..|-..| ..+.+.+.+..+.+.+
T Consensus 252 LLG~iqsLFE~smytFVFLWTPaLsp-n~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~L 330 (454)
T KOG4332|consen 252 LLGAIQSLFEGSMYTFVFLWTPALSP-NDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLL 330 (454)
T ss_pred HHHHHHHHHhhhhheeeeeecccCCC-CcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHH
Confidence 22333333333334444455553210 00011127888888888899988887777665443 3444555555544444
Q ss_pred HHHHHHhc--CCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccch
Q psy8366 378 LSICAMNL--QWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGL 455 (513)
Q Consensus 378 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 455 (513)
........ ..++...++.++.+-.+.+ .++|...-+-.+..|.+.|++.+-....=-++...++-+..-.-....+-
T Consensus 331 pilt~~vsP~kes~~~s~i~F~~~E~cvG-lfwPSimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~t 409 (454)
T KOG4332|consen 331 PILTSSVSPSKESPSESLIGFCLFEACVG-LFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTT 409 (454)
T ss_pred HHHHhccCCCcCCchHHHHHHHHHHHHHh-hcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCcccc
Confidence 33332221 1223333444554444443 34565556777888988888766554333333222221110000011234
Q ss_pred hHHHHHHHHHHHHHHh
Q psy8366 456 HGTLFIYTLVSFLGFI 471 (513)
Q Consensus 456 ~~~~~~~~~~~~~~~~ 471 (513)
+..|-++.+...++.+
T Consensus 410 r~mf~icS~~~~~a~i 425 (454)
T KOG4332|consen 410 RNMFGICSAFLFVASI 425 (454)
T ss_pred chhhhhhHHHHHHHHH
Confidence 4566666665555544
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.1e-08 Score=97.09 Aligned_cols=176 Identities=18% Similarity=0.229 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHH
Q psy8366 296 RPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFF 374 (513)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 374 (513)
|......++...........+..+.+.+.++++.+..+ ++..++...+..+..++.+.+.||+|.|.+.+.|..+..++
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g 124 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALG 124 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHH
Confidence 33444444444444444455556667677777776665 78888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhHHHH-HHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy8366 375 TLMLSICAMNLQWPGWIPLTIF-CTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWF 453 (513)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 453 (513)
+++..+.. +.|..++.. .+.+.+.++.+.|.. ..+...+ +++|+.+.|+......+|.++-|.+...+.+..
T Consensus 125 ~~lssF~~-----~i~~l~lt~gvi~G~G~~~~~~pai-viv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~ 197 (509)
T KOG2504|consen 125 LLLSSFAT-----SLWQLYLTFGVIGGLGLGLIYLPAV-VILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKY 197 (509)
T ss_pred HHHHHHHh-----hHHHHHHHHHHHhhccchhhhcchh-hhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHh
Confidence 99888876 433333322 233333333333433 4555554 599999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhheeEEcc
Q psy8366 454 GLHGTLFIYTLVSFLGFIYIYFYVP 478 (513)
Q Consensus 454 g~~~~~~~~~~~~~~~~~~~~~~~~ 478 (513)
||+..+++.+.+.+-.+.....+.|
T Consensus 198 G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 198 GWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999888776665555554
|
|
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.6e-08 Score=84.72 Aligned_cols=363 Identities=14% Similarity=0.179 Sum_probs=214.1
Q ss_pred CCcccchhhHH-HHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccc
Q psy8366 75 PDLILSDEQSS-WLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCE 153 (513)
Q Consensus 75 ~~~~~s~~~~~-~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~ 153 (513)
.+.|++..++. -+.-...-.+.+.-.+.=.+.|-.-.|+++++-.+.......+..+.++.+.+-+.-+..|...+ ..
T Consensus 34 p~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aE 112 (433)
T KOG3810|consen 34 PDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AE 112 (433)
T ss_pred CCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HH
Confidence 45567766543 33344445556677777789999888999888888888888888999999999999999999876 66
Q ss_pred cchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH------hHHHHHHhhhHHHHHHHHHHHhccCchhhhhhc
Q psy8366 154 APIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT------DWRTTVLISAIFPILTMIMIAFIPESPTWLVSK 227 (513)
Q Consensus 154 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~ 227 (513)
.+-++++-+..+++++.++.+...++.-.|-..|..++..+ +++..-.+......+...+.+++|..+|.+.-+
T Consensus 113 IAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~ 192 (433)
T KOG3810|consen 113 IAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFH 192 (433)
T ss_pred HhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhh
Confidence 77888999999999999999999888888888888877765 555555555555556666777888766433322
Q ss_pred CChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHH
Q psy8366 228 GRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFI 307 (513)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (513)
.+.++. ...+....+++.+ ..+..+ .....+++++ ...+.++.+....++..
T Consensus 193 ~~~~~~--~v~~~e~~~~~~~----~~~~l~---------------------~~~~~l~~~l-~~~y~np~ll~WSlWwA 244 (433)
T KOG3810|consen 193 RLEDKI--SVGDLEEMNPQAS----YMSYLR---------------------GAFVLLWRDL-QECYSNPRLLKWSLWWA 244 (433)
T ss_pred cccccc--eeccchhcCccch----hhHHHH---------------------HHHHHHHHHH-HHHhcCchhhhhHHHHH
Confidence 222210 0000000000000 000000 0011111111 11111222333444455
Q ss_pred HHhhchhchhhhHHHHHHhcCCCchh---HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHh
Q psy8366 308 TIIASLQPMRPFLVEIFRTFGLPMKS---EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMN 384 (513)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (513)
...++++-...|.+.+.++..-.+.. |..=.+..+.+.++.+..|.+.-++.|..-+.++..-...+.+++....
T Consensus 245 l~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~-- 322 (433)
T KOG3810|consen 245 LASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQ-- 322 (433)
T ss_pred HhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhc--
Confidence 55555666667777777765422222 5666777888889999999998777765433333332222222222221
Q ss_pred cCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccc----------
Q psy8366 385 LQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFG---------- 454 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g---------- 454 (513)
.++.|+......++....... .++....+++....+.-|..+|++.++.-+-..+-..+ ..|..|
T Consensus 323 -t~~Iw~~Ya~yvlfr~~y~l~-itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~ 397 (433)
T KOG3810|consen 323 -TQHIWVCYAGYVLFRVIYQLT-ITIATFQIARNLSSELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDIRTQFV 397 (433)
T ss_pred -ccceehhhhhHHHHHhhHhhh-hhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEE---EEcccccCCCcceeEE
Confidence 235555555555555555333 34443444444466777889998887766555444433 344322
Q ss_pred -hhHHHHHHHHHHHHHHhhe
Q psy8366 455 -LHGTLFIYTLVSFLGFIYI 473 (513)
Q Consensus 455 -~~~~~~~~~~~~~~~~~~~ 473 (513)
+..-|.+.+++.+++....
T Consensus 398 ~Y~~Yf~v~~~i~~~~~~~~ 417 (433)
T KOG3810|consen 398 VYSSYFIVLGVIFLIGFGIE 417 (433)
T ss_pred EEeehHHHHHHHHHHHHHHH
Confidence 3345677777777776543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-06 Score=87.81 Aligned_cols=141 Identities=20% Similarity=0.259 Sum_probs=116.3
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhh-cchhhHHHHHhHHHHHHHHHHHhchh--------HHHHHHHHHHh
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEY-IGRKRLMILVGFPFFLGWILLYLAET--------VSIIMLGTVCM 145 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~ 145 (513)
+.+|.+++....+...+....-+..+++|+++|+ +||++.+.++.++..+|..+.+++.. ....+++-.+.
T Consensus 16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLi 95 (654)
T TIGR00926 16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALI 95 (654)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHH
Confidence 5678899999999999999999999999999996 79999999999999999988877521 23466788889
Q ss_pred hccccccccchhhhhhccCCccc---cchhhhHhhHHHHHHHHHHHHHhhhH-----------hHHHHHHhhhHHHHHHH
Q psy8366 146 GLSVGCCEAPIISYIGEISEPRM---RGSLSLFAGAACNFGVFIIFLIYALT-----------DWRTTVLISAIFPILTM 211 (513)
Q Consensus 146 G~g~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~lG~~~~~~l~~~~-----------~wr~~f~~~~~~~~~~~ 211 (513)
++|.|+.-+...+...|.+++++ |-....++..+.++|.+++..+..++ +|...|.+.++..++.+
T Consensus 96 a~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~ 175 (654)
T TIGR00926 96 ALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILAL 175 (654)
T ss_pred HhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHH
Confidence 99999999999999999997543 55678888888899998887775443 48899999888888777
Q ss_pred HHHH
Q psy8366 212 IMIA 215 (513)
Q Consensus 212 ~~~~ 215 (513)
++..
T Consensus 176 lvf~ 179 (654)
T TIGR00926 176 IVFM 179 (654)
T ss_pred HHHH
Confidence 6443
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.5e-08 Score=100.22 Aligned_cols=137 Identities=18% Similarity=0.209 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhh
Q psy8366 334 EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWM 413 (513)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (513)
.+..++..++..+|+++.|.++||+|||+++..+..+..++.+..++.. ++....+.=++.+.+..+...+.+.
T Consensus 121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~------~~~~~~~~Rfl~G~~~~~~~~~~~~ 194 (521)
T KOG0255|consen 121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP------NYWMFLIFRFLSGFFGSGPLTVGFG 194 (521)
T ss_pred HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC------cHHHHHHHHHHHHhhccchhHHhHh
Confidence 6777889999999999999999999999999999999999887766654 4444444444444555666777789
Q ss_pred hhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeEEcccC
Q psy8366 414 LLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPET 480 (513)
Q Consensus 414 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (513)
+..|.+++++|+.+..+ ......++.+++...+++.. +|+..+++.....++..++ +++.+|.
T Consensus 195 ~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 195 LVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred hheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 99999999999999999 88888888999999988887 8999888888777766654 3444454
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.4e-08 Score=90.33 Aligned_cols=146 Identities=17% Similarity=0.214 Sum_probs=117.9
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhcccccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEA 154 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~ 154 (513)
++-+.++...|.+.++..+.-++...+..++.+|+|.|+.++++.++.++=-.+++++++.+.+.+.+.+.|+-.+....
T Consensus 252 ~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lv 331 (412)
T PF01306_consen 252 QSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLV 331 (412)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 34455667799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhccCCccccchhhhHh-hHHHHHHHHHHHHHhhh----HhHHHHHHhhhHHHHHHHHH-HHhccCc
Q psy8366 155 PIISYIGEISEPRMRGSLSLFA-GAACNFGVFIIFLIYAL----TDWRTTVLISAIFPILTMIM-IAFIPES 220 (513)
Q Consensus 155 ~~~~~~~~~~~~~~r~~~~~~~-~~~~~lG~~~~~~l~~~----~~wr~~f~~~~~~~~~~~~~-~~~~~e~ 220 (513)
....|+++.+|+|..++...+. +.+.++|..+.+.+++. +|.+..|++.+.+.++..++ .+.++++
T Consensus 332 a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 332 AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 9999999999988877766664 56666776665555544 49999999988887776664 4445543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.5e-08 Score=95.73 Aligned_cols=114 Identities=9% Similarity=0.029 Sum_probs=87.6
Q ss_pred chhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHh-----chhHHHHHHHHHHhhcccccccc
Q psy8366 80 SDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYL-----AETVSIIMLGTVCMGLSVGCCEA 154 (513)
Q Consensus 80 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~g~~~~~~ 154 (513)
+....+++.+...++..++.+++++++||+|+|+.+.++..+..++.+...+ .++.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777888999999999999999999999888877766655432 34567777788889999999999
Q ss_pred chhhhhhccCC-------ccccchhhhHhhHHHHHHHHHHHHHhhh
Q psy8366 155 PIISYIGEISE-------PRMRGSLSLFAGAACNFGVFIIFLIYAL 193 (513)
Q Consensus 155 ~~~~~~~~~~~-------~~~r~~~~~~~~~~~~lG~~~~~~l~~~ 193 (513)
...++++|..+ .++.|...+......-+|..+++.+.+.
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~ 389 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGV 389 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999865 2333557788877777777776665443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.5e-07 Score=82.46 Aligned_cols=143 Identities=12% Similarity=0.020 Sum_probs=99.8
Q ss_pred HHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcC
Q psy8366 308 TIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQ 386 (513)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (513)
......+.+..|.|.+-+..|++..+ ..+.....++..+ .++.|.+.|++|++..+.++.+...++..++.......-
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i 91 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI 91 (250)
T ss_pred HhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 33445677788899888889998877 6666677777766 488899999999999999999999999887776552211
Q ss_pred C-CchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy8366 387 W-PGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSW 452 (513)
Q Consensus 387 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 452 (513)
. .+.+.+.+....+................+.+| ++||++.|+.-....+++++-..+...+.+.
T Consensus 92 ~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 92 PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 1 222222222222222211222333344556788 6899999999999999999988888777765
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7e-08 Score=90.10 Aligned_cols=150 Identities=25% Similarity=0.350 Sum_probs=118.7
Q ss_pred ccccccchhhhhhcccccccccccCCCCcccch--hhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHH
Q psy8366 49 MAFGMPTVVVGVLDHKVASNQTILESPDLILSD--EQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGW 126 (513)
Q Consensus 49 ~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~--~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 126 (513)
..........+.+. .+++.+. .+.++..+.+.++..++.++.|.+.||+|||+.+..+.....++.
T Consensus 16 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 83 (338)
T COG0477 16 LDLGLLSPALPLLL------------STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGT 83 (338)
T ss_pred HhcchHHHHHHHHH------------HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHH
Confidence 34444455666666 4555454 578999999999999999999999999999999888887767777
Q ss_pred HHHHhchh--HHHHHHHHHHhhccccccccchhhhhhccCCc-cccchhhhHhhH-HHHHHHHHHHHHhhhH------hH
Q psy8366 127 ILLYLAET--VSIIMLGTVCMGLSVGCCEAPIISYIGEISEP-RMRGSLSLFAGA-ACNFGVFIIFLIYALT------DW 196 (513)
Q Consensus 127 ~~~~~~~~--~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~-~~~lG~~~~~~l~~~~------~w 196 (513)
+++.+..+ .+.+++.|+++|++.+...+...+++.|+.|+ ++|+...+.... ...+|..+++.++..+ +|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (338)
T COG0477 84 LLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGW 163 (338)
T ss_pred HHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 77777776 99999999999999999999999999999987 678888888887 5777777777655433 68
Q ss_pred HHHHHhhhHHHHHH
Q psy8366 197 RTTVLISAIFPILT 210 (513)
Q Consensus 197 r~~f~~~~~~~~~~ 210 (513)
|+.|.+........
T Consensus 164 ~~~~~~~~~~~~~~ 177 (338)
T COG0477 164 RAAFLLAALLGLLL 177 (338)
T ss_pred HHHHHHHHHHHHHH
Confidence 88666665555433
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.7e-07 Score=79.80 Aligned_cols=135 Identities=13% Similarity=0.120 Sum_probs=93.1
Q ss_pred HHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhh-----hcchhhH-
Q psy8366 41 NFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLE-----YIGRKRL- 114 (513)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d-----r~Grr~~- 114 (513)
.+....-|...+... .+|.+. +.-|.|.++.+...-++. -...-+.|.++.| |+||||.
T Consensus 37 l~LYllQGiP~GL~~-~iP~lL------------~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksW 101 (510)
T KOG3574|consen 37 LFLYLLQGIPLGLIG-AIPLLL------------QAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSW 101 (510)
T ss_pred HHHHHHcCCchhHhh-hhHHHh------------cCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccce
Confidence 445666788888877 899999 667788777665433321 1124567889999 9999987
Q ss_pred HHHHhHHHHHHHHHHHh-----------chhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHH
Q psy8366 115 MILVGFPFFLGWILLYL-----------AETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFG 183 (513)
Q Consensus 115 ~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG 183 (513)
++-+..+.+....+.+. .++...+...-++.-+..+....+.-.+.-.+..+++-|.+......+...|
T Consensus 102 vvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~G 181 (510)
T KOG3574|consen 102 VVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAG 181 (510)
T ss_pred eeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhh
Confidence 33333333333333322 2344445455567777777777888888888888999999999999999999
Q ss_pred HHHHHHH
Q psy8366 184 VFIIFLI 190 (513)
Q Consensus 184 ~~~~~~l 190 (513)
..++..+
T Consensus 182 yfL~~~i 188 (510)
T KOG3574|consen 182 YFLGNVV 188 (510)
T ss_pred HHhhcce
Confidence 8887665
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.1e-05 Score=74.78 Aligned_cols=115 Identities=12% Similarity=0.055 Sum_probs=88.1
Q ss_pred chhhHHHHHHHHhhhhhhh-HHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhc----h---------------------
Q psy8366 80 SDEQSSWLGSILFLFHPFG-SIISGYFLEYIGRKRLMILVGFPFFLGWILLYLA----E--------------------- 133 (513)
Q Consensus 80 s~~~~~~~~s~~~l~~~i~-~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----~--------------------- 133 (513)
+.+.+.++-+...+...+. .++.+++++|++|++++-+....+.....++++. +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 3467899999888887777 8999999999999999888777777666666554 1
Q ss_pred ------hHHHHHHHHHHhhcccccccc-chhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH
Q psy8366 134 ------TVSIIMLGTVCMGLSVGCCEA-PIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT 194 (513)
Q Consensus 134 ------~~~~l~~~r~l~G~g~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~ 194 (513)
+.|...+..+...+-...... .-..++.|.++.+|-.|..++...+.++|.++++.+..++
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~ 188 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF 188 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333444455554444444 5668899999999999999999999999999999887664
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-07 Score=92.37 Aligned_cols=111 Identities=17% Similarity=0.204 Sum_probs=97.2
Q ss_pred hhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhch--hHHHHHHHHHHhhccccccccchhhh
Q psy8366 82 EQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAE--TVSIIMLGTVCMGLSVGCCEAPIISY 159 (513)
Q Consensus 82 ~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~g~~~~~~~~~~~ 159 (513)
...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++..+.+ |.+.+++.-++.|++.+...+...++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 5678888899999999999999999999999999999999999999998886 99999999999999999999999999
Q ss_pred hhccCCc-------cccchhhhHhhHHHHHHHHHHHHHhh
Q psy8366 160 IGEISEP-------RMRGSLSLFAGAACNFGVFIIFLIYA 192 (513)
Q Consensus 160 ~~~~~~~-------~~r~~~~~~~~~~~~lG~~~~~~l~~ 192 (513)
++|..+. ++.|...+.......+|..+++.+..
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG 379 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 9999873 33477788887777777777666544
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.4e-08 Score=90.98 Aligned_cols=146 Identities=14% Similarity=0.078 Sum_probs=109.4
Q ss_pred CCCchh-HHHHHHHHHHHHHhhhHHHHhhccc-CCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhc
Q psy8366 328 GLPMKS-EWVLVLTGILSITGSFVSTITVNKL-GKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGY 405 (513)
Q Consensus 328 g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (513)
|++.+. ..+...++...-+..+++||++||+ |+|+++..+.+++.++.+++.... ........+.+.++. .+..
T Consensus 57 g~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~---~~~~~gl~i~L~~I~-iG~G 132 (498)
T COG3104 57 GFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS---VSGPGGLYIGLALII-VGTG 132 (498)
T ss_pred CcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc---cccccHHHHHHHHHH-hccc
Confidence 377665 4555666666677788999999995 999999999999999999888752 011222333333333 3334
Q ss_pred cccchhhhhhccccchh--hhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeEEc
Q psy8366 406 GMLPLPWMLLSEVFPLQ--VRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYV 477 (513)
Q Consensus 406 ~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 477 (513)
.+-+...+++.|++|++ +|..++++.....++|+.++|.+.+++.+..||+..|...++-..++.+..++..
T Consensus 133 l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 133 LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 55566668999998864 4788888999999999999999999999999999999998888887777554433
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-07 Score=81.63 Aligned_cols=141 Identities=14% Similarity=0.164 Sum_probs=104.4
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHH-HHHHHHHHhchhHHHHHHHHHHhhccccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPF-FLGWILLYLAETVSIIMLGTVCMGLSVGCCE 153 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~ 153 (513)
+.||+|+...+-+.+....-.++.+++.|.++||+|++...+.+.++. .++..+..|+ ++.=.++..+.|+..+..-
T Consensus 293 ~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsysllA 370 (459)
T KOG4686|consen 293 KRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYSLLA 370 (459)
T ss_pred HhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHHHHH
Confidence 789999999999999999999999999999999999998866655544 4444444443 3333456677888777665
Q ss_pred cchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH-------hHHHHHH-hhhHHHHHHHHHHHhc
Q psy8366 154 APIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT-------DWRTTVL-ISAIFPILTMIMIAFI 217 (513)
Q Consensus 154 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-------~wr~~f~-~~~~~~~~~~~~~~~~ 217 (513)
......++...|+++.|++.+..+...++|-.+.+++++.+ .|--.|. +.+.+++....+.+.+
T Consensus 371 cslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 371 CSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 55667788888999999999999999999999999987765 3444444 3444444444444443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.9e-08 Score=67.82 Aligned_cols=81 Identities=19% Similarity=0.157 Sum_probs=74.3
Q ss_pred hcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHH
Q psy8366 47 LGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGW 126 (513)
Q Consensus 47 ~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 126 (513)
.|+....++|++|.+. +|.++|.++.|++.+..++||.+|.+...++.++..+++.+..+++...+..
T Consensus 4 mGigRFayTplLP~M~------------~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~ 71 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQ------------ADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLST 71 (85)
T ss_pred hhhHHHHHHhHhHHHH------------HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 3556677789999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchhHHHHH
Q psy8366 127 ILLYLAETVSIIM 139 (513)
Q Consensus 127 ~~~~~~~~~~~l~ 139 (513)
+.+++.++++.+.
T Consensus 72 ~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 72 AAMALTHSFWLWS 84 (85)
T ss_pred HHHHHHhchHHHh
Confidence 9999999887653
|
Note that many members are hypothetical proteins. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-06 Score=79.80 Aligned_cols=156 Identities=7% Similarity=-0.107 Sum_probs=113.5
Q ss_pred hhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchh
Q psy8366 313 LQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWI 391 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
........|.+.+.++++..+ ++.......+..+.++..+++.+|+|+|+.++.++.++++++.++.-.. ....+.
T Consensus 29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa---~~~~y~ 105 (422)
T COG0738 29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA---SSKSYG 105 (422)
T ss_pred hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh---hhhhHH
Confidence 344556677766778888776 7888889999999999999999999999999999999999988876443 112232
Q ss_pred hHHH-HHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhc------------------
Q psy8366 392 PLTI-FCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSW------------------ 452 (513)
Q Consensus 392 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~------------------ 452 (513)
..+. +++.+.+. ...-...+.++..+.|++....-+.+.+.+..+|++++|.+.+.+..+
T Consensus 106 ~FL~~lFila~Gi-~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~ 184 (422)
T COG0738 106 FFLVALFILASGI-GLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGAD 184 (422)
T ss_pred HHHHHHHHHHhhh-HHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHH
Confidence 2222 22222222 223344457888888888888899999999999999999999988873
Q ss_pred -cchhHHHHHHHHHHHHHHhh
Q psy8366 453 -FGLHGTLFIYTLVSFLGFIY 472 (513)
Q Consensus 453 -~g~~~~~~~~~~~~~~~~~~ 472 (513)
..++.++...+..+++..+.
T Consensus 185 ~~~v~~pYl~~~~~lvll~v~ 205 (422)
T COG0738 185 ASSVQFPYLILAGLLVLLAVL 205 (422)
T ss_pred HHhhhhHHHHHHHHHHHHHHH
Confidence 12556677666666555443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.2e-07 Score=84.03 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=94.4
Q ss_pred CcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhch--hHHHHHHHHHHhhccccccc
Q psy8366 76 DLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAE--TVSIIMLGTVCMGLSVGCCE 153 (513)
Q Consensus 76 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~g~~~~~ 153 (513)
.+|-++.+..+.......+..++.+++.++.+|+|+|+++.++.++..++.++..+.+ +.+.+++..++.++|.+...
T Consensus 266 ~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~ 345 (467)
T COG2211 266 VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIAN 345 (467)
T ss_pred EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccc
Confidence 3455666777888888888888899999999999999999999999999999998876 78888999999999999999
Q ss_pred cchhhhhhccCCc-------cccchhhhHhhHHHHHHHHHHHHHh
Q psy8366 154 APIISYIGEISEP-------RMRGSLSLFAGAACNFGVFIIFLIY 191 (513)
Q Consensus 154 ~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~lG~~~~~~l~ 191 (513)
+...++++|...- +.-|...+......=+|..++..+.
T Consensus 346 ~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~ 390 (467)
T COG2211 346 PLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIP 390 (467)
T ss_pred cccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988752 2235566666666556766665543
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.9e-07 Score=90.43 Aligned_cols=139 Identities=13% Similarity=0.138 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhh
Q psy8366 334 EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWM 413 (513)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (513)
+++.+...++..+++++.|+++|++|||+.+.++.++..++.++..... +.+...+.=.+.+.+.+ +...+...
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~-----~~~~l~~GR~l~G~g~G-~~~~~~pi 165 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP-----SWYQLIVGRILTGLGVG-GASVLAPV 165 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHhccchh-hhhhcchh
Confidence 6888899999999999999999999999999999999999998888865 44444444444444443 33344457
Q ss_pred hhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcc--chhHHHHHHHHHHHHHHhheeEEcccC
Q psy8366 414 LLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWF--GLHGTLFIYTLVSFLGFIYIYFYVPET 480 (513)
Q Consensus 414 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (513)
+.+|..|++.||...+..+....+|..++ .+.+...+.. +|+..+.+..+.+++..+. .++.||.
T Consensus 166 y~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 166 YISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred hHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 99999999999999999999999777777 6666666554 8998877777777766665 5566654
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.5e-07 Score=86.85 Aligned_cols=165 Identities=13% Similarity=0.078 Sum_probs=99.6
Q ss_pred chhhhHHHHH-HhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcc----cCCchHH-HHhhHHHHHHHHHHHHHHHhcCC
Q psy8366 315 PMRPFLVEIF-RTFGLPMKS-EWVLVLTGILSITGSFVSTITVNK----LGKRGMT-LWSTGINTFFTLMLSICAMNLQW 387 (513)
Q Consensus 315 ~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 387 (513)
.+..|++.++ +..|++... +....+.-+...+..++.|+++|| +||||.. ..+....+++..++...+.....
T Consensus 27 ~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~ 106 (444)
T PRK09669 27 TVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGAT 106 (444)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcc
Confidence 3345555555 468998877 889999999999999999999998 6675554 45555555555444332200000
Q ss_pred C-chhhHHHHHHHHHHHhccccchhhhhhcccc-chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhc-------cchhHH
Q psy8366 388 P-GWIPLTIFCTCFWVSGYGMLPLPWMLLSEVF-PLQVRGIASGITAASSSVVNFISTKTYINLTSW-------FGLHGT 458 (513)
Q Consensus 388 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-------~g~~~~ 458 (513)
. .+...+...+...+.. .......++.+|.. ++++|+...+.......+|+.+++.+...+... .||...
T Consensus 107 ~~~~~~~~~~~l~~~~~t-~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~ 185 (444)
T PRK09669 107 GKIIYACVTYILLSLVYT-AINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYA 185 (444)
T ss_pred hHHHHHHHHHHHHHHHHH-hhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHH
Confidence 1 1112222222222332 22333346777876 457899888888888888888877655444432 355666
Q ss_pred HHHHHHHHHHHHhheeEEcccC
Q psy8366 459 LFIYTLVSFLGFIYIYFYVPET 480 (513)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~ 480 (513)
+.+.++++++..+++++..+|+
T Consensus 186 ~~i~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 186 MMVMGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred HHHHHHHHHHHHHHHhCCeEEe
Confidence 6666766666655554444443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.4e-07 Score=90.04 Aligned_cols=145 Identities=11% Similarity=0.069 Sum_probs=115.0
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhc----------hhHHHHHHHHHH
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLA----------ETVSIIMLGTVC 144 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l 144 (513)
+++|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+..... ++.+..+..-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 5789999999999999999999999999999999999999999999999888664311 344455566788
Q ss_pred hhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----h-----HHHHHH---hhhHHHHHHHH
Q psy8366 145 MGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----D-----WRTTVL---ISAIFPILTMI 212 (513)
Q Consensus 145 ~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~-----wr~~f~---~~~~~~~~~~~ 212 (513)
.+++.+..+.+...++.+..|++++|...++.....++|..+++.+++.+ | ++..+. +..+..++.+.
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~ 440 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP 440 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888888766554 3 333332 23333344444
Q ss_pred HHHhccC
Q psy8366 213 MIAFIPE 219 (513)
Q Consensus 213 ~~~~~~e 219 (513)
+.+++|+
T Consensus 441 ~~~llP~ 447 (468)
T TIGR00788 441 LLHLLPR 447 (468)
T ss_pred HHHhCCC
Confidence 5557785
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-06 Score=83.41 Aligned_cols=159 Identities=13% Similarity=0.058 Sum_probs=108.7
Q ss_pred HHHHh--cCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCC-chHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHH
Q psy8366 322 EIFRT--FGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGK-RGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFC 397 (513)
Q Consensus 322 ~~~~~--~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (513)
.|+++ .+-+.+. |+..+...++..+++++.|+...|.+. |+.++.+.+++.++.+++......++. +..+++..
T Consensus 59 pYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~--~~y~mL~~ 136 (488)
T KOG2325|consen 59 PYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNG--VKYLMLVA 136 (488)
T ss_pred hhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccc--hHHHHHHH
Confidence 34455 3333333 888899999999999999999999987 888999999999999888655533222 33333333
Q ss_pred HHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhc-------------cchhHHHHHHHH
Q psy8366 398 TCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSW-------------FGLHGTLFIYTL 464 (513)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-------------~g~~~~~~~~~~ 464 (513)
=+..+.+.+.....-.++++..-.++|.++++..+....+|.++||.+...+... .-|..+-++.++
T Consensus 137 R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i 216 (488)
T KOG2325|consen 137 RILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAI 216 (488)
T ss_pred HHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHH
Confidence 3333333345566667888876678888888888887778888888665332211 014567777788
Q ss_pred HHHHHHhheeEEcccCCC
Q psy8366 465 VSFLGFIYIYFYVPETED 482 (513)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~ 482 (513)
+.++..++..++.+|..+
T Consensus 217 ~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 217 LWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHHHHHHHhheeeccc
Confidence 888777766666666544
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.2e-06 Score=74.91 Aligned_cols=145 Identities=17% Similarity=0.178 Sum_probs=110.8
Q ss_pred hhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhc-chhhHHHHHhHHHHHHHHHHHhchh
Q psy8366 56 VVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYI-GRKRLMILVGFPFFLGWILLYLAET 134 (513)
Q Consensus 56 ~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~ 134 (513)
.-+|.+. .|-|+|..+.|++.+...+.....++..-.+++|. .+|+..+...+++.+|.+.+.+.+.
T Consensus 229 ~WLP~il------------i~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~ 296 (395)
T COG2807 229 GWLPAIL------------IDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG 296 (395)
T ss_pred HHHHHHH------------HHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh
Confidence 4578888 89999999999999999999999999999999965 5667777777777888887777765
Q ss_pred HHHHHHHHHHhhccccccccchhhhhhccCCcc-ccchhhhHhhHHHHHHHHHHHHHhhhH-----hHHHHHHhhhHHHH
Q psy8366 135 VSIIMLGTVCMGLSVGCCEAPIISYIGEISEPR-MRGSLSLFAGAACNFGVFIIFLIYALT-----DWRTTVLISAIFPI 208 (513)
Q Consensus 135 ~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~lG~~~~~~l~~~~-----~wr~~f~~~~~~~~ 208 (513)
-..+.- -++.|+|.|..++.+...+.+..++. +-++..++.+....+=..+||.+.+++ +|+...+..+...+
T Consensus 297 ~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i 375 (395)
T COG2807 297 QLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATL 375 (395)
T ss_pred hHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHH
Confidence 433333 49999999999999999999887543 334444444444444344567776665 89999888887777
Q ss_pred HHHHH
Q psy8366 209 LTMIM 213 (513)
Q Consensus 209 ~~~~~ 213 (513)
+..+.
T Consensus 376 ~m~i~ 380 (395)
T COG2807 376 LMLIF 380 (395)
T ss_pred HHHHH
Confidence 76664
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.1e-06 Score=81.22 Aligned_cols=165 Identities=11% Similarity=0.092 Sum_probs=99.9
Q ss_pred chhhhHHHHHH-hcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcc----cCCchHHH-HhhHHHHHHHHHHHHHHHhcCC
Q psy8366 315 PMRPFLVEIFR-TFGLPMKS-EWVLVLTGILSITGSFVSTITVNK----LGKRGMTL-WSTGINTFFTLMLSICAMNLQW 387 (513)
Q Consensus 315 ~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 387 (513)
....|+.+++. ..|+++.. +.+..+.-+...+.-++.|.++|| +||||..+ ++....+++..++...+.....
T Consensus 27 ~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~ 106 (460)
T PRK11462 27 NVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMN 106 (460)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcc
Confidence 34455555554 58998876 888889999999999999999996 57766654 5556666665544432200000
Q ss_pred CchhhH-HHHHHHHHHHhccccchhhhhhccccc-hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcc-------chhHH
Q psy8366 388 PGWIPL-TIFCTCFWVSGYGMLPLPWMLLSEVFP-LQVRGIASGITAASSSVVNFISTKTYINLTSWF-------GLHGT 458 (513)
Q Consensus 388 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------g~~~~ 458 (513)
...... +...+...+... ......++..|+.+ +++|++..+.-.....+|+.+++.+...+.+.. ||...
T Consensus 107 ~~~~y~~~~~~~~~~~~t~-~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~ 185 (460)
T PRK11462 107 GKMIYAAITYTLLTLLYTV-VNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGG 185 (460)
T ss_pred hHHHHHHHHHHHHHHHHHH-HhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHH
Confidence 111112 222222223222 22223367777765 688999999999999998888877765555433 34555
Q ss_pred HHHHHHHHHHHHhheeEEcccC
Q psy8366 459 LFIYTLVSFLGFIYIYFYVPET 480 (513)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~ 480 (513)
..+++++.+++..+++...+|+
T Consensus 186 ~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 186 IAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred HHHHHHHHHHHHHHHHhcceec
Confidence 5556665555555454444443
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.9e-06 Score=81.06 Aligned_cols=138 Identities=12% Similarity=0.188 Sum_probs=109.7
Q ss_pred HHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhcccc
Q psy8366 340 TGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVF 419 (513)
Q Consensus 340 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (513)
.++..++.+++.|.++||+|||..+.+......+..+.+.+.. |+.++...+ .+..........++++|..
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-------~~~~~~~~l--~g~~~~~~s~~~a~vadis 141 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-------YWFFLLLGL--SGGFSAIFSVGFAYVADIS 141 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-------HHHhhhccc--ccchhhhhhhhhhheeecc
Confidence 3778888999999999999999999888877777766666532 332222222 2222344566678999999
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeEEcccCCCCCHH
Q psy8366 420 PLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQ 486 (513)
Q Consensus 420 p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (513)
..+.|....|+.+.....+..++|.+.+.+....|+...+.+..+..++..+.....+||+..++.+
T Consensus 142 ~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 142 SEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 9999999999999999999999999999999999999999999999999888888888887655433
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.8e-06 Score=66.74 Aligned_cols=115 Identities=12% Similarity=0.079 Sum_probs=94.4
Q ss_pred ccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchh
Q psy8366 78 ILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPII 157 (513)
Q Consensus 78 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~ 157 (513)
++++..--.-.++.+....+++++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-.+.|++.+..+++--
T Consensus 33 ~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg 111 (156)
T PF05978_consen 33 SISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQG 111 (156)
T ss_pred cccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhh
Confidence 3344333445666677778888889999999999999999999998654443 566788999999999999999999999
Q ss_pred hhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhh
Q psy8366 158 SYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL 193 (513)
Q Consensus 158 ~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~ 193 (513)
.++.+...+++|++..++.......+.++|.++...
T Consensus 112 ~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 112 TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888888887766543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.3e-09 Score=102.69 Aligned_cols=143 Identities=15% Similarity=0.167 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhh
Q psy8366 334 EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWM 413 (513)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (513)
+.......++..+|+++.|+++||+|||+.+..+..+..++.++..+.... .+.+...+.-.+.+.+. .+..+....
T Consensus 49 ~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~R~~~G~~~-g~~~~~~~~ 125 (451)
T PF00083_consen 49 SLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY--NNFWMLLIGRFLIGFGI-GGAYVVSPI 125 (451)
T ss_pred HHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccc-ccccccccc
Confidence 567788899999999999999999999999999999988888777664311 12333333333333333 344566668
Q ss_pred hhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcc---chhHHHHHHHHHHHHHHhheeEEcccC
Q psy8366 414 LLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWF---GLHGTLFIYTLVSFLGFIYIYFYVPET 480 (513)
Q Consensus 414 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (513)
++.|..|++.|+...++.+....+|..++..+.-.+.+.. +|+..+.+.++..++..+ ...+.||.
T Consensus 126 ~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pES 194 (451)
T PF00083_consen 126 YISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLL-LRFFLPES 194 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 9999999999999999999988888777776554333322 377777666666655444 33455654
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.5e-07 Score=86.36 Aligned_cols=142 Identities=17% Similarity=0.090 Sum_probs=125.6
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhcccccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEA 154 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~ 154 (513)
+|.+-.+...|........|-.+.-++.+++..|+|+-+++.+++.+..+=.+..+..+|.|..+...+++|+..+..+.
T Consensus 399 ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWa 478 (618)
T KOG3762|consen 399 EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWA 478 (618)
T ss_pred hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHH
Confidence 67777777888888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhccCCccccchhhhHhhHH-----HHHHHHHHHHHhhhHhHHHHHHhhhHHHHHHHHHHHh
Q psy8366 155 PIISYIGEISEPRMRGSLSLFAGAA-----CNFGVFIIFLIYALTDWRTTVLISAIFPILTMIMIAF 216 (513)
Q Consensus 155 ~~~~~~~~~~~~~~r~~~~~~~~~~-----~~lG~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~ 216 (513)
+..+|+++..|++-|..+.++.+.. -++|.++|+.+...++=|..|.+.++.+++.+++...
T Consensus 479 a~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 479 AIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988887544 4678888888888889999999888888777664433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.4e-06 Score=75.12 Aligned_cols=140 Identities=15% Similarity=0.173 Sum_probs=116.1
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhh-hcchhhHHHHHhHHHHHHHHHHH---hchhHHHHHHHHHHhhcccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLE-YIGRKRLMILVGFPFFLGWILLY---LAETVSIIMLGTVCMGLSVG 150 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d-r~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~g~~ 150 (513)
+-||+|..+..-+.+....|..++....|++.. |.++|+.-.+|+.+..++..+.. ...+.+.+..+-++.|++.|
T Consensus 237 ~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G 316 (403)
T PF03209_consen 237 EVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNG 316 (403)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhh
Confidence 779999999999999999999999999999888 67888888888888777766654 44578899999999999999
Q ss_pred ccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH--------------hHHHHHHhhhHHHHHHHHHH
Q psy8366 151 CCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT--------------DWRTTVLISAIFPILTMIMI 214 (513)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~--------------~wr~~f~~~~~~~~~~~~~~ 214 (513)
.......+.+.+..++++.|..+|.+.....++..++..+++.. +|-..|.+.++..++..++.
T Consensus 317 ~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 317 LFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988876665555554332 67778888877776666644
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.5e-07 Score=82.54 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=98.0
Q ss_pred hhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhH--------HHHHHHHHHhhccccccccchhhhhhccCC
Q psy8366 94 FHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETV--------SIIMLGTVCMGLSVGCCEAPIISYIGEISE 165 (513)
Q Consensus 94 ~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--------~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~ 165 (513)
++..+-.+...+.|+.|||++.+.|.+++++..+..+...|. ....+..++.-+| .......+-+|.+|
T Consensus 360 ~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FP 436 (538)
T KOG0252|consen 360 STVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFP 436 (538)
T ss_pred ccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhch
Confidence 444466777888999999999999999999999999888771 1222333444444 33445567789999
Q ss_pred ccccchhhhHhhHHHHHHHHHHHHHhhh---------HhHHHHHHhhhHHHHHHHHHHHhccCch
Q psy8366 166 PRMRGSLSLFAGAACNFGVFIIFLIYAL---------TDWRTTVLISAIFPILTMIMIAFIPESP 221 (513)
Q Consensus 166 ~~~r~~~~~~~~~~~~lG~~~~~~l~~~---------~~wr~~f~~~~~~~~~~~~~~~~~~e~p 221 (513)
.+-|+...++..+..-.|.+++...-.. .+.|+.|++.+...++..+..+++||+.
T Consensus 437 arvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk 501 (538)
T KOG0252|consen 437 ARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETK 501 (538)
T ss_pred HHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence 9999999999999988888888665333 3889999999999999988888899984
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00052 Score=68.37 Aligned_cols=152 Identities=13% Similarity=0.164 Sum_probs=116.2
Q ss_pred cccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhh-cchhhHHHHHhHHHHHHHHHHH
Q psy8366 52 GMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEY-IGRKRLMILVGFPFFLGWILLY 130 (513)
Q Consensus 52 ~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~ 130 (513)
++....+..+. .++|.+...+.-..+.+.-......+..++++|- +||-+++.++.++..+|..+..
T Consensus 55 g~~~nlv~ylt------------~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt 122 (571)
T KOG1237|consen 55 GLVSNLVTYLT------------LELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLT 122 (571)
T ss_pred cchhHHHHHHH------------HHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666 7888888888888888888888889999999997 5899999999999988866654
Q ss_pred hchh-------------------------HHHHHHHHHHhhccccccccchhhhhhccCC---ccc---cchhhhHhhHH
Q psy8366 131 LAET-------------------------VSIIMLGTVCMGLSVGCCEAPIISYIGEISE---PRM---RGSLSLFAGAA 179 (513)
Q Consensus 131 ~~~~-------------------------~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~---~~~---r~~~~~~~~~~ 179 (513)
++.. ...+..+.-+..+|.|+.-+...++-+|-++ +++ +...+.++...
T Consensus 123 ~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~ 202 (571)
T KOG1237|consen 123 LSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFS 202 (571)
T ss_pred HHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHH
Confidence 4321 2356677788889999999999999999997 222 23577788888
Q ss_pred HHHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHHHHHH
Q psy8366 180 CNFGVFIIFLIYALT----DWRTTVLISAIFPILTMIMIA 215 (513)
Q Consensus 180 ~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~ 215 (513)
.++|.+++..+.-+. +|.+.|.+.....++++++++
T Consensus 203 ~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 203 QNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred HHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHH
Confidence 888888877665444 999999888877776665433
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.4e-05 Score=69.59 Aligned_cols=158 Identities=13% Similarity=0.115 Sum_probs=97.6
Q ss_pred hhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHH
Q psy8366 318 PFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIF 396 (513)
Q Consensus 318 ~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (513)
+|.-..++++|++..+ +.++........+...+.|.++||+|||+..+...++..++++.... +....+++.
T Consensus 55 pY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-------~~~~~L~~G 127 (354)
T PF05631_consen 55 PYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-------SNYPVLLLG 127 (354)
T ss_pred chhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-------cccHHHHHH
Confidence 4444555789998887 77777888888888999999999999999888887887777754332 233333333
Q ss_pred HHHHHHHhccccchh-hhhhccc----cchhhhhHHHHHHHHH-HHHHHHHHHHHhhhhhhccch--hHHHHHHHHHHHH
Q psy8366 397 CTCFWVSGYGMLPLP-WMLLSEV----FPLQVRGIASGITAAS-SSVVNFISTKTYINLTSWFGL--HGTLFIYTLVSFL 468 (513)
Q Consensus 397 ~~~~~~~~~~~~~~~-~~~~~~~----~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g~--~~~~~~~~~~~~~ 468 (513)
=++++.......+.. .-++.|. +|++..+...+...+. +.+..+++..+...+.+..|. ..+|.....+.++
T Consensus 128 RvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~ 207 (354)
T PF05631_consen 128 RVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAV 207 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 233332222222221 1244443 5656666666655533 334445555555566666554 6788887777777
Q ss_pred HHhheeEEcccCCC
Q psy8366 469 GFIYIYFYVPETED 482 (513)
Q Consensus 469 ~~~~~~~~~~~~~~ 482 (513)
+.+++....+|..+
T Consensus 208 ~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 208 AAVLILKTWPENYG 221 (354)
T ss_pred HHHHHHhcccccCC
Confidence 77665555555543
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00035 Score=66.24 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=81.4
Q ss_pred HHHHhhhcccccccchhhhhhcccccccccccCCCC--cccchhhHHHHHHHHhhhhhhhHHHHHHhhh-----hcchhh
Q psy8366 41 NFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPD--LILSDEQSSWLGSILFLFHPFGSIISGYFLE-----YIGRKR 113 (513)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~--~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d-----r~Grr~ 113 (513)
.++.+.-|...+.....+|.+. ++ -++|.+|.|...-+ ...+. .-++|.++.| |+||||
T Consensus 6 ~~LY~lQGiP~GL~~gsiPflL------------~~~~~~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRK 71 (544)
T PF13000_consen 6 VLLYFLQGIPLGLAFGSIPFLL------------QSMAKKVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRK 71 (544)
T ss_pred HHHHHHcCcccccccccchhhh------------ccccCCCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcc
Confidence 3456667888887767889888 44 67788777653211 11111 3455666666 899999
Q ss_pred HHH------HHhHHHHHHHHHH----------Hh-------ch--hHHHHHHHHHHhhccccccccchhhhhhccCCccc
Q psy8366 114 LMI------LVGFPFFLGWILL----------YL-------AE--TVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRM 168 (513)
Q Consensus 114 ~~~------~~~~~~~~~~~~~----------~~-------~~--~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~ 168 (513)
.-+ .|..+..++.-.. .. .+ +...+...-++.=+-.+--..+.-.+.-....+++
T Consensus 72 SWiiP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n 151 (544)
T PF13000_consen 72 SWIIPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPEN 151 (544)
T ss_pred hhhhHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhh
Confidence 833 3333333333220 00 00 11123333333434445556666677777778899
Q ss_pred cchhhhHhhHHHHHHHHHHHHH
Q psy8366 169 RGSLSLFAGAACNFGVFIIFLI 190 (513)
Q Consensus 169 r~~~~~~~~~~~~lG~~~~~~l 190 (513)
++.+..-...+.+.|..++..+
T Consensus 152 ~~~ASTcqtvG~~~Gyfls~tv 173 (544)
T PF13000_consen 152 VGYASTCQTVGQTAGYFLSFTV 173 (544)
T ss_pred cchHHHHHHhHhhhhHHHHHHH
Confidence 9999998888888888887655
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0011 Score=62.87 Aligned_cols=115 Identities=14% Similarity=0.056 Sum_probs=80.0
Q ss_pred chhhHHHHHHHHhh-hhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhc---------hh---------------
Q psy8366 80 SDEQSSWLGSILFL-FHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLA---------ET--------------- 134 (513)
Q Consensus 80 s~~~~~~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---------~~--------------- 134 (513)
.++.+.++-+..-+ +..+..++.+++.+++.|.+++-+-+..+....+++++. ++
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 45667888888777 677889999999999999999888887777777777653 11
Q ss_pred --------HHHHHHHHHHhhcccccccc-chhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH
Q psy8366 135 --------VSIIMLGTVCMGLSVGCCEA-PIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT 194 (513)
Q Consensus 135 --------~~~l~~~r~l~G~g~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~ 194 (513)
.|...+...+.=+-.+.... .-.....|.+..+|-.|..++++.+.+++.++++.+...+
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~ 207 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL 207 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 02222222222221111111 2335567888889999999999999999999988886665
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00071 Score=65.46 Aligned_cols=110 Identities=8% Similarity=-0.013 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhcccCCc-hHHHHhhHHHHHHHHHHHHHHHhcC-------CCchhhHHHHHHHHHHHhc
Q psy8366 334 EWVLVLTGILSITGSFVSTITVNKLGKR-GMTLWSTGINTFFTLMLSICAMNLQ-------WPGWIPLTIFCTCFWVSGY 405 (513)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 405 (513)
-.......++..+|+.+..+.. +-++| +.+.+..+.=.+..-++.++..... .+.+..++...+++... +
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn-G 387 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN-G 387 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh-h
Confidence 3566778899999998765432 22222 1333333333333333333321110 13444444444444433 3
Q ss_pred cccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8366 406 GMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKT 445 (513)
Q Consensus 406 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 445 (513)
........+..+..++++|..+..+....-.+|-.+|+.+
T Consensus 388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555678888888999888888888888887777755
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.3e-05 Score=56.05 Aligned_cols=59 Identities=19% Similarity=0.254 Sum_probs=50.1
Q ss_pred cccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHH
Q psy8366 52 GMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPF 122 (513)
Q Consensus 52 ~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 122 (513)
+...|.+|... ++.|++..++|.+.++..+...++.+++|.++||+|+++.++....+.
T Consensus 17 g~~~Pfl~~~~------------~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 17 GCLYPFLPLYL------------KQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHhhhhHhh------------hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 33446666666 789999999999999999999999999999999999999877765543
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0059 Score=59.68 Aligned_cols=115 Identities=15% Similarity=0.115 Sum_probs=76.1
Q ss_pred chhhHHHHHHHHhh-hhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhc---------h----------------
Q psy8366 80 SDEQSSWLGSILFL-FHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLA---------E---------------- 133 (513)
Q Consensus 80 s~~~~~~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---------~---------------- 133 (513)
.++.+.++-....+ ...+......+++++++|.+++-+....+.....+.++. +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 44556666554444 344557778999999999999877766666555555542 0
Q ss_pred ------hHHHHHHHHHHhhcccccccc-chhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH
Q psy8366 134 ------TVSIIMLGTVCMGLSVGCCEA-PIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT 194 (513)
Q Consensus 134 ------~~~~l~~~r~l~G~g~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~ 194 (513)
+.|.+.+..++.-+-...... .-..+..|.++.+|-.|..+++..+.++|.++++.+...+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222333333332222222 3467788999999999999999999999999988876555
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00024 Score=72.11 Aligned_cols=149 Identities=13% Similarity=0.031 Sum_probs=98.8
Q ss_pred HhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcc-cCCchHHHHhhHHHHHHHHHHHHHHHhcCCCc--hhhHHHHHHHH
Q psy8366 325 RTFGLPMKS-EWVLVLTGILSITGSFVSTITVNK-LGKRGMTLWSTGINTFFTLMLSICAMNLQWPG--WIPLTIFCTCF 400 (513)
Q Consensus 325 ~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 400 (513)
+..|++... ...........-+..+++|+++|+ +|+++.+.++.++..++..++.+......... .....+.+.++
T Consensus 16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLi 95 (654)
T TIGR00926 16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALI 95 (654)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHH
Confidence 456777665 455555555666777888999995 79999999998888888877765321110001 11122222233
Q ss_pred HHHhccccchhhhhhccccchh---hhhHHHHHHHHHHHHHHHHHHHHhhhhhhcc-------chhHHHHHHHHHHHHHH
Q psy8366 401 WVSGYGMLPLPWMLLSEVFPLQ---VRGIASGITAASSSVVNFISTKTYINLTSWF-------GLHGTLFIYTLVSFLGF 470 (513)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------g~~~~~~~~~~~~~~~~ 470 (513)
.++..+.-|...+...|.++++ .+...+.+.....++|+.+++.+.+++.+.. +|...|.+.+++.+++.
T Consensus 96 a~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~ 175 (654)
T TIGR00926 96 ALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILAL 175 (654)
T ss_pred HhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHH
Confidence 3333445566667778877643 4778888899999999999999999887543 57778888777777766
Q ss_pred hhe
Q psy8366 471 IYI 473 (513)
Q Consensus 471 ~~~ 473 (513)
++.
T Consensus 176 lvf 178 (654)
T TIGR00926 176 IVF 178 (654)
T ss_pred HHH
Confidence 544
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.8e-05 Score=52.85 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=53.1
Q ss_pred HHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHH
Q psy8366 308 TIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGI 370 (513)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 370 (513)
..+++...+..|.+.++++.|++..+ +.+..+..+..+++.++.|.++||.++++.......+
T Consensus 11 ~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 11 FYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 34444666778999999999999987 9999999999999999999999999998877655443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00088 Score=64.13 Aligned_cols=104 Identities=18% Similarity=0.286 Sum_probs=84.1
Q ss_pred hHHHHHhHHHHHHHHHHHhch---h------HHHHHHHHHHhhccccccccchhhhhhccCCcc---ccchhhhHhhHHH
Q psy8366 113 RLMILVGFPFFLGWILLYLAE---T------VSIIMLGTVCMGLSVGCCEAPIISYIGEISEPR---MRGSLSLFAGAAC 180 (513)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~---~------~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~ 180 (513)
|++++|.++..+|.++..++. + .+.++++-.+.++|.|+.-|...++.+|.++++ +|.+...++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 678889999999999854432 2 267899999999999999999999999999865 3566788889999
Q ss_pred HHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHHHHHHh
Q psy8366 181 NFGVFIIFLIYALT----DWRTTVLISAIFPILTMIMIAF 216 (513)
Q Consensus 181 ~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~ 216 (513)
++|.+++..+..++ +|.+.|.+.++..++..+..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 99999998887766 8999999998888877775544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00039 Score=67.69 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=90.7
Q ss_pred HHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccC----C-chHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHH
Q psy8366 324 FRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLG----K-RGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFC 397 (513)
Q Consensus 324 ~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (513)
.+++|+++.+ ........+ --...++.|.++|-+. | |..++++.++..++.+.+...... ..+.....++++
T Consensus 17 ~~~l~ls~~~~~~~~~~~~l-Pw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~-~~s~~~~~~~l~ 94 (433)
T PF03092_consen 17 KDDLGLSPAQLQRLSSLASL-PWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS-ESSAAIAVVLLF 94 (433)
T ss_pred HHHcCCCHHHHHHHHHHHhC-chHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc-cchhhhHHHHHH
Confidence 3568888766 333333322 2345678899999863 4 444555666665555555554311 011111112222
Q ss_pred HHHHHHhccccchhhhhhcccc---chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhhee
Q psy8366 398 TCFWVSGYGMLPLPWMLLSEVF---PLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 474 (513)
+...+. ...-...-+...|.. |.+ +|...+.......+|+.++..+.|.+.+..+++..|.+.+.+..+..+...
T Consensus 95 la~~g~-a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~ 172 (433)
T PF03092_consen 95 LASFGY-AFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVAL 172 (433)
T ss_pred HHHHHH-HHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHH
Confidence 221111 111223334555553 433 788888999999999999999999999999988888888777777665555
Q ss_pred EEccc
Q psy8366 475 FYVPE 479 (513)
Q Consensus 475 ~~~~~ 479 (513)
...+|
T Consensus 173 ~~~~e 177 (433)
T PF03092_consen 173 FLLEE 177 (433)
T ss_pred Hhhhh
Confidence 55555
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.61 E-value=1e-05 Score=80.35 Aligned_cols=164 Identities=13% Similarity=0.020 Sum_probs=0.0
Q ss_pred chhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcC-------
Q psy8366 315 PMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQ------- 386 (513)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 386 (513)
.....++.+=+.++++..+ |++.+..-++.++..++..++.+|..|-+.+-.+.++++++.+++.+-.+..+
T Consensus 21 ~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~ 100 (539)
T PF03137_consen 21 YVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEA 100 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccc
Confidence 3333444443568888776 89999999999999999999999988888888899999988887776432200
Q ss_pred ----------------------------------CCchhhHHHHHHHHHHH---hccccchhhhhhccccchhhhhHHHH
Q psy8366 387 ----------------------------------WPGWIPLTIFCTCFWVS---GYGMLPLPWMLLSEVFPLQVRGIASG 429 (513)
Q Consensus 387 ----------------------------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~g 429 (513)
...+....++++..... +...+++..+++-|.+++++.+...|
T Consensus 101 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiG 180 (539)
T PF03137_consen 101 SNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIG 180 (539)
T ss_dssp ---------------------------------------------------SSS--------------------------
T ss_pred cccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchh
Confidence 00111122222222222 23345677789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhc---------------------cc-hhHHHHHHHHHHHHHHhheeEEcc
Q psy8366 430 ITAASSSVVNFISTKTYINLTSW---------------------FG-LHGTLFIYTLVSFLGFIYIYFYVP 478 (513)
Q Consensus 430 ~~~~~~~~g~~~~~~~~g~l~~~---------------------~g-~~~~~~~~~~~~~~~~~~~~~~~~ 478 (513)
+..+...+|-++|-.+++...+. .| |+.-|++.+.+.++..+..+.+.|
T Consensus 181 i~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk 251 (539)
T PF03137_consen 181 ILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPK 251 (539)
T ss_dssp -----------------------------------------------------------------------
T ss_pred hhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999988888887777655532 12 555566666666666554444433
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.002 Score=60.46 Aligned_cols=126 Identities=18% Similarity=0.179 Sum_probs=81.9
Q ss_pred cCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhc-CCCchhhHHHHHHHHHHHh
Q psy8366 327 FGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNL-QWPGWIPLTIFCTCFWVSG 404 (513)
Q Consensus 327 ~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 404 (513)
+| +.+. .+...+..+..++..+.+-|+.||+|-|....++..+.+++..+=....... ++..+-.+....-......
T Consensus 75 Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~A 153 (480)
T KOG2563|consen 75 YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAA 153 (480)
T ss_pred hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHh
Confidence 45 3333 6778889999999999999999999999999999999888877655543110 0122211111111111111
Q ss_pred ccc-cchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy8366 405 YGM-LPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWF 453 (513)
Q Consensus 405 ~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 453 (513)
..+ .....=...-.+|+++|+++..+..+...+|.+++-.+-..+..+.
T Consensus 154 q~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 154 QPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred hhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 111 1111123444589999999999999999999999888877776554
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0045 Score=53.84 Aligned_cols=51 Identities=18% Similarity=0.373 Sum_probs=37.3
Q ss_pred cccchhhhHhhHHHHHHHHHH--HHHhh-----hH--hHHHHHHhhhHHHHHHHHHHHhc
Q psy8366 167 RMRGSLSLFAGAACNFGVFII--FLIYA-----LT--DWRTTVLISAIFPILTMIMIAFI 217 (513)
Q Consensus 167 ~~r~~~~~~~~~~~~lG~~~~--~~l~~-----~~--~wr~~f~~~~~~~~~~~~~~~~~ 217 (513)
|+|+..+.+...+.++|.++. |.+.. .. +|++.+.+.+++.++.+++...+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888888888899998775 33322 11 89999999998887777755443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.011 Score=57.57 Aligned_cols=116 Identities=12% Similarity=0.081 Sum_probs=75.4
Q ss_pred HHHHHHHHHH-HHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCC-------------------------
Q psy8366 334 EWVLVLTGIL-SITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQW------------------------- 387 (513)
Q Consensus 334 ~~~~~~~~~~-~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 387 (513)
.++-....+. .++..++.+++++|++|++............++++....+...+
T Consensus 46 ~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~ 125 (472)
T TIGR00769 46 PFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAI 125 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHH
Confidence 3333333333 33337888999999999998876666655555555544321111
Q ss_pred -CchhhHHHHHHHHHHHhccccc-hhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8366 388 -PGWIPLTIFCTCFWVSGYGMLP-LPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLT 450 (513)
Q Consensus 388 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 450 (513)
..|......... -..+....+ ..|.+++|.+..++..+-.++....+++|..+++.+...+.
T Consensus 126 ~~~W~~~~FYv~~-elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 126 LRIWSFALFYVMA-ELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222222 222223333 77899999999999999999999999999999998888776
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.011 Score=47.82 Aligned_cols=107 Identities=10% Similarity=-0.038 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhh
Q psy8366 334 EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWM 413 (513)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (513)
.....+......+++++.+.+.+++|.|+.++++.+...+-....... +.+..+....+.+.+.+ ..+...-.
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~------~~~~l~~~s~l~G~~~a-~lW~aqg~ 112 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP------NSYTLYPASALLGFGAA-LLWTAQGT 112 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHhhhhH-HhhHhhhH
Confidence 355666777788888999999999999999999988887655554332 34444444445555443 33444457
Q ss_pred hhccccchhhhhHHHHHHHHHHHHHHHHHHHHhh
Q psy8366 414 LLSEVFPLQVRGIASGITAASSSVVNFISTKTYI 447 (513)
Q Consensus 414 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 447 (513)
++.+...++.+++..|+.-.+.+.+.++|..+.-
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888899999999988888888777775543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0086 Score=56.56 Aligned_cols=154 Identities=12% Similarity=-0.005 Sum_probs=94.5
Q ss_pred hchhhhHHHHHHh--cCCCchh-H-HHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCc
Q psy8366 314 QPMRPFLVEIFRT--FGLPMKS-E-WVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPG 389 (513)
Q Consensus 314 ~~~~~~~~~~~~~--~g~~~~~-~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
-...+|+..|+.+ .|++.++ . -+.-+..=..++.-+....+.|.++.|..++++.+...+...++.+.. +.
T Consensus 20 rPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~-----sv 94 (412)
T PF01770_consen 20 RPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT-----SV 94 (412)
T ss_pred CCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC-----cH
Confidence 3444565555543 7777665 2 333333334455566778889999999999888887777776666543 23
Q ss_pred hhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcc--chhHHHHHHHHHHH
Q psy8366 390 WIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWF--GLHGTLFIYTLVSF 467 (513)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~ 467 (513)
+...+.-++.+.. .+.-...++++-...|+++--++.+.......+|..++..++..+.+.. .+.....+..+...
T Consensus 95 ~~mq~~q~~yg~~--~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~ 172 (412)
T PF01770_consen 95 LAMQLMQFFYGLA--TAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVS 172 (412)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3222222333222 2333444567777778888889999999988888888888877766633 34444444444444
Q ss_pred HHHhhee
Q psy8366 468 LGFIYIY 474 (513)
Q Consensus 468 ~~~~~~~ 474 (513)
++.++.+
T Consensus 173 ~a~~~~~ 179 (412)
T PF01770_consen 173 LALLIAL 179 (412)
T ss_pred HHHHHHH
Confidence 4444433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.12 Score=48.51 Aligned_cols=102 Identities=7% Similarity=-0.035 Sum_probs=52.9
Q ss_pred HHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHh----cCCCchhhHHHHHHHHHHHhccccchhhhhh
Q psy8366 340 TGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMN----LQWPGWIPLTIFCTCFWVSGYGMLPLPWMLL 415 (513)
Q Consensus 340 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (513)
..+...+|.+...++-++- +|.+.+...+-.+..-++..+.+. .-.+.++..+...+++... +-.......+.
T Consensus 292 fN~~d~vG~~~a~~~~~~~--~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsn-GYltsl~m~~a 368 (406)
T KOG1479|consen 292 FNVFDLIGSILAALLTWPD--PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSN-GYLTSLIMMYA 368 (406)
T ss_pred hHHHHHhhhhhhhcccCCC--CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhcc-chHhhheehhc
Confidence 6777888866666654433 333333333333333333322210 0113344444444444333 33455666788
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHH
Q psy8366 416 SEVFPLQVRGIASGITAASSSVVNFISTK 444 (513)
Q Consensus 416 ~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 444 (513)
++.+|++++-.+..+....-..|-+.|..
T Consensus 369 Pk~v~~~e~e~aG~~m~~fl~~Gl~~G~~ 397 (406)
T KOG1479|consen 369 PKQVKPSEKEAAGNLMVFFLVGGLALGSL 397 (406)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHhhH
Confidence 88888888777666666666566555543
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0051 Score=62.04 Aligned_cols=156 Identities=8% Similarity=0.010 Sum_probs=107.4
Q ss_pred HhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcC-----------------
Q psy8366 325 RTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQ----------------- 386 (513)
Q Consensus 325 ~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 386 (513)
+.++++... |++....-++..+...+..+...|..|-+.+-++.++++++.++..+-.+..+
T Consensus 125 rRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~ 204 (735)
T KOG3626|consen 125 RRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPS 204 (735)
T ss_pred hhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCc
Confidence 357777665 77777788888888888889999999989999999999998888876532100
Q ss_pred --------------------------CC---chhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHH
Q psy8366 387 --------------------------WP---GWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSV 437 (513)
Q Consensus 387 --------------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 437 (513)
.. .|..+++.-++.+.+.....+...+++-|...+++.....|+..++..+
T Consensus 205 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~l 284 (735)
T KOG3626|consen 205 SSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAIL 284 (735)
T ss_pred cccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHh
Confidence 01 1222222223333333444566678999999989999999999999988
Q ss_pred HHHHHHHHhhhhhhcc------------------c-hhHHHHHHHHHHHHHHhheeEEcccCC
Q psy8366 438 VNFISTKTYINLTSWF------------------G-LHGTLFIYTLVSFLGFIYIYFYVPETE 481 (513)
Q Consensus 438 g~~~~~~~~g~l~~~~------------------g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (513)
|-++|-.+++.+...+ | |+.-|++.+.+.++..+..+++ |+..
T Consensus 285 GPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~f-Pk~l 346 (735)
T KOG3626|consen 285 GPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFF-PKEL 346 (735)
T ss_pred hhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhC-cccC
Confidence 8888877776654321 2 5566777777777777655544 4433
|
|
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0023 Score=56.59 Aligned_cols=131 Identities=17% Similarity=0.135 Sum_probs=84.1
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhcc
Q psy8366 84 SSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEI 163 (513)
Q Consensus 84 ~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~ 163 (513)
.|.+.-+-.+...+..+-+....||+.--.-..+..++.+.+.++.+++++.++-+.+-.+..++.|.....-.++.+.+
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y 143 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRY 143 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccC
Confidence 34444445555556666667777876543334456677788888999999999999999999999987776665554333
Q ss_pred CCccccchhhhHhhHHHHHHHHHHHHHhhh------HhHHHHHHhhhHHHHHHHHHHHhccC
Q psy8366 164 SEPRMRGSLSLFAGAACNFGVFIIFLIYAL------TDWRTTVLISAIFPILTMIMIAFIPE 219 (513)
Q Consensus 164 ~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~------~~wr~~f~~~~~~~~~~~~~~~~~~e 219 (513)
+ ....+.+..+.+.+.++|..-... ++-|...++...+.++..+..+++-+
T Consensus 144 -~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~ 200 (409)
T KOG3880|consen 144 -P----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLK 200 (409)
T ss_pred -C----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeC
Confidence 2 233444444444444555433222 26778888888777777666555433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.02 Score=55.02 Aligned_cols=118 Identities=12% Similarity=0.122 Sum_probs=91.1
Q ss_pred cccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHh---c---h----hHHHHHHHHHHhh
Q psy8366 77 LILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYL---A---E----TVSIIMLGTVCMG 146 (513)
Q Consensus 77 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~---~----~~~~l~~~r~l~G 146 (513)
-|+++..+|..-+...+....+.+...++.+|+|..|.=++++..-.....++.. . + +...++.+-.+.=
T Consensus 288 ~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR 367 (432)
T PF06963_consen 288 QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSR 367 (432)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHH
Confidence 3999999999999999999999999999999999999877777655444444322 1 1 3444555555555
Q ss_pred ccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH
Q psy8366 147 LSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT 194 (513)
Q Consensus 147 ~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~ 194 (513)
+|.=+...+..-++.|..|+++||...+.-....++-.++...++-.+
T Consensus 368 ~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 368 IGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 565567777888999999999999999999988888777766665544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.067 Score=49.31 Aligned_cols=145 Identities=22% Similarity=0.257 Sum_probs=88.2
Q ss_pred hhhHHHHHHhcCCCc---hhHHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhH
Q psy8366 317 RPFLVEIFRTFGLPM---KSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPL 393 (513)
Q Consensus 317 ~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (513)
....+.+....+.+. ..+.......+...++.++.|.+.||.|||+.+..+.....++.+...... . ......
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~ 97 (338)
T COG0477 22 SPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP---N-VGLALL 97 (338)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc---c-chHHHH
Confidence 344555555555444 237777788888888889999999999999777766655333323333222 1 112222
Q ss_pred HHHHHHHHHHhccccchhhhhhccccch-hhhhHHHHHHHH-HHHHHHHHHHHHhhhhhhc--cchhHHHHHHHHH
Q psy8366 394 TIFCTCFWVSGYGMLPLPWMLLSEVFPL-QVRGIASGITAA-SSSVVNFISTKTYINLTSW--FGLHGTLFIYTLV 465 (513)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~~~ 465 (513)
.......+.......+....+..|..|+ +.|+...+.... ...++..+++.+.+.+... .+|+..+......
T Consensus 98 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (338)
T COG0477 98 LILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALL 173 (338)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 2222222222224556777889999887 678888888888 5777888888666665544 4566544444333
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.01 Score=56.05 Aligned_cols=114 Identities=17% Similarity=0.108 Sum_probs=82.7
Q ss_pred cccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhH--HHHH---HHHHHHhchhHHHHHHHHHHhhccccc
Q psy8366 77 LILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGF--PFFL---GWILLYLAETVSIIMLGTVCMGLSVGC 151 (513)
Q Consensus 77 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~--~~~~---~~~~~~~~~~~~~l~~~r~l~G~g~~~ 151 (513)
+.-..++..+...+|.+|-.++.--...+ |+ |++.+.+.+ +..+ .....-+.++.|..++.-+..|+..|.
T Consensus 276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa 351 (402)
T PF02487_consen 276 FFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGA 351 (402)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhH
Confidence 33345677888888888766664322111 33 333333222 2222 222234567899999999999999999
Q ss_pred cccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH
Q psy8366 152 CEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT 194 (513)
Q Consensus 152 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~ 194 (513)
.++.....+.|-.++++|...++....+-++|.+++++++-.+
T Consensus 352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.041 Score=53.03 Aligned_cols=102 Identities=14% Similarity=0.178 Sum_probs=78.9
Q ss_pred hhhhhhhHHHHHHhhh---hcchhhHHHHHhHHHHHHHHHHHhc------------------hhHHHHHHHHHHhhcccc
Q psy8366 92 FLFHPFGSIISGYFLE---YIGRKRLMILVGFPFFLGWILLYLA------------------ETVSIIMLGTVCMGLSVG 150 (513)
Q Consensus 92 ~l~~~i~~~~~g~l~d---r~Grr~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G~g~~ 150 (513)
.+|..+++.+.+.+.+ ++||++.+.++.++..++.++.-.. +++...++.-++.|++-+
T Consensus 289 g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~ 368 (461)
T KOG3098|consen 289 GLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDA 368 (461)
T ss_pred hHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHH
Confidence 3444455555666664 6899999999999998888887543 246677888899999999
Q ss_pred ccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH
Q psy8366 151 CCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT 194 (513)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~ 194 (513)
......+.++.+.+ +++|..+.++...-..++..++.......
T Consensus 369 ~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 369 CFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999 77888888888888887777765554443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.015 Score=41.25 Aligned_cols=68 Identities=12% Similarity=0.164 Sum_probs=58.8
Q ss_pred chhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHH
Q psy8366 315 PMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICA 382 (513)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 382 (513)
.+...+|...++.+++..+ +++.+...++.++|.+...++.++.++++.+..+.+...+..+.+.+..
T Consensus 10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446788888899999887 8999999999999999999999998888888999888888888887764
|
Note that many members are hypothetical proteins. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.062 Score=53.55 Aligned_cols=135 Identities=16% Similarity=0.121 Sum_probs=73.7
Q ss_pred CcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHH-HhHHHH-HHHHHH----HhchhH-HHHHHHHHHhhcc
Q psy8366 76 DLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMIL-VGFPFF-LGWILL----YLAETV-SIIMLGTVCMGLS 148 (513)
Q Consensus 76 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~-~~~~~~----~~~~~~-~~l~~~r~l~G~g 148 (513)
-+|-+..+.+.+.+++.+|.++|+.+.+++.++.-|+...+- +..+.+ ++..+. .+...+ ..++..-++.++.
T Consensus 44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l 123 (521)
T PRK03612 44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLL 123 (521)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888999999999999999999988744333332111 111111 111111 111111 1223345667777
Q ss_pred ccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH-----hHHHHHHhhhHHHHHHH
Q psy8366 149 VGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT-----DWRTTVLISAIFPILTM 211 (513)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~-----~wr~~f~~~~~~~~~~~ 211 (513)
.|+..|....+..+.. .++-++..|-......+|.++|.++..++ |-....++.+.+.++..
T Consensus 124 ~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 124 IGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred HHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 8888887777665533 22234555556666666666666655443 44334444444444333
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.003 Score=59.35 Aligned_cols=150 Identities=10% Similarity=0.020 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcc----cCCchHHHHh-hH
Q psy8366 296 RPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNK----LGKRGMTLWS-TG 369 (513)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~~~-~~ 369 (513)
+..+....+.+..+++ +..-..|.+.+++..|.+.+- +.......+.+++.+++.|..+|| +||||..+.. ..
T Consensus 32 ~~li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 4444445555555554 555567888888888887665 677777788889999999999995 7888877654 44
Q ss_pred HHHHHHHHHHHHHHh-----cCCCc--h-hhHHHH----HHHHHHHhccccchhhhhhccccchhhhhH-HHHHHHHHHH
Q psy8366 370 INTFFTLMLSICAMN-----LQWPG--W-IPLTIF----CTCFWVSGYGMLPLPWMLLSEVFPLQVRGI-ASGITAASSS 436 (513)
Q Consensus 370 ~~~~~~~~~~~~~~~-----~~~~~--~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~~~ 436 (513)
...++++++.+.... ++... . ..+.+. .+.-+..... ....-++..|+..++++.+ +++....+..
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~-qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~a 189 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTL-QGPCRALLADLARGDAKKTRANSVFSFFMA 189 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhh-hhhHHHHHHHhccChhhhhccchhHHHHHH
Confidence 455555555543322 11111 0 111111 1111222122 2333478888877777777 9999999999
Q ss_pred HHHHHHHHHhh
Q psy8366 437 VVNFISTKTYI 447 (513)
Q Consensus 437 ~g~~~~~~~~g 447 (513)
+|+.+|-.+.+
T Consensus 190 vGnvLGY~~g~ 200 (498)
T KOG0637|consen 190 VGNVLGYALGS 200 (498)
T ss_pred hcceeeeeccc
Confidence 99888876655
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.039 Score=52.85 Aligned_cols=112 Identities=11% Similarity=-0.012 Sum_probs=76.7
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHhcCC----CchhhHHHHHHHHHHHhccccchhhhhhccccchh---hhhHHHHHHHHH
Q psy8366 362 GMTLWSTGINTFFTLMLSICAMNLQW----PGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQ---VRGIASGITAAS 434 (513)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~ 434 (513)
+++.++..+..++.+++.+....... ......+.+.++ ..+..+.-|....+..|.++++ +|...+......
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~li-a~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~ 80 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALI-AVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG 80 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHH-HHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHH-HhccccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 46777888888888886665422111 112233333333 3333456677778888888765 567788888999
Q ss_pred HHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhhee
Q psy8366 435 SSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 435 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 474 (513)
.++|..+++.+.+++.+..||...|.+.++..+++.+..+
T Consensus 81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888877766543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.25 Score=48.60 Aligned_cols=109 Identities=9% Similarity=0.017 Sum_probs=70.3
Q ss_pred HHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHh-----cCC---------------------CchhhHHHH
Q psy8366 343 LSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMN-----LQW---------------------PGWIPLTIF 396 (513)
Q Consensus 343 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---------------------~~~~~~~~~ 396 (513)
+.++...+..++++++++.++..+..........++++..+. +.+ ..|...+..
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 445556678899999999988766655555555555543321 110 112111111
Q ss_pred HHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy8366 397 CTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTS 451 (513)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 451 (513)
+..-..+.....-..|.+++|.++.++..+-.++.....++|..+++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111122233568899999999999999999999999999999988877776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3097|consensus | Back alignment and domain information |
|---|
Probab=95.81 E-value=1.4 Score=40.07 Aligned_cols=72 Identities=19% Similarity=0.309 Sum_probs=54.7
Q ss_pred hhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccC
Q psy8366 92 FLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEIS 164 (513)
Q Consensus 92 ~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~ 164 (513)
.+..+..+++.+.+..++|-|.++.++...+...- ..=+-+.+..++..-.+.|++.+..+..--+|+++.-
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 34445566666799999999999998887766542 2223457889999999999999999988877776654
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.35 Score=48.30 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhh-ccchhHHHHHHHHHHHHHHh
Q psy8366 423 VRGIASGITAASSSVVNFISTKTYINLTS-WFGLHGTLFIYTLVSFLGFI 471 (513)
Q Consensus 423 ~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~ 471 (513)
..+...|-......+|+++|+.+.+.+.- ..|.....++.+.+.++.++
T Consensus 142 ~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 142 HLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred chhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 35677888888999999999998887554 67766565565555554443
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.0066 Score=56.23 Aligned_cols=109 Identities=11% Similarity=0.077 Sum_probs=2.5
Q ss_pred HHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcC--------CCchhhHHHHHHHHHHHhccc
Q psy8366 336 VLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQ--------WPGWIPLTIFCTCFWVSGYGM 407 (513)
Q Consensus 336 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 407 (513)
....+.++..+|+.+.++..-+..+++.+.+..+.=.+...++..+...+. .+.+..++...+++... +-.
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TN-Gyl 265 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTN-GYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHcc-chh
Confidence 456788999999998887432211333333332222222222222211100 12334444443443333 334
Q ss_pred cchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8366 408 LPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKT 445 (513)
Q Consensus 408 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 445 (513)
.+....+..+..++++|..+..+....-.+|-.+|..+
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp -HHHH---------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666788888888888888888777777777776654
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG2601|consensus | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.53 Score=43.51 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=29.5
Q ss_pred chhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8366 409 PLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKT 445 (513)
Q Consensus 409 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 445 (513)
....-..+|..|.++|+.+.|+.|...+.-..+--.+
T Consensus 405 lAVtqimQe~VpEseR~vv~gvqnsL~~~ldll~~il 441 (503)
T KOG2601|consen 405 LAVTQIMQETVPESERCVVFGVQNSLNSALDLLKDIL 441 (503)
T ss_pred HHHHHHHHHhcchhhhhhhHhHHHHHHHHHHHHHHhE
Confidence 3444578899999999999999999998877665543
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=94.38 E-value=1.8 Score=41.07 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=9.3
Q ss_pred hhhhhccccchhhhhHHHH
Q psy8366 411 PWMLLSEVFPLQVRGIASG 429 (513)
Q Consensus 411 ~~~~~~~~~p~~~~~~~~g 429 (513)
.+...++ +|++.....++
T Consensus 138 ~~G~a~~-~P~~ytqavm~ 155 (406)
T KOG1479|consen 138 LYGLAGL-FPSEYTQAVMS 155 (406)
T ss_pred hhhhhhc-CCHHHHHHHHh
Confidence 3344444 47676554443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.02 E-value=2.8 Score=40.65 Aligned_cols=110 Identities=10% Similarity=0.087 Sum_probs=73.7
Q ss_pred HHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHh-----cC-----------CC-----------chhhHHH
Q psy8366 343 LSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMN-----LQ-----------WP-----------GWIPLTI 395 (513)
Q Consensus 343 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----------~~-----------~~~~~~~ 395 (513)
+.++..++..++.+++.+.+............++++++..+. +. .+ .|...+.
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 566777888899999999888766655555555555554431 00 01 1322222
Q ss_pred HHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy8366 396 FCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSW 452 (513)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 452 (513)
....-.-......-..+..++|....++..+-+++.+...+++..++..+..++..+
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 222222222233346678999999999999999999999999999999888887764
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=92.38 E-value=3.5 Score=41.75 Aligned_cols=147 Identities=12% Similarity=-0.000 Sum_probs=89.0
Q ss_pred HhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcc-cCCchHHHHhhHHHHHHHHHHHHHHHhcC----------C-----
Q psy8366 325 RTFGLPMKS-EWVLVLTGILSITGSFVSTITVNK-LGKRGMTLWSTGINTFFTLMLSICAMNLQ----------W----- 387 (513)
Q Consensus 325 ~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~----- 387 (513)
...+.+... .-.............+++++++|. +||-+++.++..+..++..++........ .
T Consensus 66 ~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~ 145 (571)
T KOG1237|consen 66 LELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCE 145 (571)
T ss_pred HHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCccc
Confidence 455555433 445555566667777889999996 57888888888888777666655443210 0
Q ss_pred --Cchhh-HHHHH-HHHHHHhccccchhhhhhccccc---h-hhhh--HHHHHHHHHHHHHHHHHHHHhhhhhhccchhH
Q psy8366 388 --PGWIP-LTIFC-TCFWVSGYGMLPLPWMLLSEVFP---L-QVRG--IASGITAASSSVVNFISTKTYINLTSWFGLHG 457 (513)
Q Consensus 388 --~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~p---~-~~~~--~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 457 (513)
..... ++... -....+..+.-+...+.-.|-++ + +.+. .-+.......+.|..++..+..+.-+..||..
T Consensus 146 ~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~l 225 (571)
T KOG1237|consen 146 SPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKL 225 (571)
T ss_pred CcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhccccee
Confidence 00111 11111 11122333445666677777776 2 2223 55666677778888888888888878888877
Q ss_pred HHHHHHHHHHHHHh
Q psy8366 458 TLFIYTLVSFLGFI 471 (513)
Q Consensus 458 ~~~~~~~~~~~~~~ 471 (513)
.|.+..++..++.+
T Consensus 226 gf~i~~~~~~lai~ 239 (571)
T KOG1237|consen 226 GFGIPTVLNALAIL 239 (571)
T ss_pred eccHHHHHHHHHHH
Confidence 77666665555444
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.15 Score=44.63 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=34.0
Q ss_pred hhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHH
Q psy8366 318 PFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGIN 371 (513)
Q Consensus 318 ~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 371 (513)
.|.-++++.+|+...+ +.+........++...+.|.+.||.|||+..+.-.+..
T Consensus 58 PYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitY 112 (454)
T KOG4332|consen 58 PYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITY 112 (454)
T ss_pred ceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHH
Confidence 4444444677777665 55544444445566677789999999998765433333
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=91.83 E-value=1.5 Score=42.85 Aligned_cols=107 Identities=13% Similarity=0.111 Sum_probs=73.1
Q ss_pred HHHHHHHhhhhhhhHHHHHHhhhhcchh--hHHH--HHhHHHHHHHHHHHhc---------hhHHHHHHHHHHhhccccc
Q psy8366 85 SWLGSILFLFHPFGSIISGYFLEYIGRK--RLMI--LVGFPFFLGWILLYLA---------ETVSIIMLGTVCMGLSVGC 151 (513)
Q Consensus 85 ~~~~s~~~l~~~i~~~~~g~l~dr~Grr--~~~~--~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~g~~~ 151 (513)
-....++.+|-.+|..+..+. ..-++| ++++ +.=+++.--.++|..- ++-+..++.-++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~-~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKF-MWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhhee-EeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 455666777777777654432 111223 3322 2223344444455322 4666777889999999999
Q ss_pred cccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhh
Q psy8366 152 CEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYA 192 (513)
Q Consensus 152 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~ 192 (513)
....+..+..+..++++|..+..+...+..+|..+|..++.
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888888877643
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=87.94 E-value=8 Score=37.84 Aligned_cols=61 Identities=8% Similarity=0.104 Sum_probs=29.6
Q ss_pred hhHHHHHHh--cCCCchh-HH---HHHHHHHHHHHhhhHHHHhhcccCCchHHHHhh-HHHHHHHHHH
Q psy8366 318 PFLVEIFRT--FGLPMKS-EW---VLVLTGILSITGSFVSTITVNKLGKRGMTLWST-GINTFFTLML 378 (513)
Q Consensus 318 ~~~~~~~~~--~g~~~~~-~~---~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~-~~~~~~~~~~ 378 (513)
--.|.++++ .+.+-.+ +. ..-++.+=-+=+.++=...++|+||||..++.. .+.++.++.+
T Consensus 21 gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l 88 (544)
T PF13000_consen 21 GSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYL 88 (544)
T ss_pred ccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHH
Confidence 355666665 4444333 22 222233322333334455667899999876643 3333333333
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=84.51 E-value=0.29 Score=45.38 Aligned_cols=107 Identities=18% Similarity=0.176 Sum_probs=3.8
Q ss_pred HHHHHHhhhhhhhHHHHHHhhhh-cchhhHHHH--HhHHHHHHHHHHH----------hchhHHHHHHHHHHhhcccccc
Q psy8366 86 WLGSILFLFHPFGSIISGYFLEY-IGRKRLMIL--VGFPFFLGWILLY----------LAETVSIIMLGTVCMGLSVGCC 152 (513)
Q Consensus 86 ~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~--~~~~~~~~~~~~~----------~~~~~~~l~~~r~l~G~g~~~~ 152 (513)
....+|.++-.+|....++.-=+ -.+|+.... .=+++.-..++|- +-+|-+..++.-++.|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 35667888888888877664211 134444332 2223332333331 2345567788899999999999
Q ss_pred ccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhh
Q psy8366 153 EAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYA 192 (513)
Q Consensus 153 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~ 192 (513)
......+..+..++++|..+..+...+..+|..+|..++.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~ 305 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF 305 (309)
T ss_dssp -HHHH-----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888888888888876653
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=83.85 E-value=16 Score=34.45 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=35.8
Q ss_pred HHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhc-----ccCCchHHHH-hhHHHHHHHHHHH
Q psy8366 307 ITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVN-----KLGKRGMTLW-STGINTFFTLMLS 379 (513)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d-----~~g~~~~~~~-~~~~~~~~~~~~~ 379 (513)
..+..-..... -.|.+++..|.|-.. +....... -.---++...+.| |+||||..++ +..+.+..+..+.
T Consensus 41 llQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs 117 (510)
T KOG3574|consen 41 LLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLS 117 (510)
T ss_pred HHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHh
Confidence 33433333333 788888866665543 32222111 0111345555666 9999987654 4444444444444
Q ss_pred H
Q psy8366 380 I 380 (513)
Q Consensus 380 ~ 380 (513)
.
T Consensus 118 ~ 118 (510)
T KOG3574|consen 118 Y 118 (510)
T ss_pred h
Confidence 3
|
|
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=82.39 E-value=4.3 Score=36.80 Aligned_cols=117 Identities=19% Similarity=0.181 Sum_probs=82.8
Q ss_pred Ccccch-hhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhH---HHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccc
Q psy8366 76 DLILSD-EQSSWLGSILFLFHPFGSIISGYFLEYIGRKRL---MILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGC 151 (513)
Q Consensus 76 ~~~~s~-~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~ 151 (513)
.+..+. .|.-|....|.+|-.+..--.-..--+ .-+. +-.-.+++.+...+..+.++++..++.-+.-|+-.|.
T Consensus 281 g~sls~~sqYRwyqvlYQlGVFiSRSS~~~~~~p--~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGa 358 (409)
T KOG3880|consen 281 GFSLSKDSQYRWYQVLYQLGVFISRSSINLFTMP--YLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGA 358 (409)
T ss_pred CCccchhhcchhhheeeeeeEEEEeccceEEech--HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCch
Confidence 444443 357899999988876643322111111 1111 2223334445555566789999999999999998898
Q ss_pred cccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH
Q psy8366 152 CEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT 194 (513)
Q Consensus 152 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~ 194 (513)
.++...--+.+-.++++|-.+++....+-++|..++++++-.+
T Consensus 359 sYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 359 SYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 8888888888888899999999999999999999998887544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 513 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 4e-18 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 513 | |||
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 3e-06 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 3e-05 |
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 3e-06
Identities = 15/123 (12%), Positives = 38/123 (30%), Gaps = 5/123 (4%)
Query: 100 IISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISY 159
+ + IG K ++L G + I A + +++ V Y
Sbjct: 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336
Query: 160 IGEISEPRMRGSL-SLFAGAACNFGVFIIFLI----YALTDWRTTVLISAIFPILTMIMI 214
I E R ++ + + + ++ Y ++ L+ + + ++
Sbjct: 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLIS 396
Query: 215 AFI 217
F
Sbjct: 397 VFT 399
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 3e-05
Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 11/154 (7%)
Query: 42 FLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSII 101
LL SL + + + +L + L++ Q+ + S + + I
Sbjct: 29 ALLCSLFFLWAVANNLNDILLPQFQQ--------AFTLTNFQAGLIQSAFYFGYFIIPIP 80
Query: 102 SGYFLEYIGRKRLMILVGFPFFLGWILLYLA---ETVSIIMLGTVCMGLSVGCCEAPIIS 158
+G ++ + K +I F + LG L + A ++ ++G + +GC E
Sbjct: 81 AGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANP 140
Query: 159 YIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYA 192
++ + A +FG I +
Sbjct: 141 FVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 513 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.98 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.96 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.95 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.49 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.44 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.43 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.36 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.33 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.28 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.25 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=374.30 Aligned_cols=439 Identities=21% Similarity=0.338 Sum_probs=337.8
Q ss_pred HHHHHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcch
Q psy8366 32 SQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGR 111 (513)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Gr 111 (513)
..+...++++++.+..|++.+..+..+|.+........+ .+.+.+..+.|++.+++.+|..+|++++|+++||+||
T Consensus 9 y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GR 84 (491)
T 4gc0_A 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQN----LSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGR 84 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGC----CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445556666778888999999999999988743211111 2234556788999999999999999999999999999
Q ss_pred hhHHHHHhHHHHHHHHHHH------------------hchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhh
Q psy8366 112 KRLMILVGFPFFLGWILLY------------------LAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLS 173 (513)
Q Consensus 112 r~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~ 173 (513)
|++++++.+++.+++++++ +++|+++++++|+++|+|.|+..+....+++|+.|+++|++..
T Consensus 85 k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~ 164 (491)
T 4gc0_A 85 RDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV 164 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence 9999999999999999998 4789999999999999999999999999999999999999999
Q ss_pred hHhhHHHHHHHHHHHHHhhhH------------hHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhh
Q psy8366 174 LFAGAACNFGVFIIFLIYALT------------DWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVR 241 (513)
Q Consensus 174 ~~~~~~~~lG~~~~~~l~~~~------------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~ 241 (513)
++.+.+..+|.++++.++... .||+.+.+..++.++..+..+++||||+|+..+++.+++.+.+++..
T Consensus 165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~ 244 (491)
T 4gc0_A 165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIM 244 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhc
Confidence 999999999999888776432 79999999999988888888999999999999999999988877654
Q ss_pred CCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHH
Q psy8366 242 GWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLV 321 (513)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (513)
+.+...+...+..+... +++ + ... ....++ .++.........+....+.+.+..|.+
T Consensus 245 ~~~~~~~~~~~~~~~~~---------------~~~-~---~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (491)
T 4gc0_A 245 GNTLATQAVQEIKHSLD---------------HGR-K---TGG-RLLMFG---VGVIVIGVMLSIFQQFVGINVVLYYAP 301 (491)
T ss_dssp HHHHHHHHHHHHHHHHH---------------HHH-H---HTT-HHHHSC---CTHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHH---------------hhh-h---hhh-HHHHhc---ccHHHHHHHHHHHHHHhhhhHHHhcch
Confidence 32211111111110000 000 0 000 111111 234455555566666777788888888
Q ss_pred HHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHH
Q psy8366 322 EIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCF 400 (513)
Q Consensus 322 ~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (513)
.+.+..+.+... .....+.++..+++.++++++.||+|||+.+..+.....++.+.+...... ....+..+....+..
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~ 380 (491)
T 4gc0_A 302 EVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-QAPGIVALLSMLFYV 380 (491)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHH
Confidence 888887776665 566677889999999999999999999999998888888877766654422 223344444445555
Q ss_pred HHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhc------cchhHHHHHHHHHHHHHHhhee
Q psy8366 401 WVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSW------FGLHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~------~g~~~~~~~~~~~~~~~~~~~~ 474 (513)
.++..+..++.+.+.+|++|++.|+++.|+.+.++++++++++.+.+.+.+. .+....+++++++++++.++.+
T Consensus 381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 460 (491)
T 4gc0_A 381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460 (491)
T ss_dssp HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5556677788889999999999999999999999999999999888776543 3455678889999999988888
Q ss_pred EEcccCCCCCHHHHHHHHhccccc
Q psy8366 475 FYVPETEDRTLQEILDFFAENKSA 498 (513)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~ 498 (513)
++.||+|+|++||+|+.+++++++
T Consensus 461 ~~~PETkg~tLeei~~~f~~~~~~ 484 (491)
T 4gc0_A 461 KFVPETKGKTLEELEALWEPETKK 484 (491)
T ss_dssp HHCCCCTTCCHHHHGGGTC-----
T ss_pred heecCCCCCCHHHHHHHhCCCCcc
Confidence 899999999999998877655443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=317.02 Aligned_cols=388 Identities=13% Similarity=0.133 Sum_probs=285.5
Q ss_pred HHHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhh
Q psy8366 34 FTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKR 113 (513)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~ 113 (513)
+......++..+..+++.....+.+|.+. +++ .+..+.|++.+++.++..++++++|+++||+|||+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~ 93 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLV------------EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV 93 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT------------SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH
Confidence 33444445566667777888889999999 888 99999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHh----chhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHH
Q psy8366 114 LMILVGFPFFLGWILLYL----AETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFL 189 (513)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~ 189 (513)
+++++.++.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.++++.
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 173 (451)
T 1pw4_A 94 FLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPL 173 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999998888
Q ss_pred HhhhH----h-HHHHHHhhhHHHHHHHH-HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccc
Q psy8366 190 IYALT----D-WRTTVLISAIFPILTMI-MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSA 263 (513)
Q Consensus 190 l~~~~----~-wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (513)
++..+ + ||+.|++.+++.++..+ ..+++||+|+....+.+.+.. ++ . ..+.
T Consensus 174 ~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~-~~~~---------- 230 (451)
T 1pw4_A 174 LFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK-----------ND-Y-PDDY---------- 230 (451)
T ss_dssp HHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC-----------CC-----------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc-----------cc-c-cccc----------
Confidence 87653 7 99999999988877666 456788887642211111000 00 0 0000
Q ss_pred cccccccccchhhcchhhhhh-hhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh-cCCCchh-HHHHHHH
Q psy8366 264 TLYVADSEYTTDQRKSSQLSK-LLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT-FGLPMKS-EWVLVLT 340 (513)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~ 340 (513)
.+.++++.+ ..+ ..+..++++..+ ...+..+...........+.|.++++ .|++... +....+.
T Consensus 231 ------~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 297 (451)
T 1pw4_A 231 ------NEKAEQELT---AKQIFMQYVLPNKLLW----YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 297 (451)
T ss_dssp --------------C---CTHHHHHHTSSCHHHH----HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHH
T ss_pred ------hhhhhcccc---cccchHHHHHcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 000000000 011 022333332222 22222222333345566788888876 7888776 7888889
Q ss_pred HHHHHHhhhHHHHhhccc--CCchHHHHhhHHHH-HHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhcc
Q psy8366 341 GILSITGSFVSTITVNKL--GKRGMTLWSTGINT-FFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSE 417 (513)
Q Consensus 341 ~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (513)
.++.+++.++.+++.||+ ++|+.+..+..+.. ++.+++... ...+.+.......+.+.+. .+..+....+..|
T Consensus 298 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~ 373 (451)
T 1pw4_A 298 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN---PAGNPTVDMICMIVIGFLI-YGPVMLIGLHALE 373 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC---CTTCHHHHHHHHHHHHHHH-THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh---cccCHHHHHHHHHHHHHHH-hchHHHHHHHHHH
Confidence 999999999999999999 99988877666555 443333221 1112333333333333322 3445566689999
Q ss_pred ccchhhhhHHHHHHHHHHHH-HHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhhee
Q psy8366 418 VFPLQVRGIASGITAASSSV-VNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 418 ~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 474 (513)
.+|++.|+++.|+.+...++ |..++|.+.|.+.+..|+...+++.+++.+++.++.+
T Consensus 374 ~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 374 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 9999999999999999999999888888877766544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=296.68 Aligned_cols=359 Identities=15% Similarity=0.137 Sum_probs=273.8
Q ss_pred HHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHH
Q psy8366 39 AQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILV 118 (513)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~ 118 (513)
..++..+..+++.....+.+|.+. +++|+++.+.|++.+++.+++.++++++|+++||+|||++++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~ 97 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDILLPQFQ------------QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITG 97 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------------HHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH------------HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHH
Confidence 334455666677778889999998 89999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH---HhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhHh
Q psy8366 119 GFPFFLGWILL---YLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTD 195 (513)
Q Consensus 119 ~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~ 195 (513)
.++.+++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|..+++.++..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 98 LFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 889999999999999999999999999999999999999999999999999999999999877653
Q ss_pred ------------------------------HHHHHHhhhHHHHHHHHHHHh--ccCchhhhhhcCChHHHHHHHHHhhCC
Q psy8366 196 ------------------------------WRTTVLISAIFPILTMIMIAF--IPESPTWLVSKGRLEEAERSLRWVRGW 243 (513)
Q Consensus 196 ------------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~ 243 (513)
||+.|++.+++.++..+..++ .||+++. ++++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~------------- 241 (438)
T 3o7q_A 178 LSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHSD------------- 241 (438)
T ss_dssp HTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCCC-------------
T ss_pred hcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cccc-------------
Confidence 999998888777766654444 3554321 0000
Q ss_pred CchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHH
Q psy8366 244 SKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEI 323 (513)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (513)
+++ .+...+ ++.+++++..+...+...+... .......+.|.+
T Consensus 242 -----------------------------~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 284 (438)
T 3o7q_A 242 -----------------------------AKQ---GSFSAS-LSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRY 284 (438)
T ss_dssp -----------------------------SST---TSHHHH-HHHHTTCSHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred -----------------------------ccc---cchhhh-HHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 000 000111 3444444433333333222222 234455777877
Q ss_pred -HHh-cCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHH
Q psy8366 324 -FRT-FGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCF 400 (513)
Q Consensus 324 -~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (513)
+++ .|++... +....+..++.+++.++.+++.||++||+.+..+..+..++.+++.... .........+.+
T Consensus 285 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g 358 (438)
T 3o7q_A 285 AVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG------GHVGLIALTLCS 358 (438)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHH
T ss_pred hhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC------CcHHHHHHHHHH
Confidence 766 4888776 7888888999999999999999999999999888877777665554422 222333333333
Q ss_pred HHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHHHHHh
Q psy8366 401 WVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFG-LHGTLFIYTLVSFLGFI 471 (513)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 471 (513)
.+. ....+..+++..|.+|++ ++.+.++.. ...+|+.++|.+.|.+.+..| ++..+.+.+++.++..+
T Consensus 359 ~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 359 AFM-SIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHH-TTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 333 445677778888998866 888888877 677999999999999999999 88888876655554444
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-32 Score=268.74 Aligned_cols=391 Identities=13% Similarity=0.100 Sum_probs=248.4
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhh-cchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEY-IGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCE 153 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~ 153 (513)
+|+|++..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+++.+++++++|++.++++|+++|++.+...
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 5699999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred cchhhhhhccCCccc--cchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHHHHHHhc-cCch----h
Q psy8366 154 APIISYIGEISEPRM--RGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLISAIFPILTMIMIAFI-PESP----T 222 (513)
Q Consensus 154 ~~~~~~~~~~~~~~~--r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~-~e~p----~ 222 (513)
+...++++|++|+++ |+.+.++++.+.++|..+++.++..+ +||+.|++.++..++..+..++. ++.. +
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL 206 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 999999999999988 77788888888899888888877664 89999999887777666544332 2211 0
Q ss_pred hhhhcCChHHHHHHHHH----------------hhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhh
Q psy8366 223 WLVSKGRLEEAERSLRW----------------VRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLL 286 (513)
Q Consensus 223 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (513)
....+.+.++.++..+. ..+..+.++. ............... . ....+++. .
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~-~~~~~~~~---------~ 274 (491)
T 4aps_A 207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAY-INLLTIVAIAIPVFY-F-AWMISSVK---------V 274 (491)
T ss_dssp CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHH-HHHHHHHHHHHHHHH-H-HHHC--------------
T ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccc-hhhhhHHHHHHHHHH-H-HHHhhccc---------c
Confidence 00111122232322222 0111110000 000000000000000 0 00000000 0
Q ss_pred hhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh-cCCCch-hHHHHHHHHHHHHHhhhHHHHhhcccCCchHH
Q psy8366 287 NYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT-FGLPMK-SEWVLVLTGILSITGSFVSTITVNKLGKRGMT 364 (513)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 364 (513)
....+++... ... .................+.+.+.++ .+.+.. .+.......++.+++.++.+++.||++||+..
T Consensus 275 ~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~ 352 (491)
T 4aps_A 275 TSTEHLRVVS-YIP-LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS 352 (491)
T ss_dssp -------CTT-HHH-HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred cHHHHHHHHH-HHH-HHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC
Confidence 0000111111 111 1111112222233444566666654 555533 36777788888899999999999999998655
Q ss_pred H-----HhhHHHHHHHHHHHHHHHhc----CCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHH
Q psy8366 365 L-----WSTGINTFFTLMLSICAMNL----QWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASS 435 (513)
Q Consensus 365 ~-----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 435 (513)
. .+..+.+++.+++....... +.+.+.......+.+.+. ....+..+.++.|.+|++.|+++.|+.+...
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 431 (491)
T 4aps_A 353 SPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGE-MLISPVGLSVTTKLAPKAFNSQMMSMWFLSS 431 (491)
T ss_dssp CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHH-HTTTTHHHHHHHHHTTTTCSSSSTHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4 56666666655554432111 112233333333333333 3446777889999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeEEcccCC
Q psy8366 436 SVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETE 481 (513)
Q Consensus 436 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (513)
++|..++|.+.+.+.+. ++...+.+.+++++++.++.++..++.+
T Consensus 432 ~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 432 SVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888764 6667777777777776665554444443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.8e-33 Score=266.87 Aligned_cols=347 Identities=13% Similarity=0.121 Sum_probs=252.4
Q ss_pred HHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhH
Q psy8366 41 NFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGF 120 (513)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~ 120 (513)
+...+..++......+.+|.+. +++|.++.+.+++.+++.++..++++++|+++||+|||+++.++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~------------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 73 (375)
T 2gfp_A 6 VLLVAVGQMAQTIYIPAIADMA------------RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMS 73 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHH------------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 3444555566777778899998 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----hH
Q psy8366 121 PFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----DW 196 (513)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~w 196 (513)
+.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+ +|
T Consensus 74 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 153 (375)
T 2gfp_A 74 IFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW 153 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988887654 99
Q ss_pred HHHHHhhhHHHHHHHH-HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchh
Q psy8366 197 RTTVLISAIFPILTMI-MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTD 275 (513)
Q Consensus 197 r~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (513)
|+.|++.+++.++..+ ..+++||+++...+++ +.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------~~ 188 (375)
T 2gfp_A 154 RACYLFLLVLCAGVTFSMARWMPETRPVDAPRT---------------------------------------------RL 188 (375)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC---------------------------------------------CT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc---------------------------------------------cH
Confidence 9999999888877766 4556788754210000 00
Q ss_pred hcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh-cCCCchh-HHHHHHHHHHHHHhhhHHHH
Q psy8366 276 QRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT-FGLPMKS-EWVLVLTGILSITGSFVSTI 353 (513)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~ 353 (513)
..+ ++..++++..+...+...+ ..........+.|.++++ .|.+... +.......++.+++.++.++
T Consensus 189 ------~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 257 (375)
T 2gfp_A 189 ------LTS-YKTLFGNSGFNCYLLMLIG----GLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGR 257 (375)
T ss_dssp ------TTC-STHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred ------HHH-HHHHhcCcchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 1222222222222222222 222233344555555544 6666555 78888888999999999999
Q ss_pred hhcccCCchHHHHhhHH-HHHHHH--HHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHH
Q psy8366 354 TVNKLGKRGMTLWSTGI-NTFFTL--MLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGI 430 (513)
Q Consensus 354 l~d~~g~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 430 (513)
+.||.+++ ...+... ...+.. ...... ..+.+.......+.+.+. ....+...++..|..| ++|+++.|+
T Consensus 258 l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~p-~~~g~~~g~ 330 (375)
T 2gfp_A 258 PNKRFSTL--MWQSVICCLLAGLLMWIPDWFG---VMNVWTLLVPAALFFFGA-GMLFPLATSGAMEPFP-FLAGTAGAL 330 (375)
T ss_dssp TTTHHHHH--HHHHHHHHHHTSSSSSHHHHHH---HHHHHHHHHHHHHHHHHH-HHTSSTTHHHHHTHHH-HHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc---cccHHHHHHHHHHHHHHH-HHhhHHHHHHHHHhCC-cccchHHHH
Confidence 99998872 2222222 222221 111111 012232223333333333 3446777789999998 899999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccchhHHHHHH
Q psy8366 431 TAASSSVVNFISTKTYINLTSWFGLHGTLFIY 462 (513)
Q Consensus 431 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 462 (513)
.+...++|..++|.+.|.+.+..++...+.+.
T Consensus 331 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 331 VGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 99999999999999999998877776655553
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-30 Score=250.08 Aligned_cols=354 Identities=11% Similarity=0.112 Sum_probs=217.0
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHH---HHHHhchhHH-HHHHHHHHhhcccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGW---ILLYLAETVS-IIMLGTVCMGLSVG 150 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~---~~~~~~~~~~-~l~~~r~l~G~g~~ 150 (513)
+++|+|..+.|++.+++.++..++++++|+++||+|||++++++..+++++. ..+.+++... .++.++++.|++.+
T Consensus 36 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 115 (417)
T 2cfq_A 36 DINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLG 115 (417)
T ss_dssp TTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTT
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999998888775532 2223333221 24556777777766
Q ss_pred ccccchhhhhhccCCc--cccchhhhHhhHHHHHHHHHHHHHhhhH---hHHHHHHhhhHHHHHHHHHHHhccCchhhhh
Q psy8366 151 CCEAPIISYIGEISEP--RMRGSLSLFAGAACNFGVFIIFLIYALT---DWRTTVLISAIFPILTMIMIAFIPESPTWLV 225 (513)
Q Consensus 151 ~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~ 225 (513)
...+.....+.++.++ ++|+...+....+..+|..+++.++..+ +||+.|++.+++.++..+..++.+|+|+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-- 193 (417)
T 2cfq_A 116 FCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPS-- 193 (417)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCCSC--
T ss_pred HHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCccccc--
Confidence 5555555555555543 3556666666555566666666665443 79999998877765555544444443210
Q ss_pred hcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHH
Q psy8366 226 SKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILF 305 (513)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (513)
+.+.++. . +.++++ .+..+ ...+++++..+...+.....
T Consensus 194 -~~~~~~~-----------------------------------~-~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~ 232 (417)
T 2cfq_A 194 -SATVANA-----------------------------------V-GANHSA---FSLKL-ALELFRQPKLWFLSLYVIGV 232 (417)
T ss_dssp -SSCSSSS-----------------------------------S-SSCCCC---CCHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -ccccccc-----------------------------------c-cccccc---ccHHH-HHHHhcCCchhhHHHHHHHH
Confidence 0000000 0 000000 00111 22233332222222211111
Q ss_pred HHHHhhchhchhhhHHHHHHh-cCC---Cchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHH
Q psy8366 306 FITIIASLQPMRPFLVEIFRT-FGL---PMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSI 380 (513)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~-~g~---~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 380 (513)
.. .+.....+.|.++.+ .+. +... +....+..++.+++.++.++++||+|||+.+..+..+.+++.+.+..
T Consensus 233 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~ 308 (417)
T 2cfq_A 233 SC----TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp HH----HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HH----HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 11 122222345555543 221 1222 55666777888899999999999999999888777766665444322
Q ss_pred HHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHH-HHHHHHHHHHHHHHhhhhhhccchhHHH
Q psy8366 381 CAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGIT-AASSSVVNFISTKTYINLTSWFGLHGTL 459 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 459 (513)
. .+.+...+...+..... ....+..+.+..|.+|++.|+++.++. +....+|++++|.+.|.+.+..|+...|
T Consensus 309 ~-----~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f 382 (417)
T 2cfq_A 309 A-----TSALEVVILKTLHMFEV-PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAY 382 (417)
T ss_dssp C-----CSHHHHHHHTTHHHHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHH
T ss_pred h-----ccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHH
Confidence 1 12222222222222221 122344567999999999999999994 8888999999999999999988888888
Q ss_pred HHHHHHHHHHHhheeEEcccCC
Q psy8366 460 FIYTLVSFLGFIYIYFYVPETE 481 (513)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~ 481 (513)
.+.+++++++.++.+...++++
T Consensus 383 ~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 383 LVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHHHHHHHHHHhhhcCCC
Confidence 8888888877765554444433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=238.54 Aligned_cols=408 Identities=10% Similarity=0.061 Sum_probs=224.7
Q ss_pred CCcc------cchhhHHHHHHHHhhhhhhhHHHHHHhhhhc-chhhHHHHHhHHHHHHHHHHHhch-hHHHHHHHHHHhh
Q psy8366 75 PDLI------LSDEQSSWLGSILFLFHPFGSIISGYFLEYI-GRKRLMILVGFPFFLGWILLYLAE-TVSIIMLGTVCMG 146 (513)
Q Consensus 75 ~~~~------~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G 146 (513)
+++| ++..+.+++.+++.++..++++++|+++||+ |||+++.++.++.+++.+++++++ +++.++++|+++|
T Consensus 41 ~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 120 (524)
T 2xut_A 41 TALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIA 120 (524)
T ss_dssp HSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 5677 9999999999999999999999999999999 999999999999999999999999 9999999999999
Q ss_pred ccccccccchhhhhhccCCccccchhhhH---hhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHHHHHHhcc-
Q psy8366 147 LSVGCCEAPIISYIGEISEPRMRGSLSLF---AGAACNFGVFIIFLIYALT----DWRTTVLISAIFPILTMIMIAFIP- 218 (513)
Q Consensus 147 ~g~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~~- 218 (513)
++.+...+...+++.|++|+++|+++.+. ...+.++|..+++.++..+ +||+.|++.+++.++..+..++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 121 LGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp HHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999877666 8888899999998887654 899999998888776666544332
Q ss_pred CchhhhhhcCChHHHHHHH-HHhhCCCchhhHHHHHHHHHHhhccccccccccc------------cchhhcchhhhhhh
Q psy8366 219 ESPTWLVSKGRLEEAERSL-RWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSE------------YTTDQRKSSQLSKL 285 (513)
Q Consensus 219 e~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 285 (513)
+.++...++.+..+..+.. ...+......+......+................ ...+++++.++...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (524)
T 2xut_A 201 RYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQL 280 (524)
T ss_dssp SCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHH
T ss_pred cccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHH
Confidence 2110000000000000000 0001000000000000000000000000000000 00000000011000
Q ss_pred h--hhhc---cCCchhHHH--HHHHHHHHHHhhchhchhhhHHHHHHhcCCCc--hhHHHHHHHHHHHHHhhhHHHHhh-
Q psy8366 286 L--NYLV---RPEIVRPFI--MIMILFFITIIASLQPMRPFLVEIFRTFGLPM--KSEWVLVLTGILSITGSFVSTITV- 355 (513)
Q Consensus 286 ~--~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~g~l~- 355 (513)
. +... ..+..++.. .............+.....+++.+....+.+. ..+.......++.+++.++.+++.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (524)
T 2xut_A 281 ERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLY 360 (524)
T ss_dssp HHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC--
T ss_pred hhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhH
Confidence 0 0000 001111111 11111111111112222233343333333322 234444444455555666665553
Q ss_pred ---cccCC----chHHHHhhHHHHHHHHHHHHHHHh----cCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhh
Q psy8366 356 ---NKLGK----RGMTLWSTGINTFFTLMLSICAMN----LQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVR 424 (513)
Q Consensus 356 ---d~~g~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 424 (513)
+|.++ ++.+..+..+.+++.+++...... ...+.+.......+.+. ......+..+++..|..|++.|
T Consensus 361 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~p~~~~ 439 (524)
T 2xut_A 361 PAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF-GEVLVSATGLEFAYSQAPKAMK 439 (524)
T ss_dssp ----------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH-HHHHHHHHHTTTHHHHCCTTCC
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHH
Confidence 44432 234455555555554444332100 01122222233333333 2234457777899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhccc--h---------hHHHHHHHHHHHHHHhheeEEcccCCCC
Q psy8366 425 GIASGITAASSSVVNFISTKTYINLTSWFG--L---------HGTLFIYTLVSFLGFIYIYFYVPETEDR 483 (513)
Q Consensus 425 ~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (513)
|+++|+.++..++|+.++|.+.+.+.+..+ | ...+++.+++++++.++.+++.++.+++
T Consensus 440 g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (524)
T 2xut_A 440 GTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQ 509 (524)
T ss_dssp TTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999887432 1 2236667777777666555555554433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=4e-14 Score=138.30 Aligned_cols=179 Identities=10% Similarity=0.105 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHH
Q psy8366 299 IMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLM 377 (513)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 377 (513)
+....+..+.............|.+.++. .+... ++..+...++..++.++.|+++||+|||+.+..+..+.+++.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 108 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLF 108 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 33333333333434555667778777777 77766 88999999999999999999999999999999999999888887
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccc-hh
Q psy8366 378 LSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFG-LH 456 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~ 456 (513)
+.+.... ..+.+..++...+.+.+. ....+...+++.|.+|+++|+.+.|+.+....+|..++|.+.+.+.+..| |+
T Consensus 109 ~~~~~~~-~~~~~~l~~~~~l~G~~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~ 186 (451)
T 1pw4_A 109 MGFVPWA-TSSIAVMFVLLFLCGWFQ-GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWH 186 (451)
T ss_dssp HHHCHHH-HSSSSHHHHHHHHHHHHH-HHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCST
T ss_pred HHhhhhc-cccHHHHHHHHHHHHHHh-hhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 7762100 013444444444444333 34567777899999999999999999999999999999999999889888 99
Q ss_pred HHHHHHHHHHHHHHhheeEEcccC
Q psy8366 457 GTLFIYTLVSFLGFIYIYFYVPET 480 (513)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~ 480 (513)
..|++.+++.++..++.++..+|.
T Consensus 187 ~~f~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T 1pw4_A 187 AALYMPAFCAILVALFAFAMMRDT 210 (451)
T ss_dssp TCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHhhccCC
Confidence 999998888777665554455544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.6e-13 Score=125.14 Aligned_cols=163 Identities=10% Similarity=0.006 Sum_probs=129.9
Q ss_pred hhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchh
Q psy8366 313 LQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWI 391 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
........|.+.++.|.+... ++..+...++..++.++.|+++||+|||+.+..+..+..++.+++.... +.+.
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~~ 90 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS-----SLTV 90 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH-----HHHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc-----cHHH
Confidence 444556677777788988877 8889999999999999999999999999999999999888887777654 3333
Q ss_pred hHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHh
Q psy8366 392 PLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFI 471 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 471 (513)
..+...+.+.+. ....+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..+.+.+++.++..+
T Consensus 91 l~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 91 LIAASAMQGMGT-GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 333333333333 3456677789999999999999999999999999999999999999988999999988888877766
Q ss_pred heeEEcccCC
Q psy8366 472 YIYFYVPETE 481 (513)
Q Consensus 472 ~~~~~~~~~~ 481 (513)
...+..||++
T Consensus 170 ~~~~~~~~~~ 179 (375)
T 2gfp_A 170 SMARWMPETR 179 (375)
T ss_dssp CCCCSSCCCS
T ss_pred HHHHHCcccC
Confidence 5555555543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.5e-13 Score=129.18 Aligned_cols=157 Identities=10% Similarity=-0.090 Sum_probs=122.0
Q ss_pred hhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchh
Q psy8366 313 LQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWI 391 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
........|.+.+++|.+..+ ++..+...++..++.++.|+++||+|||+.+..+..+.+++.++...... ..+.+.
T Consensus 42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~~~~~~ 119 (438)
T 3o7q_A 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--IMNYTL 119 (438)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHH
T ss_pred HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc--cccHHH
Confidence 456667788887889999887 89999999999999999999999999999999999999888877733221 113343
Q ss_pred hHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhh-hccc----------------
Q psy8366 392 PLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLT-SWFG---------------- 454 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~-~~~g---------------- 454 (513)
.++...+.+.+. ....+...+++.|.+|+++|+.+.++.+....+|..++|.+.+.+. +..+
T Consensus 120 l~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 198 (438)
T 3o7q_A 120 FLVGLFIIAAGL-GCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLS 198 (438)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHH
T ss_pred HHHHHHHHHhhH-HHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhh
Confidence 333334444333 3445677789999999999999999999999999999999999988 5544
Q ss_pred ---------hhHHHHHHHHHHHHHHhh
Q psy8366 455 ---------LHGTLFIYTLVSFLGFIY 472 (513)
Q Consensus 455 ---------~~~~~~~~~~~~~~~~~~ 472 (513)
|+..+++.+++.++..++
T Consensus 199 ~~~~~~~~~w~~~~~~~~~~~~~~~~~ 225 (438)
T 3o7q_A 199 AYKHSLVLSVQTPYMIIVAIVLLVALL 225 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 788887776666555443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.36 E-value=6e-12 Score=124.33 Aligned_cols=156 Identities=12% Similarity=0.136 Sum_probs=120.7
Q ss_pred hhchhhhHHHHHH-h-----cCCCchh-HHHHHHHHHHHHHhhhHHHHhhcc-cCCchHHHHhhHHHHHHHHHHHHHHHh
Q psy8366 313 LQPMRPFLVEIFR-T-----FGLPMKS-EWVLVLTGILSITGSFVSTITVNK-LGKRGMTLWSTGINTFFTLMLSICAMN 384 (513)
Q Consensus 313 ~~~~~~~~~~~~~-~-----~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (513)
++....+.+.+++ . +|.+... ++..+...++..++.++.|+++|| +|||+.+..+..+..++.+++....
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~-- 106 (491)
T 4aps_A 29 YYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPF-- 106 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhh--
Confidence 3444455666654 3 7888776 888999999999999999999999 8999999999888888877665432
Q ss_pred cCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhh--hhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHH
Q psy8366 385 LQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQV--RGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIY 462 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 462 (513)
+.+...+...+.+.+. ....+...+++.|.+|+++ |+.+.++.+...++|..++|.+.+.+.+..||+..|++.
T Consensus 107 ---~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~ 182 (491)
T 4aps_A 107 ---GASALFGSIILIIIGT-GFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLA 182 (491)
T ss_dssp ---STTHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHH-HhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3343333333333333 3456777789999999888 888888899999999999999999999999999999988
Q ss_pred HHHHHHHHhhee
Q psy8366 463 TLVSFLGFIYIY 474 (513)
Q Consensus 463 ~~~~~~~~~~~~ 474 (513)
++..+++.++..
T Consensus 183 ~~~~~~~~~~~~ 194 (491)
T 4aps_A 183 AIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777666655443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-11 Score=121.76 Aligned_cols=155 Identities=17% Similarity=0.097 Sum_probs=117.1
Q ss_pred hchhhhHHHHHH-hcC------CCchh-HHHHHHHHHHHHHhhhHHHHhhccc-CCchHHHHhhHHHHHHHHHHHHHHHh
Q psy8366 314 QPMRPFLVEIFR-TFG------LPMKS-EWVLVLTGILSITGSFVSTITVNKL-GKRGMTLWSTGINTFFTLMLSICAMN 384 (513)
Q Consensus 314 ~~~~~~~~~~~~-~~g------~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (513)
+....+++.++. +.| ++... ++......++..++.++.|+++||+ |||+.+..+..+..++.+++....
T Consensus 29 ~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~-- 106 (524)
T 2xut_A 29 YGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE-- 106 (524)
T ss_dssp HHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS--
T ss_pred HHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc--
Confidence 334456666654 577 77776 8888999999999999999999999 999999988888887776665421
Q ss_pred cCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHH---HHHHHHHHHHHHHHHhhhhhhccchhHHHHH
Q psy8366 385 LQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGI---TAASSSVVNFISTKTYINLTSWFGLHGTLFI 461 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 461 (513)
.+.+...+...+.+.+. ....+...+++.|.+|+++|+.+.+. .+...++|..++|.+.+.+.+..||+..|.+
T Consensus 107 --~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~ 183 (524)
T 2xut_A 107 --HSVQGFYTGLFLIALGS-GGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGI 183 (524)
T ss_dssp --SCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHH
T ss_pred --ccHHHHHHHHHHHHHhc-cccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 12333333333333333 34567777899999999999776666 8889999999999999999998899999988
Q ss_pred HHHHHHHHHhhe
Q psy8366 462 YTLVSFLGFIYI 473 (513)
Q Consensus 462 ~~~~~~~~~~~~ 473 (513)
.+++.+++.++.
T Consensus 184 ~~~~~~~~~~~~ 195 (524)
T 2xut_A 184 PGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887776665543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8.4e-12 Score=120.30 Aligned_cols=143 Identities=10% Similarity=0.083 Sum_probs=116.8
Q ss_pred cchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhh
Q psy8366 79 LSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIIS 158 (513)
Q Consensus 79 ~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~ 158 (513)
.+....+++.++..++..++.++.|++.||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888999999999999999999999999999998888888888888888888888888887767777788
Q ss_pred hhhccCCccccchhhhH-hhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHHHHH-HhccCch
Q psy8366 159 YIGEISEPRMRGSLSLF-AGAACNFGVFIIFLIYALT----DWRTTVLISAIFPILTMIMI-AFIPESP 221 (513)
Q Consensus 159 ~~~~~~~~~~r~~~~~~-~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~-~~~~e~p 221 (513)
++.|.+|++.|++..++ ++....+|..++|.+++.+ +++..|.+.+++.++..++. ++.||++
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999998888 4767777777777766543 78889988888887776653 4456654
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-11 Score=118.96 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=106.1
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhch-----hHHHHH-HHHHHhhcc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAE-----TVSIIM-LGTVCMGLS 148 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-----~~~~l~-~~r~l~G~g 148 (513)
++.+.+............+...++.++.+++.||+|||+.++.+....+++.+..+... +...+. +.-+..+++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (491)
T 4gc0_A 305 KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA 384 (491)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 55566777777777778888899999999999999999999999888887776654331 222222 222233333
Q ss_pred ccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----------hHHHHHHhhhHHHHHHHH-HHHhc
Q psy8366 149 VGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----------DWRTTVLISAIFPILTMI-MIAFI 217 (513)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----------~wr~~f~~~~~~~~~~~~-~~~~~ 217 (513)
. ...+....+.+|.+|.+.|+++.++......+|..+++.+...+ ++.+.|++.++++++..+ .++++
T Consensus 385 ~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~ 463 (491)
T 4gc0_A 385 M-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFV 463 (491)
T ss_dssp T-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred h-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhee
Confidence 2 34567778999999999999999999988888887776554322 455677888888877776 56779
Q ss_pred cCc
Q psy8366 218 PES 220 (513)
Q Consensus 218 ~e~ 220 (513)
|||
T Consensus 464 PET 466 (491)
T 4gc0_A 464 PET 466 (491)
T ss_dssp CCC
T ss_pred cCC
Confidence 998
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 513 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 4e-14 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 4e-07 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 72.0 bits (175), Expect = 4e-14
Identities = 51/418 (12%), Positives = 124/418 (29%), Gaps = 33/418 (7%)
Query: 76 DLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYL---- 131
+ S + S + + + F I G + + + + +
Sbjct: 53 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA 112
Query: 132 AETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIY 191
+++++ + G G P + + RG + A N G I L++
Sbjct: 113 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 172
Query: 192 ALTDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRV 251
L ++ + + L + + + +S K+
Sbjct: 173 LLG-------MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD 225
Query: 252 EFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIA 311
++ + +++ + + Y++ +++ + + ++
Sbjct: 226 DYNE------------------KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYG 267
Query: 312 SLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGIN 371
L +L E+ KS W L I G+ + +K+ +
Sbjct: 268 ILDWSPTYLKEVK--HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFM 325
Query: 372 TFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGIT 431
T T+ + MN + + YG + L + E+ P + G A+G T
Sbjct: 326 TLVTIATIVYWMNPAGNPTVDMICMI-VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFT 384
Query: 432 AASSSVVNFISTKTYIN-LTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEI 488
+ ++ + +FG G + S L I + + + R Q +
Sbjct: 385 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLL 442
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 50.2 bits (118), Expect = 4e-07
Identities = 35/418 (8%), Positives = 108/418 (25%), Gaps = 60/418 (14%)
Query: 79 LSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSII 138
+S + + + + LF + G + +G ++ ++ + + + ++ ++
Sbjct: 40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99
Query: 139 MLGTVCMGLSVGCCEAPIISYI----------GEISEPRMRGSLSLFAGAACNFGVFIIF 188
+ + G + G +F G I+
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG 159
Query: 189 LIYALTDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHK 248
+++ + + L S IL +++ ++P+ + +
Sbjct: 160 IMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLAL----- 214
Query: 249 VRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFIT 308
+P++ + ++ +
Sbjct: 215 --------------------------------------ELFRQPKLWFLSLYVIGVSCTY 236
Query: 309 IIASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWST 368
+ Q F +V + +L+ + F + + +N
Sbjct: 237 DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN------RIGGKN 290
Query: 369 GINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIAS 428
+ T+M + + + I T +L + ++ F ++
Sbjct: 291 ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIY 350
Query: 429 GITAA-SSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTL 485
+ + + N+ G G + LV+ + F + +L
Sbjct: 351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 513 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.49 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.47 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.4e-38 Score=308.23 Aligned_cols=395 Identities=13% Similarity=0.111 Sum_probs=272.9
Q ss_pred HHHHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchh
Q psy8366 33 QFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRK 112 (513)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr 112 (513)
+|.......+..+...++....+.+.|.+. |+|+|.+|.|++.+++.+++.++++++|+++||+|||
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-------------~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r 89 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-------------EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR 89 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-------------SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 344444444555555566666677788765 5799999999999999999999999999999999999
Q ss_pred hHHHHHhHHHHHHHHHHHhch----hHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHH
Q psy8366 113 RLMILVGFPFFLGWILLYLAE----TVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIF 188 (513)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~ 188 (513)
+++.++.++.+++.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~ 169 (447)
T d1pw4a_ 90 VFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPP 169 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhh
Confidence 999999999999999998774 7789999999999999999999999999999999999999999999999988887
Q ss_pred HHhhhH-----hHHHHHHhhhHHHHHHHHH-HHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhcc
Q psy8366 189 LIYALT-----DWRTTVLISAIFPILTMIM-IAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNS 262 (513)
Q Consensus 189 ~l~~~~-----~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (513)
.++... +||+.|++.+++.++..++ .++.+|+|+........+...+ ..++
T Consensus 170 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------- 226 (447)
T d1pw4a_ 170 LLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND-------------YPDD---------- 226 (447)
T ss_dssp HHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC---------------------------
T ss_pred hhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhh-------------cccc----------
Confidence 765543 8999999998888777664 5556666653221111110000 0000
Q ss_pred ccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHH-hcCCCchh-HHHHHHH
Q psy8366 263 ATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLPMKS-EWVLVLT 340 (513)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~ 340 (513)
..++.+++........+..++++.. +......+...........+.+.++. ..+.+... +....+.
T Consensus 227 --------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (447)
T d1pw4a_ 227 --------YNEKAEQELTAKQIFMQYVLPNKLL----WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 294 (447)
T ss_dssp -----------------CCTHHHHHHTSSCHHH----HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHH
T ss_pred --------hhhccccccchhhHHHHHHHcCchH----HHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcc
Confidence 0000000000011112333333222 22222222222334455667777775 46777766 7888888
Q ss_pred HHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccc
Q psy8366 341 GILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFP 420 (513)
Q Consensus 341 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 420 (513)
.++.+++.++.|++.||++|++..........+..............+.+...+...+.++ ...+..+....+..|.+|
T Consensus 295 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p 373 (447)
T d1pw4a_ 295 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF-LIYGPVMLIGLHALELAP 373 (447)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHH-HHTHHHHHHHHHHHHTSC
T ss_pred hhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999876555444444333333333221122233333333333333 323445666788999999
Q ss_pred hhhhhHHHHHHHHHHHHH-HHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeEE
Q psy8366 421 LQVRGIASGITAASSSVV-NFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFY 476 (513)
Q Consensus 421 ~~~~~~~~g~~~~~~~~g-~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 476 (513)
++.|+++.|+.+.+.+++ ..++|.+.|.+.|..|++..+++.+++++++.++...+
T Consensus 374 ~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 374 KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998875 56688999999999999988888887777776655443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=3.1e-29 Score=240.36 Aligned_cols=373 Identities=11% Similarity=0.096 Sum_probs=239.9
Q ss_pred cccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHH
Q psy8366 50 AFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILL 129 (513)
Q Consensus 50 ~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 129 (513)
..+...+.+|.... +++|+|++++|++.+++.++..++++++|+++||+|||++++++..+..++..+.
T Consensus 22 ~~~~~~~~l~~~l~-----------~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~ 90 (417)
T d1pv7a_ 22 IMGAYFPFFPIWLH-----------DINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPF 90 (417)
T ss_dssp HHHHHHHHHHHHHH-----------HHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHH-----------HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 34445577776431 6789999999999999999999999999999999999999999999999999888
Q ss_pred HhchhHHHH----HHHHHHhhccccccccchhhhhhccCCc--cccchhhhHhhHHHHHHHHHHHHHhhhH---hHHHHH
Q psy8366 130 YLAETVSII----MLGTVCMGLSVGCCEAPIISYIGEISEP--RMRGSLSLFAGAACNFGVFIIFLIYALT---DWRTTV 200 (513)
Q Consensus 130 ~~~~~~~~l----~~~r~l~G~g~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~wr~~f 200 (513)
.+..+.... ++.+.+.+.+.+...........+..++ +++.+..+........|..+++.++..+ +|+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 170 (417)
T d1pv7a_ 91 FIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVF 170 (417)
T ss_dssp HHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccc
Confidence 887765543 4556666666665555555544444432 3445566666666777777777666554 566666
Q ss_pred HhhhHHHHHHHH-HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcch
Q psy8366 201 LISAIFPILTMI-MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKS 279 (513)
Q Consensus 201 ~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (513)
........+..+ ..+..+|+|+. +.+.++.+ ++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----------------------------------------~~~~~ 207 (417)
T d1pv7a_ 171 WLGSGCALILAVLLFFAKTDAPSS---ATVANAVG----------------------------------------ANHSA 207 (417)
T ss_dssp HHHHHHHHHHHHHHHSSCCCSCSS---SCSSHHHH----------------------------------------SCCCC
T ss_pred cchhhHHHHHHHHHHHHhcccccc---hhhhhhhh----------------------------------------hhccc
Confidence 555555544444 55566776542 11111100 00000
Q ss_pred hhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHhcCC----Cchh-HHHHHHHHHHHHHhhhHHHHh
Q psy8366 280 SQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGL----PMKS-EWVLVLTGILSITGSFVSTIT 354 (513)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~-~~~~~~~~~~~~~~~~~~g~l 354 (513)
..... .....+.+..+............... .......+...... +... +.......++..++..+.+++
T Consensus 208 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 282 (417)
T d1pv7a_ 208 FSLKL-ALELFRQPKLWFLSLYVIGVSCTYDV----FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLI 282 (417)
T ss_dssp CCHHH-HHHHTTSSHHHHHHHHHHHHHHHHHH----HHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred ccccc-cccccccccccchhhhhHHHHHHHHh----hhccccccccccccccccchhhhcccccccccccccchhhhhhh
Confidence 00111 12222222222222222222221111 11222222222111 1122 455667778889999999999
Q ss_pred hcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHH-H
Q psy8366 355 VNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITA-A 433 (513)
Q Consensus 355 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~ 433 (513)
.||.++|+.+..+..+.+++.+.+.... +.+...+...+.+.+. ....+...+++.|.+|++.|+++.|+.. .
T Consensus 283 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (417)
T d1pv7a_ 283 INRIGGKNALLLAGTIMSVRIIGSSFAT-----SALEVVILKTLHMFEV-PFLLVGCFKYITSQFEVRFSATIYLVCFCF 356 (417)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHTCC-----CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSCGGGHHHHHHHHHTT
T ss_pred hcccccccchhhhHHHHHHhhhcccccc-----ccchhhHHHHHHHHHH-HHHHHHHHHHHHHHCCHhHHHHHHHHHHHH
Confidence 9999999999988888877766665432 4444444444444433 3445677789999999999999999864 5
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeEEcccCCCCCHHH
Q psy8366 434 SSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQE 487 (513)
Q Consensus 434 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (513)
...+|..++|.+.|.+.|..|++..+++.++++++..++..+..+++++.+..+
T Consensus 357 ~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 357 FKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence 667999999999999999999999999998888887777666666666555543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=4.4e-14 Score=133.58 Aligned_cols=145 Identities=10% Similarity=0.077 Sum_probs=124.8
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhcccccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEA 154 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~ 154 (513)
.+.+.+....+...+...++..++..+.+++.||+|||+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 331 (417)
T d1pv7a_ 252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLV 331 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 45566777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhccCCccccchhhhHh-hHHHHHHHHHHHHHhh----hHhHHHHHHhhhHHHHHHHHHH-HhccC
Q psy8366 155 PIISYIGEISEPRMRGSLSLFA-GAACNFGVFIIFLIYA----LTDWRTTVLISAIFPILTMIMI-AFIPE 219 (513)
Q Consensus 155 ~~~~~~~~~~~~~~r~~~~~~~-~~~~~lG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~-~~~~e 219 (513)
...+++.|.+|+++|++..++. +....+|..+++.+.+ ..||+..|++.+++.++..++. +.+++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999874 4556666666666544 4599999999988887776644 44443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=2.5e-14 Score=137.16 Aligned_cols=162 Identities=11% Similarity=0.126 Sum_probs=119.5
Q ss_pred chhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhH
Q psy8366 315 PMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPL 393 (513)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (513)
.+....|. +++.|++..+ ++..+...++..++.++.|+++||+|||+.+..+..+.+++.++......... +.+..+
T Consensus 43 ~~~~~~p~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 120 (447)
T d1pw4a_ 43 NFALAMPY-LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS-SIAVMF 120 (447)
T ss_dssp SHHHHHHH-TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS-SSSHHH
T ss_pred HHHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhh-hHHHHH
Confidence 33444453 4568888877 89999999999999999999999999999999999888888777665432111 233333
Q ss_pred HHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcc-chhHHHHHHHHHHHHHHhh
Q psy8366 394 TIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWF-GLHGTLFIYTLVSFLGFIY 472 (513)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~ 472 (513)
+...+.+.+. ....+....++.|.+|+++|+.+.|+.+....+|..++|.+.+.+.+.. +|+..+++.+.+.++..++
T Consensus 121 ~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 199 (447)
T d1pw4a_ 121 VLLFLCGWFQ-GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALF 199 (447)
T ss_dssp HHHHHHHHHH-HHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-hhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHH
Confidence 3333333333 3445666789999999999999999999999999999999888777654 6787777777777666555
Q ss_pred eeEEccc
Q psy8366 473 IYFYVPE 479 (513)
Q Consensus 473 ~~~~~~~ 479 (513)
.+...++
T Consensus 200 ~~~~~~~ 206 (447)
T d1pw4a_ 200 AFAMMRD 206 (447)
T ss_dssp HHHHCCC
T ss_pred HHHhccc
Confidence 5444443
|