Psyllid ID: psy8370
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 256 | 2.2.26 [Sep-21-2011] | |||||||
| Q6NWX7 | 223 | N-terminal Xaa-Pro-Lys N- | yes | N/A | 0.828 | 0.950 | 0.387 | 7e-41 | |
| Q9BV86 | 223 | N-terminal Xaa-Pro-Lys N- | yes | N/A | 0.820 | 0.941 | 0.4 | 3e-39 | |
| Q8R2U4 | 223 | N-terminal Xaa-Pro-Lys N- | yes | N/A | 0.820 | 0.941 | 0.390 | 3e-39 | |
| Q5BJX0 | 223 | N-terminal Xaa-Pro-Lys N- | yes | N/A | 0.820 | 0.941 | 0.386 | 4e-39 | |
| Q4KLE6 | 223 | N-terminal Xaa-Pro-Lys N- | N/A | N/A | 0.824 | 0.946 | 0.378 | 2e-38 | |
| Q2T9N3 | 223 | N-terminal Xaa-Pro-Lys N- | yes | N/A | 0.820 | 0.941 | 0.390 | 2e-38 | |
| Q6NN40 | 276 | Alpha N-terminal protein | yes | N/A | 0.808 | 0.75 | 0.385 | 3e-38 | |
| Q4KL94 | 224 | N-terminal Xaa-Pro-Lys N- | N/A | N/A | 0.824 | 0.941 | 0.376 | 7e-38 | |
| B1H2P7 | 224 | N-terminal Xaa-Pro-Lys N- | yes | N/A | 0.824 | 0.941 | 0.381 | 2e-37 | |
| P38340 | 232 | Alpha N-terminal protein | yes | N/A | 0.832 | 0.918 | 0.380 | 8e-36 |
| >sp|Q6NWX7|NTM1A_DANRE N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Danio rerio GN=ntmt1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 167 bits (423), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 133/217 (61%), Gaps = 5/217 (2%)
Query: 31 SHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGA 90
S YSE Y+ +VPPT+DGML GY SIS +DI S +FL + + G LD GA
Sbjct: 11 SFYSEAEHYWKDVPPTVDGMLGGYGSISSIDINGSKKFLQKFLGEGQGKTGTGCALDCGA 70
Query: 91 GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIK 150
GIGRI+K LL F +DL++ + +F+++A+ + ++ +++ + G+QDF+P+ +
Sbjct: 71 GIGRITKRLLLPLFRTVDLVDVTQEFLDKARTYLGEESKRVENYFCCGLQDFQPQPE--R 128
Query: 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA-SGVKNEYDDEDSSVVRS 209
YDVIWIQWV+ + D+ +++FL C+ L G+I++KDNVA GV DD DSSV R
Sbjct: 129 YDVIWIQWVIGHLTDDHLVEFLRRCRSGLRPEGLIVVKDNVAYEGVIP--DDVDSSVCRD 186
Query: 210 LPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
L L ++A L + E+ P+ +++++ AL+
Sbjct: 187 LNVLHRLVARAGLSIIYEEQQQNFPEEIYQVHALALR 223
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Danio rerio (taxid: 7955) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 4EC: 4 |
| >sp|Q9BV86|NTM1A_HUMAN N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Homo sapiens GN=NTMT1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 127/215 (59%), Gaps = 5/215 (2%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 92
YS+ Y+ +PPT+DGML GY IS +DI +S +FL + + G + LD GAGI
Sbjct: 13 YSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGI 72
Query: 93 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 152
GRI+K LL F ++D+++ + F+ QAK + ++ ++ + G+QDF PE + YD
Sbjct: 73 GRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDS--YD 130
Query: 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA-SGVKNEYDDEDSSVVRSLP 211
VIWIQWV+ + D+ + +FL CK L NGII+IKDN+A GV DD DSSV R L
Sbjct: 131 VIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI--LDDVDSSVCRDLD 188
Query: 212 QFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
+ A L + E+ +P ++ +Y FAL+
Sbjct: 189 VVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR 223
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q8R2U4|NTM1A_MOUSE N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Mus musculus GN=Ntmt1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 128/215 (59%), Gaps = 5/215 (2%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 92
YS+ Y+ +PPT+DGML GY IS++D+ +S +FL + + G + LD GAGI
Sbjct: 13 YSKAKTYWKQIPPTVDGMLGGYGHISNIDLNSSRKFLQRFLREGPNKTGTSCALDCGAGI 72
Query: 93 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 152
GRI+K LL F +D+++ + F+ +AK + ++ ++ + G+QDF PE + YD
Sbjct: 73 GRITKRLLLPLFRVVDMVDVTEDFLAKAKTYLGEEGKRVRNYFCCGLQDFSPEPGS--YD 130
Query: 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS-GVKNEYDDEDSSVVRSLP 211
VIWIQWV+ + D+ + +FL CK+ L NGII+IKDN+A GV DD DSSV R L
Sbjct: 131 VIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVI--LDDVDSSVCRDLE 188
Query: 212 QFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
+ A L + E+ +P ++ +Y FAL+
Sbjct: 189 VVRRIIRTAGLSLLAEERQENLPDEIYHVYSFALR 223
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1 (By similarity). Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q5BJX0|NTM1A_RAT N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Rattus norvegicus GN=Ntmt1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 161 bits (407), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 128/215 (59%), Gaps = 5/215 (2%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 92
YS+ Y+ +PPT+DGML GY IS++D+ +S +FL + + G + LD GAGI
Sbjct: 13 YSKAKTYWKQIPPTVDGMLGGYGHISNIDLNSSRKFLQRFLREGPNKTGTSCALDCGAGI 72
Query: 93 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 152
GRI+K LL F +D+++ + F+ +AK + ++ ++ + G+QDF PE + YD
Sbjct: 73 GRITKRLLLPLFRVVDMVDVTEDFLAKAKTYLGEEGKRVRNYFCCGLQDFSPEPSS--YD 130
Query: 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS-GVKNEYDDEDSSVVRSLP 211
VIWIQWV+ + D+ + +FL C++ L NGII+IKDN+A GV DD DSSV R L
Sbjct: 131 VIWIQWVIGHLTDQHLAEFLRRCRRGLRPNGIIVIKDNMAQEGVI--LDDVDSSVCRDLE 188
Query: 212 QFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
+ A L + E+ +P ++ +Y FAL+
Sbjct: 189 VVRRIIRSAGLSLLAEERQENLPDEIYHVYSFALR 223
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q4KLE6|NT1AB_XENLA N-terminal Xaa-Pro-Lys N-methyltransferase 1-B OS=Xenopus laevis GN=ntmt1-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 125/214 (58%), Gaps = 3/214 (1%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 92
Y + Y+ NVP T+DGML GY IS+ D+ +S +FL + G T LD GAGI
Sbjct: 13 YGKAQNYWKNVPATVDGMLGGYGHISNTDLNSSKKFLQRFLREGSQKTGNTCALDCGAGI 72
Query: 93 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 152
GRI+K LL F +D+++ + +F+ +AK + ++ ++ K + G+Q+F PE +YD
Sbjct: 73 GRITKRLLLPLFKTVDMVDVTDEFLNKAKSYLGEEGKRVGKYFCCGLQEFSPEP--SRYD 130
Query: 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQ 212
VIWIQWV+ + DE ++ FL CK L NGII+IKDNV + DD DSS+ R +
Sbjct: 131 VIWIQWVIGHLTDEHLVSFLQRCKLGLRPNGIILIKDNVTQD-GSIMDDADSSICRDIDL 189
Query: 213 FCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
L +A L + E+ P +++++ FA++
Sbjct: 190 VRKLIKQAGLSVLAIERQENFPDEIYQVFSFAMR 223
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q2T9N3|NTM1A_BOVIN N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Bos taurus GN=NTMT1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 127/215 (59%), Gaps = 5/215 (2%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 92
YS+ Y+ VP T+DGML GY IS +DI +S +FL + ++ G + LD GAGI
Sbjct: 13 YSKAKTYWKEVPATVDGMLGGYGHISSIDINSSRKFLQRFLREGQNKTGTSYALDCGAGI 72
Query: 93 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 152
GRI+K LL F +D+++ + F+ +AK + ++ ++ + G+QDF PE + YD
Sbjct: 73 GRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGKRVRNFFCCGLQDFSPEPQS--YD 130
Query: 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS-GVKNEYDDEDSSVVRSLP 211
VIWIQWV+ + D+ + +FL CK+ L NGII+IKDN+A GV DD DSSV R+L
Sbjct: 131 VIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVI--LDDVDSSVCRALD 188
Query: 212 QFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
+ A L + E+ +P ++ +Y AL+
Sbjct: 189 VVHRIVRSAGLSLLAQERQENLPDEIYHVYSLALR 223
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q6NN40|NTM1_DROME Alpha N-terminal protein methyltransferase 1 OS=Drosophila melanogaster GN=CG1675 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 119/218 (54%), Gaps = 11/218 (5%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 92
Y++ +Y+S VP T++GML G IS +DIQ SN FL + PG LD GAGI
Sbjct: 63 YNKAQKYWSEVPATVNGMLGGLGYISAIDIQGSNVFLREIRV-----PGNRLALDCGAGI 117
Query: 93 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD---CDKLDKCYNVGIQDFKPEDLNI 149
GR+++ LL F +DL+EQ F ++A+E + K+ + YNVG+Q F P
Sbjct: 118 GRVTRNLLIPRFSCVDLVEQDPAFADKAREYCTSEDGSRGKVGQIYNVGLQKFTPTQ--- 174
Query: 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRS 209
+YD++W QWVL + D D++ F KQ L + +K+NV+S K D DSSV R
Sbjct: 175 QYDLVWTQWVLGHLTDRDLVSFFRRIKQGLAPGAFLCLKENVSSSKKTVEDRNDSSVTRP 234
Query: 210 LPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALKP 247
L + +A + V+ K PK LF +YM A KP
Sbjct: 235 LDSYEHFLKEAGFRIVRKVKQQNFPKGLFPVYMIACKP 272
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q4KL94|NT1AA_XENLA N-terminal Xaa-Pro-Lys N-methyltransferase 1-A OS=Xenopus laevis GN=ntmt1-a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (397), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 126/215 (58%), Gaps = 4/215 (1%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSD-PGKTRVLDVGAG 91
Y + Y+ NVPPT+DGML GY IS++D+ S +FL Q+ S+ G LD GAG
Sbjct: 13 YGKAQNYWKNVPPTVDGMLGGYGHISNVDLNGSKKFLQRFLRQEGSNKTGNACALDCGAG 72
Query: 92 IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKY 151
IGRI+K LL F +D+++ + +F+ +AK + ++ ++ + G+Q+F PE +Y
Sbjct: 73 IGRITKRLLLPLFKTVDMVDVTDEFLNKAKSFLGEEGKRVGNYFCCGLQEFSPEP--NRY 130
Query: 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLP 211
DVIWIQWV+ + DE ++ FL C+ L NGII+IKDNV + DD DSS+ R +
Sbjct: 131 DVIWIQWVIGHLTDEHLVNFLQRCRLGLRPNGIIVIKDNVTQDA-SIMDDVDSSICREID 189
Query: 212 QFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
L +A L + E+ P ++ ++ FA++
Sbjct: 190 LVRKLIKQAGLSILAVERQENFPDEIYHVFSFAMR 224
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|B1H2P7|NTM1A_XENTR N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Xenopus tropicalis GN=ntmt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 127/215 (59%), Gaps = 4/215 (1%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSD-PGKTRVLDVGAG 91
Y + +Y+ NVP T+DGML GY IS++D+ S +FL Q+ S+ G LD GAG
Sbjct: 13 YCKAQKYWKNVPATVDGMLGGYGHISNIDLNGSKKFLQRFLRQEGSNKTGNMYALDCGAG 72
Query: 92 IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKY 151
IGRI+K LL F K+D+++ + +F+ +AK + ++ ++ + G+Q+F PE +Y
Sbjct: 73 IGRITKRLLLPLFKKVDMVDVTDEFLSKAKSYLGEEGSRVGNYFCCGLQEFSPEP--NRY 130
Query: 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLP 211
DVIWIQWV+ + DE ++ FL C L NGII+IKDNV V + DD DSS+ R +
Sbjct: 131 DVIWIQWVIGHLTDEHLVDFLKRCSLGLRPNGIIVIKDNVTQDV-SIMDDVDSSICRDID 189
Query: 212 QFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
L +A L + E+ P ++ ++ FA++
Sbjct: 190 LVRKLIKQAGLSLLAVERQENFPDEIYHVFSFAMR 224
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|P38340|NTM1_YEAST Alpha N-terminal protein methyltransferase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAE1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (379), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 131/221 (59%), Gaps = 8/221 (3%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSS---ISDLDIQTSNQFLSSLYCQKKSDPGKTR-VLDV 88
Y + +Y+++V T+DG+L GY + +D+ SN FL L + + +D+
Sbjct: 11 YEDAIDYWTDVDATVDGVLGGYGEGTVVPTMDVLGSNNFLRKLKSRMLPQENNVKYAVDI 70
Query: 89 GAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEI--LKDCDKLDKCYNVGIQDFKPED 146
GAGIGR+SK +L KH KIDL+E FIEQ E+ LKD ++ + Y VG+QD+ P+
Sbjct: 71 GAGIGRVSKTMLHKHAAKIDLVEPVKPFIEQMHVELAELKDKGQIGQIYEVGMQDWTPD- 129
Query: 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSV 206
KY +IW QW + + D +++ FL C L NG I++K+N +++D+ DSSV
Sbjct: 130 -AGKYWLIWCQWCVGHLPDAELVAFLKRCIVGLQPNGTIVVKENNTPTDTDDFDETDSSV 188
Query: 207 VRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALKP 247
RS +F +F +A LK + SE+ G+P+ L+ + M+ALKP
Sbjct: 189 TRSDAKFRQIFEEAGLKLIASERQRGLPRELYPVRMYALKP 229
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Responsible for the N-terminal methylation of the ribosomal proteins RPL12A, RPL12B, RPS25A and RPS25B. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 256 | ||||||
| 240849127 | 224 | alpha N-terminal protein methyltransfera | 0.859 | 0.982 | 0.459 | 3e-51 | |
| 158289938 | 276 | AGAP010397-PA [Anopheles gambiae str. PE | 0.835 | 0.775 | 0.460 | 2e-49 | |
| 91082171 | 232 | PREDICTED: similar to ad-003 [Tribolium | 0.839 | 0.926 | 0.461 | 3e-49 | |
| 157110873 | 259 | ad-003 [Aedes aegypti] gi|108883887|gb|E | 0.828 | 0.818 | 0.458 | 7e-49 | |
| 307181338 | 238 | Methyltransferase-like protein 11A [Camp | 0.828 | 0.890 | 0.465 | 7e-49 | |
| 383858034 | 229 | PREDICTED: alpha N-terminal protein meth | 0.828 | 0.925 | 0.455 | 3e-48 | |
| 340727541 | 240 | PREDICTED: alpha N-terminal protein meth | 0.820 | 0.875 | 0.457 | 7e-47 | |
| 350423069 | 240 | PREDICTED: alpha N-terminal protein meth | 0.820 | 0.875 | 0.457 | 8e-47 | |
| 312371817 | 227 | hypothetical protein AND_21614 [Anophele | 0.828 | 0.933 | 0.433 | 9e-47 | |
| 66562955 | 237 | PREDICTED: alpha N-terminal protein meth | 0.828 | 0.894 | 0.456 | 3e-46 |
| >gi|240849127|ref|NP_001155751.1| alpha N-terminal protein methyltransferase 1A [Acyrthosiphon pisum] gi|239792886|dbj|BAH72729.1| ACYPI008294 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 150/224 (66%), Gaps = 4/224 (1%)
Query: 30 RSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVG 89
R Y + Y+SNVP +++GML G+S ++++DI+ S+ FL L+ Q K P RVLD G
Sbjct: 4 RLDYEKSKNYWSNVPASVNGMLGGFSCVTNMDIKDSDLFLRKLF-QMKDGPSNGRVLDCG 62
Query: 90 AGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI 149
AGIGRIS+ LL KHF +D+LEQ KF+E+AK + ++ Y G+Q+F P D N
Sbjct: 63 AGIGRISENLLCKHFKCVDMLEQDEKFLEKAKLKCRGA--NVENFYCSGLQEFTPTD-NQ 119
Query: 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRS 209
KYDVIWIQWVL ++ D+D+IKFL C ++LN NG+I++K+N++ + E D DSS+ RS
Sbjct: 120 KYDVIWIQWVLGYLTDDDLIKFLKKCSKLLNTNGVIVVKENISQDDEGEIDAVDSSITRS 179
Query: 210 LPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALKPNKDKNS 253
Q+C++F +ANL C S P L+K+ +FAL+P DK++
Sbjct: 180 FIQYCIIFQQANLICKASRTQKNFPSELYKVKIFALQPANDKSN 223
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158289938|ref|XP_559058.3| AGAP010397-PA [Anopheles gambiae str. PEST] gi|157018399|gb|EAL41027.3| AGAP010397-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 139/217 (64%), Gaps = 3/217 (1%)
Query: 31 SHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGA 90
S+Y+ +Y+SNV PT+DGML G+ SIS +DI+ S QFL LY QK + PG+ LD GA
Sbjct: 59 SYYNNAKKYWSNVSPTVDGMLGGFGSISFIDIRGSEQFLKQLYKQKPA-PGRKWALDCGA 117
Query: 91 GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIK 150
GIGRISK LL FD++DL+EQ F E A++E+ KL +N G+QDF PE+ +
Sbjct: 118 GIGRISKNLLLPWFDQVDLVEQDEHFCETARKELADFTSKLGTVFNSGLQDFIPEE--GR 175
Query: 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSL 210
YD+IW QWVL + DED ++F C + L + G+I+IK+N + + D DSSV R L
Sbjct: 176 YDIIWAQWVLGHLTDEDAVQFFVRCAKGLARGGMIVIKENFTTSNVVDVDRTDSSVTRPL 235
Query: 211 PQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALKP 247
Q L + N++ VK ++ T PK L+ +YM AL+P
Sbjct: 236 LQMKQLLKQGNMRVVKEQRQTSFPKELYPVYMLALRP 272
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91082171|ref|XP_970910.1| PREDICTED: similar to ad-003 [Tribolium castaneum] gi|270007239|gb|EFA03687.1| hypothetical protein TcasGA2_TC013789 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 140/219 (63%), Gaps = 4/219 (1%)
Query: 31 SHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGA 90
S YS +Y+S +PPTIDGML G+ IS DI+ S L L+ K+ PG+ LD GA
Sbjct: 12 SFYSNAVQYWSEIPPTIDGMLGGFGHISQTDIRDSKLLLKQLFNSKEP-PGRGHALDCGA 70
Query: 91 GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIK 150
GIGRI+K+LL+ FD+IDL+EQ+ KF+ QA++ + + Y+VG+Q FKPE +
Sbjct: 71 GIGRITKHLLSDFFDRIDLVEQNPKFLSQAEQYLGPKLQEKVNYYSVGLQSFKPEK---Q 127
Query: 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSL 210
YDVIW QWVL + D D++ FL C+ L NG+IIIK+N++S + D+ DSSV R L
Sbjct: 128 YDVIWCQWVLGHLTDLDLVTFLKSCQSGLKPNGVIIIKENISSSEDIDKDERDSSVTRPL 187
Query: 211 PQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALKPNK 249
F +F+KA+L C + K PK L+ +YMF L+P K
Sbjct: 188 SLFRQIFAKADLDCYRQVKQRNFPKGLYTVYMFILRPQK 226
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157110873|ref|XP_001651286.1| ad-003 [Aedes aegypti] gi|108883887|gb|EAT48112.1| AAEL000844-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 141/216 (65%), Gaps = 4/216 (1%)
Query: 32 HYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAG 91
+Y + +Y+S V PT+DGML G+ SIS DI+ S QFL +L+ + K PG+ + LD GAG
Sbjct: 44 YYQDAKKYWSKVSPTVDGMLGGFGSISFTDIRGSEQFLKNLF-KIKPAPGRLQALDCGAG 102
Query: 92 IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKY 151
IGR+SK LL FD++DL+EQ ++F A++E L KL YNVG+QDF+PE KY
Sbjct: 103 IGRVSKNLLMPTFDRVDLVEQDTQFCATAEKE-LSPTGKLGTVYNVGLQDFQPE--AGKY 159
Query: 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLP 211
DVIW QWVL + D DI++F C + L KNGI+++K+N + + E D +DSSV R L
Sbjct: 160 DVIWSQWVLGHLTDTDIVEFFFRCTKALKKNGIMVMKENFTNAAEVEMDRQDSSVTRPLQ 219
Query: 212 QFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALKP 247
L ++ NL+ VK ++ PK L+ +YM A++P
Sbjct: 220 LMKQLLTRGNLRVVKEQRQKDFPKGLYPVYMLAVRP 255
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307181338|gb|EFN68972.1| Methyltransferase-like protein 11A [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 140/215 (65%), Gaps = 3/215 (1%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 92
Y +Y+ +PPT+DGML G+ IS DI+ S FL SL+ + K+ P + LD GAGI
Sbjct: 16 YVAAAKYWDRIPPTVDGMLGGFGFISQTDIKGSTLFLKSLF-ELKNPPSRAYALDCGAGI 74
Query: 93 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 152
GRI+K LL KHF +IDL+EQ+ KF+E AK + K K+D+ Y +G+QDF P + KYD
Sbjct: 75 GRITKNLLMKHFKRIDLVEQNPKFLEVAKISLEKYSSKIDQYYPIGLQDFCP--VANKYD 132
Query: 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQ 212
VIW QWVL + D+D+I+F C L NG++++K+N+ S E D EDSSV R +
Sbjct: 133 VIWCQWVLGHLQDDDLIEFFRKCSLGLKNNGVLVVKENITSSNNLEIDTEDSSVTRPMKC 192
Query: 213 FCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALKP 247
LF KA+L CVK ++ T P+ L+ ++MFAL+P
Sbjct: 193 LKFLFDKADLICVKEQQQTKFPRGLYPVHMFALRP 227
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383858034|ref|XP_003704508.1| PREDICTED: alpha N-terminal protein methyltransferase 1A-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 141/215 (65%), Gaps = 3/215 (1%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 92
Y+ EY+ ++PPT+DGML G+ IS +DI+ S +FL SL+ + K+ P +T LD GAGI
Sbjct: 14 YTAAAEYWEHIPPTVDGMLGGFGFISQIDIKGSTKFLKSLF-ELKTSPSRTFALDCGAGI 72
Query: 93 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 152
GRI+K LL HF IDL+EQ+ KF+E AK + ++ Y++G+Q+F + KYD
Sbjct: 73 GRITKNLLLNHFKYIDLVEQNPKFLEVAKTCLQNYSTRIGNYYSIGLQNF--DFTTKKYD 130
Query: 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQ 212
VIW QWVL + + +I+FL C L NG+IIIK+NV + K E D +DSSV R L +
Sbjct: 131 VIWCQWVLGHLKKDHLIEFLKRCSTGLRSNGLIIIKENVTTSAKLEIDTKDSSVTRPLSE 190
Query: 213 FCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALKP 247
F +F +++L C+K E+ P+ L+ +YMFALKP
Sbjct: 191 FHSIFQESDLICIKEEQQHKFPRGLYPVYMFALKP 225
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340727541|ref|XP_003402100.1| PREDICTED: alpha N-terminal protein methyltransferase 1A-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 98/214 (45%), Positives = 137/214 (64%), Gaps = 4/214 (1%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 92
Y+ +Y+ +VPPTIDGML G+ IS +DI+ S +FL +L+ + K+ P KT LD GAGI
Sbjct: 22 YTAAVKYWEHVPPTIDGMLGGFGFISQIDIKGSTKFLKALF-ELKNPPLKTYALDCGAGI 80
Query: 93 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 152
GRI+K LL HF +DL+EQ+ KF+E AK + ++ Y +G+Q+F KYD
Sbjct: 81 GRITKNLLLNHFKHVDLVEQNLKFLEVAKTCLKSHSTRICNYYPIGLQNF---CFTAKYD 137
Query: 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQ 212
VIW QWVL + +D+I+FL C L NG+I+IK+NV S E D +DSSV R L +
Sbjct: 138 VIWCQWVLGHLKHDDLIEFLKKCSSGLKSNGVIVIKENVTSSENLEIDTKDSSVTRPLSE 197
Query: 213 FCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
F +F ++NL C+K E+ P L+ +YMFALK
Sbjct: 198 FYRIFQESNLACIKEEQQHKFPHGLYPVYMFALK 231
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350423069|ref|XP_003493375.1| PREDICTED: alpha N-terminal protein methyltransferase 1A-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 98/214 (45%), Positives = 138/214 (64%), Gaps = 4/214 (1%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 92
Y+ +Y+ +VPPTIDGML G+ IS +DI+ S +FL +L+ + K+ P KT LD GAGI
Sbjct: 22 YTAAVKYWEHVPPTIDGMLGGFGFISQIDIKGSTKFLKALF-ELKNPPLKTYALDCGAGI 80
Query: 93 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 152
GRI+K LL HF +DL+EQ+ KF+E AK + ++ Y +G+Q+F KYD
Sbjct: 81 GRITKNLLLNHFKYVDLVEQNLKFLEVAKTCLKSHSTRICNYYPIGLQNF---CFTAKYD 137
Query: 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQ 212
VIW QWVL + +D+I+FL C L NG+I+IK+NV S E D +DSSV R L +
Sbjct: 138 VIWCQWVLGHLKHDDLIEFLKKCSSGLKSNGVIVIKENVTSSENLEIDTKDSSVTRPLSE 197
Query: 213 FCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
F +F ++NL C+K E+ P+ L+ +YMFALK
Sbjct: 198 FYRIFQESNLACIKEEQQHKFPRGLYPVYMFALK 231
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312371817|gb|EFR19909.1| hypothetical protein AND_21614 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 138/217 (63%), Gaps = 5/217 (2%)
Query: 32 HYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAG 91
+Y +Y+S + PT+DGML G+ SIS +DI+ S QFL LY + K PG R LD GAG
Sbjct: 11 YYKNAKKYWSTISPTVDGMLGGFGSISFIDIRGSEQFLRHLY-RLKPAPGHQRALDCGAG 69
Query: 92 IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIK 150
IGRI++ LL F+++DL+EQ +F + A+ LKDC K+ YN G+Q F P+ +
Sbjct: 70 IGRITRGLLVPFFEQVDLVEQDEQFCQTARTS-LKDCGPKIGTVYNEGLQSFVPQAGH-- 126
Query: 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSL 210
YD+IW+QWVL + DED+++F + C L ++G++++K+N S + D+ DSSV R L
Sbjct: 127 YDIIWVQWVLGHLTDEDLVQFFSRCANGLARSGMMVMKENFTSNDEVIADETDSSVTRPL 186
Query: 211 PQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALKP 247
L + NL+ VK ++ T PK L+ +YM ALKP
Sbjct: 187 AAMKALLKRGNLRVVKEQRQTSFPKELYPVYMLALKP 223
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|66562955|ref|XP_623109.1| PREDICTED: alpha N-terminal protein methyltransferase 1A-like isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/217 (45%), Positives = 138/217 (63%), Gaps = 5/217 (2%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 92
Y+ +Y+ +VP T+DGML G+ IS +DI+ S +FL +L+ + ++ P KT LD GAGI
Sbjct: 22 YTAAAKYWEHVPATVDGMLGGFGFISQIDIKGSTKFLKALF-ELENPPSKTFALDCGAGI 80
Query: 93 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIK-Y 151
GRI+K LL HF IDL+EQ+ KF+E AK + ++ Y +G+Q+F N K Y
Sbjct: 81 GRITKNLLLNHFKHIDLVEQNLKFLEVAKTYLKNYSTRIQNYYPIGLQNFY---FNTKKY 137
Query: 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLP 211
DVIW QWVL + D+I+FL C L NGII+IK+NV + E D +DSSV R L
Sbjct: 138 DVIWCQWVLGHLKHNDLIEFLKKCSCGLRSNGIIVIKENVTTSENLEVDTKDSSVTRPLS 197
Query: 212 QFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALKPN 248
+ +F K+NL C+K E+ P+ L+ +YMFALKPN
Sbjct: 198 ELYHIFQKSNLICIKEEQQHKFPRGLYPVYMFALKPN 234
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 256 | ||||||
| ZFIN|ZDB-GENE-040426-2055 | 223 | ntmt1 "N-terminal Xaa-Pro-Lys | 0.828 | 0.950 | 0.387 | 1.3e-38 | |
| UNIPROTKB|Q9BV86 | 223 | NTMT1 "N-terminal Xaa-Pro-Lys | 0.867 | 0.995 | 0.388 | 4.3e-38 | |
| UNIPROTKB|E2RQP1 | 223 | NTMT1 "Uncharacterized protein | 0.867 | 0.995 | 0.393 | 8.9e-38 | |
| UNIPROTKB|F1RQG3 | 223 | NTMT1 "Uncharacterized protein | 0.867 | 0.995 | 0.384 | 1.1e-37 | |
| UNIPROTKB|Q4KLE6 | 223 | ntmt1-b "N-terminal Xaa-Pro-Ly | 0.824 | 0.946 | 0.378 | 1.1e-37 | |
| MGI|MGI:1913867 | 223 | Ntmt1 "N-terminal Xaa-Pro-Lys | 0.867 | 0.995 | 0.379 | 1.5e-37 | |
| RGD|1306582 | 223 | Ntmt1 "N-terminal Xaa-Pro-Lys | 0.867 | 0.995 | 0.375 | 1.5e-37 | |
| UNIPROTKB|B1H2P7 | 224 | ntmt1 "N-terminal Xaa-Pro-Lys | 0.824 | 0.941 | 0.386 | 2.4e-37 | |
| UNIPROTKB|Q4KL94 | 224 | ntmt1-a "N-terminal Xaa-Pro-Ly | 0.824 | 0.941 | 0.381 | 3.9e-37 | |
| SGD|S000000465 | 232 | TAE1 "AdoMet-dependent proline | 0.839 | 0.926 | 0.386 | 3.9e-37 |
| ZFIN|ZDB-GENE-040426-2055 ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 84/217 (38%), Positives = 133/217 (61%)
Query: 31 SHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGA 90
S YSE Y+ +VPPT+DGML GY SIS +DI S +FL + + G LD GA
Sbjct: 11 SFYSEAEHYWKDVPPTVDGMLGGYGSISSIDINGSKKFLQKFLGEGQGKTGTGCALDCGA 70
Query: 91 GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIK 150
GIGRI+K LL F +DL++ + +F+++A+ + ++ +++ + G+QDF+P+ +
Sbjct: 71 GIGRITKRLLLPLFRTVDLVDVTQEFLDKARTYLGEESKRVENYFCCGLQDFQPQPE--R 128
Query: 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA-SGVKNEYDDEDSSVVRS 209
YDVIWIQWV+ + D+ +++FL C+ L G+I++KDNVA GV DD DSSV R
Sbjct: 129 YDVIWIQWVIGHLTDDHLVEFLRRCRSGLRPEGLIVVKDNVAYEGVIP--DDVDSSVCRD 186
Query: 210 LPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
L L ++A L + E+ P+ +++++ AL+
Sbjct: 187 LNVLHRLVARAGLSIIYEEQQQNFPEEIYQVHALALR 223
|
|
| UNIPROTKB|Q9BV86 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
Identities = 89/229 (38%), Positives = 133/229 (58%)
Query: 19 LTFTVAEKDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKS 78
+T V E + + YS+ Y+ +PPT+DGML GY IS +DI +S +FL + +
Sbjct: 1 MTSEVIEDE--KQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPN 58
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 138
G + LD GAGIGRI+K LL F ++D+++ + F+ QAK + ++ ++ + G
Sbjct: 59 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCG 118
Query: 139 IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS-GVKN 197
+QDF PE + YDVIWIQWV+ + D+ + +FL CK L NGII+IKDN+A GV
Sbjct: 119 LQDFTPEPDS--YDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI- 175
Query: 198 EYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
DD DSSV R L + A L + E+ +P ++ +Y FAL+
Sbjct: 176 -LDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR 223
|
|
| UNIPROTKB|E2RQP1 NTMT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 90/229 (39%), Positives = 132/229 (57%)
Query: 19 LTFTVAEKDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKS 78
+T V E + + YS+ Y+ VPPT+DGML GY IS +DI +S +FL + +
Sbjct: 1 MTSEVIEDE--KQFYSKAKTYWKEVPPTVDGMLGGYGHISSIDISSSRKFLQRFLREGPN 58
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 138
G + LD GAGIGRI+K LL F +D+++ + F+ +AK + ++ ++ + G
Sbjct: 59 KTGTSCALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGKRVRNYFCCG 118
Query: 139 IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS-GVKN 197
+QDF PE N YDVIWIQWV+ + D+ + +FL CKQ L NGII+IKDN+A GV
Sbjct: 119 LQDFSPEP-N-SYDVIWIQWVIGHLTDQHLAEFLRRCKQGLRPNGIIVIKDNMAQEGVI- 175
Query: 198 EYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
DD DSSV R L + A L + E+ +P ++ +Y AL+
Sbjct: 176 -LDDVDSSVCRDLEVVHRIVRSAGLSLLAQERQENLPDEIYHVYSLALR 223
|
|
| UNIPROTKB|F1RQG3 NTMT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 88/229 (38%), Positives = 133/229 (58%)
Query: 19 LTFTVAEKDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKS 78
+T V E + + YS+ Y+ VPPT+DGML GY IS +DI +S +FL + +
Sbjct: 1 MTSEVIEDE--KQFYSKAETYWKEVPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPN 58
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 138
G + LD GAGIGRI+K LL F +D+++ + F+ +AK + ++ ++ + G
Sbjct: 59 KTGTSCALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKSYLGEEGKRVRNYFCCG 118
Query: 139 IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS-GVKN 197
+QDF PE + YDVIWIQWV+ + D+ + +FL CK+ L NGII+IKDN+A GV
Sbjct: 119 LQDFSPEPHS--YDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVI- 175
Query: 198 EYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
DD DSSV R L + +A L + E+ +P ++ +Y AL+
Sbjct: 176 -LDDVDSSVCRDLDVVHRIIRRAGLSLLAQERQENLPDEIYHVYSLALR 223
|
|
| UNIPROTKB|Q4KLE6 ntmt1-b "N-terminal Xaa-Pro-Lys N-methyltransferase 1-B" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 81/214 (37%), Positives = 125/214 (58%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 92
Y + Y+ NVP T+DGML GY IS+ D+ +S +FL + G T LD GAGI
Sbjct: 13 YGKAQNYWKNVPATVDGMLGGYGHISNTDLNSSKKFLQRFLREGSQKTGNTCALDCGAGI 72
Query: 93 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 152
GRI+K LL F +D+++ + +F+ +AK + ++ ++ K + G+Q+F PE +YD
Sbjct: 73 GRITKRLLLPLFKTVDMVDVTDEFLNKAKSYLGEEGKRVGKYFCCGLQEFSPEPS--RYD 130
Query: 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQ 212
VIWIQWV+ + DE ++ FL CK L NGII+IKDNV + DD DSS+ R +
Sbjct: 131 VIWIQWVIGHLTDEHLVSFLQRCKLGLRPNGIILIKDNVTQD-GSIMDDADSSICRDIDL 189
Query: 213 FCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
L +A L + E+ P +++++ FA++
Sbjct: 190 VRKLIKQAGLSVLAIERQENFPDEIYQVFSFAMR 223
|
|
| MGI|MGI:1913867 Ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 87/229 (37%), Positives = 134/229 (58%)
Query: 19 LTFTVAEKDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKS 78
+T V E + + YS+ Y+ +PPT+DGML GY IS++D+ +S +FL + +
Sbjct: 1 MTSEVIEDE--KQFYSKAKTYWKQIPPTVDGMLGGYGHISNIDLNSSRKFLQRFLREGPN 58
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 138
G + LD GAGIGRI+K LL F +D+++ + F+ +AK + ++ ++ + G
Sbjct: 59 KTGTSCALDCGAGIGRITKRLLLPLFRVVDMVDVTEDFLAKAKTYLGEEGKRVRNYFCCG 118
Query: 139 IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS-GVKN 197
+QDF PE + YDVIWIQWV+ + D+ + +FL CK+ L NGII+IKDN+A GV
Sbjct: 119 LQDFSPEPGS--YDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVI- 175
Query: 198 EYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
DD DSSV R L + A L + E+ +P ++ +Y FAL+
Sbjct: 176 -LDDVDSSVCRDLEVVRRIIRTAGLSLLAEERQENLPDEIYHVYSFALR 223
|
|
| RGD|1306582 Ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 86/229 (37%), Positives = 134/229 (58%)
Query: 19 LTFTVAEKDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKS 78
+T V E + + YS+ Y+ +PPT+DGML GY IS++D+ +S +FL + +
Sbjct: 1 MTSEVIEDE--KQFYSKAKTYWKQIPPTVDGMLGGYGHISNIDLNSSRKFLQRFLREGPN 58
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 138
G + LD GAGIGRI+K LL F +D+++ + F+ +AK + ++ ++ + G
Sbjct: 59 KTGTSCALDCGAGIGRITKRLLLPLFRVVDMVDVTEDFLAKAKTYLGEEGKRVRNYFCCG 118
Query: 139 IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS-GVKN 197
+QDF PE + YDVIWIQWV+ + D+ + +FL C++ L NGII+IKDN+A GV
Sbjct: 119 LQDFSPEPSS--YDVIWIQWVIGHLTDQHLAEFLRRCRRGLRPNGIIVIKDNMAQEGVI- 175
Query: 198 EYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
DD DSSV R L + A L + E+ +P ++ +Y FAL+
Sbjct: 176 -LDDVDSSVCRDLEVVRRIIRSAGLSLLAEERQENLPDEIYHVYSFALR 223
|
|
| UNIPROTKB|B1H2P7 ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 83/215 (38%), Positives = 128/215 (59%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDP-GKTRVLDVGAG 91
Y + +Y+ NVP T+DGML GY IS++D+ S +FL Q+ S+ G LD GAG
Sbjct: 13 YCKAQKYWKNVPATVDGMLGGYGHISNIDLNGSKKFLQRFLRQEGSNKTGNMYALDCGAG 72
Query: 92 IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKY 151
IGRI+K LL F K+D+++ + +F+ +AK + ++ ++ + G+Q+F PE N +Y
Sbjct: 73 IGRITKRLLLPLFKKVDMVDVTDEFLSKAKSYLGEEGSRVGNYFCCGLQEFSPEP-N-RY 130
Query: 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLP 211
DVIWIQWV+ + DE ++ FL C L NGII+IKDNV V + DD DSS+ R +
Sbjct: 131 DVIWIQWVIGHLTDEHLVDFLKRCSLGLRPNGIIVIKDNVTQDV-SIMDDVDSSICRDID 189
Query: 212 QFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
L +A L + E+ P ++ ++ FA++
Sbjct: 190 LVRKLIKQAGLSLLAVERQENFPDEIYHVFSFAMR 224
|
|
| UNIPROTKB|Q4KL94 ntmt1-a "N-terminal Xaa-Pro-Lys N-methyltransferase 1-A" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 82/215 (38%), Positives = 127/215 (59%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDP-GKTRVLDVGAG 91
Y + Y+ NVPPT+DGML GY IS++D+ S +FL Q+ S+ G LD GAG
Sbjct: 13 YGKAQNYWKNVPPTVDGMLGGYGHISNVDLNGSKKFLQRFLRQEGSNKTGNACALDCGAG 72
Query: 92 IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKY 151
IGRI+K LL F +D+++ + +F+ +AK + ++ ++ + G+Q+F PE N +Y
Sbjct: 73 IGRITKRLLLPLFKTVDMVDVTDEFLNKAKSFLGEEGKRVGNYFCCGLQEFSPEP-N-RY 130
Query: 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLP 211
DVIWIQWV+ + DE ++ FL C+ L NGII+IKDNV + DD DSS+ R +
Sbjct: 131 DVIWIQWVIGHLTDEHLVNFLQRCRLGLRPNGIIVIKDNVTQDA-SIMDDVDSSICREID 189
Query: 212 QFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
L +A L + E+ P ++ ++ FA++
Sbjct: 190 LVRKLIKQAGLSILAVERQENFPDEIYHVFSFAMR 224
|
|
| SGD|S000000465 TAE1 "AdoMet-dependent proline methyltransferase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 87/225 (38%), Positives = 133/225 (59%)
Query: 31 SH--YSEVTEYYSNVPPTIDGMLNGYSS---ISDLDIQTSNQFLSSLYCQKKSDPGKTR- 84
SH Y + +Y+++V T+DG+L GY + +D+ SN FL L + +
Sbjct: 7 SHIKYEDAIDYWTDVDATVDGVLGGYGEGTVVPTMDVLGSNNFLRKLKSRMLPQENNVKY 66
Query: 85 VLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEI--LKDCDKLDKCYNVGIQDF 142
+D+GAGIGR+SK +L KH KIDL+E FIEQ E+ LKD ++ + Y VG+QD+
Sbjct: 67 AVDIGAGIGRVSKTMLHKHAAKIDLVEPVKPFIEQMHVELAELKDKGQIGQIYEVGMQDW 126
Query: 143 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDE 202
P D KY +IW QW + + D +++ FL C L NG I++K+N +++D+
Sbjct: 127 TP-DAG-KYWLIWCQWCVGHLPDAELVAFLKRCIVGLQPNGTIVVKENNTPTDTDDFDET 184
Query: 203 DSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALKP 247
DSSV RS +F +F +A LK + SE+ G+P+ L+ + M+ALKP
Sbjct: 185 DSSVTRSDAKFRQIFEEAGLKLIASERQRGLPRELYPVRMYALKP 229
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P38340 | NTM1_YEAST | 2, ., 1, ., 1, ., 2, 4, 4 | 0.3800 | 0.8320 | 0.9181 | yes | N/A |
| Q6NN40 | NTM1_DROME | 2, ., 1, ., 1, ., 2, 4, 4 | 0.3853 | 0.8085 | 0.75 | yes | N/A |
| Q6NWX7 | NTM1A_DANRE | 2, ., 1, ., 1, ., 2, 4, 4 | 0.3870 | 0.8281 | 0.9506 | yes | N/A |
| Q9N4D9 | NTM1_CAEEL | 2, ., 1, ., 1, ., 2, 4, 4 | 0.3594 | 0.8242 | 0.9017 | yes | N/A |
| Q9BV86 | NTM1A_HUMAN | 2, ., 1, ., 1, ., 2, 4, 4 | 0.4 | 0.8203 | 0.9417 | yes | N/A |
| Q8R2U4 | NTM1A_MOUSE | 2, ., 1, ., 1, ., 2, 4, 4 | 0.3906 | 0.8203 | 0.9417 | yes | N/A |
| Q5BJX0 | NTM1A_RAT | 2, ., 1, ., 1, ., 2, 4, 4 | 0.3860 | 0.8203 | 0.9417 | yes | N/A |
| Q10CT5 | NTM1_ORYSJ | 2, ., 1, ., 1, ., 2, 4, 4 | 0.3690 | 0.8437 | 0.7035 | yes | N/A |
| Q2T9N3 | NTM1A_BOVIN | 2, ., 1, ., 1, ., 2, 4, 4 | 0.3906 | 0.8203 | 0.9417 | yes | N/A |
| B1H2P7 | NTM1A_XENTR | 2, ., 1, ., 1, ., 2, 4, 4 | 0.3813 | 0.8242 | 0.9419 | yes | N/A |
| Q55DH6 | NTM1_DICDI | 2, ., 1, ., 1, ., 2, 4, 4 | 0.4109 | 0.8125 | 0.7703 | yes | N/A |
| O13748 | NTM1_SCHPO | 2, ., 1, ., 1, ., 2, 4, 4 | 0.3738 | 0.8007 | 0.9360 | yes | N/A |
| D2H163 | NTM1A_AILME | 2, ., 1, ., 1, ., 2, 4, 4 | 0.3906 | 0.8203 | 0.9417 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
| 4th Layer | 2.1.1.8 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 256 | |||
| pfam05891 | 217 | pfam05891, Methyltransf_PK, AdoMet dependent proli | 2e-72 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 9e-10 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 1e-09 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 2e-09 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-08 | |
| TIGR04345 | 242 | TIGR04345, ovoA_Cterm, putative 4-mercaptohistidin | 1e-06 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 3e-05 | |
| PRK12335 | 287 | PRK12335, PRK12335, tellurite resistance protein T | 4e-05 | |
| PTZ00098 | 263 | PTZ00098, PTZ00098, phosphoethanolamine N-methyltr | 4e-04 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 6e-04 | |
| pfam05219 | 265 | pfam05219, DREV, DREV methyltransferase | 0.001 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 0.001 | |
| PLN02336 | 475 | PLN02336, PLN02336, phosphoethanolamine N-methyltr | 0.002 |
| >gnl|CDD|218798 pfam05891, Methyltransf_PK, AdoMet dependent proline di-methyltransferase | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 2e-72
Identities = 96/217 (44%), Positives = 132/217 (60%), Gaps = 8/217 (3%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRV---LDVG 89
YS+ Y+ V T+DGML GY +SD+D+ S FL L ++ PGK R LD G
Sbjct: 6 YSKAIAYWEGVSATVDGMLGGYGHVSDIDVNGSRNFLRRL--LRERLPGKRRHLVALDCG 63
Query: 90 AGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI 149
AGIGR++K LL F K+DL+E F+ +AKE + + K+ + VG+QDF PE+
Sbjct: 64 AGIGRVTKNLLLPLFSKVDLVEPVEDFLAKAKEYLAEGKKKVGNFFCVGLQDFTPEEG-- 121
Query: 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRS 209
+YD+IWIQW + + DED++ FL CK L NG I++K+NVA +D EDSSV RS
Sbjct: 122 RYDLIWIQWCIGHLTDEDLVAFLKRCKGGLKPNGFIVVKENVAQ-NGFVFDKEDSSVTRS 180
Query: 210 LPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
F LF KA LK V E+ G+P+ L+ + M+ALK
Sbjct: 181 EAYFKKLFKKAGLKLVAEERQKGLPQELYPVKMYALK 217
|
This protein is expressed in the tail neuron PVT and in uterine cells in C. elegans [worm-base]. In Saccharomyces cerevisiae this is AdoMet dependent proline di-methyltransferase. This enzyme catalyzes the di-methylation of ribosomal proteins Rpl12 and Rps25 at N-terminal proline residues. The methyltransferases described here specifically recognise the N-terminal X-Pro-Lys sequence motif, and they may account for nearly all previously described eukaryotic protein N-terminal methylation reactions. A number of other yeast and human proteins also share the recognition motif and may be similarly modified. As with other methyltransferases, this family carries the characteristic GxGxG motif. Length = 217 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 9e-10
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 84 RVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD- 141
RVLD+G G G ++ L ++ ++ S + +E A+E KL +
Sbjct: 4 RVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENA-----KLALGPRITFVQG 58
Query: 142 --FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
DL +D ++I +L+ L+ +L G +++
Sbjct: 59 DAPDALDLLEGFDAVFIGGGGGDLLE-----LLDALASLLKPGGRLVL 101
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-09
Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 86 LDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 144
LD+G G G + + LL + ++ S +E A E + + + D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDA-I 59
Query: 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGII 185
+ +DV+ VL + D L +++L G++
Sbjct: 60 DLDPGSFDVVVASNVLHHL--ADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-09
Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 84 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 143
RVLD+G G G ++ L + ++ ++ S +E A++ L V D +
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA---LLADNVEVLKGDAE 57
Query: 144 --PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188
P + + +DVI L ++ ED+ +FL +++L G++++
Sbjct: 58 ELPPEADESFDVIISDPPLHHLV-EDLARFLEEARRLLKPGGVLVLT 103
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-08
Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 16/105 (15%)
Query: 86 LDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE 145
LDVG G G +++ L + ++ ++ S + + A++ E
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKR-----------APRKFVVGDAE 49
Query: 146 DLNIK---YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
DL +DV+ VL + D + L ++L G ++I
Sbjct: 50 DLPFPDESFDVVVSSLVLHHL--PDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|234556 TIGR04345, ovoA_Cterm, putative 4-mercaptohistidine N1-methyltranferase | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 40/138 (28%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQA-------------------- 120
+ R LD+G +GR S + LA++FD++D ++ S++FI A
Sbjct: 41 SRKRALDIGCAVGRAS-FELARYFDEVDGIDFSARFIRPAVALKERGSLRYALKEEGELV 99
Query: 121 --KEEILKDCDKLDKCY-NVGIQDFKPED-LNIK-----YDVIWIQWVLMFILDE--DII 169
KE L D LD+ V F D N+K YD+I + +LD D
Sbjct: 100 SFKEVTLSDL-GLDEVRDRV---SFFQGDACNLKPHFTGYDLI----LAANLLDRLYDPA 151
Query: 170 KFLNLCKQILNKNGIIII 187
FL+ + LN G+++I
Sbjct: 152 AFLSSIHERLNPGGLLVI 169
|
Ovothiol A is N1-methyl-4-mercaptohistidine. In the absence of S-adenosylmethione, a methyl donor, the intermediate produced is 4-mercaptohistidine. In both Erwinia tasmaniensis and Trypanosoma cruzi, a protein occurs with 5-histidylcysteine sulfoxide synthase activity, but these two enzymes and most homologs share an additional C-terminal methyltransferase domain. Thus OvoA may be a bifunctional enzyme with 5-histidylcysteine sulfoxide synthase and 4-mercaptohistidine N1-methyltranferase activity. This model describes C-terminal putative 4-mercaptohistidine N1-methyltranferase domain [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs]. Length = 242 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 43.7 bits (100), Expect = 3e-05
Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 5/133 (3%)
Query: 80 PGKTRVLDVGAGIGRISKYL-LAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 138
PG VLD+G G GR++ L + ++ S + + A+ L
Sbjct: 47 PGGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVAD 106
Query: 139 IQDFK-PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN 197
P + + +D++ VL + K L ++L G +++ D + G+
Sbjct: 107 ALGGVLPFEDSASFDLVISLLVLHLL---PPAKALRELLRVLKPGGRLVLSDLLRDGLLE 163
Query: 198 EYDDEDSSVVRSL 210
+
Sbjct: 164 GRLAALLGFGDPV 176
|
Length = 257 |
| >gnl|CDD|183450 PRK12335, PRK12335, tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-05
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 72 LYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCD 129
L + PGK LD+G G GR S YL FD +D+ +QS + +++ E+ +
Sbjct: 113 LEAVQTVKPGKA--LDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEK-----E 165
Query: 130 KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDE---DIIKFLNLCKQILNKNGIII 186
L+ G+ D + +YD I VLMF+ E IIK N+ + N G +
Sbjct: 166 NLN--IRTGLYDINSASIQEEYDFILSTVVLMFLNRERIPAIIK--NMQEHT-NPGGYNL 220
Query: 187 I 187
I
Sbjct: 221 I 221
|
Length = 287 |
| >gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 4e-04
Identities = 44/206 (21%), Positives = 95/206 (46%), Gaps = 17/206 (8%)
Query: 53 GYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQ 112
G IS I+ + + LS + + S +VLD+G+G+G KY+ K+ + ++
Sbjct: 29 GEDYISSGGIEATTKILSDIELNENS-----KVLDIGSGLGGGCKYINEKYGAHVHGVDI 83
Query: 113 SSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFL 172
K + AK + ++ +DF PE+ +D+I+ + ++ + D K
Sbjct: 84 CEKMVNIAKLRNSDKNKIEFEANDILKKDF-PEN---TFDMIYSRDAILHLSYADKKKLF 139
Query: 173 NLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVR-------SLPQFCLLFSKANLKCV 225
C + L NGI++I D A ++N +D+E + ++ + ++ L N + V
Sbjct: 140 EKCYKWLKPNGILLITDYCADKIEN-WDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNV 198
Query: 226 KSEKVTGMPKSLFKIYMFALKPNKDK 251
++ ++ L ++ + L+ K++
Sbjct: 199 VAKDISDYWLELLQVELKKLEEKKEE 224
|
Length = 263 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 6e-04
Identities = 29/153 (18%), Positives = 51/153 (33%), Gaps = 34/153 (22%)
Query: 84 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 143
RVLD+G G G + + L + FD + ++ S + D L
Sbjct: 25 RVLDIGCGTGILLRLLRERGFD-VTGVDPSPAAVLIFSLFDAPDPAVLAG---------- 73
Query: 144 PEDLNIKYDVIW----IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY 199
KYD+I ++ + D L +++L G+++I +A +
Sbjct: 74 ------KYDLITAFEVLEHL------PDPPALLQQLRELLKPGGVLLISTPLADDDARLF 121
Query: 200 DDEDSSVVR-------SLPQFCLLFSKANLKCV 225
+ R S L KA + V
Sbjct: 122 ANWHYLRPRNTHISFYSEESLKRLLEKAGFELV 154
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|218506 pfam05219, DREV, DREV methyltransferase | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.001
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 23/143 (16%)
Query: 51 LNGYSSISDLDIQTSNQFLSSLYCQKKS-DPGKT--RVLDVGAGIGRISKYLLAKHFDKI 107
+NG+ + I + QF L G+ +LD+GAG G I+ +A F+++
Sbjct: 61 INGFLGRGSMFIFSEEQFRKLLVIGGFQPASGQEPVTLLDLGAGDGEITLR-MAPTFEEV 119
Query: 108 DLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GIQDFKPEDLNIKYDVIWIQWVLMFILDE 166
E S ++ K+ K YNV +++ D+N D+I + + +LD
Sbjct: 120 YATELSWTMRDRLKK----------KNYNVLTEIEWQETDVN--LDLI----LCLNLLDR 163
Query: 167 --DIIKFLNLCKQILNKNGIIII 187
D K L L NG +I+
Sbjct: 164 CFDPFKLLEDIHLALAPNGRVIV 186
|
This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown. However, these proteins appear to be related to other methyltransferases (Bateman A pers obs). Length = 265 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.001
Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 85 VLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 144
+LD+G G GR+ + L + ++ S + +E AKE + + D
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERL----RDKGPKVRFVVADA-- 54
Query: 145 EDL---NIKYDVIWIQWVLMFIL-DEDIIKFLNLCKQILNKNG 183
DL +D++ + + L + + L ++L G
Sbjct: 55 RDLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.002
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 50 MLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLL--AKHFDKI 107
ML+ S SDLD + + LS L GK+ VL++GAGIGR + L A +
Sbjct: 13 MLD--SKASDLDKEERPEILSLL----PPYEGKS-VLELGAGIGRFTGELAKKAGQVIAL 65
Query: 108 DLLEQSSKFIEQAKEEILKDCDKLDK--CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD 165
D +E K K E + K K C +V D D ++ D+I+ W+LM++ D
Sbjct: 66 DFIESVIK-----KNESINGHYKNVKFMCADVTSPDLNISDGSV--DLIFSNWLLMYLSD 118
Query: 166 EDI 168
+++
Sbjct: 119 KEV 121
|
Length = 475 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 256 | |||
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 100.0 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.89 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.89 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.88 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.87 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.87 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.86 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.86 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.85 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.85 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.85 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.85 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.85 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.84 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.84 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.83 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.83 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.82 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.81 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.81 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.81 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.81 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.81 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.81 | |
| KOG1270|consensus | 282 | 99.8 | ||
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.8 | |
| KOG3178|consensus | 342 | 99.8 | ||
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.8 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.8 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.78 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.78 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.78 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.78 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.77 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.77 | |
| KOG1540|consensus | 296 | 99.77 | ||
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.77 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.76 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.76 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.76 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.76 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.75 | |
| KOG2361|consensus | 264 | 99.74 | ||
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.74 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.73 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.73 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.73 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.73 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.72 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.72 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.72 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.72 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.72 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.71 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.71 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.71 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.71 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.7 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.7 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.7 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.7 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.7 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.7 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.69 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.69 | |
| KOG1271|consensus | 227 | 99.68 | ||
| KOG4300|consensus | 252 | 99.68 | ||
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.68 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.67 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.67 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.67 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.67 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.66 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.66 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.66 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.64 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.64 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.64 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.64 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.64 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.63 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.62 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.61 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.6 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.59 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.59 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.59 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.59 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.59 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.58 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.57 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.57 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.56 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.56 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.55 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.55 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.54 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.54 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.53 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.52 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.52 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.51 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.5 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.5 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.5 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.49 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.49 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.49 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.48 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.48 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.48 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.47 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.47 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.46 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.46 | |
| KOG3010|consensus | 261 | 99.45 | ||
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.44 | |
| KOG1541|consensus | 270 | 99.44 | ||
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.42 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.42 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.42 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.41 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.41 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.41 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.41 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.4 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.39 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.38 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.38 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 99.38 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.38 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.37 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.37 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.36 | |
| KOG2899|consensus | 288 | 99.36 | ||
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.35 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.35 | |
| PLN02366 | 308 | spermidine synthase | 99.34 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 99.33 | |
| KOG3045|consensus | 325 | 99.33 | ||
| PRK03612 | 521 | spermidine synthase; Provisional | 99.32 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.32 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.31 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.29 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.29 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.29 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.28 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.28 | |
| KOG1975|consensus | 389 | 99.28 | ||
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.28 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.27 | |
| KOG1499|consensus | 346 | 99.27 | ||
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.26 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.26 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.26 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.25 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.24 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.24 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.22 | |
| PLN02476 | 278 | O-methyltransferase | 99.21 | |
| KOG2940|consensus | 325 | 99.21 | ||
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.21 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.18 | |
| KOG3191|consensus | 209 | 99.15 | ||
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 99.15 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.12 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.11 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.11 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.1 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 99.08 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 99.08 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.05 | |
| KOG3987|consensus | 288 | 99.05 | ||
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 99.05 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 99.04 | |
| KOG2904|consensus | 328 | 99.04 | ||
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.03 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 99.03 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.03 | |
| KOG1500|consensus | 517 | 99.02 | ||
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.01 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.0 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.99 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.99 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.98 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.98 | |
| PLN02823 | 336 | spermine synthase | 98.98 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.98 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.93 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.93 | |
| KOG3420|consensus | 185 | 98.92 | ||
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.91 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.9 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.9 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.9 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.89 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.88 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.88 | |
| KOG1661|consensus | 237 | 98.87 | ||
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.86 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.86 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.85 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.85 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.83 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.8 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.78 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.77 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.77 | |
| KOG3201|consensus | 201 | 98.75 | ||
| KOG2798|consensus | 369 | 98.73 | ||
| KOG0820|consensus | 315 | 98.72 | ||
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.71 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.71 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.7 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 98.69 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.69 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.66 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.63 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.62 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.55 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 98.55 | |
| KOG1663|consensus | 237 | 98.55 | ||
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.53 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.51 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.51 | |
| KOG1269|consensus | 364 | 98.5 | ||
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.49 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.49 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.42 | |
| KOG1709|consensus | 271 | 98.42 | ||
| KOG2352|consensus | 482 | 98.42 | ||
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.4 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.37 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.36 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.36 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.35 | |
| KOG2915|consensus | 314 | 98.35 | ||
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.35 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.35 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.34 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.28 | |
| KOG1331|consensus | 293 | 98.28 | ||
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.22 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.21 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.17 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 98.13 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.11 | |
| KOG2187|consensus | 534 | 98.09 | ||
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 98.05 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.01 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.97 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.92 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.84 | |
| KOG1501|consensus | 636 | 97.79 | ||
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.77 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.75 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 97.71 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.71 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.66 | |
| PHA01634 | 156 | hypothetical protein | 97.64 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.63 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.58 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 97.51 | |
| KOG2730|consensus | 263 | 97.45 | ||
| KOG2793|consensus | 248 | 97.45 | ||
| KOG4589|consensus | 232 | 97.43 | ||
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.41 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 97.39 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 97.37 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.35 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.26 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 97.25 | |
| KOG4058|consensus | 199 | 97.17 | ||
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 97.07 | |
| KOG1596|consensus | 317 | 96.98 | ||
| KOG3115|consensus | 249 | 96.96 | ||
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.94 | |
| KOG1562|consensus | 337 | 96.91 | ||
| KOG0822|consensus | 649 | 96.87 | ||
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 96.82 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 96.77 | |
| KOG2920|consensus | 282 | 96.77 | ||
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.75 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 96.72 | |
| KOG1122|consensus | 460 | 96.7 | ||
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.65 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 96.64 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.64 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 96.57 | |
| KOG1227|consensus | 351 | 96.56 | ||
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 96.54 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 96.51 | |
| KOG2651|consensus | 476 | 96.46 | ||
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.19 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 96.16 | |
| KOG2539|consensus | 491 | 96.14 | ||
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.07 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 96.04 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.88 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 95.84 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 95.76 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.5 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 95.3 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 95.22 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 95.13 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 94.88 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 94.77 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 94.67 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.65 | |
| KOG0821|consensus | 326 | 94.6 | ||
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.46 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 94.43 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 94.42 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.36 | |
| KOG2198|consensus | 375 | 94.24 | ||
| KOG2078|consensus | 495 | 94.18 | ||
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 94.14 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 94.08 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 94.07 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 93.99 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 93.91 | |
| KOG1201|consensus | 300 | 93.84 | ||
| KOG0024|consensus | 354 | 93.83 | ||
| KOG3924|consensus | 419 | 93.81 | ||
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 93.7 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 93.33 | |
| KOG2352|consensus | 482 | 92.95 | ||
| KOG2671|consensus | 421 | 92.74 | ||
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 92.36 | |
| KOG1099|consensus | 294 | 92.19 | ||
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 91.82 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 91.66 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 91.65 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 91.59 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 91.41 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 91.38 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 91.35 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 91.27 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 91.27 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 91.14 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 90.94 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 90.84 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 90.75 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 90.41 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 90.36 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 90.3 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 90.22 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 90.12 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 90.1 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 90.1 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 89.93 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 89.78 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 89.67 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 89.63 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 89.36 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 89.34 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 89.19 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 88.97 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 88.94 | |
| KOG1253|consensus | 525 | 88.74 | ||
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 88.67 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 88.62 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 88.58 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 88.52 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 88.51 | |
| PF07109 | 97 | Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl | 88.3 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 88.26 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 88.08 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 88.06 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 87.99 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 87.89 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 87.8 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 87.54 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 87.26 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 87.21 | |
| COG5379 | 414 | BtaA S-adenosylmethionine:diacylglycerol 3-amino-3 | 87.18 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 87.17 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 86.9 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 86.62 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 86.61 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 86.52 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 86.42 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 86.25 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 86.12 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 86.01 | |
| KOG2912|consensus | 419 | 85.92 | ||
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 85.82 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 85.8 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 85.78 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 85.65 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 85.63 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 85.62 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 85.24 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 85.2 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 84.99 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 84.94 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 84.9 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 84.66 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 84.64 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 84.56 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 84.38 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 84.37 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 84.26 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 84.01 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 83.75 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 83.65 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 83.51 | |
| PF14740 | 289 | DUF4471: Domain of unknown function (DUF4471) | 83.24 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 83.18 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 83.17 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 83.15 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 83.14 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 82.95 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 82.83 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 82.78 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 82.71 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 82.57 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 82.54 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 82.5 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 82.27 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 82.06 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 81.99 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 81.92 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 81.81 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 81.79 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 81.77 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 81.52 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 81.5 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 81.43 | |
| PF11253 | 127 | DUF3052: Protein of unknown function (DUF3052); In | 81.28 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 81.28 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 81.15 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 81.14 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 81.12 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 81.11 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 80.96 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 80.96 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 80.9 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 80.89 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 80.78 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 80.66 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 80.45 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 80.43 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 80.4 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 80.39 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 80.17 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 80.15 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 80.13 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 80.09 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 80.03 |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=219.41 Aligned_cols=215 Identities=49% Similarity=0.832 Sum_probs=176.2
Q ss_pred cchhhhhhhhccCCCCcccccccCCCCccccchhhhHHHHHHHHhcc-CCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEE
Q psy8370 30 RSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQK-KSDPGKTRVLDVGAGIGRISKYLLAKHFDKID 108 (256)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~ 108 (256)
..||..+.+||+..+++.++|+|+|++.+..|+..++.||.++.... .......+.||.|+|-|+.+..++...+.+|.
T Consensus 3 ~~~y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VD 82 (218)
T PF05891_consen 3 KIWYEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVD 82 (218)
T ss_dssp CHHHHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEE
T ss_pred ccHHHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeE
Confidence 56899999999999999999999999999999999999999988321 12345789999999999999998888888999
Q ss_pred EEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 109 LLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 109 ~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.||+.+..++.|++.+.....++..+++..+.++.|... +||+|++.+++.|++++++..+|++|.+.|+|+|.+++-
T Consensus 83 lVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~--~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 83 LVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEG--KYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp EEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT---EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCC--cEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 999999999999987765334555889999999988766 899999999999999999999999999999999999999
Q ss_pred ecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCcceeeeEEEec
Q psy8370 189 DNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246 (256)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~l~ 246 (256)
++....+...++...+++.|+.+.++++|+++|++++..+.|.++|.++||+.||+||
T Consensus 161 EN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~fP~~L~pV~myaLr 218 (218)
T PF05891_consen 161 ENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKGFPKELYPVRMYALR 218 (218)
T ss_dssp EEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT--TTS-EEEEEEEE
T ss_pred ecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccCCCccceEEEEEEeC
Confidence 9999888777899999999999999999999999999999999999999999999986
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-23 Score=161.17 Aligned_cols=183 Identities=16% Similarity=0.196 Sum_probs=87.7
Q ss_pred CCccchhhhhhhhccCCCCcccccccCCCCccccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc-C-
Q psy8370 27 DGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-F- 104 (256)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~- 104 (256)
+.....|+.....|+....-.. +|.. ..+++.+.+.. ...++.+|||+|||||.++..+++.. .
T Consensus 7 ~~v~~~Fd~ia~~YD~~n~~ls--~g~~--------~~wr~~~~~~~----~~~~g~~vLDv~~GtG~~~~~l~~~~~~~ 72 (233)
T PF01209_consen 7 QYVRKMFDRIAPRYDRMNDLLS--FGQD--------RRWRRKLIKLL----GLRPGDRVLDVACGTGDVTRELARRVGPN 72 (233)
T ss_dssp ----------------------------------------SHHHHHH----T--S--EEEEET-TTSHHHHHHGGGSS--
T ss_pred HHHHHHHHHHHHHhCCCccccC--CcHH--------HHHHHHHHhcc----CCCCCCEEEEeCCChHHHHHHHHHHCCCc
Confidence 3456677777777776432210 0100 11222333333 45778899999999999999987663 2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCc
Q psy8370 105 DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNG 183 (256)
Q Consensus 105 ~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG 183 (256)
.+|+|+|+|+.|++.++++....+ .++ .++++|+++++.+++ +||+|++.+.+++++ +..+.+++++|+|||||
T Consensus 73 ~~v~~vD~s~~ML~~a~~k~~~~~~~~i-~~v~~da~~lp~~d~--sfD~v~~~fglrn~~--d~~~~l~E~~RVLkPGG 147 (233)
T PF01209_consen 73 GKVVGVDISPGMLEVARKKLKREGLQNI-EFVQGDAEDLPFPDN--SFDAVTCSFGLRNFP--DRERALREMYRVLKPGG 147 (233)
T ss_dssp -EEEEEES-HHHHHHHHHHHHHTT--SE-EEEE-BTTB--S-TT---EEEEEEES-GGG-S--SHHHHHHHHHHHEEEEE
T ss_pred cEEEEecCCHHHHHHHHHHHHhhCCCCe-eEEEcCHHHhcCCCC--ceeEEEHHhhHHhhC--CHHHHHHHHHHHcCCCe
Confidence 389999999999999999998764 467 999999999998776 999999999999995 45689999999999999
Q ss_pred EEEEEecccCCCCc------------------cccCCCCce---------eeCHHHHHHHHHhcCCcEEEee
Q psy8370 184 IIIIKDNVASGVKN------------------EYDDEDSSV---------VRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 184 ~l~i~~~~~~~~~~------------------~~~~~~~~~---------~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
.+++.+...+.... .+......+ ..+.+++.++++++||+.++..
T Consensus 148 ~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~ 219 (233)
T PF01209_consen 148 RLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYR 219 (233)
T ss_dssp EEEEEEEEB-SSHHHHHHHHH---------------------------------------------------
T ss_pred EEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99998765554321 000000111 1378999999999999977654
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-22 Score=154.68 Aligned_cols=144 Identities=18% Similarity=0.210 Sum_probs=117.0
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...++.+|||+|||||..+..+++.. ..+|+++|+|+.|++.++++....+ .++ +++.+|++++|+++. +||+|+
T Consensus 48 ~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i-~fv~~dAe~LPf~D~--sFD~vt 124 (238)
T COG2226 48 GIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNV-EFVVGDAENLPFPDN--SFDAVT 124 (238)
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccce-EEEEechhhCCCCCC--ccCEEE
Confidence 34589999999999999999998764 3399999999999999999998755 236 999999999999887 999999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc--------cc----CC-------CCce---------e
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE--------YD----DE-------DSSV---------V 207 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--------~~----~~-------~~~~---------~ 207 (256)
+.+.+++++ +..++|++++|+|||||.+++.+...+..... .. .. ...+ .
T Consensus 125 ~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~ 202 (238)
T COG2226 125 ISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRF 202 (238)
T ss_pred eeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhC
Confidence 999999995 66799999999999999999987666543210 00 00 0001 1
Q ss_pred eCHHHHHHHHHhcCCcEEE
Q psy8370 208 RSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 208 ~~~~~~~~~l~~~gf~~~~ 226 (256)
.+.+++..++.++||..+.
T Consensus 203 p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 203 PDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred CCHHHHHHHHHhcCceEEe
Confidence 2778999999999999876
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=159.92 Aligned_cols=194 Identities=21% Similarity=0.219 Sum_probs=136.1
Q ss_pred CccchhhhhhhhccCCCCcccccccCCCCc--cccchhhhH-HHHHHHHhccCCC-----CCCCeEEEEcCCCCHhHHHH
Q psy8370 28 GNRSHYSEVTEYYSNVPPTIDGMLNGYSSI--SDLDIQTSN-QFLSSLYCQKKSD-----PGKTRVLDVGAGIGRISKYL 99 (256)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~l~~~~~~~~~~-----~~~~~vLDiG~G~G~~~~~l 99 (256)
....||+...+.|+..+.. .++.+|... ...+...+. +++..++ ..... .++.+|||||||+|.++..+
T Consensus 60 ~i~~~Yd~~~~~~e~~~g~--~~h~g~~~~~~~~~~~~~aq~~~~~~~l-~~~~~~~~~~~~~~~VLDiGCG~G~~~~~L 136 (340)
T PLN02244 60 GIAEFYDESSGVWEDVWGE--HMHHGYYDPGASRGDHRQAQIRMIEESL-AWAGVPDDDEKRPKRIVDVGCGIGGSSRYL 136 (340)
T ss_pred HHHHHHccchHHHHHHhCC--cceeeccCCCCCcccHHHHHHHHHHHHH-HhcCCCcccCCCCCeEEEecCCCCHHHHHH
Confidence 3456788777777775532 133333221 122333333 4455555 33333 56789999999999999999
Q ss_pred HHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhh
Q psy8370 100 LAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQ 177 (256)
Q Consensus 100 ~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~ 177 (256)
+.....+|+|+|+|+.+++.++++....+ .++ .+..+|+.+.+..++ +||+|++..+++|++ +...+++++++
T Consensus 137 a~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v-~~~~~D~~~~~~~~~--~FD~V~s~~~~~h~~--d~~~~l~e~~r 211 (340)
T PLN02244 137 ARKYGANVKGITLSPVQAARANALAAAQGLSDKV-SFQVADALNQPFEDG--QFDLVWSMESGEHMP--DKRKFVQELAR 211 (340)
T ss_pred HHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCce-EEEEcCcccCCCCCC--CccEEEECCchhccC--CHHHHHHHHHH
Confidence 87643499999999999999999877654 356 899999988876655 899999999999995 45689999999
Q ss_pred hcCCCcEEEEEecccCCCCc---ccc--------C----CCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 178 ILNKNGIIIIKDNVASGVKN---EYD--------D----EDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 178 ~LkpgG~l~i~~~~~~~~~~---~~~--------~----~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
+|||||.+++.+........ .+. . .......+.+++.++++++||+.+....
T Consensus 212 vLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d 278 (340)
T PLN02244 212 VAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTED 278 (340)
T ss_pred HcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeee
Confidence 99999999998653321110 000 0 0001124789999999999999987653
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-21 Score=152.47 Aligned_cols=147 Identities=18% Similarity=0.117 Sum_probs=114.0
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHh-cC-CeEEEEeCCHHHHHHHHHHHHh----cCCCcceEEEccccccCCCCCCCce
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILK----DCDKLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~~----~~~~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
...++.+|||+|||+|.++..+++. +. .+|+|+|+|+.|++.|+++... ...++ .+.++|+.+++..++ +|
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i-~~~~~d~~~lp~~~~--sf 146 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNI-EWIEGDATDLPFDDC--YF 146 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCe-EEEEcccccCCCCCC--CE
Confidence 4567889999999999999988775 32 3899999999999999887542 11356 899999998887666 89
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc--c------------cc---CCCC---------c
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN--E------------YD---DEDS---------S 205 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--~------------~~---~~~~---------~ 205 (256)
|+|++..++++++ +...++++++++|||||.+++.+........ . .. .... .
T Consensus 147 D~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~ 224 (261)
T PLN02233 147 DAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSIN 224 (261)
T ss_pred eEEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHH
Confidence 9999999999995 4568999999999999999998765543211 0 00 0001 1
Q ss_pred eeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 206 VVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 206 ~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
...+.+++.++++++||+.+....
T Consensus 225 ~f~s~~el~~ll~~aGF~~~~~~~ 248 (261)
T PLN02233 225 EYLTGEELEKLALEAGFSSAKHYE 248 (261)
T ss_pred hcCCHHHHHHHHHHCCCCEEEEEE
Confidence 135899999999999999887554
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.4e-21 Score=153.28 Aligned_cols=145 Identities=12% Similarity=0.126 Sum_probs=113.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.++.+|||||||+|.++..++..+. +|+|+|+++.+++.|+.+....+ .++ .++++|+.+++.... +||+|++.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i-~~~~~dae~l~~~~~--~FD~Vi~~ 205 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTI-EYLCTTAEKLADEGR--KFDAVLSL 205 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccce-eEEecCHHHhhhccC--CCCEEEEh
Confidence 3567999999999999999987766 89999999999999998765432 356 889999988765544 89999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCC---------c---cccCCCCc--eeeCHHHHHHHHHhcCCc
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK---------N---EYDDEDSS--VVRSLPQFCLLFSKANLK 223 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------~---~~~~~~~~--~~~~~~~~~~~l~~~gf~ 223 (256)
.+++|+++ ...++++++++|||||.+++......... . ......+. ..++++++.++++++||+
T Consensus 206 ~vLeHv~d--~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~ 283 (322)
T PLN02396 206 EVIEHVAN--PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVD 283 (322)
T ss_pred hHHHhcCC--HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCe
Confidence 99999964 45899999999999999999865433110 0 01111122 246999999999999999
Q ss_pred EEEeeee
Q psy8370 224 CVKSEKV 230 (256)
Q Consensus 224 ~~~~~~~ 230 (256)
+++..-.
T Consensus 284 i~~~~G~ 290 (322)
T PLN02396 284 VKEMAGF 290 (322)
T ss_pred EEEEeee
Confidence 9877543
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-20 Score=147.04 Aligned_cols=150 Identities=21% Similarity=0.329 Sum_probs=116.4
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
....++.+|||||||+|..+..++.....+|+++|+|+.+++.++++... ..++ .+...|+.+.+.++. +||+|++
T Consensus 48 l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~~~i-~~~~~D~~~~~~~~~--~FD~V~s 123 (263)
T PTZ00098 48 IELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-KNKI-EFEANDILKKDFPEN--TFDMIYS 123 (263)
T ss_pred CCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-CCce-EEEECCcccCCCCCC--CeEEEEE
Confidence 35678899999999999999988765333899999999999999988654 2356 888999887665555 8999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc---ccc---CCCCceeeCHHHHHHHHHhcCCcEEEeeee
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---EYD---DEDSSVVRSLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
..+++|++.++...++++++++|||||.+++++........ ... ........+..++.++++++||+.+.....
T Consensus 124 ~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d~ 203 (263)
T PTZ00098 124 RDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKDI 203 (263)
T ss_pred hhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEeC
Confidence 99999987667889999999999999999998764433111 000 001112248899999999999999876643
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.8e-20 Score=139.78 Aligned_cols=141 Identities=18% Similarity=0.208 Sum_probs=111.1
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEEEec
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..++.+|||+|||+|..+..+++++. +|+|+|+|+.+++.++++....+. ++ .+...|+.+.... . +||+|++.
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v-~~~~~d~~~~~~~-~--~fD~I~~~ 102 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNL-HTAVVDLNNLTFD-G--EYDFILST 102 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcc-eEEecChhhCCcC-C--CcCEEEEe
Confidence 45678999999999999999998877 899999999999999998876552 35 7788888776542 3 69999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
.+++++++++...+++++.+.|+|||.+++.......... . .....+.++.+++.+.++ ||+++...
T Consensus 103 ~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~-~-~~~~~~~~~~~el~~~~~--~~~~~~~~ 169 (197)
T PRK11207 103 VVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP-C-TVGFPFAFKEGELRRYYE--GWEMVKYN 169 (197)
T ss_pred cchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCC-C-CCCCCCccCHHHHHHHhC--CCeEEEee
Confidence 9999998878899999999999999997665433322211 1 112235578899998886 89988764
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-21 Score=145.76 Aligned_cols=149 Identities=23% Similarity=0.254 Sum_probs=118.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
-++.+|||+|||.|.++..+++.|+ +|+|+|.++.+++.|+......+..+ .+.+..++++....+ +||+|+|..+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i-~y~~~~~edl~~~~~--~FDvV~cmEV 133 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNI-DYRQATVEDLASAGG--QFDVVTCMEV 133 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccc-cchhhhHHHHHhcCC--CccEEEEhhH
Confidence 4789999999999999999999996 99999999999999999887766666 788888888876655 8999999999
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc------------cccC--CCCceeeCHHHHHHHHHhcCCcEE
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------------EYDD--EDSSVVRSLPQFCLLFSKANLKCV 225 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------------~~~~--~~~~~~~~~~~~~~~l~~~gf~~~ 225 (256)
++|++++ ..+++.|.+.+||||.+++++........ .... ........++++...+...|+.+.
T Consensus 134 lEHv~dp--~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~ 211 (243)
T COG2227 134 LEHVPDP--ESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKII 211 (243)
T ss_pred HHccCCH--HHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEE
Confidence 9999654 47999999999999999998765544221 1111 111223578888888888899888
Q ss_pred EeeeecCCC
Q psy8370 226 KSEKVTGMP 234 (256)
Q Consensus 226 ~~~~~~~~~ 234 (256)
.......+|
T Consensus 212 ~~~g~~y~p 220 (243)
T COG2227 212 DRKGLTYNP 220 (243)
T ss_pred eecceEecc
Confidence 766544444
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=147.82 Aligned_cols=196 Identities=17% Similarity=0.201 Sum_probs=129.9
Q ss_pred cCCccchhhhhhhhccCCCCcccccccCCCCccccchhhhH-HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHh-c
Q psy8370 26 KDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSN-QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-H 103 (256)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~ 103 (256)
.+....+|+...++|...-........+|..-...++..+. +.+..+. +...+.++.+|||||||.|.++..++++ |
T Consensus 7 ~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~-~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g 85 (273)
T PF02353_consen 7 RENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLC-EKLGLKPGDRVLDIGCGWGGLAIYAAERYG 85 (273)
T ss_dssp HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHH-TTTT--TT-EEEEES-TTSHHHHHHHHHH-
T ss_pred HHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHH-HHhCCCCCCEEEEeCCCccHHHHHHHHHcC
Confidence 33456788888888887554432223333333444555665 4455555 7778999999999999999999999998 6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCC
Q psy8370 104 FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNK 181 (256)
Q Consensus 104 ~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkp 181 (256)
+ +|+|+.+|+...+.+++++...+ .++ .+...|..+++. +||.|++..+++|+.......+++++.+.|+|
T Consensus 86 ~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v-~v~~~D~~~~~~-----~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp 158 (273)
T PF02353_consen 86 C-HVTGITLSEEQAEYARERIREAGLEDRV-EVRLQDYRDLPG-----KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKP 158 (273)
T ss_dssp --EEEEEES-HHHHHHHHHHHHCSTSSSTE-EEEES-GGG--------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSET
T ss_pred c-EEEEEECCHHHHHHHHHHHHhcCCCCce-EEEEeeccccCC-----CCCEEEEEechhhcChhHHHHHHHHHHHhcCC
Confidence 5 99999999999999999998776 456 888899887643 69999999999999888888999999999999
Q ss_pred CcEEEEEecccCCCCccc-----------cCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 182 NGIIIIKDNVASGVKNEY-----------DDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 182 gG~l~i~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
||.+++............ ....+....+..++...+++.||++.....
T Consensus 159 gG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~~~ 217 (273)
T PF02353_consen 159 GGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDVEN 217 (273)
T ss_dssp TEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EEEEEEE
T ss_pred CcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEEEE
Confidence 999998654333321100 111222335788898889999999987653
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-20 Score=145.85 Aligned_cols=144 Identities=20% Similarity=0.228 Sum_probs=110.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.++.+|||+|||+|.++..++..+. +|+++|+|+.|++.|+++....+ .++ .++++|+.++.+... ++||+|++.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v-~~~~~d~~~l~~~~~-~~fD~V~~~ 119 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNM-QFIHCAAQDIAQHLE-TPVDLILFH 119 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccce-EEEEcCHHHHhhhcC-CCCCEEEeh
Confidence 4568999999999999999988876 89999999999999999887654 356 888999887653222 389999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCC----------C---ccc-----cCCCCceeeCHHHHHHHHHh
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV----------K---NEY-----DDEDSSVVRSLPQFCLLFSK 219 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----------~---~~~-----~~~~~~~~~~~~~~~~~l~~ 219 (256)
.+++|+++ ...+++++.++|||||.+++........ . ... .........+++++.+++++
T Consensus 120 ~vl~~~~~--~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~ 197 (255)
T PRK11036 120 AVLEWVAD--PKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEE 197 (255)
T ss_pred hHHHhhCC--HHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHH
Confidence 99999954 4589999999999999998864322110 0 000 00111234688999999999
Q ss_pred cCCcEEEee
Q psy8370 220 ANLKCVKSE 228 (256)
Q Consensus 220 ~gf~~~~~~ 228 (256)
+||+++...
T Consensus 198 aGf~~~~~~ 206 (255)
T PRK11036 198 AGWQIMGKT 206 (255)
T ss_pred CCCeEeeee
Confidence 999998544
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-20 Score=137.88 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=107.2
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
+..+++++||+|||.|+.+.+|+++|+ .|+++|.|+.+++.+++.....+..+ .....|+.+...+ . .||+|++.
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i-~~~~~Dl~~~~~~-~--~yD~I~st 101 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDI-RTRVADLNDFDFP-E--EYDFIVST 101 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TE-EEEE-BGCCBS-T-T--TEEEEEEE
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCcee-EEEEecchhcccc-C--CcCEEEEE
Confidence 455789999999999999999999999 89999999999999988887777677 8899999887764 3 69999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
.++++++++.+.++++.+.+.++|||.+++.......... ......+.+.+.++...+. |++++...+
T Consensus 102 ~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p--~~~~~~f~~~~~EL~~~y~--dW~il~y~E 169 (192)
T PF03848_consen 102 VVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYP--CPSPFPFLLKPGELREYYA--DWEILKYNE 169 (192)
T ss_dssp SSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS----SS--S--B-TTHHHHHTT--TSEEEEEEE
T ss_pred EEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCC--CCCCCCcccCHHHHHHHhC--CCeEEEEEc
Confidence 9999999988999999999999999998886543332221 1223345567888888884 788876543
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-20 Score=136.44 Aligned_cols=143 Identities=23% Similarity=0.289 Sum_probs=107.9
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~ 145 (256)
.+.+..+. . ...++.+|||||||+|.++..+...++ +++|+|+++.+++. ... .....+.......
T Consensus 10 ~~~~~~~~-~--~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~---------~~~-~~~~~~~~~~~~~ 75 (161)
T PF13489_consen 10 ADLLERLL-P--RLKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK---------RNV-VFDNFDAQDPPFP 75 (161)
T ss_dssp HHHHHHHH-T--CTTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH---------TTS-EEEEEECHTHHCH
T ss_pred HHHHHHHh-c--ccCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh---------hhh-hhhhhhhhhhhcc
Confidence 34555555 1 157789999999999999999987777 99999999999887 122 3333333333334
Q ss_pred CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCC--------CCccccCCCCceeeCHHHHHHHH
Q psy8370 146 DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG--------VKNEYDDEDSSVVRSLPQFCLLF 217 (256)
Q Consensus 146 ~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l 217 (256)
.+ +||+|+++.+++|++ +...+++++.++|||||.+++.+..... .........+...++.+++.+++
T Consensus 76 ~~--~fD~i~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 151 (161)
T PF13489_consen 76 DG--SFDLIICNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLL 151 (161)
T ss_dssp SS--SEEEEEEESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHH
T ss_pred cc--chhhHhhHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHH
Confidence 44 899999999999996 5679999999999999999999876531 11111111455778999999999
Q ss_pred HhcCCcEEE
Q psy8370 218 SKANLKCVK 226 (256)
Q Consensus 218 ~~~gf~~~~ 226 (256)
+++||++++
T Consensus 152 ~~~G~~iv~ 160 (161)
T PF13489_consen 152 EQAGFEIVE 160 (161)
T ss_dssp HHTTEEEEE
T ss_pred HHCCCEEEE
Confidence 999999876
|
... |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=141.44 Aligned_cols=198 Identities=15% Similarity=0.163 Sum_probs=145.5
Q ss_pred hcCCccchhhhhhhhccCCCCcccccccCCCCccccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC
Q psy8370 25 EKDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF 104 (256)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~ 104 (256)
.......||+...++|...........-.|..-+...+.+++..-.+.+....++.++.+|||||||.|.++..++++..
T Consensus 16 ~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~ 95 (283)
T COG2230 16 AAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG 95 (283)
T ss_pred hhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC
Confidence 34566778887777777754433222222222223345555533333443777899999999999999999999988853
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCC
Q psy8370 105 DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKN 182 (256)
Q Consensus 105 ~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 182 (256)
.+|+|+++|++..+.+++++...+ .++ ++...|..++. + .||-|++..+++|+..+....+++.+++.|+||
T Consensus 96 v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v-~v~l~d~rd~~---e--~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~ 169 (283)
T COG2230 96 VTVVGVTLSEEQLAYAEKRIAARGLEDNV-EVRLQDYRDFE---E--PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG 169 (283)
T ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCCccc-EEEeccccccc---c--ccceeeehhhHHHhCcccHHHHHHHHHhhcCCC
Confidence 499999999999999999998877 356 88888888774 2 599999999999998888899999999999999
Q ss_pred cEEEEEecccCCCCcc-------ccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 183 GIIIIKDNVASGVKNE-------YDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 183 G~l~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
|.+++........... .....+....+..++.....++||.+....
T Consensus 170 G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~ 222 (283)
T COG2230 170 GRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVE 222 (283)
T ss_pred ceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHh
Confidence 9999976555443210 011122233477888888999999988765
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-19 Score=136.49 Aligned_cols=142 Identities=15% Similarity=0.196 Sum_probs=110.2
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
..++.+|||+|||+|.++..++.++. +|+|+|+|+.+++.++++....+.++ .+...|+...+. .. +||+|++..
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v-~~~~~d~~~~~~-~~--~fD~I~~~~ 102 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPL-RTDAYDINAAAL-NE--DYDFIFSTV 102 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCc-eeEeccchhccc-cC--CCCEEEEec
Confidence 44568999999999999999988887 89999999999999998877655455 677777765443 23 799999999
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
++++++.++...+++++++.|+|||.+++.......... ......+..+.+++.+.+. +|+++....
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~--~~~~~~~~~~~~el~~~f~--~~~~~~~~e 169 (195)
T TIGR00477 103 VFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYP--CHMPFSFTFKEDELRQYYA--DWELLKYNE 169 (195)
T ss_pred ccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCC--CCCCcCccCCHHHHHHHhC--CCeEEEeec
Confidence 999998778889999999999999997665433322111 1112345689999999885 588887663
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=141.32 Aligned_cols=150 Identities=14% Similarity=0.158 Sum_probs=113.3
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeE
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKH-F-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
....++.+|||+|||+|.++..++... . .+|+|+|+++.+++.++++....+ .++ .++.+|+.+.+...+ +||+
T Consensus 41 l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~--~fD~ 117 (231)
T TIGR02752 41 MNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNV-ELVHGNAMELPFDDN--SFDY 117 (231)
T ss_pred cCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCce-EEEEechhcCCCCCC--CccE
Confidence 356678899999999999999987663 2 389999999999999999886544 356 888999988765544 8999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc-----------ccCC----------------CCce
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-----------YDDE----------------DSSV 206 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----------~~~~----------------~~~~ 206 (256)
|++..++++++ +..++++++.++|+|||.+++.+...+..... .... ....
T Consensus 118 V~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 195 (231)
T TIGR02752 118 VTIGFGLRNVP--DYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRD 195 (231)
T ss_pred EEEecccccCC--CHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHH
Confidence 99999999985 44689999999999999999876543322100 0000 0001
Q ss_pred eeCHHHHHHHHHhcCCcEEEeeeec
Q psy8370 207 VRSLPQFCLLFSKANLKCVKSEKVT 231 (256)
Q Consensus 207 ~~~~~~~~~~l~~~gf~~~~~~~~~ 231 (256)
..+.+++.++++++||+.++.....
T Consensus 196 ~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 196 FPGMDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred cCCHHHHHHHHHHcCCCeeEEEEcc
Confidence 2477899999999999988766433
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.3e-19 Score=142.30 Aligned_cols=140 Identities=21% Similarity=0.206 Sum_probs=110.8
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhh
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 160 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l 160 (256)
++.+|||+|||+|..+..++..+. +|+|+|+|+.+++.++++....+.++ .+...|+..... .. +||+|++..++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v-~~~~~D~~~~~~-~~--~fD~I~~~~vl 194 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNI-RTGLYDINSASI-QE--EYDFILSTVVL 194 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCce-EEEEechhcccc-cC--CccEEEEcchh
Confidence 456999999999999999988887 89999999999999999887766566 777888876544 33 79999999999
Q ss_pred hccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 161 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
+++++++...+++++.+.|+|||.+++.......... ......+.++..++.+.+. +|+++...+
T Consensus 195 ~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~--~~~p~~~~~~~~el~~~~~--~~~i~~~~e 259 (287)
T PRK12335 195 MFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP--CPMPFSFTFKEGELKDYYQ--DWEIVKYNE 259 (287)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC--CCCCCCcccCHHHHHHHhC--CCEEEEEec
Confidence 9998888889999999999999997765433222211 1122345678999999995 599887653
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-18 Score=142.08 Aligned_cols=147 Identities=21% Similarity=0.218 Sum_probs=110.5
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD--CDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...++.+|||||||+|.++..++..++..|+|+|+|+.++..++...... ..++ .+..+|+.+++. .. +||+|+
T Consensus 119 ~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i-~~~~~d~e~lp~-~~--~FD~V~ 194 (322)
T PRK15068 119 SPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRA-HLLPLGIEQLPA-LK--AFDTVF 194 (322)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCe-EEEeCCHHHCCC-cC--CcCEEE
Confidence 34567899999999999999998888778999999999887654432221 2356 889999988876 44 799999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-------cccCCC-CceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EYDDED-SSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
|..+++|.. +...+++++++.|+|||.+++.......... .+.... ..+..+.+++..+++++||+.++.
T Consensus 195 s~~vl~H~~--dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~ 272 (322)
T PRK15068 195 SMGVLYHRR--SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRI 272 (322)
T ss_pred ECChhhccC--CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEE
Confidence 999999984 4568999999999999999987543222111 011111 123358899999999999999876
Q ss_pred eee
Q psy8370 228 EKV 230 (256)
Q Consensus 228 ~~~ 230 (256)
...
T Consensus 273 ~~~ 275 (322)
T PRK15068 273 VDV 275 (322)
T ss_pred EeC
Confidence 643
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-18 Score=139.17 Aligned_cols=149 Identities=17% Similarity=0.190 Sum_probs=109.1
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH--hcCCCcceEEEccccccCCCCCCCcee
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEIL--KDCDKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
......++.+|||||||+|.++..++..++..|+|+|+|+.|+..++..-. ....++ .+...++.+++.. . +||
T Consensus 115 ~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v-~~~~~~ie~lp~~-~--~FD 190 (314)
T TIGR00452 115 PHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRA-ILEPLGIEQLHEL-Y--AFD 190 (314)
T ss_pred HhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCe-EEEECCHHHCCCC-C--CcC
Confidence 333456678999999999999999888887789999999999876543222 112345 6778888877653 3 699
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-------cccCC-CCceeeCHHHHHHHHHhcCCcE
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EYDDE-DSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
+|++..+++|.+ +....+++++++|+|||.+++.+........ .+... ...+..+..++..+++++||+.
T Consensus 191 ~V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~ 268 (314)
T TIGR00452 191 TVFSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFEN 268 (314)
T ss_pred EEEEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeE
Confidence 999999999995 4468999999999999999987543322111 00101 1123358899999999999999
Q ss_pred EEeee
Q psy8370 225 VKSEK 229 (256)
Q Consensus 225 ~~~~~ 229 (256)
++...
T Consensus 269 V~i~~ 273 (314)
T TIGR00452 269 FRILD 273 (314)
T ss_pred EEEEe
Confidence 87654
|
Known examples to date are restricted to the proteobacteria. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-19 Score=140.20 Aligned_cols=140 Identities=20% Similarity=0.276 Sum_probs=105.1
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
....++.+|||||||+|.++..++.... .+|+|+|+|+.|++.+++. ++ .+..+|+.++. ... +||+|+
T Consensus 25 l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~-~~~~~d~~~~~-~~~--~fD~v~ 94 (255)
T PRK14103 25 VGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GV-DARTGDVRDWK-PKP--DTDVVV 94 (255)
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CC-cEEEcChhhCC-CCC--CceEEE
Confidence 3456789999999999999999987742 3899999999999999763 45 88899998774 334 799999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-----------cc----cCC---CCceeeCHHHHHHHH
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-----------EY----DDE---DSSVVRSLPQFCLLF 217 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----------~~----~~~---~~~~~~~~~~~~~~l 217 (256)
++.++||++ +...++++++++|||||.+++.......... .+ ... ......+.+++.+++
T Consensus 95 ~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l 172 (255)
T PRK14103 95 SNAALQWVP--EHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELL 172 (255)
T ss_pred EehhhhhCC--CHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHH
Confidence 999999995 4468999999999999999986432110000 00 000 011235889999999
Q ss_pred HhcCCcEEEee
Q psy8370 218 SKANLKCVKSE 228 (256)
Q Consensus 218 ~~~gf~~~~~~ 228 (256)
+++||++....
T Consensus 173 ~~aGf~v~~~~ 183 (255)
T PRK14103 173 TDAGCKVDAWE 183 (255)
T ss_pred HhCCCeEEEEe
Confidence 99999865444
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=133.18 Aligned_cols=141 Identities=13% Similarity=0.060 Sum_probs=107.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-------------cCCCcceEEEccccccCCCC
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK-------------DCDKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------~~~~i~~~~~~d~~~~~~~~ 146 (256)
.++.+|||+|||.|..+.+|+.+|+ +|+|+|+|+.+++.+...... .+.++ .+.++|+.++....
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNI-EIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCce-EEEEccCCCCCccc
Confidence 4678999999999999999999999 899999999999986442210 12356 88999998876532
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
. +.||.|+...++++++++.+..+++.+.+.|+|||.+++......... .....+..+.+++.+++.. +|.+..
T Consensus 111 ~-~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~----~~gpp~~~~~~eL~~~f~~-~~~i~~ 184 (213)
T TIGR03840 111 L-GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSE----MAGPPFSVSPAEVEALYGG-HYEIEL 184 (213)
T ss_pred C-CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCC----CCCcCCCCCHHHHHHHhcC-CceEEE
Confidence 2 379999999999999999999999999999999998666543322111 1123356789999998863 566655
Q ss_pred ee
Q psy8370 227 SE 228 (256)
Q Consensus 227 ~~ 228 (256)
..
T Consensus 185 ~~ 186 (213)
T TIGR03840 185 LE 186 (213)
T ss_pred Ee
Confidence 44
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=150.00 Aligned_cols=146 Identities=19% Similarity=0.200 Sum_probs=113.4
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
...++.+|||||||+|..+..++.....+|+|+|+|+.+++.|+++......++ .+..+|+...+.+.+ +||+|++.
T Consensus 263 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v-~~~~~d~~~~~~~~~--~fD~I~s~ 339 (475)
T PLN02336 263 DLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSV-EFEVADCTKKTYPDN--SFDVIYSR 339 (475)
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCce-EEEEcCcccCCCCCC--CEEEEEEC
Confidence 356678999999999999998877643489999999999999998876544466 889999987765544 89999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc-----ccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-----YDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
.+++|++ +...++++++++|+|||.+++.+......... ..........+.+++.++++++||+++..+
T Consensus 340 ~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~ 413 (475)
T PLN02336 340 DTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAE 413 (475)
T ss_pred CcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeee
Confidence 9999995 45689999999999999999987544322110 000111234588999999999999998654
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-19 Score=140.02 Aligned_cols=144 Identities=17% Similarity=0.188 Sum_probs=110.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHh--c-CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAK--H-FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~--~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
.++.+|||+|||+|..+..++.. . ..+++|+|+|+.|++.|++++...+ .++ .++++|+.+.+. . .+|+|
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v-~~~~~d~~~~~~--~--~~D~v 129 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPV-DVIEGDIRDIAI--E--NASMV 129 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCe-EEEeCChhhCCC--C--CCCEE
Confidence 56789999999999999888663 1 2389999999999999999987644 357 889999887654 2 48999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccc-------------cCC-------------CCceee
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY-------------DDE-------------DSSVVR 208 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-------------~~~-------------~~~~~~ 208 (256)
+++.+++++++++...+++++++.|||||.+++++.......... ... ......
T Consensus 130 v~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~ 209 (247)
T PRK15451 130 VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTD 209 (247)
T ss_pred ehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccC
Confidence 999999999887778999999999999999999875433221100 000 001124
Q ss_pred CHHHHHHHHHhcCCcEEEee
Q psy8370 209 SLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 209 ~~~~~~~~l~~~gf~~~~~~ 228 (256)
++++..++++++||..+...
T Consensus 210 ~~~~~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 210 SVETHKARLHKAGFEHSELW 229 (247)
T ss_pred CHHHHHHHHHHcCchhHHHH
Confidence 88899999999999876543
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=121.17 Aligned_cols=106 Identities=25% Similarity=0.418 Sum_probs=85.5
Q ss_pred CCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhc--CCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKD--CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
|+.+|||||||+|.++..+++. ...+++|+|+|+.+++.++++.... ..++ .+++.|+ ....... +.||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i-~~~~~d~-~~~~~~~-~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRI-TFVQGDA-EFDPDFL-EPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTE-EEEESCC-HGGTTTS-SCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCe-EEEECcc-ccCcccC-CCCCEEEEC
Confidence 5789999999999999999883 3338999999999999999999433 3678 9999999 3222221 369999999
Q ss_pred h-hhhccCH-HHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 158 W-VLMFILD-EDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 158 ~-~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
. .++++.. ++...+++.+++.|+|||.+++..
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9 5665543 577889999999999999999864
|
... |
| >KOG1270|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-19 Score=134.92 Aligned_cols=146 Identities=19% Similarity=0.210 Sum_probs=109.4
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC---C----CcceEEEccccccCCCCCCCceeEE
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC---D----KLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~----~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
+.+|||+|||+|.++..|++.|+ +|+|+|+++.|++.|++...... . ++ .+.+.++++.. +.||+|
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l-~~~~~~~E~~~-----~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRL-EYEDTDVEGLT-----GKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceee-ehhhcchhhcc-----ccccee
Confidence 47899999999999999988887 99999999999999999833221 1 12 34444544432 379999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc--------------cccCCCCceeeCHHHHHHHHHhc
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN--------------EYDDEDSSVVRSLPQFCLLFSKA 220 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~~~ 220 (256)
+|..+++|+ .+++.+++.+.+.|||||.+++++..+..... +..........++.++..++.++
T Consensus 163 vcsevleHV--~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~ 240 (282)
T KOG1270|consen 163 VCSEVLEHV--KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNAN 240 (282)
T ss_pred eeHHHHHHH--hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhc
Confidence 999999999 67789999999999999999998654433211 11111222335899999999999
Q ss_pred CCcEEEeeeecCCCCc
Q psy8370 221 NLKCVKSEKVTGMPKS 236 (256)
Q Consensus 221 gf~~~~~~~~~~~~~~ 236 (256)
++++....-...+|..
T Consensus 241 ~~~v~~v~G~~y~p~s 256 (282)
T KOG1270|consen 241 GAQVNDVVGEVYNPIS 256 (282)
T ss_pred Ccchhhhhcccccccc
Confidence 9998877655555543
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-19 Score=118.88 Aligned_cols=95 Identities=24% Similarity=0.380 Sum_probs=81.3
Q ss_pred EEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhhccCH
Q psy8370 86 LDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD 165 (256)
Q Consensus 86 LDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~ 165 (256)
||+|||+|..+..+++.+..+|+++|+++.+++.++++.... .+ .+...|+.+++.+++ +||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~--~~-~~~~~d~~~l~~~~~--sfD~v~~~~~~~~~-- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE--GV-SFRQGDAEDLPFPDN--SFDVVFSNSVLHHL-- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS--TE-EEEESBTTSSSS-TT---EEEEEEESHGGGS--
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc--Cc-hheeehHHhCccccc--cccccccccceeec--
Confidence 899999999999998884559999999999999999987653 34 589999999987766 99999999999999
Q ss_pred HHHHHHHHHHhhhcCCCcEEEE
Q psy8370 166 EDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 166 ~~~~~~l~~~~~~LkpgG~l~i 187 (256)
++..++++++.|+|||||.+++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 6778999999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >KOG3178|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=137.25 Aligned_cols=211 Identities=28% Similarity=0.401 Sum_probs=169.2
Q ss_pred ccchhhhhhhhccCCCCcccc-cccCCCCccc---cchhhhHHHHHHHHhcc-CC----CCCCCeEEEEcCCCCHhHHHH
Q psy8370 29 NRSHYSEVTEYYSNVPPTIDG-MLNGYSSISD---LDIQTSNQFLSSLYCQK-KS----DPGKTRVLDVGAGIGRISKYL 99 (256)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~-~~----~~~~~~vLDiG~G~G~~~~~l 99 (256)
...||.++..+|...+.+.++ ++++|...+. .++..+..++..++... .+ ...-...+|+|+|.|+.+..+
T Consensus 116 ~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~l 195 (342)
T KOG3178|consen 116 TWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNL 195 (342)
T ss_pred hHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHH
Confidence 456788999999999999888 7899977655 67777777777766321 12 223478899999999999999
Q ss_pred HHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhc
Q psy8370 100 LAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQIL 179 (256)
Q Consensus 100 ~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~L 179 (256)
+. .++.+-+++.+...+..++..+. .+ + ..+.+|..+- .+ .-|+|++.+++||+++++..++|++|+..|
T Consensus 196 l~-~fp~ik~infdlp~v~~~a~~~~-~g--V-~~v~gdmfq~-~P----~~daI~mkWiLhdwtDedcvkiLknC~~sL 265 (342)
T KOG3178|consen 196 LS-KYPHIKGINFDLPFVLAAAPYLA-PG--V-EHVAGDMFQD-TP----KGDAIWMKWILHDWTDEDCVKILKNCKKSL 265 (342)
T ss_pred HH-hCCCCceeecCHHHHHhhhhhhc-CC--c-ceeccccccc-CC----CcCeEEEEeecccCChHHHHHHHHHHHHhC
Confidence 88 66689999999988888877764 32 5 6677777655 22 348999999999999999999999999999
Q ss_pred CCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCcceeeeEEEeccCCC
Q psy8370 180 NKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALKPNKD 250 (256)
Q Consensus 180 kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 250 (256)
+|||.+++.++..+. ....+...+.+.+..+-+...+.+.|.+....+.+...|...|+++++++++..+
T Consensus 266 ~~~GkIiv~E~V~p~-e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~~~ 335 (342)
T KOG3178|consen 266 PPGGKIIVVENVTPE-EDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALTAYSY 335 (342)
T ss_pred CCCCEEEEEeccCCC-CCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEeccCcc
Confidence 999999999987776 2224444567777888888888888999998888999999999999999887643
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-18 Score=133.27 Aligned_cols=141 Identities=20% Similarity=0.242 Sum_probs=109.3
Q ss_pred CeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 83 TRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 83 ~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
++|||||||+|..+..+++... .+++|+|+|+.+++.+++++...+ .++ .+...|+...+. .+ +||+|++..+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i-~~~~~d~~~~~~-~~--~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRI-RIFYRDSAKDPF-PD--TYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcce-EEEecccccCCC-CC--CCCEeehHHH
Confidence 4799999999999999887653 389999999999999999987644 356 888888865533 23 7999999999
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
++|++ +...++++++++|+|||.+++.+................+..+..++.+++.++||++++...
T Consensus 77 l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 77 IHHIK--DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred HHhCC--CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 99995 456899999999999999999875432211111111223356889999999999999987664
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-18 Score=130.20 Aligned_cols=154 Identities=14% Similarity=0.089 Sum_probs=111.6
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-------------cCCCcce
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK-------------DCDKLDK 133 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------~~~~i~~ 133 (256)
.++.+.+ ......++.+|||+|||.|..+.+|+.+|+ +|+|||+|+.+++.+...... ...++ .
T Consensus 24 ~~L~~~~-~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v-~ 100 (218)
T PRK13255 24 PLLQKYW-PALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEI-T 100 (218)
T ss_pred HHHHHHH-HhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCce-E
Confidence 3455554 222345678999999999999999999998 899999999999986432110 11356 7
Q ss_pred EEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHH
Q psy8370 134 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQF 213 (256)
Q Consensus 134 ~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (256)
+.++|+.++.+... +.||.|+...++++++++.+..+++.+.++|+|||.+++......... . ....+..+.+++
T Consensus 101 ~~~~D~~~l~~~~~-~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~--~--~gPp~~~~~~el 175 (218)
T PRK13255 101 IYCGDFFALTAADL-ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE--L--AGPPFSVSDEEV 175 (218)
T ss_pred EEECcccCCCcccC-CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc--C--CCCCCCCCHHHH
Confidence 88999988865432 379999999999999999999999999999999997555332222111 1 122356789999
Q ss_pred HHHHHhcCCcEEEeee
Q psy8370 214 CLLFSKANLKCVKSEK 229 (256)
Q Consensus 214 ~~~l~~~gf~~~~~~~ 229 (256)
.+++.. +|++.....
T Consensus 176 ~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 176 EALYAG-CFEIELLER 190 (218)
T ss_pred HHHhcC-CceEEEeee
Confidence 999853 366665443
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-18 Score=133.46 Aligned_cols=143 Identities=15% Similarity=0.188 Sum_probs=111.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH---FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
.++.+|||+|||+|..+..++... ..+++|+|+|+.|++.|++++...+ .++ .++.+|+.+.+.. .+|+|
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~----~~d~v 126 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPV-EILCNDIRHVEIK----NASMV 126 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCe-EEEECChhhCCCC----CCCEE
Confidence 467899999999999999887753 2389999999999999999987643 356 8899999877642 47999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc---c----------cCC-------------CCceee
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE---Y----------DDE-------------DSSVVR 208 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---~----------~~~-------------~~~~~~ 208 (256)
++..+++++++++...++++++++|+|||.+++.+......... . ... ......
T Consensus 127 ~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 206 (239)
T TIGR00740 127 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTD 206 (239)
T ss_pred eeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence 99999999988778899999999999999999987644322110 0 000 011235
Q ss_pred CHHHHHHHHHhcCCcEEEe
Q psy8370 209 SLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 209 ~~~~~~~~l~~~gf~~~~~ 227 (256)
+.+++.++++++||..++.
T Consensus 207 s~~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 207 SIETHKARLKNVGFSHVEL 225 (239)
T ss_pred CHHHHHHHHHHcCCchHHH
Confidence 8899999999999986543
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=132.22 Aligned_cols=139 Identities=14% Similarity=0.218 Sum_probs=105.5
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
...+..+|||+|||+|.++..++..+. +++++|+|+.|++.++++.. .. .++.+|+..++..+. +||+|+++
T Consensus 39 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~----~~-~~~~~d~~~~~~~~~--~fD~V~s~ 110 (251)
T PRK10258 39 PQRKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA----AD-HYLAGDIESLPLATA--TFDLAWSN 110 (251)
T ss_pred CccCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC----CC-CEEEcCcccCcCCCC--cEEEEEEC
Confidence 344578999999999999999877665 89999999999999988742 23 678899988776555 89999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc------cccC-CCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------EYDD-EDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
.++++.+ +...++.++.++|+|||.++++......... .... ....-..+.+++..++...|+....
T Consensus 111 ~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 184 (251)
T PRK10258 111 LAVQWCG--NLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQHHI 184 (251)
T ss_pred chhhhcC--CHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCceeee
Confidence 9999884 4568999999999999999998644322111 0011 1112235788999999888876543
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-17 Score=136.82 Aligned_cols=192 Identities=13% Similarity=0.130 Sum_probs=128.1
Q ss_pred cCCccchhhhhhhhccCCCCcccccccCCCCccccchhhhH-HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC
Q psy8370 26 KDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSN-QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF 104 (256)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~ 104 (256)
+.....+|+...++|.........+..+|.. ....+..+. ..+..+. +.....++.+|||||||+|.++..++....
T Consensus 113 ~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~-~~~~L~~Aq~~k~~~l~-~~l~l~~g~rVLDIGcG~G~~a~~la~~~g 190 (383)
T PRK11705 113 WIVGKEHYDLGNDLFEAMLDPRMQYSCGYWK-DADTLEEAQEAKLDLIC-RKLQLKPGMRVLDIGCGWGGLARYAAEHYG 190 (383)
T ss_pred HHhhhhhcCCcHHHHHHhcCCCCcccccccC-CCCCHHHHHHHHHHHHH-HHhCCCCCCEEEEeCCCccHHHHHHHHHCC
Confidence 3345677887777777644332112222221 112233333 3334344 444667889999999999999999887643
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcE
Q psy8370 105 DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGI 184 (256)
Q Consensus 105 ~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 184 (256)
.+|+|+|+|+.+++.++++... ..+ .+...|+.+. .+ +||.|++..+++|++......+++++.++|||||.
T Consensus 191 ~~V~giDlS~~~l~~A~~~~~~--l~v-~~~~~D~~~l---~~--~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~ 262 (383)
T PRK11705 191 VSVVGVTISAEQQKLAQERCAG--LPV-EIRLQDYRDL---NG--QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGL 262 (383)
T ss_pred CEEEEEeCCHHHHHHHHHHhcc--CeE-EEEECchhhc---CC--CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcE
Confidence 3899999999999999998753 245 7777787654 23 79999999999999877778999999999999999
Q ss_pred EEEEecccCCCCccccC------CCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 185 IIIKDNVASGVKNEYDD------EDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 185 l~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
+++.............. .......+..++...++ .||.+.+..
T Consensus 263 lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~ 311 (383)
T PRK11705 263 FLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWH 311 (383)
T ss_pred EEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEe
Confidence 99976433322110000 01122346777777765 589887654
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=135.02 Aligned_cols=145 Identities=17% Similarity=0.149 Sum_probs=109.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.++.+|||||||+|.++..+++.. ..+++++|+|+.|++.++++... .++ .++.+|+.+.+...+ +||+|++..
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~--~~i-~~i~gD~e~lp~~~~--sFDvVIs~~ 186 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KEC-KIIEGDAEDLPFPTD--YADRYVSAG 186 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc--cCC-eEEeccHHhCCCCCC--ceeEEEEcC
Confidence 456899999999999998887653 34899999999999999987643 356 889999988776555 899999999
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-cccCCCCceeeCHHHHHHHHHhcCCcEEEeeeec
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-EYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVT 231 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~ 231 (256)
+++++++. ..++++++++|+|||.+++.+........ ...........+.+++.++++++||+.++.....
T Consensus 187 ~L~~~~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~ 258 (340)
T PLN02490 187 SIEYWPDP--QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIG 258 (340)
T ss_pred hhhhCCCH--HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcC
Confidence 99999644 57999999999999999886533221100 0000000112478999999999999998876543
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-17 Score=127.26 Aligned_cols=144 Identities=15% Similarity=0.148 Sum_probs=110.9
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
..++.+|||+|||+|.++..++..+. +++|+|+|+.|++.++++....+ .++ .+..+|+.+.+ . +||+|++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i-~~~~~d~~~~~---~--~fD~ii~ 125 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNV-EFEVNDLLSLC---G--EFDIVVC 125 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCce-EEEECChhhCC---C--CcCEEEE
Confidence 45688999999999999999987765 89999999999999999987554 256 88899987764 4 7999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCC--------CccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV--------KNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
..+++|++.++...+++++.+.+++++.+.+........ .............+.+++.++++++||+++...
T Consensus 126 ~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 126 MDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREG 205 (219)
T ss_pred hhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeee
Confidence 999999987778889999999999877666542211000 000011123445799999999999999998765
Q ss_pred e
Q psy8370 229 K 229 (256)
Q Consensus 229 ~ 229 (256)
.
T Consensus 206 ~ 206 (219)
T TIGR02021 206 L 206 (219)
T ss_pred c
Confidence 3
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.7e-18 Score=123.16 Aligned_cols=107 Identities=30% Similarity=0.380 Sum_probs=89.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHh-c-CCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCC-CCCCceeEEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAK-H-FDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPE-DLNIKYDVIW 155 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~-~~~~~~D~V~ 155 (256)
.++.+|||+|||+|.++..++.. + ..+++|+|+|+.|++.|++++...+ .++ ++.++|+.+++.. .. .||+|+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni-~~~~~d~~~l~~~~~~--~~D~I~ 78 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNI-EFIQGDIEDLPQELEE--KFDIII 78 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTE-EEEESBTTCGCGCSST--TEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccccc-ceEEeehhccccccCC--CeeEEE
Confidence 46789999999999999999843 3 2389999999999999999988766 357 9999999996521 13 799999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
+..++++++ +...+++++.+.|+++|.+++.+..
T Consensus 79 ~~~~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFP--DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTS--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhcc--CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999995 4568999999999999999998654
|
... |
| >KOG1540|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.8e-18 Score=127.36 Aligned_cols=155 Identities=17% Similarity=0.224 Sum_probs=119.0
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC-------CeEEEEeCCHHHHHHHHHHHHhcC----CCcceEE
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF-------DKIDLLEQSSKFIEQAKEEILKDC----DKLDKCY 135 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-------~~v~~vD~s~~~~~~a~~~~~~~~----~~i~~~~ 135 (256)
++.........+..++.++||++||||..+..+++... .+|+++|+|+.|+..++++....+ ..+ .++
T Consensus 86 RlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~-~w~ 164 (296)
T KOG1540|consen 86 RLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRV-EWV 164 (296)
T ss_pred HHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCce-EEE
Confidence 44454444556778889999999999999998876531 489999999999999999875433 236 899
Q ss_pred EccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-----------cccC---
Q psy8370 136 NVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-----------EYDD--- 201 (256)
Q Consensus 136 ~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----------~~~~--- 201 (256)
++|+++++++++ +||..++.+.+.+.+ ++++.+++++|+|||||.|.+.+........ .+..
T Consensus 165 ~~dAE~LpFdd~--s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~ 240 (296)
T KOG1540|consen 165 EGDAEDLPFDDD--SFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGE 240 (296)
T ss_pred eCCcccCCCCCC--cceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhH
Confidence 999999998877 999999999999995 4569999999999999999998765544211 0000
Q ss_pred ----CCCce---------eeCHHHHHHHHHhcCCcEEE
Q psy8370 202 ----EDSSV---------VRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 202 ----~~~~~---------~~~~~~~~~~l~~~gf~~~~ 226 (256)
...++ ..+.+++..+.+++||....
T Consensus 241 ~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 241 IIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 00011 12678999999999998875
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-18 Score=116.82 Aligned_cols=96 Identities=23% Similarity=0.395 Sum_probs=81.6
Q ss_pred EEEEcCCCCHhHHHHHHhc---C-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec-hh
Q psy8370 85 VLDVGAGIGRISKYLLAKH---F-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ-WV 159 (256)
Q Consensus 85 vLDiG~G~G~~~~~l~~~~---~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~-~~ 159 (256)
|||+|||+|..+..++... . .+++|+|+|+.|++.++++....+.++ ++++.|+.+++.... +||+|++. .+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~-~~~~~D~~~l~~~~~--~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKV-RFVQADARDLPFSDG--KFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTS-EEEESCTTCHHHHSS--SEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCce-EEEECCHhHCcccCC--CeeEEEEcCCc
Confidence 7999999999999998764 2 499999999999999999987765577 999999999876555 89999995 55
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCc
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNG 183 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG 183 (256)
++|+++++..++++++.++|+|||
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999998
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-17 Score=131.81 Aligned_cols=140 Identities=15% Similarity=0.131 Sum_probs=101.6
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc------CCCcceEEEccccccCCCCCCCceeEE
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD------CDKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++.... ..++ .+...|+.++ .+ +||+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~-~f~~~Dl~~l---~~--~fD~V 216 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLP-KFEANDLESL---SG--KYDTV 216 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccce-EEEEcchhhc---CC--CcCEE
Confidence 568999999999999999988876 8999999999999999987653 1234 6777887554 23 79999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-------cccC---CCCceeeCHHHHHHHHHhcCCcE
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EYDD---EDSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------~~~~---~~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
+|..+++|++++....+++.+.+ +.++|.++ .......... .+.. ....+.++.+++.++++++||++
T Consensus 217 v~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI-s~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v 294 (315)
T PLN02585 217 TCLDVLIHYPQDKADGMIAHLAS-LAEKRLII-SFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKV 294 (315)
T ss_pred EEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE-EeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEE
Confidence 99999999987766677877775 45555544 3322111100 0111 11234458999999999999998
Q ss_pred EEeee
Q psy8370 225 VKSEK 229 (256)
Q Consensus 225 ~~~~~ 229 (256)
...+.
T Consensus 295 ~~~~~ 299 (315)
T PLN02585 295 ARREM 299 (315)
T ss_pred EEEEE
Confidence 86553
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=131.71 Aligned_cols=147 Identities=16% Similarity=0.136 Sum_probs=111.0
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHh-cCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
...++.+|||+|||+|..+..++.. +.. +|+++|+++.+++.++++....+ .++ .+..+|+.+++...+ +||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v-~~~~~d~~~l~~~~~--~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNV-EFRLGEIEALPVADN--SVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCE-EEEEcchhhCCCCCC--ceeEE
Confidence 4567899999999999988776654 332 79999999999999999887655 356 888999988765544 89999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc-cc------CCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-YD------DEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
+++.++++.+ +...++++++++|||||.+++.+......... .. .....-..+..++.++++++||..+..
T Consensus 151 i~~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 151 ISNCVINLSP--DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred EEcCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEE
Confidence 9999999885 34579999999999999999986543322110 00 000111247789999999999998765
Q ss_pred ee
Q psy8370 228 EK 229 (256)
Q Consensus 228 ~~ 229 (256)
..
T Consensus 229 ~~ 230 (272)
T PRK11873 229 QP 230 (272)
T ss_pred Ee
Confidence 43
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-17 Score=140.68 Aligned_cols=144 Identities=17% Similarity=0.282 Sum_probs=112.4
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccc--cCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD--FKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~--~~~~~~~~~~D~V~ 155 (256)
...++.+|||||||+|.++..++..+. +|+|+|+++.|++.+++.... ..++ .+++.|+.. ++.+.+ +||+|+
T Consensus 34 ~~~~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~~~~-~~~i-~~~~~d~~~~~~~~~~~--~fD~I~ 108 (475)
T PLN02336 34 PPYEGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESINGH-YKNV-KFMCADVTSPDLNISDG--SVDLIF 108 (475)
T ss_pred CccCCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHhcc-CCce-EEEEecccccccCCCCC--CEEEEe
Confidence 345667999999999999999987754 899999999999987654322 2356 788899864 333334 899999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
+..+++|+++++...+++++++.|+|||.+++.+..................++...+.+++.++||....
T Consensus 109 ~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 109 SNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDED 179 (475)
T ss_pred hhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCC
Confidence 99999999887788999999999999999999876544332222233445567788999999999988764
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.2e-17 Score=125.94 Aligned_cols=144 Identities=17% Similarity=0.163 Sum_probs=105.3
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
..++.+|||+|||+|.++..++..+. .|+|+|+|+.+++.+++++...+. ++ .+..+|+.. ... +||+|++
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i-~~~~~d~~~---~~~--~fD~v~~ 133 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNI-TFEVGDLES---LLG--RFDTVVC 133 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCc-EEEEcCchh---ccC--CcCEEEE
Confidence 35678999999999999999988776 799999999999999998876542 56 788888432 223 7999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCC-----CCcc---ccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG-----VKNE---YDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
..+++|++.+....+++.+.+.+++++.+.+....... .... ..........+..++.++++.+||++....
T Consensus 134 ~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 213 (230)
T PRK07580 134 LDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTE 213 (230)
T ss_pred cchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeee
Confidence 99999988888888999999877655544432110000 0000 111122344688999999999999998775
Q ss_pred e
Q psy8370 229 K 229 (256)
Q Consensus 229 ~ 229 (256)
.
T Consensus 214 ~ 214 (230)
T PRK07580 214 R 214 (230)
T ss_pred e
Confidence 4
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.9e-17 Score=125.77 Aligned_cols=146 Identities=20% Similarity=0.208 Sum_probs=111.5
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...++.+|||+|||+|..+..++..+.. +++++|+++.+++.++++.. ...++ .+..+|+.+.+...+ .||+|+
T Consensus 36 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i-~~~~~d~~~~~~~~~--~~D~i~ 111 (223)
T TIGR01934 36 GVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNI-EFIQADAEALPFEDN--SFDAVT 111 (223)
T ss_pred ccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCc-eEEecchhcCCCCCC--cEEEEE
Confidence 3457889999999999999999887763 89999999999999998876 33456 888999988765444 799999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc------------------cccCCCC---------ceee
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------------------EYDDEDS---------SVVR 208 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------------------~~~~~~~---------~~~~ 208 (256)
+..++++.+ +...+++.+.+.|+|||.+++.+........ ....... ....
T Consensus 112 ~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (223)
T TIGR01934 112 IAFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFP 189 (223)
T ss_pred EeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCC
Confidence 999999884 4568999999999999999987654332210 0000000 1124
Q ss_pred CHHHHHHHHHhcCCcEEEeee
Q psy8370 209 SLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 209 ~~~~~~~~l~~~gf~~~~~~~ 229 (256)
+.+++..+++++||+.+....
T Consensus 190 ~~~~~~~~l~~aGf~~~~~~~ 210 (223)
T TIGR01934 190 SQEELAAMLKEAGFEEVRYRS 210 (223)
T ss_pred CHHHHHHHHHHcCCccceeee
Confidence 778899999999999877653
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >KOG2361|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-17 Score=122.12 Aligned_cols=201 Identities=16% Similarity=0.180 Sum_probs=133.3
Q ss_pred hhhhhhhhccCCCCcccccccCCCCccccchhhhHHHHHHHHhccCCCCC--CCeEEEEcCCCCHhHHHHHHhcCC---e
Q psy8370 32 HYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPG--KTRVLDVGAGIGRISKYLLAKHFD---K 106 (256)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~vLDiG~G~G~~~~~l~~~~~~---~ 106 (256)
+-.....||+..+...+..+ -.+.....+-...+. .... ..+|||+|||.|.....+++-... .
T Consensus 31 y~~~~~k~wD~fy~~~~~rF-------fkdR~wL~~Efpel~----~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~ 99 (264)
T KOG2361|consen 31 YEREASKYWDTFYKIHENRF-------FKDRNWLLREFPELL----PVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLK 99 (264)
T ss_pred hhcchhhhhhhhhhhccccc-------cchhHHHHHhhHHhh----CccccChhhheeeccCCCcccchhhhcCCCCCeE
Confidence 33466788888766543311 111222222233333 2222 238999999999999998776543 7
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC--CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcE
Q psy8370 107 IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK--PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGI 184 (256)
Q Consensus 107 v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~--~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 184 (256)
++++|.|+.+++..+++......++ .....|+.... .+...+++|+|++.+++..++++.....+++++++|||||.
T Consensus 100 v~acDfsp~Ai~~vk~~~~~~e~~~-~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~ 178 (264)
T KOG2361|consen 100 VYACDFSPRAIELVKKSSGYDESRV-EAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGS 178 (264)
T ss_pred EEEcCCChHHHHHHHhccccchhhh-cccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcE
Confidence 9999999999999988765433344 44455554332 12224699999999999999999999999999999999999
Q ss_pred EEEEecccCCCCc-------------cccC-CCCceeeCHHHHHHHHHhcCCcEEEeeeecC------CCCcceeeeEEE
Q psy8370 185 IIIKDNVASGVKN-------------EYDD-EDSSVVRSLPQFCLLFSKANLKCVKSEKVTG------MPKSLFKIYMFA 244 (256)
Q Consensus 185 l~i~~~~~~~~~~-------------~~~~-~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~------~~~~~~~~~~~~ 244 (256)
+++.+........ .... -...+.++.+++..++.++||..++...... -..+.|.+|+.+
T Consensus 179 llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~~rl~vNr~k~lkm~Rvwvq~ 258 (264)
T KOG2361|consen 179 LLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVDCRLLVNRKKQLKMYRVWVQA 258 (264)
T ss_pred EEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcccceeeeeeehhccCccceEEEEE
Confidence 9998654333221 0001 1123567999999999999998876543222 134566666654
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-17 Score=126.70 Aligned_cols=156 Identities=19% Similarity=0.164 Sum_probs=112.4
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh--c-----------CCCcceEE
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK--D-----------CDKLDKCY 135 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~-----------~~~i~~~~ 135 (256)
|.+++.. ....++.+||..|||.|..+.+|+++|+ +|+|+|+|+.+++.+.+.... . ..++ .++
T Consensus 26 L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i-~~~ 102 (218)
T PF05724_consen 26 LVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRI-TIY 102 (218)
T ss_dssp HHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSE-EEE
T ss_pred HHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCce-EEE
Confidence 4444422 3466778999999999999999999998 899999999999998543221 0 1245 788
Q ss_pred EccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHH
Q psy8370 136 NVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL 215 (256)
Q Consensus 136 ~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (256)
++|+.++.+... ++||+|+-..+++.++++.+.+..+.+.++|+|||.+++....... .......+..+.+++.+
T Consensus 103 ~gDfF~l~~~~~-g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~----~~~~GPPf~v~~~ev~~ 177 (218)
T PF05724_consen 103 CGDFFELPPEDV-GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQ----GEMEGPPFSVTEEEVRE 177 (218)
T ss_dssp ES-TTTGGGSCH-HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-C----SCSSSSS----HHHHHH
T ss_pred EcccccCChhhc-CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCC----cCCCCcCCCCCHHHHHH
Confidence 999998876543 5899999999999999999999999999999999995444322221 11225567789999999
Q ss_pred HHHhcCCcEEEeeeecCC
Q psy8370 216 LFSKANLKCVKSEKVTGM 233 (256)
Q Consensus 216 ~l~~~gf~~~~~~~~~~~ 233 (256)
++. .+|++...+.....
T Consensus 178 l~~-~~f~i~~l~~~~~~ 194 (218)
T PF05724_consen 178 LFG-PGFEIEELEEEDSI 194 (218)
T ss_dssp HHT-TTEEEEEEEEEE-T
T ss_pred Hhc-CCcEEEEEeccccc
Confidence 998 78998877654333
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.6e-17 Score=128.61 Aligned_cols=142 Identities=13% Similarity=0.213 Sum_probs=104.4
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
....++.+|||||||+|.++..++.... .+|+|+|+|+.|++.++++.. ++ .+..+|+..+.+. . +||+|+
T Consensus 27 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----~~-~~~~~d~~~~~~~-~--~fD~v~ 98 (258)
T PRK01683 27 VPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----DC-QFVEADIASWQPP-Q--ALDLIF 98 (258)
T ss_pred CCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----CC-eEEECchhccCCC-C--CccEEE
Confidence 3456789999999999999999987642 489999999999999988752 45 7889998876532 3 799999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc---------------ccc--CCCCceeeCHHHHHHHHH
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---------------EYD--DEDSSVVRSLPQFCLLFS 218 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------------~~~--~~~~~~~~~~~~~~~~l~ 218 (256)
++.++++++ +...+++++.++|+|||.+++.......... .+. ........+..++.+.+.
T Consensus 99 ~~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (258)
T PRK01683 99 ANASLQWLP--DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALA 176 (258)
T ss_pred EccChhhCC--CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHH
Confidence 999999995 4468999999999999999986322111000 000 000112246778889999
Q ss_pred hcCCcEEEee
Q psy8370 219 KANLKCVKSE 228 (256)
Q Consensus 219 ~~gf~~~~~~ 228 (256)
.+|+.+....
T Consensus 177 ~~g~~v~~~~ 186 (258)
T PRK01683 177 PAACRVDIWH 186 (258)
T ss_pred hCCCceeeee
Confidence 9998765433
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-16 Score=128.56 Aligned_cols=147 Identities=18% Similarity=0.237 Sum_probs=111.7
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCce
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
+.....+..+|||||||+|.++..++++.+. +++++|. +.+++.++++....+ .++ +++.+|+.+...+ .+
T Consensus 143 ~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv-~~~~~d~~~~~~~----~~ 216 (306)
T TIGR02716 143 EEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRM-RGIAVDIYKESYP----EA 216 (306)
T ss_pred HHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceE-EEEecCccCCCCC----CC
Confidence 4445677789999999999999999888653 8999997 789999999887654 457 8999998764332 36
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc-cc-------CC--CCc--eeeCHHHHHHHHHh
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-YD-------DE--DSS--VVRSLPQFCLLFSK 219 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~~-------~~--~~~--~~~~~~~~~~~l~~ 219 (256)
|+|++..++|+++++....+++++++.|+|||.+++.+......... .. .. ... -..+.+++.+++++
T Consensus 217 D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~ 296 (306)
T TIGR02716 217 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILES 296 (306)
T ss_pred CEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHH
Confidence 99999999999987777889999999999999999997644332110 00 00 000 12346899999999
Q ss_pred cCCcEEEe
Q psy8370 220 ANLKCVKS 227 (256)
Q Consensus 220 ~gf~~~~~ 227 (256)
+||+.+..
T Consensus 297 aGf~~v~~ 304 (306)
T TIGR02716 297 LGYKDVTM 304 (306)
T ss_pred cCCCeeEe
Confidence 99987653
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-16 Score=125.08 Aligned_cols=149 Identities=16% Similarity=0.168 Sum_probs=109.7
Q ss_pred CCccccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCc-ce
Q psy8370 55 SSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKL-DK 133 (256)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i-~~ 133 (256)
+...+.......+++.++. .++.+|||+|||+|.+++..+..|+.+++|+|++|.+++.++++.+.++... ..
T Consensus 142 GTG~HpTT~lcL~~Le~~~------~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~ 215 (300)
T COG2264 142 GTGTHPTTSLCLEALEKLL------KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQ 215 (300)
T ss_pred CCCCChhHHHHHHHHHHhh------cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhh
Confidence 3344555555567777777 5899999999999999999999999899999999999999999988765221 01
Q ss_pred EEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHH
Q psy8370 134 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQF 213 (256)
Q Consensus 134 ~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (256)
....+....+ .. ++||+|+++-..+ -+..+...+.+.++|||.++++. ....-.+.+
T Consensus 216 ~~~~~~~~~~-~~--~~~DvIVANILA~-----vl~~La~~~~~~lkpgg~lIlSG---------------Il~~q~~~V 272 (300)
T COG2264 216 AKGFLLLEVP-EN--GPFDVIVANILAE-----VLVELAPDIKRLLKPGGRLILSG---------------ILEDQAESV 272 (300)
T ss_pred cccccchhhc-cc--CcccEEEehhhHH-----HHHHHHHHHHHHcCCCceEEEEe---------------ehHhHHHHH
Confidence 2222222221 11 3799999986322 24578899999999999999963 222335778
Q ss_pred HHHHHhcCCcEEEeeeecC
Q psy8370 214 CLLFSKANLKCVKSEKVTG 232 (256)
Q Consensus 214 ~~~l~~~gf~~~~~~~~~~ 232 (256)
.+.+.++||.++.......
T Consensus 273 ~~a~~~~gf~v~~~~~~~e 291 (300)
T COG2264 273 AEAYEQAGFEVVEVLEREE 291 (300)
T ss_pred HHHHHhCCCeEeEEEecCC
Confidence 8899999999998775543
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.73 E-value=6e-16 Score=116.23 Aligned_cols=131 Identities=18% Similarity=0.154 Sum_probs=103.1
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.++.+|||+|||+|.++..++..+. +++++|+|+.+++.++++....+.++ .+..+|+.+.. .. +||+|+++..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~--~~--~fD~Vi~n~p 91 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGL-DVVMTDLFKGV--RG--KFDVILFNPP 91 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCce-EEEEccccccc--CC--cccEEEECCC
Confidence 4567899999999999999988776 89999999999999999987665556 78888876643 23 7999999876
Q ss_pred hhccCHH-------------------HHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhc
Q psy8370 160 LMFILDE-------------------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA 220 (256)
Q Consensus 160 l~~~~~~-------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (256)
+++.++. ....+++++.++|+|||.+++..... ....++...+++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~---------------~~~~~~~~~l~~~ 156 (179)
T TIGR00537 92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL---------------NGEPDTFDKLDER 156 (179)
T ss_pred CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc---------------CChHHHHHHHHhC
Confidence 6544321 24678999999999999999864221 1257788999999
Q ss_pred CCcEEEeeeec
Q psy8370 221 NLKCVKSEKVT 231 (256)
Q Consensus 221 gf~~~~~~~~~ 231 (256)
||+........
T Consensus 157 gf~~~~~~~~~ 167 (179)
T TIGR00537 157 GFRYEIVAERG 167 (179)
T ss_pred CCeEEEEEEee
Confidence 99988766443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-16 Score=122.36 Aligned_cols=147 Identities=20% Similarity=0.197 Sum_probs=106.4
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCc-ceEEEccccccCCCCCCCceeEEEe
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i-~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
..-.+++|||||||.|..+..++.+|++.|+|+|+++...-..+..-+-.+... .......+++++. .+ .||+|+|
T Consensus 112 ~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~--~FDtVF~ 188 (315)
T PF08003_consen 112 PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LG--AFDTVFS 188 (315)
T ss_pred CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cC--CcCEEEE
Confidence 355789999999999999999999999899999999876554333222222112 0333356677766 44 8999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-------cccCCCC-ceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EYDDEDS-SVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
..+++|..+ ....|++++..|+|||.+++.......... .+..... .+..+...+..+++++||..++..
T Consensus 189 MGVLYHrr~--Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v 266 (315)
T PF08003_consen 189 MGVLYHRRS--PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCV 266 (315)
T ss_pred eeehhccCC--HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEe
Confidence 999999954 458999999999999999987554333322 1222222 233589999999999999888765
Q ss_pred e
Q psy8370 229 K 229 (256)
Q Consensus 229 ~ 229 (256)
.
T Consensus 267 ~ 267 (315)
T PF08003_consen 267 D 267 (315)
T ss_pred c
Confidence 4
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-15 Score=116.13 Aligned_cols=106 Identities=21% Similarity=0.215 Sum_probs=86.2
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++.. .+ .+..+|+.+ +.... +||+|++.
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----~~-~~~~~d~~~-~~~~~--sfD~V~~~ 112 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----NI-NIIQGSLFD-PFKDN--FFDLVLTK 112 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----CC-cEEEeeccC-CCCCC--CEEEEEEC
Confidence 356789999999999999999776 23489999999999999988642 34 678888877 44444 89999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCC
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 194 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 194 (256)
.+++|++++.+.++++++.+++ ++.+++.+...+.
T Consensus 113 ~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 113 GVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred ChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 9999998888899999999997 5677777654443
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=7e-16 Score=120.19 Aligned_cols=147 Identities=22% Similarity=0.232 Sum_probs=111.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
..+.+|||+|||+|.++..++..+. .++++|+++.+++.++++....+. ++ .+...|+.+.+.... ++||+|++..
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~-~~~~~d~~~~~~~~~-~~~D~i~~~~ 120 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKI-EYRCTSVEDLAEKGA-KSFDVVTCME 120 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCce-EEEeCCHHHhhcCCC-CCccEEEehh
Confidence 4578999999999999999877766 799999999999999998876543 46 788888877765431 3899999999
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc------------cccC--CCCceeeCHHHHHHHHHhcCCcE
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------------EYDD--EDSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------------~~~~--~~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
++++.. +...+++.+.++|+|||.+++.......... .... .......+..++.++++++||++
T Consensus 121 ~l~~~~--~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i 198 (224)
T TIGR01983 121 VLEHVP--DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRV 198 (224)
T ss_pred HHHhCC--CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCee
Confidence 999995 4458999999999999999987543221000 0000 11112347889999999999999
Q ss_pred EEeeeec
Q psy8370 225 VKSEKVT 231 (256)
Q Consensus 225 ~~~~~~~ 231 (256)
++.....
T Consensus 199 ~~~~~~~ 205 (224)
T TIGR01983 199 KDVKGLV 205 (224)
T ss_pred eeeeeEE
Confidence 8876433
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.4e-16 Score=122.58 Aligned_cols=150 Identities=18% Similarity=0.171 Sum_probs=110.0
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCcee
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
......++.+|||+|||+|.++..++... ..+++++|+++.+++.++++......++ .+...|+...+.... .||
T Consensus 13 ~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~--~~D 89 (241)
T PRK08317 13 ELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNV-EFVRGDADGLPFPDG--SFD 89 (241)
T ss_pred HHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCce-EEEecccccCCCCCC--Cce
Confidence 33456788999999999999999987764 2389999999999999998844333456 888888877665544 899
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCC-cc-----cc------CCCCceeeCHHHHHHHHHhc
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK-NE-----YD------DEDSSVVRSLPQFCLLFSKA 220 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~-----~~------~~~~~~~~~~~~~~~~l~~~ 220 (256)
+|++..++++++ +...+++++.++|+|||.+++.+....... .. .. .....-..+..++..+++++
T Consensus 90 ~v~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 167 (241)
T PRK08317 90 AVRSDRVLQHLE--DPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREA 167 (241)
T ss_pred EEEEechhhccC--CHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHc
Confidence 999999999995 456899999999999999998764321100 00 00 00000113456789999999
Q ss_pred CCcEEEeee
Q psy8370 221 NLKCVKSEK 229 (256)
Q Consensus 221 gf~~~~~~~ 229 (256)
||..+....
T Consensus 168 Gf~~~~~~~ 176 (241)
T PRK08317 168 GLTDIEVEP 176 (241)
T ss_pred CCCceeEEE
Confidence 998876553
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.2e-16 Score=122.14 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=109.7
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
...++.+|||||||+|.++..++..+. +++++|+++.+++.+++++...+..+ .+...++.+.+.... +.||+|++.
T Consensus 45 ~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~fD~Ii~~ 121 (233)
T PRK05134 45 GGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKI-DYRQTTAEELAAEHP-GQFDVVTCM 121 (233)
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCce-EEEecCHHHhhhhcC-CCccEEEEh
Confidence 355688999999999999999887765 89999999999999998877654455 777788776652222 389999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc------------c--ccCCCCceeeCHHHHHHHHHhcCCc
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------------E--YDDEDSSVVRSLPQFCLLFSKANLK 223 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------------~--~~~~~~~~~~~~~~~~~~l~~~gf~ 223 (256)
.++++.+ +...+++.+.+.|+|||.+++.......... . ..........+..++.++++++||+
T Consensus 122 ~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 199 (233)
T PRK05134 122 EMLEHVP--DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLE 199 (233)
T ss_pred hHhhccC--CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCe
Confidence 9999995 3457899999999999999987543211100 0 0001112235788999999999999
Q ss_pred EEEee
Q psy8370 224 CVKSE 228 (256)
Q Consensus 224 ~~~~~ 228 (256)
++...
T Consensus 200 ~v~~~ 204 (233)
T PRK05134 200 VQDIT 204 (233)
T ss_pred Eeeee
Confidence 98764
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.2e-16 Score=121.27 Aligned_cols=146 Identities=15% Similarity=0.169 Sum_probs=111.1
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEE
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
..++.+|||+|||+|.++..++..+. .+++++|+++.+++.+++++...+ .++ .+...|+.+.+...+ .||+|
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~~--~~D~I 125 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNV-EFVQGDAEALPFPDN--SFDAV 125 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCe-EEEecccccCCCCCC--CccEE
Confidence 44678999999999999999988774 599999999999999999876532 346 888899887765444 89999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-----------c-------ccCCCC---------cee
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-----------E-------YDDEDS---------SVV 207 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----------~-------~~~~~~---------~~~ 207 (256)
++..++++.+ +...+++.+.+.|+|||.+++.+........ . ...... ...
T Consensus 126 ~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (239)
T PRK00216 126 TIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAF 203 (239)
T ss_pred EEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhC
Confidence 9999999884 4568999999999999999987654332210 0 000000 112
Q ss_pred eCHHHHHHHHHhcCCcEEEeee
Q psy8370 208 RSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 208 ~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
.+.+++.++++++||+.+....
T Consensus 204 ~~~~~~~~~l~~aGf~~~~~~~ 225 (239)
T PRK00216 204 PDQEELAAMLEEAGFERVRYRN 225 (239)
T ss_pred CCHHHHHHHHHhCCCceeeeee
Confidence 4678899999999999877653
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-15 Score=113.84 Aligned_cols=124 Identities=22% Similarity=0.231 Sum_probs=98.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
.+++.+|||+|||+|..+..++... ..+|+++|+++.+++.++++.+..+. ++ .++.+|+.+... .. +||+|++
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i-~~~~~d~~~~~~-~~--~fDlV~~ 118 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNV-TVVHGRAEEFGQ-EE--KFDVVTS 118 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCE-EEEeccHhhCCC-CC--CccEEEE
Confidence 3457999999999999999887643 23999999999999999999887663 46 999999988765 44 8999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
... ..+..+++.+++.|+|||.+++.... ....++..+.+..|+.+....
T Consensus 119 ~~~------~~~~~~l~~~~~~LkpGG~lv~~~~~----------------~~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 119 RAV------ASLSDLVELCLPLLKPGGRFLALKGR----------------DPEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred ccc------cCHHHHHHHHHHhcCCCeEEEEEeCC----------------ChHHHHHHHHHhcCceEeeeE
Confidence 752 23457999999999999999986311 124566777788899877654
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-17 Score=122.81 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=112.1
Q ss_pred HHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC
Q psy8370 68 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL 147 (256)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~ 147 (256)
++.+.+ ......+-.++||+|||||..+..+- .....++|||+|+.|++.|.++--. ..+.+.+...+.....
T Consensus 113 ~l~emI-~~~~~g~F~~~lDLGCGTGL~G~~lR-~~a~~ltGvDiS~nMl~kA~eKg~Y-----D~L~~Aea~~Fl~~~~ 185 (287)
T COG4976 113 LLAEMI-GKADLGPFRRMLDLGCGTGLTGEALR-DMADRLTGVDISENMLAKAHEKGLY-----DTLYVAEAVLFLEDLT 185 (287)
T ss_pred HHHHHH-HhccCCccceeeecccCcCcccHhHH-HHHhhccCCchhHHHHHHHHhccch-----HHHHHHHHHHHhhhcc
Confidence 344444 33445557899999999999999984 4445899999999999999886321 1345555554443122
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
...||+|++..++.++ ..+..++-.+...|+|||.|.++.-.........-..+..+.++...++..+...||+++..
T Consensus 186 ~er~DLi~AaDVl~Yl--G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 186 QERFDLIVAADVLPYL--GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred CCcccchhhhhHHHhh--cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEe
Confidence 2489999999999999 67778999999999999999998544433322122223345578899999999999999987
Q ss_pred eee
Q psy8370 228 EKV 230 (256)
Q Consensus 228 ~~~ 230 (256)
+..
T Consensus 264 ~~t 266 (287)
T COG4976 264 EDT 266 (287)
T ss_pred ecc
Confidence 653
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-18 Score=116.08 Aligned_cols=97 Identities=25% Similarity=0.380 Sum_probs=63.0
Q ss_pred EEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEEEechhhhcc
Q psy8370 86 LDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFI 163 (256)
Q Consensus 86 LDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~ 163 (256)
||||||+|.++..+++... .+++++|+|+.|++.+++++..... .. .....+..+.......++||+|++..++||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNF-ERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---E-EEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcce-eEEEeecCChhhcccccccceehhhhhHhhh
Confidence 7999999999999988832 2999999999999999888877542 22 3333333333221111389999999999999
Q ss_pred CHHHHHHHHHHHhhhcCCCcEE
Q psy8370 164 LDEDIIKFLNLCKQILNKNGII 185 (256)
Q Consensus 164 ~~~~~~~~l~~~~~~LkpgG~l 185 (256)
++...+++++++.|+|||.|
T Consensus 80 --~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 --EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred --hhHHHHHHHHHHHcCCCCCC
Confidence 66779999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-16 Score=121.66 Aligned_cols=141 Identities=12% Similarity=0.169 Sum_probs=100.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHh----cC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAK----HF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~----~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
.++.+|||+|||+|.++..++.. +. .+|+|+|+|+.|++.++++.... ++ .+...+...++.... +||+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~--~~-~~~~~~~~~l~~~~~--~fD~V 133 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP--GV-TFRQAVSDELVAEGE--RFDVV 133 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC--CC-eEEEEecccccccCC--CccEE
Confidence 56789999999999998887642 33 28999999999999998875432 34 566666655544334 89999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc---------c-------ccCCC-CceeeCHHHHHHHH
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---------E-------YDDED-SSVVRSLPQFCLLF 217 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~-------~~~~~-~~~~~~~~~~~~~l 217 (256)
+++.++||+++++...++++++++++ |.+++.+........ . .+... ....++.+++.+++
T Consensus 134 ~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll 211 (232)
T PRK06202 134 TSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALA 211 (232)
T ss_pred EECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHh
Confidence 99999999988777889999999998 555555433321100 0 00000 11236899999999
Q ss_pred HhcCCcEEEee
Q psy8370 218 SKANLKCVKSE 228 (256)
Q Consensus 218 ~~~gf~~~~~~ 228 (256)
++ ||++....
T Consensus 212 ~~-Gf~~~~~~ 221 (232)
T PRK06202 212 PQ-GWRVERQW 221 (232)
T ss_pred hC-CCeEEecc
Confidence 99 99987644
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.1e-17 Score=120.27 Aligned_cols=157 Identities=16% Similarity=0.216 Sum_probs=115.6
Q ss_pred hhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccc
Q psy8370 63 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 141 (256)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~ 141 (256)
+.+++++.++ ......+|.|+|||+|..+..|+++-+. .++|+|.|+.|++.|+.+.. +. .|..+|+.+
T Consensus 17 RPa~dLla~V-----p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp----~~-~f~~aDl~~ 86 (257)
T COG4106 17 RPARDLLARV-----PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP----DA-TFEEADLRT 86 (257)
T ss_pred CcHHHHHhhC-----CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC----CC-ceecccHhh
Confidence 3444555444 4677899999999999999999888543 99999999999999987753 45 899999999
Q ss_pred cCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc---------------cccC--CCC
Q psy8370 142 FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---------------EYDD--EDS 204 (256)
Q Consensus 142 ~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------------~~~~--~~~ 204 (256)
+.+... .|+++++.++++++ +...++..+...|.|||.+.+..+....... .+.. ...
T Consensus 87 w~p~~~---~dllfaNAvlqWlp--dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r 161 (257)
T COG4106 87 WKPEQP---TDLLFANAVLQWLP--DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTR 161 (257)
T ss_pred cCCCCc---cchhhhhhhhhhcc--ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCcccccc
Confidence 987654 89999999999995 5568999999999999999997432221110 0111 011
Q ss_pred ceeeCHHHHHHHHHhcCCcEEEeeeecCCC
Q psy8370 205 SVVRSLPQFCLLFSKANLKCVKSEKVTGMP 234 (256)
Q Consensus 205 ~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~ 234 (256)
.-..++..+-+++...+-++......+..+
T Consensus 162 ~~v~s~a~Yy~lLa~~~~rvDiW~T~Y~h~ 191 (257)
T COG4106 162 APLPSPAAYYELLAPLACRVDIWHTTYYHQ 191 (257)
T ss_pred CCCCCHHHHHHHhCcccceeeeeeeecccc
Confidence 122477778888887777776655544443
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-16 Score=124.06 Aligned_cols=139 Identities=18% Similarity=0.237 Sum_probs=104.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
..+.+|||+|||+|.++..++..+.. .++++|+++.+++.++++... ++ .++.+|+.+.+.... +||+|++..
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~---~~-~~~~~d~~~~~~~~~--~fD~vi~~~ 106 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE---NV-QFICGDAEKLPLEDS--SFDLIVSNL 106 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC---CC-eEEecchhhCCCCCC--ceeEEEEhh
Confidence 34579999999999999999887653 789999999999999887642 56 888999988776555 899999999
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccc--cCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY--DDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
++++.. +...+++++.++|+|||.+++............ .........+..++.+++..+ |.....
T Consensus 107 ~l~~~~--~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~ 174 (240)
T TIGR02072 107 ALQWCD--DLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTL 174 (240)
T ss_pred hhhhcc--CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEE
Confidence 999994 456899999999999999999754332211100 000112235778888888887 766543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.2e-16 Score=117.36 Aligned_cols=141 Identities=12% Similarity=0.061 Sum_probs=109.5
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-------------hcCCCcceEEEccccccCCC
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEIL-------------KDCDKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-------------~~~~~i~~~~~~d~~~~~~~ 145 (256)
..++.+||+.|||.|..+.+|+.+|+ .|+|+|+|+.+++.+.+... ..+.++ .+.++|+.++.+.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i-~~~~gD~f~l~~~ 118 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDI-EIYVADIFNLPKI 118 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCce-EEEEccCcCCCcc
Confidence 44678999999999999999999999 79999999999999866321 112467 8999999998652
Q ss_pred C-CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcE
Q psy8370 146 D-LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 146 ~-~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
. ..+.||+|+-..++++++++.+.+..+.+.++|+|||.+++....... ......+..+.+++++++.. +|.+
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~-----~~~GPPf~v~~~e~~~lf~~-~~~i 192 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDK-----KSQTPPYSVTQAELIKNFSA-KIKF 192 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCC-----CCCCCCCcCCHHHHHHhccC-CceE
Confidence 2 124799999999999999999999999999999999998887532211 11344556788999999864 3444
Q ss_pred EEe
Q psy8370 225 VKS 227 (256)
Q Consensus 225 ~~~ 227 (256)
...
T Consensus 193 ~~l 195 (226)
T PRK13256 193 ELI 195 (226)
T ss_pred EEe
Confidence 433
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=114.38 Aligned_cols=123 Identities=20% Similarity=0.221 Sum_probs=93.7
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
++.+|||+|||+|.++..++..+. .+|+++|+|+.|++.++++.+..+ .++ .++.+|+.++.. .. +||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i-~~i~~d~~~~~~-~~--~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNV-EIVNGRAEDFQH-EE--QFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCe-EEEecchhhccc-cC--CccEEEehh
Confidence 478999999999999999876553 389999999999999998887665 357 899999988643 33 799999976
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHh---cCCcEEEeee
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK---ANLKCVKSEK 229 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~gf~~~~~~~ 229 (256)
++++ ..+++.+++.|+|||.+++.... ....++..+.+. .||+.+....
T Consensus 118 -~~~~-----~~~~~~~~~~LkpgG~lvi~~~~----------------~~~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 118 -LASL-----NVLLELTLNLLKVGGYFLAYKGK----------------KYLDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred -hhCH-----HHHHHHHHHhcCCCCEEEEEcCC----------------CcHHHHHHHHHhhhhcCceEeeccc
Confidence 3333 46788899999999999985210 123455555554 7999887663
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-15 Score=115.25 Aligned_cols=152 Identities=10% Similarity=0.014 Sum_probs=105.1
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC---CCCCCCcee
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK---PEDLNIKYD 152 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~---~~~~~~~~D 152 (256)
....++.+|||+|||+|.++..++.... ..|+++|+++.|++.+.++.... .++ .++.+|+.+.. .... +||
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-~nv-~~i~~D~~~~~~~~~l~~--~~D 143 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-KNI-IPILADARKPERYAHVVE--KVD 143 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-CCc-EEEECCCCCcchhhhccc--cCC
Confidence 4677889999999999999999977642 38999999999999877766543 356 78888886521 1123 699
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecC
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTG 232 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~ 232 (256)
+|++... .+.....++++++++|||||.++++-....... . .... +..++..+.++++||+++.......
T Consensus 144 ~i~~d~~----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~---~--~~~~-~~~~~~~~~l~~aGF~~i~~~~l~p 213 (226)
T PRK04266 144 VIYQDVA----QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDV---T--KDPK-EIFKEEIRKLEEGGFEILEVVDLEP 213 (226)
T ss_pred EEEECCC----ChhHHHHHHHHHHHhcCCCcEEEEEEecccccC---c--CCHH-HHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 9996522 112334578999999999999999522211111 0 1111 1124456899999999998887766
Q ss_pred CCCcceeeeE
Q psy8370 233 MPKSLFKIYM 242 (256)
Q Consensus 233 ~~~~~~~~~~ 242 (256)
+..+.|.+..
T Consensus 214 ~~~~h~~~v~ 223 (226)
T PRK04266 214 YHKDHAAVVA 223 (226)
T ss_pred CcCCeEEEEE
Confidence 6666666553
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-16 Score=124.50 Aligned_cols=145 Identities=14% Similarity=0.142 Sum_probs=103.4
Q ss_pred CccccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEE
Q psy8370 56 SISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY 135 (256)
Q Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~ 135 (256)
...+...+-..+++.++. .++.+|||+|||+|.++...+..|+.+|+++|+++.+++.|+++...++... .+.
T Consensus 142 TG~H~TT~lcl~~l~~~~------~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~ 214 (295)
T PF06325_consen 142 TGHHPTTRLCLELLEKYV------KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIE 214 (295)
T ss_dssp SSHCHHHHHHHHHHHHHS------STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEE
T ss_pred CCCCHHHHHHHHHHHHhc------cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEE
Confidence 334444444456666665 5678999999999999999988999899999999999999999998776333 333
Q ss_pred EccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHH
Q psy8370 136 NVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL 215 (256)
Q Consensus 136 ~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (256)
.....+.. .. +||+|+++-... -+..++..+.+.|+|||.++++. ......+++.+
T Consensus 215 v~~~~~~~--~~--~~dlvvANI~~~-----vL~~l~~~~~~~l~~~G~lIlSG---------------Il~~~~~~v~~ 270 (295)
T PF06325_consen 215 VSLSEDLV--EG--KFDLVVANILAD-----VLLELAPDIASLLKPGGYLILSG---------------ILEEQEDEVIE 270 (295)
T ss_dssp ESCTSCTC--CS---EEEEEEES-HH-----HHHHHHHHCHHHEEEEEEEEEEE---------------EEGGGHHHHHH
T ss_pred EEEecccc--cc--cCCEEEECCCHH-----HHHHHHHHHHHhhCCCCEEEEcc---------------ccHHHHHHHHH
Confidence 22222222 23 899999985543 33568888999999999999963 22334577888
Q ss_pred HHHhcCCcEEEeeeecC
Q psy8370 216 LFSKANLKCVKSEKVTG 232 (256)
Q Consensus 216 ~l~~~gf~~~~~~~~~~ 232 (256)
.+++ ||.+++......
T Consensus 271 a~~~-g~~~~~~~~~~~ 286 (295)
T PF06325_consen 271 AYKQ-GFELVEEREEGE 286 (295)
T ss_dssp HHHT-TEEEEEEEEETT
T ss_pred HHHC-CCEEEEEEEECC
Confidence 8876 999987765443
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.2e-16 Score=113.68 Aligned_cols=153 Identities=18% Similarity=0.246 Sum_probs=106.3
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
+...-.++||+|||.|.++..|+.+. .+++++|+|+.+++.|+++..... ++ .+...|+.+..+. + .||+|+++
T Consensus 40 p~~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~~-~V-~~~~~dvp~~~P~-~--~FDLIV~S 113 (201)
T PF05401_consen 40 PRRRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGLP-HV-EWIQADVPEFWPE-G--RFDLIVLS 113 (201)
T ss_dssp TTSSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-S-SE-EEEES-TTT---S-S---EEEEEEE
T ss_pred CccccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCCC-Ce-EEEECcCCCCCCC-C--CeeEEEEe
Confidence 34556889999999999999997665 599999999999999999988653 77 9999999877554 3 69999999
Q ss_pred hhhhccCH-HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCc
Q psy8370 158 WVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKS 236 (256)
Q Consensus 158 ~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~ 236 (256)
.+++++.+ +++..++..+.+.|+|||.+++....... +. ........+.+..+|.+.=-++...+-....++.
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~-c~-----~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~ 187 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDAN-CR-----RWGHAAGAETVLEMLQEHLTEVERVECRGGSPNE 187 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH-HH-----HTT-S--HHHHHHHHHHHSEEEEEEEEE-SSTTS
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCc-cc-----ccCcccchHHHHHHHHHHhhheeEEEEcCCCCCC
Confidence 99999975 68889999999999999999997542211 11 1112236788888998864444445545555555
Q ss_pred ceeeeE
Q psy8370 237 LFKIYM 242 (256)
Q Consensus 237 ~~~~~~ 242 (256)
..-+-.
T Consensus 188 ~~~~~~ 193 (201)
T PF05401_consen 188 DCLLAR 193 (201)
T ss_dssp EEEEEE
T ss_pred ceEeee
Confidence 444443
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >KOG1271|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-16 Score=113.07 Aligned_cols=127 Identities=22% Similarity=0.307 Sum_probs=103.0
Q ss_pred CeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CC-cceEEEccccccCCCCCCCceeEEEechh
Q psy8370 83 TRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DK-LDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 83 ~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~-i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.+|||+|||.|.++..|++.++. ..+|||+|+.+++.|+...+..+ .+ | .|.+.|+.+.....+ +||+|+--..
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I-~f~q~DI~~~~~~~~--qfdlvlDKGT 145 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEI-RFQQLDITDPDFLSG--QFDLVLDKGT 145 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcce-eEEEeeccCCccccc--ceeEEeecCc
Confidence 39999999999999999999987 49999999999999998887766 23 6 999999988766555 8999987655
Q ss_pred hhccC------HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 160 LMFIL------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 160 l~~~~------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
+..+. ...+...+..+.+.|+|||+|+|+ +..+|.+++...+...||+.....
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvIt----------------SCN~T~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVIT----------------SCNFTKDELVEEFENFNFEYLSTV 204 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEE----------------ecCccHHHHHHHHhcCCeEEEEee
Confidence 44331 122355788899999999999996 455678999999999999876644
|
|
| >KOG4300|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.9e-16 Score=113.76 Aligned_cols=148 Identities=22% Similarity=0.252 Sum_probs=109.0
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
.......|||+|||||..-.++--....+|+++|+++.|.+.+.+.+.... .++..|+.++.++++...+ +++|+|++
T Consensus 73 gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d-~s~DtVV~ 151 (252)
T KOG4300|consen 73 GKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLAD-GSYDTVVC 151 (252)
T ss_pred cccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccccc-CCeeeEEE
Confidence 445567789999999998877632233399999999999999999887654 4563588999998874333 59999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-------cc----cCCCCceeeCHHHHHHHHHhcCCcEE
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EY----DDEDSSVVRSLPQFCLLFSKANLKCV 225 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------~~----~~~~~~~~~~~~~~~~~l~~~gf~~~ 225 (256)
..++... ++..+.|+++.++|+|||.+++.++.+..... .. .-......++. +.-+.++.+.|+..
T Consensus 152 TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltr-d~~e~Leda~f~~~ 228 (252)
T KOG4300|consen 152 TLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTR-DTGELLEDAEFSID 228 (252)
T ss_pred EEEEecc--CCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEeh-hHHHHhhhcccccc
Confidence 9999988 56679999999999999999998876655432 00 11111122333 34467888899888
Q ss_pred Eeee
Q psy8370 226 KSEK 229 (256)
Q Consensus 226 ~~~~ 229 (256)
+.+.
T Consensus 229 ~~kr 232 (252)
T KOG4300|consen 229 SCKR 232 (252)
T ss_pred hhhc
Confidence 7664
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.6e-15 Score=108.13 Aligned_cols=146 Identities=14% Similarity=0.122 Sum_probs=104.6
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~ 146 (256)
+.+...+ +++.+|||+|||.|.+...|........+|+|++++.+..|.++ .+ .++++|+.+....-
T Consensus 5 ~~I~~~I------~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r------Gv-~Viq~Dld~gL~~f 71 (193)
T PF07021_consen 5 QIIAEWI------EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR------GV-SVIQGDLDEGLADF 71 (193)
T ss_pred HHHHHHc------CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc------CC-CEEECCHHHhHhhC
Confidence 3455555 77899999999999999999775433899999999988877665 45 78999998765322
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc------------------cccCCCCceee
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------------------EYDDEDSSVVR 208 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------------------~~~~~~~~~~~ 208 (256)
.+++||.|+++.+++++. ....+|+++.|+ |...+++-++...... .+.........
T Consensus 72 ~d~sFD~VIlsqtLQ~~~--~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~ 146 (193)
T PF07021_consen 72 PDQSFDYVILSQTLQAVR--RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLC 146 (193)
T ss_pred CCCCccEEehHhHHHhHh--HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccc
Confidence 235999999999999994 445788888776 4456665433322110 01111122235
Q ss_pred CHHHHHHHHHhcCCcEEEeeee
Q psy8370 209 SLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 209 ~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
|..++..+.++.|+++++....
T Consensus 147 Ti~DFe~lc~~~~i~I~~~~~~ 168 (193)
T PF07021_consen 147 TIKDFEDLCRELGIRIEERVFL 168 (193)
T ss_pred cHHHHHHHHHHCCCEEEEEEEE
Confidence 9999999999999999876543
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=130.39 Aligned_cols=110 Identities=22% Similarity=0.219 Sum_probs=89.7
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC--CCCCCCceeEEE
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK--PEDLNIKYDVIW 155 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~--~~~~~~~~D~V~ 155 (256)
..++.+|||+|||+|..+..++.... .+++|+|+|+.|++.++++....+.++ .++++|..+++ ..++ +||+|+
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~i-e~I~gDa~dLp~~fede--SFDvVV 492 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSW-NVIKGDAINLSSSFEKE--SVDTIV 492 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCe-EEEEcchHhCccccCCC--CEEEEE
Confidence 34678999999999999988876543 399999999999999998876554456 77888988765 3334 899999
Q ss_pred echhhhcc-----------CHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 156 IQWVLMFI-----------LDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 156 ~~~~l~~~-----------~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
++.++|++ +.++..+++++++++|||||.+++.+..
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 99988865 2356789999999999999999998753
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.8e-16 Score=120.56 Aligned_cols=90 Identities=18% Similarity=0.160 Sum_probs=77.0
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhh
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 160 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l 160 (256)
++.+|||+|||||.++..+++....+|+|+|+|++|++.++++ . .+.++|+.+++..++ +||+|++..++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~-------~-~~~~~d~~~lp~~d~--sfD~v~~~~~l 120 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA-------D-DKVVGSFEALPFRDK--SFDVVMSSFAL 120 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc-------c-ceEEechhhCCCCCC--CEEEEEecChh
Confidence 4789999999999999999877423899999999999999864 1 457888888877666 99999999999
Q ss_pred hccCHHHHHHHHHHHhhhcCCC
Q psy8370 161 MFILDEDIIKFLNLCKQILNKN 182 (256)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~Lkpg 182 (256)
++++ +..+.+++++|+|||.
T Consensus 121 ~~~~--d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 121 HASD--NIEKVIAEFTRVSRKQ 140 (226)
T ss_pred hccC--CHHHHHHHHHHHhcCc
Confidence 9984 5578999999999994
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-15 Score=112.93 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=95.9
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...++.+|||+|||+|.++..++..+. .+|+++|+++.+++.++++....+ .++ .++.+|.... ... +||+|+
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i-~~~~~d~~~~--~~~--~~D~v~ 102 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNI-DIIPGEAPIE--LPG--KADAIF 102 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCe-EEEecCchhh--cCc--CCCEEE
Confidence 456788999999999999999987754 389999999999999999887654 356 7788776422 123 799999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
+.....++ ..+++.+.+.|+|||.+++.... ..+..++.++++++||..++.
T Consensus 103 ~~~~~~~~-----~~~l~~~~~~Lk~gG~lv~~~~~---------------~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 103 IGGSGGNL-----TAIIDWSLAHLHPGGRLVLTFIL---------------LENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred ECCCccCH-----HHHHHHHHHhcCCCeEEEEEEec---------------HhhHHHHHHHHHHCCCCcceE
Confidence 97654443 46889999999999999885211 123467788999999976543
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=120.84 Aligned_cols=107 Identities=19% Similarity=0.261 Sum_probs=85.2
Q ss_pred CCCCCeEEEEcCCCCH----hHHHHHHhcC------CeEEEEeCCHHHHHHHHHHHHh----------------------
Q psy8370 79 DPGKTRVLDVGAGIGR----ISKYLLAKHF------DKIDLLEQSSKFIEQAKEEILK---------------------- 126 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~----~~~~l~~~~~------~~v~~vD~s~~~~~~a~~~~~~---------------------- 126 (256)
..++.+|+|+|||+|. ++..+++.+. .+|+|+|+|+.|++.|++..-.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3456899999999996 4444444321 2899999999999999985310
Q ss_pred ------cCCCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 127 ------DCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 127 ------~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
...++ .|...|+.+.++..+ +||+|+|.++++|++++...++++++++.|+|||.+++.
T Consensus 177 ~~v~~~ir~~V-~F~~~dl~~~~~~~~--~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 177 YRVKPELKERV-RFAKHNLLAESPPLG--DFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EEEChHHhCcC-EEeeccCCCCCCccC--CCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 01246 888999988766445 899999999999998888889999999999999999996
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-15 Score=118.22 Aligned_cols=122 Identities=19% Similarity=0.229 Sum_probs=91.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.++++....+... .+. ...... +||+|+++..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~-~~~------~~~~~~--~fD~Vvani~ 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVEL-NVY------LPQGDL--KADVIVANIL 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCc-eEE------EccCCC--CcCEEEEcCc
Confidence 5688999999999999998877777679999999999999999987654211 111 111111 6999998744
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeee
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
. +.+..+++++.++|+|||.++++.... ...+++...+++.||+++.....
T Consensus 189 ~-----~~~~~l~~~~~~~LkpgG~lilsgi~~---------------~~~~~v~~~l~~~Gf~~~~~~~~ 239 (250)
T PRK00517 189 A-----NPLLELAPDLARLLKPGGRLILSGILE---------------EQADEVLEAYEEAGFTLDEVLER 239 (250)
T ss_pred H-----HHHHHHHHHHHHhcCCCcEEEEEECcH---------------hhHHHHHHHHHHCCCEEEEEEEe
Confidence 2 234578999999999999999963221 23567889999999999876543
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-15 Score=119.79 Aligned_cols=125 Identities=18% Similarity=0.220 Sum_probs=93.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.++.+|||+|||+|.++..++..+..+|+++|+++.+++.++++....+. ++ .....+... .... +||+|+++
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~-~~~~~~~~~--~~~~--~fDlVvan 232 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRL-QVKLIYLEQ--PIEG--KADVIVAN 232 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcce-EEEeccccc--ccCC--CceEEEEe
Confidence 45789999999999999988877777999999999999999999876542 23 444444222 2223 79999998
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeee
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
...+ .+..+++++.+.|+|||.++++... .....++.+.+++. |+++.....
T Consensus 233 ~~~~-----~l~~ll~~~~~~LkpgG~li~sgi~---------------~~~~~~v~~~~~~~-f~~~~~~~~ 284 (288)
T TIGR00406 233 ILAE-----VIKELYPQFSRLVKPGGWLILSGIL---------------ETQAQSVCDAYEQG-FTVVEIRQR 284 (288)
T ss_pred cCHH-----HHHHHHHHHHHHcCCCcEEEEEeCc---------------HhHHHHHHHHHHcc-CceeeEecc
Confidence 6543 3457899999999999999996321 12346778888776 988776543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.1e-15 Score=113.33 Aligned_cols=147 Identities=19% Similarity=0.244 Sum_probs=114.1
Q ss_pred HHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCC
Q psy8370 68 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKP 144 (256)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~ 144 (256)
+|..+. ......+|||||||+|..+..++.+.. .++++||+++.+.+.|++++...+ .++ +++++|+.++..
T Consensus 35 LL~~~~----~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri-~v~~~Di~~~~~ 109 (248)
T COG4123 35 LLAAFA----PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERI-QVIEADIKEFLK 109 (248)
T ss_pred HHHhhc----ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhce-eEehhhHHHhhh
Confidence 455555 455689999999999999999988843 599999999999999999998644 678 999999999876
Q ss_pred CCCCCceeEEEechh----------------hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceee
Q psy8370 145 EDLNIKYDVIWIQWV----------------LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVR 208 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~----------------l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 208 (256)
.....+||+|+|+=- -+|...-.++.+++.+.++|||||.+.++- . ..
T Consensus 110 ~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~----------r------~e 173 (248)
T COG4123 110 ALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH----------R------PE 173 (248)
T ss_pred cccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe----------c------HH
Confidence 544347999999811 122222347889999999999999999962 1 11
Q ss_pred CHHHHHHHHHhcCCcEEEeeeecCCCC
Q psy8370 209 SLPQFCLLFSKANLKCVKSEKVTGMPK 235 (256)
Q Consensus 209 ~~~~~~~~l~~~gf~~~~~~~~~~~~~ 235 (256)
...++..++.+.+|...+.......+.
T Consensus 174 rl~ei~~~l~~~~~~~k~i~~V~p~~~ 200 (248)
T COG4123 174 RLAEIIELLKSYNLEPKRIQFVYPKIG 200 (248)
T ss_pred HHHHHHHHHHhcCCCceEEEEecCCCC
Confidence 346788999999999988876665544
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.3e-15 Score=103.30 Aligned_cols=103 Identities=13% Similarity=0.061 Sum_probs=81.9
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCC-CCCCCceeEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKP-EDLNIKYDVI 154 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~-~~~~~~~D~V 154 (256)
...++.+|||+|||+|.++..++.... .+|+++|+++.+++.++++....+ .++ .++..|+..... ... +||+|
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~D~v 92 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNI-VIVEGDAPEALEDSLP--EPDRV 92 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCce-EEEeccccccChhhcC--CCCEE
Confidence 456678999999999999999987643 489999999999999999887654 355 778888765322 223 79999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
++..... ....+++.+++.|+|||.+++.
T Consensus 93 ~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 93 FIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred EECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 9976433 3358999999999999999985
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-14 Score=115.20 Aligned_cols=108 Identities=13% Similarity=0.147 Sum_probs=84.1
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccC-CCCC--CCcee
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFK-PEDL--NIKYD 152 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~-~~~~--~~~~D 152 (256)
.++.+|||+|||+|..+..+++... .+|+++|+|+.|++.+++++.... .++ .++++|+.+.. .... .+...
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v-~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEV-HGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceE-EEEEEcccchhhhhcccccCCeE
Confidence 4568999999999999999987752 389999999999999999876532 345 66889987642 2211 01234
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
++++..+++++++++...+++++++.|+|||.+++.
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 555567889998888899999999999999999974
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.7e-15 Score=109.39 Aligned_cols=121 Identities=21% Similarity=0.256 Sum_probs=92.6
Q ss_pred cchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEc
Q psy8370 60 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNV 137 (256)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-i~~~~~~ 137 (256)
.......+++.+.+. ..+..+|||+|||+|.++..++..+.. +|+++|+++.+++.+++++...+.. + .++..
T Consensus 14 ~~~d~~t~lL~~~l~----~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v-~~~~~ 88 (170)
T PF05175_consen 14 PRLDAGTRLLLDNLP----KHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENV-EVVQS 88 (170)
T ss_dssp TSHHHHHHHHHHHHH----HHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTE-EEEES
T ss_pred CCCCHHHHHHHHHHh----hccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccc-ccccc
Confidence 344455566666661 227889999999999999999888775 7999999999999999999887633 6 88898
Q ss_pred cccccCCCCCCCceeEEEechhhhccCH---HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 138 GIQDFKPEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 138 d~~~~~~~~~~~~~D~V~~~~~l~~~~~---~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|..+... .. +||+|+++--++.-.. ....++++.+.+.|+|||.+++.
T Consensus 89 d~~~~~~-~~--~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 89 DLFEALP-DG--KFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp STTTTCC-TT--CEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccc-cc--ceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 9876554 33 7999999854443322 34678999999999999999875
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-15 Score=115.19 Aligned_cols=127 Identities=15% Similarity=0.058 Sum_probs=95.8
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccc-cccC--CCCCCCceeEEE
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGI-QDFK--PEDLNIKYDVIW 155 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~-~~~~--~~~~~~~~D~V~ 155 (256)
++.+|||+|||+|..+..++.... .+++++|+|+.+++.++++....+ .++ .++.+|+ ..++ .... +||+|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v-~~~~~d~~~~l~~~~~~~--~~D~V~ 116 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNL-RLLCGDAVEVLLDMFPDG--SLDRIY 116 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCE-EEEecCHHHHHHHHcCcc--ccceEE
Confidence 678999999999999999977643 389999999999999999887654 456 8899998 6554 3334 799999
Q ss_pred echhhhccC------HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEE
Q psy8370 156 IQWVLMFIL------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 225 (256)
Q Consensus 156 ~~~~l~~~~------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~ 225 (256)
+.....+.. ......++++++++|+|||.+++..... .-..++.+.+++.|+.+.
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~---------------~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE---------------GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH---------------HHHHHHHHHHHhCccccc
Confidence 875432221 1123579999999999999999963111 123567788888998765
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-14 Score=109.07 Aligned_cols=137 Identities=14% Similarity=0.115 Sum_probs=95.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc-C-CCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF-K-PEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~-~-~~~~~~~~D~V~~~ 157 (256)
.++.+|||+|||+|.++..++......++|+|+++.+++.+++. ++ .++.+|+.+. + ... ++||+|+++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------~~-~~~~~d~~~~l~~~~~--~sfD~Vi~~ 82 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------GV-NVIQGDLDEGLEAFPD--KSFDYVILS 82 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------CC-eEEEEEhhhcccccCC--CCcCEEEEh
Confidence 46679999999999999988765444789999999999888642 35 7788888653 2 223 389999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCC----------CCcc--------ccCCCCceeeCHHHHHHHHHh
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG----------VKNE--------YDDEDSSVVRSLPQFCLLFSK 219 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~----------~~~~--------~~~~~~~~~~~~~~~~~~l~~ 219 (256)
.+++|++ +...+++++.+.+++ .+++.+.... .... ..........+.+++.+++++
T Consensus 83 ~~l~~~~--d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~ 157 (194)
T TIGR02081 83 QTLQATR--NPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGE 157 (194)
T ss_pred hHhHcCc--CHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHH
Confidence 9999995 455788888887664 3333111100 0000 001111234689999999999
Q ss_pred cCCcEEEeeee
Q psy8370 220 ANLKCVKSEKV 230 (256)
Q Consensus 220 ~gf~~~~~~~~ 230 (256)
+||+++.....
T Consensus 158 ~Gf~v~~~~~~ 168 (194)
T TIGR02081 158 LNLRILDRAAF 168 (194)
T ss_pred CCCEEEEEEEe
Confidence 99999876654
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-14 Score=110.40 Aligned_cols=131 Identities=14% Similarity=0.087 Sum_probs=95.2
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
...++.+|||+|||+|.++..++..+..+++++|+++.+++.++++....+.++ .++..|+.+... .. +||+|+++
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~-~~~~~d~~~~~~-~~--~fD~Vi~n 108 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDV-DVRRGDWARAVE-FR--PFDVVVSN 108 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCee-EEEECchhhhcc-CC--CeeEEEEC
Confidence 356678999999999999999877665599999999999999999887655556 788888876432 33 79999997
Q ss_pred hhhhccC-------------------HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHH
Q psy8370 158 WVLMFIL-------------------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFS 218 (256)
Q Consensus 158 ~~l~~~~-------------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 218 (256)
--....+ ...+..+++++.+.|+|||.+++...... ...++.+.++
T Consensus 109 pPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~---------------~~~~~~~~l~ 173 (223)
T PRK14967 109 PPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS---------------GVERTLTRLS 173 (223)
T ss_pred CCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc---------------CHHHHHHHHH
Confidence 3211110 01246688999999999999998532211 2345666777
Q ss_pred hcCCcEEEe
Q psy8370 219 KANLKCVKS 227 (256)
Q Consensus 219 ~~gf~~~~~ 227 (256)
+.||.+...
T Consensus 174 ~~g~~~~~~ 182 (223)
T PRK14967 174 EAGLDAEVV 182 (223)
T ss_pred HCCCCeEEE
Confidence 777765543
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.8e-14 Score=102.95 Aligned_cols=149 Identities=17% Similarity=0.162 Sum_probs=114.1
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCC
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~ 146 (256)
++.+......+.++.+++|||||+|..+..++..++. +|+++|-++++++..+++.+..+ .++ .++.+++-+.....
T Consensus 22 IRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~-~vv~g~Ap~~L~~~ 100 (187)
T COG2242 22 IRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNL-EVVEGDAPEALPDL 100 (187)
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcE-EEEeccchHhhcCC
Confidence 4444334556889999999999999999999855544 99999999999999999998877 567 88999988776654
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCC-cEE
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANL-KCV 225 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf-~~~ 225 (256)
. ++|.|+.... ..+ ..+++.+...|+|||.+++.-. ...+.....+.+++.|+ +++
T Consensus 101 ~--~~daiFIGGg-~~i-----~~ile~~~~~l~~ggrlV~nai---------------tlE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 101 P--SPDAIFIGGG-GNI-----EEILEAAWERLKPGGRLVANAI---------------TLETLAKALEALEQLGGREIV 157 (187)
T ss_pred C--CCCEEEECCC-CCH-----HHHHHHHHHHcCcCCeEEEEee---------------cHHHHHHHHHHHHHcCCceEE
Confidence 4 6999999887 433 5799999999999999998421 11234556778899999 777
Q ss_pred EeeeecCCCCcceeee
Q psy8370 226 KSEKVTGMPKSLFKIY 241 (256)
Q Consensus 226 ~~~~~~~~~~~~~~~~ 241 (256)
+.......+...+..|
T Consensus 158 ~v~is~~~~lg~~~~~ 173 (187)
T COG2242 158 QVQISRGKPLGGGTMF 173 (187)
T ss_pred EEEeecceeccCeeEe
Confidence 7766555554444333
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4e-14 Score=115.92 Aligned_cols=106 Identities=19% Similarity=0.187 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
....+|||+|||+|.++..++..... +++++|+|+.+++.+++++...+... .+...|..... .+ .||+|+++-
T Consensus 195 ~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~-~~~~~D~~~~~--~~--~fDlIvsNP 269 (342)
T PRK09489 195 HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEG-EVFASNVFSDI--KG--RFDMIISNP 269 (342)
T ss_pred cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-EEEEccccccc--CC--CccEEEECC
Confidence 34568999999999999999877643 89999999999999999988765444 66777765432 23 799999998
Q ss_pred hhhcc---CHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 159 VLMFI---LDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 159 ~l~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+|.. .......+++++.+.|+|||.++++.+
T Consensus 270 PFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 270 PFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 77753 224567899999999999999999743
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-13 Score=108.29 Aligned_cols=142 Identities=13% Similarity=-0.010 Sum_probs=95.9
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC---CCCCCCce
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK---PEDLNIKY 151 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~---~~~~~~~~ 151 (256)
..+.++.+|||+|||+|.++..++.... ..|++||+++.+.+...+..... .++ .++..|+.... .... ++
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI-~~I~~Da~~p~~y~~~~~--~v 203 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNI-VPIIEDARYPQKYRMLVP--MV 203 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCC-EEEECCccChhhhhcccC--CC
Confidence 3567889999999999999999987742 38999999987654444433322 366 78888876432 1223 79
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHH----HHHHHhcCCcEEEe
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQF----CLLFSKANLKCVKS 227 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~gf~~~~~ 227 (256)
|+|++... . +++...++.++.++|||||.|++...... .....+++++ .+.|+++||++++.
T Consensus 204 DvV~~Dva---~-pdq~~il~~na~r~LKpGG~~vI~ika~~----------id~g~~pe~~f~~ev~~L~~~GF~~~e~ 269 (293)
T PTZ00146 204 DVIFADVA---Q-PDQARIVALNAQYFLKNGGHFIISIKANC----------IDSTAKPEVVFASEVQKLKKEGLKPKEQ 269 (293)
T ss_pred CEEEEeCC---C-cchHHHHHHHHHHhccCCCEEEEEEeccc----------cccCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 99999864 1 24445677789999999999999521111 1111223332 37889999998877
Q ss_pred eeecCCCCc
Q psy8370 228 EKVTGMPKS 236 (256)
Q Consensus 228 ~~~~~~~~~ 236 (256)
.....+...
T Consensus 270 v~L~Py~~~ 278 (293)
T PTZ00146 270 LTLEPFERD 278 (293)
T ss_pred EecCCccCC
Confidence 654444443
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.5e-14 Score=107.71 Aligned_cols=145 Identities=18% Similarity=0.228 Sum_probs=103.6
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhh
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 160 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l 160 (256)
...++||||+|.|..+..++ ..+.+|+++|.|+.|....+++ .+...+..++..... +||+|.|.+++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~-~~f~~v~aTE~S~~Mr~rL~~k---------g~~vl~~~~w~~~~~--~fDvIscLNvL 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA-PLFKEVYATEASPPMRWRLSKK---------GFTVLDIDDWQQTDF--KFDVISCLNVL 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHH-hhcceEEeecCCHHHHHHHHhC---------CCeEEehhhhhccCC--ceEEEeehhhh
Confidence 56789999999999999984 5666999999999997766654 334445555544444 89999999999
Q ss_pred hccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCC------------ccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 161 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK------------NEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
..- +....+|+.+++.|+|+|.+++.-...-.+. ..++.....+.-....+.+.++.+||+++...
T Consensus 162 DRc--~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~t 239 (265)
T PF05219_consen 162 DRC--DRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWT 239 (265)
T ss_pred hcc--CCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 888 4556899999999999999999632111110 01222233333344556688999999999988
Q ss_pred eecCCCCccee
Q psy8370 229 KVTGMPKSLFK 239 (256)
Q Consensus 229 ~~~~~~~~~~~ 239 (256)
+-....+....
T Consensus 240 r~PYLcEGD~~ 250 (265)
T PF05219_consen 240 RLPYLCEGDLY 250 (265)
T ss_pred ccCccccCccc
Confidence 87776654433
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.7e-14 Score=106.13 Aligned_cols=132 Identities=16% Similarity=0.155 Sum_probs=97.9
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHh-cC-CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCc
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIK 150 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~ 150 (256)
......++.+|||+|||+|.++..++.. +. .+|+++|+++.+++.++++....+ .++ .++.+|+.+..+... +.
T Consensus 34 ~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v-~~~~~d~~~~l~~~~-~~ 111 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNI-VLIKGEAPEILFTIN-EK 111 (198)
T ss_pred HHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCe-EEEEechhhhHhhcC-CC
Confidence 3446778899999999999999988764 22 389999999999999999987665 356 788888876533221 37
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
||.|++.... .....+++.+.+.|+|||.+++.... ..+..+....++++||.....+
T Consensus 112 ~D~V~~~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~---------------~~~~~~~~~~l~~~g~~~~~~~ 169 (198)
T PRK00377 112 FDRIFIGGGS-----EKLKEIISASWEIIKKGGRIVIDAIL---------------LETVNNALSALENIGFNLEITE 169 (198)
T ss_pred CCEEEECCCc-----ccHHHHHHHHHHHcCCCcEEEEEeec---------------HHHHHHHHHHHHHcCCCeEEEE
Confidence 9999985421 34467999999999999999874210 1134677788889998654433
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.1e-14 Score=109.02 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=82.1
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCce
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
.....++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++...+ .++ .+..+|..+..+... +|
T Consensus 67 ~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v-~~~~~d~~~~~~~~~--~f 143 (205)
T PRK13944 67 LIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVV-EVYHGDGKRGLEKHA--PF 143 (205)
T ss_pred hcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcE-EEEECCcccCCccCC--Cc
Confidence 3356678899999999999998887653 2389999999999999999987665 236 888999877655444 89
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+|++..++.+++ +++.+.|+|||.+++.
T Consensus 144 D~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 144 DAIIVTAAASTIP--------SALVRQLKDGGVLVIP 172 (205)
T ss_pred cEEEEccCcchhh--------HHHHHhcCcCcEEEEE
Confidence 9999998877664 3577899999999885
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-14 Score=112.82 Aligned_cols=106 Identities=14% Similarity=0.213 Sum_probs=84.8
Q ss_pred CCCCeEEEEcCCCCHhHHH-HHHhc-CC-eEEEEeCCHHHHHHHHHHHHh-cC--CCcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKY-LLAKH-FD-KIDLLEQSSKFIEQAKEEILK-DC--DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~-l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~-~~--~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
.++.+|+|||||.|.++.. +++.. .. +++++|+++.+++.|++.+.. .+ .++ .|..+|+.+...... .||+
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV-~F~~~Da~~~~~~l~--~FDl 198 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRM-FFHTADVMDVTESLK--EYDV 198 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCc-EEEECchhhcccccC--CcCE
Confidence 3789999999998755443 33333 22 799999999999999999854 32 467 999999988654334 7999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|++. +++++..++..++++++++.|+|||.+++..
T Consensus 199 VF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 199 VFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999 8888865677899999999999999999963
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.2e-14 Score=115.54 Aligned_cols=125 Identities=14% Similarity=0.229 Sum_probs=91.5
Q ss_pred ccccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC----CCc
Q psy8370 57 ISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC----DKL 131 (256)
Q Consensus 57 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~----~~i 131 (256)
++...+....+++-..+ +.....+|||+|||+|.++..++.+++. +|+++|+|+.+++.+++++...+ .++
T Consensus 208 Fs~~~LD~GtrllL~~l----p~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v 283 (378)
T PRK15001 208 FSRTGLDIGARFFMQHL----PENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRC 283 (378)
T ss_pred cCCCCcChHHHHHHHhC----CcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceE
Confidence 33444444455555555 3334579999999999999999887643 89999999999999999986543 145
Q ss_pred ceEEEccccccCCCCCCCceeEEEechhhhc---cCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 132 DKCYNVGIQDFKPEDLNIKYDVIWIQWVLMF---ILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 132 ~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~---~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+...|...... .. +||+|+|+--+|. +++....++++.+++.|+|||.++++.
T Consensus 284 -~~~~~D~l~~~~-~~--~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 284 -EFMINNALSGVE-PF--RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred -EEEEccccccCC-CC--CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 677777654322 23 7999999854442 444556789999999999999999974
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-13 Score=107.75 Aligned_cols=129 Identities=18% Similarity=0.224 Sum_probs=96.3
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEEEech
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.+.+|||+|||+|.++..++..... .++|+|+++.+++.++.+....+. ++ .+..+|+.+.. ... +||+|+++-
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-~~~~~d~~~~~-~~~--~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNV-TFLQSDWFEPL-PGG--KFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeE-EEEECchhccC-cCC--ceeEEEECC
Confidence 4569999999999999999876433 899999999999999999876553 46 88999987643 233 799999852
Q ss_pred h------hhccCH------------------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHH
Q psy8370 159 V------LMFILD------------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFC 214 (256)
Q Consensus 159 ~------l~~~~~------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (256)
- .+.+.. .....+++.+.+.|+|||.+++... ....+++.
T Consensus 163 Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~----------------~~~~~~~~ 226 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG----------------YDQGEAVR 226 (251)
T ss_pred CCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----------------ccHHHHHH
Confidence 1 121211 1234788999999999999998521 12346788
Q ss_pred HHHHhcCCcEEEeee
Q psy8370 215 LLFSKANLKCVKSEK 229 (256)
Q Consensus 215 ~~l~~~gf~~~~~~~ 229 (256)
++++++||+.+....
T Consensus 227 ~~l~~~gf~~v~~~~ 241 (251)
T TIGR03534 227 ALFEAAGFADVETRK 241 (251)
T ss_pred HHHHhCCCCceEEEe
Confidence 999999998776543
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-13 Score=102.09 Aligned_cols=130 Identities=18% Similarity=0.154 Sum_probs=97.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC---cceEEEccccccCCCCCCCceeEEEe
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK---LDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
.++.+|||+|||+|.++..++..+. +++++|+|+.+++.+++++...+.. + .+...|+.+... .. +||+|++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~d~~~~~~-~~--~~d~vi~ 96 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAKLNNIRNNGV-EVIRSDLFEPFR-GD--KFDVILF 96 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHHHHHHHHHcCCCCcce-EEEecccccccc-cc--CceEEEE
Confidence 5678999999999999999988854 8999999999999999988765422 5 778888766433 22 6999998
Q ss_pred chhhhcc-------------------CHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHH
Q psy8370 157 QWVLMFI-------------------LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLF 217 (256)
Q Consensus 157 ~~~l~~~-------------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 217 (256)
+..+... ....+..+++++.++|+|||.+++.... ....+++..++
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~---------------~~~~~~l~~~~ 161 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS---------------LTGEDEVLEYL 161 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc---------------cCCHHHHHHHH
Confidence 7443221 0133567899999999999998875311 12346788999
Q ss_pred HhcCCcEEEeee
Q psy8370 218 SKANLKCVKSEK 229 (256)
Q Consensus 218 ~~~gf~~~~~~~ 229 (256)
.++||++.....
T Consensus 162 ~~~g~~~~~~~~ 173 (188)
T PRK14968 162 EKLGFEAEVVAE 173 (188)
T ss_pred HHCCCeeeeeee
Confidence 999998876553
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.2e-14 Score=107.84 Aligned_cols=103 Identities=20% Similarity=0.170 Sum_probs=82.6
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCce
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
+.....++.+|||||||+|.++..++.... .+|+++|+++.+++.+++++...+ .++ .+..+|.....+... +|
T Consensus 70 ~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v-~~~~gd~~~~~~~~~--~f 146 (212)
T PRK13942 70 ELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNV-EVIVGDGTLGYEENA--PY 146 (212)
T ss_pred HHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCe-EEEECCcccCCCcCC--Cc
Confidence 344577889999999999999988876632 389999999999999999998765 357 899999876654444 89
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+|++......++ +.+.+.|||||.+++.
T Consensus 147 D~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 147 DRIYVTAAGPDIP--------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CEEEECCCcccch--------HHHHHhhCCCcEEEEE
Confidence 9999987765552 3466789999999985
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.1e-14 Score=107.67 Aligned_cols=102 Identities=18% Similarity=0.112 Sum_probs=82.1
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCcee
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
.....++.+|||||||+|.++..++..... +|+++|+++.+++.+++++...+ .++ .++.+|..+...... +||
T Consensus 72 ~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v-~~~~~d~~~~~~~~~--~fD 148 (215)
T TIGR00080 72 LLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNV-IVIVGDGTQGWEPLA--PYD 148 (215)
T ss_pred HhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCe-EEEECCcccCCcccC--CCC
Confidence 335678899999999999999998776532 59999999999999999998766 356 889999876554444 799
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+|++.....++ .+.+.+.|+|||.+++.
T Consensus 149 ~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 149 RIYVTAAGPKI--------PEALIDQLKEGGILVMP 176 (215)
T ss_pred EEEEcCCcccc--------cHHHHHhcCcCcEEEEE
Confidence 99988665544 24577899999999985
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-14 Score=109.34 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=82.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCC-CCCCceeEEEe
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPE-DLNIKYDVIWI 156 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~-~~~~~~D~V~~ 156 (256)
....+|||||||+|.++..++..... .++|+|+++.+++.++++....+ .++ .++.+|+.+.... ...+++|.|++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni-~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNL-HVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCE-EEEccCHHHHHHhhCCCCceeEEEE
Confidence 35679999999999999999887643 89999999999999999887654 367 8999999765421 11137999998
Q ss_pred chhhhccCH------HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 157 QWVLMFILD------EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 157 ~~~l~~~~~------~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+....+... -....++++++++|||||.+++.
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 754332211 01146899999999999999986
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=112.97 Aligned_cols=130 Identities=15% Similarity=-0.016 Sum_probs=98.4
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEE
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
.....++.+|||+|||+|.++..++..+. .++|+|+++.|++.++.++...+ .++ .+..+|+.+++.... +||+|
T Consensus 177 l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i-~~~~~D~~~l~~~~~--~~D~I 252 (329)
T TIGR01177 177 LARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDF-FVKRGDATKLPLSSE--SVDAI 252 (329)
T ss_pred HhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCC-eEEecchhcCCcccC--CCCEE
Confidence 33567788999999999999988766665 89999999999999999988665 345 788999998776544 89999
Q ss_pred Eechhh------h-ccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 155 WIQWVL------M-FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 155 ~~~~~l------~-~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
+++--+ . +...+....+++++.++|+|||.+++..+. ..++...++.+|| ++..
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~------------------~~~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT------------------RIDLESLAEDAFR-VVKR 313 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC------------------CCCHHHHHhhcCc-chhe
Confidence 996211 1 111133578999999999999999885211 1245678999999 7654
Q ss_pred e
Q psy8370 228 E 228 (256)
Q Consensus 228 ~ 228 (256)
.
T Consensus 314 ~ 314 (329)
T TIGR01177 314 F 314 (329)
T ss_pred e
Confidence 4
|
This family is found exclusively in the Archaea. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-12 Score=98.05 Aligned_cols=169 Identities=12% Similarity=0.155 Sum_probs=119.4
Q ss_pred hhhHHHHHHHHhccCCCCCCC-eEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccc
Q psy8370 63 QTSNQFLSSLYCQKKSDPGKT-RVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGI 139 (256)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~~~-~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~ 139 (256)
....+.|.+++ .... +|||||||||..+.+++...+. ...-.|+++......+......+ .++...+..|+
T Consensus 12 ~pIl~vL~~~l------~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv 85 (204)
T PF06080_consen 12 DPILEVLKQYL------PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDV 85 (204)
T ss_pred hHHHHHHHHHh------CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeec
Confidence 34445666666 3344 5999999999999999887654 56668999888777776665543 34445666676
Q ss_pred cccCCC-C-----CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc----------ccCCC
Q psy8370 140 QDFKPE-D-----LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE----------YDDED 203 (256)
Q Consensus 140 ~~~~~~-~-----~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~----------~~~~~ 203 (256)
...... . ..++||.|++.+++|-.+.+....+++.+.+.|++||.|++..+....+... +....
T Consensus 86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rd 165 (204)
T PF06080_consen 86 SAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRD 165 (204)
T ss_pred CCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCC
Confidence 554211 1 1248999999999999999999999999999999999999976655544321 11112
Q ss_pred C-ceeeCHHHHHHHHHhcCCcEEEeeeecCCCCcceee
Q psy8370 204 S-SVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKI 240 (256)
Q Consensus 204 ~-~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 240 (256)
. .=.++.+++.++..++|++.++. ...|.+..-+
T Consensus 166 p~~GiRD~e~v~~lA~~~GL~l~~~---~~MPANN~~L 200 (204)
T PF06080_consen 166 PEWGIRDIEDVEALAAAHGLELEED---IDMPANNLLL 200 (204)
T ss_pred CCcCccCHHHHHHHHHHCCCccCcc---cccCCCCeEE
Confidence 1 22368899999999999997654 4566554443
|
The function of this family is unknown. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.8e-13 Score=106.41 Aligned_cols=127 Identities=17% Similarity=0.228 Sum_probs=94.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
.++.+|||+|||+|.++..++.... .+++++|+|+.+++.|+++....+ .++ .++.+|+.+..+ .. +||+|++
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i-~~~~~D~~~~~~-~~--~fD~Iv~ 195 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRV-TLIQSDLFAALP-GR--KYDLIVS 195 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-EEEECchhhccC-CC--CccEEEE
Confidence 3457999999999999999987653 389999999999999999988765 356 889999865432 23 6999998
Q ss_pred ch------hh-------hccCH----------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHH
Q psy8370 157 QW------VL-------MFILD----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQF 213 (256)
Q Consensus 157 ~~------~l-------~~~~~----------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (256)
+- .+ .+-|. +....+++.+.+.|+|||.+++... .+.+.+
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g-----------------~~~~~v 258 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG-----------------NSMEAL 258 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-----------------cCHHHH
Confidence 61 11 11111 2346789999999999999998521 123577
Q ss_pred HHHHHhcCCcEEEe
Q psy8370 214 CLLFSKANLKCVKS 227 (256)
Q Consensus 214 ~~~l~~~gf~~~~~ 227 (256)
.+++.++||.....
T Consensus 259 ~~~~~~~~~~~~~~ 272 (284)
T TIGR03533 259 EEAYPDVPFTWLEF 272 (284)
T ss_pred HHHHHhCCCceeee
Confidence 88999999877543
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7e-13 Score=109.56 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=95.5
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
++.+|||+|||+|.++..++... ..+++++|+|+.+++.++++....+.++ .++++|+.+...... ++||+|+++--
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV-~fi~gDl~e~~l~~~-~~FDLIVSNPP 328 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARV-EFAHGSWFDTDMPSE-GKWDIIVSNPP 328 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcE-EEEEcchhccccccC-CCccEEEECCC
Confidence 45699999999999999887654 3389999999999999999988766667 899999865432211 37999999621
Q ss_pred h------h-------ccC--------H--HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHH
Q psy8370 160 L------M-------FIL--------D--EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLL 216 (256)
Q Consensus 160 l------~-------~~~--------~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (256)
. . +-| + +....+++.+.+.|+|||.+++.-.. ...+.+.++
T Consensus 329 YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~----------------~Q~e~V~~l 392 (423)
T PRK14966 329 YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF----------------DQGAAVRGV 392 (423)
T ss_pred CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc----------------cHHHHHHHH
Confidence 0 0 000 0 12457888889999999998874211 124678899
Q ss_pred HHhcCCcEEEee
Q psy8370 217 FSKANLKCVKSE 228 (256)
Q Consensus 217 l~~~gf~~~~~~ 228 (256)
+++.||..++..
T Consensus 393 l~~~Gf~~v~v~ 404 (423)
T PRK14966 393 LAENGFSGVETL 404 (423)
T ss_pred HHHCCCcEEEEE
Confidence 999999876654
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=109.94 Aligned_cols=96 Identities=18% Similarity=0.134 Sum_probs=76.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcC----CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHF----DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
.+..+|||+|||+|.++..++.... ..++|+|+|+.+++.|+++. .++ .+..+|+.+++..++ +||+|+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----~~~-~~~~~d~~~lp~~~~--sfD~I~ 156 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----PQV-TFCVASSHRLPFADQ--SLDAII 156 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----CCC-eEEEeecccCCCcCC--ceeEEE
Confidence 3557899999999999998876532 26899999999999998763 245 788999988876655 899999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
+...- ..+++++++|||||.+++..+.
T Consensus 157 ~~~~~---------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 157 RIYAP---------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred EecCC---------CCHHHHHhhccCCCEEEEEeCC
Confidence 86531 2457899999999999997543
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.52 E-value=5e-14 Score=104.39 Aligned_cols=138 Identities=18% Similarity=0.245 Sum_probs=88.9
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~ 146 (256)
.++..+. ..+++..|.|+|||.+.++..+ ..+. .|+.+|+-+. +- .+..+|+...|.++
T Consensus 62 ~iI~~l~----~~~~~~viaD~GCGdA~la~~~-~~~~-~V~SfDLva~--------------n~-~Vtacdia~vPL~~ 120 (219)
T PF05148_consen 62 VIIEWLK----KRPKSLVIADFGCGDAKLAKAV-PNKH-KVHSFDLVAP--------------NP-RVTACDIANVPLED 120 (219)
T ss_dssp HHHHHHC----TS-TTS-EEEES-TT-HHHHH---S----EEEEESS-S--------------ST-TEEES-TTS-S--T
T ss_pred HHHHHHH----hcCCCEEEEECCCchHHHHHhc-ccCc-eEEEeeccCC--------------CC-CEEEecCccCcCCC
Confidence 3444444 4456689999999999999776 3444 7999998753 22 56889999998877
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
+ ++|+++++.+|... ++..+++++.|+|||||.|.|.+...... +.+++.+.++..||++..
T Consensus 121 ~--svDv~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IAEV~SRf~-------------~~~~F~~~~~~~GF~~~~ 182 (219)
T PF05148_consen 121 E--SVDVAVFCLSLMGT---NWPDFIREANRVLKPGGILKIAEVKSRFE-------------NVKQFIKALKKLGFKLKS 182 (219)
T ss_dssp T---EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGGG-S--------------HHHHHHHHHCTTEEEEE
T ss_pred C--ceeEEEEEhhhhCC---CcHHHHHHHHheeccCcEEEEEEecccCc-------------CHHHHHHHHHHCCCeEEe
Confidence 7 99999999998887 45679999999999999999986433332 568899999999999987
Q ss_pred eeeecCCCCcceeeeEEEecc
Q psy8370 227 SEKVTGMPKSLFKIYMFALKP 247 (256)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~ 247 (256)
.+ ...+.|..+.+....
T Consensus 183 ~d----~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 183 KD----ESNKHFVLFEFKKIR 199 (219)
T ss_dssp EE------STTEEEEEEEE-S
T ss_pred cc----cCCCeEEEEEEEEcC
Confidence 54 234566666665333
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.4e-13 Score=101.24 Aligned_cols=103 Identities=14% Similarity=0.104 Sum_probs=78.3
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccC-CCCCCCceeEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFK-PEDLNIKYDVI 154 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~-~~~~~~~~D~V 154 (256)
...++.+|||+|||+|.++..++.... .+|+++|+|+.+++.+++++...+ .++ .++.+|+.+.. .... .+|.+
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v-~~~~~d~~~~~~~~~~--~~d~v 113 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNV-EVIEGSAPECLAQLAP--APDRV 113 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCe-EEEECchHHHHhhCCC--CCCEE
Confidence 566788999999999999998875532 389999999999999999987654 356 78888876532 1112 35766
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+.... .....+++++.+.|+|||.+++..
T Consensus 114 ~~~~~------~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 114 CIEGG------RPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred EEECC------cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 55321 234679999999999999999863
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-13 Score=96.72 Aligned_cols=107 Identities=18% Similarity=0.239 Sum_probs=83.2
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
+.+|||+|||+|.++..+++.+..+++++|+++..++.++.++...+ .++ .++.+|+.+.......++||+|+++--
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRV-EVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTE-EEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceE-EEEECchhhchhhccCceeEEEEECCC
Confidence 46899999999999999988884599999999999999999988764 466 899999988762222248999999844
Q ss_pred hhccC------HHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 160 LMFIL------DEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 160 l~~~~------~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+.... ......+++++.+.|+|||.+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 43221 1235679999999999999999863
|
... |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.6e-13 Score=102.85 Aligned_cols=102 Identities=17% Similarity=0.088 Sum_probs=80.9
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEE
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
.....++.+|||+|||+|..+..++.... +++++|+++.+++.+++++...+ .++ .+..+|..+..+... +||+|
T Consensus 73 ~l~~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~--~fD~I 148 (212)
T PRK00312 73 LLELKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLGLHNV-SVRHGDGWKGWPAYA--PFDRI 148 (212)
T ss_pred hcCCCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCCCCce-EEEECCcccCCCcCC--CcCEE
Confidence 33567789999999999999988766654 89999999999999999988765 346 888888765433334 79999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
++...++++ .+.+.+.|+|||.+++..
T Consensus 149 ~~~~~~~~~--------~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 149 LVTAAAPEI--------PRALLEQLKEGGILVAPV 175 (212)
T ss_pred EEccCchhh--------hHHHHHhcCCCcEEEEEE
Confidence 998766555 245678999999999863
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-12 Score=104.16 Aligned_cols=130 Identities=15% Similarity=0.158 Sum_probs=95.2
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHH-hcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEIL-KDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~-~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...++.+|||+|||+|..+..++.... .+++++|+|+.+++.++++.. ....++ .+...|+.+... . ++||+|+
T Consensus 105 ~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i-~~~~~d~~~~~~-~--~~fD~Iv 180 (275)
T PRK09328 105 LLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARV-EFLQGDWFEPLP-G--GRFDLIV 180 (275)
T ss_pred cccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcE-EEEEccccCcCC-C--CceeEEE
Confidence 445678999999999999999987763 389999999999999999987 222456 888888855432 2 3799999
Q ss_pred echh------hhccC------------------HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHH
Q psy8370 156 IQWV------LMFIL------------------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLP 211 (256)
Q Consensus 156 ~~~~------l~~~~------------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 211 (256)
++-- ++.+. .+....+++++.+.|+|||.+++... ....+
T Consensus 181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g----------------~~~~~ 244 (275)
T PRK09328 181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG----------------YDQGE 244 (275)
T ss_pred ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC----------------chHHH
Confidence 8521 11110 02346788999999999999998421 01235
Q ss_pred HHHHHHHhcCCcEEEe
Q psy8370 212 QFCLLFSKANLKCVKS 227 (256)
Q Consensus 212 ~~~~~l~~~gf~~~~~ 227 (256)
++.+++.+.||..+..
T Consensus 245 ~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 245 AVRALLAAAGFADVET 260 (275)
T ss_pred HHHHHHHhCCCceeEE
Confidence 6888999999985554
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-12 Score=110.51 Aligned_cols=157 Identities=13% Similarity=0.159 Sum_probs=109.8
Q ss_pred hHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccC
Q psy8370 65 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFK 143 (256)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~ 143 (256)
...++..++ ......++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|+++....+ .++ .+..+|+.+..
T Consensus 282 ~e~l~~~vl-~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v-~~~~~d~~~~l 358 (443)
T PRK13168 282 NQKMVARAL-EWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNV-TFYHANLEEDF 358 (443)
T ss_pred HHHHHHHHH-HHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCce-EEEEeChHHhh
Confidence 344455454 44455677899999999999999998776 489999999999999999987655 356 89999987643
Q ss_pred CC--CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcC
Q psy8370 144 PE--DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 221 (256)
Q Consensus 144 ~~--~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 221 (256)
.. ...++||+|+++---. .....++.+.+ ++|++.++++.+..... .++ ..|.+.|
T Consensus 359 ~~~~~~~~~fD~Vi~dPPr~-----g~~~~~~~l~~-~~~~~ivyvSCnp~tla---------------RDl-~~L~~~g 416 (443)
T PRK13168 359 TDQPWALGGFDKVLLDPPRA-----GAAEVMQALAK-LGPKRIVYVSCNPATLA---------------RDA-GVLVEAG 416 (443)
T ss_pred hhhhhhcCCCCEEEECcCCc-----ChHHHHHHHHh-cCCCeEEEEEeChHHhh---------------ccH-HHHhhCC
Confidence 21 0013799999862211 12244555554 68999999985443332 122 3455789
Q ss_pred CcEEEeeeecCCCCcceeeeEEEec
Q psy8370 222 LKCVKSEKVTGMPKSLFKIYMFALK 246 (256)
Q Consensus 222 f~~~~~~~~~~~~~~~~~~~~~~l~ 246 (256)
|++.+......+|.+.+-..+..|+
T Consensus 417 Y~l~~i~~~DmFP~T~HvE~v~lL~ 441 (443)
T PRK13168 417 YRLKRAGMLDMFPHTGHVESMALFE 441 (443)
T ss_pred cEEEEEEEeccCCCCCcEEEEEEEE
Confidence 9999999888888877766665553
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6e-13 Score=103.89 Aligned_cols=129 Identities=19% Similarity=0.168 Sum_probs=95.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
....+|||+|||+|.++..++.+. ..+|+++|+++.+++.+++++. ++ .++.+|+.++... . +||+|+++-
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~----~v-~~v~~D~~e~~~~-~--kFDlIIsNP 134 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP----EA-EWITSDVFEFESN-E--KFDVVISNP 134 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc----CC-EEEECchhhhccc-C--CCcEEEEcC
Confidence 345799999999999998887654 3489999999999999988642 45 8899999887532 3 799999987
Q ss_pred hhhccCHHH------------------HHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhc
Q psy8370 159 VLMFILDED------------------IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA 220 (256)
Q Consensus 159 ~l~~~~~~~------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (256)
-+.+.+..+ +.+++.....+|+|+|.+++.-...+. + .-..++++++++++++
T Consensus 135 PF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~----y-----~~sl~~~~y~~~l~~~ 205 (279)
T PHA03411 135 PFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPY----Y-----DGTMKSNKYLKWSKQT 205 (279)
T ss_pred CccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccc----c-----cccCCHHHHHHHHHhc
Confidence 666654321 245667778888999977775111100 0 1125789999999999
Q ss_pred CCcEE
Q psy8370 221 NLKCV 225 (256)
Q Consensus 221 gf~~~ 225 (256)
||...
T Consensus 206 g~~~~ 210 (279)
T PHA03411 206 GLVTY 210 (279)
T ss_pred CcEec
Confidence 99764
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-12 Score=103.90 Aligned_cols=125 Identities=16% Similarity=0.219 Sum_probs=92.3
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
..+|||+|||+|.++..++.... .+|+++|+|+.+++.|+++....+ .++ .++.+|+.+..+ .. +||+|+++-
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i-~~~~~D~~~~l~-~~--~fDlIvsNP 209 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRV-TLIESDLFAALP-GR--RYDLIVSNP 209 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcE-EEEECchhhhCC-CC--CccEEEECC
Confidence 36899999999999999987653 389999999999999999988765 357 899999865433 23 799999861
Q ss_pred ------hh-------hccCH----------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHH
Q psy8370 159 ------VL-------MFILD----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL 215 (256)
Q Consensus 159 ------~l-------~~~~~----------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (256)
.+ .+.|. +....+++.+.+.|+|||.+++... .+.+++..
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g-----------------~~~~~~~~ 272 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG-----------------NSRVHLEE 272 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC-----------------cCHHHHHH
Confidence 11 11111 2346789999999999999998421 11245777
Q ss_pred HHHhcCCcEEEe
Q psy8370 216 LFSKANLKCVKS 227 (256)
Q Consensus 216 ~l~~~gf~~~~~ 227 (256)
++.+.||.....
T Consensus 273 ~~~~~~~~~~~~ 284 (307)
T PRK11805 273 AYPDVPFTWLEF 284 (307)
T ss_pred HHhhCCCEEEEe
Confidence 888888766443
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-12 Score=100.31 Aligned_cols=129 Identities=15% Similarity=0.173 Sum_probs=93.2
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech-
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW- 158 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~- 158 (256)
.+.+|||+|||+|.++..++.... .+++++|+|+.+++.++++....+ + .++.+|+.+.......++||+|+++-
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~-~~~~~D~~~~l~~~~~~~fDlVv~NPP 162 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--G-TVHEGDLYDALPTALRGRVDILAANAP 162 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--C-EEEEeechhhcchhcCCCEeEEEECCC
Confidence 346899999999999999876543 389999999999999999987643 4 78888887644321113799999872
Q ss_pred -----hhhccCH------------------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHH
Q psy8370 159 -----VLMFILD------------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL 215 (256)
Q Consensus 159 -----~l~~~~~------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (256)
.+..+++ +-...+++.+.+.|+|||.+++.... ....++..
T Consensus 163 y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~----------------~~~~~v~~ 226 (251)
T TIGR03704 163 YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE----------------RQAPLAVE 226 (251)
T ss_pred CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----------------chHHHHHH
Confidence 1122211 12457888889999999999986211 12457888
Q ss_pred HHHhcCCcEEEee
Q psy8370 216 LFSKANLKCVKSE 228 (256)
Q Consensus 216 ~l~~~gf~~~~~~ 228 (256)
+++++||......
T Consensus 227 ~l~~~g~~~~~~~ 239 (251)
T TIGR03704 227 AFARAGLIARVAS 239 (251)
T ss_pred HHHHCCCCceeeE
Confidence 9999999776544
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.8e-13 Score=98.26 Aligned_cols=104 Identities=19% Similarity=0.156 Sum_probs=88.4
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeE
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
+...+.++.+|||||||+|+.+..|++... +|+.+|..+...+.|++++...+. ++ .+.++|-...-+... +||.
T Consensus 66 ~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV-~v~~gDG~~G~~~~a--PyD~ 141 (209)
T COG2518 66 QLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENV-TVRHGDGSKGWPEEA--PYDR 141 (209)
T ss_pred HHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCce-EEEECCcccCCCCCC--CcCE
Confidence 444688999999999999999999977665 999999999999999999998873 67 899999877666555 8999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
|+.......+|.. +.+.|++||.+++...
T Consensus 142 I~Vtaaa~~vP~~--------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 142 IIVTAAAPEVPEA--------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEEeeccCCCCHH--------HHHhcccCCEEEEEEc
Confidence 9999988888643 5678899999999643
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-13 Score=99.60 Aligned_cols=117 Identities=14% Similarity=0.061 Sum_probs=88.2
Q ss_pred EEEeCCHHHHHHHHHHHHhcC----CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCc
Q psy8370 108 DLLEQSSKFIEQAKEEILKDC----DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNG 183 (256)
Q Consensus 108 ~~vD~s~~~~~~a~~~~~~~~----~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG 183 (256)
+|+|+|+.|++.|+++.+... .++ .++++|+.+++..++ +||+|++..++++++ +...++++++++|||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i-~~~~~d~~~lp~~~~--~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCI-EWIEGDAIDLPFDDC--EFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCce-EEEEechhhCCCCCC--CeeEEEecchhhcCC--CHHHHHHHHHHHcCcCe
Confidence 489999999999987765321 356 899999999877665 899999999999994 56789999999999999
Q ss_pred EEEEEecccCCCCc--------------c---ccCCCCce---------eeCHHHHHHHHHhcCCcEEEeee
Q psy8370 184 IIIIKDNVASGVKN--------------E---YDDEDSSV---------VRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 184 ~l~i~~~~~~~~~~--------------~---~~~~~~~~---------~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
.+++.+........ . .......+ ..+++++.++++++||+.+....
T Consensus 76 ~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~ 147 (160)
T PLN02232 76 RVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYE 147 (160)
T ss_pred EEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEE
Confidence 99998765432110 0 00001111 24889999999999999876553
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-12 Score=98.55 Aligned_cols=97 Identities=16% Similarity=0.153 Sum_probs=72.8
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC--------CCCCC
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK--------PEDLN 148 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~--------~~~~~ 148 (256)
..++.+|||||||+|.++..+++... ..|+++|+++ +. .. .++ .++++|+.+.. ...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~--------~~-~~v-~~i~~D~~~~~~~~~i~~~~~~-- 115 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD--------PI-VGV-DFLQGDFRDELVLKALLERVGD-- 115 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc--------CC-CCc-EEEecCCCChHHHHHHHHHhCC--
Confidence 46678999999999999999888753 3899999988 21 11 246 88999988753 223
Q ss_pred CceeEEEechhhhccCHH---------HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 149 IKYDVIWIQWVLMFILDE---------DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~---------~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
++||+|+++.+.++.... ....+++.+.++|+|||.+++.
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 379999998665544221 1246899999999999999995
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.3e-12 Score=102.10 Aligned_cols=126 Identities=18% Similarity=0.178 Sum_probs=92.3
Q ss_pred CeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEccccccCCCCCCCceeEEEec--
Q psy8370 83 TRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCD--KLDKCYNVGIQDFKPEDLNIKYDVIWIQ-- 157 (256)
Q Consensus 83 ~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~--~i~~~~~~d~~~~~~~~~~~~~D~V~~~-- 157 (256)
.+|||+|||+|.++..++.... .+++++|+|+.+++.++++....+. ++ .++.+|+.+..+ .. +||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v-~~~~~d~~~~~~-~~--~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRV-EFIQSNLFEPLA-GQ--KIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-EEEECchhccCc-CC--CccEEEECCC
Confidence 6999999999999999987654 3899999999999999999886652 36 889999876432 22 69999986
Q ss_pred -----------hhhhccCH----------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHH
Q psy8370 158 -----------WVLMFILD----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLL 216 (256)
Q Consensus 158 -----------~~l~~~~~----------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (256)
.+..|-|. .....+++.+.+.|+|||.+++.... ...+.+.++
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~----------------~q~~~~~~~ 255 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN----------------WQQKSLKEL 255 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc----------------cHHHHHHHH
Confidence 12222221 24667899999999999999985211 112456677
Q ss_pred HH-hcCCcEEEee
Q psy8370 217 FS-KANLKCVKSE 228 (256)
Q Consensus 217 l~-~~gf~~~~~~ 228 (256)
+. ..||..+...
T Consensus 256 ~~~~~~~~~~~~~ 268 (284)
T TIGR00536 256 LRIKFTWYDVENG 268 (284)
T ss_pred HHhcCCCceeEEe
Confidence 77 4688655543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-12 Score=116.03 Aligned_cols=142 Identities=14% Similarity=0.132 Sum_probs=103.3
Q ss_pred chhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC---CcceEEEc
Q psy8370 61 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD---KLDKCYNV 137 (256)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~i~~~~~~ 137 (256)
|.+..++++..+. ++.+|||+|||+|.++..++..|..+|++||+|+.+++.+++++...+. ++ .++.+
T Consensus 525 Dqr~~R~~~~~~~-------~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v-~~i~~ 596 (702)
T PRK11783 525 DHRPTRRMIGQMA-------KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQH-RLIQA 596 (702)
T ss_pred HHHHHHHHHHHhc-------CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccce-EEEEc
Confidence 3444455554444 4689999999999999999887777899999999999999999986652 46 89999
Q ss_pred cccccCCCCCCCceeEEEech-----------hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCce
Q psy8370 138 GIQDFKPEDLNIKYDVIWIQW-----------VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSV 206 (256)
Q Consensus 138 d~~~~~~~~~~~~~D~V~~~~-----------~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 206 (256)
|+.++..... ++||+|++.- ..... .....++..+.++|+|||.+++.......
T Consensus 597 D~~~~l~~~~-~~fDlIilDPP~f~~~~~~~~~~~~~--~~y~~l~~~a~~lL~~gG~l~~~~~~~~~------------ 661 (702)
T PRK11783 597 DCLAWLKEAR-EQFDLIFIDPPTFSNSKRMEDSFDVQ--RDHVALIKDAKRLLRPGGTLYFSNNKRGF------------ 661 (702)
T ss_pred cHHHHHHHcC-CCcCEEEECCCCCCCCCccchhhhHH--HHHHHHHHHHHHHcCCCCEEEEEeCCccC------------
Confidence 9877542212 3799999861 11111 34567889999999999999886322111
Q ss_pred eeCHHHHHHHHHhcCCcEEEeee
Q psy8370 207 VRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 207 ~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
....+.+.++|+.+.....
T Consensus 662 ----~~~~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 662 ----KMDEEGLAKLGLKAEEITA 680 (702)
T ss_pred ----ChhHHHHHhCCCeEEEEec
Confidence 1126778889998887664
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=107.34 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=84.3
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
...+..+||||||+|.++..++...+. .++|+|+++.+++.+.++....+ .++ .++.+|+..+......+++|.|++
T Consensus 120 ~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV-~~i~~DA~~ll~~~~~~s~D~I~l 198 (390)
T PRK14121 120 KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNL-LIINYDARLLLELLPSNSVEKIFV 198 (390)
T ss_pred CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcE-EEEECCHHHhhhhCCCCceeEEEE
Confidence 455679999999999999999887644 89999999999999999887765 466 889999876532111248999998
Q ss_pred chhhhccCHH----HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 157 QWVLMFILDE----DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 157 ~~~l~~~~~~----~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+....+.... ....+++.++++|+|||.+.+.
T Consensus 199 nFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 199 HFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred eCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 7543322111 1257999999999999999996
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.8e-13 Score=106.38 Aligned_cols=107 Identities=23% Similarity=0.323 Sum_probs=82.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhc------CCCcceEEEccccccCCCCCCCcee
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKD------CDKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~------~~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
+++.+||+||||+|..+..+++. +..+|++||+++.+++.|++.+... ..++ +++.+|...+..... ++||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv-~v~~~Da~~~l~~~~-~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRV-ELVIGDGIKFVAETE-NSFD 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCce-EEEECchHHHHhhCC-Cccc
Confidence 45789999999999999998876 4568999999999999999988632 2467 889999877654322 4899
Q ss_pred EEEechhhhccCHHH--HHHHHHHHhhhcCCCcEEEEE
Q psy8370 153 VIWIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+|++...-...+... ...+++.+++.|+|||.+++.
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999975433222211 256889999999999998874
|
|
| >KOG3010|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-13 Score=101.85 Aligned_cols=101 Identities=19% Similarity=0.244 Sum_probs=75.6
Q ss_pred eEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechhhh
Q psy8370 84 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 161 (256)
Q Consensus 84 ~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~ 161 (256)
.++|+|||+|..++.++. .+++|+|+|+|+.|++.+++..+..- ... .+...+..++.-.+. +.|+|++...+|
T Consensus 36 ~a~DvG~G~Gqa~~~iae-~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~-~ms~~~~v~L~g~e~--SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAE-HYKEVIATDVSEAMLKVAKKHPPVTYCHTPS-TMSSDEMVDLLGGEE--SVDLITAAQAVH 111 (261)
T ss_pred eEEEeccCCCcchHHHHH-hhhhheeecCCHHHHHHhhcCCCcccccCCc-cccccccccccCCCc--ceeeehhhhhHH
Confidence 899999999977777654 47799999999999999988754321 112 334444445544444 999999999999
Q ss_pred ccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 162 FILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 162 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
+. ++..+.+.++|+|+++|-++..-+.
T Consensus 112 WF---dle~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 112 WF---DLERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred hh---chHHHHHHHHHHcCCCCCEEEEEEc
Confidence 99 5678999999999988855555333
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.7e-13 Score=100.19 Aligned_cols=110 Identities=15% Similarity=0.169 Sum_probs=82.5
Q ss_pred HHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCC
Q psy8370 68 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKP 144 (256)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~ 144 (256)
....++ +.....++.+|||||||+|+.+..++....+ .|+++|.++...+.|++++...+. ++ .+..+|.....+
T Consensus 60 ~~a~~l-~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv-~~~~gdg~~g~~ 137 (209)
T PF01135_consen 60 MVARML-EALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNV-EVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHH-HHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSE-EEEES-GGGTTG
T ss_pred HHHHHH-HHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCce-eEEEcchhhccc
Confidence 344444 4556889999999999999999998776432 699999999999999999997663 56 889999876655
Q ss_pred CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
... +||.|++......+|. .+.+.|++||.+++.-
T Consensus 138 ~~a--pfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 138 EEA--PFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GG---SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEE
T ss_pred cCC--CcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEE
Confidence 555 8999999988776642 2667899999999853
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >KOG1541|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.2e-12 Score=94.88 Aligned_cols=100 Identities=14% Similarity=0.168 Sum_probs=79.6
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc-CCCCCCCceeEEEechh
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF-KPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~-~~~~~~~~~D~V~~~~~ 159 (256)
.+.-|||||||+|..+..+...|. ..+|+|+|+.|++.|.+. .-++ .++.+|+-+. ++.++ .||.|++...
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~-e~eg----dlil~DMG~GlpfrpG--tFDg~ISISA 121 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVER-ELEG----DLILCDMGEGLPFRPG--TFDGVISISA 121 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHh-hhhc----CeeeeecCCCCCCCCC--ccceEEEeee
Confidence 588999999999999999988885 899999999999999873 2223 6788888654 44444 9999998866
Q ss_pred hhcc---------CHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 160 LMFI---------LDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 160 l~~~---------~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
++++ |...+..++..++.+|++|+..++.
T Consensus 122 vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 122 VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 5543 3345667888999999999999985
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-12 Score=105.85 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=80.9
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC---CcceEEEccccccCCC--CCCCceeEEE
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD---KLDKCYNVGIQDFKPE--DLNIKYDVIW 155 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~i~~~~~~d~~~~~~~--~~~~~~D~V~ 155 (256)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.+++++...+. ++ .++.+|+.+.... ...++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v-~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKA-EFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcE-EEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4789999999999999887666666999999999999999999987652 46 8999999876421 1113799999
Q ss_pred echhhh-----ccCH--HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 156 IQWVLM-----FILD--EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 156 ~~~~l~-----~~~~--~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
++--.. .+.. .....+++.+.++|+|||.+++.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 872110 0000 23556777889999999999975
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.5e-12 Score=103.34 Aligned_cols=104 Identities=20% Similarity=0.117 Sum_probs=80.9
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCce
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
+.....++.+|||||||+|.++..++.... ..|+++|+++.+++.|++++...+ .++ .++.+|..+..+... +|
T Consensus 74 ~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV-~~i~gD~~~~~~~~~--~f 150 (322)
T PRK13943 74 EWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENV-IFVCGDGYYGVPEFA--PY 150 (322)
T ss_pred HhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcE-EEEeCChhhcccccC--Cc
Confidence 334567789999999999999999877543 269999999999999999887665 346 788888876655444 79
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|+|++......++ ..+.+.|+|||.+++..
T Consensus 151 D~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 151 DVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 9999986655442 23567899999988853
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=8e-12 Score=101.98 Aligned_cols=141 Identities=13% Similarity=0.055 Sum_probs=100.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.++.+|||+|||+|.++..++..+. +|+|+|+++.+++.++++....+ .++ +++.+|+.++..... +.||+|+++-
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l~~v-~~~~~D~~~~~~~~~-~~~D~Vv~dP 248 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGLTNV-QFQALDSTQFATAQG-EVPDLVLVNP 248 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCce-EEEEcCHHHHHHhcC-CCCeEEEECC
Confidence 3568999999999999999988764 99999999999999999987765 356 899999987654221 2699999872
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCcce
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLF 238 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~ 238 (256)
- .......+.+....++|++.++++.+..... .++..+ .||++........+|.+.+
T Consensus 249 P-----r~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~---------------rd~~~l---~~y~~~~~~~~DmFP~T~H 305 (315)
T PRK03522 249 P-----RRGIGKELCDYLSQMAPRFILYSSCNAQTMA---------------KDLAHL---PGYRIERVQLFDMFPHTAH 305 (315)
T ss_pred C-----CCCccHHHHHHHHHcCCCeEEEEECCcccch---------------hHHhhc---cCcEEEEEEEeccCCCCCe
Confidence 2 1111122223334468888888874333221 233333 5999999888888888777
Q ss_pred eeeEEEec
Q psy8370 239 KIYMFALK 246 (256)
Q Consensus 239 ~~~~~~l~ 246 (256)
-..+..++
T Consensus 306 vE~v~~l~ 313 (315)
T PRK03522 306 YEVLTLLV 313 (315)
T ss_pred EEEEEEEE
Confidence 66666554
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.5e-12 Score=85.99 Aligned_cols=101 Identities=24% Similarity=0.407 Sum_probs=81.0
Q ss_pred eEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCC-CCCCCceeEEEechhhh
Q psy8370 84 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKP-EDLNIKYDVIWIQWVLM 161 (256)
Q Consensus 84 ~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~-~~~~~~~D~V~~~~~l~ 161 (256)
+++|+|||.|..+..++.....+++++|+++.+++.+++...... .++ .+...|+.+... ... ++|+|++..+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNV-EVLKGDAEELPPEADE--SFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccce-EEEEcChhhhccccCC--ceEEEEEcccee
Confidence 589999999999999877444599999999999998885433222 345 888889887764 333 799999999988
Q ss_pred ccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 162 FILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 162 ~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+. .+....+++.+.+.|+|||.+++.
T Consensus 78 ~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 74 256678999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.8e-12 Score=102.95 Aligned_cols=108 Identities=20% Similarity=0.202 Sum_probs=78.1
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-------C---CcceEEEcccccc-----CCC
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-------D---KLDKCYNVGIQDF-----KPE 145 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~---~i~~~~~~d~~~~-----~~~ 145 (256)
++.+|||||||-|.-+.-+...+...++|+|+++..++.|++++.... . -...++.+|.... ...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 789999999998887776667777799999999999999999993211 1 1125566665422 111
Q ss_pred CCCCceeEEEechhhhcc--CHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 146 DLNIKYDVIWIQWVLMFI--LDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 146 ~~~~~~D~V~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
. ...||+|-|.+++|+. +.+....+|+.+.+.|+|||.|+.+.
T Consensus 142 ~-~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 142 R-SRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp T-TS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred c-CCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1 2489999999999988 55677789999999999999999974
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.2e-12 Score=99.44 Aligned_cols=110 Identities=27% Similarity=0.324 Sum_probs=89.3
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeE
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
......+..+|+|||+|+|.++..+++..+. +++.+|. |..++.+++ ..++ .+..+|+.+..| .+|+
T Consensus 94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv-~~~~gd~f~~~P-----~~D~ 161 (241)
T PF00891_consen 94 EAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRV-EFVPGDFFDPLP-----VADV 161 (241)
T ss_dssp HHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTE-EEEES-TTTCCS-----SESE
T ss_pred ccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----cccc-ccccccHHhhhc-----cccc
Confidence 4445677789999999999999999888765 8999999 778888887 3578 999999983322 3899
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCC--cEEEEEecccCCCC
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKN--GIIIIKDNVASGVK 196 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg--G~l~i~~~~~~~~~ 196 (256)
+++.+++|.+++++...+|+++++.|+|| |.|+|.+...+...
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~ 206 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDR 206 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSS
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCC
Confidence 99999999999999999999999999999 99999987665543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.9e-12 Score=97.99 Aligned_cols=126 Identities=17% Similarity=0.210 Sum_probs=92.2
Q ss_pred ccccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEE
Q psy8370 57 ISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCY 135 (256)
Q Consensus 57 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~ 135 (256)
++...+....++|-+.+ ......+|||+|||.|.++..+++..+. +++.+|+|..+++.++++...++.....++
T Consensus 138 FS~~~lD~GS~lLl~~l----~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~ 213 (300)
T COG2813 138 FSRDKLDKGSRLLLETL----PPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVW 213 (300)
T ss_pred CcCCCcChHHHHHHHhC----CccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEE
Confidence 44455555556666555 4555669999999999999999888754 999999999999999999987653221455
Q ss_pred EccccccCCCCCCCceeEEEechhhhcc---CHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 136 NVGIQDFKPEDLNIKYDVIWIQWVLMFI---LDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 136 ~~d~~~~~~~~~~~~~D~V~~~~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
..|..+... + +||+|+|+=-+|.= ...-..++++...+.|++||.|.++-+
T Consensus 214 ~s~~~~~v~--~--kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 214 ASNLYEPVE--G--KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred Eeccccccc--c--cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 666544332 2 79999999544422 112235799999999999999999854
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-11 Score=92.91 Aligned_cols=99 Identities=18% Similarity=0.161 Sum_probs=71.7
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC--------CCC
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK--------PED 146 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~--------~~~ 146 (256)
....++.+|||+|||+|.++..++.... .+++++|+|+.+ . . .++ .+...|+.+.. ...
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~-~-~~i-~~~~~d~~~~~~~~~l~~~~~~ 96 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P-I-ENV-DFIRGDFTDEEVLNKIRERVGD 96 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c-C-CCc-eEEEeeCCChhHHHHHHHHhCC
Confidence 3567889999999999999998877653 279999999864 1 1 245 77888876543 122
Q ss_pred CCCceeEEEechhh--------hccCH-HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 147 LNIKYDVIWIQWVL--------MFILD-EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 147 ~~~~~D~V~~~~~l--------~~~~~-~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
++||+|++.... ++... .....+++.++++|+|||.+++.
T Consensus 97 --~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 97 --DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred --CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 379999986431 22111 23467999999999999999985
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=100.63 Aligned_cols=150 Identities=15% Similarity=0.158 Sum_probs=98.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHH--H---h---cCCCcceEEEccccccCCCCCCCc
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEI--L---K---DCDKLDKCYNVGIQDFKPEDLNIK 150 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~--~---~---~~~~i~~~~~~d~~~~~~~~~~~~ 150 (256)
..+.+||+||||+|..+..+++.. ..+|++||+++.+++.|++.. . . ...++ +++.+|..++..... +.
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV-~vvi~Da~~fL~~~~-~~ 226 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRV-NVHVCDAKEFLSSPS-SL 226 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCce-EEEECcHHHHHHhcC-CC
Confidence 456799999999999999887754 359999999999999999731 1 1 12567 889999887654322 47
Q ss_pred eeEEEechhhh---ccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 151 YDVIWIQWVLM---FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 151 ~D~V~~~~~l~---~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
||+|++...-. ....---..+++.+++.|+|||.+++...... ........+.+.++++|+.+...
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~-----------~~~~~~~~i~~tL~~af~~v~~y 295 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA-----------DAPLVYWSIGNTIEHAGLTVKSY 295 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh-----------hhHHHHHHHHHHHHHhCCceEEE
Confidence 99999884211 11111124689999999999999987521100 00001133678889999988765
Q ss_pred eeecCCCCcceeeeE
Q psy8370 228 EKVTGMPKSLFKIYM 242 (256)
Q Consensus 228 ~~~~~~~~~~~~~~~ 242 (256)
..........|...+
T Consensus 296 ~t~vPsyg~~WgF~~ 310 (374)
T PRK01581 296 HTIVPSFGTDWGFHI 310 (374)
T ss_pred EEecCCCCCceEEEE
Confidence 544333333344443
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4e-12 Score=100.72 Aligned_cols=107 Identities=19% Similarity=0.333 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
.++.+|||||||+|.++..++..... ++++||+++.+++.|++.+.... .++ .++.+|..+...... ++||+|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv-~v~~~Da~~~l~~~~-~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERF-EVIEADGAEYIAVHR-HSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCce-EEEECCHHHHHHhCC-CCCCEEEE
Confidence 45689999999999999998776533 89999999999999999886432 467 889999876643222 37999998
Q ss_pred chhh-hccCHH-HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 157 QWVL-MFILDE-DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 157 ~~~l-~~~~~~-~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
...- ...+.. ....+++.+.+.|+|||.+++.
T Consensus 143 D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 143 DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 6321 112111 1257999999999999999984
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.9e-11 Score=101.88 Aligned_cols=136 Identities=14% Similarity=0.090 Sum_probs=96.6
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
...++.+|||+|||+|..+..+++... ..|+++|+++.+++.++++....+..+ .++.+|+.+.......++||.|++
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~-~~~~~D~~~~~~~~~~~~fD~Vl~ 319 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKA-TVIVGDARDPAQWWDGQPFDRILL 319 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEcCcccchhhcccCCCCEEEE
Confidence 456789999999999999999988764 389999999999999999998876566 788999876542111137999995
Q ss_pred chh------hh------c-cCHH-------HHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHH
Q psy8370 157 QWV------LM------F-ILDE-------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLL 216 (256)
Q Consensus 157 ~~~------l~------~-~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (256)
..- +. + .... ...++++.+.+.|||||.++.+....... .+.+.+...
T Consensus 320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~------------Ene~~v~~~ 387 (427)
T PRK10901 320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE------------ENEQQIKAF 387 (427)
T ss_pred CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh------------hCHHHHHHH
Confidence 421 11 1 1111 13468999999999999999864222111 234566677
Q ss_pred HHhc-CCcEEE
Q psy8370 217 FSKA-NLKCVK 226 (256)
Q Consensus 217 l~~~-gf~~~~ 226 (256)
++++ +|+++.
T Consensus 388 l~~~~~~~~~~ 398 (427)
T PRK10901 388 LARHPDAELLD 398 (427)
T ss_pred HHhCCCCEEec
Confidence 7665 576554
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.7e-12 Score=98.57 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=100.8
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-----------------------------C
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-----------------------------D 129 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----------------------------~ 129 (256)
..++.++||||||+-..-...+...+.+|+..|+++..++..++.+++.+ .
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 44577999999999766544444566699999999999887766542210 1
Q ss_pred CcceEEEccccccCCCCC----CCceeEEEechhhhccC--HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCC
Q psy8370 130 KLDKCYNVGIQDFKPEDL----NIKYDVIWIQWVLMFIL--DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDED 203 (256)
Q Consensus 130 ~i~~~~~~d~~~~~~~~~----~~~~D~V~~~~~l~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 203 (256)
.+..++.+|+.+.++... .++||+|++.+.++... .++..+.++++.++|||||.|++...........-....
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F 213 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKF 213 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEec
Confidence 243577889887765432 12599999999988773 378899999999999999999997654443322111112
Q ss_pred CceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 204 SSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 204 ~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
.....+.+.+++.++++||.+...+.
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ccccCCHHHHHHHHHHcCCEEEeccc
Confidence 23346899999999999999998774
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.7e-11 Score=95.90 Aligned_cols=124 Identities=19% Similarity=0.261 Sum_probs=90.7
Q ss_pred eEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEec--hh
Q psy8370 84 RVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ--WV 159 (256)
Q Consensus 84 ~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~--~~ 159 (256)
+|||||||+|..+..++..... +|+|+|+|+.+++.|+++....+ .++ .++..|+.+.. . ++||+|+++ ++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~-~~~~~dlf~~~--~--~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRV-LVVQSDLFEPL--R--GKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccE-EEEeeeccccc--C--CceeEEEeCCCCC
Confidence 8999999999999999887764 99999999999999999998876 344 34444544333 2 279999988 11
Q ss_pred hh---cc-C-----------------HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHH
Q psy8370 160 LM---FI-L-----------------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFS 218 (256)
Q Consensus 160 l~---~~-~-----------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 218 (256)
-. +. + .+-...++..+.+.|+|||.+++..... ..+.+.+++.
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~----------------q~~~v~~~~~ 251 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT----------------QGEAVKALFE 251 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC----------------cHHHHHHHHH
Confidence 10 01 0 0246778999999999999999852111 2467889999
Q ss_pred hcC-CcEEEee
Q psy8370 219 KAN-LKCVKSE 228 (256)
Q Consensus 219 ~~g-f~~~~~~ 228 (256)
+.| |..+...
T Consensus 252 ~~~~~~~v~~~ 262 (280)
T COG2890 252 DTGFFEIVETL 262 (280)
T ss_pred hcCCceEEEEE
Confidence 999 5544443
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-11 Score=105.52 Aligned_cols=128 Identities=20% Similarity=0.193 Sum_probs=93.4
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
++.+|||+|||+|.++..++.... .+++++|+|+.+++.|+++....+ .++ .++.+|+.+... .. +||+|+++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v-~~~~~D~~~~~~-~~--~fDlIvsN 213 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRI-QIIHSNWFENIE-KQ--KFDFIVSN 213 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccce-eeeecchhhhCc-CC--CccEEEEC
Confidence 346899999999999998876542 389999999999999999987654 356 788888765332 23 79999985
Q ss_pred h--------------hhhccCH----------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHH
Q psy8370 158 W--------------VLMFILD----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQF 213 (256)
Q Consensus 158 ~--------------~l~~~~~----------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (256)
- +..+-|. +....+++.+.+.|+|||.+++... ....+.+
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig----------------~~q~~~v 277 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG----------------FKQEEAV 277 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC----------------CchHHHH
Confidence 1 1111111 2345688899999999999988421 1124677
Q ss_pred HHHHHhcCCcEEEee
Q psy8370 214 CLLFSKANLKCVKSE 228 (256)
Q Consensus 214 ~~~l~~~gf~~~~~~ 228 (256)
.+++.+.||..+...
T Consensus 278 ~~~~~~~g~~~~~~~ 292 (506)
T PRK01544 278 TQIFLDHGYNIESVY 292 (506)
T ss_pred HHHHHhcCCCceEEE
Confidence 888999999876554
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.2e-11 Score=91.29 Aligned_cols=162 Identities=17% Similarity=0.163 Sum_probs=119.0
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCC-CCcee
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHF---DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDL-NIKYD 152 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~-~~~~D 152 (256)
....+.+||||.||.|+.....+.... .+|...|+|+..++..++..+..+ .+++.|.++|+.+...... ...++
T Consensus 132 ~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred hcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCC
Confidence 345788999999999998888766643 489999999999999999998877 3445899999877643221 23689
Q ss_pred EEEechhhhccCHHH-HHHHHHHHhhhcCCCcEEEEEecccCCCCc----cccCC--CCce---eeCHHHHHHHHHhcCC
Q psy8370 153 VIWIQWVLMFILDED-IIKFLNLCKQILNKNGIIIIKDNVASGVKN----EYDDE--DSSV---VRSLPQFCLLFSKANL 222 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----~~~~~--~~~~---~~~~~~~~~~l~~~gf 222 (256)
+++.+..++.+++.+ +...+..+++.+.|||.++.+.......-. .+... ...| .++..++.++++.+||
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF 291 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGF 291 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCC
Confidence 999999999998855 555899999999999999998544433221 11111 1123 3699999999999999
Q ss_pred cEEEeeeecCCCCcceeeeE
Q psy8370 223 KCVKSEKVTGMPKSLFKIYM 242 (256)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~ 242 (256)
+-+.... .+-..|.|.+
T Consensus 292 ~K~~q~I---D~~GIFTVSl 308 (311)
T PF12147_consen 292 EKIDQRI---DEWGIFTVSL 308 (311)
T ss_pred chhhhee---ccCCceEEEe
Confidence 8554332 2334566654
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.9e-11 Score=100.59 Aligned_cols=141 Identities=14% Similarity=0.134 Sum_probs=99.9
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEcccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDF 142 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~ 142 (256)
..++...+ ...++.+|||+|||+|..+..++... ...|+++|+++.+++.+++++...+ .++ .+.+.|..+.
T Consensus 241 s~l~~~~l----~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v-~~~~~D~~~~ 315 (434)
T PRK14901 241 AQLVAPLL----DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSI-KILAADSRNL 315 (434)
T ss_pred HHHHHHHh----CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeE-EEEeCChhhc
Confidence 34444444 56678999999999999999987763 2389999999999999999998776 356 8889998876
Q ss_pred CC----CCCCCceeEEEec------hhhhccCH-------HH-------HHHHHHHHhhhcCCCcEEEEEecccCCCCcc
Q psy8370 143 KP----EDLNIKYDVIWIQ------WVLMFILD-------ED-------IIKFLNLCKQILNKNGIIIIKDNVASGVKNE 198 (256)
Q Consensus 143 ~~----~~~~~~~D~V~~~------~~l~~~~~-------~~-------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 198 (256)
.. .. ++||.|++. .++.+.++ .+ ..++++++.+.|||||.++.++-.....
T Consensus 316 ~~~~~~~~--~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~--- 390 (434)
T PRK14901 316 LELKPQWR--GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA--- 390 (434)
T ss_pred cccccccc--ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh---
Confidence 52 22 379999974 23333221 11 3578999999999999998763211111
Q ss_pred ccCCCCceeeCHHHHHHHHHhc-CCcEE
Q psy8370 199 YDDEDSSVVRSLPQFCLLFSKA-NLKCV 225 (256)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~l~~~-gf~~~ 225 (256)
.+...+...++++ +|++.
T Consensus 391 ---------Ene~~v~~~l~~~~~~~~~ 409 (434)
T PRK14901 391 ---------ENEAQIEQFLARHPDWKLE 409 (434)
T ss_pred ---------hHHHHHHHHHHhCCCcEec
Confidence 1345677778776 57754
|
|
| >KOG2899|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-11 Score=92.01 Aligned_cols=176 Identities=15% Similarity=0.239 Sum_probs=108.4
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCC---Ccc---------------------
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCD---KLD--------------------- 132 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~---~i~--------------------- 132 (256)
....+..+|||||..|.++..++.. ++..+.|+||++..++.|++..+.... .+.
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 3467889999999999999999876 455899999999999999998753210 000
Q ss_pred -----------eEEEccc----cccCCCCCCCceeEEEechh--hhccC--HHHHHHHHHHHhhhcCCCcEEEEEecccC
Q psy8370 133 -----------KCYNVGI----QDFKPEDLNIKYDVIWIQWV--LMFIL--DEDIIKFLNLCKQILNKNGIIIIKDNVAS 193 (256)
Q Consensus 133 -----------~~~~~d~----~~~~~~~~~~~~D~V~~~~~--l~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 193 (256)
.+...+. .++. ......||+|+|..+ +-|++ ++.+..++.+++++|.|||+|++....+.
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWk 213 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWK 213 (288)
T ss_pred ccccccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchH
Confidence 0111000 0011 011247999998754 34443 37789999999999999999999754443
Q ss_pred CCCc------cccCCCCceeeCHHHHHHHHHhc--CCcEEEeee-ecCCCC--cceeeeEEEeccCCCCCCC
Q psy8370 194 GVKN------EYDDEDSSVVRSLPQFCLLFSKA--NLKCVKSEK-VTGMPK--SLFKIYMFALKPNKDKNSI 254 (256)
Q Consensus 194 ~~~~------~~~~~~~~~~~~~~~~~~~l~~~--gf~~~~~~~-~~~~~~--~~~~~~~~~l~~~~~~~~~ 254 (256)
.... .+..........++.+..++.+. ||+-++.-. .....+ -..++.+|..+.....+.|
T Consensus 214 sY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~~~~~~~skgf~R~i~~y~Kk~~~~~~~i 285 (288)
T KOG2899|consen 214 SYKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLGLIVSAASKGFDRPILLYRKKLHPKTDAI 285 (288)
T ss_pred HHHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeeccccccccccCccccceeeeeeccCCCccCcC
Confidence 3221 12222333446788888887765 565443222 122222 2335556655444444443
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=96.23 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=86.1
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQD 141 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~ 141 (256)
.+++..+. ...++.+|||+|||+|..+..++... ..+++++|+++++.+.|++++...+ .++ +++.+|+.+
T Consensus 57 g~~L~~l~----~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i-~~~~gda~~ 131 (234)
T PLN02781 57 GLFLSMLV----KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKI-NFIQSDALS 131 (234)
T ss_pred HHHHHHHH----HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-EEEEccHHH
Confidence 35555555 34568899999999999888886642 2389999999999999999998766 356 889999876
Q ss_pred cCCC----CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 142 FKPE----DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 142 ~~~~----~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
..+. ...++||+|++...- +....+++.+.+.|+|||.+++.+
T Consensus 132 ~L~~l~~~~~~~~fD~VfiDa~k-----~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 132 ALDQLLNNDPKPEFDFAFVDADK-----PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred HHHHHHhCCCCCCCCEEEECCCH-----HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 5321 101379999986432 344578899999999999888754
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=91.67 Aligned_cols=104 Identities=15% Similarity=0.236 Sum_probs=76.9
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
....++.+|||||||+|.++..++.++ .+++++|+++.+++.+++++... .++ +++.+|+.++..... .||.|++
T Consensus 9 ~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~-~~v-~ii~~D~~~~~~~~~--~~d~vi~ 83 (169)
T smart00650 9 ANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAA-DNL-TVIHGDALKFDLPKL--QPYKVVG 83 (169)
T ss_pred cCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccC-CCE-EEEECchhcCCcccc--CCCEEEE
Confidence 346677899999999999999998875 48999999999999999887642 367 899999998876544 6999988
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+--++ +..+.+.++++.. .+.++|.+++.
T Consensus 84 n~Py~-~~~~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 84 NLPYN-ISTPILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred CCCcc-cHHHHHHHHHhcC--CCcceEEEEEE
Confidence 74433 3223333333321 23477888775
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-10 Score=93.87 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=81.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc-----CCCcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
+.+++||+||||.|..+..+++.. ..+|+.||+++.+++.+++.+... ..++ +++.+|..........+.||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv-~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRV-NLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCce-EEEEChHHHHHhhccCCCCCE
Confidence 557899999999999999997653 348999999999999999988642 2467 899999866543211137999
Q ss_pred EEechhhhccCHH--HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILDE--DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|++...-...+.. --..+++.+++.|+|||.++..
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9986543222211 1246899999999999999763
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-10 Score=91.26 Aligned_cols=147 Identities=20% Similarity=0.189 Sum_probs=105.2
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh--------------------------------
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK-------------------------------- 126 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------------------------- 126 (256)
...+.+||--|||.|+++..++..|+ .+.|.|.|--|+-..+-.+..
T Consensus 54 ~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 54 DRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 35568999999999999999999999 899999999886554433210
Q ss_pred ---------cCCCcceEEEccccccCCCC-CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCC
Q psy8370 127 ---------DCDKLDKCYNVGIQDFKPED-LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK 196 (256)
Q Consensus 127 ---------~~~~i~~~~~~d~~~~~~~~-~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 196 (256)
...++ ....+|+.+..... ..++||+|+..+.+.-. ..+...++.+.++|||||..+=..+..-...
T Consensus 133 Dv~p~~~~~~~~~~-sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~ 209 (270)
T PF07942_consen 133 DVDPSSELPSPSNL-SMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWINFGPLLYHFE 209 (270)
T ss_pred CcCcccccCCCCce-eEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEEecCCccccCC
Confidence 01223 55566666665443 12489999999777765 6778999999999999997775433222221
Q ss_pred ccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 197 NEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
..-.....+...+.+|+..+.+..||+++..+.
T Consensus 210 ~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 210 PMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 110112234778999999999999999987665
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG3045|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-11 Score=91.46 Aligned_cols=135 Identities=16% Similarity=0.287 Sum_probs=100.4
Q ss_pred hHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC
Q psy8370 65 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 144 (256)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~ 144 (256)
...+++.+- ..+....|.|+|||.+.++. .....|+.+|+-+. +- .+..+|+.+.+.
T Consensus 168 ld~ii~~ik----~r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~--------------~~-~V~~cDm~~vPl 224 (325)
T KOG3045|consen 168 LDVIIRKIK----RRPKNIVIADFGCGEAKIAS----SERHKVHSFDLVAV--------------NE-RVIACDMRNVPL 224 (325)
T ss_pred HHHHHHHHH----hCcCceEEEecccchhhhhh----ccccceeeeeeecC--------------CC-ceeeccccCCcC
Confidence 345566555 34677889999999998876 22348999998542 22 678999999888
Q ss_pred CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcE
Q psy8370 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
++. +.|+++++.+++-. ++..+++++.|+|++||.++|.+..... -+...+.+.+...||.+
T Consensus 225 ~d~--svDvaV~CLSLMgt---n~~df~kEa~RiLk~gG~l~IAEv~SRf-------------~dv~~f~r~l~~lGF~~ 286 (325)
T KOG3045|consen 225 EDE--SVDVAVFCLSLMGT---NLADFIKEANRILKPGGLLYIAEVKSRF-------------SDVKGFVRALTKLGFDV 286 (325)
T ss_pred ccC--cccEEEeeHhhhcc---cHHHHHHHHHHHhccCceEEEEehhhhc-------------ccHHHHHHHHHHcCCee
Confidence 777 99999999887766 4567999999999999999997532222 24567889999999998
Q ss_pred EEeeeecCCCCcceeeeEEE
Q psy8370 225 VKSEKVTGMPKSLFKIYMFA 244 (256)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~ 244 (256)
..... ..+.|..+.+.
T Consensus 287 ~~~d~----~n~~F~lfefk 302 (325)
T KOG3045|consen 287 KHKDV----SNKYFTLFEFK 302 (325)
T ss_pred eehhh----hcceEEEEEEe
Confidence 76553 34555555555
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.2e-11 Score=105.61 Aligned_cols=131 Identities=17% Similarity=0.178 Sum_probs=92.1
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHH--HHhc------CCCcceEEEccccccCCCCCCCc
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEE--ILKD------CDKLDKCYNVGIQDFKPEDLNIK 150 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~--~~~~------~~~i~~~~~~d~~~~~~~~~~~~ 150 (256)
+++++|||||||+|..+..+++... .+++++|+++++++.++++ +... +.++ +++.+|..+...... ++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv-~vi~~Da~~~l~~~~-~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRV-TVVNDDAFNWLRKLA-EK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCce-EEEEChHHHHHHhCC-CC
Confidence 4578999999999999999887654 5999999999999999983 3221 1467 889999887643222 38
Q ss_pred eeEEEechhhhccCHH---HHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCc
Q psy8370 151 YDVIWIQWVLMFILDE---DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLK 223 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~ 223 (256)
||+|+++......+.. -...+++.+++.|+|||.+++..... ........++.+.+++.||.
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~-----------~~~~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP-----------YFAPKAFWSIEATLEAAGLA 438 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc-----------ccchHHHHHHHHHHHHcCCE
Confidence 9999998443222110 12358899999999999999852100 00011235678889999993
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-10 Score=82.92 Aligned_cols=125 Identities=16% Similarity=0.123 Sum_probs=89.4
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..-.+.+|+|+|||||.++..++..|+.+|++||+++++++.++++......++ .+..+|+.+.. +.+|.|+++
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v-~f~~~dv~~~~-----~~~dtvimN 115 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDV-EFVVADVSDFR-----GKFDTVIMN 115 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCce-EEEEcchhhcC-----CccceEEEC
Confidence 445678899999999999999999998899999999999999999998766678 99999998874 268999887
Q ss_pred hhhhcc-CHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 158 WVLMFI-LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 158 ~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
=-+-.. ...++ .++..+.+.- -.++-. ... -+.+.+.+....+|+.+....
T Consensus 116 PPFG~~~rhaDr-~Fl~~Ale~s---~vVYsi-----------H~a-----~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 116 PPFGSQRRHADR-PFLLKALEIS---DVVYSI-----------HKA-----GSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred CCCccccccCCH-HHHHHHHHhh---heEEEe-----------ecc-----ccHHHHHHHHHhcCCeEEEEE
Confidence 222111 11222 3444444332 122211 100 156778889999999888664
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-10 Score=98.60 Aligned_cols=132 Identities=14% Similarity=0.180 Sum_probs=92.9
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
...++.+|||+|||+|..+..+++.. ...|+++|+++.+++.+++++...+. ++ .+...|+..+.+ .. +||.|
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v-~~~~~Da~~~~~-~~--~fD~V 322 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITII-ETIEGDARSFSP-EE--QPDAI 322 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeE-EEEeCccccccc-CC--CCCEE
Confidence 45677899999999999988877642 23899999999999999999987663 45 888999887653 23 79999
Q ss_pred Eec------hhhh-------ccCHHH-------HHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHH
Q psy8370 155 WIQ------WVLM-------FILDED-------IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFC 214 (256)
Q Consensus 155 ~~~------~~l~-------~~~~~~-------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (256)
++. .++. +..+++ ...++..+.+.|+|||.++.++...... -+...+.
T Consensus 323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~------------Ene~~v~ 390 (445)
T PRK14904 323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPE------------ENELQIE 390 (445)
T ss_pred EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh------------hHHHHHH
Confidence 963 1111 122221 2368999999999999999964222211 1234556
Q ss_pred HHHHhc-CCcEE
Q psy8370 215 LLFSKA-NLKCV 225 (256)
Q Consensus 215 ~~l~~~-gf~~~ 225 (256)
.+++.+ +|.+.
T Consensus 391 ~~l~~~~~~~~~ 402 (445)
T PRK14904 391 AFLQRHPEFSAE 402 (445)
T ss_pred HHHHhCCCCEEe
Confidence 667665 46544
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.8e-11 Score=90.18 Aligned_cols=117 Identities=18% Similarity=0.292 Sum_probs=91.1
Q ss_pred hhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEE-c
Q psy8370 63 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYN-V 137 (256)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~-~ 137 (256)
.+..+++..+. ...++++|||||++.|..+.+++..-. .+++.+|+++++.+.|+++++..+ .++ ..+. +
T Consensus 45 ~e~g~~L~~L~----~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i-~~~~~g 119 (219)
T COG4122 45 PETGALLRLLA----RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRI-ELLLGG 119 (219)
T ss_pred hhHHHHHHHHH----HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceE-EEEecC
Confidence 34556777776 456889999999999999999987654 289999999999999999999876 345 6666 4
Q ss_pred cccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 138 GIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 138 d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|..+.......++||+|+....-... ..+++.+.+.|+|||.+++-.
T Consensus 120 dal~~l~~~~~~~fDliFIDadK~~y-----p~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 120 DALDVLSRLLDGSFDLVFIDADKADY-----PEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred cHHHHHHhccCCCccEEEEeCChhhC-----HHHHHHHHHHhCCCcEEEEee
Confidence 77665443212589999998654433 579999999999999988743
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.1e-11 Score=95.16 Aligned_cols=107 Identities=23% Similarity=0.301 Sum_probs=79.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC-----CCcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDC-----DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-----~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
+.+.+||+||||+|..+..++... ..+++++|+++.+++.+++.+.... .++ +++.+|..+...... ++||+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v-~i~~~D~~~~l~~~~-~~yDv 148 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRV-DLQIDDGFKFLADTE-NTFDV 148 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCce-EEEECchHHHHHhCC-CCccE
Confidence 345699999999999999887765 4589999999999999999875431 345 677777765432211 37999
Q ss_pred EEechhhhccCHHH--HHHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|++......-+... ...+++.+++.|+|||.+++.
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 99875422221111 357889999999999999984
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-10 Score=98.23 Aligned_cols=144 Identities=15% Similarity=0.152 Sum_probs=97.8
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEcccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDF 142 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~ 142 (256)
..++...+ ...++.+|||+|||+|..+..++... ...|+++|+++.+++.+++++...+ .++ .+..+|+.+.
T Consensus 239 s~lv~~~l----~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v-~~~~~D~~~~ 313 (444)
T PRK14902 239 SMLVAPAL----DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNI-ETKALDARKV 313 (444)
T ss_pred HHHHHHHh----CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeE-EEEeCCcccc
Confidence 34455444 45677899999999999999988753 3389999999999999999998766 346 8899998776
Q ss_pred CCCCCCCceeEEEechh------hhcc-------CHHH-------HHHHHHHHhhhcCCCcEEEEEecccCCCCccccCC
Q psy8370 143 KPEDLNIKYDVIWIQWV------LMFI-------LDED-------IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDE 202 (256)
Q Consensus 143 ~~~~~~~~~D~V~~~~~------l~~~-------~~~~-------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 202 (256)
..... +.||+|++..- +.+. ...+ ...+++.+.+.|||||.++.+.......
T Consensus 314 ~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~------- 385 (444)
T PRK14902 314 HEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKE------- 385 (444)
T ss_pred cchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChh-------
Confidence 42111 37999997521 1111 1111 2458999999999999998752111110
Q ss_pred CCceeeCHHHHHHHHHhc-CCcEEEe
Q psy8370 203 DSSVVRSLPQFCLLFSKA-NLKCVKS 227 (256)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~-gf~~~~~ 227 (256)
-+...+...++++ +|+++..
T Consensus 386 -----Ene~vv~~~l~~~~~~~~~~~ 406 (444)
T PRK14902 386 -----ENEEVIEAFLEEHPEFELVPL 406 (444)
T ss_pred -----hhHHHHHHHHHhCCCcEEecc
Confidence 1334556667665 4776553
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-10 Score=96.00 Aligned_cols=140 Identities=12% Similarity=0.066 Sum_probs=99.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.++++....+ .++ .+..+|+.+...... ++||+|+++=
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~-~~~~~d~~~~~~~~~-~~~D~vi~DP 308 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNL-SFAALDSAKFATAQM-SAPELVLVNP 308 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcE-EEEECCHHHHHHhcC-CCCCEEEECC
Confidence 345799999999999999998766 489999999999999999987765 356 899999977653221 2699999872
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCcce
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLF 238 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~ 238 (256)
--..+ ...+++.+. .++|++.++++.+..... .++..+ .||++........+|.+.+
T Consensus 309 Pr~G~----~~~~l~~l~-~~~p~~ivyvsc~p~Tla---------------RDl~~L---~gy~l~~~~~~DmFPqT~H 365 (374)
T TIGR02085 309 PRRGI----GKELCDYLS-QMAPKFILYSSCNAQTMA---------------KDIAEL---SGYQIERVQLFDMFPHTSH 365 (374)
T ss_pred CCCCC----cHHHHHHHH-hcCCCeEEEEEeCHHHHH---------------HHHHHh---cCceEEEEEEeccCCCCCc
Confidence 21111 123445554 478999999874322221 333333 6999999888888887766
Q ss_pred eeeEEEe
Q psy8370 239 KIYMFAL 245 (256)
Q Consensus 239 ~~~~~~l 245 (256)
-..+..+
T Consensus 366 vE~v~ll 372 (374)
T TIGR02085 366 YEVLTLL 372 (374)
T ss_pred EEEEEEE
Confidence 6655544
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-11 Score=88.78 Aligned_cols=124 Identities=18% Similarity=0.131 Sum_probs=80.3
Q ss_pred hhhHHHHHHHHhcc------CCCCCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcC----CCc
Q psy8370 63 QTSNQFLSSLYCQK------KSDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDC----DKL 131 (256)
Q Consensus 63 ~~~~~~l~~~~~~~------~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~----~~i 131 (256)
+++...+.+++... .....+.+|||+|||+|..+..++.. +..+|+.+|.++ .++.++.+.+..+ .++
T Consensus 21 W~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v 99 (173)
T PF10294_consen 21 WPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRV 99 (173)
T ss_dssp --HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------
T ss_pred echHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccc
Confidence 34444555555332 34567899999999999999998887 556999999999 8999999887643 455
Q ss_pred ceEEEccccccC--CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 132 DKCYNVGIQDFK--PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 132 ~~~~~~d~~~~~--~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+...|+.+.. ......+||+|+..++++.- +....+++.+.++|+|+|.+++...
T Consensus 100 -~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 100 -SVRPLDWGDELDSDLLEPHSFDVILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp -EEEE--TTS-HHHHHHS-SSBSEEEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred -cCcEEEecCcccccccccccCCEEEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 66777765422 00112379999999999875 6677899999999999998877643
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG1975|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-11 Score=95.10 Aligned_cols=108 Identities=15% Similarity=0.080 Sum_probs=86.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-------CcceEEEcccccc-----CCCCC
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-------KLDKCYNVGIQDF-----KPEDL 147 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------~i~~~~~~d~~~~-----~~~~~ 147 (256)
++...++|+|||-|.-++.+-..|...++|+||++..++.|+++++.... .. .|+.+|-... ....+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a-~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTA-VFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhccccee-EEEEeccchhHHHHhccCCC
Confidence 67889999999999888887788888999999999999999999875421 23 6777775332 22222
Q ss_pred CCceeEEEechhhhcc--CHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 148 NIKYDVIWIQWVLMFI--LDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+||+|-|.+++|+- +.+....+|.++.+.|+|||++|-+.
T Consensus 195 -p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 195 -PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred -CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 259999999999876 44777889999999999999999873
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=92.58 Aligned_cols=109 Identities=18% Similarity=0.118 Sum_probs=82.5
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
...++.+|||+|||+|..+..+++... ..|+++|+++.+++.++++++..+ .++ .+...|...+..... .||.|
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v-~~~~~D~~~~~~~~~--~fD~V 144 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNV-AVTNFDGRVFGAAVP--KFDAI 144 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcE-EEecCCHHHhhhhcc--CCCEE
Confidence 456788999999999999998877532 389999999999999999998776 345 788888876654434 69999
Q ss_pred Eech------hhhc-------cCHH-------HHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 155 WIQW------VLMF-------ILDE-------DIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 155 ~~~~------~l~~-------~~~~-------~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
++.. ++.. ..+. ....+|+.+.+.|||||.++.+.
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9642 1111 1111 12459999999999999998763
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.9e-10 Score=96.61 Aligned_cols=142 Identities=13% Similarity=0.105 Sum_probs=95.6
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceE--EEcccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKC--YNVGIQDF 142 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~--~~~d~~~~ 142 (256)
..++...+ .+.++.+|||+|||+|..+..++.... .+|+++|+++.+++.+++++...+..+ .+ ..+|....
T Consensus 227 s~~~~~~L----~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~-~v~~~~~d~~~~ 301 (426)
T TIGR00563 227 AQWVATWL----APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTI-KAETKDGDGRGP 301 (426)
T ss_pred HHHHHHHh----CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeccccccc
Confidence 34555555 566789999999999999999877542 489999999999999999998766433 33 55565443
Q ss_pred CCCCCCCceeEEEec------hhhhccCH-------H-------HHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCC
Q psy8370 143 KPEDLNIKYDVIWIQ------WVLMFILD-------E-------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDE 202 (256)
Q Consensus 143 ~~~~~~~~~D~V~~~------~~l~~~~~-------~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 202 (256)
......++||.|++. .++.+.++ . ...++|+++.+.|||||.++.++......
T Consensus 302 ~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~------- 374 (426)
T TIGR00563 302 SQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE------- 374 (426)
T ss_pred cccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh-------
Confidence 321111379999964 23443322 1 13579999999999999999874322211
Q ss_pred CCceeeCHHHHHHHHHhc-CCcE
Q psy8370 203 DSSVVRSLPQFCLLFSKA-NLKC 224 (256)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~-gf~~ 224 (256)
-+...+..+++++ +|.+
T Consensus 375 -----Ene~~v~~~l~~~~~~~~ 392 (426)
T TIGR00563 375 -----ENSEQIKAFLQEHPDFPF 392 (426)
T ss_pred -----hCHHHHHHHHHhCCCCee
Confidence 2345566677765 4543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >KOG1499|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.8e-11 Score=95.15 Aligned_cols=110 Identities=24% Similarity=0.278 Sum_probs=87.0
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeE
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
++.....++.|||+|||+|.++.+.++.|+.+|++||-|.-+ +.|++.+..++ .++.+++.+.+++...+.. ++|+
T Consensus 54 ~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~e--KVDi 130 (346)
T KOG1499|consen 54 QNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVE--KVDI 130 (346)
T ss_pred cchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCcc--ceeE
Confidence 334467889999999999999999999999899999998766 88999888766 3444889999888865544 8999
Q ss_pred EEechhhhccCH-HHHHHHHHHHhhhcCCCcEEEE
Q psy8370 154 IWIQWVLMFILD-EDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 154 V~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i 187 (256)
|++-++-+.+-. ..+...|-.=-+-|+|||.++=
T Consensus 131 IvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 131 IVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred EeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 999988766632 4455555555788999998763
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.8e-11 Score=90.46 Aligned_cols=106 Identities=20% Similarity=0.293 Sum_probs=70.8
Q ss_pred CCCCeEEEEcCCCCH----hHHHHHHh---cC--C-eEEEEeCCHHHHHHHHHHH-------------------Hh----
Q psy8370 80 PGKTRVLDVGAGIGR----ISKYLLAK---HF--D-KIDLLEQSSKFIEQAKEEI-------------------LK---- 126 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~----~~~~l~~~---~~--~-~v~~vD~s~~~~~~a~~~~-------------------~~---- 126 (256)
.+.-+|+..||++|. ++..+.+. .. . +|+|+|+|+.+++.|++-. ..
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 367899999999996 33333331 12 2 8999999999999997631 00
Q ss_pred ------cCCCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 127 ------DCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 127 ------~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
....+ .|...|+.+..+..+ .||+|+|.+++-+++++...++++.+++.|+|||.|++.
T Consensus 110 ~~v~~~lr~~V-~F~~~NL~~~~~~~~--~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 110 YRVKPELRKMV-RFRRHNLLDPDPPFG--RFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TTE-HHHHTTE-EEEE--TT-S--------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eeEChHHcCce-EEEecccCCCCcccC--CccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 00245 788888888333334 799999999999999988899999999999999999996
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-10 Score=106.03 Aligned_cols=130 Identities=18% Similarity=0.242 Sum_probs=94.8
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC-----------------CCcceEEEccccccC
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC-----------------DKLDKCYNVGIQDFK 143 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~-----------------~~i~~~~~~d~~~~~ 143 (256)
+.+|||+|||+|..+..++.... .+++++|+|+.+++.|+++...++ .++ .++++|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV-~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRV-EFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccE-EEEECchhhhc
Confidence 46899999999999999987754 489999999999999999987532 246 88999987655
Q ss_pred CCCCCCceeEEEec--hh------------hhccC-------------------H---HHHHHHHHHHhhhcCCCcEEEE
Q psy8370 144 PEDLNIKYDVIWIQ--WV------------LMFIL-------------------D---EDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 144 ~~~~~~~~D~V~~~--~~------------l~~~~-------------------~---~~~~~~l~~~~~~LkpgG~l~i 187 (256)
...+ ..||+|+++ ++ ..+-| . +-..++++++.+.|+|||.+++
T Consensus 198 ~~~~-~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 198 RDNN-IELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred cccC-CceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 3211 269999987 11 11100 0 1246788899999999999998
Q ss_pred EecccCCCCccccCCCCceeeCHHHHH-HHHHhcCCcEEEeee
Q psy8370 188 KDNVASGVKNEYDDEDSSVVRSLPQFC-LLFSKANLKCVKSEK 229 (256)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~gf~~~~~~~ 229 (256)
.-.. ...+.+. +++++.||..+....
T Consensus 277 EiG~----------------~q~~~v~~~l~~~~gf~~~~~~~ 303 (1082)
T PLN02672 277 NMGG----------------RPGQAVCERLFERRGFRITKLWQ 303 (1082)
T ss_pred EECc----------------cHHHHHHHHHHHHCCCCeeEEee
Confidence 5211 1234677 599999998876554
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.6e-11 Score=99.90 Aligned_cols=148 Identities=14% Similarity=0.136 Sum_probs=98.6
Q ss_pred hHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccC
Q psy8370 65 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFK 143 (256)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~ 143 (256)
...++..+. ......++.+|||+|||+|.++..++... .+|+|+|+++.+++.+++++...+ .++ .++.+|+.+..
T Consensus 277 ~~~l~~~~~-~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv-~~~~~d~~~~l 353 (431)
T TIGR00479 277 NEKLVDRAL-EALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANV-EFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHH-HHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCce-EEEeCCHHHHH
Confidence 334444444 34455667899999999999999987654 489999999999999999987665 356 89999987643
Q ss_pred CC--CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcC
Q psy8370 144 PE--DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 221 (256)
Q Consensus 144 ~~--~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 221 (256)
+. ...++||+|++.---..+ ...+++.+.+ ++|++.++++.+.. |...-.+.+.+.|
T Consensus 354 ~~~~~~~~~~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyvsc~p~----------------tlard~~~l~~~g 412 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYVSCNPA----------------TLARDLEFLCKEG 412 (431)
T ss_pred HHHHhcCCCCCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEEcCCHH----------------HHHHHHHHHHHCC
Confidence 21 111369999975321111 1345555543 78999888853211 1111234566789
Q ss_pred CcEEEeeeecCCCCc
Q psy8370 222 LKCVKSEKVTGMPKS 236 (256)
Q Consensus 222 f~~~~~~~~~~~~~~ 236 (256)
|++........+|..
T Consensus 413 y~~~~~~~~DmFP~T 427 (431)
T TIGR00479 413 YGITWVQPVDMFPHT 427 (431)
T ss_pred eeEEEEEEeccCCCC
Confidence 998887766666643
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.6e-10 Score=95.89 Aligned_cols=117 Identities=16% Similarity=0.136 Sum_probs=86.6
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEcccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDF 142 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~ 142 (256)
..++..++ ...++.+|||+|||+|..+.+++... ..+|+++|+++.+++.+++++...+. ++ .+...|...+
T Consensus 226 s~~~~~~l----~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v-~~~~~Da~~l 300 (431)
T PRK14903 226 SQIVPLLM----ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSI-EIKIADAERL 300 (431)
T ss_pred HHHHHHHh----CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeE-EEEECchhhh
Confidence 34454444 56778899999999999999887753 23899999999999999999987763 45 7888998776
Q ss_pred CC-CCCCCceeEEEech------hhhc-------cCHH-------HHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 143 KP-EDLNIKYDVIWIQW------VLMF-------ILDE-------DIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 143 ~~-~~~~~~~D~V~~~~------~l~~-------~~~~-------~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+. ..+ +||.|++.. ++.. .+.+ ...++|..+.+.|||||.++.+.
T Consensus 301 ~~~~~~--~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 301 TEYVQD--TFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred hhhhhc--cCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 52 233 799999642 1211 1111 22567999999999999998864
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.9e-11 Score=91.17 Aligned_cols=116 Identities=21% Similarity=0.306 Sum_probs=86.8
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQD 141 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~ 141 (256)
.+++..+. ....+++||||||++|..+.+++.... .+|+.+|+++...+.|++.+...+ .++ +++.+|+.+
T Consensus 34 g~lL~~l~----~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I-~~~~gda~~ 108 (205)
T PF01596_consen 34 GQLLQMLV----RLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRI-EVIEGDALE 108 (205)
T ss_dssp HHHHHHHH----HHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGE-EEEES-HHH
T ss_pred HHHHHHHH----HhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcE-EEEEeccHh
Confidence 35666555 335678999999999999999986533 299999999999999999998765 467 899999876
Q ss_pred cCC----CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 142 FKP----EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 142 ~~~----~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
..+ ....+.||+|+....-. ....+++.+.+.|+|||.+++-+..
T Consensus 109 ~l~~l~~~~~~~~fD~VFiDa~K~-----~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 109 VLPELANDGEEGQFDFVFIDADKR-----NYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp HHHHHHHTTTTTSEEEEEEESTGG-----GHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred hHHHHHhccCCCceeEEEEccccc-----chhhHHHHHhhhccCCeEEEEcccc
Confidence 432 11124799999986533 3356888888999999999875433
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-10 Score=86.85 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.++.+|||+|||+|.++..++.++..+|+++|.++.+++.++++++..+ .++ .++.+|+.+...... .+||+|+++=
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v-~~~~~D~~~~l~~~~-~~fDlV~~DP 129 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNA-RVVNTNALSFLAQPG-TPHNVVFVDP 129 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcE-EEEEchHHHHHhhcC-CCceEEEECC
Confidence 4567999999999999997667777799999999999999999988765 356 889999876543222 2699999874
Q ss_pred hhhccCHHHHHHHHHHHhh--hcCCCcEEEEEe
Q psy8370 159 VLMFILDEDIIKFLNLCKQ--ILNKNGIIIIKD 189 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~--~LkpgG~l~i~~ 189 (256)
-+.. ......++.+.. .|+|+|.+++..
T Consensus 130 Py~~---g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 130 PFRK---GLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred CCCC---ChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 3211 112344555544 478999988863
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=95.65 Aligned_cols=122 Identities=17% Similarity=0.200 Sum_probs=95.5
Q ss_pred cchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC---CCcceEEE
Q psy8370 60 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC---DKLDKCYN 136 (256)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~i~~~~~ 136 (256)
.|.+..++.+.... . +++|||+-|-||.++.+.+..|+.+|++||.|..+++.|++++..++ .++ .+++
T Consensus 203 lDqR~~R~~l~~~~------~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~-~~i~ 274 (393)
T COG1092 203 LDQRDNRRALGELA------A-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRH-RFIV 274 (393)
T ss_pred HHhHHHHHHHhhhc------c-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccce-eeeh
Confidence 45566667776666 3 89999999999999999988888899999999999999999998776 345 8999
Q ss_pred ccccccCCCCC--CCceeEEEech-hhh----c-cC-HHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 137 VGIQDFKPEDL--NIKYDVIWIQW-VLM----F-IL-DEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 137 ~d~~~~~~~~~--~~~~D~V~~~~-~l~----~-~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+.++..... ..+||+|++.= .+. . .. ..+...++..+.++|+|||.++++.
T Consensus 275 ~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 275 GDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred hhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 99988754222 13899999761 111 0 11 1456789999999999999999974
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-10 Score=90.46 Aligned_cols=114 Identities=18% Similarity=0.152 Sum_probs=87.2
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEcccccc
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDF 142 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~ 142 (256)
+++..+. ...++++|||||+++|..+.+++..-. ..++++|.+++..+.|+++++..+ .++ .++.+|+.+.
T Consensus 108 ~lL~~L~----~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I-~li~GdA~e~ 182 (278)
T PLN02476 108 QLLAMLV----QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKV-NVKHGLAAES 182 (278)
T ss_pred HHHHHHH----HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-EEEEcCHHHH
Confidence 4455444 445688999999999999999876421 279999999999999999999876 357 8999998765
Q ss_pred CCC----CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 143 KPE----DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 143 ~~~----~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+. ...++||+|+...-- .....+++.+.+.|+|||.+++-+.
T Consensus 183 L~~l~~~~~~~~FD~VFIDa~K-----~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 183 LKSMIQNGEGSSYDFAFVDADK-----RMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred HHHHHhcccCCCCCEEEECCCH-----HHHHHHHHHHHHhcCCCcEEEEecC
Confidence 431 112479999997542 4456788999999999999887433
|
|
| >KOG2940|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=7e-12 Score=93.67 Aligned_cols=143 Identities=14% Similarity=0.218 Sum_probs=105.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.....++|||||-|....++...+..+++-+|-|-.|++.++..-. ..... ....+|-+.+++.+. ++|+|+++..
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~i~~-~~~v~DEE~Ldf~en--s~DLiisSls 146 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PSIET-SYFVGDEEFLDFKEN--SVDLIISSLS 146 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-CceEE-EEEecchhccccccc--chhhhhhhhh
Confidence 4457899999999999999998898899999999999998876522 22233 667888888887766 9999999999
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc--------cccC---CCC--ceeeCHHHHHHHHHhcCCcEEE
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN--------EYDD---EDS--SVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--------~~~~---~~~--~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
+|+. .++...+.+|...|||+|.|+-+......... ..+. ... +-.....++-.++..+||....
T Consensus 147 lHW~--NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~t 224 (325)
T KOG2940|consen 147 LHWT--NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLT 224 (325)
T ss_pred hhhh--ccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccce
Confidence 9999 56678999999999999999875322111100 0000 000 1112447788899999998876
Q ss_pred ee
Q psy8370 227 SE 228 (256)
Q Consensus 227 ~~ 228 (256)
++
T Consensus 225 vD 226 (325)
T KOG2940|consen 225 VD 226 (325)
T ss_pred ec
Confidence 54
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.5e-10 Score=86.55 Aligned_cols=100 Identities=19% Similarity=0.335 Sum_probs=83.3
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHh-cC-CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
...++.+|+|.|.|+|.++..|+.. +. .+|+.+|+.++..+.|++++...+ +++ .+...|+.+..... .||+
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v-~~~~~Dv~~~~~~~---~vDa 166 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRV-TLKLGDVREGIDEE---DVDA 166 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccce-EEEecccccccccc---ccCE
Confidence 6899999999999999999999853 33 399999999999999999998765 346 77888988776554 5999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+.. +| +.-..++.+++.|+|||.+.+.
T Consensus 167 v~LD-----mp--~PW~~le~~~~~Lkpgg~~~~y 194 (256)
T COG2519 167 VFLD-----LP--DPWNVLEHVSDALKPGGVVVVY 194 (256)
T ss_pred EEEc-----CC--ChHHHHHHHHHHhCCCcEEEEE
Confidence 9885 43 3347999999999999999985
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.8e-10 Score=85.81 Aligned_cols=130 Identities=16% Similarity=0.116 Sum_probs=85.3
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKH----FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
.+.+|||+|||+|.++..++... ..+|+++|+++.+++.|+++.. ++ .++..|+..... .. +||+|++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~----~~-~~~~~D~~~~~~-~~--~FDlIIs 120 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP----EA-TWINADALTTEF-DT--LFDMAIS 120 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc----CC-EEEEcchhcccc-cC--CccEEEE
Confidence 36899999999999999887642 2389999999999999998753 35 889999876543 23 7999999
Q ss_pred chhhh----------ccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCcee-----eCHHHHHHHHHhcC
Q psy8370 157 QWVLM----------FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVV-----RSLPQFCLLFSKAN 221 (256)
Q Consensus 157 ~~~l~----------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~g 221 (256)
+==+. +-...-...+++.+.+++++|+ +++-........ ....+. .+-....+..++.|
T Consensus 121 NPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~ILP~~~~~~~y-----~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (241)
T PHA03412 121 NPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT-FIIPQMSANFRY-----SGTHYFRQDESTTSSKCKKFLDETG 194 (241)
T ss_pred CCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE-EEeCcccccCcc-----cCccceeeccCcccHHHHHHHHhcC
Confidence 82111 1111234568888888556555 555322222211 111111 24466778888888
Q ss_pred CcE
Q psy8370 222 LKC 224 (256)
Q Consensus 222 f~~ 224 (256)
+..
T Consensus 195 ~~~ 197 (241)
T PHA03412 195 LEM 197 (241)
T ss_pred eee
Confidence 754
|
|
| >KOG3191|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-08 Score=73.96 Aligned_cols=144 Identities=13% Similarity=0.079 Sum_probs=103.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..+.-++|||||+|..+.+|+....+ -+.++|+++.+.+...+..+.++.++ ..+..|+..-... + +.|+++.+
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~-~~V~tdl~~~l~~-~--~VDvLvfN 117 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHI-DVVRTDLLSGLRN-E--SVDVLVFN 117 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCcc-ceeehhHHhhhcc-C--CccEEEEC
Confidence 34788999999999999998765332 67889999999999888887776666 7888887765544 3 68888865
Q ss_pred h--h-------------hhcc----CHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHH
Q psy8370 158 W--V-------------LMFI----LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFS 218 (256)
Q Consensus 158 ~--~-------------l~~~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 218 (256)
- + ..+. ..+-..+++..+-.+|.|.|.+++..... -.++++.++++
T Consensus 118 PPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~---------------N~p~ei~k~l~ 182 (209)
T KOG3191|consen 118 PPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA---------------NKPKEILKILE 182 (209)
T ss_pred CCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh---------------cCHHHHHHHHh
Confidence 1 1 1111 11235678888999999999999863222 13578899999
Q ss_pred hcCCcEEEeeeecCCCCcceeeeE
Q psy8370 219 KANLKCVKSEKVTGMPKSLFKIYM 242 (256)
Q Consensus 219 ~~gf~~~~~~~~~~~~~~~~~~~~ 242 (256)
..||.+..........+.++-+.+
T Consensus 183 ~~g~~~~~~~~Rk~~~E~l~ilkf 206 (209)
T KOG3191|consen 183 KKGYGVRIAMQRKAGGETLSILKF 206 (209)
T ss_pred hcccceeEEEEEecCCceEEEEEE
Confidence 999988776655555555555444
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-09 Score=83.58 Aligned_cols=133 Identities=15% Similarity=0.157 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHH-HHHHHHhcCCCcceEEEccccccCCCC---CCCceeEEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQ-AKEEILKDCDKLDKCYNVGIQDFKPED---LNIKYDVIW 155 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~-a~~~~~~~~~~i~~~~~~d~~~~~~~~---~~~~~D~V~ 155 (256)
.++.+|||+|||+|.++..+++.|..+|+++|+++.++.. .++. .++..+...++......+ +-..+|+++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~-----~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsf 148 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD-----ERVKVLERTNIRYVTPADIFPDFATFDVSF 148 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC-----CCeeEeecCCcccCCHhHcCCCceeeeEEE
Confidence 4677999999999999999999888899999999977765 2221 122112233333221111 112577776
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe-cccCCCCccccCCCCce------eeCHHHHHHHHHhcCCcEEEee
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD-NVASGVKNEYDDEDSSV------VRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
++.. ..+..+.+.|+| |.+++-- +-+..+..... ..+.. ..-.+++...+.+.||.+....
T Consensus 149 iS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~-~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (228)
T TIGR00478 149 ISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGREKKN-KKGVVRDKEAIALALHKVIDKGESPDFQEKKII 216 (228)
T ss_pred eehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcC-cCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEE
Confidence 6543 357778899999 6665532 11111110011 11111 1244666777778899887665
Q ss_pred e
Q psy8370 229 K 229 (256)
Q Consensus 229 ~ 229 (256)
.
T Consensus 217 ~ 217 (228)
T TIGR00478 217 F 217 (228)
T ss_pred E
Confidence 3
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.6e-10 Score=88.13 Aligned_cols=106 Identities=16% Similarity=0.230 Sum_probs=79.7
Q ss_pred CCCeEEEEcCCCCH----hHHHHHHhc----CC-eEEEEeCCHHHHHHHHHHH------------------Hh-------
Q psy8370 81 GKTRVLDVGAGIGR----ISKYLLAKH----FD-KIDLLEQSSKFIEQAKEEI------------------LK------- 126 (256)
Q Consensus 81 ~~~~vLDiG~G~G~----~~~~l~~~~----~~-~v~~vD~s~~~~~~a~~~~------------------~~------- 126 (256)
..-+|+..||+||. ++..+.+.. .. +|+|+|+|+.+++.|++-. ..
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 35799999999996 333333321 12 7999999999999998752 10
Q ss_pred -------cCCCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 127 -------DCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 127 -------~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
....+ .|...|+.+.+.+.. +.||+|+|.+++.|++++...++++.+++.|+|||.|++.
T Consensus 195 ~~~v~~~lr~~V-~F~~~NL~~~~~~~~-~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYV-DFQQLNLLAKQWAVP-GPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccC-EEEcccCCCCCCccC-CCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 00234 777888876433211 3799999999999999888899999999999999999986
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.3e-10 Score=88.83 Aligned_cols=123 Identities=18% Similarity=0.226 Sum_probs=89.4
Q ss_pred ccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC---CCcceEE
Q psy8370 59 DLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC---DKLDKCY 135 (256)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~i~~~~ 135 (256)
-.|.+..++++.... .+++|||+-|-||.++...+..|+.+|+.||.|..+++.+++++..++ .++ .++
T Consensus 108 FlDqR~nR~~v~~~~-------~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~-~~~ 179 (286)
T PF10672_consen 108 FLDQRENRKWVRKYA-------KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRH-RFI 179 (286)
T ss_dssp -GGGHHHHHHHHHHC-------TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCE-EEE
T ss_pred cHHHHhhHHHHHHHc-------CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccce-EEE
Confidence 456777777777765 478999999999999999888888899999999999999999998665 345 889
Q ss_pred EccccccCCC-CCCCceeEEEec---hhhhccC-HHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 136 NVGIQDFKPE-DLNIKYDVIWIQ---WVLMFIL-DEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 136 ~~d~~~~~~~-~~~~~~D~V~~~---~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
..|+.+.... ...++||+|++. +.-.... ..+..+++..+.++|+|||.+++..
T Consensus 180 ~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 180 QGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp ES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 9998765321 112489999976 1100000 1456788999999999999998763
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.5e-10 Score=86.13 Aligned_cols=113 Identities=15% Similarity=0.115 Sum_probs=86.9
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQD 141 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~ 141 (256)
.+++..++ ...+.++|||||+++|..+.+++.... .+++.+|.+++..+.|++.+...+ .++ .++.+++.+
T Consensus 68 g~lL~~l~----~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I-~~~~G~a~e 142 (247)
T PLN02589 68 GQFLNMLL----KLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKI-DFREGPALP 142 (247)
T ss_pred HHHHHHHH----HHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCce-EEEeccHHH
Confidence 45666655 345678999999999999999876432 289999999999999999999776 567 899999877
Q ss_pred cCCCC-----CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 142 FKPED-----LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 142 ~~~~~-----~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
..+.. ..++||+|+...-- ......++.+.+.|+|||.+++-
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiDadK-----~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVDADK-----DNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHHHhccccCCcccEEEecCCH-----HHhHHHHHHHHHhcCCCeEEEEc
Confidence 54321 01489999998552 23456788889999999997764
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-09 Score=84.29 Aligned_cols=130 Identities=13% Similarity=0.185 Sum_probs=88.8
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCC-CCc
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDL-NIK 150 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~-~~~ 150 (256)
.....++.+|||-|+|+|.++..++.... .+|+.+|..++..+.|+++++..+ .++ .+...|+.+..+..+ ...
T Consensus 35 ~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v-~~~~~Dv~~~g~~~~~~~~ 113 (247)
T PF08704_consen 35 RLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNV-TVHHRDVCEEGFDEELESD 113 (247)
T ss_dssp HTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTE-EEEES-GGCG--STT-TTS
T ss_pred HcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCc-eeEecceecccccccccCc
Confidence 34789999999999999999999986532 299999999999999999999877 345 899999964333211 247
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhc-CCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQIL-NKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
+|.|+.. +|.+ -.++..+.+.| +|||.+.+..+.. --.......|++.||..++..
T Consensus 114 ~DavfLD-----lp~P--w~~i~~~~~~L~~~gG~i~~fsP~i---------------eQv~~~~~~L~~~gf~~i~~~ 170 (247)
T PF08704_consen 114 FDAVFLD-----LPDP--WEAIPHAKRALKKPGGRICCFSPCI---------------EQVQKTVEALREHGFTDIETV 170 (247)
T ss_dssp EEEEEEE-----SSSG--GGGHHHHHHHE-EEEEEEEEEESSH---------------HHHHHHHHHHHHTTEEEEEEE
T ss_pred ccEEEEe-----CCCH--HHHHHHHHHHHhcCCceEEEECCCH---------------HHHHHHHHHHHHCCCeeeEEE
Confidence 9999886 3222 25788899999 8999998741100 012334456778899776544
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.4e-10 Score=93.45 Aligned_cols=101 Identities=24% Similarity=0.328 Sum_probs=74.2
Q ss_pred CCeEEEEcCCCCHhHHHHHHhc-----CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEE
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKH-----FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
+..|||+|||+|.++...++.+ ..+|++||-|+.+....+++....+ .++ .++.+|++++..+. ++|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V-~vi~~d~r~v~lpe---kvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKV-TVIHGDMREVELPE---KVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTE-EEEES-TTTSCHSS----EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeE-EEEeCcccCCCCCC---ceeEE
Confidence 5789999999999998776654 3499999999998888777655443 577 99999999998755 59999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
++-.+-.....+.....|....+.|||||.++
T Consensus 263 VSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 263 VSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 99866444433444567888899999998776
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.1e-09 Score=76.59 Aligned_cols=115 Identities=18% Similarity=0.189 Sum_probs=92.6
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC--C
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK--P 144 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~--~ 144 (256)
+.+.+........+.-|||+|.|||.++..++++|.+ .++++|+|++......+.+.. . .++.+|+.++. .
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~----~-~ii~gda~~l~~~l 110 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG----V-NIINGDAFDLRTTL 110 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC----c-cccccchhhHHHHH
Confidence 3333334456788889999999999999999999854 899999999999988887754 3 56888877665 1
Q ss_pred -CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 145 -EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 145 -~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+.....||.|+|..-+-.+|.....++++.+...|.+||.++..
T Consensus 111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 11124799999998888888888889999999999999999875
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-09 Score=89.92 Aligned_cols=138 Identities=16% Similarity=0.151 Sum_probs=94.4
Q ss_pred CeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCC--------------C
Q psy8370 83 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPED--------------L 147 (256)
Q Consensus 83 ~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~--------------~ 147 (256)
.+|||++||+|.++..++. ++.+|+++|.++.+++.++++....+ .++ .++.+|+.+..... .
T Consensus 208 ~~vLDl~~G~G~~sl~la~-~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v-~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 208 GDLLELYCGNGNFTLALAR-NFRRVLATEISKPSVAAAQYNIAANGIDNV-QIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CeEEEEeccccHHHHHHHh-hCCEEEEEECCHHHHHHHHHHHHHhCCCcE-EEEECCHHHHHHHHhhccccccccccccc
Confidence 5799999999999997754 45699999999999999999987665 356 89999987643210 0
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
...||+|+..=--.-+ ...+++.+.+ |++.++++.+.... ..++..+ .+ ||++...
T Consensus 286 ~~~~D~v~lDPPR~G~----~~~~l~~l~~---~~~ivyvSC~p~tl---------------arDl~~L-~~-gY~l~~v 341 (362)
T PRK05031 286 SYNFSTIFVDPPRAGL----DDETLKLVQA---YERILYISCNPETL---------------CENLETL-SQ-THKVERF 341 (362)
T ss_pred CCCCCEEEECCCCCCC----cHHHHHHHHc---cCCEEEEEeCHHHH---------------HHHHHHH-cC-CcEEEEE
Confidence 0148999986211111 1234444443 78888887433111 2344433 33 9999998
Q ss_pred eeecCCCCcceeeeEEEec
Q psy8370 228 EKVTGMPKSLFKIYMFALK 246 (256)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~ 246 (256)
.....+|...+-..+..+.
T Consensus 342 ~~~DmFPqT~HvE~v~lL~ 360 (362)
T PRK05031 342 ALFDQFPYTHHMECGVLLE 360 (362)
T ss_pred EEcccCCCCCcEEEEEEEE
Confidence 8888888877776666554
|
|
| >KOG3987|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.7e-11 Score=87.44 Aligned_cols=141 Identities=18% Similarity=0.202 Sum_probs=96.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
..+.++||+|+|.|..+..++ ..+.+|+++|.|..|....+++ .+-.....++...+- ++|+|.|...
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk---------~ynVl~~~ew~~t~~--k~dli~clNl 178 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKK---------NYNVLTEIEWLQTDV--KLDLILCLNL 178 (288)
T ss_pred CCCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhc---------CCceeeehhhhhcCc--eeehHHHHHH
Confidence 446899999999999999984 4455899999999998887664 233334444444334 7999999998
Q ss_pred hhccCHHHHHHHHHHHhhhcCC-CcEEEEEecccCCCCc-------------cccCCCCceeeCHHHHHHHHHhcCCcEE
Q psy8370 160 LMFILDEDIIKFLNLCKQILNK-NGIIIIKDNVASGVKN-------------EYDDEDSSVVRSLPQFCLLFSKANLKCV 225 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~gf~~~ 225 (256)
+..- .+.-++++.++.+|+| +|..+++-........ .++..+..+......+.++++.+||.+.
T Consensus 179 LDRc--~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~ve 256 (288)
T KOG3987|consen 179 LDRC--FDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVE 256 (288)
T ss_pred HHhh--cChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhh
Confidence 8766 3445899999999999 8988886221111110 1122222333344556778999999998
Q ss_pred EeeeecCCC
Q psy8370 226 KSEKVTGMP 234 (256)
Q Consensus 226 ~~~~~~~~~ 234 (256)
...+-....
T Consensus 257 awTrlPYLC 265 (288)
T KOG3987|consen 257 AWTRLPYLC 265 (288)
T ss_pred hhhcCCeec
Confidence 776655544
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.9e-09 Score=83.25 Aligned_cols=147 Identities=15% Similarity=0.128 Sum_probs=97.7
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEcccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDF 142 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~ 142 (256)
.+.+.++- .......+.+|||+|||+|..+..+... ...+++++|.|+.|++.++..+..... ...........+.
T Consensus 19 ~~vl~El~-~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 97 (274)
T PF09243_consen 19 YRVLSELR-KRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDF 97 (274)
T ss_pred HHHHHHHH-HhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccc
Confidence 35566665 3334556789999999999876655332 234899999999999999988765431 1101111111111
Q ss_pred CCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCC
Q psy8370 143 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANL 222 (256)
Q Consensus 143 ~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf 222 (256)
... . ..|+|++.++|..++......+++.+.+.+++ .|+++++..+.+.. ...+.++.+.+.|+
T Consensus 98 ~~~-~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~-----------~i~~aR~~l~~~~~ 161 (274)
T PF09243_consen 98 LPF-P--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFR-----------RIAEARDQLLEKGA 161 (274)
T ss_pred ccC-C--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHH-----------HHHHHHHHHhhCCC
Confidence 111 1 35999999999999888888899999888876 88887665555432 34566777777777
Q ss_pred cEEEeee
Q psy8370 223 KCVKSEK 229 (256)
Q Consensus 223 ~~~~~~~ 229 (256)
.++.-..
T Consensus 162 ~v~APCp 168 (274)
T PF09243_consen 162 HVVAPCP 168 (274)
T ss_pred ceECCCc
Confidence 7775443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.9e-09 Score=79.82 Aligned_cols=124 Identities=19% Similarity=0.182 Sum_probs=93.8
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC-CCCCceeEEEechh
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE-DLNIKYDVIWIQWV 159 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~-~~~~~~D~V~~~~~ 159 (256)
...++|||||=+....... ...+ .|+.+|++++ .- .+.+.|+.+.+.+ .+.+.||+|.++.+
T Consensus 51 ~~lrlLEVGals~~N~~s~-~~~f-dvt~IDLns~--------------~~-~I~qqDFm~rplp~~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACST-SGWF-DVTRIDLNSQ--------------HP-GILQQDFMERPLPKNESEKFDVISLSLV 113 (219)
T ss_pred ccceEEeecccCCCCcccc-cCce-eeEEeecCCC--------------CC-CceeeccccCCCCCCcccceeEEEEEEE
Confidence 3479999999877665542 2234 6999999873 11 5688888777543 22358999999999
Q ss_pred hhccCH-HHHHHHHHHHhhhcCCCcE-----EEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 160 LMFILD-EDIIKFLNLCKQILNKNGI-----IIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 160 l~~~~~-~~~~~~l~~~~~~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
+.++|. .++-..++.+++.|+|+|. ++++-+ . .....+.+.+.+.|..++...||..+..+.
T Consensus 114 LNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP---~-----~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 114 LNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP---L-----PCVTNSRYMTEERLREIMESLGFTRVKYKK 181 (219)
T ss_pred EeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC---c-----hHhhcccccCHHHHHHHHHhCCcEEEEEEe
Confidence 999986 6788899999999999999 777622 1 122345567889999999999999987654
|
|
| >KOG2904|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.2e-09 Score=79.51 Aligned_cols=129 Identities=17% Similarity=0.226 Sum_probs=83.1
Q ss_pred cccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceE
Q psy8370 58 SDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKC 134 (256)
Q Consensus 58 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~ 134 (256)
++.+.++.-+.+-+.+ .+.....+..+||+|||+|..+..++..... .++++|.|+.++..|.++..... +++ .+
T Consensus 126 PRpETEE~V~~Vid~~-~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i-~v 203 (328)
T KOG2904|consen 126 PRPETEEWVEAVIDAL-NNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRI-EV 203 (328)
T ss_pred cCccHHHHHHHHHHHH-hhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCce-EE
Confidence 4444444433333333 2223344568999999999999998765433 89999999999999999988654 345 55
Q ss_pred EEcccc----ccCCCCCCCceeEEEec--hhh----hcc--------C----------HHHHHHHHHHHhhhcCCCcEEE
Q psy8370 135 YNVGIQ----DFKPEDLNIKYDVIWIQ--WVL----MFI--------L----------DEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 135 ~~~d~~----~~~~~~~~~~~D~V~~~--~~l----~~~--------~----------~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
++.+++ +..+.. .+.+|+++++ ++. ..+ + .+.+..++.-+.|.|+|||.+.
T Consensus 204 ~~~~me~d~~~~~~l~-~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 204 IHNIMESDASDEHPLL-EGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred Eecccccccccccccc-cCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 544333 222111 2489999987 110 000 0 0235556777899999999999
Q ss_pred EEe
Q psy8370 187 IKD 189 (256)
Q Consensus 187 i~~ 189 (256)
+..
T Consensus 283 le~ 285 (328)
T KOG2904|consen 283 LEL 285 (328)
T ss_pred EEe
Confidence 864
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.9e-09 Score=79.38 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=76.7
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccC---CCCCCCceeEEEe
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFK---PEDLNIKYDVIWI 156 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~---~~~~~~~~D~V~~ 156 (256)
...+||||||.|.++..+|...+. .++|+|+....+..+..+....+ .++ .++.+|+.... ..+ +++|-|+.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv-~~~~~da~~~l~~~~~~--~~v~~i~i 94 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNV-RFLRGDARELLRRLFPP--GSVDRIYI 94 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSE-EEEES-CTTHHHHHSTT--TSEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccce-EEEEccHHHHHhhcccC--CchheEEE
Confidence 348999999999999999888765 99999999999999988888766 567 89999987742 223 38999998
Q ss_pred chhhhccCH------HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 157 QWVLMFILD------EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 157 ~~~l~~~~~------~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.+-=-+... ---..+++.++++|+|||.+.+.
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 743211110 01246999999999999999986
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.7e-09 Score=71.83 Aligned_cols=95 Identities=19% Similarity=0.250 Sum_probs=69.9
Q ss_pred CCCCCCeEEEEcCCCCH-hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 78 SDPGKTRVLDVGAGIGR-ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
...++.+++|||||+|. .+..|++.|. +|+++|+++..++.+++. .+ .++.+|+.+....-- ..+|+|++
T Consensus 13 ~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~------~~-~~v~dDlf~p~~~~y-~~a~liys 83 (134)
T PRK04148 13 EKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL------GL-NAFVDDLFNPNLEIY-KNAKLIYS 83 (134)
T ss_pred ccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh------CC-eEEECcCCCCCHHHH-hcCCEEEE
Confidence 34456899999999996 8888887787 999999999998888765 24 789999987765422 35899998
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.. |+.+++..+.++++.+ |.-+++.
T Consensus 84 ir-----pp~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 84 IR-----PPRDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred eC-----CCHHHHHHHHHHHHHc--CCCEEEE
Confidence 63 3345556666666644 4456664
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-09 Score=88.14 Aligned_cols=158 Identities=13% Similarity=0.094 Sum_probs=101.3
Q ss_pred chhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccc
Q psy8370 61 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGI 139 (256)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~ 139 (256)
+......++..+. +..... +.+|||+|||+|.++..++.. +.+|+|+|+++.+++.++++....+ .++ .++.+|+
T Consensus 179 N~~~~~~l~~~v~-~~~~~~-~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~v-~~~~~d~ 254 (353)
T TIGR02143 179 NAAVNIKMLEWAC-EVTQGS-KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDNV-QIIRMSA 254 (353)
T ss_pred CHHHHHHHHHHHH-HHhhcC-CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcE-EEEEcCH
Confidence 3333444555544 222222 347999999999999987554 4599999999999999999988765 356 8999998
Q ss_pred cccCCCC---------C-----CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCc
Q psy8370 140 QDFKPED---------L-----NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSS 205 (256)
Q Consensus 140 ~~~~~~~---------~-----~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 205 (256)
.++.... . ...||+|+..=-=.- ....+++.+. +|++.++++.+....
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G----~~~~~l~~l~---~~~~ivYvsC~p~tl----------- 316 (353)
T TIGR02143 255 EEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG----LDPDTCKLVQ---AYERILYISCNPETL----------- 316 (353)
T ss_pred HHHHHHHhhccccccccccccccCCCCEEEECCCCCC----CcHHHHHHHH---cCCcEEEEEcCHHHH-----------
Confidence 7754310 0 013798887521001 1123444443 478999987433222
Q ss_pred eeeCHHHHHHHHHhcCCcEEEeeeecCCCCcceeeeEEEec
Q psy8370 206 VVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246 (256)
Q Consensus 206 ~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~l~ 246 (256)
..++..+. .||++........+|...+-..+..+.
T Consensus 317 ----aRDl~~L~--~~Y~l~~v~~~DmFP~T~HvE~v~lL~ 351 (353)
T TIGR02143 317 ----KANLEQLS--ETHRVERFALFDQFPYTHHMECGVLLE 351 (353)
T ss_pred ----HHHHHHHh--cCcEEEEEEEcccCCCCCcEEEEEEEE
Confidence 13343333 359999988888888877776666554
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG1500|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.3e-09 Score=82.37 Aligned_cols=109 Identities=24% Similarity=0.317 Sum_probs=83.1
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCcee
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
++.....++.|||+|||+|.++...+..|+++|++||-| +|.+.|++....+. .++ .++.+.+++...++ +.|
T Consensus 171 ~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rI-tVI~GKiEdieLPE---k~D 245 (517)
T KOG1500|consen 171 ENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRI-TVIPGKIEDIELPE---KVD 245 (517)
T ss_pred hcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceE-EEccCccccccCch---hcc
Confidence 344456788999999999999999999999999999985 57899999887654 567 88899998887665 489
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
++++.-+-..+-.+......-.+++.|+|+|..+=+
T Consensus 246 viISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 246 VIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred EEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 999875544442233233334567999999987643
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-08 Score=81.82 Aligned_cols=139 Identities=14% Similarity=0.030 Sum_probs=103.0
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEc-cccccCCCC
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNV-GIQDFKPED 146 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~-d~~~~~~~~ 146 (256)
+.+.+-+.....++..|||--||||.++..+.-.|. .++|.|++..|++-++.+++..+ ... .+... |+..++...
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~-~~~~~~Da~~lpl~~ 262 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDY-PVLKVLDATNLPLRD 262 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCce-eEEEecccccCCCCC
Confidence 333333555778889999999999999999877777 89999999999999999998765 333 34555 999998665
Q ss_pred CCCceeEEEechh------hhccC-HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHh
Q psy8370 147 LNIKYDVIWIQWV------LMFIL-DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 219 (256)
Q Consensus 147 ~~~~~D~V~~~~~------l~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (256)
. ++|.|++.-- ..-.. ++-..++++.++++|++||.+++..+ ......+.+
T Consensus 263 ~--~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p--------------------~~~~~~~~~ 320 (347)
T COG1041 263 N--SVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP--------------------RDPRHELEE 320 (347)
T ss_pred C--ccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC--------------------CcchhhHhh
Confidence 5 7999997611 11111 23467899999999999999998632 112345677
Q ss_pred cCCcEEEeeeec
Q psy8370 220 ANLKCVKSEKVT 231 (256)
Q Consensus 220 ~gf~~~~~~~~~ 231 (256)
.||.++......
T Consensus 321 ~~f~v~~~~~~~ 332 (347)
T COG1041 321 LGFKVLGRFTMR 332 (347)
T ss_pred cCceEEEEEEEe
Confidence 899998765443
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-09 Score=85.94 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=61.9
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEE
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
+.....++.+|||||||+|.++..++..+. +|+++|+++.|++.+++++.. .++ .++.+|+.+++...- .+|.|
T Consensus 36 ~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~--~~v-~~i~~D~~~~~~~~~--~~~~v 109 (272)
T PRK00274 36 DAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE--DNL-TIIEGDALKVDLSEL--QPLKV 109 (272)
T ss_pred HhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc--Cce-EEEEChhhcCCHHHc--CcceE
Confidence 333566788999999999999999988876 899999999999999987643 467 899999988754322 24777
Q ss_pred Eec
Q psy8370 155 WIQ 157 (256)
Q Consensus 155 ~~~ 157 (256)
+++
T Consensus 110 v~N 112 (272)
T PRK00274 110 VAN 112 (272)
T ss_pred EEe
Confidence 776
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-09 Score=81.04 Aligned_cols=140 Identities=15% Similarity=0.076 Sum_probs=99.5
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEccccccCCCCCCCceeE
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC---DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
.....+.+|||-..|-|+.+...+++|+..|+.+|.++..++.|.-+-=..+ ..+ +++.+|..+......+.+||+
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i-~iilGD~~e~V~~~~D~sfDa 208 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAI-KIILGDAYEVVKDFDDESFDA 208 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccccccc-EEecccHHHHHhcCCccccce
Confidence 3456789999999999999999999998899999999999988865421111 345 889999887765433458999
Q ss_pred EEec---hhhh-ccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 154 IWIQ---WVLM-FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 154 V~~~---~~l~-~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
|+-. +++. .+ --..+.++++|+|+|||.++-.......-.... --+..+.+-|+++||+++...
T Consensus 209 IiHDPPRfS~AgeL---YseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~--------d~~~gVa~RLr~vGF~~v~~~ 276 (287)
T COG2521 209 IIHDPPRFSLAGEL---YSEEFYRELYRILKRGGRLFHYVGNPGKRYRGL--------DLPKGVAERLRRVGFEVVKKV 276 (287)
T ss_pred EeeCCCccchhhhH---hHHHHHHHHHHHcCcCCcEEEEeCCCCcccccC--------ChhHHHHHHHHhcCceeeeee
Confidence 9854 1111 22 124689999999999999987532222111111 124667889999999977644
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.7e-09 Score=79.94 Aligned_cols=106 Identities=17% Similarity=0.150 Sum_probs=84.0
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCC-CCceeEEEech
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDL-NIKYDVIWIQW 158 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~-~~~~D~V~~~~ 158 (256)
...+||||||.|.+...+|.+.+. .++|||+....+..|.+.+...+. ++ .+++.|+........ .++.|-|+.++
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nl-ri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNL-RLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcE-EEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 468999999999999999988876 899999999999999999998887 88 999999877653221 23899999875
Q ss_pred hhhcc------CHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 159 VLMFI------LDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 159 ~l~~~------~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
-=-|- ..=-...+++.+.++|+|||.|.+.
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 42111 1111246999999999999999996
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-08 Score=80.74 Aligned_cols=106 Identities=20% Similarity=0.310 Sum_probs=79.4
Q ss_pred CCCeEEEEcCCCCH----hHHHHHHhc-----CC-eEEEEeCCHHHHHHHHHHHH-------------------hcC---
Q psy8370 81 GKTRVLDVGAGIGR----ISKYLLAKH-----FD-KIDLLEQSSKFIEQAKEEIL-------------------KDC--- 128 (256)
Q Consensus 81 ~~~~vLDiG~G~G~----~~~~l~~~~-----~~-~v~~vD~s~~~~~~a~~~~~-------------------~~~--- 128 (256)
..-+|+-.||+||. ++..+.+.+ +. +|+|+|+|..+++.|+.-.- ..+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 57899999999995 334443333 12 89999999999999865320 000
Q ss_pred --------CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 129 --------DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 129 --------~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
..+ .|...|+....+.. +.||+|+|.+++-++..+...++++..+..|+|||.|++..
T Consensus 176 y~v~~~ir~~V-~F~~~NLl~~~~~~--~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMV-RFRRHNLLDDSPFL--GKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhccc-EEeecCCCCCcccc--CCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 123 56666665555333 37999999999999998888899999999999999999963
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.9e-09 Score=78.63 Aligned_cols=105 Identities=19% Similarity=0.157 Sum_probs=74.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCC--CCCCceeEEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPE--DLNIKYDVIW 155 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~--~~~~~~D~V~ 155 (256)
..+.+|||++||+|.++..++.+|+..|++||.++.+++.+++++...+ .++ .++..|+.+.... .....+|+|+
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~-~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQA-EVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccE-EEEehhHHHHHHHhhccCCCceEEE
Confidence 3578999999999999999999998899999999999999999988665 246 7899998654321 1111478888
Q ss_pred echhhhccCHHHHHHHHHHH--hhhcCCCcEEEEE
Q psy8370 156 IQWVLMFILDEDIIKFLNLC--KQILNKNGIIIIK 188 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~--~~~LkpgG~l~i~ 188 (256)
..=-+..- ....+++.+ ...|+++|.+++.
T Consensus 127 ~DPPy~~~---~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 127 LDPPFFNG---ALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred ECcCCCCC---cHHHHHHHHHHCCCCCCCeEEEEE
Confidence 75222211 122334433 3468888887775
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.98 E-value=4e-09 Score=86.11 Aligned_cols=106 Identities=17% Similarity=0.232 Sum_probs=79.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc-----CCCcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
+.+.+||.||+|.|..+.++++.. ..++++||+++.+++.+++.+... ..++ +++.+|...+..... ++||+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv-~v~~~Da~~~L~~~~-~~yDv 179 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRL-ELIINDARAELEKRD-EKFDV 179 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCce-EEEEChhHHHHhhCC-CCccE
Confidence 356899999999999999887753 458999999999999999987532 2567 889999887754322 48999
Q ss_pred EEechhhhcc---CHH--HHHHHHH-HHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFI---LDE--DIIKFLN-LCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~---~~~--~~~~~l~-~~~~~LkpgG~l~i~ 188 (256)
|++... ... +.. --..+++ .+.+.|+|||.+++.
T Consensus 180 Ii~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 180 IIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 998732 110 000 0135777 899999999998763
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.7e-09 Score=83.31 Aligned_cols=84 Identities=12% Similarity=0.226 Sum_probs=65.9
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCC
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN 148 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~ 148 (256)
+..++ +.....++.+|||||||+|.++..+++.+. +++++|+++.+++.+++++... .++ .++.+|+.+.+. .
T Consensus 18 ~~~iv-~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~~-~~v-~ii~~D~~~~~~--~- 90 (258)
T PRK14896 18 VDRIV-EYAEDTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIAA-GNV-EIIEGDALKVDL--P- 90 (258)
T ss_pred HHHHH-HhcCCCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhccC-CCE-EEEEeccccCCc--h-
Confidence 44444 333566789999999999999999988854 8999999999999999887542 367 889999987653 2
Q ss_pred CceeEEEechhh
Q psy8370 149 IKYDVIWIQWVL 160 (256)
Q Consensus 149 ~~~D~V~~~~~l 160 (256)
.+|.|+++--.
T Consensus 91 -~~d~Vv~NlPy 101 (258)
T PRK14896 91 -EFNKVVSNLPY 101 (258)
T ss_pred -hceEEEEcCCc
Confidence 47999887543
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.2e-09 Score=83.33 Aligned_cols=82 Identities=20% Similarity=0.266 Sum_probs=65.6
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCC
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~ 146 (256)
+.+++ +.....++.+|||||||+|.++..++..+. +++++|+++.+++.+++++...+ .++ .++.+|+.+...
T Consensus 25 ~~~Iv-~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v-~ii~~Dal~~~~-- 99 (294)
T PTZ00338 25 LDKIV-EKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKL-EVIEGDALKTEF-- 99 (294)
T ss_pred HHHHH-HhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcE-EEEECCHhhhcc--
Confidence 44444 344567789999999999999999987765 89999999999999999987543 467 899999977643
Q ss_pred CCCceeEEEec
Q psy8370 147 LNIKYDVIWIQ 157 (256)
Q Consensus 147 ~~~~~D~V~~~ 157 (256)
. .||.|+++
T Consensus 100 ~--~~d~VvaN 108 (294)
T PTZ00338 100 P--YFDVCVAN 108 (294)
T ss_pred c--ccCEEEec
Confidence 2 58988876
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.6e-08 Score=75.71 Aligned_cols=135 Identities=19% Similarity=0.177 Sum_probs=93.4
Q ss_pred EEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechhhh
Q psy8370 85 VLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 161 (256)
Q Consensus 85 vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~ 161 (256)
|.||||..|.+...|++++.. .++++|+++..++.|++++...+ .++ .++.+|-.+...+.. ..|.|+...+-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i-~~rlgdGL~~l~~~e--~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRI-EVRLGDGLEVLKPGE--DVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTE-EEEE-SGGGG--GGG-----EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccE-EEEECCcccccCCCC--CCCEEEEecCCH
Confidence 689999999999999998854 89999999999999999999776 456 888888544333222 378888876644
Q ss_pred ccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCcceeee
Q psy8370 162 FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIY 241 (256)
Q Consensus 162 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 241 (256)
. ....+|+.....++....|++..+ .....+++.+.++||.+++....... ...|.+.
T Consensus 78 ~----lI~~ILe~~~~~~~~~~~lILqP~-----------------~~~~~LR~~L~~~gf~I~~E~lv~e~-~~~YeIi 135 (205)
T PF04816_consen 78 E----LIIEILEAGPEKLSSAKRLILQPN-----------------THAYELRRWLYENGFEIIDEDLVEEN-GRFYEII 135 (205)
T ss_dssp H----HHHHHHHHTGGGGTT--EEEEEES-----------------S-HHHHHHHHHHTTEEEEEEEEEEET-TEEEEEE
T ss_pred H----HHHHHHHhhHHHhccCCeEEEeCC-----------------CChHHHHHHHHHCCCEEEEeEEEeEC-CEEEEEE
Confidence 2 356788888888877778887521 13468899999999999987643322 2345554
Q ss_pred EEE
Q psy8370 242 MFA 244 (256)
Q Consensus 242 ~~~ 244 (256)
...
T Consensus 136 ~~~ 138 (205)
T PF04816_consen 136 VAE 138 (205)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG3420|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-09 Score=74.97 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=67.8
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..-.+++++|+|||.|.++......+...|.|+|+++++++.++.+......++ .+.++|+.++.+..+ .||.++.+
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqi-dlLqcdildle~~~g--~fDtaviN 121 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQI-DLLQCDILDLELKGG--IFDTAVIN 121 (185)
T ss_pred ccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhh-heeeeeccchhccCC--eEeeEEec
Confidence 446789999999999999988777777799999999999999999988766677 899999998887665 89999987
Q ss_pred hh
Q psy8370 158 WV 159 (256)
Q Consensus 158 ~~ 159 (256)
--
T Consensus 122 pp 123 (185)
T KOG3420|consen 122 PP 123 (185)
T ss_pred CC
Confidence 43
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.7e-08 Score=73.69 Aligned_cols=116 Identities=16% Similarity=0.071 Sum_probs=79.1
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-e---------EEEEeCCHHHHHHHHHHHHhcC--CCcceEEE
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-K---------IDLLEQSSKFIEQAKEEILKDC--DKLDKCYN 136 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~---------v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~ 136 (256)
+...+.......++..|||.-||+|.+..+.+..+.. . ++|+|+++.+++.+++++...+ ..+ .+..
T Consensus 16 lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i-~~~~ 94 (179)
T PF01170_consen 16 LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI-DFIQ 94 (179)
T ss_dssp HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE-EEEE
T ss_pred HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce-EEEe
Confidence 3333335556778899999999999999887665532 3 7899999999999999998765 245 7889
Q ss_pred ccccccCCCCCCCceeEEEechhhh-ccC-----HHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 137 VGIQDFKPEDLNIKYDVIWIQWVLM-FIL-----DEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 137 ~d~~~~~~~~~~~~~D~V~~~~~l~-~~~-----~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
.|+.+++...+ ++|+|+++-=+- .+. ..-...+++++.+++++...+++
T Consensus 95 ~D~~~l~~~~~--~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 95 WDARELPLPDG--SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp --GGGGGGTTS--BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred cchhhcccccC--CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 99999985444 799999982211 011 12345688999999999555554
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.4e-08 Score=77.52 Aligned_cols=143 Identities=20% Similarity=0.199 Sum_probs=105.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.++.+|+|+=+|-|.++..++..+..+|+++|++|.+++..++++..++ ..+ ..+++|..+..+... .+|-|++.
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v-~~i~gD~rev~~~~~--~aDrIim~ 263 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRV-EPILGDAREVAPELG--VADRIIMG 263 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcccee-eEEeccHHHhhhccc--cCCEEEeC
Confidence 4599999999999999999998887679999999999999999998765 335 789999999987755 79999998
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCC--cEEEeeeecCCCC
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANL--KCVKSEKVTGMPK 235 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf--~~~~~~~~~~~~~ 235 (256)
..- ....++..+.+.+++||.+...+....... ..+....+.......|+ ++........+..
T Consensus 264 ~p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~---------~~~~~~~i~~~~~~~~~~~~v~~~r~VksysP 328 (341)
T COG2520 264 LPK------SAHEFLPLALELLKDGGIIHYYEFVPEDDI---------EERPEKRIKSAARKGGYKVEVLKVRRVKSYSP 328 (341)
T ss_pred CCC------cchhhHHHHHHHhhcCcEEEEEeccchhhc---------ccchHHHHHHHHhhccCcceEEEEEEecccCC
Confidence 553 223677788888999999988654333321 11245667777777765 4444444555555
Q ss_pred cceee
Q psy8370 236 SLFKI 240 (256)
Q Consensus 236 ~~~~~ 240 (256)
..|.+
T Consensus 329 ~v~hv 333 (341)
T COG2520 329 GVYHV 333 (341)
T ss_pred CeeEE
Confidence 44443
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-08 Score=79.16 Aligned_cols=82 Identities=13% Similarity=0.250 Sum_probs=63.1
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCC
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN 148 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~ 148 (256)
+.+++ +.....++.+|||||||+|.++..+++.+. .++++|+++.+++.+++++.. ..++ .++.+|+.+.+..
T Consensus 18 ~~~i~-~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~-~~~v-~v~~~D~~~~~~~--- 90 (253)
T TIGR00755 18 IQKIV-EAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL-YERL-EVIEGDALKVDLP--- 90 (253)
T ss_pred HHHHH-HhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc-CCcE-EEEECchhcCChh---
Confidence 44444 344566789999999999999999988875 799999999999999987754 2366 8899999877653
Q ss_pred Ccee---EEEech
Q psy8370 149 IKYD---VIWIQW 158 (256)
Q Consensus 149 ~~~D---~V~~~~ 158 (256)
.+| +|+++-
T Consensus 91 -~~d~~~~vvsNl 102 (253)
T TIGR00755 91 -DFPKQLKVVSNL 102 (253)
T ss_pred -HcCCcceEEEcC
Confidence 355 666653
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.1e-09 Score=77.94 Aligned_cols=107 Identities=25% Similarity=0.296 Sum_probs=75.1
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCC--CCCceeEEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPED--LNIKYDVIW 155 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~--~~~~~D~V~ 155 (256)
-++.++||+-||+|.++.+.+.+|+.+|+.||.++.+....++++...+ .+. .++..|+....... ...+||+|+
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~-~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKI-RVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGE-EEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcce-eeeccCHHHHHHhhcccCCCceEEE
Confidence 4789999999999999999999999999999999999999999998765 235 77888865443211 123899999
Q ss_pred echhhhccCHHHHHHHHHHHh--hhcCCCcEEEEEe
Q psy8370 156 IQWVLMFILDEDIIKFLNLCK--QILNKNGIIIIKD 189 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~ 189 (256)
+.=-...- .....+++.+. ..|+++|.+++..
T Consensus 120 lDPPY~~~--~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 120 LDPPYAKG--LYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp E--STTSC--HHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ECCCcccc--hHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 87222211 11345666665 7889999998864
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.8e-08 Score=84.88 Aligned_cols=153 Identities=17% Similarity=0.212 Sum_probs=106.1
Q ss_pred ccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEc
Q psy8370 59 DLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNV 137 (256)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~ 137 (256)
..+...+..++.... ......++.+|+|+-||.|.++..|+.+. .+|+|+|+++++++.|+++.+.++ .++ .+..+
T Consensus 272 Q~N~~~~ekl~~~a~-~~~~~~~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N~-~f~~~ 348 (432)
T COG2265 272 QVNPAVAEKLYETAL-EWLELAGGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDNV-EFIAG 348 (432)
T ss_pred ecCHHHHHHHHHHHH-HHHhhcCCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCcE-EEEeC
Confidence 333344445555555 45566778999999999999999997544 499999999999999999998877 456 99999
Q ss_pred cccccCCCC-CCCceeEEEechhhhccCHHHHH-HHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHH
Q psy8370 138 GIQDFKPED-LNIKYDVIWIQWVLMFILDEDII-KFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL 215 (256)
Q Consensus 138 d~~~~~~~~-~~~~~D~V~~~~~l~~~~~~~~~-~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (256)
+.++..... ....+|+|+.. -|..... .+++.+. .++|..+++++.+..... .=..
T Consensus 349 ~ae~~~~~~~~~~~~d~VvvD-----PPR~G~~~~~lk~l~-~~~p~~IvYVSCNP~Tla----------------RDl~ 406 (432)
T COG2265 349 DAEEFTPAWWEGYKPDVVVVD-----PPRAGADREVLKQLA-KLKPKRIVYVSCNPATLA----------------RDLA 406 (432)
T ss_pred CHHHHhhhccccCCCCEEEEC-----CCCCCCCHHHHHHHH-hcCCCcEEEEeCCHHHHH----------------HHHH
Confidence 998887543 11368999976 1112222 3444444 457888999975433322 2235
Q ss_pred HHHhcCCcEEEeeeecCCCCc
Q psy8370 216 LFSKANLKCVKSEKVTGMPKS 236 (256)
Q Consensus 216 ~l~~~gf~~~~~~~~~~~~~~ 236 (256)
.|.+.|+.+.+......+|-.
T Consensus 407 ~L~~~gy~i~~v~~~DmFP~T 427 (432)
T COG2265 407 ILASTGYEIERVQPFDMFPHT 427 (432)
T ss_pred HHHhCCeEEEEEEEeccCCCc
Confidence 777889988877766666643
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.2e-08 Score=77.71 Aligned_cols=108 Identities=24% Similarity=0.340 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc-----CCCcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
+.+.+||-||.|.|..+..+++.. ..++++||+++.+++.|++.+... ..++ +++.+|...+........||+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~-~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRV-RIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTE-EEEESTHHHHHHTSSST-EEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCce-EEEEhhhHHHHHhccCCcccE
Confidence 468999999999999999987654 359999999999999999987642 2467 889999887765444127999
Q ss_pred EEechhhhccCHH--HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILDE--DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+....-...+.. --..+++.+++.|+|||.+++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 9986332111111 1246899999999999999985
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.4e-08 Score=79.35 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=84.5
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhc-C--CCcceEEE-ccccccCCC--CCCCceeE
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKD-C--DKLDKCYN-VGIQDFKPE--DLNIKYDV 153 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~-~--~~i~~~~~-~d~~~~~~~--~~~~~~D~ 153 (256)
.+.++||||||+|.....++.+.+. +++|+|+++.+++.|++++... + .++ .+.. .+..+.... ...+.||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I-~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAI-RLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE-EEEEccchhhhhhcccccCCceEE
Confidence 5689999999999888777665332 8999999999999999999876 3 345 5543 333332211 11237999
Q ss_pred EEechhhhccCHHH---HHHHHHH----------------HhhhcCCCcEEEEEecccCCCCccccCCCCce------ee
Q psy8370 154 IWIQWVLMFILDED---IIKFLNL----------------CKQILNKNGIIIIKDNVASGVKNEYDDEDSSV------VR 208 (256)
Q Consensus 154 V~~~~~l~~~~~~~---~~~~l~~----------------~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~------~~ 208 (256)
|+|+==++.-..+. -..-.+. ..+++.+||.+-+.......... +......+ .-
T Consensus 193 ivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~-~~~~~gwftsmv~kk~ 271 (321)
T PRK11727 193 TLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKA-FAKQVLWFTSLVSKKE 271 (321)
T ss_pred EEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHH-HHhhCcEEEEEeeccC
Confidence 99983332221110 0111111 22344567766554322222111 11111111 12
Q ss_pred CHHHHHHHHHhcCCcEEEee
Q psy8370 209 SLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 209 ~~~~~~~~l~~~gf~~~~~~ 228 (256)
+...+.+.+++.|...+.+.
T Consensus 272 ~l~~l~~~L~~~~~~~~~~~ 291 (321)
T PRK11727 272 NLPPLYRALKKVGAVEVKTI 291 (321)
T ss_pred CHHHHHHHHHHcCCceEEEE
Confidence 78999999999999555433
|
|
| >KOG1661|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-08 Score=74.65 Aligned_cols=99 Identities=19% Similarity=0.213 Sum_probs=77.9
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHh-cCC--eEEEEeCCHHHHHHHHHHHHhcC-----------CCcceEEEccccccCC
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAK-HFD--KIDLLEQSSKFIEQAKEEILKDC-----------DKLDKCYNVGIQDFKP 144 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~--~v~~vD~s~~~~~~a~~~~~~~~-----------~~i~~~~~~d~~~~~~ 144 (256)
..++.+.||+|+|+|+++..++.. +.. .++|+|.-++.++.+++++...- ..+ .++.+|......
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l-~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL-SIVVGDGRKGYA 158 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce-EEEeCCccccCC
Confidence 488999999999999999887633 332 45999999999999999886432 245 678888888777
Q ss_pred CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+.. +||.|++..... ...+++...|++||.+++-
T Consensus 159 e~a--~YDaIhvGAaa~--------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 159 EQA--PYDAIHVGAAAS--------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ccC--CcceEEEccCcc--------ccHHHHHHhhccCCeEEEe
Confidence 666 899999985433 4556778899999999984
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.7e-08 Score=72.99 Aligned_cols=138 Identities=22% Similarity=0.241 Sum_probs=93.0
Q ss_pred HHHHHHHhccCCCCCCC-eEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccC
Q psy8370 67 QFLSSLYCQKKSDPGKT-RVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFK 143 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~-~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~ 143 (256)
++++.+. -........ +++|||+|.|.-+..++-..+. +++.+|.+..-+...+......+ .++ .+++..+++ .
T Consensus 34 Hi~DSL~-~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv-~v~~~R~E~-~ 110 (184)
T PF02527_consen 34 HILDSLA-LLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNV-EVINGRAEE-P 110 (184)
T ss_dssp HHHHHHG-GGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSE-EEEES-HHH-T
T ss_pred HHHHHHH-hhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCE-EEEEeeecc-c
Confidence 4555554 222223333 8999999999999988766654 89999999988887777777666 356 889999988 2
Q ss_pred CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCc
Q psy8370 144 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLK 223 (256)
Q Consensus 144 ~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~ 223 (256)
... .+||+|++..+ ..+..+++-+...+++||.+++.-.. .+.-..++....+...|.+
T Consensus 111 ~~~--~~fd~v~aRAv------~~l~~l~~~~~~~l~~~G~~l~~KG~-------------~~~~El~~~~~~~~~~~~~ 169 (184)
T PF02527_consen 111 EYR--ESFDVVTARAV------APLDKLLELARPLLKPGGRLLAYKGP-------------DAEEELEEAKKAWKKLGLK 169 (184)
T ss_dssp TTT--T-EEEEEEESS------SSHHHHHHHHGGGEEEEEEEEEEESS---------------HHHHHTHHHHHHCCCEE
T ss_pred ccC--CCccEEEeehh------cCHHHHHHHHHHhcCCCCEEEEEcCC-------------ChHHHHHHHHhHHHHhCCE
Confidence 223 37999999877 34457889999999999999985211 1111123445566666766
Q ss_pred EEEee
Q psy8370 224 CVKSE 228 (256)
Q Consensus 224 ~~~~~ 228 (256)
...+.
T Consensus 170 ~~~v~ 174 (184)
T PF02527_consen 170 VLSVP 174 (184)
T ss_dssp EEEEE
T ss_pred Eeeec
Confidence 66554
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-07 Score=74.66 Aligned_cols=109 Identities=14% Similarity=0.045 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-----CCeEEEEeCCHHHHHHHHHHHHhcC-CCc-ceEEEccccccC---CC-CCC
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-----FDKIDLLEQSSKFIEQAKEEILKDC-DKL-DKCYNVGIQDFK---PE-DLN 148 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~-~~i-~~~~~~d~~~~~---~~-~~~ 148 (256)
.++..++|+|||+|.-+..|+... ...++++|+|.++++.+..++.... ..+ ..-+++|+.+.. +. ...
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 566789999999998766655432 2279999999999999999887222 233 034677775541 11 111
Q ss_pred CceeEEEec-hhhhccCHHHHHHHHHHHhh-hcCCCcEEEEE
Q psy8370 149 IKYDVIWIQ-WVLMFILDEDIIKFLNLCKQ-ILNKNGIIIIK 188 (256)
Q Consensus 149 ~~~D~V~~~-~~l~~~~~~~~~~~l~~~~~-~LkpgG~l~i~ 188 (256)
....+++.. .++.++++++...+|+++++ .|+|||.+++.
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 235666654 58999999899999999999 99999999996
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-08 Score=79.56 Aligned_cols=107 Identities=21% Similarity=0.295 Sum_probs=83.3
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC-----CCcceEEEccccccCCCCCCCce
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDC-----DKLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-----~~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
+..+ ++||-||.|.|..++.+++.. ..+++.||+++..++.+++.+.... .++ .++..|..++..... ..|
T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv-~i~i~Dg~~~v~~~~-~~f 150 (282)
T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRV-EIIIDDGVEFLRDCE-EKF 150 (282)
T ss_pred CCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCce-EEEeccHHHHHHhCC-CcC
Confidence 3444 699999999999999998776 4599999999999999999987433 566 888889887765433 279
Q ss_pred eEEEechhhhccCH-H--HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 152 DVIWIQWVLMFILD-E--DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 152 D~V~~~~~l~~~~~-~--~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+|++...=. ..+ + --..+++.+++.|+++|+++..
T Consensus 151 DvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 151 DVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 9999875433 111 0 1246999999999999999984
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-08 Score=75.75 Aligned_cols=97 Identities=24% Similarity=0.346 Sum_probs=68.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
.++.+|+|+.||-|.++..++.. ....|+++|++|.+++..+++.+..+ ..+ ....+|..++.+ .. .+|-|++
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i-~~~~~D~~~~~~-~~--~~drvim 175 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRI-EVINGDAREFLP-EG--KFDRVIM 175 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTE-EEEES-GGG----TT---EEEEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeE-EEEcCCHHHhcC-cc--ccCEEEE
Confidence 67899999999999999999873 33489999999999999999988665 345 788999998877 34 7999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
..--.. ..++..+.+.+++||.+-
T Consensus 176 ~lp~~~------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 176 NLPESS------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp --TSSG------GGGHHHHHHHEEEEEEEE
T ss_pred CChHHH------HHHHHHHHHHhcCCcEEE
Confidence 743222 247777888999988763
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.2e-08 Score=76.14 Aligned_cols=96 Identities=18% Similarity=0.163 Sum_probs=72.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-----CCcceEEEccccccCCCCCCCceeE
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-----DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
-+.+++||=||.|.|..++++++.. .+|+.||+++.+++.+++.+.... .++ +++.. + .... .++||+
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv-~l~~~-~---~~~~-~~~fDV 142 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNF-THAKQ-L---LDLD-IKKYDL 142 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCE-EEeeh-h---hhcc-CCcCCE
Confidence 3567999999999999999998765 499999999999999999665321 344 44431 1 1111 137999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|++... .+ ..+.+.+++.|+|||.++..
T Consensus 143 IIvDs~----~~---~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 143 IICLQE----PD---IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEEcCC----CC---hHHHHHHHHhcCCCcEEEEC
Confidence 998753 11 35778999999999999984
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.2e-08 Score=71.54 Aligned_cols=116 Identities=10% Similarity=0.127 Sum_probs=87.9
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~ 145 (256)
-..+.+++..+.....+++|||+|+|+|..+...+..|...|+..|+.+-.....+-+...++..+ .+...|... .
T Consensus 64 G~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i-~~~~~d~~g-~-- 139 (218)
T COG3897 64 GQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSI-LFTHADLIG-S-- 139 (218)
T ss_pred hHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcccee-EEeeccccC-C--
Confidence 355677776777888899999999999999999988998899999999998888888877777666 777777765 2
Q ss_pred CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 146 DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 146 ~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
. +.+|+++...++..- ....++++...++...|-.+++.+
T Consensus 140 ~--~~~Dl~LagDlfy~~--~~a~~l~~~~~~l~~~g~~vlvgd 179 (218)
T COG3897 140 P--PAFDLLLAGDLFYNH--TEADRLIPWKDRLAEAGAAVLVGD 179 (218)
T ss_pred C--cceeEEEeeceecCc--hHHHHHHHHHHHHHhCCCEEEEeC
Confidence 2 269999999988766 344567774444444444455443
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.6e-08 Score=80.48 Aligned_cols=163 Identities=18% Similarity=0.171 Sum_probs=93.9
Q ss_pred ccccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEE
Q psy8370 57 ISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCY 135 (256)
Q Consensus 57 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~ 135 (256)
+...+......++.... ...+..++ +|||+-||.|.++..++... .+|+|||+++.+++.|+++....+ .++ +++
T Consensus 174 FfQvN~~~~~~l~~~~~-~~l~~~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n~-~f~ 249 (352)
T PF05958_consen 174 FFQVNPEQNEKLYEQAL-EWLDLSKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDNV-EFI 249 (352)
T ss_dssp ---SBHHHHHHHHHHHH-HHCTT-TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--SE-EEE
T ss_pred CccCcHHHHHHHHHHHH-HHhhcCCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCcc-eEE
Confidence 33444444555566555 44455544 89999999999999996544 599999999999999999998776 456 888
Q ss_pred EccccccCCC--------------CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccC
Q psy8370 136 NVGIQDFKPE--------------DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDD 201 (256)
Q Consensus 136 ~~d~~~~~~~--------------~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~ 201 (256)
..+..+.... .....+|+|+..=-=.-+. ..+++.+.+ +.-+++++.+....
T Consensus 250 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~----~~~~~~~~~---~~~ivYvSCnP~tl------- 315 (352)
T PF05958_consen 250 RGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD----EKVIELIKK---LKRIVYVSCNPATL------- 315 (352)
T ss_dssp E--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC----HHHHHHHHH---SSEEEEEES-HHHH-------
T ss_pred EeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch----HHHHHHHhc---CCeEEEEECCHHHH-------
Confidence 7776544210 0012578887751100010 123333332 34577776433222
Q ss_pred CCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCcceeeeEEEecc
Q psy8370 202 EDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALKP 247 (256)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~ 247 (256)
..++. .|. .||++........+|.+.+-..+..|+.
T Consensus 316 --------aRDl~-~L~-~~y~~~~v~~~DmFP~T~HvE~v~lL~r 351 (352)
T PF05958_consen 316 --------ARDLK-ILK-EGYKLEKVQPVDMFPQTHHVETVALLER 351 (352)
T ss_dssp --------HHHHH-HHH-CCEEEEEEEEE-SSTTSS--EEEEEEEE
T ss_pred --------HHHHH-HHh-hcCEEEEEEEeecCCCCCcEEEEEEEEe
Confidence 13343 344 4999999988888888777766666543
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.7e-08 Score=81.01 Aligned_cols=98 Identities=18% Similarity=0.217 Sum_probs=76.5
Q ss_pred CCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 82 KTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
+.+|||++||+|..+..++.. +..+|+++|+++.+++.++++.+..+. ++ .+...|+..+..... .||+|++.-.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~-~v~~~Da~~~l~~~~--~fD~V~lDP~ 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENE-KVFNKDANALLHEER--KFDVVDIDPF 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCce-EEEhhhHHHHHhhcC--CCCEEEECCC
Confidence 468999999999999998765 445899999999999999999876653 34 688899877543223 6999998631
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.. ...++..+.+.+++||.++++
T Consensus 135 --Gs----~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 --GS----PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --CC----cHHHHHHHHHHhcCCCEEEEE
Confidence 12 135777777788999999998
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.4e-07 Score=69.05 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=97.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
..++..+||||+.||.++..++++|++.|+++|..-.-+.. .++.. .++..+...+++.+.+..-.+..|++++..
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~---kLR~d-~rV~~~E~tN~r~l~~~~~~~~~d~~v~Dv 152 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW---KLRND-PRVIVLERTNVRYLTPEDFTEKPDLIVIDV 152 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH---hHhcC-CcEEEEecCChhhCCHHHcccCCCeEEEEe
Confidence 46788999999999999999999999999999998643322 12221 355345566776665543334689999987
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCce------eeCHHHHHHHHHhcCCcEEEeeeecC
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSV------VRSLPQFCLLFSKANLKCVKSEKVTG 232 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gf~~~~~~~~~~ 232 (256)
++-.+ ..+|..+..+++|++.++.---.........-...+.. ..-...+.+.+.+.||.+........
T Consensus 153 SFISL-----~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi 227 (245)
T COG1189 153 SFISL-----KLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPI 227 (245)
T ss_pred ehhhH-----HHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCc
Confidence 77655 47899999999999877764221111111011111111 12446777888889999988775544
Q ss_pred C
Q psy8370 233 M 233 (256)
Q Consensus 233 ~ 233 (256)
.
T Consensus 228 ~ 228 (245)
T COG1189 228 K 228 (245)
T ss_pred c
Confidence 4
|
|
| >KOG3201|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.7e-08 Score=70.60 Aligned_cols=153 Identities=16% Similarity=0.198 Sum_probs=99.7
Q ss_pred cchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC-CCcceE--
Q psy8370 60 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC-DKLDKC-- 134 (256)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~-- 134 (256)
.-+++..+.+..+..+......+.+|||+|.|.-.++-.+.+... ..|..+|-++..++..++...... ...+..
T Consensus 8 vciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~v 87 (201)
T KOG3201|consen 8 VCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCV 87 (201)
T ss_pred EEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehh
Confidence 344455666777765666667789999999996665555444332 389999999999998888765431 111111
Q ss_pred EEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHH
Q psy8370 135 YNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFC 214 (256)
Q Consensus 135 ~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (256)
...+...-........||+|++.+.+-+- +-...+++.+++.|+|.|.-++..+ ....+.+.+.
T Consensus 88 lrw~~~~aqsq~eq~tFDiIlaADClFfd--E~h~sLvdtIk~lL~p~g~Al~fsP--------------RRg~sL~kF~ 151 (201)
T KOG3201|consen 88 LRWLIWGAQSQQEQHTFDIILAADCLFFD--EHHESLVDTIKSLLRPSGRALLFSP--------------RRGQSLQKFL 151 (201)
T ss_pred hHHHHhhhHHHHhhCcccEEEeccchhHH--HHHHHHHHHHHHHhCcccceeEecC--------------cccchHHHHH
Confidence 11111111111112379999999876554 4556799999999999998777421 1224678888
Q ss_pred HHHHhcCCcEEEee
Q psy8370 215 LLFSKANLKCVKSE 228 (256)
Q Consensus 215 ~~l~~~gf~~~~~~ 228 (256)
+.....||.+...+
T Consensus 152 de~~~~gf~v~l~e 165 (201)
T KOG3201|consen 152 DEVGTVGFTVCLEE 165 (201)
T ss_pred HHHHhceeEEEecc
Confidence 88889999876544
|
|
| >KOG2798|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.9e-07 Score=72.43 Aligned_cols=147 Identities=19% Similarity=0.212 Sum_probs=95.7
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH---hcC------------------CCc------
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEIL---KDC------------------DKL------ 131 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~------------------~~i------ 131 (256)
...+.+||--|||.|+++..++..|+ .+-|-|.|--|+-...-.++ ..+ +++
T Consensus 148 ~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~P 226 (369)
T KOG2798|consen 148 ERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIP 226 (369)
T ss_pred cccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCc
Confidence 34467899999999999999999998 78888888776543322210 000 000
Q ss_pred -----------c--eEEEccccccCCC-CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc
Q psy8370 132 -----------D--KCYNVGIQDFKPE-DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN 197 (256)
Q Consensus 132 -----------~--~~~~~d~~~~~~~-~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~ 197 (256)
. ..-.+|+.+.-.. .+.+.||+|+.++.+..- ......++.+..+|||||+.+=..+..-.-..
T Consensus 227 D~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d 304 (369)
T KOG2798|consen 227 DIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKPGGVWINLGPLLYHFED 304 (369)
T ss_pred cccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech--HHHHHHHHHHHHhccCCcEEEeccceeeeccC
Confidence 0 1122444333221 113579999988766555 56678999999999999998865332222111
Q ss_pred ccc-CCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 198 EYD-DEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 198 ~~~-~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
... ....++..+.+++..+....||+++..+
T Consensus 305 ~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 305 THGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 010 1233667899999999999999998766
|
|
| >KOG0820|consensus | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-07 Score=73.53 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=69.7
Q ss_pred HHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCC
Q psy8370 68 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~ 145 (256)
.+..++ ......++..|||+|.|||.++..+++.+. +|+++|+++.|+....+++.... ..+ ++..+|+...+.+
T Consensus 46 v~~~I~-~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kL-qV~~gD~lK~d~P 122 (315)
T KOG0820|consen 46 VIDQIV-EKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKL-QVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHH-hccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCcccee-eEEecccccCCCc
Confidence 455555 566788999999999999999999999887 89999999999999999998655 467 8899998776532
Q ss_pred CCCCceeEEEec
Q psy8370 146 DLNIKYDVIWIQ 157 (256)
Q Consensus 146 ~~~~~~D~V~~~ 157 (256)
.||.++++
T Consensus 123 ----~fd~cVsN 130 (315)
T KOG0820|consen 123 ----RFDGCVSN 130 (315)
T ss_pred ----ccceeecc
Confidence 68999985
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-07 Score=70.86 Aligned_cols=117 Identities=16% Similarity=0.095 Sum_probs=67.4
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHH-------hcC---CCcceEE
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEIL-------KDC---DKLDKCY 135 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~-------~~~---~~i~~~~ 135 (256)
..+..++ +..+..++...+|||||.|......+.. ++.+.+|+|+.+...+.|+...+ ..+ .++ .+.
T Consensus 29 ~~~~~il-~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v-~l~ 106 (205)
T PF08123_consen 29 EFVSKIL-DELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKV-ELI 106 (205)
T ss_dssp HHHHHHH-HHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EE-EEE
T ss_pred HHHHHHH-HHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccc-eee
Confidence 3455555 4456788899999999999988776543 56579999999998877765432 122 244 566
Q ss_pred EccccccCCCCC-CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 136 NVGIQDFKPEDL-NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 136 ~~d~~~~~~~~~-~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.+|+.+...... -...|+|+++...- + +++...|.+....||+|..++..
T Consensus 107 ~gdfl~~~~~~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 107 HGDFLDPDFVKDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp CS-TTTHHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEES
T ss_pred ccCccccHhHhhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEEC
Confidence 777765432110 01479999987632 2 44556667777889998887754
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8e-07 Score=67.60 Aligned_cols=132 Identities=24% Similarity=0.254 Sum_probs=94.0
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
+.+++|||+|.|.-+..++-..+. +++.+|....=+...+......+. ++ .++++-+++...... .||+|++..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv-~i~~~RaE~~~~~~~--~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENV-EIVHGRAEEFGQEKK--QYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCe-EEehhhHhhcccccc--cCcEEEeehc
Confidence 689999999999999887633332 799999998877777777666663 47 889999988865433 2999999877
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCc
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKS 236 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~ 236 (256)
..+..+++-+...+++||.++..-..... --..+........|+.+..... ...|..
T Consensus 145 ------a~L~~l~e~~~pllk~~g~~~~~k~~~~~-------------~e~~e~~~a~~~~~~~~~~~~~-~~~p~~ 201 (215)
T COG0357 145 ------ASLNVLLELCLPLLKVGGGFLAYKGLAGK-------------DELPEAEKAILPLGGQVEKVFS-LTVPEL 201 (215)
T ss_pred ------cchHHHHHHHHHhcccCCcchhhhHHhhh-------------hhHHHHHHHHHhhcCcEEEEEE-eecCCC
Confidence 44557888899999999987653111111 1135566777778888876553 334443
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-07 Score=73.85 Aligned_cols=85 Identities=19% Similarity=0.289 Sum_probs=67.8
Q ss_pred HHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC
Q psy8370 68 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL 147 (256)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~ 147 (256)
.+.+.+ ......++.+|||||+|.|.++..|++++. +|+++|+++.+++..++.+... .++ .++.+|+.......-
T Consensus 18 v~~kIv-~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~-~n~-~vi~~DaLk~d~~~l 93 (259)
T COG0030 18 VIDKIV-EAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPY-DNL-TVINGDALKFDFPSL 93 (259)
T ss_pred HHHHHH-HhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccc-cce-EEEeCchhcCcchhh
Confidence 355555 555667789999999999999999998887 7999999999999999987633 467 899999988876531
Q ss_pred CCceeEEEec
Q psy8370 148 NIKYDVIWIQ 157 (256)
Q Consensus 148 ~~~~D~V~~~ 157 (256)
..++.|+++
T Consensus 94 -~~~~~vVaN 102 (259)
T COG0030 94 -AQPYKVVAN 102 (259)
T ss_pred -cCCCEEEEc
Confidence 035777765
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.8e-07 Score=65.61 Aligned_cols=160 Identities=13% Similarity=0.101 Sum_probs=105.1
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHh-cCC-eEEEEeCCHH----------HHHHHHHHHHhcCCCcceEEEccccccCC
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSK----------FIEQAKEEILKDCDKLDKCYNVGIQDFKP 144 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~-~v~~vD~s~~----------~~~~a~~~~~~~~~~i~~~~~~d~~~~~~ 144 (256)
....++.+|+|+-.|.|++++.++.. +.. .|+++-+.+. +-..+++... .+. +.+..+...+.+
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~---aN~-e~~~~~~~A~~~ 119 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY---ANV-EVIGKPLVALGA 119 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh---hhh-hhhCCcccccCC
Confidence 35788999999999999999988654 222 6666544432 1111111111 122 334444433332
Q ss_pred CCCCCceeEEEechhhh-----ccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHh
Q psy8370 145 EDLNIKYDVIWIQWVLM-----FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 219 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~-----~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (256)
.+ ..|+++.....| .+......+....+++.|||||.+++.++....+.. ........+.+...+.+..+.
T Consensus 120 pq---~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~-~~dt~~~~ri~~a~V~a~vea 195 (238)
T COG4798 120 PQ---KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSG-LSDTITLHRIDPAVVIAEVEA 195 (238)
T ss_pred CC---cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCC-hhhhhhhcccChHHHHHHHHh
Confidence 22 366666543222 223456678999999999999999999877666544 333333445688889999999
Q ss_pred cCCcEEEeeeecCCCCcceeeeEEE
Q psy8370 220 ANLKCVKSEKVTGMPKSLFKIYMFA 244 (256)
Q Consensus 220 ~gf~~~~~~~~~~~~~~~~~~~~~~ 244 (256)
+||.+........+|.+.+.+|++-
T Consensus 196 aGFkl~aeS~ilaNp~D~~~i~v~d 220 (238)
T COG4798 196 AGFKLEAESEILANPDDPRGIWVFD 220 (238)
T ss_pred hcceeeeeehhhcCCCCCCceeecC
Confidence 9999998888888888888888765
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.6e-07 Score=81.38 Aligned_cols=108 Identities=13% Similarity=0.048 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.....+||||||.|.++..++...+. .++|+|+....+..+..+....+ .++ .++..|+..+...-..+++|-|+.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~-~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNF-LLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeE-EEEcCCHHHHHHhcCcccccEEEEE
Confidence 45678999999999999999888765 89999999998888877766655 355 6777776543321112379999987
Q ss_pred hhhhc------cCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 158 WVLMF------ILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 158 ~~l~~------~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+-=-| -..=--..+++.+++.|+|||.+.+.
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 54221 11111246899999999999999985
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.66 E-value=3e-08 Score=83.06 Aligned_cols=99 Identities=19% Similarity=0.281 Sum_probs=67.8
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEE---eCCHHHHHHHHHHHHhcCCCcceEEEc--cccccCCCCCCCceeEEE
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLL---EQSSKFIEQAKEEILKDCDKLDKCYNV--GIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~i~~~~~~--d~~~~~~~~~~~~~D~V~ 155 (256)
.-..+||+|||+|.++..|+.++. .+..+ |..+..++.|.++ .+ ....+ .-..++.+.. .||+|.
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleR------Gv-pa~~~~~~s~rLPfp~~--~fDmvH 186 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALER------GV-PAMIGVLGSQRLPFPSN--AFDMVH 186 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhc------Cc-chhhhhhccccccCCcc--chhhhh
Confidence 345689999999999999988876 33333 3333444444443 12 22222 2356666666 899999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
|...+..+...+ ..+|-++-|+|+|||+++++.+
T Consensus 187 csrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 187 CSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred cccccccchhcc-cceeehhhhhhccCceEEecCC
Confidence 998876664432 4688999999999999999743
|
; GO: 0008168 methyltransferase activity |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.63 E-value=5e-07 Score=66.79 Aligned_cols=107 Identities=17% Similarity=0.152 Sum_probs=79.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCC-CCceeEEEe
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDL-NIKYDVIWI 156 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~-~~~~D~V~~ 156 (256)
-.+.++||+-+|+|.++.+.+.+|+..++.||.+..+....+++....+ .+. .++..|......... .++||+|+.
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~-~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEA-RVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccce-EEEeecHHHHHHhcCCCCcccEEEe
Confidence 5789999999999999999999999999999999999999999998766 566 778888775533222 124999998
Q ss_pred chhhh-ccCHHHHHHHHHH--HhhhcCCCcEEEEEe
Q psy8370 157 QWVLM-FILDEDIIKFLNL--CKQILNKNGIIIIKD 189 (256)
Q Consensus 157 ~~~l~-~~~~~~~~~~l~~--~~~~LkpgG~l~i~~ 189 (256)
.=-++ .+ -+....+.. -...|+|+|.+++..
T Consensus 121 DPPy~~~l--~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 121 DPPYAKGL--LDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCCCccch--hhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 73333 11 111222222 456799999999863
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-07 Score=73.91 Aligned_cols=163 Identities=15% Similarity=0.222 Sum_probs=95.4
Q ss_pred hhhhHHHHHHHHhccCCCCCCCeEEEEcCCC--CHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc
Q psy8370 62 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI--GRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 137 (256)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~--G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~ 137 (256)
.+..+.|+.+.+........-...||||||- ......+++...+ +|+-||.++-.+..++..+.......+.++.+
T Consensus 49 ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~a 128 (267)
T PF04672_consen 49 ARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQA 128 (267)
T ss_dssp HHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE-
T ss_pred HHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeC
Confidence 3445677777662222333667899999993 3456666655432 99999999999999999887654212278999
Q ss_pred cccccCCCCC----CCcee-----EEEechhhhccCH-HHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-------cc-
Q psy8370 138 GIQDFKPEDL----NIKYD-----VIWIQWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EY- 199 (256)
Q Consensus 138 d~~~~~~~~~----~~~~D-----~V~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------~~- 199 (256)
|+.+....-. .+-+| .|++..++|++++ ++...++..++..|.||..|.++......... .+
T Consensus 129 D~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~ 208 (267)
T PF04672_consen 129 DLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYA 208 (267)
T ss_dssp -TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHH
T ss_pred CCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 9877532100 11233 6778889999977 67889999999999999999998765543211 11
Q ss_pred cCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 200 DDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 200 ~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
........++.+++..+|. ||++++
T Consensus 209 ~~~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 209 QAGSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp HCCS----B-HHHHHHCCT--TSEE-T
T ss_pred cCCCCceecCHHHHHHHcC--CCccCC
Confidence 1123345579999999985 888875
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.1e-07 Score=74.52 Aligned_cols=88 Identities=15% Similarity=0.094 Sum_probs=67.1
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~ 146 (256)
+.+++ ....+.++..++|.+||.|..+..++.... .+|+|+|.++.+++.+++++.. ..++ .+++.++.++....
T Consensus 8 l~Evl-~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri-~~i~~~f~~l~~~l 84 (296)
T PRK00050 8 LDEVV-DALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRF-TLVHGNFSNLKEVL 84 (296)
T ss_pred HHHHH-HhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcE-EEEeCCHHHHHHHH
Confidence 44444 333456778999999999999999988753 4899999999999999998765 4567 89999988764322
Q ss_pred C--CCceeEEEechh
Q psy8370 147 L--NIKYDVIWIQWV 159 (256)
Q Consensus 147 ~--~~~~D~V~~~~~ 159 (256)
. ..++|.|++...
T Consensus 85 ~~~~~~vDgIl~DLG 99 (296)
T PRK00050 85 AEGLGKVDGILLDLG 99 (296)
T ss_pred HcCCCccCEEEECCC
Confidence 1 126999998743
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.8e-06 Score=61.91 Aligned_cols=147 Identities=15% Similarity=0.104 Sum_probs=103.2
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFK 143 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~ 143 (256)
..+..++ ..+.++.||||-.|++..++...+.. .+++.|+++..++.|.+++...+ .++ ....+|-....
T Consensus 8 ~~va~~V------~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i-~vr~~dgl~~l 80 (226)
T COG2384 8 TTVANLV------KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERI-DVRLGDGLAVL 80 (226)
T ss_pred HHHHHHH------HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceE-EEeccCCcccc
Confidence 4455566 45566999999999999999888754 89999999999999999998765 345 66677764433
Q ss_pred CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCc
Q psy8370 144 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLK 223 (256)
Q Consensus 144 ~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~ 223 (256)
...+ .+|+|+...+-..+ +..++++-...|+.=-.+++..+ ....++++.+..++|.
T Consensus 81 ~~~d--~~d~ivIAGMGG~l----I~~ILee~~~~l~~~~rlILQPn-----------------~~~~~LR~~L~~~~~~ 137 (226)
T COG2384 81 ELED--EIDVIVIAGMGGTL----IREILEEGKEKLKGVERLILQPN-----------------IHTYELREWLSANSYE 137 (226)
T ss_pred CccC--CcCEEEEeCCcHHH----HHHHHHHhhhhhcCcceEEECCC-----------------CCHHHHHHHHHhCCce
Confidence 3333 69999887664433 45677777777764445665311 1246789999999999
Q ss_pred EEEeeeecCCCCcceeeeEEE
Q psy8370 224 CVKSEKVTGMPKSLFKIYMFA 244 (256)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~ 244 (256)
+..... ..-....|++.+.+
T Consensus 138 I~~E~i-leE~~kiYEIlv~e 157 (226)
T COG2384 138 IKAETI-LEEDGKIYEILVVE 157 (226)
T ss_pred eeeeee-ecccCeEEEEEEEe
Confidence 987543 22234566666555
|
|
| >KOG1663|consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-06 Score=66.18 Aligned_cols=114 Identities=14% Similarity=0.152 Sum_probs=84.1
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQD 141 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~ 141 (256)
.+|+.-++ ....++++||||.=||..+..++...++ +|+++|+++...+.+.+..+..+ .++ .++.+...+
T Consensus 62 g~fl~~li----~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI-~~i~g~a~e 136 (237)
T KOG1663|consen 62 GQFLQMLI----RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKI-TFIEGPALE 136 (237)
T ss_pred HHHHHHHH----HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccccee-eeeecchhh
Confidence 35666666 4457899999999999998888776544 99999999999999988877665 345 777776543
Q ss_pred cC----CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 142 FK----PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 142 ~~----~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.. ...+.+.||+++..+--. ......+++.+++++||++++-.
T Consensus 137 sLd~l~~~~~~~tfDfaFvDadK~-----nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 137 SLDELLADGESGTFDFAFVDADKD-----NYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred hHHHHHhcCCCCceeEEEEccchH-----HHHHHHHHHHhhcccccEEEEec
Confidence 32 222245899999864322 22368889999999999998754
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-06 Score=74.09 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=80.2
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
...++.+|||++||.|.=+.++++... ..++++|+++.-++..++++...+. ++ .+...|...+..... +.||.|
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv-~v~~~D~~~~~~~~~-~~fD~I 187 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNV-ALTHFDGRVFGAALP-ETFDAI 187 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeE-EEEeCchhhhhhhch-hhcCeE
Confidence 456889999999999999988877642 2899999999999999999998773 44 677778776542211 369999
Q ss_pred Eech------hhhc-------cCHHH-------HHHHHHHHhhhcCCCcEEEEE
Q psy8370 155 WIQW------VLMF-------ILDED-------IIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 155 ~~~~------~l~~-------~~~~~-------~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+... ++.. ++.++ -.++|..+.+.|||||.++-+
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9431 2221 11111 256899999999999999875
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.3e-06 Score=62.80 Aligned_cols=149 Identities=12% Similarity=0.020 Sum_probs=90.2
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcC-C-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC-CCceeE
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHF-D-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-NIKYDV 153 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-~~~~D~ 153 (256)
..+.++.+||-+|+.+|....+++.--. . .|++||.|+......-...+.. .++ -.+.+|+........ .+.+|+
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-~NI-iPIl~DAr~P~~Y~~lv~~VDv 146 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-PNI-IPILEDARHPEKYRMLVEMVDV 146 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-TTE-EEEES-TTSGGGGTTTS--EEE
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-Cce-eeeeccCCChHHhhcccccccE
Confidence 4678899999999999999999865422 2 8999999997665555443333 467 677788875542211 237999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCC
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGM 233 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~ 233 (256)
|++.-. .+++..-++.++...||+||.++++-........ ... .-.-++-.+.|++.||++.+...-..+
T Consensus 147 I~~DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t-----~~p-~~vf~~e~~~L~~~~~~~~e~i~LePy 216 (229)
T PF01269_consen 147 IFQDVA----QPDQARIAALNARHFLKPGGHLIISIKARSIDST-----ADP-EEVFAEEVKKLKEEGFKPLEQITLEPY 216 (229)
T ss_dssp EEEE-S----STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SS-----SSH-HHHHHHHHHHHHCTTCEEEEEEE-TTT
T ss_pred EEecCC----ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCc-----CCH-HHHHHHHHHHHHHcCCChheEeccCCC
Confidence 999754 2255667888999999999999986322111110 000 000122345677789999876654444
Q ss_pred CCcc
Q psy8370 234 PKSL 237 (256)
Q Consensus 234 ~~~~ 237 (256)
..++
T Consensus 217 ~~dH 220 (229)
T PF01269_consen 217 ERDH 220 (229)
T ss_dssp STTE
T ss_pred CCCc
Confidence 4443
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.8e-07 Score=74.24 Aligned_cols=99 Identities=13% Similarity=0.093 Sum_probs=79.4
Q ss_pred CCeEEEEcCCCCHhHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEEEech
Q psy8370 82 KTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
+.+|||+.||+|..+..++.+ +..+|+++|+++.+++.++++.+..+. ++ .+.+.|+..+..... ..||+|...-
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~-~v~~~Da~~~l~~~~-~~fDvIdlDP 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENI-EVPNEDAANVLRYRN-RKFHVIDIDP 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcE-EEEchhHHHHHHHhC-CCCCEEEeCC
Confidence 468999999999999999887 567999999999999999999986652 35 788888877654322 3699998864
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+ ..+ ..++..+.+.+++||.+.++
T Consensus 123 -f-Gs~----~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 -F-GTP----APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -C-CCc----HHHHHHHHHhcccCCEEEEE
Confidence 2 221 35888889999999999997
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG1269|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=3e-07 Score=75.71 Aligned_cols=147 Identities=19% Similarity=0.189 Sum_probs=105.2
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
..+...++|+|||.|.............++|++.++.-+.++........ ... .+...|+.+.++++. .||.+.+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~-~~~~~~~~~~~fedn--~fd~v~~ 184 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKC-NFVVADFGKMPFEDN--TFDGVRF 184 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhc-ceehhhhhcCCCCcc--ccCcEEE
Confidence 45566899999999999999877776699999999887776666554332 233 567778888888777 8999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcccc--------CCCC----ceeeCHHHHHHHHHhcCCcE
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD--------DEDS----SVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--------~~~~----~~~~~~~~~~~~l~~~gf~~ 224 (256)
..+..|.+ +....+++++++++|||.++..+........... .... .......+...++...||..
T Consensus 185 ld~~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~ 262 (364)
T KOG1269|consen 185 LEVVCHAP--DLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEH 262 (364)
T ss_pred EeecccCC--cHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccchh
Confidence 99999995 5568999999999999999997654433322111 0000 01124455667777788877
Q ss_pred EEeeee
Q psy8370 225 VKSEKV 230 (256)
Q Consensus 225 ~~~~~~ 230 (256)
...+..
T Consensus 263 ~~~~~d 268 (364)
T KOG1269|consen 263 LKLEKD 268 (364)
T ss_pred hhhccc
Confidence 764433
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-05 Score=59.10 Aligned_cols=148 Identities=13% Similarity=0.029 Sum_probs=96.2
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC-CCceeE
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-NIKYDV 153 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-~~~~D~ 153 (256)
..++.++.+||=+|+.+|....+++.--. ..+++||.|+.+....-...... .++ -.+..|+........ .+..|+
T Consensus 71 ~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-~Ni-~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 71 NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-PNI-IPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-CCc-eeeecccCCcHHhhhhcccccE
Confidence 34678899999999999999999865432 37999999988766555554443 366 677778765432111 236899
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHH----HHHHHhcCCcEEEeee
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQF----CLLFSKANLKCVKSEK 229 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~gf~~~~~~~ 229 (256)
|+..-+ .+++..-+..++...||+||.++++--..+-.. ..+++++ ..-+++.||++.+...
T Consensus 149 iy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdv----------T~dp~~vf~~ev~kL~~~~f~i~e~~~ 214 (231)
T COG1889 149 IYQDVA----QPNQAEILADNAEFFLKKGGYVVIAIKARSIDV----------TADPEEVFKDEVEKLEEGGFEILEVVD 214 (231)
T ss_pred EEEecC----CchHHHHHHHHHHHhcccCCeEEEEEEeecccc----------cCCHHHHHHHHHHHHHhcCceeeEEec
Confidence 988643 225566788899999999997777522221111 1122222 2456778999987765
Q ss_pred ecCCCCccee
Q psy8370 230 VTGMPKSLFK 239 (256)
Q Consensus 230 ~~~~~~~~~~ 239 (256)
-..+..+++-
T Consensus 215 LePye~DH~~ 224 (231)
T COG1889 215 LEPYEKDHAL 224 (231)
T ss_pred cCCcccceEE
Confidence 4545444443
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.49 E-value=5e-07 Score=67.90 Aligned_cols=97 Identities=20% Similarity=0.204 Sum_probs=59.1
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC--------CCCCCc
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP--------EDLNIK 150 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~--------~~~~~~ 150 (256)
++.+|||+||++|.++..++.++ ...|+|+|+.+. ... ..+ ..+.+|+.+... ......
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~-~~~-~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPL-QNV-SFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS--TTE-EBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccc-cce-eeeecccchhhHHHhhhhhccccccC
Confidence 45899999999999999998887 349999999876 000 122 344444432211 110147
Q ss_pred eeEEEechhhhcc---------CHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 151 YDVIWIQWVLMFI---------LDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 151 ~D~V~~~~~l~~~---------~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+|+|++..+.... ...-....+.-+.+.|+|||.+++-
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 9999998721111 0033444556667889999998885
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.8e-07 Score=64.70 Aligned_cols=102 Identities=18% Similarity=0.244 Sum_probs=65.8
Q ss_pred CeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCc-eeEEEec--
Q psy8370 83 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIK-YDVIWIQ-- 157 (256)
Q Consensus 83 ~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~-~D~V~~~-- 157 (256)
..|+|+.||.|..+..++... +.|+++|+++..++.++.+.+-.+ .++ .++++|+.+......... +|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a~hNa~vYGv~~~I-~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECAKHNAEVYGVADNI-DFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGE-EEEES-HHHHGGGB------SEEEE---
T ss_pred CEEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHHHHcCCCCcE-EEEeCCHHHHHhhccccccccEEEECCC
Confidence 369999999999999997664 599999999999999999998775 467 999999988754322112 7999976
Q ss_pred -----------hhh-hccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 158 -----------WVL-MFILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 158 -----------~~l-~~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
+-+ ..+.+-...++++.+.++ .++=.+++
T Consensus 79 WGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~-t~nv~l~L 119 (163)
T PF09445_consen 79 WGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKI-TPNVVLFL 119 (163)
T ss_dssp BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH--S-EEEEE
T ss_pred CCCccccccCccCHHHccCCCCHHHHHHHHHhh-CCCEEEEe
Confidence 112 333333456677665554 44544444
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG1709|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.5e-06 Score=62.96 Aligned_cols=107 Identities=17% Similarity=0.249 Sum_probs=83.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.++.+||++|-|.|...-.+.+..+.+-+.+|..+..++..+..--....++ .+..+-+++..+.-.++.||-|+-...
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nV-iil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENV-IILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccce-EEEecchHhhhccccccCcceeEeech
Confidence 7899999999999999999877777688889999998888777654444566 667777766654333357999998755
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
-.+. +++..+.+.+.++|||+|++-...
T Consensus 179 ~e~y--Edl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 179 SELY--EDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hhHH--HHHHHHHHHHhhhcCCCceEEEec
Confidence 4544 677788899999999999998753
|
|
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.2e-06 Score=71.78 Aligned_cols=108 Identities=17% Similarity=0.293 Sum_probs=87.2
Q ss_pred CCCC-eEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKT-RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~-~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.+.. +++-+|||.-.+...+...|+..|+.+|+|+..++....+......-. .+...|+....++++ +||+|+.-.
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~-~~~~~d~~~l~fedE--SFdiVIdkG 122 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEM-QMVEMDMDQLVFEDE--SFDIVIDKG 122 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcce-EEEEecchhccCCCc--ceeEEEecC
Confidence 3444 999999999999999988999999999999999888877664333345 788999999988877 999999887
Q ss_pred hhhccCH--------HHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 159 VLMFILD--------EDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 159 ~l~~~~~--------~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.++++-. ......+.++++++++||+++....
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 7776622 1234578899999999999887654
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.9e-07 Score=65.56 Aligned_cols=102 Identities=19% Similarity=0.228 Sum_probs=79.0
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
....+.|+|+|+|.++...+. .+++|++++.+|.-...|.+++.-.+ .++ +++.+|+.+..++ ..|+|+|-..
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~-~A~rViAiE~dPk~a~~a~eN~~v~g~~n~-evv~gDA~~y~fe----~ADvvicEml 105 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAH-AAERVIAIEKDPKRARLAEENLHVPGDVNW-EVVVGDARDYDFE----NADVVICEML 105 (252)
T ss_pred hhhceeeccCCcchHHHHHHh-hhceEEEEecCcHHHHHhhhcCCCCCCcce-EEEeccccccccc----ccceeHHHHh
Confidence 348899999999999987644 46799999999999999999875444 466 8999999988773 4699998754
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
=..+-.+.....+..+...|+.++.++=.
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCccccH
Confidence 33333344566788888889988887753
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.9e-06 Score=65.94 Aligned_cols=131 Identities=16% Similarity=0.222 Sum_probs=90.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHH--HHhcC------CCcceEEEccccccCCCCCCCc
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEE--ILKDC------DKLDKCYNVGIQDFKPEDLNIK 150 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~--~~~~~------~~i~~~~~~d~~~~~~~~~~~~ 150 (256)
+...+||-+|.|.|.-++++.+.. ..+++-||.+|.|++.++.. ++..+ .++ .++..|+.+|..... ..
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv-~Vv~dDAf~wlr~a~-~~ 365 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRV-TVVNDDAFQWLRTAA-DM 365 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCee-EEEeccHHHHHHhhc-cc
Confidence 456789999999999999987653 56999999999999999943 33221 467 888899988876544 47
Q ss_pred eeEEEech------hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcE
Q psy8370 151 YDVIWIQW------VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 151 ~D~V~~~~------~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
||+|+... ++..+.. ..+..-+.+.|+++|.+++...... ......| .+.+-++++||.+
T Consensus 366 fD~vIVDl~DP~tps~~rlYS---~eFY~ll~~~l~e~Gl~VvQags~y------~tp~vfw-----~i~aTik~AG~~~ 431 (508)
T COG4262 366 FDVVIVDLPDPSTPSIGRLYS---VEFYRLLSRHLAETGLMVVQAGSPY------FTPRVFW-----RIDATIKSAGYRV 431 (508)
T ss_pred ccEEEEeCCCCCCcchhhhhh---HHHHHHHHHhcCcCceEEEecCCCc------cCCceee-----eehhHHHhCccee
Confidence 99999652 2222211 2466778899999999998532111 1111222 1345678899876
Q ss_pred EE
Q psy8370 225 VK 226 (256)
Q Consensus 225 ~~ 226 (256)
.-
T Consensus 432 ~P 433 (508)
T COG4262 432 WP 433 (508)
T ss_pred ee
Confidence 53
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.8e-06 Score=59.07 Aligned_cols=97 Identities=18% Similarity=0.133 Sum_probs=66.4
Q ss_pred hHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHH-----hcCCeEEEEeCCHHHHHHHHHHHHhcC----CCcceEE
Q psy8370 65 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLA-----KHFDKIDLLEQSSKFIEQAKEEILKDC----DKLDKCY 135 (256)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~-----~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~i~~~~ 135 (256)
..+++..+........+..+|+|+|||.|+++..++. ...-+|+++|.++..++.+..+.+... .++ .+.
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~-~~~ 87 (141)
T PF13679_consen 9 MAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRL-SFI 87 (141)
T ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccc-hhh
Confidence 3345555542112346788999999999999999987 322399999999999999988877544 223 445
Q ss_pred EccccccCCCCCCCceeEEEechhhhccCH
Q psy8370 136 NVGIQDFKPEDLNIKYDVIWIQWVLMFILD 165 (256)
Q Consensus 136 ~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~ 165 (256)
..+..+... . ...++++.-+....+.+
T Consensus 88 ~~~~~~~~~-~--~~~~~~vgLHaCG~Ls~ 114 (141)
T PF13679_consen 88 QGDIADESS-S--DPPDILVGLHACGDLSD 114 (141)
T ss_pred ccchhhhcc-c--CCCeEEEEeecccchHH
Confidence 555443322 2 25788888888777743
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.3e-05 Score=58.93 Aligned_cols=141 Identities=17% Similarity=0.046 Sum_probs=90.2
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC------CCC
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED------LNI 149 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~------~~~ 149 (256)
-..++.+|+|||+-.|.++..+++.... .|+++|+.|- ... ..+ .++++|+.+..... +..
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~~~-~~V-~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------KPI-PGV-IFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------ccC-CCc-eEEeeeccCccHHHHHHHHcCCC
Confidence 3577899999999999999998777543 4999999873 111 246 78888887654321 123
Q ss_pred ceeEEEechhh--------hccCH-HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhc
Q psy8370 150 KYDVIWIQWVL--------MFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA 220 (256)
Q Consensus 150 ~~D~V~~~~~l--------~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (256)
.+|+|++...- +|... .-....++-+..+|+|||.+++-.... ...+++...++.
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg---------------~~~~~~l~~~~~- 174 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG---------------EDFEDLLKALRR- 174 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC---------------CCHHHHHHHHHH-
Confidence 47999976432 33322 223446667788999999999853222 123556666654
Q ss_pred CCcEEEeeeecCCCCcceeeeEEEe
Q psy8370 221 NLKCVKSEKVTGMPKSLFKIYMFAL 245 (256)
Q Consensus 221 gf~~~~~~~~~~~~~~~~~~~~~~l 245 (256)
.|+.+........-...-.+++.+.
T Consensus 175 ~F~~v~~~KP~aSR~~S~E~y~v~~ 199 (205)
T COG0293 175 LFRKVKIFKPKASRKRSREIYLVAK 199 (205)
T ss_pred hhceeEEecCccccCCCceEEEEEe
Confidence 5777776654444334445555553
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-05 Score=58.87 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=70.3
Q ss_pred EEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEccccc--cCCCCCCCceeEEEechh
Q psy8370 85 VLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQD--FKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 85 vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~-i~~~~~~d~~~--~~~~~~~~~~D~V~~~~~ 159 (256)
++|+|||+|... .+..... ..++++|+++.++..++......... + .+...+... .+.... ..||++.+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLV-DFVVADALGGVLPFEDS-ASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCce-EEEEeccccCCCCCCCC-CceeEEeeeee
Confidence 999999999976 3323322 27899999999999855554331111 3 667777665 333331 26999944444
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCC
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 194 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 194 (256)
.++.. ....+.++.+.++|+|.+++.......
T Consensus 129 ~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 129 LHLLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hhcCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 55553 568999999999999999997654433
|
|
| >KOG2915|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.6e-05 Score=61.70 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=79.2
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCce
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
.+...++.+|||-|+|+|.++..++....+ .++.+|+...-.+.|++.++..+ +++ .+..-|+...-+......+
T Consensus 100 ~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~v-t~~hrDVc~~GF~~ks~~a 178 (314)
T KOG2915|consen 100 MLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNV-TVTHRDVCGSGFLIKSLKA 178 (314)
T ss_pred HhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcce-EEEEeecccCCcccccccc
Confidence 336899999999999999999999776433 89999999999999999998776 456 8888888766554433578
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
|.|+...- .+ -.++..++.+||.+|.-++
T Consensus 179 DaVFLDlP-----aP--w~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 179 DAVFLDLP-----AP--WEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred ceEEEcCC-----Ch--hhhhhhhHHHhhhcCceEE
Confidence 99887632 11 2466677788988875554
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.6e-06 Score=73.66 Aligned_cols=113 Identities=11% Similarity=-0.020 Sum_probs=76.2
Q ss_pred ccCCC-CCCCeEEEEcCCCCHhHHHHHHhc-------------------------------------------CCeEEEE
Q psy8370 75 QKKSD-PGKTRVLDVGAGIGRISKYLLAKH-------------------------------------------FDKIDLL 110 (256)
Q Consensus 75 ~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~-------------------------------------------~~~v~~v 110 (256)
..... .++..++|.+||+|.+.+..+... ...++|+
T Consensus 183 ~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~ 262 (702)
T PRK11783 183 LRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGS 262 (702)
T ss_pred HHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEE
Confidence 44444 457899999999999998875421 0158999
Q ss_pred eCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechhh-hcc-CHHHHHHHHHHHhhhc---CCCc
Q psy8370 111 EQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL-MFI-LDEDIIKFLNLCKQIL---NKNG 183 (256)
Q Consensus 111 D~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l-~~~-~~~~~~~~l~~~~~~L---kpgG 183 (256)
|+++.+++.|+.+....+ ..+ .+..+|+.++......+++|+|+++-=. ..+ ...+...+.+.+.+.+ .+|+
T Consensus 263 Did~~av~~A~~N~~~~g~~~~i-~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~ 341 (702)
T PRK11783 263 DIDPRVIQAARKNARRAGVAELI-TFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGW 341 (702)
T ss_pred ECCHHHHHHHHHHHHHcCCCcce-EEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999998776 245 8889999887643322379999998211 112 1133334444443433 4787
Q ss_pred EEEEE
Q psy8370 184 IIIIK 188 (256)
Q Consensus 184 ~l~i~ 188 (256)
.+.+.
T Consensus 342 ~~~ll 346 (702)
T PRK11783 342 NAALF 346 (702)
T ss_pred eEEEE
Confidence 77664
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.35 E-value=6e-06 Score=67.60 Aligned_cols=121 Identities=17% Similarity=0.071 Sum_probs=75.8
Q ss_pred hhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHh--------cCCeEEEEeCCHHHHHHHHHHHHhcC--CCcce
Q psy8370 64 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK--------HFDKIDLLEQSSKFIEQAKEEILKDC--DKLDK 133 (256)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~ 133 (256)
...+++..++ ...++.+|+|.+||+|.++..+... ...+++|+|+++.+...++-++.-.+ .....
T Consensus 33 ~i~~l~~~~~----~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~ 108 (311)
T PF02384_consen 33 EIVDLMVKLL----NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNIN 108 (311)
T ss_dssp HHHHHHHHHH----TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCE
T ss_pred HHHHHHHhhh----hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccc
Confidence 3345555555 5667778999999999998887652 23389999999999999987765443 12114
Q ss_pred EEEccccccCCCCCCCceeEEEech--hhh-c----c-----------CH-HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 134 CYNVGIQDFKPEDLNIKYDVIWIQW--VLM-F----I-----------LD-EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 134 ~~~~d~~~~~~~~~~~~~D~V~~~~--~l~-~----~-----------~~-~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+...|....+.......||+|+++- ... + . +. ..-..++..+.+.|++||.+.+.
T Consensus 109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp EEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 6777765444332123799999872 111 0 0 00 11135889999999999987765
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.1e-06 Score=66.71 Aligned_cols=92 Identities=16% Similarity=0.179 Sum_probs=67.5
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC-CCceeEEEe
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-NIKYDVIWI 156 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-~~~~D~V~~ 156 (256)
...++..|+|||+|+|.++..++..+ .+++++|+++.+.+..++++.. ..++ +++.+|+.++..... ......|++
T Consensus 27 ~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~-~~~~-~vi~~D~l~~~~~~~~~~~~~~vv~ 103 (262)
T PF00398_consen 27 DLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS-NPNV-EVINGDFLKWDLYDLLKNQPLLVVG 103 (262)
T ss_dssp TCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT-CSSE-EEEES-TTTSCGGGHCSSSEEEEEE
T ss_pred CCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh-cccc-eeeecchhccccHHhhcCCceEEEE
Confidence 46688999999999999999998888 6999999999999999988763 2477 899999998876541 013556666
Q ss_pred chhhhccCHHHHHHHHHHHhh
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQ 177 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~ 177 (256)
+--. ++. ..++.++..
T Consensus 104 NlPy-~is----~~il~~ll~ 119 (262)
T PF00398_consen 104 NLPY-NIS----SPILRKLLE 119 (262)
T ss_dssp EETG-TGH----HHHHHHHHH
T ss_pred Eecc-cch----HHHHHHHhh
Confidence 5332 332 245555544
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.9e-05 Score=64.81 Aligned_cols=117 Identities=16% Similarity=0.028 Sum_probs=84.9
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC----------------------------------------eEE
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD----------------------------------------KID 108 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~----------------------------------------~v~ 108 (256)
+...+....+..++..++|--||+|.+++..+..+.. .++
T Consensus 179 LAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 179 LAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 4433336667777889999999999999987765521 277
Q ss_pred EEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEech--hhhccCHH----HHHHHHHHHhhhcC
Q psy8370 109 LLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQW--VLMFILDE----DIIKFLNLCKQILN 180 (256)
Q Consensus 109 ~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~--~l~~~~~~----~~~~~l~~~~~~Lk 180 (256)
|+|+++.+++.|+.+.+..+ +.| .|.+.|+..+.+... .+|+|+|+- ..---... -...+.+.+.+.++
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I-~f~~~d~~~l~~~~~--~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~ 335 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLI-EFKQADATDLKEPLE--EYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLA 335 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceE-EEEEcchhhCCCCCC--cCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999877 345 999999999987644 799999982 11111111 23345566667777
Q ss_pred CCcEEEEE
Q psy8370 181 KNGIIIIK 188 (256)
Q Consensus 181 pgG~l~i~ 188 (256)
--+.++++
T Consensus 336 ~ws~~v~t 343 (381)
T COG0116 336 GWSRYVFT 343 (381)
T ss_pred CCceEEEE
Confidence 77777775
|
|
| >KOG1331|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.6e-07 Score=69.17 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=77.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
..+..++|+|||.|..... .... -++|.|.+...+..++.. ... ....+|+...+.... +||.+++..+
T Consensus 44 ~~gsv~~d~gCGngky~~~--~p~~-~~ig~D~c~~l~~~ak~~-----~~~-~~~~ad~l~~p~~~~--s~d~~lsiav 112 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV--NPLC-LIIGCDLCTGLLGGAKRS-----GGD-NVCRADALKLPFREE--SFDAALSIAV 112 (293)
T ss_pred CCcceeeecccCCcccCcC--CCcc-eeeecchhhhhccccccC-----CCc-eeehhhhhcCCCCCC--ccccchhhhh
Confidence 4578899999999976553 1222 689999999888777653 111 367789988888777 8999999999
Q ss_pred hhccCH-HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 160 LMFILD-EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 160 l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+||+.. .....+++++.+.++|||...+.
T Consensus 113 ihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 113 IHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999955 56677999999999999997775
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.1e-05 Score=63.70 Aligned_cols=72 Identities=14% Similarity=0.229 Sum_probs=52.8
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
..++.++|||||++|.++..++++|. +|++||.++ |-.. +... .++ .....|...+.+... .+|.++|..
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~~~----L~~~-~~V-~h~~~d~fr~~p~~~--~vDwvVcDm 278 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MAQS----LMDT-GQV-EHLRADGFKFRPPRK--NVDWLVCDM 278 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cCHh----hhCC-CCE-EEEeccCcccCCCCC--CCCEEEEec
Confidence 36789999999999999999999998 999999654 2221 2222 466 666666655554333 799999987
Q ss_pred hh
Q psy8370 159 VL 160 (256)
Q Consensus 159 ~l 160 (256)
+.
T Consensus 279 ve 280 (357)
T PRK11760 279 VE 280 (357)
T ss_pred cc
Confidence 73
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.1e-05 Score=62.24 Aligned_cols=104 Identities=13% Similarity=0.203 Sum_probs=65.4
Q ss_pred CCCeEEEEcCCCCHhHHHHHH-h-cC-CeEEEEeCCHHHHHHHHHHHH---hcCCCcceEEEccccccCCCCCCCceeEE
Q psy8370 81 GKTRVLDVGAGIGRISKYLLA-K-HF-DKIDLLEQSSKFIEQAKEEIL---KDCDKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~-~-~~-~~v~~vD~s~~~~~~a~~~~~---~~~~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
.+.+|+=||||.=-++..+.. . +. ..++++|+++.+.+.+++... ..+.++ .++.+|..+...... .||+|
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m-~f~~~d~~~~~~dl~--~~DvV 196 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRM-SFITADVLDVTYDLK--EYDVV 196 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSE-EEEES-GGGG-GG------SEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCe-EEEecchhccccccc--cCCEE
Confidence 456999999997766655544 3 22 279999999999999999877 233567 899999887764444 79999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+.......- .++..++++++.+.++||..+++.
T Consensus 197 ~lAalVg~~-~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 197 FLAALVGMD-AEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EE-TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEhhhcccc-cchHHHHHHHHHhhCCCCcEEEEe
Confidence 986544322 235578999999999999999885
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.8e-05 Score=69.41 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcC---------CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccC---CCCC
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHF---------DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFK---PEDL 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~---------~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~---~~~~ 147 (256)
...+|||.|||+|.+...++.... ..++|+|+++.+++.++.++...+ ..+ .+...|..... ....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~-~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEI-NVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCc-eeeecccccccccccccc
Confidence 457999999999999988876431 278999999999999998876554 123 34444432211 1111
Q ss_pred CCceeEEEec
Q psy8370 148 NIKYDVIWIQ 157 (256)
Q Consensus 148 ~~~~D~V~~~ 157 (256)
.+.||+|+.+
T Consensus 110 ~~~fD~IIgN 119 (524)
T TIGR02987 110 LDLFDIVITN 119 (524)
T ss_pred cCcccEEEeC
Confidence 2379999987
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.6e-07 Score=62.36 Aligned_cols=82 Identities=18% Similarity=0.153 Sum_probs=58.8
Q ss_pred cCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc------------cccCCCCceeeC
Q psy8370 142 FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------------EYDDEDSSVVRS 209 (256)
Q Consensus 142 ~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------------~~~~~~~~~~~~ 209 (256)
..+.+. +.|+|++.++++|++.++-..++++|+++|||||+|-++.+....... +-+...+.+..+
T Consensus 41 ~~F~dn--s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v~t 118 (185)
T COG4627 41 SMFEDN--SVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIVKT 118 (185)
T ss_pred ccCCCc--chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHHHH
Confidence 334444 899999999999999988899999999999999999998543322111 011112233357
Q ss_pred HHHHHHHHHhcCCcEE
Q psy8370 210 LPQFCLLFSKANLKCV 225 (256)
Q Consensus 210 ~~~~~~~l~~~gf~~~ 225 (256)
.+.+...+..+||.+.
T Consensus 119 ~r~m~n~~m~~~~~~k 134 (185)
T COG4627 119 MRMMFNGFMDAGFVVK 134 (185)
T ss_pred HHHHHHHHHhhhheeh
Confidence 7788888888888764
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00034 Score=58.14 Aligned_cols=146 Identities=14% Similarity=0.089 Sum_probs=96.3
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 142 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~ 142 (256)
.++...++ +..++.+|||+.++.|.=+.++++.... .|+++|.++.=++..++++...+.........|....
T Consensus 145 S~l~a~~L----~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~ 220 (355)
T COG0144 145 SQLPALVL----DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRL 220 (355)
T ss_pred HHHHHHHc----CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccc
Confidence 34455455 7788999999999999988888776532 5699999999999999999988733225667676544
Q ss_pred CCCCC-CCceeEEEec------hhhh-------ccCHH-------HHHHHHHHHhhhcCCCcEEEEEecccCCCCccccC
Q psy8370 143 KPEDL-NIKYDVIWIQ------WVLM-------FILDE-------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDD 201 (256)
Q Consensus 143 ~~~~~-~~~~D~V~~~------~~l~-------~~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~ 201 (256)
+.... .+.||.|+.. .++. ..+.. -..++|..+.+.|||||.++-++-.....
T Consensus 221 ~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e------ 294 (355)
T COG0144 221 AELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE------ 294 (355)
T ss_pred cccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh------
Confidence 32211 1259999854 2221 11111 13458999999999999999863221111
Q ss_pred CCCceeeCHHHHHHHHHhc-CCcEEEe
Q psy8370 202 EDSSVVRSLPQFCLLFSKA-NLKCVKS 227 (256)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~-gf~~~~~ 227 (256)
-+.+.+..++++. +|+++..
T Consensus 295 ------ENE~vV~~~L~~~~~~~~~~~ 315 (355)
T COG0144 295 ------ENEEVVERFLERHPDFELEPV 315 (355)
T ss_pred ------cCHHHHHHHHHhCCCceeecc
Confidence 2345666777765 5655543
|
|
| >KOG2187|consensus | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.4e-05 Score=67.46 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=79.8
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~ 145 (256)
+.+-.++.+....+.+..++|+-||||.++..+ +++...|+|+|+++++++.|+.+...++ .+. .|+++-+++..+.
T Consensus 369 evLys~i~e~~~l~~~k~llDv~CGTG~iglal-a~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa-~Fi~gqaE~~~~s 446 (534)
T KOG2187|consen 369 EVLYSTIGEWAGLPADKTLLDVCCGTGTIGLAL-ARGVKRVIGVEISPDAVEDAEKNAQINGISNA-TFIVGQAEDLFPS 446 (534)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEeecCCceehhh-hccccceeeeecChhhcchhhhcchhcCccce-eeeecchhhccch
Confidence 334444434457788899999999999999998 5666799999999999999999988776 455 8999966665432
Q ss_pred CCCC---ceeEEEechhhhccCHH-HHHHHHHHHhhhcCCCcEEEEEeccc
Q psy8370 146 DLNI---KYDVIWIQWVLMFILDE-DIIKFLNLCKQILNKNGIIIIKDNVA 192 (256)
Q Consensus 146 ~~~~---~~D~V~~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~ 192 (256)
.... +=++|...+- +.. --.++++.+++.-++--.++++.+..
T Consensus 447 l~~~~~~~~~~v~iiDP----pR~Glh~~~ik~l~~~~~~~rlvyvSCn~~ 493 (534)
T KOG2187|consen 447 LLTPCCDSETLVAIIDP----PRKGLHMKVIKALRAYKNPRRLVYVSCNPH 493 (534)
T ss_pred hcccCCCCCceEEEECC----CcccccHHHHHHHHhccCccceEEEEcCHH
Confidence 2111 2242222210 001 11256677776666777777775433
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.9e-05 Score=53.70 Aligned_cols=81 Identities=19% Similarity=0.214 Sum_probs=57.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechhhhccCH---------HHHHHHHHH
Q psy8370 106 KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD---------EDIIKFLNL 174 (256)
Q Consensus 106 ~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~---------~~~~~~l~~ 174 (256)
+|+|+|+.+++++..++++...+ .++ .++..+-+.+...-..+++|+++.+ |-++|. +....+++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v-~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRV-TLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGE-EEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcE-EEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHH
Confidence 58999999999999999999775 356 7887776666542221379999987 333332 345678999
Q ss_pred HhhhcCCCcEEEEEe
Q psy8370 175 CKQILNKNGIIIIKD 189 (256)
Q Consensus 175 ~~~~LkpgG~l~i~~ 189 (256)
+.+.|+|||.+.++-
T Consensus 78 al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 78 ALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHEEEEEEEEEEE
T ss_pred HHHhhccCCEEEEEE
Confidence 999999999999974
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.7e-05 Score=56.05 Aligned_cols=57 Identities=26% Similarity=0.347 Sum_probs=46.0
Q ss_pred eEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccc
Q psy8370 84 RVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQD 141 (256)
Q Consensus 84 ~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~ 141 (256)
+++|+|||.|..+..++..+.. +++++|+++.+.+.+++++...+ .++ .++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v-~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNV-VLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcE-EEEEeeeeC
Confidence 4899999999999999887764 79999999999999999987654 235 666655543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.1e-05 Score=62.24 Aligned_cols=128 Identities=16% Similarity=0.060 Sum_probs=73.6
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 144 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~ 144 (256)
..|..+. .......+++|||+|.|.|.-+..+-.-.+ ..++.++.|+..-+......+.....-..+...|+..-..
T Consensus 100 asL~~L~-~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl 178 (484)
T COG5459 100 ASLDELQ-KRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRL 178 (484)
T ss_pred HHHHHHH-HhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhcc
Confidence 3344444 223455678899999999987776522222 2788889888766655544333221111333334332211
Q ss_pred CCC-CCceeEEEechhhhcc-CHHHHHHHHHHHhhhcCCCcEEEEEecccCCC
Q psy8370 145 EDL-NIKYDVIWIQWVLMFI-LDEDIIKFLNLCKQILNKNGIIIIKDNVASGV 195 (256)
Q Consensus 145 ~~~-~~~~D~V~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 195 (256)
+-. ...|++++..+-+-+. ....+...++.++.++.|||.|++++...+.+
T Consensus 179 ~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 179 SLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred CCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 111 1246666655433333 22345569999999999999999987554443
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00012 Score=56.62 Aligned_cols=138 Identities=12% Similarity=0.006 Sum_probs=78.5
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
...+.+|+|||||.--++........ ..++|.|++..+++.....+...+... .....|...-.+.. ..|+.+..
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~-~~~v~Dl~~~~~~~---~~DlaLll 178 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPH-DARVRDLLSDPPKE---PADLALLL 178 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CE-EEEEE-TTTSHTTS---EESEEEEE
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCc-ceeEeeeeccCCCC---CcchhhHH
Confidence 35589999999999998887654433 299999999999999999888776566 67777776554433 58999998
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
=+++-+........+ ++.+.++- =.++++.+..+.... ..+....-...+...+...|+.+.+
T Consensus 179 K~lp~le~q~~g~g~-~ll~~~~~-~~~vVSfPtrSL~gR----~~gm~~~y~~~fe~~~~~~~~~~~~ 241 (251)
T PF07091_consen 179 KTLPCLERQRRGAGL-ELLDALRS-PHVVVSFPTRSLGGR----NKGMEQTYSAWFEALAAERGWIVDR 241 (251)
T ss_dssp T-HHHHHHHSTTHHH-HHHHHSCE-SEEEEEEES-----------TTHHHCHHHHHHHHCCTTCEEEEE
T ss_pred HHHHHHHHHhcchHH-HHHHHhCC-CeEEEeccccccccC----ccccccCHHHHHHHhcccCCceeee
Confidence 777777322211222 22333332 255555444433321 0111112234555666666766443
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0014 Score=50.52 Aligned_cols=134 Identities=15% Similarity=0.108 Sum_probs=75.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
-.+++||=+|=+.-. +..++. ..+.+|+.+|+++..++..++.....+.++ ..+..|+.+..|..-.++||++++.=
T Consensus 43 L~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i-~~~~~DlR~~LP~~~~~~fD~f~TDP 120 (243)
T PF01861_consen 43 LEGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPI-EAVHYDLRDPLPEELRGKFDVFFTDP 120 (243)
T ss_dssp STT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--E-EEE---TTS---TTTSS-BSEEEE--
T ss_pred ccCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCce-EEEEecccccCCHHHhcCCCEEEeCC
Confidence 468899999855433 333333 345599999999999999999998888777 99999999887765446999999872
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCc-EEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNG-IIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG-~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
. .+.+.+.-++.+....||..| ..+++-.... .+ .....++++.+.+.||.+.+...
T Consensus 121 P---yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~----------~s-~~~~~~~Q~~l~~~gl~i~dii~ 178 (243)
T PF01861_consen 121 P---YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKE----------AS-PDKWLEVQRFLLEMGLVITDIIP 178 (243)
T ss_dssp ----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT-------------HHHHHHHHHHHHTS--EEEEEEE
T ss_pred C---CCHHHHHHHHHHHHHHhCCCCceEEEEEecCc----------Cc-HHHHHHHHHHHHHCCcCHHHHHh
Confidence 2 111455678889999998766 4444311111 00 00123677888899998887654
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG1501|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=4.7e-05 Score=62.97 Aligned_cols=97 Identities=22% Similarity=0.262 Sum_probs=69.2
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
....|||||+|||.++...+..|+..|+++|.-..|.+.|++...+.+ ++| .++..--.+...... -..|+++...
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI-~vInkrStev~vg~~-~RadI~v~e~ 143 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKI-NVINKRSTEVKVGGS-SRADIAVRED 143 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccce-eeeccccceeeecCc-chhhhhhHhh
Confidence 345789999999999999988998899999999999999999988776 455 555544443332211 1478877766
Q ss_pred hhhccCHHHHHHHHHHHhhhc
Q psy8370 159 VLMFILDEDIIKFLNLCKQIL 179 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~L 179 (256)
+...+..+.....++++++.|
T Consensus 144 fdtEligeGalps~qhAh~~L 164 (636)
T KOG1501|consen 144 FDTELIGEGALPSLQHAHDML 164 (636)
T ss_pred hhhhhhccccchhHHHHHHHh
Confidence 655554343445666666665
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0002 Score=55.64 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=63.7
Q ss_pred CCCCCC--eEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc------C----CCcceEEEccccccCCC
Q psy8370 78 SDPGKT--RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD------C----DKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 78 ~~~~~~--~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~----~~i~~~~~~d~~~~~~~ 145 (256)
...++. +|||.-+|+|..+..++.+|+ +|+++|-++.+....+..+... + .++ +++..|..++...
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri-~l~~~da~~~L~~ 160 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERL-QLIHASSLTALTD 160 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceE-EEEeCcHHHHHhh
Confidence 445555 899999999999999999998 5999999999988888877653 1 245 7788888777543
Q ss_pred CCCCceeEEEechhhhc
Q psy8370 146 DLNIKYDVIWIQWVLMF 162 (256)
Q Consensus 146 ~~~~~~D~V~~~~~l~~ 162 (256)
.. .+||+|+..=++.+
T Consensus 161 ~~-~~fDVVYlDPMfp~ 176 (250)
T PRK10742 161 IT-PRPQVVYLDPMFPH 176 (250)
T ss_pred CC-CCCcEEEECCCCCC
Confidence 22 37999998755444
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00048 Score=55.46 Aligned_cols=138 Identities=17% Similarity=0.117 Sum_probs=92.7
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...++.+|||+.++.|.=+.++++... ..++++|+++.-+...+++....+.........|.....+......||.|+
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vl 161 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVL 161 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhh
Confidence 567889999999999998888877643 399999999999999999998877433256667776663221112599999
Q ss_pred ec------hhhhccCH--------------HHHHHHHHHHhhhc----CCCcEEEEEecccCCCCccccCCCCceeeCHH
Q psy8370 156 IQ------WVLMFILD--------------EDIIKFLNLCKQIL----NKNGIIIIKDNVASGVKNEYDDEDSSVVRSLP 211 (256)
Q Consensus 156 ~~------~~l~~~~~--------------~~~~~~l~~~~~~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 211 (256)
.. .++..-++ ....++|+.+.+.+ +|||.++-+.-..... -+.+
T Consensus 162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e------------ENE~ 229 (283)
T PF01189_consen 162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE------------ENEE 229 (283)
T ss_dssp EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG------------GTHH
T ss_pred cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH------------HHHH
Confidence 64 12221111 11346899999999 9999999863221111 1345
Q ss_pred HHHHHHHhc-CCcEEEe
Q psy8370 212 QFCLLFSKA-NLKCVKS 227 (256)
Q Consensus 212 ~~~~~l~~~-gf~~~~~ 227 (256)
.+...++++ .|+++..
T Consensus 230 vV~~fl~~~~~~~l~~~ 246 (283)
T PF01189_consen 230 VVEKFLKRHPDFELVPI 246 (283)
T ss_dssp HHHHHHHHSTSEEEECC
T ss_pred HHHHHHHhCCCcEEEec
Confidence 666677776 5655543
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0015 Score=53.90 Aligned_cols=149 Identities=11% Similarity=0.022 Sum_probs=79.7
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhc---------------CC--eEEEEeCCHHHHHHHHHHHHhc------CCCc-ce
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKH---------------FD--KIDLLEQSSKFIEQAKEEILKD------CDKL-DK 133 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~---------------~~--~v~~vD~s~~~~~~a~~~~~~~------~~~i-~~ 133 (256)
.....-+|+|+||.+|..+..+...- .+ +|+.-|.-..--...-+.+... ..++ ..
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 45667899999999999887765421 01 6777887654333332222211 1121 13
Q ss_pred EEEccccccCCCCCCCceeEEEechhhhccCH-------------------------------------HHHHHHHHHHh
Q psy8370 134 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD-------------------------------------EDIIKFLNLCK 176 (256)
Q Consensus 134 ~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~-------------------------------------~~~~~~l~~~~ 176 (256)
-+.+++-+-..+.. +.|++++..++||++. .++..+|+.=+
T Consensus 93 gvpgSFy~rLfP~~--Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra 170 (334)
T PF03492_consen 93 GVPGSFYGRLFPSN--SVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARA 170 (334)
T ss_dssp EEES-TTS--S-TT---EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCCC--ceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666666666 8999999999998742 12344555556
Q ss_pred hhcCCCcEEEEEecccCCCCcccc-----------------------------CCCCceeeCHHHHHHHHHhcC-CcEEE
Q psy8370 177 QILNKNGIIIIKDNVASGVKNEYD-----------------------------DEDSSVVRSLPQFCLLFSKAN-LKCVK 226 (256)
Q Consensus 177 ~~LkpgG~l~i~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~l~~~g-f~~~~ 226 (256)
+-|+|||.+++.-.........-. ..-..+.++.+|+...+++.| |++..
T Consensus 171 ~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~ 250 (334)
T PF03492_consen 171 EELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEK 250 (334)
T ss_dssp HHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEE
T ss_pred heeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEE
Confidence 778999999998654444111000 011234468999999988765 66654
Q ss_pred ee
Q psy8370 227 SE 228 (256)
Q Consensus 227 ~~ 228 (256)
.+
T Consensus 251 le 252 (334)
T PF03492_consen 251 LE 252 (334)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.71 E-value=1.6e-05 Score=54.13 Aligned_cols=98 Identities=23% Similarity=0.245 Sum_probs=41.9
Q ss_pred EEEcCCCCHhHHHHHHhc---C-CeEEEEeCCHHHHHHHHHHHHh--cCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 86 LDVGAGIGRISKYLLAKH---F-DKIDLLEQSSKFIEQAKEEILK--DCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 86 LDiG~G~G~~~~~l~~~~---~-~~v~~vD~s~~~~~~a~~~~~~--~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
||||+..|..+..+++.. . .+++++|..+. .+..++.++. ...++ .++.++..+..+....+++|+++....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~-~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRV-EFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTE-EEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeE-EEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 689999999888876532 1 26999999995 2223333322 22356 888888765532111138999998753
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
-. . +.....++.+.+.|+|||.+++-
T Consensus 79 H~-~--~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 HS-Y--EAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ---H--HHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CC-H--HHHHHHHHHHHHHcCCCeEEEEe
Confidence 11 1 34567888999999999999874
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00027 Score=56.99 Aligned_cols=88 Identities=18% Similarity=0.158 Sum_probs=66.3
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC--
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE-- 145 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~-- 145 (256)
+.+++ ......++..++|--+|.|..+..++... ..+|+|+|.++.+++.+++++.....++ .++++++.++...
T Consensus 9 l~Evl-~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~-~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 9 LDEVV-EGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRV-VLIHDNFANFFEHLD 86 (305)
T ss_pred HHHHH-HhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcE-EEEeCCHHHHHHHHH
Confidence 44444 44456778899999999999999998763 2489999999999999999887665577 8888888765421
Q ss_pred -CCCCceeEEEech
Q psy8370 146 -DLNIKYDVIWIQW 158 (256)
Q Consensus 146 -~~~~~~D~V~~~~ 158 (256)
.+..++|.|+...
T Consensus 87 ~~~~~~vDgIl~DL 100 (305)
T TIGR00006 87 ELLVTKIDGILVDL 100 (305)
T ss_pred hcCCCcccEEEEec
Confidence 1123688888653
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00043 Score=47.50 Aligned_cols=48 Identities=19% Similarity=0.119 Sum_probs=43.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD 127 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 127 (256)
..+++|+|||++-|..+++++-+|++.|+++++++...+..+++.+..
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 568999999999999999999999999999999999999998877653
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0031 Score=50.67 Aligned_cols=149 Identities=13% Similarity=0.115 Sum_probs=92.8
Q ss_pred eEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhhcc
Q psy8370 84 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFI 163 (256)
Q Consensus 84 ~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~ 163 (256)
+++|+-||.|.+...+...|+..+.++|+++.+.+..+.++.. ..+..|+.+.....-.+.+|+++...-+...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~------~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC------CCccCccccCchhhcCCCCCEEEeCCCChhh
Confidence 6899999999999998888887889999999999888877642 2466777776543201369999976322211
Q ss_pred C--------HHHHHHHHH---HHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee---
Q psy8370 164 L--------DEDIIKFLN---LCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK--- 229 (256)
Q Consensus 164 ~--------~~~~~~~l~---~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~--- 229 (256)
+ .+....++. ++.+.++|. +++.++....... ........+.+.|++.||.+.....
T Consensus 76 S~ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~~-------~~~~~~~~i~~~l~~~GY~~~~~~l~a~ 146 (275)
T cd00315 76 SIAGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLTH-------DNGNTLKVILNTLEELGYNVYWKLLNAS 146 (275)
T ss_pred hHHhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhcc-------CchHHHHHHHHHHHhCCcEEEEEEEEHH
Confidence 1 011222333 333444664 5555554433211 0112356788889999998765443
Q ss_pred ecCCCCcceeeeEEEecc
Q psy8370 230 VTGMPKSLFKIYMFALKP 247 (256)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~ 247 (256)
..+.|..--.+++.+.+.
T Consensus 147 ~~GvPQ~R~R~~~ia~~~ 164 (275)
T cd00315 147 DYGVPQNRERVFIIGIRK 164 (275)
T ss_pred HcCCCCCCcEEEEEEEeC
Confidence 245576666666666553
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00091 Score=53.68 Aligned_cols=94 Identities=19% Similarity=0.260 Sum_probs=50.2
Q ss_pred HHHHHHHhccC-CCCCCCeEEEEcCCCCHhHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhc-C--CCcceEEEcccc
Q psy8370 67 QFLSSLYCQKK-SDPGKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKD-C--DKLDKCYNVGIQ 140 (256)
Q Consensus 67 ~~l~~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~-~--~~i~~~~~~d~~ 140 (256)
.++..++.... ..+...++||||+|....--.|..+ ++ +.+|+|+++..++.|++++... . .+| .++...-.
T Consensus 87 ~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I-~l~~~~~~ 164 (299)
T PF05971_consen 87 HWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRI-ELRKQKNP 164 (299)
T ss_dssp HHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTE-EEEE--ST
T ss_pred HHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccce-EEEEcCCc
Confidence 55666662111 1223578999999988654444333 45 9999999999999999999876 3 455 55544221
Q ss_pred -cc---CCCCCCCceeEEEechhhhcc
Q psy8370 141 -DF---KPEDLNIKYDVIWIQWVLMFI 163 (256)
Q Consensus 141 -~~---~~~~~~~~~D~V~~~~~l~~~ 163 (256)
.. .... ...||+.+|+=-++.-
T Consensus 165 ~~i~~~i~~~-~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 165 DNIFDGIIQP-NERFDFTMCNPPFYSS 190 (299)
T ss_dssp -SSTTTSTT---S-EEEEEE-----SS
T ss_pred cccchhhhcc-cceeeEEecCCccccC
Confidence 11 1111 2379999998665544
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0069 Score=46.78 Aligned_cols=110 Identities=12% Similarity=0.099 Sum_probs=76.1
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHh----cC-CeEEEEeCCHHHHHHHHHHHHh-cC-CCcceEEEccccccC-CCCCCC
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAK----HF-DKIDLLEQSSKFIEQAKEEILK-DC-DKLDKCYNVGIQDFK-PEDLNI 149 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~----~~-~~v~~vD~s~~~~~~a~~~~~~-~~-~~i~~~~~~d~~~~~-~~~~~~ 149 (256)
....+.+.+|+|+|+..-+..|+.. +. .+++.+|+|...++...+.+.. .. ..+ .-+++|..... ..+..+
T Consensus 75 ~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v-~~l~~~~~~~La~~~~~~ 153 (321)
T COG4301 75 SITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEV-NALCGDYELALAELPRGG 153 (321)
T ss_pred HhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeE-eehhhhHHHHHhcccCCC
Confidence 4566899999999999877666543 33 2899999999887765544432 22 223 44566654321 111212
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+==.++...++..+++.+...++..++..|+||-.+++.
T Consensus 154 ~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 154 RRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred eEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 334455567899999989999999999999999999986
|
|
| >KOG2730|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00014 Score=54.75 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=59.9
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCC--CCceeEEEe
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDL--NIKYDVIWI 156 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~--~~~~D~V~~ 156 (256)
....|+|.-||.|..+...+..++ .|+++|+++.-+..|+.+.+-.| .++ .|+++|+.++..... ...+|+|..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rI-tFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRI-TFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCcee-EEEechHHHHHHHHhhhhheeeeeec
Confidence 567899999999999999988887 89999999999999999988665 578 999999987753211 114566665
Q ss_pred c
Q psy8370 157 Q 157 (256)
Q Consensus 157 ~ 157 (256)
+
T Consensus 172 s 172 (263)
T KOG2730|consen 172 S 172 (263)
T ss_pred C
Confidence 4
|
|
| >KOG2793|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0012 Score=51.49 Aligned_cols=105 Identities=13% Similarity=0.080 Sum_probs=64.9
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHH------HHHhcCCCcceEEEccccccCCCCC-CCc-ee
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE------EILKDCDKLDKCYNVGIQDFKPEDL-NIK-YD 152 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~i~~~~~~d~~~~~~~~~-~~~-~D 152 (256)
...+||++|+|+|..+..++.....+|...|........... .....+..+ .....++...+.... .+. +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v-~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSV-IVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCce-eEEEEecCCcccHhhccCCccc
Confidence 356799999999987777766555588888876543222211 111222234 444444443332111 124 89
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+|+++.++... .....++.-++..|..+|.+++.
T Consensus 165 lilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 165 LILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred EEEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEE
Confidence 99999988776 34456777788888888866665
|
|
| >KOG4589|consensus | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0041 Score=45.91 Aligned_cols=144 Identities=16% Similarity=0.014 Sum_probs=76.9
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhc-CC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC------CCCCc
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKH-FD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE------DLNIK 150 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~------~~~~~ 150 (256)
+.+..+|||+||-.|.++....++. +. .|.|||+-.- ...+| ...+...|+.+.... .....
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~~G--a~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPPEG--ATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCCCC--cccccccccCCHHHHHHHHHhCCCCc
Confidence 5778999999999999998876664 22 7999998532 11122 202223355443210 01136
Q ss_pred eeEEEechh--------hhccCH-HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcC
Q psy8370 151 YDVIWIQWV--------LMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 221 (256)
Q Consensus 151 ~D~V~~~~~--------l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 221 (256)
.|+|++... ..|... +-...++.-....++|+|.+++-...... ...+.+.+.+ -
T Consensus 137 VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e---------------~~~l~r~l~~-~ 200 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE---------------EALLQRRLQA-V 200 (232)
T ss_pred ccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc---------------hHHHHHHHHH-H
Confidence 899987633 222211 12223444456677899999985321111 2445555543 3
Q ss_pred CcEEEeeeecCCCCcceeeeEEEeccC
Q psy8370 222 LKCVKSEKVTGMPKSLFKIYMFALKPN 248 (256)
Q Consensus 222 f~~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (256)
|+.+........-.+.-..++.|++-+
T Consensus 201 f~~Vk~vKP~Asr~eS~E~y~v~~~~k 227 (232)
T KOG4589|consen 201 FTNVKKVKPDASRDESAETYLVCLNFK 227 (232)
T ss_pred hhhcEeeCCccccccccceeeeeeecc
Confidence 555544433333333444555555444
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.003 Score=52.69 Aligned_cols=147 Identities=13% Similarity=0.070 Sum_probs=84.3
Q ss_pred CCCeEEEEcCCCCHhHHHHHHh------------c--C-C-eEEEEeCCHHHHHHHHHHHHh--------------cCCC
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAK------------H--F-D-KIDLLEQSSKFIEQAKEEILK--------------DCDK 130 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~------------~--~-~-~v~~vD~s~~~~~~a~~~~~~--------------~~~~ 130 (256)
+..+|+|+|||+|.++..+... + . . +|+.-|....-....-..+.. .+.+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4678999999999877655321 1 1 1 566667654332222222211 0001
Q ss_pred -c-ceEEEccccccCCCCCCCceeEEEechhhhccCH--H----------------------------------HHHHHH
Q psy8370 131 -L-DKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD--E----------------------------------DIIKFL 172 (256)
Q Consensus 131 -i-~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~--~----------------------------------~~~~~l 172 (256)
+ ..-+.+++-.-.++.. +.+++++..++||++. + ++..+|
T Consensus 143 ~~f~~gvpGSFY~RLfP~~--Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL 220 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPAR--SIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFL 220 (386)
T ss_pred ceEEEecCccccccccCCC--ceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 0122344544445555 8999999999999853 1 234455
Q ss_pred HHHhhhcCCCcEEEEEecccCCCCccccC-------------------------------CCCceeeCHHHHHHHHHhcC
Q psy8370 173 NLCKQILNKNGIIIIKDNVASGVKNEYDD-------------------------------EDSSVVRSLPQFCLLFSKAN 221 (256)
Q Consensus 173 ~~~~~~LkpgG~l~i~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~l~~~g 221 (256)
+.=++-|.|||.++++...+......... .-..|..+.+|+.+.+++.|
T Consensus 221 ~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~g 300 (386)
T PLN02668 221 RARAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANG 300 (386)
T ss_pred HHHHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcC
Confidence 55677889999999985444321110000 01123358999999999877
Q ss_pred -CcEEEeee
Q psy8370 222 -LKCVKSEK 229 (256)
Q Consensus 222 -f~~~~~~~ 229 (256)
|.+...+.
T Consensus 301 sF~I~~le~ 309 (386)
T PLN02668 301 SFAIDKLEV 309 (386)
T ss_pred CEEeeeeEE
Confidence 66655553
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00043 Score=49.66 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=81.7
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccc-ccCCCCCCCceeEEEechhh
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ-DFKPEDLNIKYDVIWIQWVL 160 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~-~~~~~~~~~~~D~V~~~~~l 160 (256)
+++++-+|+..=..-...++.|+.++..||.++--++ .+ ++ +++..+...|+. ++.... ++||++.|..++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~--~~-~~---dr~ssi~p~df~~~~~~y~--~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQ--EE-FR---DRLSSILPVDFAKNWQKYA--GSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccC--cc-cc---cccccccHHHHHHHHHHhh--ccchhhheechh
Confidence 5678889999877777777888889999998762111 11 11 123233333432 222223 389999999888
Q ss_pred hccC---------HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 161 MFIL---------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 161 ~~~~---------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
+|.. +..-.+.+.++.++|||||.++++.+....... ++ . ...+.+..+.-++ .||+.+..-
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~-fN--a-hRiYg~~rL~mm~--~gfe~i~tf 144 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQ-FN--A-HRIYGPIRLAMMF--YGFEWIDTF 144 (177)
T ss_pred ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceE-Ee--c-ceeecHhHHHHHh--CCcEEEeee
Confidence 7652 122356888999999999999998665542211 11 1 1123444444444 789888653
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0064 Score=45.96 Aligned_cols=126 Identities=12% Similarity=0.211 Sum_probs=72.6
Q ss_pred chhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc---CCeEEEEeCCHHHHHHHHHHH-------------
Q psy8370 61 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH---FDKIDLLEQSSKFIEQAKEEI------------- 124 (256)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~------------- 124 (256)
-++-+.+++++.+ .......+.++.|-.||.|+++-.+.-.. ...|++-|+++.+++.|++++
T Consensus 32 PVRLAsEi~qR~l-~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~ 110 (246)
T PF11599_consen 32 PVRLASEIFQRAL-HYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARRE 110 (246)
T ss_dssp -HHHHHHHHHHHH-CTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHH-HhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHH
Confidence 3444557777776 45555678899999999999877654332 238999999999999998885
Q ss_pred ----------------------------HhcC--CCcceEEEccccccCCC---CCCCceeEEEechh----hhcc---C
Q psy8370 125 ----------------------------LKDC--DKLDKCYNVGIQDFKPE---DLNIKYDVIWIQWV----LMFI---L 164 (256)
Q Consensus 125 ----------------------------~~~~--~~i~~~~~~d~~~~~~~---~~~~~~D~V~~~~~----l~~~---~ 164 (256)
...+ ... .....|+.+.... +.....|+|+...- -+|- +
T Consensus 111 eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~-~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~ 189 (246)
T PF11599_consen 111 ELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPH-AIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGS 189 (246)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--E-EEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCch-hheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCC
Confidence 0111 122 4667777764321 11123699997632 1222 2
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 165 DEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 165 ~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
......+|..++++|.+++++.++
T Consensus 190 ~~p~~~ml~~l~~vLp~~sVV~v~ 213 (246)
T PF11599_consen 190 GGPVAQMLNSLAPVLPERSVVAVS 213 (246)
T ss_dssp HHHHHHHHHHHHCCS-TT-EEEEE
T ss_pred CCcHHHHHHHHHhhCCCCcEEEEe
Confidence 245678999999999555666664
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.012 Score=46.76 Aligned_cols=157 Identities=9% Similarity=0.088 Sum_probs=97.6
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCC-HHHHHHHHHHHHhc----CCCcceEEEccccc
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQS-SKFIEQAKEEILKD----CDKLDKCYNVGIQD 141 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~~~----~~~i~~~~~~d~~~ 141 (256)
+++.+.+.+... .....|+.+|||.-.-...+. ... .+..+|++ |+.++.-++.+... ..+. .++..|+.+
T Consensus 68 r~~D~~i~~~~~-~g~~qvV~LGaGlDTr~~Rl~-~~~-~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~-~~v~~Dl~~ 143 (260)
T TIGR00027 68 RFFDDFLLAAVA-AGIRQVVILGAGLDTRAYRLP-WPD-GTRVFEVDQPAVLAFKEKVLAELGAEPPAHR-RAVPVDLRQ 143 (260)
T ss_pred HHHHHHHHHHHh-cCCcEEEEeCCccccHHHhcC-CCC-CCeEEECCChHHHHHHHHHHHHcCCCCCCce-EEeccCchh
Confidence 455554422222 235679999999887777662 222 45666666 44555555555542 2345 677778751
Q ss_pred -cCC---CC--CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCC-----------cc--ccCC
Q psy8370 142 -FKP---ED--LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK-----------NE--YDDE 202 (256)
Q Consensus 142 -~~~---~~--~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-----------~~--~~~~ 202 (256)
+.. .. +....-++++-.++.+++.+...++++.+.+...||+.+++......... .. ....
T Consensus 144 ~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (260)
T TIGR00027 144 DWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGS 223 (260)
T ss_pred hHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhccccc
Confidence 110 00 01245588888999999999999999999999889988887532211100 00 1122
Q ss_pred CCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 203 DSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
...+..+..++...|..+||++...
T Consensus 224 ~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 224 GLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred ccccCCChhhHHHHHHHCCCeeecC
Confidence 2234467899999999999998764
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00042 Score=58.75 Aligned_cols=125 Identities=16% Similarity=0.208 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..-..|+|+.+|.|.++..|.....= +|+-+ ..+..+....++ | -+ ..++.=-+.++..+. .||+|.+.
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydR----G-LI-G~yhDWCE~fsTYPR--TYDLlHA~ 434 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDR----G-LI-GVYHDWCEAFSTYPR--TYDLLHAD 434 (506)
T ss_pred cceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhc----c-cc-hhccchhhccCCCCc--chhheehh
Confidence 33467999999999999998654421 22222 222223322222 1 12 333322233444444 89999999
Q ss_pred hhhhccCH-HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 158 WVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 158 ~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
.++..... -++..++-++-|+|+|+|.+++.+... ...++..++....++......
T Consensus 435 ~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~----------------vl~~v~~i~~~lrW~~~~~d~ 491 (506)
T PF03141_consen 435 GLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD----------------VLEKVKKIAKSLRWEVRIHDT 491 (506)
T ss_pred hhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH----------------HHHHHHHHHHhCcceEEEEec
Confidence 99887643 567889999999999999999953211 235667777777777665443
|
; GO: 0008168 methyltransferase activity |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=97.25 E-value=4.6e-05 Score=51.04 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=44.7
Q ss_pred ceeEEEechhhh--ccC--HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcccc------CCCCceeeCHHHHHHHHHh
Q psy8370 150 KYDVIWIQWVLM--FIL--DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD------DEDSSVVRSLPQFCLLFSK 219 (256)
Q Consensus 150 ~~D~V~~~~~l~--~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~ 219 (256)
.||+|+|..+-. |++ ++.+..+++.+++.|+|||.|++............. .........++++...+.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~ 80 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLE 80 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTS
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHh
Confidence 489999987643 443 367888999999999999999997543332211000 0011223466778887776
Q ss_pred --cCCcEEEee
Q psy8370 220 --ANLKCVKSE 228 (256)
Q Consensus 220 --~gf~~~~~~ 228 (256)
.||...+..
T Consensus 81 ~evGF~~~e~~ 91 (110)
T PF06859_consen 81 PEVGFSSVEEL 91 (110)
T ss_dssp TTT---EEEEE
T ss_pred cccceEEEEEc
Confidence 589877633
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG4058|consensus | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0082 Score=42.52 Aligned_cols=111 Identities=11% Similarity=0.076 Sum_probs=71.6
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKP 144 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~ 144 (256)
+.+..++ ......+..+.+|+|+|.|+.....++.+....+|+|+++-.+..++-..-.++ ... .|..-|+-....
T Consensus 59 eQv~nVL-Sll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~t-rf~RkdlwK~dl 136 (199)
T KOG4058|consen 59 EQVENVL-SLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKST-RFRRKDLWKVDL 136 (199)
T ss_pred HHHHHHH-HHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccch-hhhhhhhhhccc
Confidence 4455555 444567779999999999999999888785689999999988777765543333 233 566666554433
Q ss_pred CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
. .|..|+...+-.-+ ..+-.++..-|..|..++-.
T Consensus 137 ~----dy~~vviFgaes~m-----~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 137 R----DYRNVVIFGAESVM-----PDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred c----ccceEEEeehHHHH-----hhhHHHHHhhCcCCCeEEEE
Confidence 2 35555554443333 22344556667777777765
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0041 Score=50.83 Aligned_cols=53 Identities=21% Similarity=0.356 Sum_probs=41.8
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhc---------CCeEEEEeCCHHHHHHHHHHHHhc
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKH---------FDKIDLLEQSSKFIEQAKEEILKD 127 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---------~~~v~~vD~s~~~~~~a~~~~~~~ 127 (256)
+....+.+..++|||+|+|.++..+++.. ..++..||+|+...+.-++++...
T Consensus 71 q~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 71 QELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 34456677899999999999998887642 238999999999988888877654
|
|
| >KOG1596|consensus | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0046 Score=47.51 Aligned_cols=103 Identities=17% Similarity=0.075 Sum_probs=69.0
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHh-cCC-eEEEEeCCHHH----HHHHHHHHHhcCCCcceEEEccccccCCCC-CC
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKF----IEQAKEEILKDCDKLDKCYNVGIQDFKPED-LN 148 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~-~v~~vD~s~~~----~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~-~~ 148 (256)
..+++++.+||-+|+++|....++..- +.. -|++||.|... +..|+++ .++ -.+..|+....... -.
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-----tNi-iPIiEDArhP~KYRmlV 224 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-----TNI-IPIIEDARHPAKYRMLV 224 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-----CCc-eeeeccCCCchheeeee
Confidence 346789999999999999988887554 333 79999999654 4444433 456 56667776543210 01
Q ss_pred CceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 149 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+-.|+|++... ++++...+.-++.-.||+||.++++
T Consensus 225 gmVDvIFaDva----qpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 225 GMVDVIFADVA----QPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeEEEEeccCC----CchhhhhhhhhhhhhhccCCeEEEE
Confidence 25677776522 2244445666788899999999997
|
|
| >KOG3115|consensus | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0021 Score=48.02 Aligned_cols=48 Identities=29% Similarity=0.261 Sum_probs=40.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhc
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKD 127 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~ 127 (256)
.+...+.|||||.|.++..|+...++ -+.|.||-.+.-+..+++++..
T Consensus 59 ~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~AL 107 (249)
T KOG3115|consen 59 NKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQAL 107 (249)
T ss_pred cccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHH
Confidence 45678999999999999999777665 7999999999999999888643
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0068 Score=55.03 Aligned_cols=127 Identities=9% Similarity=-0.038 Sum_probs=77.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-------C-----C-eEEEEeCCH---HHHHHHH-----------HHHHhc-----
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-------F-----D-KIDLLEQSS---KFIEQAK-----------EEILKD----- 127 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-------~-----~-~v~~vD~s~---~~~~~a~-----------~~~~~~----- 127 (256)
.+.-+|+|+|-|+|.......+.- . . .++++|..+ +.+..+. +.....
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 445799999999998655544211 1 1 788899644 2222221 111110
Q ss_pred C----------CCcceEEEccccccCCCCCCCceeEEEechhhhccCHH-HHHHHHHHHhhhcCCCcEEEEEecccCCCC
Q psy8370 128 C----------DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDE-DIIKFLNLCKQILNKNGIIIIKDNVASGVK 196 (256)
Q Consensus 128 ~----------~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 196 (256)
+ ..+ .+..+|+.+....-. ..+|+++....--.-+++ --..+++.+++.++|||.+...
T Consensus 136 g~~~~~~~~~~~~l-~l~~gd~~~~~~~~~-~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~-------- 205 (662)
T PRK01747 136 GCHRLLFDDGRVTL-DLWFGDANELLPQLD-ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF-------- 205 (662)
T ss_pred CceEEEecCCcEEE-EEEecCHHHHHHhcc-ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe--------
Confidence 0 123 456677766544322 369999987432222222 1246999999999999999863
Q ss_pred ccccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 197 NEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
-....+++.|..+||++...
T Consensus 206 -----------t~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 206 -----------TSAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred -----------ehHHHHHHHHHHcCCeeeec
Confidence 13467889999999998644
|
|
| >KOG1562|consensus | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0041 Score=49.27 Aligned_cols=109 Identities=20% Similarity=0.179 Sum_probs=78.7
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc-----CCCcceEEEccccccCCCCCCCcee
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
...+++||-||.|.|...+..+.+. ..++..+|++...++..++.++.. +.++ .++.+|-..+......+.||
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v-~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKV-KLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCce-EEEeccHHHHHHHhccCCce
Confidence 4667899999999999999886652 348999999999999998887643 2466 77777766554322235899
Q ss_pred EEEechhhhccCHH--HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 153 VIWIQWVLMFILDE--DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 153 ~V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+|+....=--.|.. -...+.+-+.+.||++|++++.
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 99976432222211 1235778889999999999985
|
|
| >KOG0822|consensus | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0036 Score=53.41 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=72.9
Q ss_pred CCeEEEEcCCCCHhHHHHHHh---cCC--eEEEEeCCHHHHHHHHHH-HHhcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 82 KTRVLDVGAGIGRISKYLLAK---HFD--KIDLLEQSSKFIEQAKEE-ILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~---~~~--~v~~vD~s~~~~~~a~~~-~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...|+-+|+|-|-+....++. ... ++++||-+|.++-..+.+ ++.++.++ .++..|++.+.++.. +.|+++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~V-tii~~DMR~w~ap~e--q~DI~V 444 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRV-TIISSDMRKWNAPRE--QADIIV 444 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCee-EEEeccccccCCchh--hccchH
Confidence 467889999999877655432 112 799999999988776653 33444677 999999999986544 799999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
+-..-.+-..+--...|..+-+.|||+|+.|=
T Consensus 445 SELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 445 SELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred HHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 86332211112224688899999999987764
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0084 Score=47.84 Aligned_cols=88 Identities=16% Similarity=0.105 Sum_probs=67.5
Q ss_pred HHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC
Q psy8370 68 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~ 145 (256)
++.+.+ ....+.+++..+|.--|.|..+..++.... ..++|+|-++.+++.|++.+...+.++ .+++.++.++...
T Consensus 11 Ll~E~i-~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~-~~v~~~F~~l~~~ 88 (314)
T COG0275 11 LLNEVV-ELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRV-TLVHGNFANLAEA 88 (314)
T ss_pred HHHHHH-HhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcE-EEEeCcHHHHHHH
Confidence 455555 555678889999999999999999998875 379999999999999999998766678 8888877665321
Q ss_pred ---CCCCceeEEEec
Q psy8370 146 ---DLNIKYDVIWIQ 157 (256)
Q Consensus 146 ---~~~~~~D~V~~~ 157 (256)
.+.+.+|-|+..
T Consensus 89 l~~~~i~~vDGiL~D 103 (314)
T COG0275 89 LKELGIGKVDGILLD 103 (314)
T ss_pred HHhcCCCceeEEEEe
Confidence 112356766644
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.15 Score=44.60 Aligned_cols=121 Identities=13% Similarity=0.026 Sum_probs=78.0
Q ss_pred hhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc---C--CeEEEEeCCHHHHHHHHHHHHhcCCC--cceEE
Q psy8370 63 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH---F--DKIDLLEQSSKFIEQAKEEILKDCDK--LDKCY 135 (256)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~--~~v~~vD~s~~~~~~a~~~~~~~~~~--i~~~~ 135 (256)
+...+++.+++ .+.+..+|.|..||+|.+........ . ..++|.|+++.....|+-++--++.. + ...
T Consensus 172 ~~v~~liv~~l----~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~-~i~ 246 (489)
T COG0286 172 REVSELIVELL----DPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDA-NIR 246 (489)
T ss_pred HHHHHHHHHHc----CCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccc-ccc
Confidence 34456666666 33566799999999998776654432 1 36999999999999999988766532 2 444
Q ss_pred EccccccCCC---CCCCceeEEEechhh--------------------hc-c-CH-HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 136 NVGIQDFKPE---DLNIKYDVIWIQWVL--------------------MF-I-LD-EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 136 ~~d~~~~~~~---~~~~~~D~V~~~~~l--------------------~~-~-~~-~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.+|...-+.. ...+.||+|+++--+ .. . +. .....+++.+...|+|||...++
T Consensus 247 ~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 247 HGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred ccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 4443333222 122479998876111 11 1 11 12267999999999998866654
|
|
| >KOG2920|consensus | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0018 Score=51.02 Aligned_cols=108 Identities=17% Similarity=0.213 Sum_probs=66.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHH-------HHHHH---hcCCCcceEEEccccccCCCCC-
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQA-------KEEIL---KDCDKLDKCYNVGIQDFKPEDL- 147 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a-------~~~~~---~~~~~i~~~~~~d~~~~~~~~~- 147 (256)
...+++|||+|||+|.....+...+...+...|++...++.. ..... .....+.......+.++.....
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 356899999999999999998777866888899988776211 00111 1101111223331112222111
Q ss_pred CCceeEEEechhhhccCHHHHHHH-HHHHhhhcCCCcEEEEE
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKF-LNLCKQILNKNGIIIIK 188 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~-l~~~~~~LkpgG~l~i~ 188 (256)
.-.||+|.++-.+...+. .... .......++++|.+++.
T Consensus 194 ~~~ydlIlsSetiy~~~~--~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSIDS--LAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccchhhhhhhhhhhCcch--hhhhHhhhhhhcCCccchhhhh
Confidence 016999999988877743 2233 55667777889988875
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0028 Score=48.02 Aligned_cols=140 Identities=7% Similarity=-0.011 Sum_probs=65.7
Q ss_pred CCCeEEEEcCCCCHhHHHHHHh-----cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC------CCCCC
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAK-----HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP------EDLNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~------~~~~~ 149 (256)
++..|+|+|.-.|..+.+++.. +..+|+|+|++-...............++ +++.+|..+... ....+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI-~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRI-TFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTE-EEEES-SSSTHHHHTSGSS----
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCce-EEEECCCCCHHHHHHHHHhhccC
Confidence 5789999999999888776542 22399999996433222111111112477 899998765421 11112
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCcee---eCHHHHHHHHHhcC-CcEE
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVV---RSLPQFCLLFSKAN-LKCV 225 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g-f~~~ 225 (256)
...+|+.... |.. +...+.|+.....+++|+++++.+......... ......|. -....+.+.++++. |++.
T Consensus 111 ~~vlVilDs~-H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~-~~~~~~w~~g~~p~~av~~fL~~~~~f~iD 186 (206)
T PF04989_consen 111 HPVLVILDSS-HTH--EHVLAELEAYAPLVSPGSYLIVEDTIIEDWPES-WFPDRPWGPGNNPKTAVKEFLAEHPDFEID 186 (206)
T ss_dssp SSEEEEESS-------SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS--------------HHHHHHHHHTTTTEEEE
T ss_pred CceEEEECCC-ccH--HHHHHHHHHhCccCCCCCEEEEEeccccccccc-cccccchhhhhHHHHHHHHHHHHCCCcEec
Confidence 3445554322 211 223567888999999999999975432221110 00111121 13566777777765 5554
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0032 Score=42.04 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=34.3
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQS 113 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s 113 (256)
.++-.+........+...-+|||||+|.+...|...|+ .=.|+|.-
T Consensus 44 AyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 44 AYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred HHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 45555553333445677899999999999999988888 56777764
|
; GO: 0008168 methyltransferase activity |
| >KOG1122|consensus | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.093 Score=43.93 Aligned_cols=110 Identities=12% Similarity=0.095 Sum_probs=75.9
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
.++++.+|||+.+-.|.=+.++++. .-..|++.|.+..-+.....++...+.+-+.....|..+++...-.++||=|+
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVL 317 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVL 317 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccceee
Confidence 5788999999999999766666543 22389999999999999999998877333255666766554222223688887
Q ss_pred echhhh---------------------ccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 156 IQWVLM---------------------FILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 156 ~~~~l~---------------------~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
...-.. ..+ .-..++|..+...+++||+|+-+
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~-~LQr~LllsAi~lv~~GGvLVYS 370 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYA-HLQRELLLSAIDLVKAGGVLVYS 370 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhH-HHHHHHHHHHHhhccCCcEEEEE
Confidence 431110 010 11346888889999999999986
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0085 Score=46.39 Aligned_cols=77 Identities=21% Similarity=0.282 Sum_probs=46.5
Q ss_pred CeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH---hcC-------CCcceEEEccccccCCCCCCCcee
Q psy8370 83 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEIL---KDC-------DKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 83 ~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~-------~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
.+|||.-+|-|.-+..++..|+ +|+++|-|+-+....+.-+. ... .++ +++.+|..++.... ..+||
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri-~l~~~d~~~~L~~~-~~s~D 153 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRI-QLIHGDALEYLRQP-DNSFD 153 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHE-EEEES-CCCHCCCH-SS--S
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCC-EEEcCCHHHHHhhc-CCCCC
Confidence 4999999999999999988887 89999999987655554332 111 256 88999988876532 24899
Q ss_pred EEEechhhhc
Q psy8370 153 VIWIQWVLMF 162 (256)
Q Consensus 153 ~V~~~~~l~~ 162 (256)
+|+..=++.+
T Consensus 154 VVY~DPMFp~ 163 (234)
T PF04445_consen 154 VVYFDPMFPE 163 (234)
T ss_dssp EEEE--S---
T ss_pred EEEECCCCCC
Confidence 9999866654
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0097 Score=49.90 Aligned_cols=101 Identities=21% Similarity=0.255 Sum_probs=71.5
Q ss_pred CCCeEEEEcCCCCHhHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhcC--C-CcceEEEccccccCCCCCCCceeEEE
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDC--D-KLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~--~-~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
.+.+|||.=+|+|.-+..++.. +..+|+.-|+|+.+++..+++...++ . .+ .+...|+..+.... ...||+|=
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~-~v~~~DAn~ll~~~-~~~fD~ID 126 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERI-EVSNMDANVLLYSR-QERFDVID 126 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCE-EEEES-HHHHHCHS-TT-EEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceE-EEehhhHHHHhhhc-cccCCEEE
Confidence 4579999999999887777665 44599999999999999999987665 2 34 67788887765311 13799997
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
..-. .....++..+.+.++.||.+.++.
T Consensus 127 lDPf------GSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 127 LDPF------GSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp E--S------S--HHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCC------CCccHhHHHHHHHhhcCCEEEEec
Confidence 6422 233468888999999999999973
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.016 Score=47.55 Aligned_cols=97 Identities=16% Similarity=0.105 Sum_probs=66.7
Q ss_pred CCCCCCCeEEEEcCC-CCHhHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcc-ccccCCCCCCCceeE
Q psy8370 77 KSDPGKTRVLDVGAG-IGRISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG-IQDFKPEDLNIKYDV 153 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G-~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d-~~~~~~~~~~~~~D~ 153 (256)
.+..++.+|+-+|+| .|..+..++. .+ .+|+++|.+++-.+.|++.-.. .++... ......... .+|+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd------~~i~~~~~~~~~~~~~--~~d~ 232 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD------HVINSSDSDALEAVKE--IADA 232 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc------EEEEcCCchhhHHhHh--hCcE
Confidence 356788999988887 4567777777 45 5999999999988888876322 333322 111111122 4899
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
|+.... ...+....+.|+++|.+++.-..
T Consensus 233 ii~tv~---------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 233 IIDTVG---------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEECCC---------hhhHHHHHHHHhcCCEEEEECCC
Confidence 988754 23566678899999999998555
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.018 Score=47.63 Aligned_cols=148 Identities=15% Similarity=0.088 Sum_probs=94.3
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCC-ceeEEEechhh
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI-KYDVIWIQWVL 160 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~-~~D~V~~~~~l 160 (256)
..+++|+-||.|.+..-+...|+.-+.++|+++.+++.-+.++.. - .+...|+.+.....-.. .+|+++...-+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~----~-~~~~~di~~~~~~~~~~~~~DvligGpPC 77 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH----G-DIILGDIKELDGEALRKSDVDVLIGGPPC 77 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC----C-ceeechHhhcChhhccccCCCEEEeCCCC
Confidence 468999999999999999888987888999999988888777653 1 56677777665433212 58999866332
Q ss_pred hccCH-----------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEe--
Q psy8370 161 MFILD-----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS-- 227 (256)
Q Consensus 161 ~~~~~-----------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~-- 227 (256)
+.++. ..+..-+.++...++| .+++.++....... ...+.+.+.+.|++.||.+...
T Consensus 78 Q~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~--------~~~~~~~i~~~L~~~GY~~~~~il 147 (328)
T COG0270 78 QDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSS--------KGQTFDEIKKELEELGYGVEFNIL 147 (328)
T ss_pred cchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhc--------CchHHHHHHHHHHHcCCcchHhee
Confidence 22211 1122334455566677 55555554443221 2246789999999999973321
Q ss_pred -eeecCCCCcceeeeEEE
Q psy8370 228 -EKVTGMPKSLFKIYMFA 244 (256)
Q Consensus 228 -~~~~~~~~~~~~~~~~~ 244 (256)
...++.|..--.+++..
T Consensus 148 na~dyGvPQ~ReRvfiig 165 (328)
T COG0270 148 NAADYGVPQSRERVFIVG 165 (328)
T ss_pred eHHhcCCCCCccEEEEEE
Confidence 22355565555555553
|
|
| >KOG1227|consensus | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0023 Score=50.75 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=68.7
Q ss_pred CCCeEEEEcCCCCHhHH-HHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 81 GKTRVLDVGAGIGRISK-YLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~-~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.+..|+|+-+|-|+++. .+...|++.|+++|++|..++..+...+..+ .+. ....+|-+...+. ...|-|...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~-~i~~gd~R~~~~~---~~AdrVnLG 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRC-RITEGDNRNPKPR---LRADRVNLG 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHH-HhhhccccccCcc---ccchheeec
Confidence 35889999999999999 7778899999999999999999998887654 223 3445555444332 246666654
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCC-Cc-EEEEEecccCCC
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNK-NG-IIIIKDNVASGV 195 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lkp-gG-~l~i~~~~~~~~ 195 (256)
. +|.. ++-.-.+.++|+| || ++-+.++.....
T Consensus 270 L----lPSs--e~~W~~A~k~Lk~eggsilHIHenV~~s~ 303 (351)
T KOG1227|consen 270 L----LPSS--EQGWPTAIKALKPEGGSILHIHENVKDSD 303 (351)
T ss_pred c----cccc--ccchHHHHHHhhhcCCcEEEEeccccccc
Confidence 2 2221 1233345567777 44 555555544443
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.048 Score=44.78 Aligned_cols=146 Identities=15% Similarity=0.145 Sum_probs=88.6
Q ss_pred EEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhhccC
Q psy8370 85 VLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFIL 164 (256)
Q Consensus 85 vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~ 164 (256)
|+|+-||.|.+..-+...|+.-+.++|+++.+.+.-+.++.. .....|+.+.....- +.+|+++...-+..++
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~------~~~~~Di~~~~~~~~-~~~dvl~gg~PCq~fS 73 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN------KVPFGDITKISPSDI-PDFDILLGGFPCQPFS 73 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC------CCCccChhhhhhhhC-CCcCEEEecCCCcccc
Confidence 689999999999999888886677899999988887777532 234567776654322 2589998652221111
Q ss_pred --------HHHHHHHHHHH---hhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee---e
Q psy8370 165 --------DEDIIKFLNLC---KQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK---V 230 (256)
Q Consensus 165 --------~~~~~~~l~~~---~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~---~ 230 (256)
.+....++.+. .+.++|. +++.++....... .. ......+...|+..||.+..... .
T Consensus 74 ~ag~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~----~~---~~~~~~i~~~l~~~GY~v~~~~l~a~d 144 (315)
T TIGR00675 74 IAGKRKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSH----DK---GRTFKVIIETLEELGYKVYYKVLNAKD 144 (315)
T ss_pred hhcccCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhc----cc---chHHHHHHHHHHhCCCEEEEEEEcHHH
Confidence 01222333333 3444674 5555544432211 00 12346778889999998754332 3
Q ss_pred cCCCCcceeeeEEEec
Q psy8370 231 TGMPKSLFKIYMFALK 246 (256)
Q Consensus 231 ~~~~~~~~~~~~~~l~ 246 (256)
.+.|..--.+++.+.+
T Consensus 145 yGvPQ~R~R~f~ia~r 160 (315)
T TIGR00675 145 FGVPQNRERIYIVGFR 160 (315)
T ss_pred CCCCCCccEEEEEEEe
Confidence 5557666666666655
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0098 Score=47.18 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=48.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc---------CCeEEEEeCCHHHHHHHHHHHHhc-------CCCcceEEEccccccC
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH---------FDKIDLLEQSSKFIEQAKEEILKD-------CDKLDKCYNVGIQDFK 143 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~---------~~~v~~vD~s~~~~~~a~~~~~~~-------~~~i~~~~~~d~~~~~ 143 (256)
..+.+|+|+|+|+|.++..++... ..+++.||+|+.+.+.-++++... ..++ .+ ..++.+.+
T Consensus 17 ~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i-~w-~~~l~~~p 94 (252)
T PF02636_consen 17 SEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPI-RW-LDDLEEVP 94 (252)
T ss_dssp SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCE-EE-ESSGGCS-
T ss_pred CcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCcc-ch-hhhhhccc
Confidence 345899999999999999887632 127999999999988888887542 1122 22 22333322
Q ss_pred CCCCCCceeEEEechhhhccC
Q psy8370 144 PEDLNIKYDVIWIQWVLMFIL 164 (256)
Q Consensus 144 ~~~~~~~~D~V~~~~~l~~~~ 164 (256)
..-+|+++.++..+|
T Consensus 95 ------~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 ------FPGFIIANELFDALP 109 (252)
T ss_dssp ------CCEEEEEESSGGGS-
T ss_pred ------CCEEEEEeeehhcCc
Confidence 246677777777664
|
; PDB: 4F3N_A 1ZKD_B. |
| >KOG2651|consensus | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.009 Score=49.04 Aligned_cols=57 Identities=30% Similarity=0.398 Sum_probs=42.7
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEE 123 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~ 123 (256)
+.+.+++.......+-..|+|+|+|.|.++..+.-...-.|.++|-|....+.|+..
T Consensus 139 ~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 139 RRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred HHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 334444434445677789999999999999998544434999999998887777654
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.02 Score=46.22 Aligned_cols=58 Identities=21% Similarity=0.080 Sum_probs=46.4
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK 126 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~ 126 (256)
..++.+++ +. ...++..|||.=||+|..+....+.+- +.+|+|++++..+.|++++..
T Consensus 195 ~~L~erlI-~~-~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRII-LA-SSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHH-HH-hCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 35566665 22 247789999999999999998755554 899999999999999999864
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.052 Score=44.66 Aligned_cols=150 Identities=15% Similarity=0.129 Sum_probs=89.6
Q ss_pred eEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhhcc
Q psy8370 84 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFI 163 (256)
Q Consensus 84 ~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~ 163 (256)
+++|+-||-|.+...+...|+..+.++|+++.+.+.-+.++. .....|+.+.....-.+.+|+++...-+..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~f 74 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPKDVDLLIGGPPCQGF 74 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHHT-SEEEEE---TTT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccccceEEEeccCCceE
Confidence 689999999999999988898789999999998888887764 4566777766532110038999866322211
Q ss_pred ---------CH--HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee---
Q psy8370 164 ---------LD--EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK--- 229 (256)
Q Consensus 164 ---------~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~--- 229 (256)
.+ ..+-.-+-++.+.++|. +++.++....... ........+...|++.||.+.....
T Consensus 75 S~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk--~~~~ENV~~l~~~-------~~~~~~~~i~~~l~~lGY~v~~~vlna~ 145 (335)
T PF00145_consen 75 SIAGKRKGFDDPRNSLFFEFLRIVKELKPK--YFLLENVPGLLSS-------KNGEVFKEILEELEELGYNVQWRVLNAA 145 (335)
T ss_dssp STTSTHHCCCCHTTSHHHHHHHHHHHHS-S--EEEEEEEGGGGTG-------GGHHHHHHHHHHHHHTTEEEEEEEEEGG
T ss_pred eccccccccccccchhhHHHHHHHhhccce--EEEecccceeecc-------ccccccccccccccccceeehhccccHh
Confidence 11 11222223334456784 3444444433211 0002357788889999998764443
Q ss_pred ecCCCCcceeeeEEEeccCC
Q psy8370 230 VTGMPKSLFKIYMFALKPNK 249 (256)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~ 249 (256)
.++.|..--.+++.+.+...
T Consensus 146 ~yGvPQ~R~R~fivg~r~~~ 165 (335)
T PF00145_consen 146 DYGVPQNRERVFIVGIRKDL 165 (335)
T ss_dssp GGTSSBE-EEEEEEEEEGGG
T ss_pred hCCCCCceeeEEEEEECCCC
Confidence 35567776677777766543
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >KOG2539|consensus | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.035 Score=46.99 Aligned_cols=115 Identities=13% Similarity=0.124 Sum_probs=73.1
Q ss_pred CCCCCCeEEEEcCCCCHhHHHH--HHhc-CCeEEEEeCCHHHHHHHHHHHHh--cCCCcceEEE-ccccccCCCCCCCce
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYL--LAKH-FDKIDLLEQSSKFIEQAKEEILK--DCDKLDKCYN-VGIQDFKPEDLNIKY 151 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l--~~~~-~~~v~~vD~s~~~~~~a~~~~~~--~~~~i~~~~~-~d~~~~~~~~~~~~~ 151 (256)
....+..++|+|.|.|.-...+ +-++ ...++.||.|..|........++ +...+ .... .-.....+......|
T Consensus 197 p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~-~v~~~~~~r~~~pi~~~~~y 275 (491)
T KOG2539|consen 197 PKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEP-IVRKLVFHRQRLPIDIKNGY 275 (491)
T ss_pred cccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCch-hccccchhcccCCCCcccce
Confidence 4455788999999877544333 2233 34899999999999999888876 21112 1222 222333343333469
Q ss_pred eEEEechhhhccCH-HHHHHHHHH-HhhhcCCCcEEEEEecccC
Q psy8370 152 DVIWIQWVLMFILD-EDIIKFLNL-CKQILNKNGIIIIKDNVAS 193 (256)
Q Consensus 152 D~V~~~~~l~~~~~-~~~~~~l~~-~~~~LkpgG~l~i~~~~~~ 193 (256)
|+|++.+.++++.. .......+. +++..++|+.+++.+....
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 99999999998855 333344444 4556688999998764443
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0084 Score=48.51 Aligned_cols=79 Identities=22% Similarity=0.146 Sum_probs=53.6
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC---CC-CCCcee
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP---ED-LNIKYD 152 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~---~~-~~~~~D 152 (256)
...++...+|---|.|..+..+++... .+++|+|-++.+++.+++++.....++ .++..++.++.. .. ....+|
T Consensus 17 ~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~-~~~~~~F~~l~~~l~~~~~~~~~d 95 (310)
T PF01795_consen 17 NPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRF-IFIHGNFSNLDEYLKELNGINKVD 95 (310)
T ss_dssp T--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTE-EEEES-GGGHHHHHHHTTTTS-EE
T ss_pred CcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceE-EEEeccHHHHHHHHHHccCCCccC
Confidence 467788999999999999999987643 499999999999999998877655677 788887766532 11 113577
Q ss_pred EEEec
Q psy8370 153 VIWIQ 157 (256)
Q Consensus 153 ~V~~~ 157 (256)
.|+..
T Consensus 96 giL~D 100 (310)
T PF01795_consen 96 GILFD 100 (310)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 77644
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.023 Score=44.03 Aligned_cols=53 Identities=23% Similarity=0.155 Sum_probs=38.6
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHH
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE 122 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~ 122 (256)
+++.+++ +. ...++..|||.=||+|..+..+.+.+- +.+|+|+++...+.|++
T Consensus 179 ~l~~~lI-~~-~t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLI-KA-STNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHH-HH-HS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHH-Hh-hhccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 4555555 22 136789999999999999999866665 89999999999998864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.047 Score=42.55 Aligned_cols=58 Identities=17% Similarity=0.097 Sum_probs=45.4
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD 127 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 127 (256)
.++..++ +. ...++..|||.-||+|..+....+.+- +.+|+|+++...+.+.+++...
T Consensus 151 ~l~~~~i-~~-~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLI-ES-FTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHH-HH-hCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 4555555 21 235788999999999999998766555 8999999999999999988653
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.046 Score=44.94 Aligned_cols=100 Identities=21% Similarity=0.194 Sum_probs=74.2
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhc-CCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~-~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
..+|+|-=+|+|.=++..+..... +++.-|+||.+.+..+++++.+ +.+. ..+..|...+..... ..||+|=..=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~-~v~n~DAN~lm~~~~-~~fd~IDiDPF 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDA-EVINKDANALLHELH-RAFDVIDIDPF 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccc-eeecchHHHHHHhcC-CCccEEecCCC
Confidence 789999999999988877665443 8999999999999999999876 3444 555677766654422 36888755321
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
....-++..+.+.++.||.+.++-
T Consensus 131 ------GSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 131 ------GSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred ------CCCchHHHHHHHHhhcCCEEEEEe
Confidence 122347777888888899999973
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.26 Score=36.38 Aligned_cols=136 Identities=16% Similarity=0.099 Sum_probs=76.9
Q ss_pred EcCCCCHhHHHHHHhc--CCeEEEEeCC--HHHHHHHH---HHHHhcC-CCcceEEEccccccCCCC--CCCceeEEEec
Q psy8370 88 VGAGIGRISKYLLAKH--FDKIDLLEQS--SKFIEQAK---EEILKDC-DKLDKCYNVGIQDFKPED--LNIKYDVIWIQ 157 (256)
Q Consensus 88 iG~G~G~~~~~l~~~~--~~~v~~vD~s--~~~~~~a~---~~~~~~~-~~i~~~~~~d~~~~~~~~--~~~~~D~V~~~ 157 (256)
+|=|.=.++..|+... ..+++++-++ ++..+.-. .++.... ..+.-.+..|+..+.... ..+.||.|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 4555555666666553 2366665444 33333221 2222211 223235677887776544 23589999987
Q ss_pred hhhhc-----------cCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 158 WVLMF-----------ILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 158 ~~l~~-----------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
+--.. .+..-+..+++.+.++|+++|.+.++-..... ...| ++..+.+++||.+.+
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p--------y~~W-----~i~~lA~~~gl~l~~ 149 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP--------YDSW-----NIEELAAEAGLVLVR 149 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC--------Cccc-----cHHHHHHhcCCEEEE
Confidence 42211 11234677999999999999999997322111 0112 355778889999876
Q ss_pred eeeecCCCCccee
Q psy8370 227 SEKVTGMPKSLFK 239 (256)
Q Consensus 227 ~~~~~~~~~~~~~ 239 (256)
.. .+....||
T Consensus 150 ~~---~F~~~~yp 159 (166)
T PF10354_consen 150 KV---PFDPSDYP 159 (166)
T ss_pred Ee---cCCHHHCC
Confidence 54 34444444
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.18 Score=44.12 Aligned_cols=100 Identities=13% Similarity=0.130 Sum_probs=62.9
Q ss_pred CCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccc-----------cCCC
Q psy8370 79 DPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD-----------FKPE 145 (256)
Q Consensus 79 ~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~-----------~~~~ 145 (256)
..++.+|+-+|||. |..+...+.. |+ +|+++|.++.-++.+++. + . .+...+..+ ....
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl----G--A-~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM----G--A-EFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----C--C-eEEEeccccccccccchhhhcchh
Confidence 45789999999995 5555555554 55 899999999988877763 1 1 222111111 0000
Q ss_pred ----------CCCCceeEEEechhhhccCHHHHHHH-HHHHhhhcCCCcEEEEEe
Q psy8370 146 ----------DLNIKYDVIWIQWVLMFILDEDIIKF-LNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 146 ----------~~~~~~D~V~~~~~l~~~~~~~~~~~-l~~~~~~LkpgG~l~i~~ 189 (256)
+..+.+|+|+.......-+. ..+ .+++.+.+||||.++..-
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~a---P~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKPA---PKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcccC---cchHHHHHHHhcCCCCEEEEEc
Confidence 00025899998765432211 134 588999999999988763
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=1 Score=39.06 Aligned_cols=154 Identities=15% Similarity=0.083 Sum_probs=87.2
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC---------------C
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE---------------D 146 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~---------------~ 146 (256)
.-+++|+-||.|.+..-+-..|+..|.++|+++.+.+.-+.++.... .. .....|+.+.... .
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p-~~-~~~~~DI~~i~~~~~~~~~~~~~~~~~~~ 165 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDP-AT-HRFNEDIRDITLSHKEGVSDEEAAEHIRQ 165 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCC-cc-ceeccChhhCccccccccchhhhhhhhhc
Confidence 56999999999999999877788778889999998887777653111 12 3345565554321 0
Q ss_pred CCCceeEEEechhhhccCH-----------------HHHHHHHHHH---hhhcCCCcEEEEEecccCCCCccccCCCCce
Q psy8370 147 LNIKYDVIWIQWVLMFILD-----------------EDIIKFLNLC---KQILNKNGIIIIKDNVASGVKNEYDDEDSSV 206 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~-----------------~~~~~~l~~~---~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 206 (256)
..+.+|+++...-+..++. +....++.++ .+..+|. +++.++...... +..
T Consensus 166 ~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk--~fvlENV~gl~s-------~~~ 236 (467)
T PRK10458 166 HIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPA--IFVLENVKNLKS-------HDK 236 (467)
T ss_pred cCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCC--EEEEeCcHhhhc-------ccc
Confidence 1125788885522221110 1111233333 3344664 444444443321 111
Q ss_pred eeCHHHHHHHHHhcCCcEEEe------------eeecCCCCcceeeeEEEecc
Q psy8370 207 VRSLPQFCLLFSKANLKCVKS------------EKVTGMPKSLFKIYMFALKP 247 (256)
Q Consensus 207 ~~~~~~~~~~l~~~gf~~~~~------------~~~~~~~~~~~~~~~~~l~~ 247 (256)
..+...+.+.|++.||.+... .... .|..--.+++.+.+.
T Consensus 237 g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlna~~f-VPQ~R~RvfiVg~r~ 288 (467)
T PRK10458 237 GKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHF-LPQHRERIVLVGFRR 288 (467)
T ss_pred cHHHHHHHHHHHHcCCeEEeccccCcccceEeehhhC-CCccCcEEEEEEEeC
Confidence 234567888899999998521 1122 565555666666553
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.1 Score=42.09 Aligned_cols=113 Identities=19% Similarity=0.193 Sum_probs=73.8
Q ss_pred CCeEEEEcCCCCHhHHHHHHhc-------C--------------CeEEEEeCCH--HHHHHHHHHHHhc-----------
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKH-------F--------------DKIDLLEQSS--KFIEQAKEEILKD----------- 127 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~-------~--------------~~v~~vD~s~--~~~~~a~~~~~~~----------- 127 (256)
..+||-||.|.|.=...++... . -.++.||+.+ ..++.....+...
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4799999999986444333221 0 1688999873 4555555444322
Q ss_pred -------CCCcceEEEccccccCCCC-----CCCceeEEEechhhhcc---CHHHHHHHHHHHhhhcCCCcEEEEEeccc
Q psy8370 128 -------CDKLDKCYNVGIQDFKPED-----LNIKYDVIWIQWVLMFI---LDEDIIKFLNLCKQILNKNGIIIIKDNVA 192 (256)
Q Consensus 128 -------~~~i~~~~~~d~~~~~~~~-----~~~~~D~V~~~~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 192 (256)
..++ .|.+.|+......+ ..+..++|...+.+..+ ......++|..+-..++||..|+|++...
T Consensus 167 ~~~~~~~~~~~-~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 167 WPLIEPDRFNV-SFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred cccCCccceee-eEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 1234 77888877665422 11146888877776544 22566789999999999999999998655
Q ss_pred CCC
Q psy8370 193 SGV 195 (256)
Q Consensus 193 ~~~ 195 (256)
...
T Consensus 246 SYS 248 (315)
T PF11312_consen 246 SYS 248 (315)
T ss_pred Cch
Confidence 543
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.059 Score=45.26 Aligned_cols=61 Identities=7% Similarity=0.036 Sum_probs=52.2
Q ss_pred CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 129 DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 129 ~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
+++ .++.+++.+.......+++|.++..+.+.+++++...+.++++.+.++|||.++.-..
T Consensus 275 drv-~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa 335 (380)
T PF11899_consen 275 DRV-RIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSA 335 (380)
T ss_pred CeE-EEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeC
Confidence 567 8899999887653323589999999999999999999999999999999999999643
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.4 Score=38.98 Aligned_cols=143 Identities=10% Similarity=0.095 Sum_probs=92.4
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCC-HHHHHHHHHHHHhcC----CCcceEEEccccccCCCC-----C--CC
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQS-SKFIEQAKEEILKDC----DKLDKCYNVGIQDFKPED-----L--NI 149 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~~~~----~~i~~~~~~d~~~~~~~~-----~--~~ 149 (256)
-..|+-+|||--.-+..+ ..+. .+...|++ |+.++.-++.+...+ .+. .++..|+.+..... + ..
T Consensus 93 ~~qvViLgaGLDTRayRl-~~~~-~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~-~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLDTRAYRL-DWPK-GTRVFEVDLPEVIEFKKKLLAERGATPPAHR-RLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEeccccccceeec-CCCC-CCeEEECCCcHHHHHHHHHhhhcCCCCCceE-EEEeccccccchHHHHHhcCCCcC
Confidence 688999999976665554 2222 45555555 566666666666544 245 78888887332111 0 12
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCC----CC-c--cccC-------CCCcee-eCHHHHH
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG----VK-N--EYDD-------EDSSVV-RSLPQFC 214 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~----~~-~--~~~~-------~~~~~~-~~~~~~~ 214 (256)
..=++++-.++.+++++...+++..+...+.||..++........ .. . .... ....+. ....++.
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~ 249 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIE 249 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHH
Confidence 445888899999999999999999999999998888876431110 00 0 0000 011122 3589999
Q ss_pred HHHHhcCCcEEEe
Q psy8370 215 LLFSKANLKCVKS 227 (256)
Q Consensus 215 ~~l~~~gf~~~~~ 227 (256)
..+.+.||.....
T Consensus 250 ~~l~~~g~~~~~~ 262 (297)
T COG3315 250 TWLAERGWRSTLN 262 (297)
T ss_pred HHHHhcCEEEEec
Confidence 9999999988765
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.28 Score=38.91 Aligned_cols=131 Identities=16% Similarity=0.150 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
-.++.|+-+| -.-..+..++--+ +++|..||+++..++...+.....+.+ + ..+..|+.+..|++-...||+.+..
T Consensus 151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~i-e~~~~Dlr~plpe~~~~kFDvfiTD 228 (354)
T COG1568 151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNI-EAFVFDLRNPLPEDLKRKFDVFITD 228 (354)
T ss_pred cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccch-hheeehhcccChHHHHhhCCeeecC
Confidence 3467899998 4445555544334 559999999999999998888877744 6 8889999888775544589998875
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCC---cEEEEEecccCCCCccccCCCCceeeCHHHHHH-HHHhcCCcEEEee
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKN---GIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL-LFSKANLKCVKSE 228 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lkpg---G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~gf~~~~~~ 228 (256)
-. +.+ +.+..++-+-...||.- |++.++-...+ .....++++ ++.+.||.+.+..
T Consensus 229 Pp-eTi--~alk~FlgRGI~tLkg~~~aGyfgiT~ress-------------idkW~eiQr~lIn~~gvVITdii 287 (354)
T COG1568 229 PP-ETI--KALKLFLGRGIATLKGEGCAGYFGITRRESS-------------IDKWREIQRILINEMGVVITDII 287 (354)
T ss_pred ch-hhH--HHHHHHHhccHHHhcCCCccceEeeeecccc-------------HHHHHHHHHHHHHhcCeeeHhhh
Confidence 21 111 23345555556667655 77777521110 111245555 6667787766544
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.021 Score=39.82 Aligned_cols=76 Identities=9% Similarity=0.044 Sum_probs=47.4
Q ss_pred eEEEccccccCCCCCCCceeEEEechhhhccCHH-HHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHH
Q psy8370 133 KCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDE-DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLP 211 (256)
Q Consensus 133 ~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 211 (256)
.+..+|+.+....-. ..+|+|+....--.-+++ --..+++.+++.++|||.+... . ...
T Consensus 34 ~L~~gDa~~~l~~l~-~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Ty-----------s--------~a~ 93 (124)
T PF05430_consen 34 TLWFGDAREMLPQLD-ARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATY-----------S--------SAG 93 (124)
T ss_dssp EEEES-HHHHHHHB--T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES---------------------BH
T ss_pred EEEEcHHHHHHHhCc-ccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEe-----------e--------chH
Confidence 566777765443221 379999987432222111 1136999999999999988862 1 125
Q ss_pred HHHHHHHhcCCcEEEee
Q psy8370 212 QFCLLFSKANLKCVKSE 228 (256)
Q Consensus 212 ~~~~~l~~~gf~~~~~~ 228 (256)
.+++.|.++||.+.+..
T Consensus 94 ~Vr~~L~~aGF~v~~~~ 110 (124)
T PF05430_consen 94 AVRRALQQAGFEVEKVP 110 (124)
T ss_dssp HHHHHHHHCTEEEEEEE
T ss_pred HHHHHHHHcCCEEEEcC
Confidence 68999999999986544
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.14 Score=42.57 Aligned_cols=98 Identities=22% Similarity=0.247 Sum_probs=57.7
Q ss_pred CCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
..++.+||-+|+| .|..+..++.. |..+|+++|.+++-++.+++. .. ..+......++.+..... +.+|+|+.
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga--~~vi~~~~~~~~~~~~~~--g~~D~vid 241 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GA--DKLVNPQNDDLDHYKAEK--GYFDVSFE 241 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CC--cEEecCCcccHHHHhccC--CCCCEEEE
Confidence 3467889988875 34455555544 555799999999888877653 11 011011111222221111 25899886
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
...- ...++.+.+.|++||.+++..
T Consensus 242 ~~G~--------~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 242 VSGH--------PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred CCCC--------HHHHHHHHHHhhcCCEEEEEc
Confidence 5331 135666778899999999864
|
|
| >KOG0821|consensus | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.11 Score=39.67 Aligned_cols=66 Identities=18% Similarity=0.298 Sum_probs=50.1
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccc
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 141 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~ 141 (256)
...+.-.+.-|.+||.|.|..++.+++.+..+...||.+...+.-.+-..+....+. .++.+|+..
T Consensus 44 K~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~~~-~IHh~D~LR 109 (326)
T KOG0821|consen 44 KKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPGKL-RIHHGDVLR 109 (326)
T ss_pred HhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCcce-EEeccccce
Confidence 334455678899999999999999999998899999999887776665555433455 666777644
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.42 Score=39.93 Aligned_cols=102 Identities=18% Similarity=0.068 Sum_probs=63.9
Q ss_pred CCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc-ccc-ccCCCCCCCceeEE
Q psy8370 79 DPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GIQ-DFKPEDLNIKYDVI 154 (256)
Q Consensus 79 ~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~-d~~-~~~~~~~~~~~D~V 154 (256)
..++.+|+-+|||+ |.++..+++. |+.+|+++|.++.=++.|++...... + ..... +.. ..........+|++
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~--~-~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADV--V-VNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeE--e-ecCccccHHHHHHHHhCCCCCCEE
Confidence 34445999999995 6666555544 56699999999999999987543210 0 01111 110 00011111259999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
+-... . ...+..+.+.++|+|.+.+.-..
T Consensus 243 ie~~G---~-----~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 243 IEAVG---S-----PPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred EECCC---C-----HHHHHHHHHHhcCCCEEEEEecc
Confidence 87644 1 24788889999999999987544
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.29 Score=41.40 Aligned_cols=109 Identities=15% Similarity=0.052 Sum_probs=65.1
Q ss_pred CCCCCCeEEEEcCCC-CHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcc-ccc-cCCCCCCCceeE
Q psy8370 78 SDPGKTRVLDVGAGI-GRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG-IQD-FKPEDLNIKYDV 153 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d-~~~-~~~~~~~~~~D~ 153 (256)
...++.+||.+|||. |..+..++.... .++++++.+++..+.+++.... .+......+ +.. .........+|+
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~---~vi~~~~~~~~~~~l~~~~~~~~~D~ 257 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA---ETINFEEVDDVVEALRELTGGRGPDV 257 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc---EEEcCCcchHHHHHHHHHcCCCCCCE
Confidence 456788999999987 778777776643 3699999999988888765211 110111111 111 100011125898
Q ss_pred EEechhhh-------cc------CHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 154 IWIQWVLM-------FI------LDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 154 V~~~~~l~-------~~------~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|+....-. ++ +..+....+..+.+.++++|.+++..
T Consensus 258 vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 258 CIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 88753211 11 00112357788899999999999874
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.5 Score=37.27 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=69.2
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHh----c--CCeEEEEeCCH--------------------------HHHHHHHHHHH
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAK----H--FDKIDLLEQSS--------------------------KFIEQAKEEIL 125 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~----~--~~~v~~vD~s~--------------------------~~~~~a~~~~~ 125 (256)
...-++.|+|.||-.|..+..+... + ..+++++|.=+ ...+.+++++.
T Consensus 71 ~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~ 150 (248)
T PF05711_consen 71 AEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFA 150 (248)
T ss_dssp HTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCC
T ss_pred hcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHH
Confidence 3456789999999999876654321 1 12677776321 12344444444
Q ss_pred hcC---CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCC
Q psy8370 126 KDC---DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDE 202 (256)
Q Consensus 126 ~~~---~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 202 (256)
..+ .++ .++.+.+.+..+......+-++....-++ +.....|+.++..|.|||++++-+... .++
T Consensus 151 ~~gl~~~~v-~~vkG~F~dTLp~~p~~~IAll~lD~DlY----esT~~aLe~lyprl~~GGiIi~DDY~~-~gc------ 218 (248)
T PF05711_consen 151 RYGLLDDNV-RFVKGWFPDTLPDAPIERIALLHLDCDLY----ESTKDALEFLYPRLSPGGIIIFDDYGH-PGC------ 218 (248)
T ss_dssp CTTTSSTTE-EEEES-HHHHCCC-TT--EEEEEE---SH----HHHHHHHHHHGGGEEEEEEEEESSTTT-HHH------
T ss_pred HcCCCcccE-EEECCcchhhhccCCCccEEEEEEeccch----HHHHHHHHHHHhhcCCCeEEEEeCCCC-hHH------
Confidence 332 356 88999987776643322454444442222 445679999999999999999864333 111
Q ss_pred CCceeeCHHHHHHHHHhcCCcE
Q psy8370 203 DSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
.+.+.+.+.+.|...
T Consensus 219 -------r~AvdeF~~~~gi~~ 233 (248)
T PF05711_consen 219 -------RKAVDEFRAEHGITD 233 (248)
T ss_dssp -------HHHHHHHHHHTT--S
T ss_pred -------HHHHHHHHHHcCCCC
Confidence 234556667777643
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.18 Score=39.35 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=30.5
Q ss_pred HHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 168 IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 168 ~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
....+.+++|+|||||.+++.... .....+..+++++||.+..
T Consensus 51 ~~~~l~E~~RVLKpgg~l~if~~~----------------~~~~~~~~al~~~GF~l~~ 93 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVSFYGW----------------NRVDRFMAAWKNAGFSVVG 93 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEEEecc----------------ccHHHHHHHHHHCCCEEee
Confidence 457889999999999988863100 1124566788899998663
|
|
| >KOG2198|consensus | Back alignment and domain information |
|---|
Probab=94.24 E-value=2.7 Score=34.92 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=69.2
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCC-----eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCC-----
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFD-----KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPED----- 146 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~----- 146 (256)
...++.+|||+.+-.|.=+..+.+..++ .|++-|.++.=+........... ..+ .+...++..++...
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~-~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNL-LVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcce-eeecccceeccccccccCc
Confidence 5688999999999999988877776532 58888999876666666554332 122 33333433332210
Q ss_pred --CCCceeEEEech-------------hhhc---------cCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 147 --LNIKYDVIWIQW-------------VLMF---------ILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 147 --~~~~~D~V~~~~-------------~l~~---------~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
....||-|++.. .+.. ++ .-...++.+..+.||+||.++-++
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~-~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLH-ALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCCh-HHHHHHHHHHHHHhcCCCEEEEec
Confidence 113588887541 1111 11 112458889999999999999863
|
|
| >KOG2078|consensus | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.028 Score=46.99 Aligned_cols=63 Identities=21% Similarity=0.186 Sum_probs=50.2
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--C-CcceEEEccccccC
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--D-KLDKCYNVGIQDFK 143 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~-~i~~~~~~d~~~~~ 143 (256)
..++..|.|+-||.|-++..++..++ +|++.|.++++++..+.+..... . ++ ..+..|..++.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~i-ei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAI-EIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhhe-eeecccHHHHh
Confidence 37789999999999999999988886 99999999999999998876432 1 24 56666655443
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.11 Score=39.10 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=55.0
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCC-HHHHHHHHHHHHhcC----CCcceEEEccccccCCCC-------CCC
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQS-SKFIEQAKEEILKDC----DKLDKCYNVGIQDFKPED-------LNI 149 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~~~~----~~i~~~~~~d~~~~~~~~-------~~~ 149 (256)
...|+.+|||.-.....+..... .+..+|++ |++++.-++.+...+ .+. .++..|+.+....+ +.+
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~-~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~-~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAG-GVRWFEVDLPEVIALKRRLLPESGARPPANY-RYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTT-TEEEEEEE-HHHHHHHHHHHHHTHHHHHEES-SEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CcEEEEcCCCCCchHHHhhcccc-ceEEEEeCCHHHHHHHHHHHHhCcccCCcce-eEEeccccchhhHHHHHHhCCCCC
Confidence 34899999999988888855432 34444444 445555555555432 124 57888887532100 113
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHH
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLC 175 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~ 175 (256)
..-++++-.++.+++++....+++.+
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 56788888999999988888887765
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.28 Score=43.93 Aligned_cols=101 Identities=14% Similarity=0.035 Sum_probs=62.6
Q ss_pred CeEEEEcCCCCHhHHHHHHh----cCC-eEEEEeCCHHHHHHHHHHHH---hc-------CCCcceEEEccccccCCCCC
Q psy8370 83 TRVLDVGAGIGRISKYLLAK----HFD-KIDLLEQSSKFIEQAKEEIL---KD-------CDKLDKCYNVGIQDFKPEDL 147 (256)
Q Consensus 83 ~~vLDiG~G~G~~~~~l~~~----~~~-~v~~vD~s~~~~~~a~~~~~---~~-------~~~i~~~~~~d~~~~~~~~~ 147 (256)
..|+-+|+|-|-+....++. +.+ +|++||-++.+......+.. .+ +..+ +++..|++.+.....
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~V-tII~sDMR~W~~pe~ 780 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTL-EVIVADGRTIATAAE 780 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeE-EEEeCcccccccccc
Confidence 45899999999877665443 223 89999999775544444432 22 2246 899999999864320
Q ss_pred ---------CCceeEEEechhhhccCHHHHHHHHHHHhhhcCC----CcE
Q psy8370 148 ---------NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNK----NGI 184 (256)
Q Consensus 148 ---------~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkp----gG~ 184 (256)
-+.+|+|++-..-.+=..+--...|..+.+.||+ +|+
T Consensus 781 ~~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 781 NGSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 1369999985321111112223466667777765 665
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.3 Score=37.72 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=56.0
Q ss_pred HHHHHHHhccCC--CCCCCeEEEEcCCCCHhHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEc-c
Q psy8370 67 QFLSSLYCQKKS--DPGKTRVLDVGAGIGRISKYLLA--KHFDKIDLLEQSSKFIEQAKEEILKDC---DKLDKCYNV-G 138 (256)
Q Consensus 67 ~~l~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~i~~~~~~-d 138 (256)
+.+..++..-.. ..++.++||||.|.--.--.+-. -|+ +.+|.|+++..++.|+..+..+. ..+ ++... |
T Consensus 62 h~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I-~lr~qk~ 139 (292)
T COG3129 62 HHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAI-RLRRQKD 139 (292)
T ss_pred HHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhhe-eEEeccC
Confidence 445555522222 23567889999887543333222 234 89999999999999999887552 223 33322 2
Q ss_pred ccccCCC--CCCCceeEEEechhhhcc
Q psy8370 139 IQDFKPE--DLNIKYDVIWIQWVLMFI 163 (256)
Q Consensus 139 ~~~~~~~--~~~~~~D~V~~~~~l~~~ 163 (256)
-....+. .....||+++|+--+|..
T Consensus 140 ~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 140 SDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred ccccccccccccceeeeEecCCCcchh
Confidence 2222211 102479999999666643
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.74 Score=31.29 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCCC-HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 81 GKTRVLDVGAGIG-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 81 ~~~~vLDiG~G~G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
..++|+|+|-|.= ..+..|+++|+ .++++|+++. .+. ..+ .+...|+.+....-- ...|+|++..
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~---~a~-------~g~-~~v~DDitnP~~~iY-~~A~lIYSiR- 78 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK---TAP-------EGL-RFVVDDITNPNISIY-EGADLIYSIR- 78 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc---cCc-------ccc-eEEEccCCCccHHHh-hCccceeecC-
Confidence 4569999998865 46677777888 7999999986 111 245 789999887643211 1378888752
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|++++...+-.+.+.++ ..+++.
T Consensus 79 ----pppEl~~~ildva~aVg--a~l~I~ 101 (129)
T COG1255 79 ----PPPELQSAILDVAKAVG--APLYIK 101 (129)
T ss_pred ----CCHHHHHHHHHHHHhhC--CCEEEE
Confidence 33556666666666554 345554
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.84 Score=38.52 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=61.7
Q ss_pred CCCCCCeEEEEcCCCCHh----HHHHHHh--cCC--eEEEEeC----CHHHHHHHHHHHHhc----CCCcceEEEc---c
Q psy8370 78 SDPGKTRVLDVGAGIGRI----SKYLLAK--HFD--KIDLLEQ----SSKFIEQAKEEILKD----CDKLDKCYNV---G 138 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~----~~~l~~~--~~~--~v~~vD~----s~~~~~~a~~~~~~~----~~~i~~~~~~---d 138 (256)
......+|+|+|.|.|.- ...|+.+ |++ ++|+|+. +...++.+.+++... +... +|... +
T Consensus 107 ~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~f-ef~~v~~~~ 185 (374)
T PF03514_consen 107 EGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPF-EFHPVVVES 185 (374)
T ss_pred ccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccE-EEEecccCc
Confidence 456778999999999963 3334333 233 8999999 777777777666532 3333 44442 3
Q ss_pred ccccCCC---CCCCceeEEEechhhhccCHH------HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 139 IQDFKPE---DLNIKYDVIWIQWVLMFILDE------DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 139 ~~~~~~~---~~~~~~D~V~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
++++.+. -..+..=+|.+...+|++.++ ....+|+. .+.|+|.-.+++.
T Consensus 186 ~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~-ir~L~P~vvv~~E 243 (374)
T PF03514_consen 186 LEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRV-IRSLNPKVVVLVE 243 (374)
T ss_pred hhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHH-HHhcCCCEEEEEe
Confidence 3333211 011233344455678888521 23345544 4578998655554
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >KOG1201|consensus | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.58 Score=37.62 Aligned_cols=78 Identities=22% Similarity=0.131 Sum_probs=57.8
Q ss_pred CCCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC--------CC
Q psy8370 79 DPGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--------DL 147 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~--------~~ 147 (256)
...++.||=-|+|.|. ++..++++|+ .+...|++++..+...+..+..+ .+ ..+.+|+.+...- .+
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g-~~-~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG-EA-KAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC-ce-eEEEecCCCHHHHHHHHHHHHHh
Confidence 4557889988988883 7778888888 89999999988887777777654 55 7788887665321 11
Q ss_pred CCceeEEEechh
Q psy8370 148 NIKYDVIWIQWV 159 (256)
Q Consensus 148 ~~~~D~V~~~~~ 159 (256)
.|..|+++.+..
T Consensus 112 ~G~V~ILVNNAG 123 (300)
T KOG1201|consen 112 VGDVDILVNNAG 123 (300)
T ss_pred cCCceEEEeccc
Confidence 367999998854
|
|
| >KOG0024|consensus | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.22 Score=40.40 Aligned_cols=107 Identities=12% Similarity=0.088 Sum_probs=65.8
Q ss_pred ccCCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEE-EccccccCCC-CCCC
Q psy8370 75 QKKSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCY-NVGIQDFKPE-DLNI 149 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~-~~d~~~~~~~-~~~~ 149 (256)
+......+.+||-+|+|. |..+..+++. |+.+|+.+|+++.-++.|++ +.... .+..... ..++.+.... .+..
T Consensus 163 r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~ 241 (354)
T KOG0024|consen 163 RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTDPSSHKSSPQELAELVEKALGKK 241 (354)
T ss_pred hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEeeccccccHHHHHHHHHhhcccc
Confidence 344678899999999996 4444444433 67799999999999999998 43211 1110000 0111111110 0112
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+|+.+....+ +..++.....++++|.+++...
T Consensus 242 ~~d~~~dCsG~--------~~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 242 QPDVTFDCSGA--------EVTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred CCCeEEEccCc--------hHHHHHHHHHhccCCEEEEecc
Confidence 58998877443 3456667788899999888754
|
|
| >KOG3924|consensus | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.24 Score=41.24 Aligned_cols=121 Identities=17% Similarity=0.096 Sum_probs=74.2
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHH---HH----hcC---CCcceEE
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEE---IL----KDC---DKLDKCY 135 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~---~~----~~~---~~i~~~~ 135 (256)
..+..+. +..+..+...-.|+|+|-|.+...++..+ +..-+|+++....-+.+..+ +. ..+ ..+ ..+
T Consensus 179 ~ql~si~-dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~-~~i 256 (419)
T KOG3924|consen 179 EQLRSIV-DELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKI-ETI 256 (419)
T ss_pred HHHHHHH-HHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCce-eec
Confidence 4555555 55568889999999999999998886654 44777887775444433332 21 112 233 566
Q ss_pred EccccccCCCCC-CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEeccc
Q psy8370 136 NVGIQDFKPEDL-NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 192 (256)
Q Consensus 136 ~~d~~~~~~~~~-~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 192 (256)
++++.+...... ....++|+++.+.-. +++..=++++..-+++|..++-.....
T Consensus 257 ~gsf~~~~~v~eI~~eatvi~vNN~~Fd---p~L~lr~~eil~~ck~gtrIiS~~~L~ 311 (419)
T KOG3924|consen 257 HGSFLDPKRVTEIQTEATVIFVNNVAFD---PELKLRSKEILQKCKDGTRIISSKPLV 311 (419)
T ss_pred ccccCCHHHHHHHhhcceEEEEecccCC---HHHHHhhHHHHhhCCCcceEecccccc
Confidence 666654432111 124688887765321 333445558888889998888754433
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.73 Score=37.86 Aligned_cols=95 Identities=17% Similarity=0.083 Sum_probs=58.8
Q ss_pred CCCCCCeEEEEcCC-CCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc-----CCCCCCCce
Q psy8370 78 SDPGKTRVLDVGAG-IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF-----KPEDLNIKY 151 (256)
Q Consensus 78 ~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~-----~~~~~~~~~ 151 (256)
...++.+||..|+| .|..+..++.....+|++++.++...+.+++. + +..+....-... .... +.+
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~----g--~~~~~~~~~~~~~~~~~~~~~--~~~ 233 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL----G--ADEVLNSLDDSPKDKKAAGLG--GGF 233 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh----C--CCEEEcCCCcCHHHHHHHhcC--CCc
Confidence 46677899888876 36777777665333799999999887777542 1 101111110000 1112 368
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+|+..... ...++.+.+.|+++|.++..
T Consensus 234 D~vid~~g~--------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 234 DVIFDFVGT--------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred eEEEECCCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 998864221 24677788999999999875
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.38 Score=42.06 Aligned_cols=99 Identities=10% Similarity=0.026 Sum_probs=59.3
Q ss_pred CCCCeEEEEcCCCC-HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc---------------C
Q psy8370 80 PGKTRVLDVGAGIG-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF---------------K 143 (256)
Q Consensus 80 ~~~~~vLDiG~G~G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~---------------~ 143 (256)
.++.+|+-+|+|.- ..+..++......|+++|.++.-.+.++.. + . .++..+..+. .
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l----G--a-~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM----G--A-EFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C--C-eEEeccccccccccccceeecCHHHH
Confidence 45789999999854 555555444333799999999877766652 1 1 2222222110 0
Q ss_pred ------CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 144 ------PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 144 ------~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
..+.-..+|+|+....+..-+.+ .-+.+++.+.+|||+.++-
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCCCCEEEE
Confidence 00001358999887654443212 2366778899999998774
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.23 Score=42.45 Aligned_cols=109 Identities=21% Similarity=0.113 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccc----cccCCC-CCCCcee
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGI----QDFKPE-DLNIKYD 152 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~----~~~~~~-~~~~~~D 152 (256)
.....+|-+|-|.|.+...+-.... ..+++|+++|+|++.+...+.-.. .+. .++-.|- .+.... .+...||
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~-~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRN-KVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhh-hhhHhhchHHHHHHhhccccccCCc
Confidence 4457788899999998887744333 499999999999999999875322 122 2222222 111111 1124799
Q ss_pred EEEech-h--hhcc--CHHH--HHHHHHHHhhhcCCCcEEEEEe
Q psy8370 153 VIWIQW-V--LMFI--LDED--IIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 153 ~V~~~~-~--l~~~--~~~~--~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
++.... . -|.+ |+.. ...++..+..+|.|.|.+++--
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence 988541 1 2222 2222 3458999999999999998853
|
|
| >KOG2671|consensus | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.2 Score=40.88 Aligned_cols=114 Identities=10% Similarity=-0.029 Sum_probs=77.8
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHH-------HHHHHHHhcC--CCcceEEEccccccCCCCC
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIE-------QAKEEILKDC--DKLDKCYNVGIQDFKPEDL 147 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~-------~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~ 147 (256)
....+++-|.|--.|||.+....+.-|. -|+|.||+-.++. ..+.+++..+ ...-.+..+|....+.-..
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn 282 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSN 282 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhc
Confidence 4467889999999999999999877676 8999999977765 2445565544 2222567777776654332
Q ss_pred CCceeEEEech------------------------hhhccCH-------HHHHHHHHHHhhhcCCCcEEEEEeccc
Q psy8370 148 NIKYDVIWIQW------------------------VLMFILD-------EDIIKFLNLCKQILNKNGIIIIKDNVA 192 (256)
Q Consensus 148 ~~~~D~V~~~~------------------------~l~~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~ 192 (256)
..||.|+|.= ...|.|. +-...+|.-.++.|..||.+++-.+..
T Consensus 283 -~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 283 -LKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred -ceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 4799999760 0112211 124456777899999999999865533
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.36 E-value=1.1 Score=33.61 Aligned_cols=108 Identities=14% Similarity=0.107 Sum_probs=69.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHh----cC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC-----CC
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAK----HF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-----NI 149 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~----~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-----~~ 149 (256)
.++..|+|+|.-.|..+.+.+.. |. .+|.++|++-..++.+... ..++ .++.++-.+..-... .+
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----~p~i-~f~egss~dpai~eqi~~~~~~ 142 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----VPDI-LFIEGSSTDPAIAEQIRRLKNE 142 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----CCCe-EEEeCCCCCHHHHHHHHHHhcC
Confidence 45789999999999877776543 42 2899999985544333221 1466 888888665432110 11
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCC
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 194 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 194 (256)
.--+.++-.+-|+. +...+-++...+.|.-|-++++.+..-..
T Consensus 143 y~kIfvilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 143 YPKIFVILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred CCcEEEEecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 22444555555655 55567788888899999999987655444
|
|
| >KOG1099|consensus | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.51 Score=36.42 Aligned_cols=97 Identities=20% Similarity=0.172 Sum_probs=62.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC----------eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC----
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD----------KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE---- 145 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~----------~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~---- 145 (256)
..-.+++|+.+-.|.++..|.++.+. .+++||+.+-+ .. ..+ .-+++|+......
T Consensus 40 ~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma---------PI-~GV-~qlq~DIT~~stae~Ii 108 (294)
T KOG1099|consen 40 EGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA---------PI-EGV-IQLQGDITSASTAEAII 108 (294)
T ss_pred hhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC---------cc-Cce-EEeecccCCHhHHHHHH
Confidence 34578999999999999988765431 38999986521 11 123 4556666554211
Q ss_pred --CCCCceeEEEechh-----hhccCH----HHHHHHHHHHhhhcCCCcEEEE
Q psy8370 146 --DLNIKYDVIWIQWV-----LMFILD----EDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 146 --~~~~~~D~V~~~~~-----l~~~~~----~~~~~~l~~~~~~LkpgG~l~i 187 (256)
.+..+.|+|+|... +|.+.. +-+...|.-...+|+|||.|+-
T Consensus 109 ~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 109 EHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 11236899998743 454422 2345566677889999999986
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.82 E-value=2.7 Score=34.88 Aligned_cols=77 Identities=17% Similarity=0.116 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.+++||=.|++.|. ++..++++|+ +|+.++-+++.++...+.+...+.++ .++..|+.+...... .+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~-~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEA-LAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcE-EEEEecCCCHHHHHHHHHHHHHHCC
Confidence 45678888865553 4455566677 89999998877776666655444455 677888766432110 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 85 ~iD~lInnAg 94 (334)
T PRK07109 85 PIDTWVNNAM 94 (334)
T ss_pred CCCEEEECCC
Confidence 6899987654
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.66 E-value=1.5 Score=36.37 Aligned_cols=93 Identities=16% Similarity=0.109 Sum_probs=56.1
Q ss_pred CCCCCeEEEEcCC-CCHhHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 79 DPGKTRVLDVGAG-IGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 79 ~~~~~~vLDiG~G-~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
..++.+||-+||| .|.++..++++ +..+|+++|.++.-++.+++ .+ . .... .++. ... .+|+|+
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~--~-~~~~---~~~~-~~~--g~d~vi 227 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----AD--E-TYLI---DDIP-EDL--AVDHAF 227 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cC--c-eeeh---hhhh-hcc--CCcEEE
Confidence 4568899999986 34444555543 34589999999887777654 11 1 1111 1111 111 488888
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
-...-. .....++...+.|+++|.+++.-
T Consensus 228 D~~G~~-----~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 228 ECVGGR-----GSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred ECCCCC-----ccHHHHHHHHHhCcCCcEEEEEe
Confidence 643211 01246777888999999998764
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.65 E-value=2.5 Score=32.75 Aligned_cols=107 Identities=10% Similarity=0.066 Sum_probs=60.3
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
++++||-.|++.|. ++..+++.|+ +|++++-+++..+...+.....+ ++ .++.+|+.+...... .+
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~-~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYG-NI-HYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-Ce-EEEECCCCCHHHHHHHHHHHHHHhC
Confidence 35688988876442 3444555666 89999998876655544443322 45 677788765431100 12
Q ss_pred ceeEEEechhhhcc-CHH--------------HHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 150 KYDVIWIQWVLMFI-LDE--------------DIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 150 ~~D~V~~~~~l~~~-~~~--------------~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+|.++........ +.. ....+++.+.+.++++|.+++...
T Consensus 81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 46877765432110 001 112345666667777887777643
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.59 E-value=3.7 Score=32.50 Aligned_cols=105 Identities=10% Similarity=-0.005 Sum_probs=58.4
Q ss_pred CCCeEEEEcCCC--C---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------C
Q psy8370 81 GKTRVLDVGAGI--G---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------L 147 (256)
Q Consensus 81 ~~~~vLDiG~G~--G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~ 147 (256)
.++++|-.|+++ | ..+..+++.|+ +|+.++.++...+...+.....+ .. .++..|+.+..... .
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~-~~-~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELD-AP-IFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhc-cc-eEEecCcCCHHHHHHHHHHHHHH
Confidence 467888889764 3 25555666676 78888887654333333222211 23 45667766542111 0
Q ss_pred CCceeEEEechhhhc----------cCHHHHHHH-----------HHHHhhhcCCCcEEEEE
Q psy8370 148 NIKYDVIWIQWVLMF----------ILDEDIIKF-----------LNLCKQILNKNGIIIIK 188 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~----------~~~~~~~~~-----------l~~~~~~LkpgG~l~i~ 188 (256)
.+..|+++.+..... .+.+++.+. .+.+.+.|+.+|.++..
T Consensus 86 ~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~i 147 (258)
T PRK07533 86 WGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTM 147 (258)
T ss_pred cCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEE
Confidence 146899988754321 222333333 35566677777877664
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.41 E-value=1.9 Score=34.74 Aligned_cols=85 Identities=13% Similarity=0.086 Sum_probs=50.9
Q ss_pred eEEEEcCCC--CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhh
Q psy8370 84 RVLDVGAGI--GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 161 (256)
Q Consensus 84 ~vLDiG~G~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~ 161 (256)
+|.=||+|. |.++..+...|. +|+++|.+++..+.+.+. + .+ .....+.. . .. ..|+|+...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~----g-~~-~~~~~~~~-~---~~--~aDlVilav--- 65 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIER----G-LV-DEASTDLS-L---LK--DCDLVILAL--- 65 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC----C-Cc-ccccCCHh-H---hc--CCCEEEEcC---
Confidence 466678774 456666656666 899999998877766542 1 11 11111111 1 12 479888763
Q ss_pred ccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 162 FILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 162 ~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
|.....+.++++...++++..+.
T Consensus 66 --p~~~~~~~~~~l~~~l~~~~ii~ 88 (279)
T PRK07417 66 --PIGLLLPPSEQLIPALPPEAIVT 88 (279)
T ss_pred --CHHHHHHHHHHHHHhCCCCcEEE
Confidence 33444567788888888765443
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.38 E-value=2.4 Score=34.32 Aligned_cols=107 Identities=13% Similarity=0.043 Sum_probs=59.1
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCH-HHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSS-KFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~-~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
+++++|-.|++.|. ++..++++|+ +|+.++.++ ...+.....+...+.++ .++..|+.+...... .
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKC-LLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeE-EEEEccCCCHHHHHHHHHHHHHHc
Confidence 35688888876553 4555556676 788887764 22333333343333345 677888765432110 1
Q ss_pred CceeEEEechhhh-------ccCHH-----------HHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 149 IKYDVIWIQWVLM-------FILDE-----------DIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~l~-------~~~~~-----------~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+.+|+|+.+.... ..+.+ ....+++.+.+.++++|.+++..
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 3578888654321 11111 23345556666677777777653
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.35 E-value=4 Score=32.03 Aligned_cols=77 Identities=13% Similarity=0.025 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
.++++|=.|++.|. ++..+++.|+ +|+.++.++..++...+.+...+.++ .++..|+.+..... ..+
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKA-HAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeE-EEEecCCCCHHHHHHHHHHHHHhcC
Confidence 45678888866552 4555556676 89999988776665555554433344 56777776543110 013
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 86 ~id~vi~~ag 95 (254)
T PRK08085 86 PIDVLINNAG 95 (254)
T ss_pred CCCEEEECCC
Confidence 6899998754
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=91.27 E-value=1.2 Score=30.40 Aligned_cols=105 Identities=20% Similarity=0.174 Sum_probs=62.6
Q ss_pred CCCCHhHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC--CCCCceeEEEechhhhccC
Q psy8370 90 AGIGRISKYLLAK---HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIWIQWVLMFIL 164 (256)
Q Consensus 90 ~G~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~--~~~~~~D~V~~~~~l~~~~ 164 (256)
||.|..+..+++. +...|+.+|.+++..+.+++. .+ .++.+|..+.... .+-..+|.|++..-
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~------~~-~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE------GV-EVIYGDATDPEVLERAGIEKADAVVILTD----- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT------TS-EEEES-TTSHHHHHHTTGGCESEEEEESS-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc------cc-ccccccchhhhHHhhcCccccCEEEEccC-----
Confidence 5667777766553 233899999999987777654 24 7888888765321 11136787777532
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEE
Q psy8370 165 DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 225 (256)
Q Consensus 165 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~ 225 (256)
++.....+-...+.+.|...++..- ...+..+.+++.|...+
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~ii~~~-------------------~~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 72 DDEENLLIALLARELNPDIRIIARV-------------------NDPENAELLRQAGADHV 113 (116)
T ss_dssp SHHHHHHHHHHHHHHTTTSEEEEEE-------------------SSHHHHHHHHHTT-SEE
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEE-------------------CCHHHHHHHHHCCcCEE
Confidence 2333334445567777887777641 12344667777876554
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=91.27 E-value=4.1 Score=33.46 Aligned_cols=125 Identities=15% Similarity=0.150 Sum_probs=61.4
Q ss_pred CCCCeEEEEcCCC-CHhH-HHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGI-GRIS-KYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~-G~~~-~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.++.+|+-+|+|. |... ..+...+...|+.++.+++-.+...+.+ + . .... +.+....-. .+|+|++.
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~---g--~-~~~~--~~~~~~~l~--~aDvVi~a 245 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL---G--G-NAVP--LDELLELLN--EADVVISA 245 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc---C--C-eEEe--HHHHHHHHh--cCCEEEEC
Confidence 4688999999863 3322 3333335668999999876443332222 1 1 1121 111111112 57999987
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHh
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 219 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (256)
-.-.+. ...++.+.+....++.+++--.....-............++.+++..+.++
T Consensus 246 t~~~~~-----~~~~~~~~~~~~~~~~~viDlavPrdi~~~v~~l~~v~l~~vDdl~~~~~~ 302 (311)
T cd05213 246 TGAPHY-----AKIVERAMKKRSGKPRLIVDLAVPRDIEPEVGELEGVRLYTIDDLEEVVEE 302 (311)
T ss_pred CCCCch-----HHHHHHHHhhCCCCCeEEEEeCCCCCCchhhccCCCcEEEEHHHhHHHHHH
Confidence 543222 123333333232245555532222222222223344556788888877664
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.14 E-value=2.9 Score=33.18 Aligned_cols=76 Identities=13% Similarity=0.125 Sum_probs=44.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
+++++|-.|++.|. ++..++.+|+ .|++++.++.-++...+.+...+.++ .++..|+.+...... .+
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEG-LGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCce-EEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46788888864432 4444555666 79999988776555544444333344 667778765321100 13
Q ss_pred ceeEEEech
Q psy8370 150 KYDVIWIQW 158 (256)
Q Consensus 150 ~~D~V~~~~ 158 (256)
.+|+++.+.
T Consensus 86 ~iD~vi~~a 94 (264)
T PRK07576 86 PIDVLVSGA 94 (264)
T ss_pred CCCEEEECC
Confidence 579988653
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.94 E-value=0.81 Score=37.08 Aligned_cols=102 Identities=9% Similarity=0.045 Sum_probs=66.1
Q ss_pred CCCCCeEEEEcCCC-CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 79 DPGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 79 ~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..++.+|.-||.|. |..+..++......|+.+|.|..-+......+. .++ ..+..+..++...-. ..|+|+..
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~---~rv-~~~~st~~~iee~v~--~aDlvIga 238 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG---GRV-HTLYSTPSNIEEAVK--KADLVIGA 238 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC---cee-EEEEcCHHHHHHHhh--hccEEEEE
Confidence 34567888899884 566666655444499999999776665555543 345 555555555443333 68999876
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
-.+--- ....-..+++.+.||||+.++=+
T Consensus 239 VLIpga--kaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 239 VLIPGA--KAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred EEecCC--CCceehhHHHHHhcCCCcEEEEE
Confidence 554333 22234677888999999988754
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.64 Score=32.38 Aligned_cols=88 Identities=20% Similarity=0.108 Sum_probs=55.0
Q ss_pred CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc---C-CCCCCCceeEEEechhhhccCHH
Q psy8370 91 GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF---K-PEDLNIKYDVIWIQWVLMFILDE 166 (256)
Q Consensus 91 G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~---~-~~~~~~~~D~V~~~~~l~~~~~~ 166 (256)
|.|..+..+++....+|+++|.++.-.+.+++.- ...+...+-.++ . .......+|+|+-...
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~G------a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELG------ADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------- 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT------ESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhc------ccccccccccccccccccccccccceEEEEecC-------
Confidence 3577777777654469999999998888877542 112222221111 0 0011126999987633
Q ss_pred HHHHHHHHHhhhcCCCcEEEEEeccc
Q psy8370 167 DIIKFLNLCKQILNKNGIIIIKDNVA 192 (256)
Q Consensus 167 ~~~~~l~~~~~~LkpgG~l~i~~~~~ 192 (256)
-...++....+++|+|.+++.....
T Consensus 68 -~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 -SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp -SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred -cHHHHHHHHHHhccCCEEEEEEccC
Confidence 1257788889999999999975443
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=90.75 E-value=0.61 Score=32.41 Aligned_cols=88 Identities=15% Similarity=0.171 Sum_probs=47.7
Q ss_pred CCCeEEEEcCCCC-HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 81 GKTRVLDVGAGIG-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 81 ~~~~vLDiG~G~G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
...+|+|+|-|.= ..+..|.+.|+ .|+++|+.+. .+ . ..+ .++..|+.+....-- ...|+|++..-
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~---~a----~---~g~-~~v~DDif~P~l~iY-~~a~lIYSiRP 79 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR---KA----P---EGV-NFVVDDIFNPNLEIY-EGADLIYSIRP 79 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S--------------ST-TEE---SSS--HHHH-TTEEEEEEES-
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc---cc----c---cCc-ceeeecccCCCHHHh-cCCcEEEEeCC
Confidence 4459999999965 46677777787 8999999987 11 1 245 789999987543211 14899998643
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
- .+++..+.++++.+ |.-+++.
T Consensus 80 P-----~El~~~il~lA~~v--~adlii~ 101 (127)
T PF03686_consen 80 P-----PELQPPILELAKKV--GADLIIR 101 (127)
T ss_dssp ------TTSHHHHHHHHHHH--T-EEEEE
T ss_pred C-----hHHhHHHHHHHHHh--CCCEEEE
Confidence 2 33345555555543 4566665
|
; PDB: 2K4M_A. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=90.41 E-value=2 Score=33.74 Aligned_cols=98 Identities=19% Similarity=0.128 Sum_probs=57.5
Q ss_pred CCCCCeEEEEcCCC-CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccc-c-CCCCCCCceeEEE
Q psy8370 79 DPGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD-F-KPEDLNIKYDVIW 155 (256)
Q Consensus 79 ~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~-~-~~~~~~~~~D~V~ 155 (256)
..++.+||..|+|. |..+..++.....++++++.++...+.+++.-. ..+......+... . .... +.+|+++
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~--~~~d~vi 206 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGA---DHVIDYKEEDLEEELRLTGG--GGADVVI 206 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC---ceeccCCcCCHHHHHHHhcC--CCCCEEE
Confidence 36788999999985 666666655443589999999877766644310 0000101001100 0 0111 3699998
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
....-. ..+..+.+.|+++|.++...
T Consensus 207 ~~~~~~--------~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 207 DAVGGP--------ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred ECCCCH--------HHHHHHHHhcccCCEEEEEc
Confidence 753210 34566778889999998753
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=90.36 E-value=1.7 Score=35.52 Aligned_cols=86 Identities=17% Similarity=0.124 Sum_probs=52.5
Q ss_pred CCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 81 GKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 81 ~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
++.+||=+||| .|.++..+++. |+..|.++|.++.-++.+... ..+ |..+. .. ..+|+|+-..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---------~~i--~~~~~--~~--~g~Dvvid~~ 208 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---------EVL--DPEKD--PR--RDYRAIYDAS 208 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---------ccc--Chhhc--cC--CCCCEEEECC
Confidence 46788888875 45566666544 565677888887665554321 111 11110 11 2589988653
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.- ...++.+.+.|+++|.+++.-
T Consensus 209 G~--------~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 209 GD--------PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred CC--------HHHHHHHHHhhhcCcEEEEEe
Confidence 31 235667788999999999764
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=90.30 E-value=5.1 Score=31.98 Aligned_cols=77 Identities=14% Similarity=0.047 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
+++++|-.|++.|. ++..+++.|+ +|+.++.+++..+...+.+...+.++ .++..|+.+...... -+
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEA-LAVKADVLDKESLEQARQQILEDFG 86 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeE-EEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45778878876553 4455556677 89999988776665555554433345 677888765431110 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 87 ~id~li~~ag 96 (278)
T PRK08277 87 PCDILINGAG 96 (278)
T ss_pred CCCEEEECCC
Confidence 6899987643
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=90.22 E-value=1.4 Score=36.74 Aligned_cols=96 Identities=19% Similarity=0.186 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeC---CHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeE
Q psy8370 79 DPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQ---SSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 79 ~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~---s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
..++.+||-+|+| .|.++..+++. |. +|++++. ++.-.+.+++. +.........+..+ .... +.+|+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~----Ga~~v~~~~~~~~~-~~~~--~~~d~ 241 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEEL----GATYVNSSKTPVAE-VKLV--GEFDL 241 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHc----CCEEecCCccchhh-hhhc--CCCCE
Confidence 3567899989886 34555555554 45 7999986 56655555432 21100111111111 0111 25898
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
|+-...- ...+....+.|+++|.+++...
T Consensus 242 vid~~g~--------~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 242 IIEATGV--------PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred EEECcCC--------HHHHHHHHHHccCCcEEEEEec
Confidence 8876431 1356778889999999987643
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.12 E-value=6 Score=31.12 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=47.6
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCcceEEEccccccCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD--CDKLDKCYNVGIQDFKPE--------DL 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~i~~~~~~d~~~~~~~--------~~ 147 (256)
.++++|-.|++.|. ++..++++|+ +|+.++.+++..+...+.+... +.++ .++.+|+.+.... ..
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREV-HGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeE-EEEECCCCCHHHHHHHHHHHHHH
Confidence 46788888876552 4555556676 8999998877666655555432 2345 6677787653210 00
Q ss_pred CCceeEEEechh
Q psy8370 148 NIKYDVIWIQWV 159 (256)
Q Consensus 148 ~~~~D~V~~~~~ 159 (256)
.+.+|+++.+..
T Consensus 86 ~g~id~li~~ag 97 (257)
T PRK09242 86 WDGLHILVNNAG 97 (257)
T ss_pred cCCCCEEEECCC
Confidence 136899887654
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=90.10 E-value=4.5 Score=33.41 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=55.9
Q ss_pred CCCCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEE
Q psy8370 77 KSDPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
....++.+||-.|+| .|..+..+++. |. ++++++.+++-.+.+++. +.. ..+ +..+. ... .+|++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~----Ga~--~vi--~~~~~--~~~--~~d~~ 227 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALAL----GAA--SAG--GAYDT--PPE--PLDAA 227 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHh----CCc--eec--ccccc--Ccc--cceEE
Confidence 356778899999975 33444555444 44 799999998877766553 211 111 11111 112 47876
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
+..... ...+....+.|+++|.+++...
T Consensus 228 i~~~~~--------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 228 ILFAPA--------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EECCCc--------HHHHHHHHHhhCCCcEEEEEec
Confidence 543221 1357778889999999988643
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.10 E-value=4.4 Score=31.58 Aligned_cols=76 Identities=9% Similarity=-0.018 Sum_probs=45.7
Q ss_pred CCCeEEEEcCCCCHhH----HHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGRIS----KYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~----~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
+++++|=.|++ |..+ ..++++|+ ++++++.++...+...+.+...+.++ .++..|+.+...... .
T Consensus 6 ~~~~vlItGa~-g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTGAA-RGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRA-HAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcE-EEEEccCCCHHHHHHHHHHHHHHc
Confidence 45778877754 4433 34445566 78888888776665555554433455 778888865432100 1
Q ss_pred CceeEEEechh
Q psy8370 149 IKYDVIWIQWV 159 (256)
Q Consensus 149 ~~~D~V~~~~~ 159 (256)
+.+|+|+.+..
T Consensus 83 ~~id~vi~~ag 93 (250)
T PRK12939 83 GGLDGLVNNAG 93 (250)
T ss_pred CCCCEEEECCC
Confidence 36899887643
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=89.93 E-value=5.4 Score=32.34 Aligned_cols=106 Identities=13% Similarity=0.002 Sum_probs=59.1
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCH--HHHHHHHHHHHhcCCCcceEEEccccccCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSS--KFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------L 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~ 147 (256)
.++++|-.|++.|. ++..|++.|+ +|+.++.+. ...+...+.....+.++ .++..|+.+..... .
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECGRKA-VLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcCCeE-EEEEccCCCHHHHHHHHHHHHHH
Confidence 45789988876553 5566666777 787776542 33333444333333345 66778876542110 0
Q ss_pred CCceeEEEechhh-------hccCHHHH-----------HHHHHHHhhhcCCCcEEEEE
Q psy8370 148 NIKYDVIWIQWVL-------MFILDEDI-----------IKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 148 ~~~~D~V~~~~~l-------~~~~~~~~-----------~~~l~~~~~~LkpgG~l~i~ 188 (256)
.+..|+++.+... ...+.+++ ..+++.+.+.++.+|.+++.
T Consensus 126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 184 (294)
T PRK07985 126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITT 184 (294)
T ss_pred hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEE
Confidence 1357888876432 12222222 23555666667778877765
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=89.78 E-value=7.6 Score=29.83 Aligned_cols=115 Identities=15% Similarity=0.139 Sum_probs=68.9
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCH----hHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGR----ISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGI 139 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~----~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~ 139 (256)
.+|+..+- .....+.+++..|+.|. ++...+++. ..+++.|-++++.+...++.+...+. +..+|+.++.
T Consensus 30 aEfISAlA----AG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 30 AEFISALA----AGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred HHHHHHHh----ccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 45565555 56667888999766442 333333332 23899999998888778877775542 2227777764
Q ss_pred -cccCCCCCCCceeEEEechhhhccCHHHHH-HHHHHHhhhcCCCcEEEEEecccC
Q psy8370 140 -QDFKPEDLNIKYDVIWIQWVLMFILDEDII-KFLNLCKQILNKNGIIIIKDNVAS 193 (256)
Q Consensus 140 -~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~-~~l~~~~~~LkpgG~l~i~~~~~~ 193 (256)
++..+.-. .+|+++...-. .+.. .+|+.+. +.|.|.+++..+...
T Consensus 106 ~e~~~~~~~--~iDF~vVDc~~-----~d~~~~vl~~~~--~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 106 PEEVMPGLK--GIDFVVVDCKR-----EDFAARVLRAAK--LSPRGAVVVCYNAFS 152 (218)
T ss_pred HHHHHhhcc--CCCEEEEeCCc-----hhHHHHHHHHhc--cCCCceEEEEecccc
Confidence 44443333 58988876432 2323 4554432 567788888755443
|
The function of this family is unknown. |
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.67 E-value=3.3 Score=34.30 Aligned_cols=77 Identities=13% Similarity=0.052 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.+++||=.|++.|. ++..++++|+ +|+.++-+++.++...+.+...+.++ .++..|+.+...... .+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~-~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEV-LVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcE-EEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 45788888876553 5555666777 79999999887776666665544445 566777765421110 14
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 84 ~iD~lVnnAG 93 (330)
T PRK06139 84 RIDVWVNNVG 93 (330)
T ss_pred CCCEEEECCC
Confidence 6899988754
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.63 E-value=3.3 Score=33.86 Aligned_cols=90 Identities=12% Similarity=0.019 Sum_probs=51.0
Q ss_pred CCeEEEEcCCC--CHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 82 KTRVLDVGAGI--GRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 82 ~~~vLDiG~G~--G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
..+|.=||+|. +.++..+...+. .+|+++|.+++..+.+++ .+. . .....+..+. .. ..|+|+...
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~-~-~~~~~~~~~~---~~--~aDvViiav 74 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGL-G-DRVTTSAAEA---VK--GADLVILCV 74 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCC-C-ceecCCHHHH---hc--CCCEEEECC
Confidence 35788899885 234455555554 379999999887665543 111 1 1111122111 12 478888764
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
-. .....+++.+...+++++.++.
T Consensus 75 p~-----~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 75 PV-----GASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred CH-----HHHHHHHHHHHhhCCCCCEEEe
Confidence 32 2334566677777788775554
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.36 E-value=5.1 Score=31.70 Aligned_cols=74 Identities=8% Similarity=0.071 Sum_probs=44.8
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|-.|++.| .++..+++.|+ +|+.++.++...+...+.. +.++ .++.+|+.+...... .+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---GERA-RFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCee-EEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4568888886554 25555666677 8999998876544443332 2345 677788765432100 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+++.+..
T Consensus 80 ~id~lv~~ag 89 (261)
T PRK08265 80 RVDILVNLAC 89 (261)
T ss_pred CCCEEEECCC
Confidence 6798887643
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=89.34 E-value=1.3 Score=36.53 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=55.9
Q ss_pred CCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcc---ccccCCCCCCCceeEEE
Q psy8370 81 GKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG---IQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 81 ~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d---~~~~~~~~~~~~~D~V~ 155 (256)
++.+||-.|+|. |..+..++.. |...+++++.++...+.+++. . .. .++..+ +....... +.+|+++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g-~~----~vi~~~~~~~~~~~~~~--~~vd~vl 236 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-G-AD----ETVNLARDPLAAYAADK--GDFDVVF 236 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-C-CC----EEEcCCchhhhhhhccC--CCccEEE
Confidence 678898888764 5566666554 444789999988877755542 1 11 222111 11221111 2589998
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
..... ...++.+.+.|+++|.++..
T Consensus 237 d~~g~--------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 237 EASGA--------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred ECCCC--------HHHHHHHHHHHhcCCEEEEE
Confidence 75321 13566778999999999875
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=89.19 E-value=6.1 Score=32.18 Aligned_cols=87 Identities=15% Similarity=0.199 Sum_probs=50.2
Q ss_pred eEEEEcCCC--CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhh
Q psy8370 84 RVLDVGAGI--GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 161 (256)
Q Consensus 84 ~vLDiG~G~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~ 161 (256)
+|-=||+|. +.++..+++.+. +|++.|.+++..+.+.+. + . . ...+..+...... ..|+|++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~----g--~-~-~~~s~~~~~~~~~--~~dvIi~~---- 66 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED----R--T-T-GVANLRELSQRLS--APRVVWVM---- 66 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc----C--C-c-ccCCHHHHHhhcC--CCCEEEEE----
Confidence 456678774 235555656666 899999998876655532 1 1 1 1123222221112 46888876
Q ss_pred ccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 162 FILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 162 ~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
+++.....+++.+...|++|-.++
T Consensus 67 -vp~~~~~~v~~~l~~~l~~g~ivi 90 (298)
T TIGR00872 67 -VPHGIVDAVLEELAPTLEKGDIVI 90 (298)
T ss_pred -cCchHHHHHHHHHHhhCCCCCEEE
Confidence 333344567788888888875443
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.97 E-value=1.5 Score=35.24 Aligned_cols=98 Identities=18% Similarity=0.092 Sum_probs=55.2
Q ss_pred CCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE-ccccc-cCCCCCCCceeEE
Q psy8370 79 DPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN-VGIQD-FKPEDLNIKYDVI 154 (256)
Q Consensus 79 ~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~-~d~~~-~~~~~~~~~~D~V 154 (256)
..++.+||-+|+| .|..+..+++. |...|+++|.++.-.+.+++. +.. .++. .+..+ .........+|+|
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~--~~i~~~~~~~~~~~~~~~~g~d~v 191 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GAT--ALAEPEVLAERQGGLQNGRGVDVA 191 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCc--EecCchhhHHHHHHHhCCCCCCEE
Confidence 4467899988875 33444444443 554589999988877766553 110 1111 11100 0000011248988
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
+-... . ...++.+.+.++++|.+++.-.
T Consensus 192 id~~G------~--~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 192 LEFSG------A--TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred EECCC------C--hHHHHHHHHHhcCCCEEEEecc
Confidence 86432 0 2356677889999999998643
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.94 E-value=0.68 Score=37.44 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=35.4
Q ss_pred eEEEccccccCCCCCCCceeEEEec--hhh--h------ccCH----HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 133 KCYNVGIQDFKPEDLNIKYDVIWIQ--WVL--M------FILD----EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 133 ~~~~~d~~~~~~~~~~~~~D~V~~~--~~l--~------~~~~----~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.++++|..+....-..+++|+|+++ +.. . .... +-+...+.++.++|||||.+++.
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 6777887765321112379999985 211 0 0000 22357889999999999999985
|
|
| >KOG1253|consensus | Back alignment and domain information |
|---|
Probab=88.74 E-value=0.24 Score=42.41 Aligned_cols=104 Identities=12% Similarity=0.082 Sum_probs=72.7
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCC--CCCCCceeEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKP--EDLNIKYDVI 154 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~--~~~~~~~D~V 154 (256)
.++-+|||.=|++|.-++..+... ..+|++.|.++..++..+.+.+..+ .++.+....|+...-. ......||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 456789999999998888776653 4489999999999999999887654 2222555666543321 1112378988
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
-..-. .....+|..+.+.++.||.+.++.
T Consensus 188 DLDPy------Gs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 188 DLDPY------GSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ecCCC------CCccHHHHHHHHHhhcCCEEEEEe
Confidence 65421 222357888888899999999973
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=88.67 E-value=3.6 Score=32.75 Aligned_cols=76 Identities=14% Similarity=0.048 Sum_probs=43.2
Q ss_pred HHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHH
Q psy8370 96 SKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNL 174 (256)
Q Consensus 96 ~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~ 174 (256)
+..|.+.++. +|+|+|.++..++.+.+. .+..-...+.... . .+|+|+... |......++++
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~------g~~~~~~~~~~~~----~--~~Dlvvlav-----P~~~~~~~l~~ 64 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALEL------GIIDEASTDIEAV----E--DADLVVLAV-----PVSAIEDVLEE 64 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHT------TSSSEEESHHHHG----G--CCSEEEE-S------HHHHHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHC------CCeeeccCCHhHh----c--CCCEEEEcC-----CHHHHHHHHHH
Confidence 4566666743 999999999988877643 1212222221111 1 479998763 33445667777
Q ss_pred HhhhcCCCcEEEEE
Q psy8370 175 CKQILNKNGIIIIK 188 (256)
Q Consensus 175 ~~~~LkpgG~l~i~ 188 (256)
+...+++|+.+.=.
T Consensus 65 ~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 65 IAPYLKPGAIVTDV 78 (258)
T ss_dssp HHCGS-TTSEEEE-
T ss_pred hhhhcCCCcEEEEe
Confidence 77777777655543
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.62 E-value=7.7 Score=30.11 Aligned_cols=107 Identities=19% Similarity=0.129 Sum_probs=56.3
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCC-HHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQS-SKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
+++++|=.|++.|. ++..++++|+ +++.+.-+ +...+...+.....+.++ .++..|+.+...... .
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAGGRA-IAVQADVADAAAVTRLFDAAETAF 81 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcCCeE-EEEECCCCCHHHHHHHHHHHHHHc
Confidence 45678888875442 4455555676 56655433 333333333333333455 677778765421100 1
Q ss_pred CceeEEEechhhh------ccCHHHH-----------HHHHHHHhhhcCCCcEEEEEe
Q psy8370 149 IKYDVIWIQWVLM------FILDEDI-----------IKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~l~------~~~~~~~-----------~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+..|+++.+.... ..+.++. ..+++.+.+.++++|.++...
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 139 (245)
T PRK12937 82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLS 139 (245)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEe
Confidence 3578888764321 1222222 234556666777778777763
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.58 E-value=5.1 Score=31.71 Aligned_cols=76 Identities=11% Similarity=0.102 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
+++++|=.|++.| .++..++.+|+ +|++++.++...+...+.+...+.++ .++..|+.+...... -+
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRA-HVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcE-EEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678888886544 24455556677 89999998876665555554433455 677788766532110 13
Q ss_pred ceeEEEech
Q psy8370 150 KYDVIWIQW 158 (256)
Q Consensus 150 ~~D~V~~~~ 158 (256)
.+|+|+.+.
T Consensus 87 ~id~vi~~A 95 (263)
T PRK07814 87 RLDIVVNNV 95 (263)
T ss_pred CCCEEEECC
Confidence 689998764
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=88.52 E-value=15 Score=31.48 Aligned_cols=125 Identities=19% Similarity=0.204 Sum_probs=65.7
Q ss_pred CCCCCCeEEEEcCC-CCHh-HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAG-IGRI-SKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G-~G~~-~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
..-.+.+||=||.| .|.+ +.+|+..|...++.+--.. +.|++.....+ .....+.++...-. .+|+|+
T Consensus 174 ~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~---erA~~La~~~~-----~~~~~l~el~~~l~--~~DvVi 243 (414)
T COG0373 174 GSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTL---ERAEELAKKLG-----AEAVALEELLEALA--EADVVI 243 (414)
T ss_pred cccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCH---HHHHHHHHHhC-----CeeecHHHHHHhhh--hCCEEE
Confidence 33478899999999 6654 4566677777787775553 33443333322 12223333333333 689999
Q ss_pred echh-hhcc-CHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-cccCCCCceeeCHHHHHHHHHh
Q psy8370 156 IQWV-LMFI-LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-EYDDEDSSVVRSLPQFCLLFSK 219 (256)
Q Consensus 156 ~~~~-l~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 219 (256)
++-. -+++ +.... .+.+++.-.+++.|..-+.... ........+.++.+++....+.
T Consensus 244 ssTsa~~~ii~~~~v-------e~a~~~r~~~livDiavPRdie~~v~~l~~v~l~~iDDL~~iv~~ 303 (414)
T COG0373 244 SSTSAPHPIITREMV-------ERALKIRKRLLIVDIAVPRDVEPEVGELPNVFLYTIDDLEEIVEE 303 (414)
T ss_pred EecCCCccccCHHHH-------HHHHhcccCeEEEEecCCCCCCccccCcCCeEEEehhhHHHHHHH
Confidence 8743 3433 22322 2233222115555544433322 2333445566777777665443
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.51 E-value=8.1 Score=30.10 Aligned_cols=106 Identities=8% Similarity=0.012 Sum_probs=56.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCH-HHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSS-KFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LN 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~-~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~ 148 (256)
.++++|-.|++.|. ++..++++|+ +|+++.-+. ...+.....+...+.++ .++..|+.+..... ..
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRA-SAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCce-EEEEcCCCCHHHHHHHHHHHHHhC
Confidence 35688888864442 4444555666 788876653 23333333333333345 66777876543210 01
Q ss_pred CceeEEEechhhhc-----------cCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 149 IKYDVIWIQWVLMF-----------ILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 149 ~~~D~V~~~~~l~~-----------~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+.+|+|+.+..... .+-.....+++.+.+.++.+|.+++.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 25788776543211 01112345777777777666776665
|
|
| >PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2 | Back alignment and domain information |
|---|
Probab=88.30 E-value=3 Score=27.56 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=46.8
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCC----------ccccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK----------NEYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
.+++-|.+.++..+.+..+....+ |.++++-....... +..+.....+...++++.+.+.++||++.+
T Consensus 2 mDvLIHYp~~d~~~~l~~La~~t~--~~~ifTfAP~T~~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~g~~~~r 79 (97)
T PF07109_consen 2 MDVLIHYPAEDAAQMLAHLASRTR--GSLIFTFAPRTPLLALMHAIGKLFPRPDRSPRIYPHREEDLRRALAAAGWRIGR 79 (97)
T ss_pred cceEeccCHHHHHHHHHHHHHhcc--CcEEEEECCCCHHHHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHhCCCeeee
Confidence 456667777888889988887644 56666532222110 112222334557899999999999999987
Q ss_pred eeee
Q psy8370 227 SEKV 230 (256)
Q Consensus 227 ~~~~ 230 (256)
.+..
T Consensus 80 ~~ri 83 (97)
T PF07109_consen 80 TERI 83 (97)
T ss_pred cccc
Confidence 6644
|
1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=88.26 E-value=1.7 Score=36.63 Aligned_cols=46 Identities=13% Similarity=0.081 Sum_probs=35.6
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHH
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEI 124 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~ 124 (256)
++.++.+||-|.+|....... +..++++|++||+|+.-....+-+.
T Consensus 32 ~i~~~d~vl~ItSaG~N~L~y-L~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNALDY-LLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCCCCeEEEEccCCchHHHH-HhcCCceEEEEeCCHHHHHHHHHHH
Confidence 578899999998776666665 4677789999999998766655444
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=88.08 E-value=9.5 Score=30.94 Aligned_cols=106 Identities=14% Similarity=-0.039 Sum_probs=58.2
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHH--HHHHHHHHHHhcCCCcceEEEccccccCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSK--FIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------L 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~ 147 (256)
.++++|=.|++.|. ++..+++.|+ +|+.+..+.. ..+...+.+...+.++ .++.+|+.+..... .
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGRKA-VALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCCeE-EEEecCCCCHHHHHHHHHHHHHH
Confidence 35688888865552 4555556676 6776665432 2233333333333345 66778876542110 0
Q ss_pred CCceeEEEechhhh-------ccCHHH-----------HHHHHHHHhhhcCCCcEEEEE
Q psy8370 148 NIKYDVIWIQWVLM-------FILDED-----------IIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 148 ~~~~D~V~~~~~l~-------~~~~~~-----------~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.+..|+++.+.... .++.++ ...+++.+.+.++++|.++..
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 13689998775432 112222 223556667777788887775
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.06 E-value=4 Score=34.02 Aligned_cols=98 Identities=14% Similarity=0.069 Sum_probs=58.8
Q ss_pred CCCCCCeEEEEcC--CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc----cccccCCCCCCCce
Q psy8370 78 SDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV----GIQDFKPEDLNIKY 151 (256)
Q Consensus 78 ~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~----d~~~~~~~~~~~~~ 151 (256)
...++.+||=.|+ |.|..+..+++....++++++.++.-.+.+++.+.. . .++.. ++.+.......+.+
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa---~--~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF---D--EAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC---C--EEEECCCcccHHHHHHHHCCCCc
Confidence 4577889998987 367777777665333799999888776666533221 1 22211 11111000001258
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|+|+.... ...+..+.+.|+++|.+++.-
T Consensus 230 D~v~d~vG---------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 230 DIYFDNVG---------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EEEEECCC---------HHHHHHHHHHhccCCEEEEEC
Confidence 99886532 135567788999999998753
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.99 E-value=3.9 Score=37.58 Aligned_cols=106 Identities=19% Similarity=0.121 Sum_probs=61.4
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.+++||-.|++.| .++..+++.|+ +|+++|.++...+.+...+... ..+ .++..|+.+...... .+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~-~~v-~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP-DRA-LGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc-CcE-EEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4578888876444 24444555676 8999999987766655544332 244 677778765421100 13
Q ss_pred ceeEEEechhhhc------cCHHH-----------HHHHHHHHhhhcCC---CcEEEEEe
Q psy8370 150 KYDVIWIQWVLMF------ILDED-----------IIKFLNLCKQILNK---NGIIIIKD 189 (256)
Q Consensus 150 ~~D~V~~~~~l~~------~~~~~-----------~~~~l~~~~~~Lkp---gG~l~i~~ 189 (256)
.+|+|+.+..... .+.+. ...+++.+.+.+++ +|.+++..
T Consensus 498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 6899987754221 11111 23456666777765 57777753
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=87.89 E-value=3.5 Score=35.31 Aligned_cols=87 Identities=11% Similarity=0.009 Sum_probs=52.4
Q ss_pred CCCCeEEEEcCCC-CHhHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGI-GRISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.++.+|+-+|+|. |......+. .|. +|+++|.++.-.+.|+.. + . .. .+..+.. . .+|+|+..
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~----G--~-~~--~~~~e~v---~--~aDVVI~a 264 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAME----G--Y-EV--MTMEEAV---K--EGDIFVTT 264 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhc----C--C-EE--ccHHHHH---c--CCCEEEEC
Confidence 5688999999995 433333333 355 899999998766655432 2 1 11 1222211 2 47999875
Q ss_pred hhhhccCHHHHHHHHHH-HhhhcCCCcEEEEEe
Q psy8370 158 WVLMFILDEDIIKFLNL-CKQILNKNGIIIIKD 189 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~-~~~~LkpgG~l~i~~ 189 (256)
..- ...+.. ..+.+++||.++..-
T Consensus 265 tG~--------~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 265 TGN--------KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CCC--------HHHHHHHHHhcCCCCcEEEEeC
Confidence 321 124443 478899999998763
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.80 E-value=7.4 Score=31.53 Aligned_cols=77 Identities=17% Similarity=0.139 Sum_probs=46.2
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
.++++|-.|++.|. ++..+++.|+ +|+.++.+++.++...+.+.. +..+ ..+..|+.+..... ..+
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~-~~~~-~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG-DDRV-LTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC-CCcE-EEEEecCCCHHHHHHHHHHHHHHcC
Confidence 46788888876652 5555656676 899999988766655444432 1233 34457776542110 013
Q ss_pred ceeEEEechhh
Q psy8370 150 KYDVIWIQWVL 160 (256)
Q Consensus 150 ~~D~V~~~~~l 160 (256)
.+|+++.+...
T Consensus 85 ~id~vI~nAG~ 95 (296)
T PRK05872 85 GIDVVVANAGI 95 (296)
T ss_pred CCCEEEECCCc
Confidence 68999987543
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=87.54 E-value=11 Score=30.85 Aligned_cols=98 Identities=16% Similarity=0.074 Sum_probs=58.4
Q ss_pred CCCCCCCeEEEEcC--CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc----cccccCCCCCCCc
Q psy8370 77 KSDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV----GIQDFKPEDLNIK 150 (256)
Q Consensus 77 ~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~----d~~~~~~~~~~~~ 150 (256)
....++.+||=.|+ |.|..+..+++....++++++.+++-.+.+++. +.. .++.. +..+.......+.
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~l----Ga~--~vi~~~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKL----GFD--VAFNYKTVKSLEETLKKASPDG 207 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC--EEEeccccccHHHHHHHhCCCC
Confidence 35677889998884 467777777665433899999888877766542 211 22211 1111100001125
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+|+.... . ..+....+.|+++|.++...
T Consensus 208 vdvv~d~~G------~---~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 208 YDCYFDNVG------G---EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred eEEEEECCC------H---HHHHHHHHHhCcCcEEEEec
Confidence 899886432 1 23466788999999999753
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.26 E-value=8.9 Score=31.08 Aligned_cols=95 Identities=16% Similarity=0.237 Sum_probs=56.6
Q ss_pred CeEEEEcCCC--CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC------CCc---------ceE-EEccccccCC
Q psy8370 83 TRVLDVGAGI--GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC------DKL---------DKC-YNVGIQDFKP 144 (256)
Q Consensus 83 ~~vLDiG~G~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~i---------~~~-~~~d~~~~~~ 144 (256)
.+|--||+|+ +..+..++..|+ +|+.+|.+++.++.+.+++...- ..+ ..+ ...|....
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~-- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF-- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh--
Confidence 4788899984 345555666677 89999999999988776643210 001 000 12222111
Q ss_pred CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhc-CCCcEEEE
Q psy8370 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQIL-NKNGIIII 187 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG~l~i 187 (256)
...|+|+-. +.+.+ +-...++..+-+.+ +|+..+.-
T Consensus 83 ----~~~d~ViEa-v~E~~--~~K~~l~~~l~~~~~~~~~il~s 119 (286)
T PRK07819 83 ----ADRQLVIEA-VVEDE--AVKTEIFAELDKVVTDPDAVLAS 119 (286)
T ss_pred ----CCCCEEEEe-cccCH--HHHHHHHHHHHHhhCCCCcEEEE
Confidence 146888765 22333 44456788888888 66655554
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.21 E-value=5.5 Score=32.16 Aligned_cols=89 Identities=19% Similarity=0.087 Sum_probs=51.0
Q ss_pred CCeEEEEcCC--CCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEE-ccccccCCCCCCCceeEEEec
Q psy8370 82 KTRVLDVGAG--IGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYN-VGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 82 ~~~vLDiG~G--~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~-~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..+|+=+|.| -|.+++.+.+.|.. .+++.|.+....+.+.+. .+ .... .+.... .. ...|+|+.+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l------gv-~d~~~~~~~~~--~~--~~aD~Viva 71 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL------GV-IDELTVAGLAE--AA--AEADLVIVA 71 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc------Cc-ccccccchhhh--hc--ccCCEEEEe
Confidence 3567777766 45566767666765 578888888766665532 11 1111 111011 11 247988876
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
-- -.....+++++...|++|..+.
T Consensus 72 vP-----i~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 72 VP-----IEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred cc-----HHHHHHHHHHhcccCCCCCEEE
Confidence 32 2344567777777777765544
|
|
| >COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=87.18 E-value=1.8 Score=34.80 Aligned_cols=75 Identities=7% Similarity=0.052 Sum_probs=61.0
Q ss_pred EeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 110 LEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 110 vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
....++..|.++.+.. ++ .++.+|+.++......+..|.++..++-.++++.++..++.++.+-+.+|..+++..
T Consensus 292 ~yl~~~~YEsir~n~~----RV-~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRt 366 (414)
T COG5379 292 AYLDEGVYESIRQNLR----RV-AIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRT 366 (414)
T ss_pred hhhchhhHHHHHhhhh----he-eeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEec
Confidence 4556666677766654 46 789999988876433458999999999999999999999999999999999999853
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=87.17 E-value=3.3 Score=34.26 Aligned_cols=104 Identities=15% Similarity=0.008 Sum_probs=61.6
Q ss_pred CCCCCCCeEEEEcC--CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC-CCCCCceeE
Q psy8370 77 KSDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP-EDLNIKYDV 153 (256)
Q Consensus 77 ~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~-~~~~~~~D~ 153 (256)
....++.+||-.|+ |.|.++..+++.....++++--+++-.+.+++.-.+ .+..+...|+.+... ......+|+
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd---~vi~y~~~~~~~~v~~~t~g~gvDv 214 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGAD---HVINYREEDFVEQVRELTGGKGVDV 214 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCC---EEEcCCcccHHHHHHHHcCCCCceE
Confidence 35677899999985 456788888776432666766666555544443221 121333333332221 111125999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEeccc
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 192 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 192 (256)
|+....- ..+....+.|+++|.++......
T Consensus 215 v~D~vG~---------~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 215 VLDTVGG---------DTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred EEECCCH---------HHHHHHHHHhccCCEEEEEecCC
Confidence 9987442 35555778889999999865443
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.90 E-value=11 Score=29.69 Aligned_cols=105 Identities=16% Similarity=0.105 Sum_probs=55.1
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCC----HHHHHHHHHHHHhcCCCcceEEEccccccCCCCC------
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQS----SKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL------ 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s----~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~------ 147 (256)
.++++|=.|++.| .++..++..|+ +++.++.+ ....+...+.+...+.++ .++..|+.+......
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l~~~G~-~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQGA-KAVAIHYNSAASKADAEETVAAVKAAGAKA-VAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-cEEEEecCCccchHHHHHHHHHHHHhCCcE-EEEecCcCCHHHHHHHHHHHH
Confidence 3568888886655 24455555666 55555432 222333333333223345 677888765432110
Q ss_pred --CCceeEEEechhh------hccCHHHH-----------HHHHHHHhhhcCCCcEEEE
Q psy8370 148 --NIKYDVIWIQWVL------MFILDEDI-----------IKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 148 --~~~~D~V~~~~~l------~~~~~~~~-----------~~~l~~~~~~LkpgG~l~i 187 (256)
.+.+|+++.+... ...+.++. ..+++.+.+.++++|.+++
T Consensus 85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~ 143 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEE
Confidence 1368999877543 22222222 2345666777777776654
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=86.62 E-value=7.3 Score=32.53 Aligned_cols=99 Identities=14% Similarity=0.021 Sum_probs=56.8
Q ss_pred CCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE---ccccc-cCCCCCCCc
Q psy8370 77 KSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN---VGIQD-FKPEDLNIK 150 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~---~d~~~-~~~~~~~~~ 150 (256)
....++.+||-.|+|. |..+..+++. |...|+++|.++.-.+.+++. +.. .++. .+..+ .........
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----Ga~--~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----GAT--HTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc--eEEcCCCcCHHHHHHHHhCCCC
Confidence 3456788999888752 4455555544 444699999998877777542 110 2221 11111 000011124
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+|+-...- ...++...+.++++|.+++..
T Consensus 246 ~d~vid~~g~--------~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 246 ADVVIDAVGR--------PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCEEEECCCC--------HHHHHHHHHHhccCCEEEEEC
Confidence 8988864321 134566778899999998764
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.61 E-value=3.4 Score=32.80 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=52.7
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
...++....|+|+..|.++..|.+++- .|++||..+- +... -+. ..+ +....|-..+.|... ..|-.+|.
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~m----a~sL-~dt-g~v-~h~r~DGfk~~P~r~--~idWmVCD 277 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPM----AQSL-MDT-GQV-THLREDGFKFRPTRS--NIDWMVCD 277 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcce-EEEEeccchh----hhhh-hcc-cce-eeeeccCcccccCCC--CCceEEee
Confidence 357789999999999999999998887 8999998653 2222 222 355 666667666666444 68988887
Q ss_pred hh
Q psy8370 158 WV 159 (256)
Q Consensus 158 ~~ 159 (256)
.+
T Consensus 278 mV 279 (358)
T COG2933 278 MV 279 (358)
T ss_pred hh
Confidence 66
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.52 E-value=14 Score=29.08 Aligned_cols=76 Identities=13% Similarity=0.125 Sum_probs=44.6
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
.++++|-.|++.|. ++..|+++|+ +|+.++.++.. +...+.+...+.++ .++..|+.+..... ..+
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~-~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELV-HEVAAELRAAGGEA-LALTADLETYAGAQAAMAAAVEAFG 83 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHH-HHHHHHHHhcCCeE-EEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 45678888876552 5555666777 79999987643 22333333333345 56777876642110 013
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 84 ~id~lv~nAg 93 (260)
T PRK12823 84 RIDVLINNVG 93 (260)
T ss_pred CCeEEEECCc
Confidence 6899887653
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.42 E-value=13 Score=29.60 Aligned_cols=77 Identities=17% Similarity=0.037 Sum_probs=44.7
Q ss_pred CCCeEEEEcCCC--C---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------C
Q psy8370 81 GKTRVLDVGAGI--G---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------L 147 (256)
Q Consensus 81 ~~~~vLDiG~G~--G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~ 147 (256)
+++++|-.|++. | ..+..|++.|+ +|+.++.++...+..++.....+ .. ..+..|+.+..... .
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g-~~-~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLG-SD-FVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcC-Cc-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 457888888864 4 36666767777 78888776543333333322222 22 35677876543211 0
Q ss_pred CCceeEEEechhh
Q psy8370 148 NIKYDVIWIQWVL 160 (256)
Q Consensus 148 ~~~~D~V~~~~~l 160 (256)
.+.+|+++.+...
T Consensus 83 ~g~iD~lVnnAG~ 95 (271)
T PRK06505 83 WGKLDFVVHAIGF 95 (271)
T ss_pred hCCCCEEEECCcc
Confidence 2478999887543
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=86.25 E-value=1.8 Score=36.32 Aligned_cols=98 Identities=12% Similarity=0.039 Sum_probs=56.6
Q ss_pred CCCCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE---ccccc-cCCCCCCCc
Q psy8370 77 KSDPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN---VGIQD-FKPEDLNIK 150 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~---~d~~~-~~~~~~~~~ 150 (256)
....++.+||=.|+| .|..+..++.. |...|+++|.++.-.+.+++. +.. .++. .+..+ ...... +.
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~--~~i~~~~~~~~~~i~~~~~-~g 259 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GAT--ATVNAGDPNAVEQVRELTG-GG 259 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCc--eEeCCCchhHHHHHHHHhC-CC
Confidence 345677888888875 24445555443 554699999999877777542 111 1221 11111 100011 25
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+|+-...- ...++...+.++++|.+++..
T Consensus 260 ~d~vid~~G~--------~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 260 VDYAFEMAGS--------VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCEEEECCCC--------hHHHHHHHHHHhcCCEEEEEc
Confidence 8988864220 135666778899999998764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.12 E-value=15 Score=29.20 Aligned_cols=76 Identities=13% Similarity=0.076 Sum_probs=43.5
Q ss_pred CCCeEEEEcCCC--C---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------C
Q psy8370 81 GKTRVLDVGAGI--G---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------L 147 (256)
Q Consensus 81 ~~~~vLDiG~G~--G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~ 147 (256)
.++++|=.|++. | ..+..+++.|+ +|+.++.++...+.+.+. ....... .++..|+.+..... .
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~-~~~~~~~-~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEF-AAQLGSD-IVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHH-HhccCCc-eEeecCCCCHHHHHHHHHHHHhh
Confidence 456788888864 3 25666777777 788887764332333322 2211233 46677876542111 0
Q ss_pred CCceeEEEechh
Q psy8370 148 NIKYDVIWIQWV 159 (256)
Q Consensus 148 ~~~~D~V~~~~~ 159 (256)
.+.+|+++.+..
T Consensus 82 ~g~iD~linnAg 93 (262)
T PRK07984 82 WPKFDGFVHSIG 93 (262)
T ss_pred cCCCCEEEECCc
Confidence 246899998764
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=86.01 E-value=3.4 Score=29.23 Aligned_cols=75 Identities=20% Similarity=0.181 Sum_probs=45.8
Q ss_pred CCCCCeEEEEcCCCC--HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAGIG--RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G--~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
.-++.++|=||+|.- ..+..+...|+.+++.+.-+.+-.+...+.+.. . .+...++.+...... .+|+|++
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~--~---~~~~~~~~~~~~~~~--~~DivI~ 81 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG--V---NIEAIPLEDLEEALQ--EADIVIN 81 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG--C---SEEEEEGGGHCHHHH--TESEEEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc--c---ccceeeHHHHHHHHh--hCCeEEE
Confidence 456899999999743 244555566887899999887655544444421 1 233444444442223 6999998
Q ss_pred chhh
Q psy8370 157 QWVL 160 (256)
Q Consensus 157 ~~~l 160 (256)
.-..
T Consensus 82 aT~~ 85 (135)
T PF01488_consen 82 ATPS 85 (135)
T ss_dssp -SST
T ss_pred ecCC
Confidence 7543
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >KOG2912|consensus | Back alignment and domain information |
|---|
Probab=85.92 E-value=2.7 Score=34.28 Aligned_cols=91 Identities=20% Similarity=0.190 Sum_probs=52.5
Q ss_pred hHHHHHHHHhccCCCCCCCe--EEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccc
Q psy8370 65 SNQFLSSLYCQKKSDPGKTR--VLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGI 139 (256)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~--vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~ 139 (256)
..+++..++... +..++.. -+|||.|+-..-..+-++... ...++|+++...+.|.++....+ ..+ .+++...
T Consensus 85 YihwI~DLLss~-q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~i-kvV~~~~ 162 (419)
T KOG2912|consen 85 YIHWIEDLLSSQ-QSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLI-KVVKVEP 162 (419)
T ss_pred hHHHHHHHhhcc-cCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccce-eeEEecc
Confidence 346777777222 2222222 479988876554444333222 67889999999999999887654 334 4444433
Q ss_pred cccCC-----CCCCCceeEEEec
Q psy8370 140 QDFKP-----EDLNIKYDVIWIQ 157 (256)
Q Consensus 140 ~~~~~-----~~~~~~~D~V~~~ 157 (256)
..... ...+..||++.|+
T Consensus 163 ~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 163 QKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred hhhcchhhhccCccceeeEEecC
Confidence 22111 1111249999987
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=85.82 E-value=1.3 Score=37.26 Aligned_cols=99 Identities=10% Similarity=0.059 Sum_probs=50.8
Q ss_pred CCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 81 GKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 81 ~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
++.+|+=+|+| .|..+...+.. |. +|+++|.++.-.+.+...+.. .+ .....+..++...-. .+|+|+...
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~---~v-~~~~~~~~~l~~~l~--~aDvVI~a~ 238 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG---RI-HTRYSNAYEIEDAVK--RADLLIGAV 238 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc---ee-EeccCCHHHHHHHHc--cCCEEEEcc
Confidence 45779999887 44444444433 55 799999998765554443211 11 111111111111112 589999764
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
....-+.+ .-+-++..+.++|++.++-.
T Consensus 239 ~~~g~~~p--~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 239 LIPGAKAP--KLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred ccCCCCCC--cCcCHHHHhcCCCCCEEEEE
Confidence 22111000 01224455667999877753
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=85.80 E-value=2 Score=31.11 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=24.1
Q ss_pred EEcCCCC--HhHHHHHH--hcC-CeEEEEeCCHHHHHHHHHH
Q psy8370 87 DVGAGIG--RISKYLLA--KHF-DKIDLLEQSSKFIEQAKEE 123 (256)
Q Consensus 87 DiG~G~G--~~~~~l~~--~~~-~~v~~vD~s~~~~~~a~~~ 123 (256)
|||++.| .....++. .+. .+|+++|+++...+..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 55554432 222 3899999999999988888
|
; PDB: 2PY6_A. |
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.78 E-value=15 Score=29.15 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=42.1
Q ss_pred eEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCCcee
Q psy8370 84 RVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNIKYD 152 (256)
Q Consensus 84 ~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~~~D 152 (256)
++|=.|++.|. ++..+++.|+ +|+.++.+++..+...+.+...+.....+...|+.+..... ..+.+|
T Consensus 2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD 80 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 46666765442 4444555676 78888888776665555544333222144667775532110 013589
Q ss_pred EEEechh
Q psy8370 153 VIWIQWV 159 (256)
Q Consensus 153 ~V~~~~~ 159 (256)
+++.+..
T Consensus 81 ~lv~~ag 87 (272)
T PRK07832 81 VVMNIAG 87 (272)
T ss_pred EEEECCC
Confidence 9887653
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.65 E-value=8.2 Score=31.28 Aligned_cols=94 Identities=16% Similarity=0.180 Sum_probs=54.0
Q ss_pred CeEEEEcCCC-C-HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC---------CCcc---------eE-EEccccc
Q psy8370 83 TRVLDVGAGI-G-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC---------DKLD---------KC-YNVGIQD 141 (256)
Q Consensus 83 ~~vLDiG~G~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---------~~i~---------~~-~~~d~~~ 141 (256)
.+|.=||+|. | .++..++..|. +|+.+|.+++.++.+++...... ..+. .+ ...|...
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHHH
Confidence 4688889983 2 35555666676 89999999999887665433210 0000 00 1111110
Q ss_pred cCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 142 FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 142 ~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
.. ..|+|+.... ... +....+++++.+.++|+..++
T Consensus 83 ----~~--~aDlVieav~-e~~--~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 83 ----LS--DADFIVEAVP-EKL--DLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred ----hC--CCCEEEEcCc-CcH--HHHHHHHHHHHhhCCCCeEEE
Confidence 11 4688887531 111 234668888888888876554
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=85.63 E-value=3.2 Score=33.09 Aligned_cols=63 Identities=22% Similarity=0.384 Sum_probs=40.2
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccC
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKH------FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFK 143 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~------~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~ 143 (256)
+.++..++|+|||.|.++.+++... ...++.||-... ...+-....... ..+ .-+..|+.++.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~-R~K~D~~~~~~~~~~~~-~R~riDI~dl~ 86 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN-RHKADNKIRKDESEPKF-ERLRIDIKDLD 86 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc-cccchhhhhccCCCCce-EEEEEEeeccc
Confidence 4667799999999999999987654 237888997542 112223333222 234 55566776664
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=85.62 E-value=21 Score=31.55 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=61.9
Q ss_pred CCCeEEEEcCCCCHhHHHHHHh---cC--CeEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEccc-cccCCCCCCCce
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAK---HF--DKIDLLEQSSKFIEQAKEEILKDC---DKLDKCYNVGI-QDFKPEDLNIKY 151 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~---~~--~~v~~vD~s~~~~~~a~~~~~~~~---~~i~~~~~~d~-~~~~~~~~~~~~ 151 (256)
+...|.|.-||+|.+....... +. ..++|.+....+...+..++.-++ ... ....+|- ....... ...|
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~-~~~~~dtl~~~d~~~-~~~~ 294 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANF-NIINADTLTTKEWEN-ENGF 294 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcccc-CcccCCcCCCccccc-cccC
Confidence 4579999999999988764331 11 268999999999998888754322 122 2222222 2111111 1246
Q ss_pred eEEEechh---------------------h---hccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 152 DVIWIQWV---------------------L---MFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 152 D~V~~~~~---------------------l---~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+|+++-- . .+.+..+ ..++..+..+|++||...+.
T Consensus 295 D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 295 EVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKAD-LAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred CEEeecCCcccccccccccccccccchhcccCCCCCchhh-HHHHHHHHHhcCCCCeEEEE
Confidence 76664420 1 1122222 36888889999999976554
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.24 E-value=5.9 Score=33.85 Aligned_cols=108 Identities=23% Similarity=0.304 Sum_probs=68.7
Q ss_pred CCCCeEEEEcC-CCC------HhHHHHHHhcCC-eEEEEeCC-HHHHHHHHHHHHhcCCCcceEEEccccccCCC-----
Q psy8370 80 PGKTRVLDVGA-GIG------RISKYLLAKHFD-KIDLLEQS-SKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE----- 145 (256)
Q Consensus 80 ~~~~~vLDiG~-G~G------~~~~~l~~~~~~-~v~~vD~s-~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~----- 145 (256)
.++..||=+|- |+| -++.++..++.+ -+++.|.- |.+++..+...... .+ .++..+-..-|..
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~--~v-~~f~~~~~~~Pv~Iak~a 174 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQV--GV-PFFGSGTEKDPVEIAKAA 174 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHc--CC-ceecCCCCCCHHHHHHHH
Confidence 34567777775 555 355666555553 56778865 66677777665553 34 4554422221110
Q ss_pred ---CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 146 ---DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 146 ---~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.....+|+|+..-.-.+--++++-.-++++.+.++|.-.+++.+.
T Consensus 175 l~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDa 222 (451)
T COG0541 175 LEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDA 222 (451)
T ss_pred HHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 002468999998665444457777889999999999999999864
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.20 E-value=8.7 Score=31.42 Aligned_cols=97 Identities=8% Similarity=0.048 Sum_probs=55.4
Q ss_pred CeEEEEcCCC--CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHH--HH--hcCCCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 83 TRVLDVGAGI--GRISKYLLAKHFDKIDLLEQSSKFIEQAKEE--IL--KDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 83 ~~vLDiG~G~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~--~~--~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
.+|+=+|+|. |.++..|.+.|. .|+.++-+++.++..++. +. ..+ .. ......... +... +.+|+|+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~i~~~g-~~-~~~~~~~~~-~~~~--~~~D~viv 76 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQG-QA-SLYAIPAET-ADAA--EPIHRLLL 76 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeEEeeCC-cc-eeeccCCCC-cccc--cccCEEEE
Confidence 5788999983 456666766665 799999887655555432 11 001 00 000100000 1111 36999887
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
..=-++ ....++.+...+.++..++...+
T Consensus 77 ~vK~~~-----~~~al~~l~~~l~~~t~vv~lQN 105 (305)
T PRK05708 77 ACKAYD-----AEPAVASLAHRLAPGAELLLLQN 105 (305)
T ss_pred ECCHHh-----HHHHHHHHHhhCCCCCEEEEEeC
Confidence 633222 34678888999999987776543
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=84.99 E-value=14 Score=29.09 Aligned_cols=76 Identities=12% Similarity=0.070 Sum_probs=43.1
Q ss_pred CCeEEEEcCCCCH---hHHHHHHhcCCeEEEEe-CCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 82 KTRVLDVGAGIGR---ISKYLLAKHFDKIDLLE-QSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 82 ~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD-~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
++++|=.|++.|. ++..++++|+ +|+.+. .+....+...+.....+.++ .++..|+.+..... ..+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHGVRA-EIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCce-EEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3578888876552 4444555666 676664 44444555444444444455 77788876643110 013
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+++.+..
T Consensus 80 ~id~li~~ag 89 (256)
T PRK12743 80 RIDVLVNNAG 89 (256)
T ss_pred CCCEEEECCC
Confidence 6899987643
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.94 E-value=5.7 Score=31.19 Aligned_cols=77 Identities=13% Similarity=0.063 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|-.|++.|. ++..+++.|+ +|++++.+++..+...+.+...+.++ ..+..|+.+...... .+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKV-VPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeE-EEEEccCCCHHHHHHHHHHHHHHhC
Confidence 46788988886663 5566666677 89999998877776666655444345 667778765432100 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+++.+..
T Consensus 86 ~id~lv~~ag 95 (253)
T PRK05867 86 GIDIAVCNAG 95 (253)
T ss_pred CCCEEEECCC
Confidence 6899987644
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=84.90 E-value=6.5 Score=32.12 Aligned_cols=96 Identities=15% Similarity=0.055 Sum_probs=57.7
Q ss_pred CCCCCCCeEEEEcC--CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc---cccc-cCCCCCCCc
Q psy8370 77 KSDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV---GIQD-FKPEDLNIK 150 (256)
Q Consensus 77 ~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~---d~~~-~~~~~~~~~ 150 (256)
....++.+||=.|+ |.|..+..++.....++++++.+++-.+.+++. +.. .++.. ++.+ ...... +.
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~----Ga~--~vi~~~~~~~~~~v~~~~~-~g 211 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKEL----GFD--AVFNYKTVSLEEALKEAAP-DG 211 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC--EEEeCCCccHHHHHHHHCC-CC
Confidence 34567889988874 566677777665333799999888877777652 111 22221 1111 000011 25
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+|+|+.... ...++...+.|+++|.++..
T Consensus 212 vd~vld~~g---------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 212 IDCYFDNVG---------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred cEEEEECCC---------HHHHHHHHHhhccCCEEEEE
Confidence 898886432 13557788899999999865
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.66 E-value=9 Score=30.86 Aligned_cols=77 Identities=16% Similarity=0.063 Sum_probs=46.1
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCH---------HHHHHHHHHHHhcCCCcceEEEccccccCCCC--
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSS---------KFIEQAKEEILKDCDKLDKCYNVGIQDFKPED-- 146 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~---------~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~-- 146 (256)
+++++|-.|++.|. ++..+++.|+ +|+.++.+. ..++.+.+.+...+.++ .++..|+.+.....
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEA-VANGDDIADWDGAANL 82 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCCce-EEEeCCCCCHHHHHHH
Confidence 56788988887763 5555666777 788887654 33444444444333345 56777876542110
Q ss_pred ------CCCceeEEEechh
Q psy8370 147 ------LNIKYDVIWIQWV 159 (256)
Q Consensus 147 ------~~~~~D~V~~~~~ 159 (256)
..+..|+++.+..
T Consensus 83 ~~~~~~~~g~id~lv~nAG 101 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAG 101 (286)
T ss_pred HHHHHHhcCCCCEEEECCC
Confidence 0147899988754
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.64 E-value=7.3 Score=30.54 Aligned_cols=77 Identities=13% Similarity=0.032 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
.++++|=.|++.|. ++..++++|+ +|++++.++...+...+.....+.++ .++..|+.+..... ..+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRA-LAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCce-EEEecCCCCHHHHHHHHHHHHHHcC
Confidence 45778878875552 5555666777 89999998876666655555444455 77888876542210 013
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+|+.+..
T Consensus 82 ~~d~vi~~ag 91 (258)
T PRK07890 82 RVDALVNNAF 91 (258)
T ss_pred CccEEEECCc
Confidence 6899887754
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=84.56 E-value=8.5 Score=31.49 Aligned_cols=97 Identities=18% Similarity=0.088 Sum_probs=57.1
Q ss_pred CCCCCCCeEEEEcCC-CCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC-CCCCCCceeEE
Q psy8370 77 KSDPGKTRVLDVGAG-IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK-PEDLNIKYDVI 154 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~-~~~~~~~~D~V 154 (256)
....++.+||-.|+| .|..+..++.....++++++.+++..+.+++. . ...++...-.... .... .+|++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~-g-----~~~~~~~~~~~~~~~~~~--~~d~v 229 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKL-G-----ADEVVDSGAELDEQAAAG--GADVI 229 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-C-----CcEEeccCCcchHHhccC--CCCEE
Confidence 345677889988886 56666555555333899999998877766432 1 1012211110000 0112 58988
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+....- ...+..+.+.|+++|.++...
T Consensus 230 i~~~~~--------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 230 LVTVVS--------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EECCCc--------HHHHHHHHHhcccCCEEEEEC
Confidence 864220 135566788999999988753
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=84.38 E-value=11 Score=30.99 Aligned_cols=97 Identities=20% Similarity=0.195 Sum_probs=56.0
Q ss_pred CCCCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc----CCCCCCCc
Q psy8370 77 KSDPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF----KPEDLNIK 150 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~----~~~~~~~~ 150 (256)
....++.+||-+|+| .|..+..++.. |...+++++.+++..+.+++. + ...++..+-.+. .... +.
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g--~~~~~~~~~~~~~~~~~~~~--~~ 226 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----G--ATETVDPSREDPEAQKEDNP--YG 226 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----C--CeEEecCCCCCHHHHHHhcC--CC
Confidence 355677899999865 24455555544 443488899988877766432 1 101121111110 0111 25
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+++....- ...+..+.+.|+++|.++...
T Consensus 227 vd~v~~~~~~--------~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 227 FDVVIEATGV--------PKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CcEEEECCCC--------hHHHHHHHHHHhcCCEEEEEe
Confidence 8999865210 146667788899999998753
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=84.37 E-value=11 Score=30.00 Aligned_cols=95 Identities=17% Similarity=0.076 Sum_probs=54.8
Q ss_pred CCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEE
Q psy8370 77 KSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
....++.+||-.|+|. |..+..++.. |...+++++.+++-.+.+++.- ....+ .... ... ... ..+|+|
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g--~~~~~---~~~~-~~~-~~~--~~~d~v 163 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALG--PADPV---AADT-ADE-IGG--RGADVV 163 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcC--CCccc---cccc-hhh-hcC--CCCCEE
Confidence 3566788898888754 4555555544 4423999999888777655431 00111 1110 001 111 258988
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+....- ...+....+.|+++|.++..
T Consensus 164 l~~~~~--------~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 164 IEASGS--------PSALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEccCC--------hHHHHHHHHHhcCCcEEEEE
Confidence 864221 13556678889999999865
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=84.26 E-value=5.6 Score=32.41 Aligned_cols=87 Identities=17% Similarity=0.117 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCCC-HhHHH-HHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 81 GKTRVLDVGAGIG-RISKY-LLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 81 ~~~~vLDiG~G~G-~~~~~-l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.+.+|+=||+|.- ..... +...|. +|+++|.++...+.++. .+ . .+. +..++...-. .+|+|+...
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~----~G--~-~~~--~~~~l~~~l~--~aDiVI~t~ 218 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITE----MG--L-SPF--HLSELAEEVG--KIDIIFNTI 218 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cC--C-eee--cHHHHHHHhC--CCCEEEECC
Confidence 5789999998742 22222 223355 89999999775444432 12 1 222 1122211112 589999853
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
+.. .+-+...+.++|++.++-
T Consensus 219 -----p~~---~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 219 -----PAL---VLTKEVLSKMPPEALIID 239 (296)
T ss_pred -----Chh---hhhHHHHHcCCCCcEEEE
Confidence 211 133456677889887664
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=84.01 E-value=3.7 Score=33.86 Aligned_cols=98 Identities=20% Similarity=0.160 Sum_probs=54.5
Q ss_pred CCCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc---cccccCCCCCCCcee
Q psy8370 78 SDPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV---GIQDFKPEDLNIKYD 152 (256)
Q Consensus 78 ~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~---d~~~~~~~~~~~~~D 152 (256)
...++.+||=+|+| .|..+..+++. |...|++++.+++-.+.+++. + ...++.. +............+|
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----g--a~~~i~~~~~~~~~~~~~~~~~~~d 233 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----G--ADFVINSGQDDVQEIRELTSGAGAD 233 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----C--CCEEEcCCcchHHHHHHHhCCCCCC
Confidence 45668899988864 23344444443 553499999998877776543 1 1012211 111110000112589
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+.... . ...+....+.|+++|.+++..
T Consensus 234 ~vid~~g------~--~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 234 VAIECSG------N--TAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred EEEECCC------C--HHHHHHHHHHhhcCCEEEEEc
Confidence 9986432 0 134556678899999998753
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=83.75 E-value=12 Score=33.85 Aligned_cols=91 Identities=16% Similarity=0.129 Sum_probs=54.4
Q ss_pred CeEEEEcCCCCHhHHHHHH----hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC--CCCCceeEEEe
Q psy8370 83 TRVLDVGAGIGRISKYLLA----KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIWI 156 (256)
Q Consensus 83 ~~vLDiG~G~G~~~~~l~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~--~~~~~~D~V~~ 156 (256)
.+|+=+ |.|+.+..+++ .+. .++.+|.+++.++.+++. .. ..+.+|..+.... .+-...|++++
T Consensus 401 ~~vII~--G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~------g~-~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIV--GFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKY------GY-KVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CCEEEe--cCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhC------CC-eEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 455545 55555555443 344 899999999988877642 23 6788898775421 11235787776
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.. ++++....+-...+.+.|+..++..
T Consensus 471 ~~-----~d~~~n~~i~~~~r~~~p~~~IiaR 497 (601)
T PRK03659 471 TC-----NEPEDTMKIVELCQQHFPHLHILAR 497 (601)
T ss_pred Ee-----CCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 52 2222222333445567888888875
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.65 E-value=19 Score=28.49 Aligned_cols=105 Identities=8% Similarity=0.001 Sum_probs=55.9
Q ss_pred CCCeEEEEcCCC-CH----hHHHHHHhcCCeEEEEeCCH---HHHHHHHHHHHhcCCCcceEEEccccccCCCC------
Q psy8370 81 GKTRVLDVGAGI-GR----ISKYLLAKHFDKIDLLEQSS---KFIEQAKEEILKDCDKLDKCYNVGIQDFKPED------ 146 (256)
Q Consensus 81 ~~~~vLDiG~G~-G~----~~~~l~~~~~~~v~~vD~s~---~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~------ 146 (256)
.++++|-.|+++ +. .+..+++.|+ +|+.++.+. +.++...+... +.++ .++..|+.+.....
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~-~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLE--GQES-LLLPCDVTSDEEITACFETI 81 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcC--CCce-EEEecCCCCHHHHHHHHHHH
Confidence 457888899752 32 4555666676 787776542 22333322221 2344 56777876543211
Q ss_pred --CCCceeEEEechhhh----------ccCHHHHH-----------HHHHHHhhhcCCCcEEEEEe
Q psy8370 147 --LNIKYDVIWIQWVLM----------FILDEDII-----------KFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 147 --~~~~~D~V~~~~~l~----------~~~~~~~~-----------~~l~~~~~~LkpgG~l~i~~ 189 (256)
..+.+|+++.+..+. ..+.+++. .+.+.+.+.|+++|.++...
T Consensus 82 ~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~is 147 (257)
T PRK08594 82 KEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLT 147 (257)
T ss_pred HHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEc
Confidence 024789988764322 11222222 13355667777788777653
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.51 E-value=10 Score=30.47 Aligned_cols=84 Identities=24% Similarity=0.290 Sum_probs=47.3
Q ss_pred eEEEEcCCC--CHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhh
Q psy8370 84 RVLDVGAGI--GRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 160 (256)
Q Consensus 84 ~vLDiG~G~--G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l 160 (256)
+|.=||+|. |.++..+...+.. .|+++|.++...+.+.+ .+ +... ..+..+. . ..|+|+..-
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g--~~~~-~~~~~~~----~--~aD~Vilav-- 66 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LG--LVDE-IVSFEEL----K--KCDVIFLAI-- 66 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CC--CCcc-cCCHHHH----h--cCCEEEEeC--
Confidence 466677764 3455555555643 79999999887665532 11 1011 1122211 1 368888763
Q ss_pred hccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 161 MFILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
|+......++++.. ++++..++
T Consensus 67 ---p~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 67 ---PVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred ---cHHHHHHHHHHHhc-cCCCCEEE
Confidence 44455567777777 77765443
|
|
| >PF14740 DUF4471: Domain of unknown function (DUF4471) | Back alignment and domain information |
|---|
Probab=83.24 E-value=0.81 Score=36.87 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=39.4
Q ss_pred CCceeEEEechh-hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 148 NIKYDVIWIQWV-LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 148 ~~~~D~V~~~~~-l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
.+.||+|+.... .|.+.++ +.++++|+|.+++.....- ..-......--.+.+.++.+++||+...
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~~A~LvvEtaKfm-----vdLrKEq~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE--------LFQALAPDAVLVVETAKFM-----VDLRKEQLQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH--------HHHHhCCCCEEEEEcchhh-----eeCCHHHHHHHHHHHHHHHHHCCCcccc
Confidence 367999987754 4555432 6678899999998521110 0100111112346778899999998653
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.18 E-value=7.8 Score=31.36 Aligned_cols=95 Identities=18% Similarity=0.129 Sum_probs=53.8
Q ss_pred CeEEEEcCCCC--HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC------CCcc----------eE-EEccccccC
Q psy8370 83 TRVLDVGAGIG--RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC------DKLD----------KC-YNVGIQDFK 143 (256)
Q Consensus 83 ~~vLDiG~G~G--~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~i~----------~~-~~~d~~~~~ 143 (256)
.+|.=||+|.- .++..++..|. +|+.+|.+++.++.+++...... ..+. .+ ...|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a- 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA- 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH-
Confidence 46788888843 34444555565 89999999998888776542110 0110 00 12222211
Q ss_pred CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 144 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 144 ~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
. ...|+|+.... ..+ +-...+++++...++++..+.
T Consensus 82 --~--~~aDlVieavp-e~~--~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 82 --V--KDADLVIEAVP-EDP--EIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred --h--cCCCEEEEecc-CCH--HHHHHHHHHHHhhCCCCCEEE
Confidence 1 14688887632 111 234567888888887776553
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.17 E-value=21 Score=28.30 Aligned_cols=76 Identities=14% Similarity=0.093 Sum_probs=44.5
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCcceEEEccccccCCCCC--------
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD--CDKLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~i~~~~~~d~~~~~~~~~-------- 147 (256)
+++++|-.|++.|. ++..++++|+ +|++++-++...+...+..... ..++ .++..|+.+......
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~ 83 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAV-RYEPADVTDEDQVARAVDAATAW 83 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCce-EEEEcCCCCHHHHHHHHHHHHHH
Confidence 35788888865442 4444555677 8999998876555444443322 1245 677778765432110
Q ss_pred CCceeEEEech
Q psy8370 148 NIKYDVIWIQW 158 (256)
Q Consensus 148 ~~~~D~V~~~~ 158 (256)
.+..|+++.+.
T Consensus 84 ~~~~d~li~~a 94 (276)
T PRK05875 84 HGRLHGVVHCA 94 (276)
T ss_pred cCCCCEEEECC
Confidence 12579888764
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.15 E-value=22 Score=28.46 Aligned_cols=106 Identities=11% Similarity=0.019 Sum_probs=58.2
Q ss_pred CCCeEEEEcCC--CC--H-hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------C
Q psy8370 81 GKTRVLDVGAG--IG--R-ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------L 147 (256)
Q Consensus 81 ~~~~vLDiG~G--~G--~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~ 147 (256)
.++++|=.|++ .| . .+..+++.|+ +|+.++.++...+.+.+.....+ .. ..+..|+.+..... .
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~-~~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELG-SD-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcC-Cc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 35788888875 23 2 5555666777 78888887543333333222222 11 35667776653211 0
Q ss_pred CCceeEEEechhhh----------ccCHHHHH-----------HHHHHHhhhcCCCcEEEEEe
Q psy8370 148 NIKYDVIWIQWVLM----------FILDEDII-----------KFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~----------~~~~~~~~-----------~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+.+|+++.+.... ..+.+++. .+.+.+.+.|+.+|.++...
T Consensus 81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~is 143 (274)
T PRK08415 81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLS 143 (274)
T ss_pred cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEe
Confidence 24789998875432 12223322 23455666777778776653
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=83.14 E-value=3 Score=35.19 Aligned_cols=98 Identities=14% Similarity=-0.025 Sum_probs=54.4
Q ss_pred CCCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc-----cccccCCCCCCCc
Q psy8370 78 SDPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-----GIQDFKPEDLNIK 150 (256)
Q Consensus 78 ~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~-----d~~~~~~~~~~~~ 150 (256)
...++.+||-.|+| -|..+..++.. |...++++|.++.-.+.+++. +.. .++.. ++.........+.
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----Ga~--~~i~~~~~~~~~~~~v~~~~~~g 263 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----GVT--DFINPNDLSEPIQQVIKRMTGGG 263 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc--EEEcccccchHHHHHHHHHhCCC
Confidence 45678899988864 23344444433 554688999888877766442 211 12211 1111000000125
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCC-cEEEEEe
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKN-GIIIIKD 189 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 189 (256)
+|+|+-...- ...+....+.+++| |.+++.-
T Consensus 264 ~d~vid~~G~--------~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 264 ADYSFECVGD--------TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCEEEECCCC--------hHHHHHHHHhhccCCCEEEEEC
Confidence 8988865321 13456677788898 9998753
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.95 E-value=8.9 Score=30.01 Aligned_cols=77 Identities=9% Similarity=-0.040 Sum_probs=49.0
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|-.|++.|. ++..++++|. +|+.++-++.-.+...+.+...+.++ .++.+|+.+...... .+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEA-LFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCce-EEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 45788888875553 4455556676 79999998876666555555444456 777888865421100 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 84 ~id~li~~ag 93 (253)
T PRK06172 84 RLDYAFNNAG 93 (253)
T ss_pred CCCEEEECCC
Confidence 6799987654
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.83 E-value=9.3 Score=29.96 Aligned_cols=77 Identities=13% Similarity=0.079 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
+++++|-.|++.|. ++..++++|+ +|+.++-+++.++...+.+...+.++ .++.+|+.+..... ..+
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAA-EALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCce-EEEEccCCCHHHHHHHHHHHHHhcC
Confidence 46788888865542 4444555676 89999998876665555554444455 67788876542110 013
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
++|.++.+..
T Consensus 88 ~id~vi~~ag 97 (256)
T PRK06124 88 RLDILVNNVG 97 (256)
T ss_pred CCCEEEECCC
Confidence 6788887643
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=82.78 E-value=13 Score=27.21 Aligned_cols=113 Identities=13% Similarity=0.100 Sum_probs=62.2
Q ss_pred eEEEEcCCCC--HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhh
Q psy8370 84 RVLDVGAGIG--RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 161 (256)
Q Consensus 84 ~vLDiG~G~G--~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~ 161 (256)
+|-=||+|.= .++..|++.|+ +|++.|.+++..+...+. + -....+..+.. . ..|+|++...
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~----g----~~~~~s~~e~~---~--~~dvvi~~v~-- 66 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA----G----AEVADSPAEAA---E--QADVVILCVP-- 66 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT----T----EEEESSHHHHH---H--HBSEEEE-SS--
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh----h----hhhhhhhhhHh---h--cccceEeecc--
Confidence 4555666532 24445555677 899999998766555432 1 22334444442 1 4688887522
Q ss_pred ccCHHHHHHHHHH--HhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 162 FILDEDIIKFLNL--CKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 162 ~~~~~~~~~~l~~--~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
+++....++.. +...|++|..++-.... -..+..++.+.+.+.|...++.-
T Consensus 67 --~~~~v~~v~~~~~i~~~l~~g~iiid~sT~--------------~p~~~~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 67 --DDDAVEAVLFGENILAGLRPGKIIIDMSTI--------------SPETSRELAERLAAKGVRYVDAP 119 (163)
T ss_dssp --SHHHHHHHHHCTTHGGGS-TTEEEEE-SS----------------HHHHHHHHHHHHHTTEEEEEEE
T ss_pred --cchhhhhhhhhhHHhhccccceEEEecCCc--------------chhhhhhhhhhhhhccceeeeee
Confidence 11445567777 78888887766653111 11234567777888887766544
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.71 E-value=17 Score=28.61 Aligned_cols=104 Identities=9% Similarity=0.039 Sum_probs=57.2
Q ss_pred CCCeEEEEcCCC--C---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------
Q psy8370 81 GKTRVLDVGAGI--G---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~--G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-------- 147 (256)
.++++|-.|+++ | .++..+++.|+ +|+.++.++...+.+.+. . ...+ .++..|+.+......
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~-~--~~~~-~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKL-V--DEED-LLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhh-c--cCce-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 457888888762 3 25566666777 788887764433322222 1 1234 667788765421110
Q ss_pred CCceeEEEechhhhc----------cCHHHH-----------HHHHHHHhhhcCCCcEEEEEe
Q psy8370 148 NIKYDVIWIQWVLMF----------ILDEDI-----------IKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~----------~~~~~~-----------~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+.+|+++.+..... .+.+++ ..+.+.+.+.|+.+|.++...
T Consensus 81 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~is 143 (252)
T PRK06079 81 VGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLT 143 (252)
T ss_pred hCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEe
Confidence 147899988754321 222222 223455566677778766543
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=82.57 E-value=11 Score=34.97 Aligned_cols=95 Identities=19% Similarity=0.160 Sum_probs=59.8
Q ss_pred CeEEEEcCCCC--HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC------CCcc---------eEE-EccccccCC
Q psy8370 83 TRVLDVGAGIG--RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC------DKLD---------KCY-NVGIQDFKP 144 (256)
Q Consensus 83 ~~vLDiG~G~G--~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~i~---------~~~-~~d~~~~~~ 144 (256)
.+|.-||+|+= ..+..++..|+ .|+.+|.+++.++.+..++...- ..+. .+. ..|+...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-- 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGF-- 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh--
Confidence 57999999973 35555666677 89999999999888776653210 0110 001 1122111
Q ss_pred CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
...|+|+=. +.+.+ +-..++++++-+.++|+.+|.-
T Consensus 391 ----~~aDlViEa-v~E~l--~~K~~vf~~l~~~~~~~~ilas 426 (715)
T PRK11730 391 ----ERVDVVVEA-VVENP--KVKAAVLAEVEQKVREDTILAS 426 (715)
T ss_pred ----cCCCEEEec-ccCcH--HHHHHHHHHHHhhCCCCcEEEE
Confidence 246777754 33444 5566899999999999876654
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.54 E-value=8.7 Score=30.75 Aligned_cols=77 Identities=10% Similarity=0.022 Sum_probs=48.7
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
.++++|-.|++.|. ++..|++.|+ +|+.++.++..++...+.+...+.++ .++..|+.+..... ..+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDV-HGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeE-EEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 45678877776553 5555666677 79999988876666555554433345 67778876543210 013
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+++.+..
T Consensus 83 ~id~li~nAg 92 (275)
T PRK05876 83 HVDVVFSNAG 92 (275)
T ss_pred CCCEEEECCC
Confidence 6899887754
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.50 E-value=5.4 Score=32.15 Aligned_cols=94 Identities=14% Similarity=0.183 Sum_probs=54.8
Q ss_pred CeEEEEcCCC--CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc------CCCcc---------eE-EEccccccCC
Q psy8370 83 TRVLDVGAGI--GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD------CDKLD---------KC-YNVGIQDFKP 144 (256)
Q Consensus 83 ~~vLDiG~G~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~i~---------~~-~~~d~~~~~~ 144 (256)
.+|.=||+|. +.++..++..|. +|+++|.+++.++.+++++... ...+. .+ ...|...
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~--- 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD--- 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH---
Confidence 3577788883 456666666676 8999999999887665433211 00010 01 1122211
Q ss_pred CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
. ...|+|+.... ..+ +....+++++.+.++|+..+.
T Consensus 80 -~--~~aDlVi~av~-e~~--~~k~~~~~~l~~~~~~~~il~ 115 (282)
T PRK05808 80 -L--KDADLVIEAAT-ENM--DLKKKIFAQLDEIAKPEAILA 115 (282)
T ss_pred -h--ccCCeeeeccc-ccH--HHHHHHHHHHHhhCCCCcEEE
Confidence 1 24788887521 111 233578888999999887663
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=82.27 E-value=11 Score=31.17 Aligned_cols=97 Identities=14% Similarity=0.015 Sum_probs=58.6
Q ss_pred CCCCCCCeEEEEcC--CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE---c-ccccc-CCCCCCC
Q psy8370 77 KSDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN---V-GIQDF-KPEDLNI 149 (256)
Q Consensus 77 ~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~---~-d~~~~-~~~~~~~ 149 (256)
....++.+||=.|+ |.|..+..+++....++++++.+++-.+.+++.+.. . .++. . +..+. ..... +
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa---~--~vi~~~~~~~~~~~i~~~~~-~ 220 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGF---D--DAFNYKEEPDLDAALKRYFP-N 220 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC---c--eeEEcCCcccHHHHHHHhCC-C
Confidence 35677889998886 466677766655333799988888777777653221 1 1221 1 21110 00011 2
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.+|+|+.... ...+..+.+.|+++|.++..
T Consensus 221 gvd~v~d~~g---------~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 221 GIDIYFDNVG---------GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CcEEEEECCC---------HHHHHHHHHHhccCcEEEEe
Confidence 5899886422 13566778899999999875
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.06 E-value=12 Score=28.98 Aligned_cols=76 Identities=16% Similarity=0.100 Sum_probs=46.9
Q ss_pred CCCeEEEEcCCCCH----hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR----ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~----~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
..+++|-.|+ +|. ++..++++|. +|++++.++...+...+.....+.++ .++.+|+.+...... .
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKA-AAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcE-EEEEccCCCHHHHHHHHHHHHHHc
Confidence 4567888885 444 4445555666 89999998776555555444333455 678888876532100 1
Q ss_pred CceeEEEechh
Q psy8370 149 IKYDVIWIQWV 159 (256)
Q Consensus 149 ~~~D~V~~~~~ 159 (256)
+..|+++.+..
T Consensus 82 ~~id~lv~~ag 92 (241)
T PRK07454 82 GCPDVLINNAG 92 (241)
T ss_pred CCCCEEEECCC
Confidence 35899987654
|
|
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=81.99 E-value=8.3 Score=31.19 Aligned_cols=60 Identities=17% Similarity=0.103 Sum_probs=47.9
Q ss_pred hHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc
Q psy8370 65 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD 127 (256)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 127 (256)
...++.+.+ .. ...++..|||.=+|+|..+......+- ..+|+|+++...+.+.+++...
T Consensus 208 P~~l~~r~i-~~-~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 208 PLALIERLI-RD-YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred hHHHHHHHH-Hh-cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 345566666 33 467889999999999999998755554 8999999999999999998754
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.92 E-value=5.3 Score=33.10 Aligned_cols=98 Identities=13% Similarity=0.167 Sum_probs=53.5
Q ss_pred CCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc---cccccCCCCCCCcee
Q psy8370 78 SDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV---GIQDFKPEDLNIKYD 152 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~---d~~~~~~~~~~~~~D 152 (256)
...++.+||=.|+|. |..+..++.. |...|++++.+++-.+.+++. +.. .++.. +............+|
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----Ga~--~~i~~~~~~~~~~~~~~~~~~~d 230 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----GAM--QTFNSREMSAPQIQSVLRELRFD 230 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc--eEecCcccCHHHHHHHhcCCCCC
Confidence 456778999888743 3344444443 554588999998877766442 110 11111 111110000112477
Q ss_pred -EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 153 -VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 153 -~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+-... -...+....+.|++||.+++..
T Consensus 231 ~~v~d~~G--------~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 231 QLILETAG--------VPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred eEEEECCC--------CHHHHHHHHHHhhcCCEEEEEc
Confidence 5554321 0246677788999999999864
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.81 E-value=9.6 Score=29.84 Aligned_cols=74 Identities=14% Similarity=0.109 Sum_probs=46.0
Q ss_pred CeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CCce
Q psy8370 83 TRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NIKY 151 (256)
Q Consensus 83 ~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~~~ 151 (256)
+++|-.|++.|. ++..++++|. +|++++-++...+...+.+...+.++ .++..|+.+...... .+..
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQV-LTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcE-EEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 567877876652 4555556677 89999988776666655554333355 677788765321100 1367
Q ss_pred eEEEech
Q psy8370 152 DVIWIQW 158 (256)
Q Consensus 152 D~V~~~~ 158 (256)
|+++.+.
T Consensus 80 d~lI~~a 86 (252)
T PRK07677 80 DALINNA 86 (252)
T ss_pred cEEEECC
Confidence 9888764
|
|
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.79 E-value=11 Score=31.08 Aligned_cols=99 Identities=15% Similarity=0.071 Sum_probs=56.2
Q ss_pred cCCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcc-------ccccCCCC
Q psy8370 76 KKSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG-------IQDFKPED 146 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d-------~~~~~~~~ 146 (256)
.....++.+||-.|+|. |..+..+++. |...+++++.+++..+.+++. .. ..+......+ +.... ..
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~--~~vi~~~~~~~~~~~~~~~~~~-~~ 232 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GA--THTVNVRTEDTPESAEKIAELL-GG 232 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC--cEEeccccccchhHHHHHHHHh-CC
Confidence 34567788888877654 5555555554 442388898888777666442 11 1110111111 11111 11
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
..+|+|+....- ...++...+.|+++|.++..
T Consensus 233 --~~~d~vld~~g~--------~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 233 --KGPDVVIECTGA--------ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred --CCCCEEEECCCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 258999875321 12566778899999998865
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=81.77 E-value=11 Score=30.57 Aligned_cols=92 Identities=13% Similarity=0.120 Sum_probs=49.7
Q ss_pred eEEEEcCCCC--HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCc-c-eEEE--ccccccCCCCCCCceeEEEec
Q psy8370 84 RVLDVGAGIG--RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKL-D-KCYN--VGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 84 ~vLDiG~G~G--~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i-~-~~~~--~d~~~~~~~~~~~~~D~V~~~ 157 (256)
+|+=||+|.- .++..|+..|. +|+.++.+++..+..++. +..+ . .... .-..+... . ..+|+|+..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~-~--~~~d~vila 73 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNEN----GLRLEDGEITVPVLAADDPAE-L--GPQDLVILA 73 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHc----CCcccCCceeecccCCCChhH-c--CCCCEEEEe
Confidence 5778888743 34455555565 899999876655544432 1111 0 0000 00011111 1 268988876
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
--- .+...+++.+...+.++..++..
T Consensus 74 ~k~-----~~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 74 VKA-----YQLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred ccc-----ccHHHHHHHHhhhcCCCCEEEEe
Confidence 332 23456778888888877666654
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=81.52 E-value=27 Score=28.42 Aligned_cols=113 Identities=12% Similarity=0.143 Sum_probs=59.0
Q ss_pred eEEEEcCCC--CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhh
Q psy8370 84 RVLDVGAGI--GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 161 (256)
Q Consensus 84 ~vLDiG~G~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~ 161 (256)
+|-=||+|. ..++..+++.+. +|++.|.+++..+.+.+ .+ . . ...+..+...... ..|+|+..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~----~g--~-~-~~~s~~~~~~~~~--~advVi~~---- 66 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVDVAGK----LG--I-T-ARHSLEELVSKLE--APRTIWVM---- 66 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH----CC--C-e-ecCCHHHHHHhCC--CCCEEEEE----
Confidence 355567663 235555555666 78999999876554432 11 1 1 2223333221111 25777765
Q ss_pred ccCH-HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 162 FILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 162 ~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
+++ +....++..+...+++|..++-... ....+..++.+.+.+.|...++
T Consensus 67 -vp~~~~~~~v~~~i~~~l~~g~ivid~st--------------~~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 67 -VPAGEVTESVIKDLYPLLSPGDIVVDGGN--------------SRYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred -ecCchHHHHHHHHHhccCCCCCEEEECCC--------------CCchhHHHHHHHHHHcCCeEEe
Confidence 222 2445666777777877655443211 1111345566677777765544
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.50 E-value=25 Score=27.97 Aligned_cols=76 Identities=13% Similarity=0.036 Sum_probs=44.4
Q ss_pred CCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCC-------CCC
Q psy8370 82 KTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPED-------LNI 149 (256)
Q Consensus 82 ~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~-------~~~ 149 (256)
+.++|-.|++.|. ++..++++|+ +|++++-++...+...+.....+ .++ .++.+|+.+..... .-+
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~d~~~~~~~~~~~~~~~ 80 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNI-KVQQLDVTDQNSIHNFQLVLKEIG 80 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCce-eEEecCCCCHHHHHHHHHHHHhcC
Confidence 3567878865442 4444556676 79999887766555544333222 245 77788887643210 013
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+|+.+..
T Consensus 81 ~id~vv~~ag 90 (280)
T PRK06914 81 RIDLLVNNAG 90 (280)
T ss_pred CeeEEEECCc
Confidence 5788887643
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=81.43 E-value=17 Score=30.14 Aligned_cols=99 Identities=14% Similarity=0.026 Sum_probs=56.1
Q ss_pred CCCCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc---cccc-cCCCCCCCc
Q psy8370 77 KSDPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV---GIQD-FKPEDLNIK 150 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~---d~~~-~~~~~~~~~ 150 (256)
....++.+||-.|+| .|..+..+++. |...+++++.+++-.+.+++. + ...++.. +... .........
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g--~~~~v~~~~~~~~~~i~~~~~~~~ 235 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY----G--ATDIVDYKNGDVVEQILKLTGGKG 235 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C--CceEecCCCCCHHHHHHHHhCCCC
Confidence 345677889888765 34444555444 454689999998777666642 1 1022211 1100 000001125
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+++....- ...+..+.+.|+++|.++...
T Consensus 236 ~d~vld~~g~--------~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 236 VDAVIIAGGG--------QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CcEEEECCCC--------HHHHHHHHHHhhcCCEEEEec
Confidence 8988864220 135677888899999988653
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria | Back alignment and domain information |
|---|
Probab=81.28 E-value=15 Score=25.56 Aligned_cols=68 Identities=22% Similarity=0.180 Sum_probs=48.7
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
-.|+|+..+--. +.++...|-.+.+.|..+|.+.+..+.. ...-+.++.++.+....+|+.......
T Consensus 45 vvD~vllWwR~~---DgDL~D~LvDa~~~L~d~G~IWvltPK~----------gr~g~V~~~~I~eaA~taGL~~t~~~~ 111 (127)
T PF11253_consen 45 VVDVVLLWWRDD---DGDLVDALVDARTNLADDGVIWVLTPKA----------GRPGHVEPSDIREAAPTAGLVQTKSCA 111 (127)
T ss_pred cccEEEEEEECC---cchHHHHHHHHHhhhcCCCEEEEEccCC----------CCCCCCCHHHHHHHHhhcCCeeeeeec
Confidence 589988864422 2366778888899999999999964322 222345778999999999998876554
Q ss_pred e
Q psy8370 230 V 230 (256)
Q Consensus 230 ~ 230 (256)
.
T Consensus 112 v 112 (127)
T PF11253_consen 112 V 112 (127)
T ss_pred c
Confidence 3
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=81.28 E-value=3.6 Score=34.71 Aligned_cols=98 Identities=13% Similarity=0.031 Sum_probs=55.6
Q ss_pred CCCCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcc-----ccc-cCCCCCC
Q psy8370 77 KSDPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG-----IQD-FKPEDLN 148 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d-----~~~-~~~~~~~ 148 (256)
....++.+||-+|+| .|..+..+++. |..+|+++|.++.-++.+++. +.. .++... +.+ ......
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~--~~i~~~~~~~~~~~~v~~~~~- 266 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----GIT--DFINPKDSDKPVHERIREMTG- 266 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----CCc--EEEecccccchHHHHHHHHhC-
Confidence 356778899999875 23444444443 444699999998877777542 111 222111 111 000011
Q ss_pred CceeEEEechhhhccCHHHHHHHHHHHhhhcCCC-cEEEEEe
Q psy8370 149 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKN-GIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 189 (256)
+.+|+|+-...- ...++.....++++ |.+++..
T Consensus 267 ~g~dvvid~~G~--------~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 267 GGVDYSFECAGN--------VEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCCEEEECCCC--------hHHHHHHHHhhhcCCCEEEEEc
Confidence 148988865331 13555666778886 8887754
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.15 E-value=7.1 Score=30.79 Aligned_cols=73 Identities=16% Similarity=0.136 Sum_probs=46.3
Q ss_pred eEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCCcee
Q psy8370 84 RVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNIKYD 152 (256)
Q Consensus 84 ~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~~~D 152 (256)
++|-.|++.|. ++..++++|+ +|+.++.++..++.+.+.+...+ ++ .++..|+.+..... ..+.+|
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~-~~~~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYG-EV-YAVKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-Cc-eEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 57777876553 5555666777 79999998877766655554332 45 67778876532110 013689
Q ss_pred EEEechh
Q psy8370 153 VIWIQWV 159 (256)
Q Consensus 153 ~V~~~~~ 159 (256)
+++.+..
T Consensus 79 ~li~naG 85 (259)
T PRK08340 79 ALVWNAG 85 (259)
T ss_pred EEEECCC
Confidence 9887644
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=81.14 E-value=5.1 Score=32.98 Aligned_cols=101 Identities=14% Similarity=0.062 Sum_probs=57.1
Q ss_pred CCCCCCCeEEEEcCCC-CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccc-cCCCCCCCceeEE
Q psy8370 77 KSDPGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD-FKPEDLNIKYDVI 154 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~-~~~~~~~~~~D~V 154 (256)
....++.+||-.|+|. |..+..++.....+++++..+++..+.+++. . ...+......++.+ +........+|++
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~-g--~~~v~~~~~~~~~~~l~~~~~~~~vd~v 231 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL-G--ADDTINVGDEDVAARLRELTDGEGADVV 231 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh-C--CCEEecCcccCHHHHHHHHhCCCCCCEE
Confidence 3556788999998763 6666666665333788888888777766442 1 11110111111111 1000011258999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+....- ...+..+.+.|+++|.++..
T Consensus 232 ld~~g~--------~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 232 IDATGN--------PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred EECCCC--------HHHHHHHHHHHhcCCEEEEE
Confidence 875320 13567778899999998865
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.12 E-value=11 Score=29.54 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=48.3
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|=.|++.|. ++..+++.|+ +|++++.++...+...+.+...+.+. .++..|+.+...... .+
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKA-EALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeE-EEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 35678888877663 5555666676 89999998776666555554433344 566777755432110 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
++|+++.+..
T Consensus 85 ~id~li~~ag 94 (252)
T PRK07035 85 RLDILVNNAA 94 (252)
T ss_pred CCCEEEECCC
Confidence 6899886653
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.11 E-value=11 Score=29.83 Aligned_cols=78 Identities=13% Similarity=0.022 Sum_probs=51.0
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
.++++|-.|++.|. ++..++++|+ +++.++-++..++.....+...+.++ .++.+|+.+..... ..+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEA-HGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCce-EEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 45788888877653 5566667777 78888888877666666655444455 67788876543210 013
Q ss_pred ceeEEEechhh
Q psy8370 150 KYDVIWIQWVL 160 (256)
Q Consensus 150 ~~D~V~~~~~l 160 (256)
.+|+++.+...
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 68999877543
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=80.96 E-value=3.5 Score=31.45 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=26.0
Q ss_pred CCCeEEEEcCCC-C-HhHHHHHHhcCCeEEEEeCC
Q psy8370 81 GKTRVLDVGAGI-G-RISKYLLAKHFDKIDLLEQS 113 (256)
Q Consensus 81 ~~~~vLDiG~G~-G-~~~~~l~~~~~~~v~~vD~s 113 (256)
.+.+|+=+|||. | ..+..|+..|..+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 468899999983 4 46666777788899999987
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.96 E-value=17 Score=32.04 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=60.8
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|=.|++.| .++..++++|+ +|+.++.++..++...+.. +.+. ..+..|+.+...... .+
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g 342 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEAL---GDEH-LSVQADITDEAAVESAFAQIQARWG 342 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCce-eEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4567887887666 35566666777 8999998877666555433 2233 456777765432110 14
Q ss_pred ceeEEEechhhh-------ccCHHHHH-----------HHHHHHhhhcCCCcEEEEEe
Q psy8370 150 KYDVIWIQWVLM-------FILDEDII-----------KFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 150 ~~D~V~~~~~l~-------~~~~~~~~-----------~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+|+++.+.... ..+.+++. .+.+.+...++.+|.+++..
T Consensus 343 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~is 400 (520)
T PRK06484 343 RLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLG 400 (520)
T ss_pred CCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEEC
Confidence 689998764321 12222222 23555566667778877753
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.90 E-value=11 Score=29.55 Aligned_cols=77 Identities=13% Similarity=0.031 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
.+++||-.|++.|. ++..++++|. +++.++.+....+.........+.++ .++..|+.+..... ..+
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~-~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQA-FACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcE-EEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46889999976663 4455666676 78888888777666555554433345 66778877553211 013
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 88 ~~d~li~~ag 97 (255)
T PRK06113 88 KVDILVNNAG 97 (255)
T ss_pred CCCEEEECCC
Confidence 6798887644
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.89 E-value=11 Score=29.70 Aligned_cols=77 Identities=16% Similarity=0.118 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh--cCCCcceEEEccccccCCCCC--------
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK--DCDKLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~i~~~~~~d~~~~~~~~~-------- 147 (256)
.++++|-.|++.|. ++..++++|+ +|+.++.++...+...+.+.. .+.++ .++..|+.+......
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARV-LAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceE-EEEEccCCCHHHHHHHHHHHHHH
Confidence 46788888876552 5555666777 799999988777666665543 22345 677788765431110
Q ss_pred CCceeEEEechh
Q psy8370 148 NIKYDVIWIQWV 159 (256)
Q Consensus 148 ~~~~D~V~~~~~ 159 (256)
.+.+|+++.+..
T Consensus 84 ~g~id~li~~ag 95 (260)
T PRK07063 84 FGPLDVLVNNAG 95 (260)
T ss_pred hCCCcEEEECCC
Confidence 136898887654
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=80.78 E-value=6.1 Score=32.62 Aligned_cols=91 Identities=15% Similarity=0.065 Sum_probs=54.0
Q ss_pred CeEEEEcC--CCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc---cccccC-CCCCCCceeEEE
Q psy8370 83 TRVLDVGA--GIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV---GIQDFK-PEDLNIKYDVIW 155 (256)
Q Consensus 83 ~~vLDiG~--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~---d~~~~~-~~~~~~~~D~V~ 155 (256)
.+||=.|+ |.|..+..++.. |..+|++++.+++-.+.+++.+.. . .++.. ++.+.. ...+ +.+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa--~---~vi~~~~~~~~~~i~~~~~-~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF--D---AAINYKTDNVAERLRELCP-EGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC--c---EEEECCCCCHHHHHHHHCC-CCceEEE
Confidence 78988885 567777777665 443799999888776666553321 1 22211 111100 0011 2589998
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.... . ..+..+.+.|+++|.++..
T Consensus 230 d~~g------~---~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 230 DNVG------G---EISDTVISQMNENSHIILC 253 (345)
T ss_pred ECCC------c---HHHHHHHHHhccCCEEEEE
Confidence 6432 1 1245677889999999875
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=80.66 E-value=17 Score=25.97 Aligned_cols=72 Identities=15% Similarity=0.083 Sum_probs=39.8
Q ss_pred CCCCeEEEEcCCC-C-HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGI-G-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..+.+|+-+|+|. | ..+..+...+..+++.+|.+++..+...+.+.... + .....+..+. .. .+|+|++.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~--~-~~~~~~~~~~---~~--~~Dvvi~~ 88 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG--I-AIAYLDLEEL---LA--EADLIINT 88 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc--c-ceeecchhhc---cc--cCCEEEeC
Confidence 4568899999863 1 23334434444589999999876655444433210 1 1122232222 12 58999987
Q ss_pred hh
Q psy8370 158 WV 159 (256)
Q Consensus 158 ~~ 159 (256)
..
T Consensus 89 ~~ 90 (155)
T cd01065 89 TP 90 (155)
T ss_pred cC
Confidence 44
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.45 E-value=12 Score=30.40 Aligned_cols=76 Identities=12% Similarity=0.141 Sum_probs=47.8
Q ss_pred CCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCCc
Q psy8370 82 KTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNIK 150 (256)
Q Consensus 82 ~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~~ 150 (256)
+.++|=.|++.|. ++..++++|+ +|+.++.+++.++...+.....+..+ .++..|+.+..... ..+.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~-~~~~~Dl~d~~~v~~~~~~~~~~~g~ 117 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDA-MAVPCDLSDLDAVDALVADVEKRIGG 117 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcE-EEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4678888876553 4455556666 89999999877666655554433345 67778876543110 0136
Q ss_pred eeEEEechh
Q psy8370 151 YDVIWIQWV 159 (256)
Q Consensus 151 ~D~V~~~~~ 159 (256)
.|+++.+..
T Consensus 118 id~li~~AG 126 (293)
T PRK05866 118 VDILINNAG 126 (293)
T ss_pred CCEEEECCC
Confidence 899997743
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.43 E-value=6.9 Score=32.79 Aligned_cols=96 Identities=16% Similarity=0.079 Sum_probs=50.3
Q ss_pred CCCCCeEEEEcCC-CCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE-ccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAG-IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN-VGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~-~d~~~~~~~~~~~~~D~V~~ 156 (256)
..++.+||-.|+| .|..+..+++....++++++.++.-...+.+. .+.. .++. .+......... .+|+|+-
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~---~Ga~--~vi~~~~~~~~~~~~~--~~D~vid 253 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINR---LGAD--SFLVSTDPEKMKAAIG--TMDYIID 253 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHh---CCCc--EEEcCCCHHHHHhhcC--CCCEEEE
Confidence 3567788888875 34455555544333788888776533222111 1211 1221 11111111112 4788886
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
... . ...++.+.+.|+++|.++...
T Consensus 254 ~~g---~-----~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 254 TVS---A-----VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CCC---C-----HHHHHHHHHHhcCCcEEEEeC
Confidence 432 0 135667788999999998763
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.40 E-value=13 Score=29.52 Aligned_cols=77 Identities=10% Similarity=0.117 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc-CCCcceEEEccccccCCCCC-------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDL-------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~i~~~~~~d~~~~~~~~~-------~~ 149 (256)
.++++|-.|++.|. ++..+++.|+ +|+.++.++..++...+.+... +.++ .++..|+.+...... .+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDV-SYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCce-EEEEecCCCHHHHHHHHHHHHhhC
Confidence 45678888877663 5566667787 7999999887766665554432 2345 677788766432110 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 85 ~iD~lv~nag 94 (263)
T PRK08339 85 EPDIFFFSTG 94 (263)
T ss_pred CCcEEEECCC
Confidence 6898887643
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.39 E-value=13 Score=29.18 Aligned_cols=77 Identities=13% Similarity=0.033 Sum_probs=49.2
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
.++++|=.|++.|. ++..+++.|+ +|+.++.++...+...+.+...+.++ .++.+|+.+..... ..+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEA-VALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcE-EEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 35678877776552 5556666677 79999988877766666655444455 67777876543110 013
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 83 ~id~li~~ag 92 (254)
T PRK07478 83 GLDIAFNNAG 92 (254)
T ss_pred CCCEEEECCC
Confidence 6898887754
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.17 E-value=9 Score=31.30 Aligned_cols=76 Identities=17% Similarity=0.052 Sum_probs=45.6
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCH----------HHHHHHHHHHHhcCCCcceEEEccccccCCCCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSS----------KFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~----------~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~ 147 (256)
.++++|-.|++.|. .+..++..|+ +|+.++.++ +.++.+.+.+...+.++ .++..|+.+......
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRG-IAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecccccccccccccchHHHHHHHHHhcCCce-EEEEcCCCCHHHHHH
Confidence 46788989987763 5555666677 788887763 23333334444333345 567778765432110
Q ss_pred --------CCceeEEEech
Q psy8370 148 --------NIKYDVIWIQW 158 (256)
Q Consensus 148 --------~~~~D~V~~~~ 158 (256)
.+..|+++.+.
T Consensus 85 ~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 85 LVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHcCCccEEEECC
Confidence 24689988775
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.15 E-value=24 Score=27.32 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=41.5
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
+++++|=.|++.|. ++..++++|+ +|++++.++..++...+.. +.++ .++..|+.+..... ..+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~---~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAEL---GESA-LVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHh---CCce-EEEEecCCCHHHHHHHHHHHHHHhC
Confidence 35677877765442 4445555676 7999988866554443332 2244 56677765532110 013
Q ss_pred ceeEEEech
Q psy8370 150 KYDVIWIQW 158 (256)
Q Consensus 150 ~~D~V~~~~ 158 (256)
.+|+++.+.
T Consensus 80 ~id~vi~~a 88 (249)
T PRK06500 80 RLDAVFINA 88 (249)
T ss_pred CCCEEEECC
Confidence 689888664
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=80.13 E-value=13 Score=31.82 Aligned_cols=102 Identities=8% Similarity=0.029 Sum_probs=57.5
Q ss_pred CCCCCCeEEEEcC--CCCHhHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhc----CCCcceEEE----ccccccCC
Q psy8370 78 SDPGKTRVLDVGA--GIGRISKYLLAK---HFDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYN----VGIQDFKP 144 (256)
Q Consensus 78 ~~~~~~~vLDiG~--G~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~----~~~i~~~~~----~d~~~~~~ 144 (256)
...++.+|+=+|+ +.|..+..++.. |..+|+++|.++.-++.+++.+... +... .++. .++.+...
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~-~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIEL-LYVNPATIDDLHATLM 250 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceE-EEECCCccccHHHHHH
Confidence 4566788888873 366777776665 3347999999999888887753211 1010 1111 11111000
Q ss_pred -CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 145 -EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 145 -~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
......+|+|+....- ...+....+.++++|.+++.
T Consensus 251 ~~t~g~g~D~vid~~g~--------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 251 ELTGGQGFDDVFVFVPV--------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHhCCCCCCEEEEcCCC--------HHHHHHHHHHhccCCeEEEE
Confidence 0011258888764210 24566677888988866553
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.09 E-value=12 Score=33.28 Aligned_cols=78 Identities=15% Similarity=0.090 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
.+.++|=+|+..|. ++..++++|+ +|+.++.+....+...+.....+.++ .++.+|+.+..... ..+
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVA-HAYRVDVSDADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeE-EEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 34678877764442 4455556677 79999998877666655555444455 77788887653211 023
Q ss_pred ceeEEEechhh
Q psy8370 150 KYDVIWIQWVL 160 (256)
Q Consensus 150 ~~D~V~~~~~l 160 (256)
.+|+++.+...
T Consensus 392 ~id~lv~~Ag~ 402 (582)
T PRK05855 392 VPDIVVNNAGI 402 (582)
T ss_pred CCcEEEECCcc
Confidence 68999987543
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.03 E-value=9.5 Score=31.23 Aligned_cols=77 Identities=16% Similarity=0.070 Sum_probs=48.6
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPED--------L 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~--------~ 147 (256)
.+++++=.|++.|. .+..|+..|+ +|+.+.-+++-.+.+.+.+.... .++ .++..|+.+..... .
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v-~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKL-SLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCce-EEEEecCCCHHHHHHHHHHHHHh
Confidence 45788888877663 5555666676 88888888776665555444321 245 67788876643211 0
Q ss_pred CCceeEEEechh
Q psy8370 148 NIKYDVIWIQWV 159 (256)
Q Consensus 148 ~~~~D~V~~~~~ 159 (256)
.+..|+++.+..
T Consensus 91 ~~~iD~li~nAG 102 (313)
T PRK05854 91 GRPIHLLINNAG 102 (313)
T ss_pred CCCccEEEECCc
Confidence 246899987754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 256 | ||||
| 2ex4_A | 241 | Crystal Structure Of Human Methyltransferase Ad-003 | 2e-40 | ||
| 1xtp_A | 254 | Structural Analysis Of Leishmania Major Lmaj004091a | 4e-32 | ||
| 3uj6_A | 266 | Semet Phosphoethanolamine Methyltransferase From Pl | 5e-04 | ||
| 3uj7_A | 266 | Phosphoethanolamine Methyltransferase From Plasmodi | 7e-04 | ||
| 3ujd_A | 266 | Phosphoethanolamine Methyltransferase Mutant (Y19f) | 7e-04 |
| >pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In Complex With S-adenosyl-l-homocysteine Length = 241 | Back alignment and structure |
|
| >pdb|1XTP|A Chain A, Structural Analysis Of Leishmania Major Lmaj004091aaa, A Sam-dependent Methyltransferase Of The Duf858/pfam05891 Family Length = 254 | Back alignment and structure |
|
| >pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From Plasmodium Falciparum In Complex With Sam And Po4 Length = 266 | Back alignment and structure |
|
| >pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium Falciparum In Complex With Sam And Po4 Length = 266 | Back alignment and structure |
|
| >pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From Plasmodium Falciparum In Complex With Phosphocholine Length = 266 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 209 bits (533), Expect = 4e-68
Identities = 84/214 (39%), Positives = 124/214 (57%), Gaps = 3/214 (1%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 92
YS+ Y+ +PPT+DGML GY IS +DI +S +FL + + G + LD GAGI
Sbjct: 31 YSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGI 90
Query: 93 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 152
GRI+K LL F ++D+++ + F+ QAK + ++ ++ + G+QDF PE YD
Sbjct: 91 GRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEP--DSYD 148
Query: 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQ 212
VIWIQWV+ + D+ + +FL CK L NGII+IKDN+A DD DSSV R L
Sbjct: 149 VIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE-GVILDDVDSSVCRDLDV 207
Query: 213 FCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
+ A L + E+ +P ++ +Y FAL+
Sbjct: 208 VRRIICSAGLSLLAEERQENLPDEIYHVYSFALR 241
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 6e-61
Identities = 77/214 (35%), Positives = 114/214 (53%), Gaps = 9/214 (4%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 92
Y + EY+ VP T+ G+L G + D+DI+ S F++SL G +R LD GAGI
Sbjct: 50 YGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLP-----GHGTSRALDCGAGI 104
Query: 93 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 152
GRI+K LL K + DLLE +E+AK E+ + K ++ YD
Sbjct: 105 GRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLPP--NTYD 160
Query: 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQ 212
+I IQW +++ D D +KF C+Q L NG I K+N ++G + D EDSS+ RS
Sbjct: 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIH 220
Query: 213 FCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
+ LF+++ ++ VK P LF + M+ALK
Sbjct: 221 YKRLFNESGVRVVKEAFQEEWPTDLFPLKMYALK 254
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 2e-13
Identities = 25/167 (14%), Positives = 58/167 (34%), Gaps = 20/167 (11%)
Query: 29 NRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDV 88
+ YY D Y + L L ++ + VL++
Sbjct: 4 SHGLIESQLSYYRARASEYDATFVPYMDSAAP------AALERL----RAGNIRGDVLEL 53
Query: 89 GAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG-IQDFKPEDL 147
+G G ++ L+ D++ L+ S++ I +A L + + + + D+ P+
Sbjct: 54 ASGTGYWTR-HLSGLADRVTALDGSAEMIAEAGRHGLDNVE-----FRQQDLFDWTPDR- 106
Query: 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 194
++D ++ L + D+ F + + G++ D
Sbjct: 107 --QWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHE 151
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 2e-13
Identities = 35/210 (16%), Positives = 64/210 (30%), Gaps = 28/210 (13%)
Query: 34 SEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIG 93
+E + T D + G L + + VL+ G G G
Sbjct: 3 TEFNGLFDEWAHTYDSFVQGEDIQYKEVFAHYEDILEDV-----VNKSFGNVLEFGVGTG 57
Query: 94 RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDV 153
++ L + +E S + AKE KL K +++ DF ++ D
Sbjct: 58 NLTN-KLLLAGRTVYGIEPSREMRMIAKE-------KLPKEFSITEGDFLSFEVPTSIDT 109
Query: 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV---------------ASGVKNE 198
I + + D++ + Q+LNK G I+ D + G
Sbjct: 110 IVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQL 169
Query: 199 YDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228
+D + +P +F +
Sbjct: 170 ANDLQTEYYTRIPVMQTIFENNGFHVTFTR 199
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 2e-13
Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 25/161 (15%)
Query: 27 DGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVL 86
D ++ + +Y G Y+ T +FL L P ++L
Sbjct: 4 DMTQAFDDDTLRFY-------RGNATAYAERQP-RSATLTKFLGEL-------PAGAKIL 48
Query: 87 DVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED 146
++G G G ++ +LA FD +D + S + +A + + + D
Sbjct: 49 ELGCGAGYQAEAMLAAGFD-VDATDGSPELAAEASRRLGRPVRTML------FHQLDAID 101
Query: 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
YD +W L+ + +++ L L + L G+
Sbjct: 102 ---AYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYA 139
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 6e-13
Identities = 28/207 (13%), Positives = 68/207 (32%), Gaps = 27/207 (13%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 92
+V++ YS+ + +L S D D + +LDVG+G
Sbjct: 2 TDDVSKAYSSPTFDAEALLGTVISAEDPDRVLIEPWA---------TGVDGVILDVGSGT 52
Query: 93 GRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI- 149
GR + +L + ++ +++ +E A++ DL+
Sbjct: 53 GRWTGHLASLGHQIEGLEP---ATRLVELARQT-HPSVT-------FHHGTI--TDLSDS 99
Query: 150 --KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVV 207
++ + + L+ + ++ L + + G +++ ++ Y ++
Sbjct: 100 PKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYR 159
Query: 208 RSLPQFCLLFSKANLKCVKSEKVTGMP 234
LP+ A + S P
Sbjct: 160 WPLPELAQALETAGFQVTSSHWDPRFP 186
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 9e-12
Identities = 23/178 (12%), Positives = 52/178 (29%), Gaps = 27/178 (15%)
Query: 78 SDPGKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDK 130
+ +VLD+ A G + + D +E AKE +
Sbjct: 162 NKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVD----WASV---LEVAKE-NARIQGV 213
Query: 131 LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190
+ + + D YD++ + L + L K L G +I+ D
Sbjct: 214 ASRYHTIA-GSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDF 272
Query: 191 VASGVKNE------YDDE-----DSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSL 237
+ + + + + + ++ +FS A + + + +
Sbjct: 273 IPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQV 330
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 7e-11
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 63 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE 122
+T ++ L ++ K PG + LD+G G GR S YL A +D +D ++++ I +
Sbjct: 19 RTHSEVLEAV---KVVKPG--KTLDLGCGNGRNSLYLAANGYD-VDAWDKNAMSIANVER 72
Query: 123 EILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKN 182
+K + LD + + D + +YD I VLMF+ + I + ++
Sbjct: 73 --IKSIENLDNL-HTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG 129
Query: 183 GIIII 187
G +I
Sbjct: 130 GYNLI 134
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 8e-11
Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 25/165 (15%)
Query: 34 SEVTEYYSNVPPT----IDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVG 89
SE+ + V + + + + ++ +LD+G
Sbjct: 4 SEIKRKFDAVSGKYDEQRRKFIPCFDDFYGVSVSIASVD-----------TENPDILDLG 52
Query: 90 AGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN 148
AG G +S +L+ K+ + L++ S K +E AK + V + +
Sbjct: 53 AGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKN-------RFRGNLKVKYIEADYSKYD 105
Query: 149 I--KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191
KYD++ + + DED + IL ++GI I D V
Sbjct: 106 FEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLV 150
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 2e-10
Identities = 25/182 (13%), Positives = 59/182 (32%), Gaps = 32/182 (17%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLD 132
R+LD+G G+ + + + D L Q +E +++ +
Sbjct: 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVD----LPQQ---LEMMRKQT-AGLSGSE 229
Query: 133 KCYNVGIQDFKPEDLNI--KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190
+ + G + D+ +D +W+ L +E++I L Q + K+ + I +
Sbjct: 230 RIHGHGA-NLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMET 288
Query: 191 VASGVKNEYDDEDSSVV--------------RSLPQFCLLFSKANLKCVKSEKVTGMPKS 236
+ + E + + A L+ + + G+ S
Sbjct: 289 LWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHS 348
Query: 237 LF 238
+
Sbjct: 349 IL 350
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 3e-10
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 5/117 (4%)
Query: 71 SLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK 130
+VLD+G G GR S YL + + + + I E K+
Sbjct: 110 GDVVDAAKIISPCKVLDLGCGQGRNSLYL-SLLGYDVTSWDHNENSIAFLNETKEKENLN 168
Query: 131 LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
+ + + D ++ YD I V MF+ E + + K+ N G +I
Sbjct: 169 I----STALYDINAANIQENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLI 221
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 4e-10
Identities = 26/179 (14%), Positives = 51/179 (28%), Gaps = 26/179 (14%)
Query: 61 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQA 120
D + + L G R L G G G + + + L+ S + +A
Sbjct: 48 DQGRATPLIVHLVDTSSLPLG--RALVPGCGGGHDVVAMASPERF-VVGLDISESALAKA 104
Query: 121 KEEILKDCDKLDKCYNVG-IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQIL 179
E + + ++P + +D+I+ I E + ++L
Sbjct: 105 NETYGSSPKAEYFSFVKEDVFTWRPTE---LFDLIFDYVFFCAIEPEMRPAWAKSMYELL 161
Query: 180 NKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL-------LFSKANLKCVKSEKVT 231
+G +I Y D P + + + K V E+
Sbjct: 162 KPDGELIT---------LMYPITDH---VGGPPYKVDVSTFEEVLVPIGFKAVSVEENP 208
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 5e-10
Identities = 30/202 (14%), Positives = 73/202 (36%), Gaps = 24/202 (11%)
Query: 54 YSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDK------- 106
+S+ + ++ L + + + ++L +G G G I +L+K +
Sbjct: 25 HSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCIN 84
Query: 107 IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF-------KPEDLNIKYDVIWIQWV 159
+++E S++ I + KE + K + + + + + K+D I + +
Sbjct: 85 NEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQM 144
Query: 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS--------GVKNEYDDEDSSVVRSLP 211
L ++ +DI L +L N ++I S + + +D +
Sbjct: 145 LYYV--KDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSD 202
Query: 212 QFCLLFSKANLKCVKSEKVTGM 233
+ LK + ++ M
Sbjct: 203 DLTQMLDNLGLKYECYDLLSTM 224
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 1e-09
Identities = 35/161 (21%), Positives = 57/161 (35%), Gaps = 32/161 (19%)
Query: 50 MLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKT--------------RVLDVGAGIGRI 95
M N +I D ++ F S++ Q P T + D+G G G
Sbjct: 1 MSNENKTIHDFELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQ 60
Query: 96 SKYLLAKHFDK----IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL---N 148
+ LA H +D S FI+ + L V +DL N
Sbjct: 61 TMV-LAGHVTGQVTGLDF---LSGFIDIFNRNARQ--SGLQN--RVTGIVGSMDDLPFRN 112
Query: 149 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189
+ D+IW + + I E + LN ++ L K G + + +
Sbjct: 113 EELDLIWSEGAIYNIGFE---RGLNEWRKYLKKGGYLAVSE 150
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-09
Identities = 19/148 (12%), Positives = 41/148 (27%), Gaps = 30/148 (20%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLD 132
V+D+ G G +L +H +D + + K I
Sbjct: 178 ARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLG--------G 229
Query: 133 KCYNVGIQDF--KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190
+ ++ DV+ + L + + + + ++ G ++I
Sbjct: 230 RVEFFE-KNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTM 288
Query: 191 VASGVKNEYDDEDSSVVRSLPQFCLLFS 218
++D R P FS
Sbjct: 289 TM--------NDD----RVTPALSADFS 304
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 2e-09
Identities = 25/165 (15%), Positives = 55/165 (33%), Gaps = 6/165 (3%)
Query: 25 EKDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTR 84
+ E+ E+Y+++ ++I+ +N F+ + + + G
Sbjct: 12 KDQAMEGKKEEIREHYNSIRERG---RESRQRSKTINIRNANNFIKACLIRLYTKRGD-S 67
Query: 85 VLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 144
VLD+G G G + ++ + I A+ + + +
Sbjct: 68 VLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH 127
Query: 145 EDLNIKYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNGIIII 187
DL ++DVI Q+ + E + + L G I+
Sbjct: 128 MDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 172
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 5e-09
Identities = 17/109 (15%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 139
P VL++ AG+GR++ L ++ + LE S+ + ++ + + + +
Sbjct: 81 PVSGPVLELAAGMGRLTFPFLDLGWE-VTALELSTSVLAAFRKRLAEAPADVRDRCTLVQ 139
Query: 140 QDFKPEDLNIKYDVIWIQW-VLMFILDEDIIKFLNLCKQILNKNGIIII 187
D L+ ++ + I + + + D ++ L G ++
Sbjct: 140 GDMSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLL 188
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 6e-09
Identities = 20/133 (15%), Positives = 47/133 (35%), Gaps = 17/133 (12%)
Query: 59 DLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIE 118
D ++ L + P + +LDV G G ++ K F LE S +
Sbjct: 20 GKDYAAEASDIADLV--RSRTPEASSLLDVACGTGTHLEH-FTKEFGDTAGLELSEDMLT 76
Query: 119 QAKEEILKDCDKLDKCYNVG--IQDFKPEDLNIKYDVIWIQW-VLMFILD-EDIIKFLNL 174
A++ + + D + L K+ + + + ++ E++ +
Sbjct: 77 HARK----------RLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKTTEELGAAVAS 126
Query: 175 CKQILNKNGIIII 187
+ L G++++
Sbjct: 127 FAEHLEPGGVVVV 139
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 7e-09
Identities = 25/159 (15%), Positives = 57/159 (35%), Gaps = 28/159 (17%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 92
E+ E Y D + G D L++L ++ P +LDV G
Sbjct: 15 SGEIAELY-------DLVHQGK----GKDYHREAADLAALV--RRHSPKAASLLDVACGT 61
Query: 93 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI--QDFKPEDLNIK 150
G ++ LA F ++ LE S+ + A+ + + + D + L +
Sbjct: 62 GMHLRH-LADSFGTVEGLELSADMLAIARR----------RNPDAVLHHGDMRDFSLGRR 110
Query: 151 YDVIWIQW-VLMFILD-EDIIKFLNLCKQILNKNGIIII 187
+ + + + + ++ L + +G++++
Sbjct: 111 FSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVV 149
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 1e-08
Identities = 29/181 (16%), Positives = 72/181 (39%), Gaps = 20/181 (11%)
Query: 36 VTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRI 95
+ E Y+ + D + ++ F+ ++ + + RVLD+ G G
Sbjct: 1 MYELYTLLAEYYDTIYRRR----IERVKAEIDFVEEIFKEDAKREVR-RVLDLACGTGIP 55
Query: 96 SKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG-IQDFKPEDLNIKYDVI 154
+ LA+ ++ L+ + + A+ + + K++ + G + + ++ ++D +
Sbjct: 56 TLE-LAERGYEVVGLDLHEEMLRVARRKAKERNLKIE--FLQGDVLEIAFKN---EFDAV 109
Query: 155 WIQW-VLMFILDEDIIKFLNLCKQILNKNGIIII-------KDNVASGVKNEYDDEDSSV 206
+ + +M+ +ED+ K + + L G+ I V NE E+ V
Sbjct: 110 TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLV 169
Query: 207 V 207
+
Sbjct: 170 I 170
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 1e-08
Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 18/140 (12%)
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHFDK---IDLLEQSSKFIEQAKEEILKDCDKLDKCY 135
+P ++D G G +K+ L++ F + +D+ S +E A +E + Y
Sbjct: 55 NPEL-PLIDFACGNGTQTKF-LSQFFPRVIGLDV---SKSALEIAAKE----NTAANISY 105
Query: 136 NVG----IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191
+ + I I+++ I E + +L K G + + +
Sbjct: 106 RLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELG 165
Query: 192 ASGVKNEYDDEDSSVVRSLP 211
+ ++ + LP
Sbjct: 166 TGCI--DFFNSLLEKYGQLP 183
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 2e-08
Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 77 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 136
G RVLD+G G G + + + I + + + I+ + K + +
Sbjct: 37 PYFKGCRRVLDIGCGRGEFLELCKEEGIESIGV-DINEDMIKFCEG-------KFNVVKS 88
Query: 137 VGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
I+ K D + I + + E + + L+LC + + I+I
Sbjct: 89 DAIEYLKSLPDK-YLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVI 138
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-08
Identities = 21/117 (17%), Positives = 45/117 (38%), Gaps = 15/117 (12%)
Query: 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDK---IDLLEQSSKFIEQAKEEILKDCDKLDKC 134
S + L++G G + LA H + ID+ + I +A + K +
Sbjct: 48 SSGAVSNGLEIGCAAGAFT-EKLAPHCKRLTVIDV---MPRAIGRACQR-TKRWSHIS-- 100
Query: 135 YNVG-IQDFKPEDLNIKYDVIWIQWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKD 189
+ I F + +D+I + VL ++ D + ++ ++L G ++
Sbjct: 101 WAATDILQFSTAE---LFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 2e-08
Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 15/116 (12%)
Query: 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKC 134
+L++G+ G + L +HF+ I +E S + I A+ +L
Sbjct: 36 AFTPFFRPGNLLELGSFKGDFTSR-LQEHFNDITCVEASEEAISHAQG-------RLKDG 87
Query: 135 YNVGIQDFKPEDLNIKYDVIWIQWVLMFILD--EDIIKFL-NLCKQILNKNGIIII 187
F+ L +YD I VL +L+ +D + L + L + G + +
Sbjct: 88 ITYIHSRFEDAQLPRRYDNI----VLTHVLEHIDDPVALLKRINDDWLAEGGRLFL 139
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-08
Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 20/117 (17%)
Query: 76 KKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY 135
K VLD+G G + + ++ ++ +E + EQAKE K
Sbjct: 27 KHIKKEWKEVLDIGCSSGALGAAI-KENGTRVSGIEAFPEAAEQAKE----------KLD 75
Query: 136 NVGIQDFKPEDLNI---KYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNGIIII 187
+V + D + D+ ++D + + +L+ D + K + +NG+I+
Sbjct: 76 HVVLGDIETMDMPYEEEQFDCV----IFGDVLEHLFDPWAVIEKVKPYIKQNGVILA 128
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 3e-08
Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 84 RVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 141
+VLD+ G+G S L F+ +D+ S I +A+E ++ + VG D
Sbjct: 41 KVLDLACGVGGFSFLLEDYGFEVVGVDI---SEDMIRKAREYAKSRESNVE--FIVG--D 93
Query: 142 FKPEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE 198
L+ + +D + ++ ++ + +++L +G I+ +
Sbjct: 94 A--RKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPR 151
Query: 199 YDDE 202
+
Sbjct: 152 LKES 155
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 4e-08
Identities = 29/160 (18%), Positives = 63/160 (39%), Gaps = 16/160 (10%)
Query: 58 SDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFI 117
+D+D + + F+ +++ LD+ G G +++ L K + ++ S + +
Sbjct: 16 ADVDYKKWSDFIIEKC--VENNLVFDDYLDLACGTGNLTENLCPKFKN-TWAVDLSQEML 72
Query: 118 EQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW-VLMFILD-EDIIKFLNLC 175
+A+ + K + QD ++N K+D+I +I+D +D+ K+
Sbjct: 73 SEAENKFRSQGLKP----RLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAV 128
Query: 176 KQILNKNGIIII-------KDNVASGVKNEYDDEDSSVVR 208
L + G+ I V YDD++
Sbjct: 129 SNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYW 168
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 4e-08
Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 10/118 (8%)
Query: 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKC 134
+S+ K VLD GAG + + K +E S +++A+ ++ KL+
Sbjct: 18 CNESNLDK-TVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLN-- 74
Query: 135 YNVGIQDFKPEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189
+ G D L K ++ + + D+ + ++ K++L G+ I
Sbjct: 75 ISKG--DI--RKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINF 128
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 5e-08
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 18/113 (15%)
Query: 84 RVLDVGAGIGRISKYLLAKHFDK------IDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 137
++D G G G + +L + ID + +A+E D +
Sbjct: 25 HIVDYGCGYGYLGL-VLMPLLPEGSKYTGIDS---GETLLAEARELFRL--LPYDSEFLE 78
Query: 138 G-IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189
G + + D KYD+ L+ + L + K G II +
Sbjct: 79 GDATEIELND---KYDIAICHAFLLHM--TTPETMLQKMIHSVKKGGKIICFE 126
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 5e-08
Identities = 27/171 (15%), Positives = 53/171 (30%), Gaps = 29/171 (16%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDK 133
G +++DVG GIG IS +L + L + I+ E + D+
Sbjct: 190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILN----LPGA---IDLV-NENAAEKGVADR 241
Query: 134 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 193
+ + D E + D + +L ++ + G ++I D V
Sbjct: 242 MRGIAV-DIYKESYP-EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 299
Query: 194 GVKNEYDDEDSSVV------------RSLPQFCLLFSKANLKCVKSEKVTG 232
+N D S + + ++ + K V +
Sbjct: 300 DPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKYD 350
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 6e-08
Identities = 40/211 (18%), Positives = 86/211 (40%), Gaps = 33/211 (15%)
Query: 29 NRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDV 88
N + E + Y + G + IS ++ + + LS + + S +VLD+
Sbjct: 16 NNQYTDEGVKVYE--------FIFGENYISSGGLEATKKILSDIELNENS-----KVLDI 62
Query: 89 GAGIGRISKYLLAKHFDK----IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 144
G+G+G Y + + + ID+ S + A E + + +K D
Sbjct: 63 GSGLGGGCMY-INEKYGAHTHGIDI---CSNIVNMANERVSGN----NKI-IFEANDILT 113
Query: 145 EDL-NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------ 197
++ +D+I+ + ++ + E+ K C + L G ++I D A+ +N
Sbjct: 114 KEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFK 173
Query: 198 EYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228
EY + + ++ ++ + + N K V S+
Sbjct: 174 EYVKQRKYTLITVEEYADILTACNFKNVVSK 204
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 6e-08
Identities = 35/161 (21%), Positives = 55/161 (34%), Gaps = 32/161 (19%)
Query: 50 MLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKT--------------RVLDVGAGIGRI 95
M N +SI D D + L Q P T ++ D+G G G
Sbjct: 1 MSNNNTSIHDFDFSFICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQ 60
Query: 96 SKYLLAKHFDK----IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIK- 150
+ + LA + IDL FIE E +K ++L +
Sbjct: 61 TLF-LADYVKGQITGIDL---FPDFIEIFNENAVK--ANCADRVKGITGSM--DNLPFQN 112
Query: 151 --YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189
D+IW + + I E + +N + L K G I + +
Sbjct: 113 EELDLIWSEGAIYNIGFE---RGMNEWSKYLKKGGFIAVSE 150
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 7e-08
Identities = 32/135 (23%), Positives = 45/135 (33%), Gaps = 23/135 (17%)
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHFDK---IDLLEQSSKFIEQAKEEILKDCDKLDKCY 135
D + VLD+G G G Y K IDL S + + +AK + CY
Sbjct: 42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDL---SERMLTEAKRK----TTSPVVCY 94
Query: 136 NVGIQDFKPEDLNI---KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN-- 190
ED+ I Y+V+ L +I L +G I
Sbjct: 95 EQK----AIEDIAIEPDAYNVVLSSLALHYI--ASFDDICKKVYINLKSSGSFIFSVEHP 148
Query: 191 --VASGVKNEYDDED 203
A G ++ Y DE
Sbjct: 149 VFTADGRQDWYTDET 163
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 8e-08
Identities = 28/146 (19%), Positives = 66/146 (45%), Gaps = 18/146 (12%)
Query: 73 YCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLD 132
+ ++ +PGK R+ D+G G G + LA H++ + ++ S + +E A+E+ ++ +D
Sbjct: 26 WVLEQVEPGK-RIADIGCGTGTATLL-LADHYE-VTGVDLSEEMLEIAQEKAMETNRHVD 82
Query: 133 KCYNVG-IQDFKPEDLNIKYDVIWIQW-VLMFILD-EDIIKFLNLCKQILNKNGIIII-- 187
+ V +++ + + D I I L ++ D+ + + ++L G ++
Sbjct: 83 --FWVQDMRELELPE---PVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV 137
Query: 188 -----KDNVASGVKNEYDDEDSSVVR 208
+ + +G E SS +
Sbjct: 138 HSPYKMETLFNGKTYATHAEQSSYIW 163
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 1e-07
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 15/112 (13%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 137
P ++LD G G GRI YL + D DL I+ AK+ D + + V
Sbjct: 45 PRGAKILDAGCGQGRIGGYLSKQGHDVLGTDL---DPILIDYAKQ----DFPEAR--WVV 95
Query: 138 G-IQDFKPEDLNIKYDVIWIQWVLM-FILDEDIIKFLNLCKQILNKNGIIII 187
G + + + +D+I +M F+ ++ L + L +G +I
Sbjct: 96 GDLSVDQISE--TDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVI 145
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 1e-07
Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 14/140 (10%)
Query: 60 LDIQTSNQFLSSLY-------CQKKSDPGKTRVLDVGAGIGRISKYLLA-KHFDKIDLLE 111
++ + + + SL RV+D+G G G + K LL F++I ++
Sbjct: 1 MEEEAAVEKPISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVD 60
Query: 112 QSSKFIEQAKE----EILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDED 167
S + +E A+E L G ++ + + YD + V+ +
Sbjct: 61 VSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFH-GYDAATVIEVIEHLDLSR 119
Query: 168 IIKFLNLCKQILNKNGIIII 187
+ F + + + I+I+
Sbjct: 120 LGAFERVLFEFA-QPKIVIV 138
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 2e-07
Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 21/110 (19%)
Query: 84 RVLDVGAGIGRISKYLLAKHFDK-----IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 138
D+G G G ++ LL + ID +E+A + L + + +
Sbjct: 36 NGYDLGCGPGNSTE-LLTDRYGVNVITGIDS---DDDMLEKAADR-LPNTN-----FGKA 85
Query: 139 -IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
+ +KP K D+++ V ++ D + L+ L G++ +
Sbjct: 86 DLATWKPAQ---KADLLYANAVFQWV--PDHLAVLSQLMDQLESGGVLAV 130
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-07
Identities = 37/220 (16%), Positives = 71/220 (32%), Gaps = 44/220 (20%)
Query: 29 NRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDV 88
+ + + + D ++ S + ++ + ++ VLDV
Sbjct: 9 KFNWHESAEKKW-------DSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEA-EVLDV 60
Query: 89 GAGIGRISKYLLAKHFDK---IDLLEQSSKFIEQAKEEILK--------DCDKLDKCYNV 137
G G G + Y L++ K +D+ S I++ KE D L
Sbjct: 61 GCGDGYGT-YKLSRTGYKAVGVDI---SEVMIQKGKERGEGPDLSFIKGDLSSL------ 110
Query: 138 GIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN 197
F+ E +++ I L + E+ ++ LN K++L +G I +
Sbjct: 111 ---PFENE----QFEAIMAINSLEWT--EEPLRALNEIKRVLKSDGYACIAILGPTAKPR 161
Query: 198 E------YDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVT 231
E Y + +F L + K V V
Sbjct: 162 ENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVY 201
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 3e-07
Identities = 16/115 (13%), Positives = 42/115 (36%), Gaps = 7/115 (6%)
Query: 79 DPGKTRVLDVGAGIGRISKYLLA--KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY- 135
+ + ++D G G G + LL I ++ S K + +A + + +K
Sbjct: 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK 778
Query: 136 NVGIQDFKPEDLNI---KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
+ + D + + D+ V+ + ++ +F + ++I+
Sbjct: 779 SATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLF-HPKLLIV 832
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 4e-07
Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 12/116 (10%)
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHFDK----IDLLEQSSKFIEQAKE----EILKDCDK 130
+V+D+G G G + LL + +D+ S +E+AK+ + L + +
Sbjct: 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDV---SYSVLERAKDRLKIDRLPEMQR 83
Query: 131 LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIII 186
++ + + YD + V+ + + + F + + +I+
Sbjct: 84 KRISLFQSSLVYRDKRFS-GYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIV 138
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 4e-07
Identities = 18/110 (16%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 138
PG+ +LD+G G G++++ +A+ ++ + ++ IE+A++ ++V
Sbjct: 56 QPGE-FILDLGCGTGQLTE-KIAQSGAEVLGTDNAATMIEKARQN-YPHLH-----FDVA 107
Query: 139 -IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
++F+ + D ++ +L ++ + + + Q L G +
Sbjct: 108 DARNFRVDK---PLDAVFSNAMLHWVKEPE--AAIASIHQALKSGGRFVA 152
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 5e-07
Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 16/122 (13%)
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLD-KCY 135
G RVLDV G G S L+ + F +D S K ++ A +E + +
Sbjct: 55 QHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDA---SDKMLKYALKERWNRRKEPAFDKW 111
Query: 136 NVGIQDFKPEDLNI----KYDVIWIQW-VLMFILD-----EDIIKFLNLCKQILNKNGII 185
+ ++ D ++ +D + + D + L ++ G++
Sbjct: 112 VIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLL 171
Query: 186 II 187
+I
Sbjct: 172 VI 173
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 8e-07
Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 24/133 (18%)
Query: 60 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQ 119
+ ++ ++L +++ KK ++D G G G KY L + K+ ++ + +++
Sbjct: 1 MSLERPEEYLPNIFEGKKG-----VIVDYGCGNGFYCKY-LLEFATKLYCIDINVIALKE 54
Query: 120 AKEEILKDCDKLDKCYNVGIQDFKPEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCK 176
KE K D + + I D I + +D ++ K
Sbjct: 55 VKE-------KFDSVITLS------DPKEIPDNSVDFILFANSFHDM--DDKQHVISEVK 99
Query: 177 QILNKNGIIIIKD 189
+IL +G +II D
Sbjct: 100 RILKDDGRVIIID 112
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 1e-06
Identities = 23/170 (13%), Positives = 58/170 (34%), Gaps = 34/170 (20%)
Query: 84 RVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 136
+DVG G G ++K +L D E S + A + L ++
Sbjct: 170 SFVDVGGGSGELTKAILQAEPSARGVMLD----REGS---LGVA-RDNLSSLLAGERVSL 221
Query: 137 VGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK 196
VG D +++ D+ + ++ + + ++ L C++ + +G +++ +
Sbjct: 222 VG-GDML-QEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTI---- 275
Query: 197 NEYDDEDSSVV-------------RSLPQFCLLFSKANLKCVKSEKVTGM 233
+ + SV+ R+ + L + + +
Sbjct: 276 SASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLPME 325
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 1e-06
Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 19/122 (15%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG- 138
+ R+L +G G +S L F + ++ SS + + +
Sbjct: 41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQA---CYAHVPQLRWETMD 97
Query: 139 IQDFKPEDLNIKYDVIWIQWVLMFILD-------------EDIIKFLNLCKQILNKNGII 185
++ +DV+ + L +L + + L+ ++L G
Sbjct: 98 VRKLDFPSA--SFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRF 155
Query: 186 II 187
I
Sbjct: 156 IS 157
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-06
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 23/152 (15%)
Query: 53 GYSSISDLDIQTSNQFL-SSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDL 109
GYS L + + L L+ PG +VL+ G GIG + LAK+ +I
Sbjct: 9 GYSEREALRLSEQAETLEKLLHHDTVYPPGA-KVLEAGCGIGAQTVI-LAKNNPDAEITS 66
Query: 110 LEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ-------DFKPEDLNIKYDVIWIQWVLMF 162
++ S + +E+A+E K+ K NV F + +D I++ +VL
Sbjct: 67 IDISPESLEKARENTEKNGIK-----NVKFLQANIFSLPF-EDS---SFDHIFVCFVLEH 117
Query: 163 ILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 194
+ + + L K++L G I + +
Sbjct: 118 L--QSPEEALKSLKKVLKPGGTITVIEGDHGS 147
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-06
Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 20/117 (17%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDK---IDLLEQSSKFIEQAKEEILKDCDKLDKCYN 136
G R++D+G G G ++ +DL S K + +A+ Y
Sbjct: 43 GGL-RIVDLGCGFGWFCRWAHEHGASYVLGLDL---SEKMLARARAA----GPDTGITYE 94
Query: 137 VGIQDFKPEDLNI---KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190
D + L++ +D+ + L ++ ED+ + Q L+ G +
Sbjct: 95 RA--DL--DKLHLPQDSFDLAYSSLALHYV--EDVARLFRTVHQALSPGGHFVFSTE 145
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-06
Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 12/116 (10%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDK-----IDLLEQSSKFIEQAKEEILKDCDKLDKC 134
PG V V G L ID + ++ A L
Sbjct: 118 PGC-VVASVPCGWMSELLALDYSACPGVQLVGIDY---DPEALDGATRLAAG--HALAGQ 171
Query: 135 YNVGIQDFKPEDLNIKYDVIWIQWVLMFILDED-IIKFLNLCKQILNKNGIIIIKD 189
+ QD D YD++ + ++ D+ + + Q L G ++
Sbjct: 172 ITLHRQDAWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 32/177 (18%), Positives = 52/177 (29%), Gaps = 38/177 (21%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDK 133
VLDVG G G + + + + L E+A+ D D+
Sbjct: 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVE----LAGP---AERAR-RRFADAGLADR 233
Query: 134 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 193
DF + L + DV+ + +VL+ DED + L C + L G +++ D
Sbjct: 234 VTVAE-GDFF-KPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADV 291
Query: 194 GVKNEYDDEDSSVV----------------RSLPQFCLLFSKANLKCVKSEKVTGMP 234
D R+ + L A L
Sbjct: 292 E-----GDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTT 343
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 2e-06
Identities = 32/176 (18%), Positives = 66/176 (37%), Gaps = 26/176 (14%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 139
G + ++DVG G GR + +++K+ K I +++++ L +VG
Sbjct: 208 EGISTLVDVGGGSGRNLELIISKYP--------LIKGINFDLPQVIENAPPLSGIEHVGG 259
Query: 140 QDFKPEDLNI-KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE 198
F + + D + ++ V DE I+FL+ C + L+ NG +II + + N
Sbjct: 260 DMFAS----VPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNT 315
Query: 199 YDDEDSSVV-------------RSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIY 241
++ R+ Q+ L + + + + Y
Sbjct: 316 SEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFY 371
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 3e-06
Identities = 21/166 (12%), Positives = 52/166 (31%), Gaps = 32/166 (19%)
Query: 36 VTEYYSNVPPTIDGMLNGYSSISDLDI-----QTSNQFLSSLYCQKKSDP-----GKTRV 85
+T + V + + S+ + + + L L C+ + P R
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 86 LD-VGA----GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY-NVGI 139
L + G+ + KH + L + + + K + + +
Sbjct: 330 LSIIAESIRDGLATWDNW---KHVNCDKLTTIIESSLNVLEPAEYR------KMFDRLSV 380
Query: 140 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLC--KQILNKNG 183
F P +I ++ + W + + D++ +N ++ K
Sbjct: 381 --F-PPSAHIPTILLSLIWFDV--IKSDVMVVVNKLHKYSLVEKQP 421
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 34/181 (18%), Positives = 64/181 (35%), Gaps = 43/181 (23%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDK 133
G +D+G G G + +L + E+A+E +L D+
Sbjct: 202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLE----RPPV---AEEARE-LLTGRGLADR 253
Query: 134 CYNVGIQDF---KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190
C + DF P+ DV I+ VL D+D+++ L + + +++ DN
Sbjct: 254 CEILP-GDFFETIPDG----ADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDN 308
Query: 191 VASGVKNEYDDEDSSVV--------------RSLPQFCLLFSKANLKCVKSEKVTGMPKS 236
+ + +S + RS +F L K+ L+ +S P
Sbjct: 309 LID------ERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVR 362
Query: 237 L 237
+
Sbjct: 363 I 363
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 4e-06
Identities = 33/189 (17%), Positives = 67/189 (35%), Gaps = 24/189 (12%)
Query: 53 GYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDK----ID 108
I + ++T S L + LD+GAG G +++ L + F ++
Sbjct: 55 DQDEIREASLRTDEWLASELAMTGVLQRQA-KGLDLGAGYGGAARF-LVRKFGVSIDCLN 112
Query: 109 LLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI---KYDVIWIQWVLMFILD 165
+ + ++ +E + L V F ++ YD IW Q + D
Sbjct: 113 I---APVQNKRNEEYNNQ--AGLADNITVKYGSF--LEIPCEDNSYDFIWSQDAFLHSPD 165
Query: 166 EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE------YDDEDSSVVRSLPQFCLLFSK 219
+ K C ++L G++ I D + ++ D + SL + L +
Sbjct: 166 KL--KVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKE 223
Query: 220 ANLKCVKSE 228
L +++
Sbjct: 224 CGLVTLRTF 232
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 6e-06
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 13/110 (11%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDK--IDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 137
+ RVLD+G G G + + L + + +D ++ A+ L +
Sbjct: 52 QPE-RVLDLGCGEGWLLRALADRGIEAVGVDG---DRTLVDAARAA-GAGEVHLASYAQL 106
Query: 138 GIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
YD+I + L+ +DII+ L+ + +L G ++I
Sbjct: 107 AEAKVPVGK---DYDLICANFALLH---QDIIELLSAMRTLLVPGGALVI 150
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 6e-06
Identities = 18/104 (17%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 84 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 143
++L + G GR + +L + ++ + ++QSS + +AK+ + K+ + DF
Sbjct: 32 KILCLAEGEGRNACFLASLGYE-VTAVDQSSVGLAKAKQLAQEKGVKIT-TVQSNLADFD 89
Query: 144 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
++ I + + + Q L G+ I+
Sbjct: 90 IVAD--AWEGIV--SIFCHLPSSLRQQLYPKVYQGLKPGGVFIL 129
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 8e-06
Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 29/170 (17%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDK 133
VLDVG G G + + + + + + ++ A+ LKD D+
Sbjct: 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLE----MAGT---VDTAR-SYLKDEGLSDR 234
Query: 134 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 193
V DF E L K D I + +VL+ D D ++ L C + L G I+I +
Sbjct: 235 VDVVE-GDFF-EPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDD- 291
Query: 194 GVKNEYDDEDSSV-----------VRSLPQFCLLFSKANLKCVKSEKVTG 232
+N ++++ + + +R+ ++ L + A L + ++
Sbjct: 292 LHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPS 341
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 9e-06
Identities = 32/176 (18%), Positives = 52/176 (29%), Gaps = 43/176 (24%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDK 133
V+DVG G G + LL H D L+ A D +
Sbjct: 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLD----LQGP---ASAAHRR-FLDTGLSGR 220
Query: 134 CYNVGIQDF---KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190
V F P + VL D + L C + G++++ +
Sbjct: 221 AQVVV-GSFFDPLPAG----AGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEA 275
Query: 191 VASGVKNEYDDEDSSVV-------------RSLPQFCLLFSKANLKCVKSEKVTGM 233
VA DE + RSL + L ++A L + ++ +
Sbjct: 276 VA-------GDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPISYV 324
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 24/165 (14%), Positives = 55/165 (33%), Gaps = 21/165 (12%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 139
+ VLDV G G ++ A K+ + + ++ A+ I + V
Sbjct: 37 GNE-EVLDVATGGGHVA-NAFAPFVKKVVAFDLTEDILKVARAFIEG-----NGHQQVEY 89
Query: 140 QDFKPEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV- 195
E + + ++ + + F++ ++L K G +++ DN A
Sbjct: 90 VQGDAEQMPFTDERFHIVTCRIAAHHF--PNPASFVSEAYRVLKKGGQLLLVDNSAPEND 147
Query: 196 --KNEYD----DEDSSVVRSLP--QFCLLFSKANLKCVKSEKVTG 232
Y+ + D S R+ + + +A + +
Sbjct: 148 AFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHK 192
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 2e-05
Identities = 30/210 (14%), Positives = 60/210 (28%), Gaps = 39/210 (18%)
Query: 26 KDGNRSHYSEVTEYYSNVPPTIDGMLNG------------YSSISDLDIQTSNQFLSSLY 73
S V +YY + + ++D+ + +F
Sbjct: 15 GGSTPSIRDHVADYYGKTLQSSADLKTSACKLAAAVPESHRKILADIADEVLEKFYGCGS 74
Query: 74 CQKKSD--PGKTRVLDVGAGIGRISKYLLAKHFDK------IDLLEQSSKFIEQAKEEIL 125
G VLD+G G GR YL +K + +D+ +E A++ +
Sbjct: 75 TLPADGSLEGA-TVLDLGCGTGRDV-YLASKLVGEHGKVIGVDM---LDNQLEVARKYVE 129
Query: 126 KDCDKLDKCYNVGIQDFKPEDL------------NIKYDVIWIQWVLMFILDEDIIKFLN 173
+K + F + + D++ V ++
Sbjct: 130 YHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKL--ALFK 187
Query: 174 LCKQILNKNGIIIIKDNVASGVKNEYDDED 203
++L G + D A +E +D
Sbjct: 188 EIHRVLRDGGELYFSDVYADRRLSEAAQQD 217
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 3e-05
Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 17/120 (14%)
Query: 79 DPGKTRVLDVGAGIGRISKYL--LAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 136
D + ++DVG G G + + K F++I + S+ I+ A+ D N
Sbjct: 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYK---N 90
Query: 137 VGIQDFKPEDLNI---------KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
V + +D K D+I + D KF L K+G I I
Sbjct: 91 VSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAI 147
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-05
Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 21/162 (12%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 139
RVLD+GAG G + + + + ++ + + +E A + ++ NV
Sbjct: 21 AEH-RVLDIGAGAGHTA-LAFSPYVQECIGVDATKEMVEVASSFAQE--KGVE---NVRF 73
Query: 140 QDFKPEDL---NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS--- 193
Q E L + +D+I ++ D+ K + ++L ++G ++ D+ A
Sbjct: 74 QQGTAESLPFPDDSFDIITCRYAAHHF--SDVRKAVREVARVLKQDGRFLLVDHYAPEDP 131
Query: 194 GVKNEYDD----EDSSVVR--SLPQFCLLFSKANLKCVKSEK 229
+ + D S VR SL ++ +FS L +K
Sbjct: 132 VLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQK 173
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} Length = 317 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 5e-05
Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 31/132 (23%)
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEE-ILKDCDKLDKCY 135
D K R+ +G G +++Y + + ++E ++ ++E + ++
Sbjct: 87 DASKLRITHLGGGACTMARYFAD-VYPQSRNTVVELDAELARLSREWFDIPRAPRV---- 141
Query: 136 NVGIQD---FKPEDLNIKYDVIWIQWVLMFILD----------EDIIKFLNLCKQILNKN 182
+ + D DVI I D ++F C + L
Sbjct: 142 KIRVDDARMVAESFTPASRDVI--------IRDVFAGAITPQNFTTVEFFEHCHRGLAPG 193
Query: 183 GIIIIKDNVASG 194
G+ + N
Sbjct: 194 GLYVA--NCGDH 203
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 6e-05
Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 17/114 (14%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDK----IDLLEQSSKFIEQAKEEILKD--CDKLDK 133
PG TR+LD+G+G G + A+ ID+ SS F QAK + +++
Sbjct: 36 PG-TRILDLGSGSGEMLCT-WARDHGITGTGIDM---SSLFTAQAKRRAEELGVSERVH- 89
Query: 134 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
D N K DV V + L Q L GI++I
Sbjct: 90 ---FIHNDAAGYVANEKCDVAAC--VGATWIAGGFAGAEELLAQSLKPGGIMLI 138
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 7e-05
Identities = 28/167 (16%), Positives = 51/167 (30%), Gaps = 27/167 (16%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 140
G ++DVG G+G + A + K + ++ + + +VG
Sbjct: 201 GLGTLVDVGGGVGATVAAIAAHYPT--------IKGVNFDLPHVISEAPQFPGVTHVGGD 252
Query: 141 DFKPEDLNI-KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY 199
FK + D I ++W+L D+ L C L +G +++ +
Sbjct: 253 MFKE----VPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEAN 308
Query: 200 DDEDSSVV--------------RSLPQFCLLFSKANLKCVKSEKVTG 232
R +F L A VKS +
Sbjct: 309 PSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYA 355
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 39/213 (18%), Positives = 69/213 (32%), Gaps = 43/213 (20%)
Query: 26 KDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRV 85
D H+ + + + + +LS L K P R
Sbjct: 3 SDKIHHHHHHMWHIFERFVNEYERWFLVHR----------FAYLSELQAVKCLLPEG-RG 51
Query: 86 LDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK----DCDKLDKCYNVGIQD 141
+++G G GR A +E S + E A++ + + L
Sbjct: 52 VEIGVGTGR-----FAVPLKIKIGVEPSERMAEIARKRGVFVLKGTAENL---------P 97
Query: 142 FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD-NVASGVKNEY- 199
K E +D + + F+ +D + L +IL K G +I+ + S + EY
Sbjct: 98 LKDE----SFDFALMVTTICFV--DDPERALKEAYRILKKGGYLIVGIVDRESFLGREYE 151
Query: 200 -DDEDSSVVR-----SLPQFCLLFSKANLKCVK 226
+ E S + S + L KA + K
Sbjct: 152 KNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 184
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 30/117 (25%), Positives = 41/117 (35%), Gaps = 18/117 (15%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDK----IDLLEQSSKFIEQAKEEILKDCDKLDKCY 135
G RVLDVG GIG+ + LA D I + S + QA L
Sbjct: 61 SG-DRVLDVGCGIGKPAVR-LATARDVRVTGISI---SRPQVNQANARATA--AGLANRV 113
Query: 136 NVGIQDFKPEDLNI---KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189
D DL +D +W L + D + L ++L G + I D
Sbjct: 114 TFSYADA--MDLPFEDASFDAVWALESLHHMPDRG--RALREMARVLRPGGTVAIAD 166
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 29/182 (15%), Positives = 62/182 (34%), Gaps = 40/182 (21%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDK 133
V DVG G G +L +H D + + + + +
Sbjct: 184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLD----RAEV---VARHRLDAPDVAG---- 232
Query: 134 CYNVGIQ--DF---KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188
+ DF P DV ++ +L DED ++ L C++++ +G +++
Sbjct: 233 --RWKVVEGDFLREVP-----HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVI 285
Query: 189 DNVASGVKNEYDDEDSSVV---------RSLPQFCLLFSKANLKCVKSEKVTGMPKSLFK 239
D V + + ++ + R+ + LF+ A L+ + + S+
Sbjct: 286 DAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVGTSS-VMSIAV 344
Query: 240 IY 241
Sbjct: 345 GV 346
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 1e-04
Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 138
G+ R + +G G ++ LL+ + +++++E E +++ I + +D NV
Sbjct: 122 RGE-RAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVI--EGLGVDGV-NVI 177
Query: 139 IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189
D D ++DV+ + L E + + ++ II +
Sbjct: 178 TGDETVIDGL-EFDVLMVAA-----LAEPKRRVFRNIHRYVDTETRIIYRT 222
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 1e-04
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE 122
P RVL+ G G G + + + S + ++ A+
Sbjct: 48 PQT-RVLEAGCGHGPDA-ARFGPQAARWAAYDFSPELLKLARA 88
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 30/167 (17%), Positives = 58/167 (34%), Gaps = 27/167 (16%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 140
G T ++DVG G G ++ ++AK+ I +++D ++G
Sbjct: 203 GLTTIVDVGGGTGAVASMIVAKYPS--------INAINFDLPHVIQDAPAFSGVEHLGGD 254
Query: 141 DFKPEDLNI-KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY 199
F + K D I+I+W+ DE +K L C L +G +I+ + + +
Sbjct: 255 MFDG----VPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPS 310
Query: 200 DDEDSSVV--------------RSLPQFCLLFSKANLKCVKSEKVTG 232
+ R+ +F L + + K
Sbjct: 311 IATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAF 357
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 4e-04
Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 18/146 (12%)
Query: 54 YSSISDLDIQTS--------NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD 105
+SS I + +Y K VLDVG G G +S AK
Sbjct: 30 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKV-VLDVGCGTGILS-MFAAKAGA 87
Query: 106 KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI---KYDVIWIQWVLMF 162
K L S+ + QA + I +KL+ + I+ K E++++ K DVI +W+ F
Sbjct: 88 KKVLGVDQSEILYQAMDIIRL--NKLEDTITL-IKG-KIEEVHLPVEKVDVIISEWMGYF 143
Query: 163 ILDEDIIK-FLNLCKQILNKNGIIII 187
+L E ++ L + L K G +
Sbjct: 144 LLFESMLDSVLYAKNKYLAKGGSVYP 169
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 4e-04
Identities = 34/169 (20%), Positives = 65/169 (38%), Gaps = 28/169 (16%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 140
G ++DVG G G +K + K I + +++++ + VG
Sbjct: 188 GLESIVDVGGGTGTTAKIICETFPK--------LKCIVFDRPQVVENLSGSNNLTYVGGD 239
Query: 141 DFKPEDLNI-KYDVIWIQWVLMFILDEDIIKFLNLCKQIL---NKNGIIIIKDNVASGVK 196
F I D + ++++L D+D ++ L CK+ + K G + I D V K
Sbjct: 240 MFTS----IPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKK 295
Query: 197 NEYDDEDSSVV------------RSLPQFCLLFSKANLKCVKSEKVTGM 233
+E ++ R+ ++ LF +A + K +TG
Sbjct: 296 DENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPLTGF 344
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 4e-04
Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 11/123 (8%)
Query: 76 KKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKC 134
+ +D+G+G G +S LAK D I L+ S E A + I +
Sbjct: 38 NRFGITAGTCIDIGSGPGALS-IALAKQSDFSIRALDFSKHMNEIALKNI----ADANLN 92
Query: 135 YNVGIQDFKPEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191
+ I ++ I+ D+I + + F ED+ +IL G I
Sbjct: 93 DRIQIVQGDVHNIPIEDNYADLIVSRGSVFFW--EDVATAFREIYRILKSGGKTYIGGGF 150
Query: 192 ASG 194
+
Sbjct: 151 GNK 153
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 5e-04
Identities = 28/145 (19%), Positives = 47/145 (32%), Gaps = 12/145 (8%)
Query: 84 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEI-LKDCDKLDKCYNVGIQDF 142
V+D+ AGIG +S + K+ +E+ + E I L + YN D
Sbjct: 128 LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYN---MDN 184
Query: 143 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDE 202
+ D +LM +F+ I II + V K +
Sbjct: 185 RDFPGENIADR-----ILM-GYVVRTHEFIPKALSIAKDGAIIHYHNTVPE--KLMPREP 236
Query: 203 DSSVVRSLPQFCLLFSKANLKCVKS 227
+ R ++ K N +K
Sbjct: 237 FETFKRITKEYGYDVEKLNELKIKR 261
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 5e-04
Identities = 30/168 (17%), Positives = 55/168 (32%), Gaps = 27/168 (16%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 140
G ++DVG G G ++K + + + + + VG
Sbjct: 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN--------ENLNFVGGD 244
Query: 141 DFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQ---ILNKNGIIIIKDNVASGVKN 197
FK D + ++WVL DE +K L K+ K+G +II D +
Sbjct: 245 MFKSIP---SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSD 301
Query: 198 EYDDEDSSVV-------------RSLPQFCLLFSKANLKCVKSEKVTG 232
+ + + R+ ++ L A K ++G
Sbjct: 302 DRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISG 349
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 256 | |||
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.97 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.96 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.91 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.91 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.9 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.9 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.9 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.89 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.89 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.89 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.88 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.88 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.88 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.88 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.88 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.87 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.87 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.87 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.87 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.87 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.87 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.87 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.86 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.86 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.86 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.86 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.86 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.86 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.86 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.86 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.86 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.86 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.85 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.85 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.84 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.84 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.84 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.84 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.84 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.83 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.83 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.83 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.83 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.83 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.82 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.82 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.82 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.82 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.82 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.82 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.82 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.82 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.82 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.81 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.81 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.81 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.81 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.81 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.81 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.81 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.81 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.81 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.81 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.8 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.8 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.8 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.79 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.79 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.79 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.79 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.79 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.78 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.78 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.78 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.78 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.78 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.78 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.77 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.77 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.77 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.77 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.77 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.77 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.76 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.76 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.76 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.76 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.76 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.75 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.75 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.74 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.74 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.74 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.74 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.74 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.73 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.73 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.73 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.73 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.73 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.73 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.73 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.73 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.72 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.72 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.71 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.71 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.71 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.71 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.7 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.7 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.7 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.7 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.69 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.69 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.69 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.69 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.68 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.68 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.68 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.68 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.68 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.68 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.68 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.68 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.68 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.68 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.68 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.67 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.67 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.67 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.67 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.66 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.66 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.66 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.66 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.66 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.66 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.65 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.65 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.65 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.65 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.64 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.64 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.63 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.63 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.63 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.63 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.62 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.62 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.62 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.62 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.61 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.61 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.61 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.61 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.61 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.6 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.6 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.6 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.6 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.6 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.6 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.6 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.6 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.59 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.59 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.59 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.59 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.59 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.58 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.58 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.58 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.58 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.57 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.57 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.57 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.56 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.56 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.56 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.55 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.55 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.55 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.55 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.55 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.54 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.54 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.53 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.53 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.53 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.53 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.53 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.52 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.52 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.51 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.51 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.51 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.51 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.51 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.51 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.5 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.49 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.49 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.49 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.49 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.49 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.48 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.48 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.48 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.48 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.48 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.48 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.48 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.48 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.47 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.47 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.47 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.47 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.47 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.46 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.46 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.46 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.46 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.46 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.45 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.45 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.45 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.44 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.44 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.44 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.44 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.44 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.44 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.43 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.43 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.42 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.41 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.39 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.37 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.37 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.36 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.36 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.33 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.33 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.31 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.29 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.29 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.29 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.27 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.25 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.25 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.22 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.22 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.22 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.16 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.16 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.14 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.12 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.12 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.12 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 99.11 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.11 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.09 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.04 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 99.02 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 99.02 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.99 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.98 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.97 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.96 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.95 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.94 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.88 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.88 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.86 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.86 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.85 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.84 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.81 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.8 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.77 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.76 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.71 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.65 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.64 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.62 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.6 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.56 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.55 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.39 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.34 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.28 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.16 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.16 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.13 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.05 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 98.01 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.9 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.89 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.85 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.83 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.74 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.67 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.57 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.55 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.53 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 97.47 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.36 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 97.21 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 97.14 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.1 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.05 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 97.02 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.56 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.49 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.48 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 96.46 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 96.43 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 96.38 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.36 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.2 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.99 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.77 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.72 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 95.71 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.62 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 95.58 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 95.41 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 95.35 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 95.31 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.21 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.13 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 94.98 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.96 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.87 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 94.82 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.78 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 94.78 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 94.75 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.72 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 94.72 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 94.61 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.6 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 94.44 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.43 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 94.43 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 94.42 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 94.34 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.32 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 94.3 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 94.29 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 94.25 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 94.24 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 94.23 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 94.11 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 94.11 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 94.05 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 94.04 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.01 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 94.0 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 93.97 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 93.96 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 93.85 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 93.82 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 93.79 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.75 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 93.73 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 93.72 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 93.69 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 93.66 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 93.51 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 93.45 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 93.44 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 93.34 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 93.31 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 93.26 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 93.19 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 93.19 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 93.11 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 93.01 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 92.94 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 92.9 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 92.8 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 92.76 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 92.73 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 92.64 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 92.62 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 92.61 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 92.61 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 92.52 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 92.5 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 92.5 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 92.47 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 92.46 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 92.37 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 92.34 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 92.29 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 92.29 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 92.23 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 92.14 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 92.12 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 92.1 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 92.07 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 92.05 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 92.04 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 92.01 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 91.99 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 91.92 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 91.91 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 91.91 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 91.8 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 91.76 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 91.59 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 91.51 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 91.5 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 91.47 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 91.39 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 91.34 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 91.24 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 91.22 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 91.09 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 91.02 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 90.93 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 90.91 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 90.89 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 90.84 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 90.76 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 90.73 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 90.69 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 90.68 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.63 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 90.59 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 90.59 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 90.56 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 90.56 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 90.53 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 90.52 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 90.42 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 90.37 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 90.37 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 90.31 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 90.25 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 90.19 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 90.1 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 90.04 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 90.0 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 89.8 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 89.76 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 89.75 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 89.72 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 89.56 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 89.55 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 89.46 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 89.45 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 89.39 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 89.27 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 89.27 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 89.19 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 89.11 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 89.04 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 88.98 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 88.9 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 88.9 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 88.87 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 88.81 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 88.66 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 88.65 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 88.6 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 88.3 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 87.96 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 87.96 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 87.93 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 87.89 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 87.89 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 87.89 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 87.88 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 87.83 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 87.66 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 87.47 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 87.33 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 87.29 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 87.25 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 87.24 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 87.04 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 87.03 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 86.93 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 86.91 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 86.85 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 86.84 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 86.82 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 86.82 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 86.8 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 86.45 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 86.34 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 86.32 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 86.22 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 86.19 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 86.03 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 86.02 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 85.79 |
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=201.86 Aligned_cols=217 Identities=39% Similarity=0.706 Sum_probs=178.0
Q ss_pred cCCccchhhhhhhhccCCCCcccccccCCCCccccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC
Q psy8370 26 KDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD 105 (256)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~ 105 (256)
..+...||+...+||+..+...++++++|..++..+......++..+........++.+|||||||+|.++..++..+..
T Consensus 24 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~ 103 (241)
T 2ex4_A 24 IEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFR 103 (241)
T ss_dssp CSCHHHHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTTCS
T ss_pred ccccchhHHHHHHHHhcCCccccccccCCCCcchhhHHhHHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhcCC
Confidence 45667899999999999999888888888776666666677778777722223446889999999999999998877766
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcE
Q psy8370 106 KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGI 184 (256)
Q Consensus 106 ~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 184 (256)
+|+++|+|+.+++.++++....+ .++ .+...|+.+++...+ +||+|++..+++|++++....+++++.++|+|||.
T Consensus 104 ~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~d~~~~~~~~~--~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 180 (241)
T 2ex4_A 104 EVDMVDITEDFLVQAKTYLGEEGKRVR-NYFCCGLQDFTPEPD--SYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGI 180 (241)
T ss_dssp EEEEEESCHHHHHHHHHHTGGGGGGEE-EEEECCGGGCCCCSS--CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHhhhcCCceE-EEEEcChhhcCCCCC--CEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeE
Confidence 99999999999999999887642 345 889999988876554 89999999999999887778999999999999999
Q ss_pred EEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCcceeeeEEEec
Q psy8370 185 IIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246 (256)
Q Consensus 185 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~l~ 246 (256)
+++.++.... ...+......+.++.+++.++++++||+++.......+|...+++.+++++
T Consensus 181 l~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~v~~~~l~ 241 (241)
T 2ex4_A 181 IVIKDNMAQE-GVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR 241 (241)
T ss_dssp EEEEEEEBSS-SEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCSCCTTSCEEEEEEEC
T ss_pred EEEEEccCCC-cceecccCCcccCCHHHHHHHHHHcCCeEEEeeecCCCcchhhhhhhheeC
Confidence 9998765543 222333455666799999999999999999999889999999999999875
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=192.91 Aligned_cols=208 Identities=35% Similarity=0.583 Sum_probs=166.9
Q ss_pred cchhhhhhhhccCCCCcccccccCCCCccccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEE
Q psy8370 30 RSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDL 109 (256)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~ 109 (256)
..||+...++|+......+++.+.+......... ....++ ......++.+|||||||+|.++..++..+..+|++
T Consensus 47 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l-~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~ 121 (254)
T 1xtp_A 47 KGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIE----GSRNFI-ASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDL 121 (254)
T ss_dssp TCHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHH----HHHHHH-HTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEE
T ss_pred hhhhhhhhhHHhcCCccccceecCcCccCHHHHH----HHHHHH-HhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEE
Confidence 3588888999999888887777776554443333 333444 33345678999999999999999998887668999
Q ss_pred EeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 110 LEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 110 vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+|+.+++.++++.... .++ .+...|+.+++.... +||+|++..+++|+++++...++++++++|+|||.+++.+
T Consensus 122 vD~s~~~~~~a~~~~~~~-~~~-~~~~~d~~~~~~~~~--~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 197 (254)
T 1xtp_A 122 LEPVKHMLEEAKRELAGM-PVG-KFILASMETATLPPN--TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE 197 (254)
T ss_dssp EESCHHHHHHHHHHTTTS-SEE-EEEESCGGGCCCCSS--CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCHHHHHHHHHHhccC-Cce-EEEEccHHHCCCCCC--CeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 999999999999987654 356 889999988765555 8999999999999988788899999999999999999987
Q ss_pred cccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCcceeeeEEEec
Q psy8370 190 NVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246 (256)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~l~ 246 (256)
+...............+.++.+++.++++++||+++.......+|...+++.+++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~ 254 (254)
T 1xtp_A 198 NCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEEWPTDLFPLKMYALK 254 (254)
T ss_dssp EBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECTTCCTTSCCEEEEEEC
T ss_pred cCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeecCCCCchhheEEEEEeC
Confidence 644333222333445567899999999999999999999889999999999999874
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=158.80 Aligned_cols=154 Identities=15% Similarity=0.213 Sum_probs=125.1
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~ 145 (256)
..++..+. ...+.+|||+|||+|.++..++..+. +++|+|+|+.+++.++++. .++ .+..+|+.+++..
T Consensus 31 ~~~l~~~~-----~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~----~~~-~~~~~d~~~~~~~ 99 (203)
T 3h2b_A 31 RVLIEPWA-----TGVDGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH----PSV-TFHHGTITDLSDS 99 (203)
T ss_dssp HHHHHHHH-----HHCCSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC----TTS-EEECCCGGGGGGS
T ss_pred HHHHHHHh-----ccCCCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC----CCC-eEEeCcccccccC
Confidence 34566655 12278999999999999999988877 8999999999999999873 256 8999999988755
Q ss_pred CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEE
Q psy8370 146 DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 225 (256)
Q Consensus 146 ~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~ 225 (256)
.+ +||+|++..+++|++.++...++++++++|+|||.+++....................++.+++.++++++||+++
T Consensus 100 ~~--~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 177 (203)
T 3h2b_A 100 PK--RWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVT 177 (203)
T ss_dssp CC--CEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEE
T ss_pred CC--CeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEE
Confidence 55 8999999999999987678899999999999999999987655443322223334556799999999999999999
Q ss_pred EeeeecC
Q psy8370 226 KSEKVTG 232 (256)
Q Consensus 226 ~~~~~~~ 232 (256)
.......
T Consensus 178 ~~~~~~~ 184 (203)
T 3h2b_A 178 SSHWDPR 184 (203)
T ss_dssp EEEECTT
T ss_pred EEEecCC
Confidence 8876555
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.2e-23 Score=156.68 Aligned_cols=170 Identities=15% Similarity=0.232 Sum_probs=130.7
Q ss_pred HHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC
Q psy8370 68 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL 147 (256)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~ 147 (256)
.+..++ . ...++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.++++. ++ .+..+|+.+++ ..+
T Consensus 33 ~~~~~~-~--~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-----~~-~~~~~d~~~~~-~~~ 101 (211)
T 3e23_A 33 TLTKFL-G--ELPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL-----GR-PVRTMLFHQLD-AID 101 (211)
T ss_dssp HHHHHH-T--TSCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-----TS-CCEECCGGGCC-CCS
T ss_pred HHHHHH-H--hcCCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc-----CC-ceEEeeeccCC-CCC
Confidence 355554 1 235678999999999999999988876 9999999999999999886 34 77889998877 334
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcC-CcEEE
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN-LKCVK 226 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-f~~~~ 226 (256)
+||+|++..+++|++.++...++++++++|+|||.+++.......... .........++.+++.++++++| |+++.
T Consensus 102 --~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~aG~f~~~~ 178 (211)
T 3e23_A 102 --AYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGR-DKLARYYNYPSEEWLRARYAEAGTWASVA 178 (211)
T ss_dssp --CEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEE-CTTSCEECCCCHHHHHHHHHHHCCCSEEE
T ss_pred --cEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccc-cccchhccCCCHHHHHHHHHhCCCcEEEE
Confidence 899999999999998878889999999999999999998544332211 11111223469999999999999 99998
Q ss_pred eeeecC-CCCcceeeeEEEeccCCCC
Q psy8370 227 SEKVTG-MPKSLFKIYMFALKPNKDK 251 (256)
Q Consensus 227 ~~~~~~-~~~~~~~~~~~~l~~~~~~ 251 (256)
...... .+......|+..++.+.+.
T Consensus 179 ~~~~~~~~~~~~~~~wl~~~~~~~~~ 204 (211)
T 3e23_A 179 VESSEGKGFDQELAQFLHVSVRKPEL 204 (211)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECCCC
T ss_pred EEeccCCCCCCCCceEEEEEEecCcc
Confidence 765432 2445567787777766543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-23 Score=157.91 Aligned_cols=144 Identities=10% Similarity=0.012 Sum_probs=113.3
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-------------cCCCcceEEEccccccCC
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK-------------DCDKLDKCYNVGIQDFKP 144 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------~~~~i~~~~~~d~~~~~~ 144 (256)
...++.+|||+|||+|..+..++++|+ +|+|+|+|+.|++.|+++... ...++ .+.++|+.++++
T Consensus 19 ~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~d~~~l~~ 96 (203)
T 1pjz_A 19 NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI-EIWCGDFFALTA 96 (203)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS-EEEEECCSSSTH
T ss_pred ccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCcc-EEEECccccCCc
Confidence 356788999999999999999998887 899999999999999988642 12467 899999998876
Q ss_pred CC-CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCc
Q psy8370 145 ED-LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLK 223 (256)
Q Consensus 145 ~~-~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~ 223 (256)
.. + +||+|++..++++++.++...++++++++|||||.+++........ ......+..+.+++.+++.. ||+
T Consensus 97 ~~~~--~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~----~~~~~~~~~~~~el~~~~~~-gf~ 169 (203)
T 1pjz_A 97 RDIG--HCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQA----LLEGPPFSVPQTWLHRVMSG-NWE 169 (203)
T ss_dssp HHHH--SEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSS----SSSSCCCCCCHHHHHHTSCS-SEE
T ss_pred ccCC--CEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcc----ccCCCCCCCCHHHHHHHhcC-CcE
Confidence 53 4 7999999999999988888889999999999999844433222111 01112234688999999988 999
Q ss_pred EEEeeee
Q psy8370 224 CVKSEKV 230 (256)
Q Consensus 224 ~~~~~~~ 230 (256)
++.....
T Consensus 170 i~~~~~~ 176 (203)
T 1pjz_A 170 VTKVGGQ 176 (203)
T ss_dssp EEEEEES
T ss_pred EEEeccc
Confidence 8766543
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-23 Score=162.15 Aligned_cols=161 Identities=17% Similarity=0.183 Sum_probs=122.5
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeE
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHF---DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
.+++.+|||||||+|..+..+++... .+|+|+|+|+.|++.|++++...+ .++ .++++|+.+++. . .||+
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v-~~~~~D~~~~~~--~--~~d~ 142 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPV-DVIEGDIRDIAI--E--NASM 142 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCE-EEEESCTTTCCC--C--SEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceE-EEeecccccccc--c--cccc
Confidence 36789999999999999999987632 289999999999999999988654 467 899999988764 2 5999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc----------------ccCCC----------Ccee
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE----------------YDDED----------SSVV 207 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~----------------~~~~~----------~~~~ 207 (256)
|++..+++++++++...++++++++|||||.|++.+......... +.... ....
T Consensus 143 v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~ 222 (261)
T 4gek_A 143 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLT 222 (261)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCC
T ss_pred ceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccC
Confidence 999999999998888899999999999999999987654432210 00000 0112
Q ss_pred eCHHHHHHHHHhcCCcEEEeeeecCCCCcceeeeEEEeccCC
Q psy8370 208 RSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALKPNK 249 (256)
Q Consensus 208 ~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~ 249 (256)
.+.+++.++|+++||+.++...+.. .|..+ .+.|+..
T Consensus 223 ~s~~~~~~~L~~AGF~~ve~~fq~~----nF~~~-iA~K~~~ 259 (261)
T 4gek_A 223 DSVETHKARLHKAGFEHSELWFQCF----NFGSL-VALKAED 259 (261)
T ss_dssp BCHHHHHHHHHHHTCSEEEEEEEET----TEEEE-EEECCTT
T ss_pred CCHHHHHHHHHHcCCCeEEEEEEec----cEEEE-EEEEcCC
Confidence 4788999999999999887654332 23333 4556553
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.8e-23 Score=157.47 Aligned_cols=149 Identities=18% Similarity=0.267 Sum_probs=117.4
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~ 146 (256)
.++..+. ..++.+|||+|||+|.++..++..+. +++|+|+|+.+++.++++.. .++ .+..+|+.+++..
T Consensus 36 ~~l~~~~-----~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~---~~~-~~~~~d~~~~~~~- 104 (220)
T 3hnr_A 36 DILEDVV-----NKSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP---KEF-SITEGDFLSFEVP- 104 (220)
T ss_dssp HHHHHHH-----HTCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC---TTC-CEESCCSSSCCCC-
T ss_pred HHHHHhh-----ccCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC---Cce-EEEeCChhhcCCC-
Confidence 4455544 34778999999999999999988876 99999999999999998865 356 8999999988765
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc------c---------cCCCCceeeCHH
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE------Y---------DDEDSSVVRSLP 211 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~------~---------~~~~~~~~~~~~ 211 (256)
+ +||+|++..+++++++.....++++++++|||||.+++.+......... . ......+..+.+
T Consensus 105 ~--~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (220)
T 3hnr_A 105 T--SIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIP 182 (220)
T ss_dssp S--CCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHH
T ss_pred C--CeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHH
Confidence 5 8999999999999987766679999999999999999987544332110 0 000011234889
Q ss_pred HHHHHHHhcCCcEEEee
Q psy8370 212 QFCLLFSKANLKCVKSE 228 (256)
Q Consensus 212 ~~~~~l~~~gf~~~~~~ 228 (256)
++.++++++||+++...
T Consensus 183 ~~~~~l~~aGf~v~~~~ 199 (220)
T 3hnr_A 183 VMQTIFENNGFHVTFTR 199 (220)
T ss_dssp HHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHCCCEEEEee
Confidence 99999999999988765
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-22 Score=155.88 Aligned_cols=147 Identities=24% Similarity=0.315 Sum_probs=118.4
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..++.+|||+|||+|.++..++... ..+++|+|+|+.+++.++++....+ ++ .+..+|+.+.+.. . +||+|++.
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~-~~~~~d~~~~~~~-~--~fD~v~~~ 116 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-KV-KYIEADYSKYDFE-E--KYDMVVSA 116 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT-TE-EEEESCTTTCCCC-S--CEEEEEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC-CE-EEEeCchhccCCC-C--CceEEEEe
Confidence 5677999999999999999998874 2399999999999999999876554 67 8999999988765 4 79999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-------------------------cccCCCCceeeCHHH
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------------------------EYDDEDSSVVRSLPQ 212 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~ 212 (256)
.++++++++....++++++++|+|||.+++.+........ ..........++.++
T Consensus 117 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (234)
T 3dtn_A 117 LSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQ 196 (234)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHH
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHH
Confidence 9999998877778999999999999999998754433210 011112334468899
Q ss_pred HHHHHHhcCCcEEEeeee
Q psy8370 213 FCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 213 ~~~~l~~~gf~~~~~~~~ 230 (256)
+.++++++||+.++....
T Consensus 197 ~~~ll~~aGF~~v~~~~~ 214 (234)
T 3dtn_A 197 QLNWLKEAGFRDVSCIYK 214 (234)
T ss_dssp HHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHcCCCceeeeee
Confidence 999999999999987643
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-22 Score=157.94 Aligned_cols=196 Identities=17% Similarity=0.213 Sum_probs=129.1
Q ss_pred cCCccchhhhhhhhccCCCCcccccccCCCCccc--cchhhhH-HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHh
Q psy8370 26 KDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISD--LDIQTSN-QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK 102 (256)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~ 102 (256)
.+....+|+...++|+...... +.-+|+.... ....... +.+..++ +.....++.+|||||||+|.++..++..
T Consensus 6 ~~~~~~~Yd~~~~~y~~~~~~~--~~~~y~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~vLDiGcG~G~~~~~l~~~ 82 (273)
T 3bus_A 6 PEEVRQMYDDFTDPFARIWGEN--LHFGYWEDAGADVSVDDATDRLTDEMI-ALLDVRSGDRVLDVGCGIGKPAVRLATA 82 (273)
T ss_dssp -----------------CCGGG--CCCCCCCCSSCCCCHHHHHHHHHHHHH-HHSCCCTTCEEEEESCTTSHHHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHcCCC--ceEEecCCCccccCHHHHHHHHHHHHH-HhcCCCCCCEEEEeCCCCCHHHHHHHHh
Confidence 4456678887777777644331 2222222111 2233333 3444444 5556778899999999999999999876
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcC
Q psy8370 103 HFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILN 180 (256)
Q Consensus 103 ~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lk 180 (256)
...+|+|+|+|+.+++.++++....+ .++ .+..+|+.+++...+ +||+|++..+++|+++ ...++++++++|+
T Consensus 83 ~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~~--~fD~v~~~~~l~~~~~--~~~~l~~~~~~L~ 157 (273)
T 3bus_A 83 RDVRVTGISISRPQVNQANARATAAGLANRV-TFSYADAMDLPFEDA--SFDAVWALESLHHMPD--RGRALREMARVLR 157 (273)
T ss_dssp SCCEEEEEESCHHHHHHHHHHHHHTTCTTTE-EEEECCTTSCCSCTT--CEEEEEEESCTTTSSC--HHHHHHHHHTTEE
T ss_pred cCCEEEEEeCCHHHHHHHHHHHHhcCCCcce-EEEECccccCCCCCC--CccEEEEechhhhCCC--HHHHHHHHHHHcC
Confidence 44599999999999999999987654 357 899999988776555 8999999999999954 4689999999999
Q ss_pred CCcEEEEEecccCCCCccc---------cCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 181 KNGIIIIKDNVASGVKNEY---------DDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 181 pgG~l~i~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
|||.+++.+.......... .........+.+++.++++++||+++....
T Consensus 158 pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 215 (273)
T 3bus_A 158 PGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVD 215 (273)
T ss_dssp EEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred CCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEEE
Confidence 9999999876543321100 001123446889999999999999987664
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-22 Score=154.90 Aligned_cols=143 Identities=20% Similarity=0.180 Sum_probs=114.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.++.+|||||||+|.++..++..+. +|+|+|+|+.+++.++++.. ..++ .++.+|+.+++.... +||+|++..+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~--~~~~-~~~~~d~~~~~~~~~--~fD~v~~~~~ 125 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGE--GPDL-SFIKGDLSSLPFENE--QFEAIMAINS 125 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTC--BTTE-EEEECBTTBCSSCTT--CEEEEEEESC
T ss_pred CCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcc--cCCc-eEEEcchhcCCCCCC--CccEEEEcCh
Confidence 4778999999999999999988876 89999999999999988742 2466 899999998876555 8999999999
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc------cccCCCCceeeCHHHHHHHHHhcCCcEEEeeee
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------EYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
++|++ +...++++++++|+|||.+++.......... ..........++..++.++++++||++++....
T Consensus 126 l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 200 (242)
T 3l8d_A 126 LEWTE--EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGV 200 (242)
T ss_dssp TTSSS--CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred Hhhcc--CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEeecc
Confidence 99994 4468999999999999999998643332211 111222233468899999999999999987643
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=156.02 Aligned_cols=194 Identities=14% Similarity=0.142 Sum_probs=136.3
Q ss_pred ccchhhhhhhhccCCCCcccccccCCCCccccchhhhH-HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeE
Q psy8370 29 NRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSN-QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKI 107 (256)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v 107 (256)
...+|+...++|+........+..+|..........+. +.+..++ ......++.+|||||||+|.++..++.....+|
T Consensus 12 i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~-~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v 90 (287)
T 1kpg_A 12 VQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLAL-GKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNV 90 (287)
T ss_dssp HHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHH-TTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEE
T ss_pred HHHhcCCCHHHHHHhcCCCCCcceEEecCCCCCHHHHHHHHHHHHH-HHcCCCCcCEEEEECCcccHHHHHHHHHcCCEE
Confidence 34567766666655333221122222221223333343 3455555 556677889999999999999999985433399
Q ss_pred EEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEE
Q psy8370 108 DLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGII 185 (256)
Q Consensus 108 ~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 185 (256)
+|+|+|+.+++.++++....+ .++ .+..+|+.+++ + +||+|++..+++|+++++...++++++++|||||.+
T Consensus 91 ~gvd~s~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~---~--~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 164 (287)
T 1kpg_A 91 VGLTLSKNQANHVQQLVANSENLRSK-RVLLAGWEQFD---E--PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVM 164 (287)
T ss_dssp EEEESCHHHHHHHHHHHHTCCCCSCE-EEEESCGGGCC---C--CCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEE
T ss_pred EEEECCHHHHHHHHHHHHhcCCCCCe-EEEECChhhCC---C--CeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEE
Confidence 999999999999999987654 356 88999997764 4 799999999999997666789999999999999999
Q ss_pred EEEecccCCCCcc-------------------ccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 186 IIKDNVASGVKNE-------------------YDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 186 ~i~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
++.+......... ..........+.+++.++++++||+++....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~ 227 (287)
T 1kpg_A 165 LLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQS 227 (287)
T ss_dssp EEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEE
T ss_pred EEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHhCCcEEEEEEe
Confidence 9987554321110 0001112235899999999999999988763
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-22 Score=157.72 Aligned_cols=144 Identities=17% Similarity=0.123 Sum_probs=113.1
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh------------------cCCCcceEEEcccc
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK------------------DCDKLDKCYNVGIQ 140 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~------------------~~~~i~~~~~~d~~ 140 (256)
..++.+|||+|||+|..+..|++.|+ +|+|+|+|+.|++.|+++... ...++ .+.++|+.
T Consensus 66 ~~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~D~~ 143 (252)
T 2gb4_A 66 GQSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSI-SLYCCSIF 143 (252)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSE-EEEESCTT
T ss_pred CCCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCce-EEEECccc
Confidence 35678999999999999999999988 899999999999999876531 12467 89999999
Q ss_pred ccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhc
Q psy8370 141 DFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA 220 (256)
Q Consensus 141 ~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (256)
++++... ++||+|++..+++++++++...+++++.++|||||.+++......... . ....+..+.+++.+++..
T Consensus 144 ~l~~~~~-~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~--~--~g~~~~~~~~el~~~l~~- 217 (252)
T 2gb4_A 144 DLPRANI-GKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK--H--AGPPFYVPSAELKRLFGT- 217 (252)
T ss_dssp TGGGGCC-CCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS--C--CCSSCCCCHHHHHHHHTT-
T ss_pred cCCcccC-CCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc--C--CCCCCCCCHHHHHHHhhC-
Confidence 9876531 389999999999999887788899999999999999975432222111 1 122334689999999987
Q ss_pred CCcEEEeeee
Q psy8370 221 NLKCVKSEKV 230 (256)
Q Consensus 221 gf~~~~~~~~ 230 (256)
+|+++.....
T Consensus 218 ~f~v~~~~~~ 227 (252)
T 2gb4_A 218 KCSMQCLEEV 227 (252)
T ss_dssp TEEEEEEEEE
T ss_pred CeEEEEEecc
Confidence 5998876643
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-21 Score=157.97 Aligned_cols=196 Identities=13% Similarity=0.124 Sum_probs=139.3
Q ss_pred cCCccchhhhhhhhccCCCCcccccccCCCCccccchhhhH-HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHh-c
Q psy8370 26 KDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSN-QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-H 103 (256)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~ 103 (256)
.+....+|+...++|+........+..++............ +.+..++ ......++.+|||||||+|.++..++.. +
T Consensus 35 ~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~vLDiGcG~G~~~~~la~~~~ 113 (318)
T 2fk8_A 35 FEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNL-DKLDLKPGMTLLDIGCGWGTTMRRAVERFD 113 (318)
T ss_dssp ---CGGGGCCCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHH-TTSCCCTTCEEEEESCTTSHHHHHHHHHHC
T ss_pred HHHHHHhcCCCHHHHHHHcCCCCCcceeeeCCCCCCHHHHHHHHHHHHH-HhcCCCCcCEEEEEcccchHHHHHHHHHCC
Confidence 44566788866677765433222222222222223333333 4455555 5556778899999999999999999877 5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCC
Q psy8370 104 FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNK 181 (256)
Q Consensus 104 ~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkp 181 (256)
. +|+|+|+|+.+++.++++....+ .++ .+..+|+.+++ + +||+|++..+++|++.++...+++++.++|+|
T Consensus 114 ~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~---~--~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp 186 (318)
T 2fk8_A 114 V-NVIGLTLSKNQHARCEQVLASIDTNRSR-QVLLQGWEDFA---E--PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPA 186 (318)
T ss_dssp C-EEEEEESCHHHHHHHHHHHHTSCCSSCE-EEEESCGGGCC---C--CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCT
T ss_pred C-EEEEEECCHHHHHHHHHHHHhcCCCCce-EEEECChHHCC---C--CcCEEEEeChHHhcCHHHHHHHHHHHHHhcCC
Confidence 5 99999999999999999987654 346 88999988763 4 79999999999999877778999999999999
Q ss_pred CcEEEEEecccCCCCccc-------------------cCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 182 NGIIIIKDNVASGVKNEY-------------------DDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 182 gG~l~i~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
||.+++.+.......... .........+.+++.++++++||+++....
T Consensus 187 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~ 253 (318)
T 2fk8_A 187 DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLS 253 (318)
T ss_dssp TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCCCEE
T ss_pred CcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHHHhCCCEEEEEEe
Confidence 999999876544321100 001112335899999999999999887553
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-21 Score=148.12 Aligned_cols=163 Identities=17% Similarity=0.160 Sum_probs=122.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC------CCcceEEEccccccCCCCCCCce
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC------DKLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~------~~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
..++.+|||||||+|.++..++..+. .+++|+|+|+.+++.+++++...+ .++ .+..+|+...+.... +|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~--~f 103 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERL-QLIQGALTYQDKRFH--GY 103 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTE-EEEECCTTSCCGGGC--SC
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcce-EEEeCCcccccccCC--Cc
Confidence 45678999999999999999988764 499999999999999999976443 156 899999876655444 89
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCC------CCccccCCCCceeeCHHHHH----HHHHhcC
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG------VKNEYDDEDSSVVRSLPQFC----LLFSKAN 221 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~----~~l~~~g 221 (256)
|+|++..+++|+++++...+++++.++|||||.++++.+.... .........+.+.++.+++. ++++++|
T Consensus 104 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~G 183 (217)
T 3jwh_A 104 DAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFA 183 (217)
T ss_dssp SEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSS
T ss_pred CEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcC
Confidence 9999999999998888889999999999999988877543210 00011122334456889988 8999999
Q ss_pred CcEEEeeeecCCCCcceeeeEEE
Q psy8370 222 LKCVKSEKVTGMPKSLFKIYMFA 244 (256)
Q Consensus 222 f~~~~~~~~~~~~~~~~~~~~~~ 244 (256)
|++.........|...++..+..
T Consensus 184 f~v~~~~~g~~~~~~g~~~q~~~ 206 (217)
T 3jwh_A 184 YNVQFQPIGEADPEVGSPTQMAV 206 (217)
T ss_dssp EEEEECCCSCCCSSSCCSEEEEE
T ss_pred ceEEEEecCCccCCCCchheeEe
Confidence 99877654444455555555544
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.88 E-value=9.3e-22 Score=158.58 Aligned_cols=193 Identities=21% Similarity=0.254 Sum_probs=135.8
Q ss_pred ccchhhhh--hhhccCCCCcccccccCCCCcc--ccchhh-hHHHHHHHHhccC----CCCCCCeEEEEcCCCCHhHHHH
Q psy8370 29 NRSHYSEV--TEYYSNVPPTIDGMLNGYSSIS--DLDIQT-SNQFLSSLYCQKK----SDPGKTRVLDVGAGIGRISKYL 99 (256)
Q Consensus 29 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~l~~~~~~~~----~~~~~~~vLDiG~G~G~~~~~l 99 (256)
...||+.. .++|+..+.... +.-+|.... ...... ..+.+..++ ... ...++.+|||||||+|.++..+
T Consensus 23 ~~~~Yd~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~vLDiGcG~G~~~~~l 100 (297)
T 2o57_A 23 AEIYYDDDDSDRFYFHVWGGED-IHVGLYKEPVDQDEIREASLRTDEWLA-SELAMTGVLQRQAKGLDLGAGYGGAARFL 100 (297)
T ss_dssp HHHTHHHHHHHHHHHHHHTTSC-CCSCCCCSSGGGSCHHHHHHHHHHHHH-HHHHHTTCCCTTCEEEEETCTTSHHHHHH
T ss_pred HHHHcCCccchhHHHHHhCCCc-eEEEecCCCCCCcchHHHHHHHHHHHH-HHhhhccCCCCCCEEEEeCCCCCHHHHHH
Confidence 45678865 477765443221 122221111 122222 223444444 333 5678899999999999999999
Q ss_pred HHh-cCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHh
Q psy8370 100 LAK-HFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCK 176 (256)
Q Consensus 100 ~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~ 176 (256)
+.. +. +|+|+|+|+.+++.++++....+ .++ .+..+|+.+++...+ +||+|++..+++|+++ ...++++++
T Consensus 101 ~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~~--~fD~v~~~~~l~~~~~--~~~~l~~~~ 174 (297)
T 2o57_A 101 VRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNI-TVKYGSFLEIPCEDN--SYDFIWSQDAFLHSPD--KLKVFQECA 174 (297)
T ss_dssp HHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTE-EEEECCTTSCSSCTT--CEEEEEEESCGGGCSC--HHHHHHHHH
T ss_pred HHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcce-EEEEcCcccCCCCCC--CEeEEEecchhhhcCC--HHHHHHHHH
Confidence 887 54 99999999999999999887654 357 899999998876555 8999999999999964 578999999
Q ss_pred hhcCCCcEEEEEecccCCCCcc--c----cCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 177 QILNKNGIIIIKDNVASGVKNE--Y----DDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 177 ~~LkpgG~l~i~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
++|||||.+++.+......... . .........+..++.++++++||+++....
T Consensus 175 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 233 (297)
T 2o57_A 175 RVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFS 233 (297)
T ss_dssp HHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred HHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 9999999999987654432210 0 000111234889999999999999987654
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.9e-21 Score=146.43 Aligned_cols=163 Identities=14% Similarity=0.121 Sum_probs=122.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC------CCcceEEEccccccCCCCCCCce
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC------DKLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~------~~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
..++.+|||||||+|.++..++..+. .+++|+|+|+.+++.+++++...+ .++ .+..+|+...+.... +|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~--~f 103 (219)
T 3jwg_A 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRI-SLFQSSLVYRDKRFS--GY 103 (219)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTE-EEEECCSSSCCGGGT--TC
T ss_pred hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcce-EEEeCcccccccccC--CC
Confidence 35678999999999999999987764 499999999999999999986543 156 899999976655445 89
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc------cccCCCCceeeCHHHHH----HHHHhcC
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------EYDDEDSSVVRSLPQFC----LLFSKAN 221 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~----~~l~~~g 221 (256)
|+|++..+++|+++++...+++++.++|+|||.++.+.+....... ......+.+.++.+++. ++++++|
T Consensus 104 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~G 183 (219)
T 3jwg_A 104 DAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYG 183 (219)
T ss_dssp SEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHT
T ss_pred CEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCC
Confidence 9999999999998888889999999999999977776543221110 11112333446888888 8899999
Q ss_pred CcEEEeeeecCCCCcceeeeEEE
Q psy8370 222 LKCVKSEKVTGMPKSLFKIYMFA 244 (256)
Q Consensus 222 f~~~~~~~~~~~~~~~~~~~~~~ 244 (256)
|++.........+.-..+..+..
T Consensus 184 f~v~~~~~g~~~~~~g~~~qi~~ 206 (219)
T 3jwg_A 184 YSVRFLQIGEIDDEFGSPTQMGV 206 (219)
T ss_dssp EEEEEEEESCCCTTSCCSEEEEE
T ss_pred cEEEEEecCCccccCCCCeEEEE
Confidence 98877654444454444444443
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.8e-21 Score=153.90 Aligned_cols=156 Identities=14% Similarity=0.054 Sum_probs=122.6
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKP 144 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~ 144 (256)
+.+..++ ......++.+|||||||+|.++..++.....+|+|+|+|+.+++.++++....+ .++ .+..+|+.++
T Consensus 59 ~~~~~~~-~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~-- 134 (302)
T 3hem_A 59 AKRKLAL-DKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRK-EVRIQGWEEF-- 134 (302)
T ss_dssp HHHHHHH-HTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCE-EEEECCGGGC--
T ss_pred HHHHHHH-HHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCce-EEEECCHHHc--
Confidence 4555555 555677889999999999999999988733599999999999999999988765 256 8999999876
Q ss_pred CCCCCceeEEEechhhhcc-------CHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccc------------------
Q psy8370 145 EDLNIKYDVIWIQWVLMFI-------LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY------------------ 199 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~-------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------------------ 199 (256)
.+ +||+|++..+++|+ +.+....+++++.++|||||.+++.+..........
T Consensus 135 -~~--~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (302)
T 3hem_A 135 -DE--PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFIL 211 (302)
T ss_dssp -CC--CCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred -CC--CccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHH
Confidence 33 89999999999999 335678999999999999999999876544321100
Q ss_pred -cCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 200 -DDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 200 -~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
.........+.+++.++++++||+++....
T Consensus 212 ~~~~p~~~~~s~~~~~~~l~~aGf~~~~~~~ 242 (302)
T 3hem_A 212 TEIFPGGRLPRISQVDYYSSNAGWKVERYHR 242 (302)
T ss_dssp HHTCTTCCCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred HhcCCCCCCCCHHHHHHHHHhCCcEEEEEEe
Confidence 011122346789999999999999988764
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=154.95 Aligned_cols=153 Identities=11% Similarity=0.036 Sum_probs=111.0
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC----------------------------
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD---------------------------- 129 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---------------------------- 129 (256)
...++.+|||||||+|.++..++..++.+|+|+|+|+.|++.++++......
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 3456789999999999988877777776899999999999999987643210
Q ss_pred --CcceEEEccccccCCCC--CCCceeEEEechhhhccC--HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCC
Q psy8370 130 --KLDKCYNVGIQDFKPED--LNIKYDVIWIQWVLMFIL--DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDED 203 (256)
Q Consensus 130 --~i~~~~~~d~~~~~~~~--~~~~~D~V~~~~~l~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 203 (256)
++..+..+|+.+..+.. ..++||+|+++.++|++. .++...++++++++|||||.|+++..........-....
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~ 211 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREF 211 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEe
Confidence 12127888988743311 124899999999999863 367788999999999999999998643322110000000
Q ss_pred CceeeCHHHHHHHHHhcCCcEEEeeee
Q psy8370 204 SSVVRSLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 204 ~~~~~~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
....++.+++.++++++||++++....
T Consensus 212 ~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 212 SCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred eccccCHHHHHHHHHHCCCEEEEEeec
Confidence 112358999999999999999887653
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.1e-21 Score=152.92 Aligned_cols=146 Identities=13% Similarity=0.206 Sum_probs=115.1
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC----CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC----DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
++.+|||||||+|.++..++..+. +|+|+|+|+.+++.++++....+ .++ .++++|+.+++. .. +||+|++
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v-~~~~~d~~~~~~-~~--~fD~v~~ 156 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRC-TLVQGDMSAFAL-DK--RFGTVVI 156 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTE-EEEECBTTBCCC-SC--CEEEEEE
T ss_pred CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccce-EEEeCchhcCCc-CC--CcCEEEE
Confidence 445999999999999999988876 89999999999999999988654 467 899999998766 34 7998886
Q ss_pred c-hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc-----------------cc------------------
Q psy8370 157 Q-WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-----------------YD------------------ 200 (256)
Q Consensus 157 ~-~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----------------~~------------------ 200 (256)
. .+++++++++...++++++++|+|||.+++........... ..
T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 236 (299)
T 3g2m_A 157 SSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPAD 236 (299)
T ss_dssp CHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEEEEEEEESC
T ss_pred CCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEEEEEEEecc
Confidence 5 67888887788899999999999999999975433211000 00
Q ss_pred --------CCCCceeeCHHHHHHHHHhcCCcEEEeeeec
Q psy8370 201 --------DEDSSVVRSLPQFCLLFSKANLKCVKSEKVT 231 (256)
Q Consensus 201 --------~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~ 231 (256)
.......++.+++.++++++||+++......
T Consensus 237 ~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~ 275 (299)
T 3g2m_A 237 ETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA 275 (299)
T ss_dssp C--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred CCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence 0011124699999999999999999877543
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-21 Score=150.20 Aligned_cols=145 Identities=16% Similarity=0.208 Sum_probs=115.6
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc--CCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF--KPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~--~~~~~~~~~D~V~~ 156 (256)
..++.+|||||||+|.++..++..+. +|+|+|+|+.+++.++++ + .+...|+.+. +...+ +||+|++
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~-------~-~~~~~d~~~~~~~~~~~--~fD~i~~ 107 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK-------F-NVVKSDAIEYLKSLPDK--YLDGVMI 107 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT-------S-EEECSCHHHHHHTSCTT--CBSEEEE
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh-------c-ceeeccHHHHhhhcCCC--CeeEEEE
Confidence 45678999999999999999988877 899999999999998865 4 7888898775 33334 8999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc---cccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCC
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---EYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGM 233 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~ 233 (256)
..+++|+++++...++++++++|||||.+++.......... ......+...++.+++.++++++||+++.......+
T Consensus 108 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~ 187 (240)
T 3dli_A 108 SHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEFFEEC 187 (240)
T ss_dssp ESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEEECCC
T ss_pred CCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEEeccC
Confidence 99999998777889999999999999999998654332111 011223345578899999999999999887765544
Q ss_pred C
Q psy8370 234 P 234 (256)
Q Consensus 234 ~ 234 (256)
+
T Consensus 188 ~ 188 (240)
T 3dli_A 188 E 188 (240)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=150.13 Aligned_cols=143 Identities=17% Similarity=0.266 Sum_probs=111.9
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
...++.+|||||||+|.++..++..+. +++|+|+|+.+++.+++ . ...++ .+..+|+.++ ...+ +||+|++.
T Consensus 43 ~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~--~-~~~~~-~~~~~d~~~~-~~~~--~~D~v~~~ 114 (218)
T 3ou2_A 43 AGNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR--H-GLDNV-EFRQQDLFDW-TPDR--QWDAVFFA 114 (218)
T ss_dssp TTTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG--G-CCTTE-EEEECCTTSC-CCSS--CEEEEEEE
T ss_pred cCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh--c-CCCCe-EEEecccccC-CCCC--ceeEEEEe
Confidence 356678999999999999999988876 99999999999999988 1 11466 8999999887 4344 89999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc--c-----------cCCCCce-----eeCHHHHHHHHHh
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE--Y-----------DDEDSSV-----VRSLPQFCLLFSK 219 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--~-----------~~~~~~~-----~~~~~~~~~~l~~ 219 (256)
.+++|++++....++++++++|+|||.+++.+......... . ......+ ..+.+++.+++++
T Consensus 115 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 194 (218)
T 3ou2_A 115 HWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTA 194 (218)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHH
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHH
Confidence 99999988777899999999999999999987654321110 0 0011111 2489999999999
Q ss_pred cCCcEEEee
Q psy8370 220 ANLKCVKSE 228 (256)
Q Consensus 220 ~gf~~~~~~ 228 (256)
+||++....
T Consensus 195 aGf~v~~~~ 203 (218)
T 3ou2_A 195 LGWSCSVDE 203 (218)
T ss_dssp TTEEEEEEE
T ss_pred CCCEEEeee
Confidence 999966554
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-21 Score=152.26 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=116.1
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEE
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
......++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.++++.. ..++ .+..+|+.+++.... +||+|
T Consensus 38 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~-~~~~~d~~~~~~~~~--~fD~v 112 (253)
T 3g5l_A 38 KMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT--SPVV-CYEQKAIEDIAIEPD--AYNVV 112 (253)
T ss_dssp TTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC--CTTE-EEEECCGGGCCCCTT--CEEEE
T ss_pred HhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc--cCCe-EEEEcchhhCCCCCC--CeEEE
Confidence 444556789999999999999999988887699999999999999998865 2456 899999988876555 89999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-----cccC-------------------------CCC
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-----EYDD-------------------------EDS 204 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----~~~~-------------------------~~~ 204 (256)
++..+++++ ++...++++++++|+|||.+++.......... .... ...
T Consensus 113 ~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (253)
T 3g5l_A 113 LSSLALHYI--ASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQ 190 (253)
T ss_dssp EEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEE
T ss_pred EEchhhhhh--hhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCc
Confidence 999999999 45678999999999999999997432110000 0000 001
Q ss_pred ceeeCHHHHHHHHHhcCCcEEEeeee
Q psy8370 205 SVVRSLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 205 ~~~~~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
.+.++.+++.++++++||+++.....
T Consensus 191 ~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 191 KYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred cEecCHHHHHHHHHHcCCeeeeeecC
Confidence 12249999999999999999987754
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-21 Score=152.96 Aligned_cols=158 Identities=18% Similarity=0.259 Sum_probs=124.5
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~ 146 (256)
+.+..++ ......++.+|||||||+|.++..++.....+|+|+|+|+.+++.++++.... .++ .+..+|+.+.+...
T Consensus 42 ~~~~~~~-~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~-~~~~~d~~~~~~~~ 118 (266)
T 3ujc_A 42 EATKKIL-SDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN-NKI-IFEANDILTKEFPE 118 (266)
T ss_dssp HHHHHHT-TTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC-TTE-EEEECCTTTCCCCT
T ss_pred HHHHHHH-HhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC-CCe-EEEECccccCCCCC
Confidence 3455555 55567788999999999999999998874349999999999999999886544 466 89999999886655
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccc------cCCCCceeeCHHHHHHHHHhc
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY------DDEDSSVVRSLPQFCLLFSKA 220 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~ 220 (256)
+ +||+|++..+++|++.++...++++++++|+|||.+++.+.......... ....+....+.+++.++++++
T Consensus 119 ~--~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 196 (266)
T 3ujc_A 119 N--NFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTAC 196 (266)
T ss_dssp T--CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHT
T ss_pred C--cEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHc
Confidence 5 89999999999999888889999999999999999999876444311100 000112245889999999999
Q ss_pred CCcEEEeee
Q psy8370 221 NLKCVKSEK 229 (256)
Q Consensus 221 gf~~~~~~~ 229 (256)
||+++....
T Consensus 197 Gf~~~~~~~ 205 (266)
T 3ujc_A 197 NFKNVVSKD 205 (266)
T ss_dssp TCEEEEEEE
T ss_pred CCeEEEEEe
Confidence 999987653
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=151.33 Aligned_cols=161 Identities=14% Similarity=0.138 Sum_probs=122.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC------CcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD------KLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
.++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++....+. ++ .+...|+.+.+.... +||+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~--~~D~ 104 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKA-EFKVENASSLSFHDS--SFDF 104 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEE-EEEECCTTSCCSCTT--CEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcce-EEEEecccccCCCCC--ceeE
Confidence 5788999999999999999988876 999999999999999998775442 45 888999988776555 8999
Q ss_pred EEechhhhccCH-HHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc--------------------ccC-----CCCcee
Q psy8370 154 IWIQWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE--------------------YDD-----EDSSVV 207 (256)
Q Consensus 154 V~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--------------------~~~-----~~~~~~ 207 (256)
|++..+++++++ .....++++++++|+|||.+++.+......... ... ......
T Consensus 105 v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (235)
T 3sm3_A 105 AVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHH 184 (235)
T ss_dssp EEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEEC
T ss_pred EEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEe
Confidence 999999999964 556689999999999999999986543221110 000 011234
Q ss_pred eCHHHHHHHHHhcCCcEEEeeeec---CCCCcceeeeEEE
Q psy8370 208 RSLPQFCLLFSKANLKCVKSEKVT---GMPKSLFKIYMFA 244 (256)
Q Consensus 208 ~~~~~~~~~l~~~gf~~~~~~~~~---~~~~~~~~~~~~~ 244 (256)
++.+++.++++++||+++...... ........+++..
T Consensus 185 ~~~~~l~~ll~~aGf~~~~~~~~~~~~~~g~~~~~~~i~~ 224 (235)
T 3sm3_A 185 FTEKELVFLLTDCRFEIDYFRVKELETRTGNKILGFVIIA 224 (235)
T ss_dssp BCHHHHHHHHHTTTEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCEEEEEEecceeeccCCccceEEEee
Confidence 699999999999999999876532 2233444444444
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=144.74 Aligned_cols=145 Identities=19% Similarity=0.194 Sum_probs=118.5
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKH-F-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
...++.+|||+|||+|.++..++..+ . .+|+|+|+|+.+++.++++....+ .++ .+..+|+.+++.... +||+|
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~d~~~~~~~~~--~fD~v 110 (219)
T 3dh0_A 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNV-EVLKSEENKIPLPDN--TVDFI 110 (219)
T ss_dssp TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTE-EEEECBTTBCSSCSS--CEEEE
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcE-EEEecccccCCCCCC--CeeEE
Confidence 35678899999999999999998886 2 399999999999999999987665 356 899999988776555 89999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeee
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
++..++++++ +...+++++.++|+|||.+++.+........ .......++.+++.++++++||+++.....
T Consensus 111 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 181 (219)
T 3dh0_A 111 FMAFTFHELS--EPLKFLEELKRVAKPFAYLAIIDWKKEERDK---GPPPEEVYSEWEVGLILEDAGIRVGRVVEV 181 (219)
T ss_dssp EEESCGGGCS--SHHHHHHHHHHHEEEEEEEEEEEECSSCCSS---SCCGGGSCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred EeehhhhhcC--CHHHHHHHHHHHhCCCeEEEEEEeccccccc---CCchhcccCHHHHHHHHHHCCCEEEEEEee
Confidence 9999999995 4568999999999999999998755444311 112233468999999999999999887543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-21 Score=151.29 Aligned_cols=146 Identities=14% Similarity=0.192 Sum_probs=116.3
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
...++.+|||||||+|.++..++..+. +|+|+|+|+.+++.++++....+ .++ .+..+|+.+++..++ +||+|++
T Consensus 34 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~l~~~~~--~fD~V~~ 109 (260)
T 1vl5_A 34 ALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQV-EYVQGDAEQMPFTDE--RFHIVTC 109 (260)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSE-EEEECCC-CCCSCTT--CEEEEEE
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCce-EEEEecHHhCCCCCC--CEEEEEE
Confidence 356789999999999999999987776 99999999999999999987655 356 899999998876555 8999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc---------cccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---------EYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
..+++|++ +...++++++++|+|||.+++.+........ ..........++.+++.++++++||+++..
T Consensus 110 ~~~l~~~~--d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 187 (260)
T 1vl5_A 110 RIAAHHFP--NPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEEL 187 (260)
T ss_dssp ESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEE
T ss_pred hhhhHhcC--CHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEE
Confidence 99999995 4468999999999999999998654433210 001112234468899999999999998876
Q ss_pred ee
Q psy8370 228 EK 229 (256)
Q Consensus 228 ~~ 229 (256)
..
T Consensus 188 ~~ 189 (260)
T 1vl5_A 188 HC 189 (260)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-21 Score=150.45 Aligned_cols=145 Identities=18% Similarity=0.167 Sum_probs=113.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.++.+|||||||+|.++..++..+. +|+|+|+|+.+++.++++... ++ .+..+|+.+.. .++ +||+|++..+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~---~v-~~~~~d~~~~~-~~~--~fD~v~~~~~ 112 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD---GI-TYIHSRFEDAQ-LPR--RYDNIVLTHV 112 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS---CE-EEEESCGGGCC-CSS--CEEEEEEESC
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC---Ce-EEEEccHHHcC-cCC--cccEEEEhhH
Confidence 4667999999999999999987776 899999999999999988643 56 88999998873 334 7999999999
Q ss_pred hhccCHHHHHHHHHHHh-hhcCCCcEEEEEecccCCCCc-------ccc----------CCCCceeeCHHHHHHHHHhcC
Q psy8370 160 LMFILDEDIIKFLNLCK-QILNKNGIIIIKDNVASGVKN-------EYD----------DEDSSVVRSLPQFCLLFSKAN 221 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~-~~LkpgG~l~i~~~~~~~~~~-------~~~----------~~~~~~~~~~~~~~~~l~~~g 221 (256)
++|+++ ...++++++ ++|||||.+++.......... ... ...+...++.+++.++++++|
T Consensus 113 l~~~~~--~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 190 (250)
T 2p7i_A 113 LEHIDD--PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAG 190 (250)
T ss_dssp GGGCSS--HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTT
T ss_pred HHhhcC--HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCC
Confidence 999954 468999999 999999999998754432100 000 112234579999999999999
Q ss_pred CcEEEeeeecCCC
Q psy8370 222 LKCVKSEKVTGMP 234 (256)
Q Consensus 222 f~~~~~~~~~~~~ 234 (256)
|+++........|
T Consensus 191 f~~~~~~~~~~~p 203 (250)
T 2p7i_A 191 LQVTYRSGIFFKA 203 (250)
T ss_dssp CEEEEEEEEEECC
T ss_pred CeEEEEeeeEecC
Confidence 9999876544333
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-20 Score=146.34 Aligned_cols=159 Identities=15% Similarity=0.224 Sum_probs=119.5
Q ss_pred hHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC
Q psy8370 65 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 144 (256)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~ 144 (256)
..+++..++... ..++.+|||+|||+|.++..++..+. +++|+|+|+.+++.++++....+.++ .+..+|+.+.+.
T Consensus 23 ~~~~~~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~~ 98 (246)
T 1y8c_A 23 WSDFIIEKCVEN--NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKP-RLACQDISNLNI 98 (246)
T ss_dssp HHHHHHHHHHTT--TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCC-EEECCCGGGCCC
T ss_pred HHHHHHHHHHHh--CCCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCCCe-EEEecccccCCc
Confidence 334555555111 23678999999999999999988776 89999999999999999987665567 899999988765
Q ss_pred CCCCCceeEEEech-hhhccCH-HHHHHHHHHHhhhcCCCcEEEEEecccCCCCc----------------ccc------
Q psy8370 145 EDLNIKYDVIWIQW-VLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKN----------------EYD------ 200 (256)
Q Consensus 145 ~~~~~~~D~V~~~~-~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----------------~~~------ 200 (256)
. . +||+|++.. +++|++. ++...++++++++|+|||.+++.......... ...
T Consensus 99 ~-~--~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (246)
T 1y8c_A 99 N-R--KFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDD 175 (246)
T ss_dssp S-C--CEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETT
T ss_pred c-C--CceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCc
Confidence 4 4 799999998 9999943 67789999999999999999985432110000 000
Q ss_pred --------------------CCCCceeeCHHHHHHHHHhcCCcEEEeeee
Q psy8370 201 --------------------DEDSSVVRSLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 201 --------------------~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
.......++.+++.++++++||++++....
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 225 (246)
T 1y8c_A 176 LVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDC 225 (246)
T ss_dssp EEEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEES
T ss_pred eEEEEEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcc
Confidence 000112359999999999999999887543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=147.48 Aligned_cols=146 Identities=18% Similarity=0.230 Sum_probs=117.6
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
...++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++....+ .++ .+..+|+.+++.... +||+|++
T Consensus 18 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~--~fD~v~~ 93 (239)
T 1xxl_A 18 ECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENV-RFQQGTAESLPFPDD--SFDIITC 93 (239)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSE-EEEECBTTBCCSCTT--CEEEEEE
T ss_pred CcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCe-EEEecccccCCCCCC--cEEEEEE
Confidence 567889999999999999999987775 99999999999999999887655 356 899999988776555 8999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc---------cccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---------EYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
..+++|++ +...++++++++|+|||.+++.+........ ......+...++.+++.++++++||+++..
T Consensus 94 ~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~ 171 (239)
T 1xxl_A 94 RYAAHHFS--DVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDI 171 (239)
T ss_dssp ESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred CCchhhcc--CHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEEE
Confidence 99999995 4568999999999999999998765433211 000112233468999999999999998876
Q ss_pred ee
Q psy8370 228 EK 229 (256)
Q Consensus 228 ~~ 229 (256)
..
T Consensus 172 ~~ 173 (239)
T 1xxl_A 172 QK 173 (239)
T ss_dssp EE
T ss_pred Ee
Confidence 53
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=149.15 Aligned_cols=148 Identities=19% Similarity=0.137 Sum_probs=116.9
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCcee
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
......++.+|||||||+|.++..++.....+|+|+|+|+.+++.++++....+ .++ .+..+|+.++++ .+ +||
T Consensus 30 ~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v-~~~~~d~~~~~~-~~--~fD 105 (256)
T 1nkv_A 30 RVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERV-HFIHNDAAGYVA-NE--KCD 105 (256)
T ss_dssp HHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTE-EEEESCCTTCCC-SS--CEE
T ss_pred HhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcce-EEEECChHhCCc-CC--CCC
Confidence 333567889999999999999999987743489999999999999999987665 357 899999998876 44 899
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc------cccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------EYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
+|++..++++++ +...++++++++|||||.+++.+........ ...........+..++.++++++||+++.
T Consensus 106 ~V~~~~~~~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 183 (256)
T 1nkv_A 106 VAACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVE 183 (256)
T ss_dssp EEEEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCE
T ss_pred EEEECCChHhcC--CHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEE
Confidence 999999999995 4568999999999999999998754332211 01111222346889999999999999876
Q ss_pred ee
Q psy8370 227 SE 228 (256)
Q Consensus 227 ~~ 228 (256)
..
T Consensus 184 ~~ 185 (256)
T 1nkv_A 184 MV 185 (256)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.5e-21 Score=148.52 Aligned_cols=140 Identities=15% Similarity=0.102 Sum_probs=115.2
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
++.+|||||||+|.++..++..+. +|+|+|+|+.+++.++++....+ .++ .+..+|+.++++. . +||+|++..
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~-~--~fD~v~~~~ 140 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYF-SFVKEDVFTWRPT-E--LFDLIFDYV 140 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGE-EEECCCTTTCCCS-S--CEEEEEEES
T ss_pred CCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcce-EEEECchhcCCCC-C--CeeEEEECh
Confidence 346999999999999999977665 89999999999999999987532 456 8999999887643 3 799999999
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeee
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
+++++++++...+++++.++|+|||.+++......... ....+.++.+++.++++++||+++.....
T Consensus 141 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 207 (235)
T 3lcc_A 141 FFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHV-----GGPPYKVDVSTFEEVLVPIGFKAVSVEEN 207 (235)
T ss_dssp STTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCC-----SCSSCCCCHHHHHHHHGGGTEEEEEEEEC
T ss_pred hhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccC-----CCCCccCCHHHHHHHHHHcCCeEEEEEec
Confidence 99999877888999999999999999998765443221 12234478999999999999999887654
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=151.30 Aligned_cols=144 Identities=22% Similarity=0.289 Sum_probs=113.3
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccC-CCCCCCceeEEEec
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFK-PEDLNIKYDVIWIQ 157 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~-~~~~~~~~D~V~~~ 157 (256)
++.+|||||||+|.++..++..+. +|+|+|+|+.+++.++++....+ .++ .++.+|+.+.+ ...+ +||+|++.
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~--~fD~v~~~ 143 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNM-QFIHCAAQDVASHLET--PVDLILFH 143 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGE-EEEESCGGGTGGGCSS--CEEEEEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcce-EEEEcCHHHhhhhcCC--CceEEEEC
Confidence 368999999999999999988866 99999999999999999987654 356 89999998887 3334 89999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCC------------------CccccCCCCceeeCHHHHHHHHHh
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV------------------KNEYDDEDSSVVRSLPQFCLLFSK 219 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~l~~ 219 (256)
.+++|++ +...+++++.++|+|||.+++........ ............++.+++.+++++
T Consensus 144 ~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 221 (285)
T 4htf_A 144 AVLEWVA--DPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEE 221 (285)
T ss_dssp SCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHH
T ss_pred chhhccc--CHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHH
Confidence 9999995 44689999999999999999986432210 000011122344689999999999
Q ss_pred cCCcEEEeeee
Q psy8370 220 ANLKCVKSEKV 230 (256)
Q Consensus 220 ~gf~~~~~~~~ 230 (256)
+||+++.....
T Consensus 222 aGf~v~~~~~~ 232 (285)
T 4htf_A 222 AGWQIMGKTGV 232 (285)
T ss_dssp TTCEEEEEEEE
T ss_pred CCCceeeeeeE
Confidence 99999977654
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-21 Score=151.46 Aligned_cols=101 Identities=15% Similarity=0.236 Sum_probs=88.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech-
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW- 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~- 158 (256)
+++.+|||||||+|.++..++..+. +|+|+|+|+.+++.++++.. ++ .++.+|+.+++. .. +||+|++..
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~----~~-~~~~~d~~~~~~-~~--~fD~v~~~~~ 119 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP----DA-VLHHGDMRDFSL-GR--RFSAVTCMFS 119 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT----TS-EEEECCTTTCCC-SC--CEEEEEECTT
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC----CC-EEEECChHHCCc-cC--CcCEEEEcCc
Confidence 4568999999999999999988776 89999999999999998753 56 899999998766 34 799999998
Q ss_pred hhhccCH-HHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 159 VLMFILD-EDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 159 ~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+++|++. ++...++++++++|+|||.+++..
T Consensus 120 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 120 SIGHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp GGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999965 577889999999999999999964
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-19 Score=137.54 Aligned_cols=164 Identities=14% Similarity=0.154 Sum_probs=122.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.++ +|||||||+|.++..++..+. +++++|+|+.+++.++++....+.++ .+...|+.+.+.... +||+|++.
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~--~fD~v~~~-- 101 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGVKI-TTVQSNLADFDIVAD--AWEGIVSI-- 101 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTCCE-EEECCBTTTBSCCTT--TCSEEEEE--
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCce-EEEEcChhhcCCCcC--CccEEEEE--
Confidence 345 999999999999999988776 99999999999999999987665567 889999988765544 89999995
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc-ccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecC-----C
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-YDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTG-----M 233 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~-----~ 233 (256)
+.+++.++...+++++.++|+|||.+++........... .........++.+++.++++ ||+++....... .
T Consensus 102 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~~~~~~~g~ 179 (202)
T 2kw5_A 102 FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNLERNLDEGA 179 (202)
T ss_dssp CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEEEEECSCSS
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEEEeecCCCC
Confidence 345566778899999999999999999987654332110 11122345689999999998 999987654321 2
Q ss_pred CCcceeeeEEEeccCCCCC
Q psy8370 234 PKSLFKIYMFALKPNKDKN 252 (256)
Q Consensus 234 ~~~~~~~~~~~l~~~~~~~ 252 (256)
+......++.....+.+.+
T Consensus 180 ~~~~~~~~i~~~~~~~~~~ 198 (202)
T 2kw5_A 180 YHQGKAALIQLLGQKLEHH 198 (202)
T ss_dssp SSCCEEEEEEEEECCCSSC
T ss_pred CcccHHHHHHHHHHhhhhc
Confidence 2335566666655555544
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=148.79 Aligned_cols=146 Identities=16% Similarity=0.185 Sum_probs=115.8
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...++.+|||||||+|.++..++..+..+|+|+|+|+.+++.++++....+ .++ .+..+|+.+++...+ +||+|+
T Consensus 43 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~~~--~fD~i~ 119 (267)
T 3kkz_A 43 NLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRV-TGIVGSMDDLPFRNE--ELDLIW 119 (267)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTE-EEEECCTTSCCCCTT--CEEEEE
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCc-EEEEcChhhCCCCCC--CEEEEE
Confidence 367789999999999999999988755599999999999999999988765 347 999999988775555 899999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccC-----CCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDD-----EDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
+..+++++. ...+++++.++|+|||.+++.+............ .......+..++.++++++||+++....
T Consensus 120 ~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 195 (267)
T 3kkz_A 120 SEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFI 195 (267)
T ss_dssp ESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEEE
T ss_pred EcCCceecC---HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 999999993 4579999999999999999987643222110000 0001235789999999999999987654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-19 Score=142.34 Aligned_cols=118 Identities=16% Similarity=0.304 Sum_probs=97.7
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~ 145 (256)
..++..++ ......++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.++++....+.++ .+..+|+.+.+..
T Consensus 27 ~~~~~~~~-~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v-~~~~~d~~~~~~~ 103 (252)
T 1wzn_A 27 IDFVEEIF-KEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKI-EFLQGDVLEIAFK 103 (252)
T ss_dssp HHHHHHHH-HHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCC-EEEESCGGGCCCC
T ss_pred HHHHHHHH-HHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCCce-EEEECChhhcccC
Confidence 45566666 333445678999999999999999988876 89999999999999999987766567 8999999887643
Q ss_pred CCCCceeEEEec-hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 146 DLNIKYDVIWIQ-WVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 146 ~~~~~~D~V~~~-~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
. +||+|++. ..+++++.++...++++++++|+|||.+++..
T Consensus 104 -~--~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 104 -N--EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp -S--CEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -C--CccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 3 79999987 45677777788899999999999999999753
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-20 Score=144.72 Aligned_cols=146 Identities=13% Similarity=0.223 Sum_probs=113.8
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
...++.+|||||||+|.++..++..+..+++|+|+|+.+++.++++... .++ .+..+|+.+.+.... +||+|++.
T Consensus 40 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~-~~~~~d~~~~~~~~~--~fD~v~~~ 114 (243)
T 3bkw_A 40 PEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD--TGI-TYERADLDKLHLPQD--SFDLAYSS 114 (243)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS--SSE-EEEECCGGGCCCCTT--CEEEEEEE
T ss_pred cccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc--CCc-eEEEcChhhccCCCC--CceEEEEe
Confidence 4557889999999999999999888765899999999999999887643 256 889999988765444 89999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc---------------ccc--------------CCCCceee
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---------------EYD--------------DEDSSVVR 208 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------------~~~--------------~~~~~~~~ 208 (256)
.++++++ +...++++++++|+|||.+++.......... ... .....+.+
T Consensus 115 ~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (243)
T 3bkw_A 115 LALHYVE--DVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHR 192 (243)
T ss_dssp SCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEEC
T ss_pred ccccccc--hHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEec
Confidence 9999995 4568999999999999999997532110000 000 01123446
Q ss_pred CHHHHHHHHHhcCCcEEEeeee
Q psy8370 209 SLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 209 ~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
+.+++.++++++||+++.....
T Consensus 193 t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 193 TVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp CHHHHHHHHHHTTCEEEEEEEC
T ss_pred cHHHHHHHHHHcCCEeeeeccC
Confidence 8999999999999999887654
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-19 Score=136.87 Aligned_cols=142 Identities=19% Similarity=0.213 Sum_probs=115.1
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEEEec
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..++.+|||+|||+|.++..++..+. +++++|+|+.+++.++++....+. ++ .+...|+.+.+. .. +||+|++.
T Consensus 30 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~d~~~~~~-~~--~~D~v~~~ 104 (199)
T 2xvm_A 30 VVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDNL-HTRVVDLNNLTF-DR--QYDFILST 104 (199)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCTTE-EEEECCGGGCCC-CC--CEEEEEEE
T ss_pred ccCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCCCc-EEEEcchhhCCC-CC--CceEEEEc
Confidence 45678999999999999999988866 999999999999999998876553 56 899999988766 44 89999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
.++++++.++...+++++.++|+|||.+++.+........ ......+.++.+++.+++.. |+++....
T Consensus 105 ~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~--f~~~~~~~ 172 (199)
T 2xvm_A 105 VVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP--CTVGFPFAFKEGELRRYYEG--WERVKYNE 172 (199)
T ss_dssp SCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC--CCSCCSCCBCTTHHHHHTTT--SEEEEEEC
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcC--CCCCCCCccCHHHHHHHhcC--CeEEEecc
Confidence 9999998777889999999999999998887554433221 11223345688999999976 99887654
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-20 Score=146.03 Aligned_cols=154 Identities=16% Similarity=0.194 Sum_probs=118.4
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCC
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~ 146 (256)
...++.......++.+|||||||+|.++..++..+..+|+|+|+|+.+++.++++....+ .++ .+..+|+.+++...
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~ 112 (257)
T 3f4k_A 34 TRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRV-KGITGSMDNLPFQN 112 (257)
T ss_dssp HHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTE-EEEECCTTSCSSCT
T ss_pred HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCce-EEEECChhhCCCCC
Confidence 444442223567788999999999999999988876699999999999999999988765 337 89999998877655
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcccc-----CCCCceeeCHHHHHHHHHhcC
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD-----DEDSSVVRSLPQFCLLFSKAN 221 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~g 221 (256)
+ +||+|++..+++|++ ...+++++.++|+|||.+++.+........... ........+.+++.++++++|
T Consensus 113 ~--~fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 187 (257)
T 3f4k_A 113 E--ELDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAG 187 (257)
T ss_dssp T--CEEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTT
T ss_pred C--CEEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCC
Confidence 5 899999999999993 457999999999999999998754322211000 000011347899999999999
Q ss_pred CcEEEee
Q psy8370 222 LKCVKSE 228 (256)
Q Consensus 222 f~~~~~~ 228 (256)
|+++...
T Consensus 188 f~~v~~~ 194 (257)
T 3f4k_A 188 YTPTAHF 194 (257)
T ss_dssp EEEEEEE
T ss_pred CeEEEEE
Confidence 9998754
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.1e-20 Score=148.57 Aligned_cols=149 Identities=9% Similarity=0.055 Sum_probs=118.0
Q ss_pred ccCC-CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCce
Q psy8370 75 QKKS-DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 75 ~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
.... ..++.+|||+|||+|.++..++.....+|+|+|+++.+++.++++....+ .++ .+..+|+.+++...+ +|
T Consensus 110 ~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~~~--~f 186 (312)
T 3vc1_A 110 DHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHV-RSRVCNMLDTPFDKG--AV 186 (312)
T ss_dssp TTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTE-EEEECCTTSCCCCTT--CE
T ss_pred HHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCce-EEEECChhcCCCCCC--CE
Confidence 4444 67789999999999999999988733489999999999999999988765 357 899999998775555 89
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccC-------CCCceeeCHHHHHHHHHhcCCcE
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDD-------EDSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
|+|++..++++++ ...+++++.++|||||.+++.+............ ......++.+++.++++++||++
T Consensus 187 D~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~ 263 (312)
T 3vc1_A 187 TASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVP 263 (312)
T ss_dssp EEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEE
T ss_pred eEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEE
Confidence 9999999999994 6789999999999999999987544432210000 00012358899999999999999
Q ss_pred EEeee
Q psy8370 225 VKSEK 229 (256)
Q Consensus 225 ~~~~~ 229 (256)
+....
T Consensus 264 ~~~~~ 268 (312)
T 3vc1_A 264 HTIVD 268 (312)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88764
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-21 Score=147.36 Aligned_cols=146 Identities=18% Similarity=0.186 Sum_probs=112.4
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...++ +|||+|||+|.++..++.....+++++|+|+.+++.++++....+ .++ .+..+|+.+++...+ +||+|+
T Consensus 41 ~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~~--~~D~v~ 116 (219)
T 3dlc_A 41 GITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRI-QIVQGDVHNIPIEDN--YADLIV 116 (219)
T ss_dssp CCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTE-EEEECBTTBCSSCTT--CEEEEE
T ss_pred CCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCce-EEEEcCHHHCCCCcc--cccEEE
Confidence 34444 999999999999999988722389999999999999999988765 357 899999998776555 899999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-----cccCC---------CCceeeCHHHHHHHHHhcC
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-----EYDDE---------DSSVVRSLPQFCLLFSKAN 221 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----~~~~~---------~~~~~~~~~~~~~~l~~~g 221 (256)
+..+++|+ ++...++++++++|+|||.+++.+........ ..... .....++.+++.++++++|
T Consensus 117 ~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 194 (219)
T 3dlc_A 117 SRGSVFFW--EDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIG 194 (219)
T ss_dssp EESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHT
T ss_pred ECchHhhc--cCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcC
Confidence 99999999 45568999999999999999997643322100 00000 0111247799999999999
Q ss_pred CcEEEeee
Q psy8370 222 LKCVKSEK 229 (256)
Q Consensus 222 f~~~~~~~ 229 (256)
|+.++...
T Consensus 195 f~~v~~~~ 202 (219)
T 3dlc_A 195 ISSYEIIL 202 (219)
T ss_dssp CSSEEEEE
T ss_pred CCeEEEEe
Confidence 99887653
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-20 Score=147.33 Aligned_cols=157 Identities=20% Similarity=0.253 Sum_probs=119.9
Q ss_pred HHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCC
Q psy8370 68 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~ 145 (256)
.+..++.......++.+|||||||+|.++..++..+. .+++++|+|+.+++.++++....+ .++ .+...|+.+++..
T Consensus 24 ~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~d~~~~~~~ 102 (276)
T 3mgg_A 24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNV-KFLQANIFSLPFE 102 (276)
T ss_dssp HHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSE-EEEECCGGGCCSC
T ss_pred HHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCc-EEEEcccccCCCC
Confidence 4455543455567889999999999999999988853 399999999999999999988765 356 8999999988766
Q ss_pred CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccc---------------cCCCCceeeCH
Q psy8370 146 DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY---------------DDEDSSVVRSL 210 (256)
Q Consensus 146 ~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---------------~~~~~~~~~~~ 210 (256)
.+ +||+|++..+++++++ ...+++++.++|+|||.+++.+.......... ........++.
T Consensus 103 ~~--~fD~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (276)
T 3mgg_A 103 DS--SFDHIFVCFVLEHLQS--PEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVG 178 (276)
T ss_dssp TT--CEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGG
T ss_pred CC--CeeEEEEechhhhcCC--HHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchH
Confidence 55 8999999999999964 35899999999999999999864332211000 00000111356
Q ss_pred HHHHHHHHhcCCcEEEeee
Q psy8370 211 PQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 211 ~~~~~~l~~~gf~~~~~~~ 229 (256)
.++.++++++||+++....
T Consensus 179 ~~l~~~l~~aGf~~v~~~~ 197 (276)
T 3mgg_A 179 RQIYPLLQESGFEKIRVEP 197 (276)
T ss_dssp GGHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHCCCCeEEEee
Confidence 7899999999999988764
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-19 Score=139.17 Aligned_cols=104 Identities=16% Similarity=0.321 Sum_probs=89.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech-
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW- 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~- 158 (256)
.++.+|||+|||+|.++..++.. .+++|+|+|+.+++.++++....+.++ .+..+|+.+.+.. . +||+|++..
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~~~-~--~fD~v~~~~~ 105 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHV-DFWVQDMRELELP-E--PVDAITILCD 105 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCC-EEEECCGGGCCCS-S--CEEEEEECTT
T ss_pred CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCce-EEEEcChhhcCCC-C--CcCEEEEeCC
Confidence 45689999999999999998776 499999999999999999987665567 8999999887654 4 799999986
Q ss_pred hhhcc-CHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 159 VLMFI-LDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 159 ~l~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+++|+ +.++...++++++++|+|||.+++..
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 106 SLNYLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp GGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 89998 44677889999999999999999853
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-19 Score=136.68 Aligned_cols=146 Identities=15% Similarity=0.148 Sum_probs=113.6
Q ss_pred CCCCCeEEEEcCCCCHhH-HHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 79 DPGKTRVLDVGAGIGRIS-KYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~-~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..++.+|||+|||+|..+ ..++..+. +|+|+|+|+.+++.++++....+.++ .+..+|+.+.+.... +||+|++.
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~--~fD~v~~~ 96 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENNFKL-NISKGDIRKLPFKDE--SMSFVYSY 96 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHTCCC-CEEECCTTSCCSCTT--CEEEEEEC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCce-EEEECchhhCCCCCC--ceeEEEEc
Confidence 356789999999999984 44444455 99999999999999999987655567 899999988765545 89999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc----c--------cCCCCc--eeeCHHHHHHHHHhcCCc
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE----Y--------DDEDSS--VVRSLPQFCLLFSKANLK 223 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~----~--------~~~~~~--~~~~~~~~~~~l~~~gf~ 223 (256)
.+++|++.++...++++++++|+|||.+++.+......... . ...... ..++.+++..++...||.
T Consensus 97 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~ 176 (209)
T 2p8j_A 97 GTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVL 176 (209)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEE
T ss_pred ChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCce
Confidence 99999987788899999999999999999987654332110 0 001111 346899999999999987
Q ss_pred EEEee
Q psy8370 224 CVKSE 228 (256)
Q Consensus 224 ~~~~~ 228 (256)
..+..
T Consensus 177 ~~~~~ 181 (209)
T 2p8j_A 177 FKEDR 181 (209)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 76554
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-20 Score=153.83 Aligned_cols=145 Identities=17% Similarity=0.158 Sum_probs=111.6
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhc-----C----CCcceEEEcccccc-----
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKD-----C----DKLDKCYNVGIQDF----- 142 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~-----~----~~i~~~~~~d~~~~----- 142 (256)
..++.+|||||||+|.++..++... ..+|+|+|+|+.+++.++++.... + .++ .++.+|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v-~~~~~d~~~l~~~~~ 159 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNV-RFLKGFIENLATAEP 159 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCE-EEEESCTTCGGGCBS
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCce-EEEEccHHHhhhccc
Confidence 4577899999999999999998763 239999999999999999987643 2 467 8999999886
Q ss_pred -CCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc-------ccCCCCceeeCHHHHH
Q psy8370 143 -KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-------YDDEDSSVVRSLPQFC 214 (256)
Q Consensus 143 -~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 214 (256)
+...+ +||+|+++.++++++ +...++++++++|||||.+++.+......... .......-.++.+++.
T Consensus 160 ~~~~~~--~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (383)
T 4fsd_A 160 EGVPDS--SVDIVISNCVCNLST--NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFR 235 (383)
T ss_dssp CCCCTT--CEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHH
T ss_pred CCCCCC--CEEEEEEccchhcCC--CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHH
Confidence 44444 899999999999995 45689999999999999999986544332110 0000111235679999
Q ss_pred HHHHhcCCcEEEee
Q psy8370 215 LLFSKANLKCVKSE 228 (256)
Q Consensus 215 ~~l~~~gf~~~~~~ 228 (256)
++++++||+.++..
T Consensus 236 ~ll~~aGF~~v~~~ 249 (383)
T 4fsd_A 236 RLVAEAGFRDVRLV 249 (383)
T ss_dssp HHHHHTTCCCEEEE
T ss_pred HHHHHCCCceEEEE
Confidence 99999999877544
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-19 Score=140.72 Aligned_cols=140 Identities=19% Similarity=0.289 Sum_probs=108.1
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc---CCCCCCCceeEEE
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF---KPEDLNIKYDVIW 155 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~---~~~~~~~~~D~V~ 155 (256)
..++.+|||||||+|.++..++..+. +|+|+|+|+.+++.++++ .++ .+...|+.++ +.... ++||+|+
T Consensus 50 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~-~~~~~~~~~~~~~~~~~~-~~fD~v~ 121 (227)
T 3e8s_A 50 GRQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA-----GAG-EVHLASYAQLAEAKVPVG-KDYDLIC 121 (227)
T ss_dssp HTCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT-----CSS-CEEECCHHHHHTTCSCCC-CCEEEEE
T ss_pred cCCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh-----ccc-ccchhhHHhhcccccccC-CCccEEE
Confidence 34569999999999999999988876 899999999999999887 245 7888888776 33333 3599999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc----------cc------CCCCceeeCHHHHHHHHHh
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE----------YD------DEDSSVVRSLPQFCLLFSK 219 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~----------~~------~~~~~~~~~~~~~~~~l~~ 219 (256)
+..+++ . .+...++++++++|+|||.+++.+......... +. .......++.+++.+++++
T Consensus 122 ~~~~l~-~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (227)
T 3e8s_A 122 ANFALL-H--QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDM 198 (227)
T ss_dssp EESCCC-S--SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHH
T ss_pred ECchhh-h--hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHH
Confidence 999998 4 345689999999999999999987544322110 00 0111234599999999999
Q ss_pred cCCcEEEeee
Q psy8370 220 ANLKCVKSEK 229 (256)
Q Consensus 220 ~gf~~~~~~~ 229 (256)
+||+++....
T Consensus 199 aGf~~~~~~~ 208 (227)
T 3e8s_A 199 AGLRLVSLQE 208 (227)
T ss_dssp TTEEEEEEEC
T ss_pred cCCeEEEEec
Confidence 9999998775
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=144.93 Aligned_cols=148 Identities=14% Similarity=0.037 Sum_probs=115.1
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCC-CCCCCceeEEE
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKP-EDLNIKYDVIW 155 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~-~~~~~~~D~V~ 155 (256)
..++.+|||||||+|.++..++..+..+++|+|+|+.+++.++++....+ .++ .+..+|+.+.+. ..+ +||+|+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~--~fD~v~ 138 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKV-FFRAQDSYGRHMDLGK--EFDVIS 138 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEE-EEEESCTTTSCCCCSS--CEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccE-EEEECCccccccCCCC--CcCEEE
Confidence 36788999999999999999887776699999999999999999987654 246 889999988765 334 899999
Q ss_pred echhhhc--cCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCC------------c--------cccC------------
Q psy8370 156 IQWVLMF--ILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK------------N--------EYDD------------ 201 (256)
Q Consensus 156 ~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~------------~--------~~~~------------ 201 (256)
+..++++ .+.++...++++++++|+|||.+++......... . ....
T Consensus 139 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 218 (298)
T 1ri5_A 139 SQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLD 218 (298)
T ss_dssp EESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETT
T ss_pred ECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEch
Confidence 9999988 4557788999999999999999999864321000 0 0000
Q ss_pred ---CCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 202 ---EDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 202 ---~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
......++.+++.++++++||+++....
T Consensus 219 ~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~ 249 (298)
T 1ri5_A 219 SVNNCIEYFVDFTRMVDGFKRLGLSLVERKG 249 (298)
T ss_dssp SCSSEEEECCCHHHHHHHHHTTTEEEEEEEE
T ss_pred hhcCCcccccCHHHHHHHHHHcCCEEEEecC
Confidence 0011335889999999999999987754
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-20 Score=147.09 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
..+.+|||||||+|.++..++..+. +|+|+|+|+.|++.|++. .++ .+.++|+++++..++ +||+|++..+
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~-----~~v-~~~~~~~e~~~~~~~--sfD~v~~~~~ 108 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRH-----PRV-TYAVAPAEDTGLPPA--SVDVAIAAQA 108 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCC-----TTE-EEEECCTTCCCCCSS--CEEEEEECSC
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhc-----CCc-eeehhhhhhhcccCC--cccEEEEeee
Confidence 4567999999999999999987776 899999999999887642 467 899999999887766 9999999999
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
+|+++. .+++++++|+|||||.|++...
T Consensus 109 ~h~~~~---~~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 109 MHWFDL---DRFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp CTTCCH---HHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhHhhH---HHHHHHHHHHcCCCCEEEEEEC
Confidence 999853 4799999999999999988643
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-20 Score=149.58 Aligned_cols=139 Identities=16% Similarity=0.155 Sum_probs=106.9
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
...++.+|||||||+|.++..++..+. +|+|+|+|+.+++.++++. ++ .+..+|+.+++...+ +||+|++.
T Consensus 31 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----~~-~~~~~d~~~~~~~~~--~fD~v~~~ 101 (261)
T 3ege_A 31 NLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHP-----QV-EWFTGYAENLALPDK--SVDGVISI 101 (261)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCCT-----TE-EEECCCTTSCCSCTT--CBSEEEEE
T ss_pred CCCCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcc-----CC-EEEECchhhCCCCCC--CEeEEEEc
Confidence 456789999999999999999987665 9999999999998776553 56 899999988776555 89999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcccc-C-------CCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD-D-------EDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
.+++|+ ++...++++++++|| ||.+++.+........... . .......+.+++. +++++||+.+....
T Consensus 102 ~~l~~~--~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~ 177 (261)
T 3ege_A 102 LAIHHF--SHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIP 177 (261)
T ss_dssp SCGGGC--SSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEE
T ss_pred chHhhc--cCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEE
Confidence 999999 455689999999999 9988877654322211010 0 0011234667788 99999999887653
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=144.41 Aligned_cols=140 Identities=19% Similarity=0.183 Sum_probs=115.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.++++....+.++ .+..+|+.+.+. .+ +||+|++..+
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~~-~~--~fD~i~~~~~ 193 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLNI-STALYDINAANI-QE--NYDFIVSTVV 193 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCE-EEEECCGGGCCC-CS--CEEEEEECSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCCce-EEEEeccccccc-cC--CccEEEEccc
Confidence 3688999999999999999988877 99999999999999999988766667 899999988776 34 7999999999
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
++|++++....+++++.++|+|||.+++.......... ......+.++..++.+++.. |+++...
T Consensus 194 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~--~~~~~~~ 258 (286)
T 3m70_A 194 FMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVP--CPLPFSFTFAENELKEYYKD--WEFLEYN 258 (286)
T ss_dssp GGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC--CSSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCC--CCCCccccCCHHHHHHHhcC--CEEEEEE
Confidence 99998888889999999999999998886554433222 11223456788899988854 8887764
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=143.81 Aligned_cols=140 Identities=14% Similarity=0.220 Sum_probs=110.4
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
..++.+|||||||+|.++..++..+. +|+|+|+|+.|++.++++. .++ .+..+|+.+++. .+ +||+|++..
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~----~~~-~~~~~d~~~~~~-~~--~fD~v~~~~ 125 (279)
T 3ccf_A 55 PQPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY----PHL-HFDVADARNFRV-DK--PLDAVFSNA 125 (279)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC----TTS-CEEECCTTTCCC-SS--CEEEEEEES
T ss_pred CCCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC----CCC-EEEECChhhCCc-CC--CcCEEEEcc
Confidence 56778999999999999999988555 9999999999999998875 356 889999988765 34 799999999
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc------------cc---cCCCCceeeCHHHHHHHHHhcCCc
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------------EY---DDEDSSVVRSLPQFCLLFSKANLK 223 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------------~~---~~~~~~~~~~~~~~~~~l~~~gf~ 223 (256)
++++++ +...++++++++|+|||.+++.......... .. .........+.+++.++++++||+
T Consensus 126 ~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 203 (279)
T 3ccf_A 126 MLHWVK--EPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFD 203 (279)
T ss_dssp CGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEE
T ss_pred hhhhCc--CHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCE
Confidence 999995 4568999999999999999997654322100 00 011122345899999999999999
Q ss_pred EEEeee
Q psy8370 224 CVKSEK 229 (256)
Q Consensus 224 ~~~~~~ 229 (256)
++....
T Consensus 204 ~~~~~~ 209 (279)
T 3ccf_A 204 VTYAAL 209 (279)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 987653
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=132.92 Aligned_cols=133 Identities=22% Similarity=0.196 Sum_probs=106.9
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
..++.+|||+|||+|.++..++..+. +++++|+++.+++.++++ ..++ .+...| .+...+ +||+|++..
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----~~~v-~~~~~d---~~~~~~--~~D~v~~~~ 83 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK----FDSV-ITLSDP---KEIPDN--SVDFILFAN 83 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH----CTTS-EEESSG---GGSCTT--CEEEEEEES
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh----CCCc-EEEeCC---CCCCCC--ceEEEEEcc
Confidence 46778999999999999999988886 999999999999999988 2356 888888 333334 899999999
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
++++++ +...+++++.++|+|||.+++.+........ .......++.+++.++++ ||++++...
T Consensus 84 ~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~--Gf~~~~~~~ 147 (170)
T 3i9f_A 84 SFHDMD--DKQHVISEVKRILKDDGRVIIIDWRKENTGI---GPPLSIRMDEKDYMGWFS--NFVVEKRFN 147 (170)
T ss_dssp CSTTCS--CHHHHHHHHHHHEEEEEEEEEEEECSSCCSS---SSCGGGCCCHHHHHHHTT--TEEEEEEEC
T ss_pred chhccc--CHHHHHHHHHHhcCCCCEEEEEEcCcccccc---CchHhhhcCHHHHHHHHh--CcEEEEccC
Confidence 999995 4568999999999999999998755443221 112234478999999998 999987653
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-19 Score=143.25 Aligned_cols=147 Identities=10% Similarity=0.014 Sum_probs=114.1
Q ss_pred CCCCCeEEEEcCCCCHhHHHHH-Hhc-CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEE
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLL-AKH-FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~-~~~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
..++.+|||||||+|..+..++ ... ..+|+|+|+|+.+++.++++....+ .++ .++.+|+.+.+.. . +||+|
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~-~--~fD~v 191 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQI-TLHRQDAWKLDTR-E--GYDLL 191 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGE-EEEECCGGGCCCC-S--CEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCce-EEEECchhcCCcc-C--CeEEE
Confidence 4678999999999999999884 222 2399999999999999999987654 236 8999999988755 5 89999
Q ss_pred EechhhhccCH-HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccC-----------------------CCCceeeCH
Q psy8370 155 WIQWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDD-----------------------EDSSVVRSL 210 (256)
Q Consensus 155 ~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~-----------------------~~~~~~~~~ 210 (256)
++..+++|+++ .....++++++++|+|||.+++.+............ ......++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (305)
T 3ocj_A 192 TSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTH 271 (305)
T ss_dssp ECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCH
T ss_pred EECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCH
Confidence 99999999964 444568999999999999999986544322111110 001123689
Q ss_pred HHHHHHHHhcCCcEEEeee
Q psy8370 211 PQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 211 ~~~~~~l~~~gf~~~~~~~ 229 (256)
+++.++++++||+++....
T Consensus 272 ~~~~~~l~~aGF~~v~~~~ 290 (305)
T 3ocj_A 272 AQTRAQLEEAGFTDLRFED 290 (305)
T ss_dssp HHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHCCCEEEEEEc
Confidence 9999999999999988764
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-21 Score=149.14 Aligned_cols=146 Identities=12% Similarity=0.072 Sum_probs=103.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec-
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ- 157 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~- 157 (256)
..++.+|||||||+|..+..+++....++++||+|+.+++.|+++....+.++ .++.+|+.+.......++||.|+..
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~FD~i~~D~ 136 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKV-IPLKGLWEDVAPTLPDGHFDGILYDT 136 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEE-EEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCce-EEEeehHHhhcccccccCCceEEEee
Confidence 36789999999999999999977665689999999999999999988776666 7888888766432223489999753
Q ss_pred ----hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 158 ----WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 158 ----~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
..++|. .+...++++++|+|||||.|++.+....... .............+.+...|.++||++..+.
T Consensus 137 ~~~~~~~~~~--~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~eaGF~~~~i~ 208 (236)
T 3orh_A 137 YPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCNLTSWGEL-MKSKYSDITIMFEETQVPALLEAGFRRENIR 208 (236)
T ss_dssp CCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECCHHHHHHH-TTTTCSCHHHHHHHHTHHHHHHHTCCGGGEE
T ss_pred eecccchhhh--cchhhhhhhhhheeCCCCEEEEEecCCchhh-hhhhhhhhhhhhHHHHHHHHHHcCCeEEEEE
Confidence 445555 6677899999999999999988532111100 0000111111223455667888999865443
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-18 Score=129.90 Aligned_cols=130 Identities=18% Similarity=0.227 Sum_probs=109.7
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec-h
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ-W 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~-~ 158 (256)
.++.+|||+|||+|.++..++..+. +++++|+++.+++.++++.. ++ .+...|+.+.+.... +||+|++. .
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~----~~-~~~~~d~~~~~~~~~--~~D~i~~~~~ 116 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFP----EA-RWVVGDLSVDQISET--DFDLIVSAGN 116 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT----TS-EEEECCTTTSCCCCC--CEEEEEECCC
T ss_pred cCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCC----CC-cEEEcccccCCCCCC--ceeEEEECCc
Confidence 5788999999999999999988865 99999999999999988753 45 889999988765444 89999998 7
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeee
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
++++++.++...+++++.++|+|||.+++...... .++.+++.++++++||+++.....
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~-------------~~~~~~~~~~l~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 117 VMGFLAEDGREPALANIHRALGADGRAVIGFGAGR-------------GWVFGDFLEVAERVGLELENAFES 175 (195)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS-------------SCCHHHHHHHHHHHTEEEEEEESS
T ss_pred HHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC-------------CcCHHHHHHHHHHcCCEEeeeecc
Confidence 89999878888999999999999999999643221 156789999999999999876543
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-19 Score=142.52 Aligned_cols=145 Identities=17% Similarity=0.210 Sum_probs=111.0
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
...++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.++++......++ .+..+|+.+++...+ +||+|++.
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~--~fD~v~~~ 111 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKIAGVDRKV-QVVQADARAIPLPDE--SVHGVIVV 111 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHTTTSCTTE-EEEESCTTSCCSCTT--CEEEEEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCce-EEEEcccccCCCCCC--CeeEEEEC
Confidence 456788999999999999999988765 89999999999999999873223467 899999988765555 89999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCC-----c---------cccCCCCceeeCHHHHHHHHHhcCCc
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK-----N---------EYDDEDSSVVRSLPQFCLLFSKANLK 223 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-----~---------~~~~~~~~~~~~~~~~~~~l~~~gf~ 223 (256)
.++++++ +...++++++++|+|||.+++......... . ...........+.+++.++++++||+
T Consensus 112 ~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 189 (263)
T 2yqz_A 112 HLWHLVP--DWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK 189 (263)
T ss_dssp SCGGGCT--THHHHHHHHHHHEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred CchhhcC--CHHHHHHHHHHHCCCCcEEEEEecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence 9999995 456899999999999999998722110000 0 00001122345788999999999999
Q ss_pred EEEee
Q psy8370 224 CVKSE 228 (256)
Q Consensus 224 ~~~~~ 228 (256)
++...
T Consensus 190 ~~~~~ 194 (263)
T 2yqz_A 190 PRTRE 194 (263)
T ss_dssp CEEEE
T ss_pred cceEE
Confidence 77543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-18 Score=134.30 Aligned_cols=108 Identities=17% Similarity=0.223 Sum_probs=93.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.++.+|||+|||+|.++..++..+. +++++|+|+.+++.++++....+.++ .++.+|+.+++.... +||+|++..+
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~--~~D~v~~~~~ 112 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNV-EFIVGDARKLSFEDK--TFDYVIFIDS 112 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCC-EEEECCTTSCCSCTT--CEEEEEEESC
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCc-eEEECchhcCCCCCC--cEEEEEEcCc
Confidence 3478999999999999999988877 99999999999999999987765677 999999988765444 8999999999
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
+++....+...++++++++|+|||.+++.+..
T Consensus 113 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 113 IVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp GGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 66666677789999999999999999997653
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.3e-19 Score=145.42 Aligned_cols=148 Identities=14% Similarity=0.250 Sum_probs=117.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccC-CCCCCCceeEEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFK-PEDLNIKYDVIW 155 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~-~~~~~~~~D~V~ 155 (256)
....+|||||||+|.++..+++.... +++++|+ +.+++.++++....+ .++ .+..+|+.+.. +... +||+|+
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~~p~--~~D~v~ 253 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERI-HGHGANLLDRDVPFPT--GFDAVW 253 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGE-EEEECCCCSSSCCCCC--CCSEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccce-EEEEccccccCCCCCC--CcCEEE
Confidence 45689999999999999999886543 8999999 999999999987654 367 89999998753 2124 799999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccc--------------cCCCCceeeCHHHHHHHHHhcC
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY--------------DDEDSSVVRSLPQFCLLFSKAN 221 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~g 221 (256)
+..++|++++++...+++++++.|+|||.+++.+.......... ........++.+++.++++++|
T Consensus 254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AG 333 (363)
T 3dp7_A 254 MSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAG 333 (363)
T ss_dssp EESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTT
T ss_pred EechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcC
Confidence 99999999988888999999999999999999886554432110 1122233569999999999999
Q ss_pred CcEEEeeeec
Q psy8370 222 LKCVKSEKVT 231 (256)
Q Consensus 222 f~~~~~~~~~ 231 (256)
|++++.....
T Consensus 334 f~~v~~~~~~ 343 (363)
T 3dp7_A 334 LEVEEIQDNI 343 (363)
T ss_dssp EEESCCCCCB
T ss_pred CeEEEEEeCC
Confidence 9998765433
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=139.88 Aligned_cols=103 Identities=16% Similarity=0.241 Sum_probs=88.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEe-ch
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI-QW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~-~~ 158 (256)
.++.+|||+|||+|.++..++..+. +++|+|+|+.+++.++++. .++ .+..+|+.+.+. .. +||+|+| ..
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~----~~~-~~~~~d~~~~~~-~~--~~D~v~~~~~ 109 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL----PDA-TLHQGDMRDFRL-GR--KFSAVVSMFS 109 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC----TTC-EEEECCTTTCCC-SS--CEEEEEECTT
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC----CCC-EEEECCHHHccc-CC--CCcEEEEcCc
Confidence 5678999999999999999988877 9999999999999998874 246 889999988765 34 7999995 45
Q ss_pred hhhccCH-HHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 159 VLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 159 ~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
+++|++. ++...++++++++|+|||.+++.+..
T Consensus 110 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (239)
T 3bxo_A 110 SVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWW 143 (239)
T ss_dssp GGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred hHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 8999854 67789999999999999999997543
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-19 Score=140.69 Aligned_cols=154 Identities=12% Similarity=0.082 Sum_probs=112.6
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC----------------------------
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD---------------------------- 129 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---------------------------- 129 (256)
...++.+|||+|||+|.++..++..++.+|+|+|+|+.+++.++++....+.
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 3456789999999999999998777665899999999999999988764321
Q ss_pred --CcceEEEccccccCC-CC-CCCceeEEEechhhhccCH--HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCC
Q psy8370 130 --KLDKCYNVGIQDFKP-ED-LNIKYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDED 203 (256)
Q Consensus 130 --~i~~~~~~d~~~~~~-~~-~~~~~D~V~~~~~l~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 203 (256)
++..+..+|+.+..+ .. ..++||+|++..+++++++ ++...++++++++|+|||.+++.+..............
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~ 212 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKF 212 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccc
Confidence 021678888887654 22 1138999999999995533 47789999999999999999998743322110000000
Q ss_pred CceeeCHHHHHHHHHhcCCcEEEeeeec
Q psy8370 204 SSVVRSLPQFCLLFSKANLKCVKSEKVT 231 (256)
Q Consensus 204 ~~~~~~~~~~~~~l~~~gf~~~~~~~~~ 231 (256)
.....+.+++.++++++||+++......
T Consensus 213 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 213 SSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp ECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred cccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 1123578899999999999998877543
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-19 Score=139.53 Aligned_cols=149 Identities=12% Similarity=0.183 Sum_probs=112.1
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL 147 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~ 147 (256)
...++ ......++.+|||||||+|.++..++... ..+++++|+|+.+++.++++. .++ .+..+|+.+++ ...
T Consensus 22 ~~~l~-~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~----~~~-~~~~~d~~~~~-~~~ 94 (259)
T 2p35_A 22 ARDLL-AQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL----PNT-NFGKADLATWK-PAQ 94 (259)
T ss_dssp HHHHH-TTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS----TTS-EEEECCTTTCC-CSS
T ss_pred HHHHH-HhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----CCc-EEEECChhhcC-ccC
Confidence 33444 44456778899999999999999998873 238999999999999998872 356 89999998877 444
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCC---------------ccccC--CCCceeeCH
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK---------------NEYDD--EDSSVVRSL 210 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------------~~~~~--~~~~~~~~~ 210 (256)
+||+|++..++++++ +...++++++++|+|||.+++......... ..... .......+.
T Consensus 95 --~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T 2p35_A 95 --KADLLYANAVFQWVP--DHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPP 170 (259)
T ss_dssp --CEEEEEEESCGGGST--THHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCH
T ss_pred --CcCEEEEeCchhhCC--CHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCH
Confidence 899999999999994 456899999999999999999864322110 00010 112234689
Q ss_pred HHHHHHHHhcCCcEEEee
Q psy8370 211 PQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 211 ~~~~~~l~~~gf~~~~~~ 228 (256)
+++.++++++||++....
T Consensus 171 ~~~~~~l~~aGf~v~~~~ 188 (259)
T 2p35_A 171 SDYFNALSPKSSRVDVWH 188 (259)
T ss_dssp HHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHhcCCceEEEE
Confidence 999999999999765433
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-19 Score=143.70 Aligned_cols=151 Identities=9% Similarity=0.106 Sum_probs=105.1
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC------------------------------
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD------------------------------ 129 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------------------------ 129 (256)
.++.+|||||||+|..+..++.....+|+|+|+|+.|++.+++++.....
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 36789999999999966554443445999999999999999886542110
Q ss_pred CcceEEEccccc-cCCCC---CCCceeEEEechhhhccCH--HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCC
Q psy8370 130 KLDKCYNVGIQD-FKPED---LNIKYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDED 203 (256)
Q Consensus 130 ~i~~~~~~d~~~-~~~~~---~~~~~D~V~~~~~l~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 203 (256)
.+..+..+|+.+ .+... ..++||+|+++.++++++. ++...++++++++|||||.|++................
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~ 229 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL 229 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeee
Confidence 011456668877 33211 1246999999999999543 47889999999999999999997533221111000000
Q ss_pred CceeeCHHHHHHHHHhcCCcEEEeeee
Q psy8370 204 SSVVRSLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 204 ~~~~~~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
....++.+++.++++++||+++.....
T Consensus 230 ~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 230 TVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred eeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 122468999999999999999876643
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=141.34 Aligned_cols=154 Identities=13% Similarity=0.057 Sum_probs=115.9
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~ 146 (256)
..+..+. ....++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.++++... .++ .+.++|+.+.....
T Consensus 45 ~~~~~~~---~~~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~--~~~-~~~~~d~~~~~~~~ 117 (245)
T 3ggd_A 45 VDLPRFE---LLFNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA--ANI-SYRLLDGLVPEQAA 117 (245)
T ss_dssp HHHHHHT---TTSCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC--TTE-EEEECCTTCHHHHH
T ss_pred HHHHHHh---hccCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc--cCc-eEEECccccccccc
Confidence 4444444 2346778999999999999999988887 899999999999999988732 356 89999998765422
Q ss_pred C---CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-----------------cccCCCCce
Q psy8370 147 L---NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-----------------EYDDEDSSV 206 (256)
Q Consensus 147 ~---~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----------------~~~~~~~~~ 206 (256)
. ...||+|++..+++++++++...++++++++|||||.+++.+........ .........
T Consensus 118 ~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (245)
T 3ggd_A 118 QIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPG 197 (245)
T ss_dssp HHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCC
T ss_pred ccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCC
Confidence 1 01489999999999998778889999999999999999888654332110 000111112
Q ss_pred eeCHHHHHHHHHhcCCcEEEeee
Q psy8370 207 VRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 207 ~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
.++.+++.+++ +||+++....
T Consensus 198 ~~~~~~~~~~~--aGf~~~~~~~ 218 (245)
T 3ggd_A 198 IFTAEDIELYF--PDFEILSQGE 218 (245)
T ss_dssp CCCHHHHHHHC--TTEEEEEEEC
T ss_pred ccCHHHHHHHh--CCCEEEeccc
Confidence 36889999999 9999987654
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-19 Score=144.45 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=115.2
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~ 146 (256)
+..+........++.+|||||||+|.++..++.... .+|+|+|+|+.+++.++++....+.++ .+..+|+.+++. .
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v-~~~~~d~~~~~~-~ 87 (284)
T 3gu3_A 10 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDS-EFLEGDATEIEL-N 87 (284)
T ss_dssp HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEE-EEEESCTTTCCC-S
T ss_pred HHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCce-EEEEcchhhcCc-C
Confidence 333332333567889999999999999999977632 389999999999999999987665577 899999998765 3
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEeccc-----CCCCc--cc-c---------------CCC
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA-----SGVKN--EY-D---------------DED 203 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-----~~~~~--~~-~---------------~~~ 203 (256)
+ +||+|++..++++++ +...++++++++|+|||.+++.+... ..... .. . ...
T Consensus 88 ~--~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (284)
T 3gu3_A 88 D--KYDIAICHAFLLHMT--TPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRN 163 (284)
T ss_dssp S--CEEEEEEESCGGGCS--SHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHT
T ss_pred C--CeeEEEECChhhcCC--CHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhh
Confidence 4 799999999999995 44689999999999999999987551 11000 00 0 000
Q ss_pred CceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 204 SSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 204 ~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
.....+..++.++++++||+.+...
T Consensus 164 ~~~~~~~~~l~~~l~~aGF~~v~~~ 188 (284)
T 3gu3_A 164 GKDGNIGMKIPIYLSELGVKNIECR 188 (284)
T ss_dssp CCCTTGGGTHHHHHHHTTCEEEEEE
T ss_pred cccccHHHHHHHHHHHcCCCeEEEE
Confidence 1112345678999999999988764
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-19 Score=143.69 Aligned_cols=147 Identities=12% Similarity=0.145 Sum_probs=104.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC-------cceEEEccc------cccC--C
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-------LDKCYNVGI------QDFK--P 144 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-------i~~~~~~d~------~~~~--~ 144 (256)
+++.+|||||||+|..+..++..+..+|+|+|+|+.|++.|+++....+.+ + .+.+.|+ .++. .
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~-~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKF-DYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEE-EEEECCTTSSSHHHHHHTTC
T ss_pred CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhcccccccccccc-chhhhhcccchhhhhhhccc
Confidence 357899999999998776666666559999999999999999988754322 3 5667776 2221 1
Q ss_pred CCCCCceeEEEechhhhcc-CHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc--------------------------
Q psy8370 145 EDLNIKYDVIWIQWVLMFI-LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------------------------- 197 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------------------------- 197 (256)
.. ++||+|+|..++|++ ..++...++++++++|||||.++++.........
T Consensus 126 ~~--~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 203 (302)
T 2vdw_A 126 YF--GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIA 203 (302)
T ss_dssp CS--SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEE
T ss_pred cC--CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccc
Confidence 22 389999999999875 3234578999999999999999987542111000
Q ss_pred -----cccCC---C--CceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 198 -----EYDDE---D--SSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 198 -----~~~~~---~--~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
..... . ..+..+.+++.++++++||+++....
T Consensus 204 ~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~ 245 (302)
T 2vdw_A 204 DDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVD 245 (302)
T ss_dssp TTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecC
Confidence 00000 0 11235779999999999999987653
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=137.24 Aligned_cols=127 Identities=15% Similarity=0.141 Sum_probs=100.6
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhh
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 160 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l 160 (256)
++.+|||+|||+|.++..+ +..+++++|+|+.+++.++++. .++ .+..+|+.+++...+ +||+|++..++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~----~~~-~~~~~d~~~~~~~~~--~fD~v~~~~~l 105 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA----PEA-TWVRAWGEALPFPGE--SFDVVLLFTTL 105 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC----TTS-EEECCCTTSCCSCSS--CEEEEEEESCT
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC----CCc-EEEEcccccCCCCCC--cEEEEEEcChh
Confidence 7889999999999999887 4448999999999999999876 356 889999988775555 89999999999
Q ss_pred hccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc---------cccCCCCceeeCHHHHHHHHHhcC
Q psy8370 161 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---------EYDDEDSSVVRSLPQFCLLFSKAN 221 (256)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~g 221 (256)
+|++ +...+++++.++|+|||.+++.......... ......+...++.+++.++++ |
T Consensus 106 ~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 106 EFVE--DVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp TTCS--CHHHHHHHHHHHEEEEEEEEEEEECTTSHHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred hhcC--CHHHHHHHHHHHcCCCCEEEEEecCCcCcHHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 9995 4568999999999999999998754432210 000111233479999999998 7
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.8e-20 Score=146.29 Aligned_cols=148 Identities=15% Similarity=0.187 Sum_probs=107.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC------------------------------
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDC------------------------------ 128 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~------------------------------ 128 (256)
.++.+|||||||+|.++..++... ..+|+|+|+|+.+++.|+++.....
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 367899999999999999998873 3499999999999999998755321
Q ss_pred -----------------------------CCcceEEEccccccC-----CCCCCCceeEEEechhhhcc----CHHHHHH
Q psy8370 129 -----------------------------DKLDKCYNVGIQDFK-----PEDLNIKYDVIWIQWVLMFI----LDEDIIK 170 (256)
Q Consensus 129 -----------------------------~~i~~~~~~d~~~~~-----~~~~~~~~D~V~~~~~l~~~----~~~~~~~ 170 (256)
.++ .+..+|+.... ... ++||+|+|..+++|+ .++...+
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v-~f~~~d~~~~~~~~~~~~~--~~fD~I~~~~vl~~ihl~~~~~~~~~ 201 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNV-VFVTGNYVLDRDDLVEAQT--PEYDVVLCLSLTKWVHLNWGDEGLKR 201 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTE-EEEECCCCCSSHHHHTTCC--CCEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccc-eEEecccccCccccccccC--CCcCEEEEChHHHHhhhcCCHHHHHH
Confidence 256 88899887544 223 389999999999777 4457889
Q ss_pred HHHHHhhhcCCCcEEEEEecccCCCCcc------ccCCCCceeeCHHHHHHHHHh--cCCcEEEeeee
Q psy8370 171 FLNLCKQILNKNGIIIIKDNVASGVKNE------YDDEDSSVVRSLPQFCLLFSK--ANLKCVKSEKV 230 (256)
Q Consensus 171 ~l~~~~~~LkpgG~l~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~--~gf~~~~~~~~ 230 (256)
++++++++|+|||.|++........... .........+.++++..+|.+ +||+.++....
T Consensus 202 ~l~~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 202 MFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 9999999999999999975432211100 000011223468899999998 99988766543
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.79 E-value=7e-19 Score=135.53 Aligned_cols=136 Identities=19% Similarity=0.171 Sum_probs=106.6
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhh
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 161 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~ 161 (256)
+.+|||+|||+|.++..++.. +++|+|+.+++.++++ ++ .+..+|+.+++.... +||+|++..+++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~------~~-~~~~~d~~~~~~~~~--~fD~v~~~~~l~ 113 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR------GV-FVLKGTAENLPLKDE--SFDFALMVTTIC 113 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT------TC-EEEECBTTBCCSCTT--CEEEEEEESCGG
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc------CC-EEEEcccccCCCCCC--CeeEEEEcchHh
Confidence 789999999999999987543 9999999999999876 45 888999988765544 899999999999
Q ss_pred ccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc--------cccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCC
Q psy8370 162 FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN--------EYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGM 233 (256)
Q Consensus 162 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~ 233 (256)
+++ +...+++++.++|+|||.+++.......... ..........++.+++.++++++||+++........
T Consensus 114 ~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~ 191 (219)
T 1vlm_A 114 FVD--DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLFK 191 (219)
T ss_dssp GSS--CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEECCS
T ss_pred hcc--CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecccCC
Confidence 995 4468999999999999999998654322110 001112233468999999999999999887765443
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-18 Score=142.16 Aligned_cols=148 Identities=12% Similarity=0.173 Sum_probs=117.3
Q ss_pred cCCCCC-CCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCC-CCCCCc
Q psy8370 76 KKSDPG-KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKP-EDLNIK 150 (256)
Q Consensus 76 ~~~~~~-~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~-~~~~~~ 150 (256)
.....+ +.+|||||||+|.++..+++.... +++++|+ +.+++.++++....+ .++ .+..+|+.+.+. ... .
T Consensus 173 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~--~ 248 (352)
T 3mcz_A 173 ELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRV-EFFEKNLLDARNFEGG--A 248 (352)
T ss_dssp TCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGE-EEEECCTTCGGGGTTC--C
T ss_pred hCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCce-EEEeCCcccCcccCCC--C
Confidence 334445 789999999999999999887543 8999999 889999999887654 357 899999987652 223 5
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc-----------ccCCCCceeeCHHHHHHHHHh
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-----------YDDEDSSVVRSLPQFCLLFSK 219 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~ 219 (256)
||+|++..++|++++++...+++++++.|+|||.+++.+......... .........++.+++.+++++
T Consensus 249 ~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 328 (352)
T 3mcz_A 249 ADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRD 328 (352)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHH
T ss_pred ccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHH
Confidence 999999999999998888899999999999999999987655443210 000123345789999999999
Q ss_pred cCCcEEEe
Q psy8370 220 ANLKCVKS 227 (256)
Q Consensus 220 ~gf~~~~~ 227 (256)
+||++++.
T Consensus 329 aGf~~~~~ 336 (352)
T 3mcz_A 329 AGLAVGER 336 (352)
T ss_dssp TTCEEEEE
T ss_pred CCCceeee
Confidence 99999874
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=139.07 Aligned_cols=118 Identities=21% Similarity=0.289 Sum_probs=95.8
Q ss_pred hhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-----CCcceEEEcc
Q psy8370 64 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-----DKLDKCYNVG 138 (256)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~i~~~~~~d 138 (256)
...+++...+ ...++.+|||||||+|.++..++..+. +|+|+|+|+.+++.++++..... .++ .+..+|
T Consensus 44 ~~~~~l~~~l----~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~~~~~d 117 (293)
T 3thr_A 44 EYKAWLLGLL----RQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKW-VIEEAN 117 (293)
T ss_dssp HHHHHHHHHH----HHTTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTC-EEEECC
T ss_pred HHHHHHHHHh----cccCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhccccccccee-eEeecC
Confidence 3345555555 334678999999999999999988887 99999999999999998764321 245 678888
Q ss_pred ccccC---CCCCCCceeEEEec-hhhhccCH-----HHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 139 IQDFK---PEDLNIKYDVIWIQ-WVLMFILD-----EDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 139 ~~~~~---~~~~~~~~D~V~~~-~~l~~~~~-----~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+.+++ ...+ +||+|++. .+++|+++ ++...++++++++|||||.+++..
T Consensus 118 ~~~~~~~~~~~~--~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 118 WLTLDKDVPAGD--GFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp GGGHHHHSCCTT--CEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhhCccccccCC--CeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 88776 4444 89999998 89999976 668899999999999999999875
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-18 Score=140.09 Aligned_cols=147 Identities=20% Similarity=0.169 Sum_probs=115.5
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeE
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
....+..+|||||||+|.++..+++.... +++++|+ +.+++.+++++...+ .++ .+..+|+.+.. .. +||+
T Consensus 165 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~--p~--~~D~ 238 (332)
T 3i53_A 165 YDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRA-QVVVGSFFDPL--PA--GAGG 238 (332)
T ss_dssp SCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTE-EEEECCTTSCC--CC--SCSE
T ss_pred CCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCe-EEecCCCCCCC--CC--CCcE
Confidence 34456789999999999999999876543 8999999 999999999987654 467 99999997322 22 5999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc--cc----CCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE--YD----DEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
|++..++|++++++..++++++++.|+|||.+++.+......... .+ .......++.++|.++++++||++++.
T Consensus 239 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 318 (332)
T 3i53_A 239 YVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAA 318 (332)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEE
T ss_pred EEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 999999999998878899999999999999999987655443100 00 001123468999999999999999887
Q ss_pred ee
Q psy8370 228 EK 229 (256)
Q Consensus 228 ~~ 229 (256)
..
T Consensus 319 ~~ 320 (332)
T 3i53_A 319 HP 320 (332)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-18 Score=130.59 Aligned_cols=154 Identities=14% Similarity=0.205 Sum_probs=112.7
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
....++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.++++....+ ++ .++.+|+.+.++ .. +||+|++
T Consensus 47 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~-~~~~~d~~~~~~-~~--~fD~v~~ 120 (216)
T 3ofk_A 47 LSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWS-HI-SWAATDILQFST-AE--LFDLIVV 120 (216)
T ss_dssp TTTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTCS-SE-EEEECCTTTCCC-SC--CEEEEEE
T ss_pred cccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccCC-Ce-EEEEcchhhCCC-CC--CccEEEE
Confidence 3566778999999999999999988876 99999999999999999877644 67 899999998873 33 7999999
Q ss_pred chhhhccCH-HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEE-EeeeecCCC
Q psy8370 157 QWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV-KSEKVTGMP 234 (256)
Q Consensus 157 ~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~-~~~~~~~~~ 234 (256)
..+++|+++ +.+..+++++.++|+|||.+++.......... + . .....+.+...+.+. +..+ .........
T Consensus 121 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-~---~--~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~ 193 (216)
T 3ofk_A 121 AEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRR-W---G--HVAGAETVITILTEA-LTEVERVQCQGQSA 193 (216)
T ss_dssp ESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHH-T---T--CSCCHHHHHHHHHHH-SEEEEEEEEECSST
T ss_pred ccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCcchh-h---h--hhhhHHHHHHHHHhh-ccceEEEeccCCcc
Confidence 999999975 66678999999999999999997543321100 0 0 023455666666543 4433 333334444
Q ss_pred CcceeeeEE
Q psy8370 235 KSLFKIYMF 243 (256)
Q Consensus 235 ~~~~~~~~~ 243 (256)
...+.+..+
T Consensus 194 ~~d~~l~~~ 202 (216)
T 3ofk_A 194 DEDCLLARF 202 (216)
T ss_dssp TCEEEEEEE
T ss_pred ccchhHHHH
Confidence 555544443
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.4e-18 Score=139.35 Aligned_cols=145 Identities=15% Similarity=0.142 Sum_probs=116.0
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
.++.+|||+|||+|.++..++.... .+++++|++ .+++.+++++...+ .++ .+..+|+.+.+.. . .||+|++
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~-~--~~D~v~~ 238 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRY-HTIAGSAFEVDYG-N--DYDLVLL 238 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGE-EEEESCTTTSCCC-S--CEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcce-EEEecccccCCCC-C--CCcEEEE
Confidence 6778999999999999999987743 289999999 99999999987654 357 8999999876433 3 4999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccc-----------cCCCCceeeCHHHHHHHHHhcCCcEE
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY-----------DDEDSSVVRSLPQFCLLFSKANLKCV 225 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~gf~~~ 225 (256)
..++|++++++...+++++++.|+|||.+++.+.......... ........++.+++.++++++||+++
T Consensus 239 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~ 318 (335)
T 2r3s_A 239 PNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHS 318 (335)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEE
T ss_pred cchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCee
Confidence 9999999888888999999999999999999876554321100 00012345689999999999999998
Q ss_pred Eeee
Q psy8370 226 KSEK 229 (256)
Q Consensus 226 ~~~~ 229 (256)
+...
T Consensus 319 ~~~~ 322 (335)
T 2r3s_A 319 QLHS 322 (335)
T ss_dssp EEEC
T ss_pred eEEE
Confidence 8653
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7e-18 Score=139.83 Aligned_cols=149 Identities=20% Similarity=0.220 Sum_probs=118.6
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCce
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
......+..+|||+|||+|.++..+++.... +++++|+ +.+++.+++++...+ .++ .+..+|+.+.. .. .|
T Consensus 196 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v-~~~~~d~~~~~--p~--~~ 269 (369)
T 3gwz_A 196 AAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRC-EILPGDFFETI--PD--GA 269 (369)
T ss_dssp HHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTE-EEEECCTTTCC--CS--SC
T ss_pred HhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCce-EEeccCCCCCC--CC--Cc
Confidence 3445667899999999999999999887543 8999999 999999999987654 467 99999998322 22 59
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccc--------cCCCCceeeCHHHHHHHHHhcCCc
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY--------DDEDSSVVRSLPQFCLLFSKANLK 223 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~gf~ 223 (256)
|+|++..++|+++++...++++++++.|+|||.+++.+.......... ........++.++|.++++++||+
T Consensus 270 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~ 349 (369)
T 3gwz_A 270 DVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLR 349 (369)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEE
T ss_pred eEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCe
Confidence 999999999999988878999999999999999999887655432111 000112347899999999999999
Q ss_pred EEEeee
Q psy8370 224 CVKSEK 229 (256)
Q Consensus 224 ~~~~~~ 229 (256)
+++...
T Consensus 350 ~~~~~~ 355 (369)
T 3gwz_A 350 VERSLP 355 (369)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 988753
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.7e-19 Score=137.57 Aligned_cols=142 Identities=13% Similarity=0.077 Sum_probs=101.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc--CCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF--KPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~--~~~~~~~~~D~V~~ 156 (256)
..++.+|||||||+|.++..++..+..+|+|+|+|+.|++.|+++....+.++ .++.+|+.++ +..++ +||+|++
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v-~~~~~d~~~~~~~~~~~--~fD~V~~ 134 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKV-IPLKGLWEDVAPTLPDG--HFDGILY 134 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEE-EEEESCHHHHGGGSCTT--CEEEEEE
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCe-EEEecCHHHhhcccCCC--ceEEEEE
Confidence 35678999999999999999966555589999999999999999887665567 8999999887 44444 8999999
Q ss_pred -chh--hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcE
Q psy8370 157 -QWV--LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 157 -~~~--l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
.+. .+.........++++++++|||||.+++.+........ ............+.....+.++||..
T Consensus 135 d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~aGF~~ 204 (236)
T 1zx0_A 135 DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELM-KSKYSDITIMFEETQVPALLEAGFRR 204 (236)
T ss_dssp CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHT-TTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred CCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhh-chhhhhhhhhccHHHHHHHHHCCCCC
Confidence 443 22333355667899999999999999986533211000 00001111112344556788999984
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-19 Score=149.69 Aligned_cols=156 Identities=12% Similarity=0.131 Sum_probs=114.1
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~ 146 (256)
++...++ ......++.+|||||||+|.++..++..+. +|+|+|+|+.+++.++++ ........+...+...++...
T Consensus 94 ~~~~~l~-~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~ 169 (416)
T 4e2x_A 94 MLARDFL-ATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK--GIRVRTDFFEKATADDVRRTE 169 (416)
T ss_dssp HHHHHHH-HTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT--TCCEECSCCSHHHHHHHHHHH
T ss_pred HHHHHHH-HHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc--CCCcceeeechhhHhhcccCC
Confidence 4445555 555667788999999999999999988877 999999999999999876 111111012234444444334
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCC----CccccCCCCceeeCHHHHHHHHHhcCC
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV----KNEYDDEDSSVVRSLPQFCLLFSKANL 222 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~gf 222 (256)
+ +||+|++..+++|++ +...++++++++|||||.+++........ ........+...++.+++.++++++||
T Consensus 170 ~--~fD~I~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf 245 (416)
T 4e2x_A 170 G--PANVIYAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGF 245 (416)
T ss_dssp C--CEEEEEEESCGGGCT--THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTE
T ss_pred C--CEEEEEECChHHhcC--CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCC
Confidence 4 899999999999995 56789999999999999999975432110 000111244556899999999999999
Q ss_pred cEEEeeee
Q psy8370 223 KCVKSEKV 230 (256)
Q Consensus 223 ~~~~~~~~ 230 (256)
++++....
T Consensus 246 ~~~~~~~~ 253 (416)
T 4e2x_A 246 ELVDVQRL 253 (416)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEc
Confidence 99887754
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=136.28 Aligned_cols=108 Identities=11% Similarity=0.163 Sum_probs=86.6
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC---CCCCCce
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP---EDLNIKY 151 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~---~~~~~~~ 151 (256)
......++.+|||||||+|.++..++.++. +|+|+|+|+.|++.++++.... .+..++.+... ....++|
T Consensus 39 ~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~------~v~~~~~~~~~~~~~~~~~~f 111 (261)
T 3iv6_A 39 FLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR------CVTIDLLDITAEIPKELAGHF 111 (261)
T ss_dssp HTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS------CCEEEECCTTSCCCGGGTTCC
T ss_pred HhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc------cceeeeeecccccccccCCCc
Confidence 334567889999999999999999988877 8999999999999999886542 23333333322 1112479
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
|+|+++.+++|++.++...+++++.++| |||.++++..
T Consensus 112 D~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 112 DFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred cEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 9999999999998888889999999999 9999999753
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=139.25 Aligned_cols=145 Identities=19% Similarity=0.250 Sum_probs=100.7
Q ss_pred CCCCeEEEEcCCCCHhHHHH----HHhcCC-e--EEEEeCCHHHHHHHHHHHHhc-C-CCc-ceEEEccccccC------
Q psy8370 80 PGKTRVLDVGAGIGRISKYL----LAKHFD-K--IDLLEQSSKFIEQAKEEILKD-C-DKL-DKCYNVGIQDFK------ 143 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l----~~~~~~-~--v~~vD~s~~~~~~a~~~~~~~-~-~~i-~~~~~~d~~~~~------ 143 (256)
.++.+|||||||+|.++..+ +..+.. . ++++|+|+.|++.++++.... + .++ ..+...++.++.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 56679999999999766533 333322 3 399999999999999988643 1 222 033455555443
Q ss_pred CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc--------cccCCCCceeeCHHHHHH
Q psy8370 144 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN--------EYDDEDSSVVRSLPQFCL 215 (256)
Q Consensus 144 ~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 215 (256)
..++ +||+|++..+++|++ +..+++++++++|||||.+++.......... ..........++.+++.+
T Consensus 131 ~~~~--~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (292)
T 2aot_A 131 KELQ--KWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQ 206 (292)
T ss_dssp TCCC--CEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHH
T ss_pred cCCC--ceeEEEEeeeeeecC--CHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHH
Confidence 1233 899999999999995 4568999999999999999997543221100 011111234568999999
Q ss_pred HHHhcCCcEEEee
Q psy8370 216 LFSKANLKCVKSE 228 (256)
Q Consensus 216 ~l~~~gf~~~~~~ 228 (256)
+++++||+++...
T Consensus 207 ~l~~aGf~~~~~~ 219 (292)
T 2aot_A 207 MLDNLGLKYECYD 219 (292)
T ss_dssp HHHHHTCCEEEEE
T ss_pred HHHHCCCceEEEE
Confidence 9999999987643
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.4e-17 Score=134.62 Aligned_cols=149 Identities=17% Similarity=0.196 Sum_probs=117.0
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCce
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
......++.+|||||||+|.++..+++.... +++++|+ +.+++.+++++...+ .++ .+..+|+.+.+.. .+
T Consensus 184 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~----~~ 257 (359)
T 1x19_A 184 EEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRM-RGIAVDIYKESYP----EA 257 (359)
T ss_dssp HHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTE-EEEECCTTTSCCC----CC
T ss_pred HhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCE-EEEeCccccCCCC----CC
Confidence 3345677889999999999999999887533 8999999 999999999987654 347 8999999876432 24
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc-----------cc-CCCCceeeCHHHHHHHHHh
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-----------YD-DEDSSVVRSLPQFCLLFSK 219 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~l~~ 219 (256)
|+|++..++|+++++...+++++++++|+|||.+++.+......... .. .......++.+++.+++++
T Consensus 258 D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~ 337 (359)
T 1x19_A 258 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILES 337 (359)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHH
T ss_pred CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHH
Confidence 99999999999988778899999999999999999987554332110 00 1111122789999999999
Q ss_pred cCCcEEEeee
Q psy8370 220 ANLKCVKSEK 229 (256)
Q Consensus 220 ~gf~~~~~~~ 229 (256)
+||++++...
T Consensus 338 aGf~~v~~~~ 347 (359)
T 1x19_A 338 LGYKDVTMVR 347 (359)
T ss_dssp HTCEEEEEEE
T ss_pred CCCceEEEEe
Confidence 9999988764
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-18 Score=129.40 Aligned_cols=125 Identities=15% Similarity=0.147 Sum_probs=103.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.++++....+. ++ .+..+|+.+.. .. +||+|+++.
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~--~~--~fD~i~~~~ 133 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDI-ALQKTSLLADV--DG--KFDLIVANI 133 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCC-EEEESSTTTTC--CS--CEEEEEEES
T ss_pred cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCce-EEEeccccccC--CC--CceEEEECC
Confidence 56789999999999999998877666999999999999999999887653 36 89999987754 23 799999987
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
.++++ ..+++++.++|+|||.+++.+... .+.+++.++++++||+++....
T Consensus 134 ~~~~~-----~~~l~~~~~~L~~gG~l~~~~~~~---------------~~~~~~~~~~~~~Gf~~~~~~~ 184 (205)
T 3grz_A 134 LAEIL-----LDLIPQLDSHLNEDGQVIFSGIDY---------------LQLPKIEQALAENSFQIDLKMR 184 (205)
T ss_dssp CHHHH-----HHHGGGSGGGEEEEEEEEEEEEEG---------------GGHHHHHHHHHHTTEEEEEEEE
T ss_pred cHHHH-----HHHHHHHHHhcCCCCEEEEEecCc---------------ccHHHHHHHHHHcCCceEEeec
Confidence 77654 578999999999999999964222 1467889999999999987664
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=125.24 Aligned_cols=141 Identities=8% Similarity=0.041 Sum_probs=95.7
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++....+ .++ .++..+..++..... ++||+|+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~~~~~l~~~~~-~~fD~v~~~ 96 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGLSK-KVYAFDVQEQALGKTSQRLSDLGIENT-ELILDGHENLDHYVR-EPIRAAIFN 96 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHHTCCCE-EEEESCGGGGGGTCC-SCEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCcE-EEEeCcHHHHHhhcc-CCcCEEEEe
Confidence 46789999999999999999988744 99999999999999999988665 466 888888777542222 379999887
Q ss_pred h-hhhc----c--CHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 158 W-VLMF----I--LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 158 ~-~l~~----~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
. .+++ + ..+....+++++.++|||||.+++.......... .......++...+...+|.+.....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (185)
T 3mti_A 97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGD-------MEKDAVLEYVIGLDQRVFTAMLYQP 168 (185)
T ss_dssp EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------C-------HHHHHHHHHHHHSCTTTEEEEEEEE
T ss_pred CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCH-------HHHHHHHHHHHhCCCceEEEEEehh
Confidence 3 2222 0 2245667899999999999999987432211100 0001123333444456788776554
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-18 Score=130.35 Aligned_cols=106 Identities=17% Similarity=0.222 Sum_probs=90.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.++.+|||+|||+|.++..++..+..+++++|+|+.+++.++++.... .++ .+..+|+.+++.... +||+|++..+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~i-~~~~~d~~~~~~~~~--~fD~v~~~~~ 116 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV-PQL-RWETMDVRKLDFPSA--SFDVVLEKGT 116 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC-TTC-EEEECCTTSCCSCSS--CEEEEEEESH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccC-CCc-EEEEcchhcCCCCCC--cccEEEECcc
Confidence 667899999999999999998887668999999999999999987642 356 889999988765544 8999999988
Q ss_pred hhccC-------------HHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 160 LMFIL-------------DEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 160 l~~~~-------------~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
++++. ..+...+++++.++|+|||.+++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 117 LDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp HHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 87765 3567889999999999999999974
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=133.09 Aligned_cols=148 Identities=12% Similarity=0.118 Sum_probs=111.0
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhc-C-CeEEEEeCCHH------HHHHHHHHHHhcC--CCcceEEEcc-c--cccCC
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKH-F-DKIDLLEQSSK------FIEQAKEEILKDC--DKLDKCYNVG-I--QDFKP 144 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~------~~~~a~~~~~~~~--~~i~~~~~~d-~--~~~~~ 144 (256)
...++.+|||||||+|.++..++... . .+|+|+|+|+. +++.+++++...+ .++ .+...| + ..++.
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~~~ 118 (275)
T 3bkx_A 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRL-TVHFNTNLSDDLGPI 118 (275)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGE-EEECSCCTTTCCGGG
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCce-EEEECChhhhccCCC
Confidence 56788999999999999999998874 3 49999999997 9999999987654 356 888887 3 33333
Q ss_pred CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc------------------cc-CCCCc
Q psy8370 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE------------------YD-DEDSS 205 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~------------------~~-~~~~~ 205 (256)
..+ +||+|++..+++|+++.. .+++.+.++++|||.+++.+......... .. .....
T Consensus 119 ~~~--~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (275)
T 3bkx_A 119 ADQ--HFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIR 194 (275)
T ss_dssp TTC--CCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSCC
T ss_pred CCC--CEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcccccccccc
Confidence 334 899999999999996543 57777777778899999987554332110 00 11122
Q ss_pred eeeCHHHHHHHHHhcCCcEEEeeee
Q psy8370 206 VVRSLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 206 ~~~~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
...+.+++.++++++||+++.....
T Consensus 195 ~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 195 TLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp CCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred ccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 3478999999999999999887644
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=129.04 Aligned_cols=144 Identities=19% Similarity=0.205 Sum_probs=109.1
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++++. . .+...|+.+.......++||+|++..+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~------~-~~~~~d~~~~~~~~~~~~fD~v~~~~~ 102 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL------D-HVVLGDIETMDMPYEEEQFDCVIFGDV 102 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS------S-EEEESCTTTCCCCSCTTCEEEEEEESC
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC------C-cEEEcchhhcCCCCCCCccCEEEECCh
Confidence 577899999999999999998875 59999999999999887653 2 678888876422211238999999999
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCC----------c----cccCCCCceeeCHHHHHHHHHhcCCcEE
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK----------N----EYDDEDSSVVRSLPQFCLLFSKANLKCV 225 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~----------~----~~~~~~~~~~~~~~~~~~~l~~~gf~~~ 225 (256)
++|+++ ...+++++.++|+|||.+++..+...... . ......+...++.+++.++++++||+++
T Consensus 103 l~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 180 (230)
T 3cc8_A 103 LEHLFD--PWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSIS 180 (230)
T ss_dssp GGGSSC--HHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEE
T ss_pred hhhcCC--HHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEE
Confidence 999954 35899999999999999999865432110 0 0001122344799999999999999998
Q ss_pred EeeeecCC
Q psy8370 226 KSEKVTGM 233 (256)
Q Consensus 226 ~~~~~~~~ 233 (256)
........
T Consensus 181 ~~~~~~~~ 188 (230)
T 3cc8_A 181 KVDRVYVD 188 (230)
T ss_dssp EEEEEECC
T ss_pred EEEecccC
Confidence 87754433
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-17 Score=135.20 Aligned_cols=149 Identities=14% Similarity=0.124 Sum_probs=116.5
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCcee
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
.........+|+|||||+|.++..++++.+. +++..|. |.+++.+++...... .++ ++..+|+.+.+.+ .+|
T Consensus 173 ~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv-~~~~gD~~~~~~~----~~D 246 (353)
T 4a6d_A 173 TAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQI-DFQEGDFFKDPLP----EAD 246 (353)
T ss_dssp HSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSE-EEEESCTTTSCCC----CCS
T ss_pred HhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCce-eeecCccccCCCC----Cce
Confidence 3445667789999999999999999888765 7788887 888999988765433 578 9999998764322 479
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc-c---------cCCCCceeeCHHHHHHHHHhcCC
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-Y---------DDEDSSVVRSLPQFCLLFSKANL 222 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~l~~~gf 222 (256)
+|++..++|++++++..++|+++++.|+|||.+++.+...+..... . -.......+|.++|.++++++||
T Consensus 247 ~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf 326 (353)
T 4a6d_A 247 LYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGF 326 (353)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTC
T ss_pred EEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCC
Confidence 9999999999999888999999999999999999998765433210 0 00112334799999999999999
Q ss_pred cEEEeee
Q psy8370 223 KCVKSEK 229 (256)
Q Consensus 223 ~~~~~~~ 229 (256)
+.+++..
T Consensus 327 ~~v~v~~ 333 (353)
T 4a6d_A 327 RDFQFKK 333 (353)
T ss_dssp EEEEEEC
T ss_pred ceEEEEE
Confidence 9988764
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.9e-17 Score=141.16 Aligned_cols=162 Identities=15% Similarity=0.124 Sum_probs=118.8
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhc------C-CCcceEEEccccccCCCCCCC
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKD------C-DKLDKCYNVGIQDFKPEDLNI 149 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~------~-~~i~~~~~~d~~~~~~~~~~~ 149 (256)
..++.+|||||||+|.++..++..+. .+|+|+|+|+.|++.|++++... + .++ .++++|+.+++....
T Consensus 719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nV-efiqGDa~dLp~~d~-- 795 (950)
T 3htx_A 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSA-TLYDGSILEFDSRLH-- 795 (950)
T ss_dssp HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEE-EEEESCTTSCCTTSC--
T ss_pred ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCce-EEEECchHhCCcccC--
Confidence 34788999999999999999987773 49999999999999999877532 2 356 899999999887655
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCC-------------------CccccCCCCceeeCH
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV-------------------KNEYDDEDSSVVRSL 210 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-------------------~~~~~~~~~~~~~~~ 210 (256)
+||+|++..+++|++++....+++++.++|+|| .++++....... ...+....+.+.++.
T Consensus 796 sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~fRh~DHrFEWTR 874 (950)
T 3htx_A 796 DVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPKFRNHDHKFEWTR 874 (950)
T ss_dssp SCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSSCSCSSCSCCBCH
T ss_pred CeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccccccccccccccccccccCcceeecH
Confidence 899999999999999877778999999999999 777765433110 011222334455678
Q ss_pred HHHHH----HHHhcCCcEEEeeeecC-CCCcceeeeEEE
Q psy8370 211 PQFCL----LFSKANLKCVKSEKVTG-MPKSLFKIYMFA 244 (256)
Q Consensus 211 ~~~~~----~l~~~gf~~~~~~~~~~-~~~~~~~~~~~~ 244 (256)
+++.. +..+.||.+.....-.. .|...++..+..
T Consensus 875 eEFr~Wae~LAer~GYsVefvGVGDg~ep~vG~~TQiAV 913 (950)
T 3htx_A 875 EQFNQWASKLGKRHNYSVEFSGVGGSGEVEPGFASQIAI 913 (950)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEESSCSSSTTCCSEEEEE
T ss_pred HHHHHHHHHHHHhcCcEEEEEccCCCCCCCCCCccEEEE
Confidence 88777 67778998765543322 233444443333
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-17 Score=136.30 Aligned_cols=147 Identities=20% Similarity=0.241 Sum_probs=113.5
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
...++.+|||||||+|.++..++..... +++++|+ +.+++.+++++...+ .++ .+..+|+.+.. .. .||+|
T Consensus 179 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~--~~--~~D~v 252 (374)
T 1qzz_A 179 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRV-TVAEGDFFKPL--PV--TADVV 252 (374)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTE-EEEECCTTSCC--SC--CEEEE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCce-EEEeCCCCCcC--CC--CCCEE
Confidence 4567889999999999999999887643 8999999 999999999987654 357 89999987622 22 49999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec--ccCCCCc-ccc--------CCCCceeeCHHHHHHHHHhcCCc
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN--VASGVKN-EYD--------DEDSSVVRSLPQFCLLFSKANLK 223 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~--~~~~~~~-~~~--------~~~~~~~~~~~~~~~~l~~~gf~ 223 (256)
++..++|+++++....++++++++|+|||.+++.+. ..+.... ... ...+...++.+++.++++++||+
T Consensus 253 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 332 (374)
T 1qzz_A 253 LLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLA 332 (374)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEE
T ss_pred EEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCc
Confidence 999999999887778999999999999999999876 4322110 000 00012336899999999999999
Q ss_pred EEEeeee
Q psy8370 224 CVKSEKV 230 (256)
Q Consensus 224 ~~~~~~~ 230 (256)
+++....
T Consensus 333 ~~~~~~~ 339 (374)
T 1qzz_A 333 LASERTS 339 (374)
T ss_dssp EEEEEEE
T ss_pred eEEEEEC
Confidence 9887654
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-17 Score=135.52 Aligned_cols=145 Identities=12% Similarity=0.211 Sum_probs=114.1
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
...+ .+|||+|||+|..+..++..... +++++|+ +.+++.+++++...+ .++ .+..+|+.+. .+ . +||+|
T Consensus 165 ~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~-~~-~--~~D~v 237 (334)
T 2ip2_A 165 DFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERV-SLVGGDMLQE-VP-S--NGDIY 237 (334)
T ss_dssp CCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSE-EEEESCTTTC-CC-S--SCSEE
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcE-EEecCCCCCC-CC-C--CCCEE
Confidence 4455 89999999999999999877533 8999999 999999999876543 467 8999999773 22 3 69999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccc-----c----CCCCceeeCHHHHHHHHHhcCCcEE
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY-----D----DEDSSVVRSLPQFCLLFSKANLKCV 225 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~l~~~gf~~~ 225 (256)
++..++|+++++....+++++++.|+|||.+++.+...+...... . .......++.++|.++++++||+++
T Consensus 238 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 317 (334)
T 2ip2_A 238 LLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVE 317 (334)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEE
T ss_pred EEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCcee
Confidence 999999999888888999999999999999999876554321100 0 0001234689999999999999998
Q ss_pred Eeee
Q psy8370 226 KSEK 229 (256)
Q Consensus 226 ~~~~ 229 (256)
+...
T Consensus 318 ~~~~ 321 (334)
T 2ip2_A 318 RIVD 321 (334)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-17 Score=134.77 Aligned_cols=148 Identities=20% Similarity=0.231 Sum_probs=115.8
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
...++.+|||||||+|.++..++..+.. +++++|+ +.+++.+++++...+ .++ .+..+|+.+.. .. .||+|
T Consensus 180 ~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~--~~--~~D~v 253 (360)
T 1tw3_A 180 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRV-DVVEGDFFEPL--PR--KADAI 253 (360)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTE-EEEECCTTSCC--SS--CEEEE
T ss_pred CCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCce-EEEeCCCCCCC--CC--CccEE
Confidence 4567789999999999999999887643 8999999 999999999987654 367 89999987632 22 49999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecc-cCCCCc-ccc--------CCCCceeeCHHHHHHHHHhcCCcE
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV-ASGVKN-EYD--------DEDSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~-~~~~~~-~~~--------~~~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
++..++|++++++...++++++++|+|||.+++.+.. .+.... ... ...+...++.+++.++++++||++
T Consensus 254 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 333 (360)
T 1tw3_A 254 ILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVV 333 (360)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEE
T ss_pred EEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeE
Confidence 9999999998877789999999999999999998766 322110 000 000123468999999999999999
Q ss_pred EEeeeec
Q psy8370 225 VKSEKVT 231 (256)
Q Consensus 225 ~~~~~~~ 231 (256)
++.....
T Consensus 334 ~~~~~~~ 340 (360)
T 1tw3_A 334 EEVRQLP 340 (360)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 8876543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.9e-17 Score=122.31 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=102.0
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeE
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
.....++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.++++....+ .++ .+..+|+.+...... .||+
T Consensus 35 ~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~--~~D~ 111 (204)
T 3e05_A 35 KLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNV-TLVEAFAPEGLDDLP--DPDR 111 (204)
T ss_dssp HTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTE-EEEECCTTTTCTTSC--CCSE
T ss_pred HcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcE-EEEeCChhhhhhcCC--CCCE
Confidence 33567889999999999999999988863 399999999999999999987665 356 889999876655444 7999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcE
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
|++...++ ....+++++.+.|+|||.+++..... .+.+++.+.++++||.+
T Consensus 112 i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~l~~~g~~~ 162 (204)
T 3e05_A 112 VFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTL---------------DTLTKAVEFLEDHGYMV 162 (204)
T ss_dssp EEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBH---------------HHHHHHHHHHHHTTCEE
T ss_pred EEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEeccc---------------ccHHHHHHHHHHCCCce
Confidence 99987765 23579999999999999999963221 24577889999999843
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=133.51 Aligned_cols=105 Identities=23% Similarity=0.204 Sum_probs=90.1
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhc---CCCcceEEEccccccCCCC----CCCc
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKD---CDKLDKCYNVGIQDFKPED----LNIK 150 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~~i~~~~~~d~~~~~~~~----~~~~ 150 (256)
.++.+|||||||+|..+..++.. ...+|+|+|+|+.+++.++++.... ..++ .++++|+.+++... ..++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~~~ 113 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNV-SFKISSSDDFKFLGADSVDKQK 113 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTE-EEEECCTTCCGGGCTTTTTSSC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCce-EEEEcCHHhCCccccccccCCC
Confidence 57899999999999999999863 3459999999999999999998875 3577 99999999877554 0138
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
||+|++..+++|+ +...+++++.++|+|||.+++.
T Consensus 114 fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 114 IDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp EEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEE
Confidence 9999999999999 4568999999999999999984
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=129.46 Aligned_cols=127 Identities=12% Similarity=0.098 Sum_probs=103.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.++.+|||+|||+|.++..++..+. +|+|+|+++.+++.++++....+..+ .+..+|+.+..+ .. +||+|+++..
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v-~~~~~d~~~~~~-~~--~fD~Vv~n~~ 193 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRP-RFLEGSLEAALP-FG--PFDLLVANLY 193 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCC-EEEESCHHHHGG-GC--CEEEEEEECC
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCcE-EEEECChhhcCc-CC--CCCEEEECCc
Confidence 5678999999999999999988887 99999999999999999988765446 888888876422 33 7999999765
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeec
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVT 231 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~ 231 (256)
.++ +..+++.+.+.|+|||.++++.... .+.+++.+.++++||+++......
T Consensus 194 ~~~-----~~~~l~~~~~~LkpgG~lils~~~~---------------~~~~~v~~~l~~~Gf~~~~~~~~~ 245 (254)
T 2nxc_A 194 AEL-----HAALAPRYREALVPGGRALLTGILK---------------DRAPLVREAMAGAGFRPLEEAAEG 245 (254)
T ss_dssp HHH-----HHHHHHHHHHHEEEEEEEEEEEEEG---------------GGHHHHHHHHHHTTCEEEEEEEET
T ss_pred HHH-----HHHHHHHHHHHcCCCCEEEEEeecc---------------CCHHHHHHHHHHCCCEEEEEeccC
Confidence 443 4579999999999999999964222 246789999999999998776543
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-17 Score=126.14 Aligned_cols=153 Identities=9% Similarity=0.008 Sum_probs=107.1
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHh-cCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC-CCCCCcee
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP-EDLNIKYD 152 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~-~~~~~~~D 152 (256)
...+.++.+|||+|||+|.++..++.. |.. +|+++|+++.|++.++++....+ ++ ..+..|...... ....+.+|
T Consensus 72 ~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~-ni-~~V~~d~~~p~~~~~~~~~vD 149 (233)
T 4df3_A 72 ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR-NI-FPILGDARFPEKYRHLVEGVD 149 (233)
T ss_dssp CCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT-TE-EEEESCTTCGGGGTTTCCCEE
T ss_pred hcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc-Ce-eEEEEeccCccccccccceEE
Confidence 456899999999999999999999876 333 89999999999999988876543 56 777777765432 11124899
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecC
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTG 232 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~ 232 (256)
+|++... +. ++...+++++++.|||||.++++.......... ... ...++..+.|+++||++++......
T Consensus 150 vVf~d~~--~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~--p~~----~~~~~ev~~L~~~GF~l~e~i~L~p 219 (233)
T 4df3_A 150 GLYADVA--QP--EQAAIVVRNARFFLRDGGYMLMAIKARSIDVTT--EPS----EVYKREIKTLMDGGLEIKDVVHLDP 219 (233)
T ss_dssp EEEECCC--CT--THHHHHHHHHHHHEEEEEEEEEEEECCHHHHHT--CCC----HHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred EEEEecc--CC--hhHHHHHHHHHHhccCCCEEEEEEecccCCCCC--ChH----HHHHHHHHHHHHCCCEEEEEEccCC
Confidence 9987533 22 345679999999999999999874322221110 000 0123445678899999988776666
Q ss_pred CCCcceee
Q psy8370 233 MPKSLFKI 240 (256)
Q Consensus 233 ~~~~~~~~ 240 (256)
++.+++-+
T Consensus 220 f~~~H~lv 227 (233)
T 4df3_A 220 FDRDHAMI 227 (233)
T ss_dssp TSTTEEEE
T ss_pred CCCceEEE
Confidence 66655443
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=121.47 Aligned_cols=127 Identities=11% Similarity=0.027 Sum_probs=101.9
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++....+. ++ .++.+|+.+...... .||+|+
T Consensus 52 ~~~~~~~vLDlGcG~G~~~~~la~~~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v-~~~~~d~~~~~~~~~--~~D~v~ 127 (204)
T 3njr_A 52 APRRGELLWDIGGGSGSVSVEWCLAGG-RAITIEPRADRIENIQKNIDTYGLSPRM-RAVQGTAPAALADLP--LPEAVF 127 (204)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTTE-EEEESCTTGGGTTSC--CCSEEE
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCE-EEEeCchhhhcccCC--CCCEEE
Confidence 467789999999999999999988844 999999999999999999887652 57 899999988544444 799999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeee
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
+...+ ... +++++.+.|+|||.+++..... .+..++.+.+++.|+++......
T Consensus 128 ~~~~~------~~~-~l~~~~~~LkpgG~lv~~~~~~---------------~~~~~~~~~l~~~g~~i~~i~~~ 180 (204)
T 3njr_A 128 IGGGG------SQA-LYDRLWEWLAPGTRIVANAVTL---------------ESETLLTQLHARHGGQLLRIDIA 180 (204)
T ss_dssp ECSCC------CHH-HHHHHHHHSCTTCEEEEEECSH---------------HHHHHHHHHHHHHCSEEEEEEEE
T ss_pred ECCcc------cHH-HHHHHHHhcCCCcEEEEEecCc---------------ccHHHHHHHHHhCCCcEEEEEee
Confidence 87643 234 9999999999999999863211 23567788899999988876543
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.5e-17 Score=125.02 Aligned_cols=135 Identities=16% Similarity=0.042 Sum_probs=102.9
Q ss_pred CCCCCeEEEEcCC-CCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 79 DPGKTRVLDVGAG-IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 79 ~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..++.+|||+||| +|.++..++.....+|+|+|+|+.+++.++++....+.++ .++.+|+........ ++||+|+++
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v-~~~~~d~~~~~~~~~-~~fD~I~~n 130 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNV-RLVKSNGGIIKGVVE-GTFDVIFSA 130 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCC-EEEECSSCSSTTTCC-SCEEEEEEC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEeCCchhhhhccc-CceeEEEEC
Confidence 4678999999999 9999999988744499999999999999999998776667 899999754433222 489999998
Q ss_pred hhhhccCH-----------------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhc
Q psy8370 158 WVLMFILD-----------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA 220 (256)
Q Consensus 158 ~~l~~~~~-----------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (256)
-.+++.+. +....+++++.++|+|||.+++...... ...+++.+.++++
T Consensus 131 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------~~~~~~~~~l~~~ 196 (230)
T 3evz_A 131 PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE--------------KLLNVIKERGIKL 196 (230)
T ss_dssp CCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH--------------HHHHHHHHHHHHT
T ss_pred CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH--------------hHHHHHHHHHHHc
Confidence 55443321 2246899999999999999998521110 2346788999999
Q ss_pred CCcEEEeee
Q psy8370 221 NLKCVKSEK 229 (256)
Q Consensus 221 gf~~~~~~~ 229 (256)
||.+.....
T Consensus 197 g~~~~~~~~ 205 (230)
T 3evz_A 197 GYSVKDIKF 205 (230)
T ss_dssp TCEEEEEEE
T ss_pred CCceEEEEe
Confidence 998877654
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8.1e-17 Score=133.31 Aligned_cols=140 Identities=20% Similarity=0.289 Sum_probs=110.6
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..+..+|||||||+|.++..+++.... +++++|+ +.+++.+++. .++ .+..+|+.+ +.+ . . |+|++.
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v-~~~~~d~~~-~~p-~--~-D~v~~~ 268 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-----SGV-EHLGGDMFD-GVP-K--G-DAIFIK 268 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTE-EEEECCTTT-CCC-C--C-SEEEEE
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-----CCC-EEEecCCCC-CCC-C--C-CEEEEe
Confidence 566789999999999999999887644 8999999 8888776542 367 899999986 222 3 3 999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc--------------ccCCCCceeeCHHHHHHHHHhcCCc
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE--------------YDDEDSSVVRSLPQFCLLFSKANLK 223 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~gf~ 223 (256)
.++|++++++..++++++++.|+|||.+++.+...+..... .........++.++|.++++++||+
T Consensus 269 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~ 348 (368)
T 3reo_A 269 WICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFR 348 (368)
T ss_dssp SCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCC
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCe
Confidence 99999998888899999999999999999988765443210 0001233457899999999999999
Q ss_pred EEEeeee
Q psy8370 224 CVKSEKV 230 (256)
Q Consensus 224 ~~~~~~~ 230 (256)
.++....
T Consensus 349 ~v~~~~~ 355 (368)
T 3reo_A 349 GFKVASC 355 (368)
T ss_dssp EEEEEEE
T ss_pred eeEEEEe
Confidence 9887644
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=135.83 Aligned_cols=146 Identities=20% Similarity=0.277 Sum_probs=109.1
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHH--hcCCCcceEEEccccccCCCCCCCce
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEIL--KDCDKLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~--~~~~~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
......+..+|||||||+|..+..+++.... +++++|+ +.++. +++.. ....++ .+..+|+.+..+ +|
T Consensus 178 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v-~~~~~d~~~~~p-----~~ 248 (348)
T 3lst_A 178 RAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRW-KVVEGDFLREVP-----HA 248 (348)
T ss_dssp HHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSE-EEEECCTTTCCC-----CC
T ss_pred HhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCe-EEEecCCCCCCC-----CC
Confidence 3345677889999999999999999887654 7899999 44444 22222 122457 899999863222 59
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccc---------cCCCCceeeCHHHHHHHHHhcCC
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY---------DDEDSSVVRSLPQFCLLFSKANL 222 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~gf 222 (256)
|+|++..++|++++++..+++++++++|||||.+++.+.......... ........++.+++.++++++||
T Consensus 249 D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 328 (348)
T 3lst_A 249 DVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGL 328 (348)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTE
T ss_pred cEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCC
Confidence 999999999999988878999999999999999999886554432100 00122334689999999999999
Q ss_pred cEEEeee
Q psy8370 223 KCVKSEK 229 (256)
Q Consensus 223 ~~~~~~~ 229 (256)
++++...
T Consensus 329 ~~~~~~~ 335 (348)
T 3lst_A 329 RLDRVVG 335 (348)
T ss_dssp EEEEEEE
T ss_pred ceEEEEE
Confidence 9988764
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=9.5e-17 Score=130.18 Aligned_cols=149 Identities=15% Similarity=0.093 Sum_probs=110.7
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--------CCcceEEEccccccC----CCCC
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--------DKLDKCYNVGIQDFK----PEDL 147 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--------~~i~~~~~~d~~~~~----~~~~ 147 (256)
.++.+|||+|||+|.++..++..+..+++++|+|+.+++.++++....+ .++ .++++|+.+.+ ....
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSA-EFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEE-EEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceE-EEEEecccccchhhhcccC
Confidence 4678999999999999999887655599999999999999999886531 256 88999998875 2211
Q ss_pred CCceeEEEechhhhcc--CHHHHHHHHHHHhhhcCCCcEEEEEecccCC---------------C-----Cc---cccC-
Q psy8370 148 NIKYDVIWIQWVLMFI--LDEDIIKFLNLCKQILNKNGIIIIKDNVASG---------------V-----KN---EYDD- 201 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~---------------~-----~~---~~~~- 201 (256)
.++||+|++..++|++ +.++...++++++++|+|||.+++....... . .. ....
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 191 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLF 191 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSS
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCc
Confidence 2389999999999987 4466789999999999999999998542210 0 00 0000
Q ss_pred ------------CCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 202 ------------EDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 202 ------------~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
....+..+.+++.+++++.||+++....
T Consensus 192 ~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~ 231 (313)
T 3bgv_A 192 GCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKT 231 (313)
T ss_dssp CCEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEE
T ss_pred cceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecC
Confidence 0011235778999999999999997654
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-17 Score=129.59 Aligned_cols=154 Identities=11% Similarity=0.192 Sum_probs=111.0
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCC---CHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGI---GRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 142 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~---G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~ 142 (256)
.++.+.+..........+|||||||+ |.++..+..... .+|+++|+|+.|++.+++++... .++ .++.+|+.+.
T Consensus 63 ~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~-~~v-~~~~~D~~~~ 140 (274)
T 2qe6_A 63 KVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD-PNT-AVFTADVRDP 140 (274)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC-TTE-EEEECCTTCH
T ss_pred HHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC-CCe-EEEEeeCCCc
Confidence 45555441111133457999999999 988776655432 39999999999999999988542 366 8999999764
Q ss_pred C-----------CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc------cccC-CCC
Q psy8370 143 K-----------PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------EYDD-EDS 204 (256)
Q Consensus 143 ~-----------~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------~~~~-~~~ 204 (256)
. .... +||+|++..++||+++++...++++++++|+|||.|++.+........ .+.. ...
T Consensus 141 ~~~~~~~~~~~~~d~~--~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 218 (274)
T 2qe6_A 141 EYILNHPDVRRMIDFS--RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQKLARITRENLGE 218 (274)
T ss_dssp HHHHHSHHHHHHCCTT--SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHHHHHHHHHHHSC
T ss_pred hhhhccchhhccCCCC--CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHHHHHHHHhcCCC
Confidence 2 1123 799999999999998766789999999999999999998765532000 0000 012
Q ss_pred ceeeCHHHHHHHHHhcCCcEEE
Q psy8370 205 SVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 205 ~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
...++.+++.+++ .||++++
T Consensus 219 ~~~~s~~ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 219 GWARTPEEIERQF--GDFELVE 238 (274)
T ss_dssp CCCBCHHHHHHTT--TTCEECT
T ss_pred CccCCHHHHHHHh--CCCeEcc
Confidence 2347999999999 5998875
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-16 Score=124.94 Aligned_cols=141 Identities=14% Similarity=0.135 Sum_probs=107.5
Q ss_pred CCC-CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEE
Q psy8370 78 SDP-GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 78 ~~~-~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
... ++.+|||+|||+|.++..++.++..+|+|+|+++.+++.|++++...+ .++ .++.+|+.+.......++||+|
T Consensus 45 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v-~~~~~D~~~~~~~~~~~~fD~I 123 (259)
T 3lpm_A 45 YLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQI-EIIEYDLKKITDLIPKERADIV 123 (259)
T ss_dssp CCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTE-EEECSCGGGGGGTSCTTCEEEE
T ss_pred cCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccE-EEEECcHHHhhhhhccCCccEE
Confidence 455 789999999999999999988876699999999999999999998665 357 8999999887642212489999
Q ss_pred Eechhhhc------------------cCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHH
Q psy8370 155 WIQWVLMF------------------ILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLL 216 (256)
Q Consensus 155 ~~~~~l~~------------------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (256)
+++-.+.. .....+..+++.+.++|+|||.+++.... ....++...
T Consensus 124 i~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----------------~~~~~~~~~ 187 (259)
T 3lpm_A 124 TCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP----------------ERLLDIIDI 187 (259)
T ss_dssp EECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT----------------TTHHHHHHH
T ss_pred EECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH----------------HHHHHHHHH
Confidence 99633211 11134567999999999999999995211 235678889
Q ss_pred HHhcCCcEEEeeeecCCCC
Q psy8370 217 FSKANLKCVKSEKVTGMPK 235 (256)
Q Consensus 217 l~~~gf~~~~~~~~~~~~~ 235 (256)
+.+.||.+.........+.
T Consensus 188 l~~~~~~~~~~~~v~~~~~ 206 (259)
T 3lpm_A 188 MRKYRLEPKRIQFVHPRSD 206 (259)
T ss_dssp HHHTTEEEEEEEEEESSTT
T ss_pred HHHCCCceEEEEEeecCCC
Confidence 9999999887765544443
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=129.62 Aligned_cols=117 Identities=11% Similarity=0.156 Sum_probs=93.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccc-ccCCC-CCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ-DFKPE-DLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~-~~~~~-~~~~~~D~V~~~ 157 (256)
.++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++ ..++ .++++|+. .++.. .+ +||+|++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----~~~~-~~~~~d~~~~~~~~~~~--~fD~v~~~ 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARAN----APHA-DVYEWNGKGELPAGLGA--PFGLIVSR 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHH----CTTS-EEEECCSCSSCCTTCCC--CEEEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHh----CCCc-eEEEcchhhccCCcCCC--CEEEEEeC
Confidence 5678999999999999999988866 999999999999999988 2356 89999995 44433 34 89999997
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
. +...++++++++|||||.++... -..+.+++.+.+.++||......
T Consensus 119 ~--------~~~~~l~~~~~~LkpgG~l~~~~----------------~~~~~~~~~~~l~~~Gf~~~~~~ 165 (226)
T 3m33_A 119 R--------GPTSVILRLPELAAPDAHFLYVG----------------PRLNVPEVPERLAAVGWDIVAED 165 (226)
T ss_dssp S--------CCSGGGGGHHHHEEEEEEEEEEE----------------SSSCCTHHHHHHHHTTCEEEEEE
T ss_pred C--------CHHHHHHHHHHHcCCCcEEEEeC----------------CcCCHHHHHHHHHHCCCeEEEEE
Confidence 1 23468889999999999999211 01245678899999999987655
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=132.36 Aligned_cols=140 Identities=19% Similarity=0.213 Sum_probs=111.1
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++. .++ .+..+|+.+ +.+ . . |+|++.
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v-~~~~~D~~~-~~p-~--~-D~v~~~ 266 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-----PGV-THVGGDMFK-EVP-S--G-DTILMK 266 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTE-EEEECCTTT-CCC-C--C-SEEEEE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-----CCe-EEEeCCcCC-CCC-C--C-CEEEeh
Confidence 567789999999999999999887644 8999999 8888776542 467 999999987 322 3 3 999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc--------------ccCCCCceeeCHHHHHHHHHhcCCc
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE--------------YDDEDSSVVRSLPQFCLLFSKANLK 223 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~gf~ 223 (256)
.++|++++++..++|+++++.|+|||.+++.+...+..... .........++.++|.++++++||+
T Consensus 267 ~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~ 346 (364)
T 3p9c_A 267 WILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFT 346 (364)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCC
T ss_pred HHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCc
Confidence 99999998888899999999999999999988765443110 0011233457899999999999999
Q ss_pred EEEeeee
Q psy8370 224 CVKSEKV 230 (256)
Q Consensus 224 ~~~~~~~ 230 (256)
.++....
T Consensus 347 ~v~~~~~ 353 (364)
T 3p9c_A 347 GVKSTYI 353 (364)
T ss_dssp EEEEEEE
T ss_pred eEEEEEc
Confidence 9887644
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=118.21 Aligned_cols=132 Identities=11% Similarity=0.023 Sum_probs=100.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.++.+|||+|||+|.++..++..+ +|+|+|+|+.|++. ..++ .+..+|+.+... .. +||+|+++..
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~--------~~~~-~~~~~d~~~~~~-~~--~fD~i~~n~~ 87 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES--------HRGG-NLVRADLLCSIN-QE--SVDVVVFNPP 87 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT--------CSSS-CEEECSTTTTBC-GG--GCSEEEECCC
T ss_pred CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc--------ccCC-eEEECChhhhcc-cC--CCCEEEECCC
Confidence 456799999999999999998777 99999999999987 2356 899999987332 24 8999999877
Q ss_pred hhccCHH-------HHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecC
Q psy8370 160 LMFILDE-------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTG 232 (256)
Q Consensus 160 l~~~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~ 232 (256)
+++.++. +...+++++.+.+ |||.+++..... ...+++.++++++||+.+.......
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~---------------~~~~~l~~~l~~~gf~~~~~~~~~~ 151 (170)
T 3q87_B 88 YVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA---------------NRPKEVLARLEERGYGTRILKVRKI 151 (170)
T ss_dssp CBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG---------------GCHHHHHHHHHHTTCEEEEEEEEEC
T ss_pred CccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC---------------CCHHHHHHHHHHCCCcEEEEEeecc
Confidence 7754322 2346788888888 999999964222 2457889999999999988776555
Q ss_pred CCCcceeee
Q psy8370 233 MPKSLFKIY 241 (256)
Q Consensus 233 ~~~~~~~~~ 241 (256)
.....|...
T Consensus 152 ~~e~~~~~~ 160 (170)
T 3q87_B 152 LGETVYIIK 160 (170)
T ss_dssp SSSEEEEEE
T ss_pred CCceEEEEE
Confidence 444444433
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-17 Score=122.58 Aligned_cols=126 Identities=11% Similarity=0.101 Sum_probs=100.8
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...++.+|||+|||+|.++..++..+ .+++++|+++.+++.+++++...+. ++ .+...|+.+..+... .||+|+
T Consensus 30 ~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~~--~~D~v~ 105 (192)
T 1l3i_A 30 EPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNV-TLMEGDAPEALCKIP--DIDIAV 105 (192)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTE-EEEESCHHHHHTTSC--CEEEEE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcce-EEEecCHHHhcccCC--CCCEEE
Confidence 56778899999999999999998877 5999999999999999999876653 56 888999877333223 799999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
+...++++ ..+++.+.++|+|||.+++..... .+..++.+.+++.||.+...
T Consensus 106 ~~~~~~~~-----~~~l~~~~~~l~~gG~l~~~~~~~---------------~~~~~~~~~l~~~g~~~~~~ 157 (192)
T 1l3i_A 106 VGGSGGEL-----QEILRIIKDKLKPGGRIIVTAILL---------------ETKFEAMECLRDLGFDVNIT 157 (192)
T ss_dssp ESCCTTCH-----HHHHHHHHHTEEEEEEEEEEECBH---------------HHHHHHHHHHHHTTCCCEEE
T ss_pred ECCchHHH-----HHHHHHHHHhcCCCcEEEEEecCc---------------chHHHHHHHHHHCCCceEEE
Confidence 98776654 579999999999999999864221 23467788999999965543
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-16 Score=122.23 Aligned_cols=143 Identities=13% Similarity=0.072 Sum_probs=101.5
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccc----cCCCCCCC
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD----FKPEDLNI 149 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~----~~~~~~~~ 149 (256)
......++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.++++.... .++ .++.+|+.+ .+.. .
T Consensus 68 ~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~v-~~~~~d~~~~~~~~~~~-~-- 142 (230)
T 1fbn_A 68 KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-ENI-IPILGDANKPQEYANIV-E-- 142 (230)
T ss_dssp CCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-TTE-EEEECCTTCGGGGTTTS-C--
T ss_pred cccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-CCe-EEEECCCCCcccccccC-c--
Confidence 3445667889999999999999999877 3349999999999999999886654 467 888999887 4433 4
Q ss_pred ceeEEEechhhhccCH-HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 150 KYDVIWIQWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
+||+|+. +++. .....+++++.+.|+|||.+++.......... ........+++. ++.++||++++..
T Consensus 143 ~~D~v~~-----~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~~~l~-~l~~~Gf~~~~~~ 211 (230)
T 1fbn_A 143 KVDVIYE-----DVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVT-----KDPKEIFKEQKE-ILEAGGFKIVDEV 211 (230)
T ss_dssp CEEEEEE-----CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSS-----SCHHHHHHHHHH-HHHHHTEEEEEEE
T ss_pred cEEEEEE-----ecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCC-----CCHHHhhHHHHH-HHHHCCCEEEEEE
Confidence 7999993 3322 34467899999999999999996211111100 001112336676 8899999988766
Q ss_pred eecCC
Q psy8370 229 KVTGM 233 (256)
Q Consensus 229 ~~~~~ 233 (256)
....+
T Consensus 212 ~~~~~ 216 (230)
T 1fbn_A 212 DIEPF 216 (230)
T ss_dssp ECTTT
T ss_pred ccCCC
Confidence 44333
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=124.25 Aligned_cols=130 Identities=15% Similarity=0.123 Sum_probs=99.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCC-CCCceeEEEe
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPED-LNIKYDVIWI 156 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~-~~~~~D~V~~ 156 (256)
.++.+|||||||+|..+..++... ..+|+++|+|+.+++.++++....+. ++ .++++|+.+++... ..++||+|++
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENT-TFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSE-EEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEeccHHHhcccccccCCccEEEE
Confidence 467899999999999999987543 23899999999999999999887653 56 89999998876421 0138999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
..+ .+...+++.+.++|+|||.+++..... ......++.+.++..||.+.....
T Consensus 148 ~~~------~~~~~~l~~~~~~LkpgG~l~~~~g~~-------------~~~~~~~~~~~l~~~g~~~~~~~~ 201 (240)
T 1xdz_A 148 RAV------ARLSVLSELCLPLVKKNGLFVALKAAS-------------AEEELNAGKKAITTLGGELENIHS 201 (240)
T ss_dssp ECC------SCHHHHHHHHGGGEEEEEEEEEEECC--------------CHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ecc------CCHHHHHHHHHHhcCCCCEEEEEeCCC-------------chHHHHHHHHHHHHcCCeEeEEEE
Confidence 763 235689999999999999999852111 011235677888999999887653
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-16 Score=120.37 Aligned_cols=142 Identities=18% Similarity=0.094 Sum_probs=96.6
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc---CCCCCCCceeE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF---KPEDLNIKYDV 153 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~---~~~~~~~~~D~ 153 (256)
...++.+|||+|||+|..+..++... ..+|+|+|+|+.|++.+.+..+.. .++ .++.+|+... .+..+ +||+
T Consensus 54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~-~~v-~~~~~d~~~~~~~~~~~~--~fD~ 129 (210)
T 1nt2_A 54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-NNI-IPLLFDASKPWKYSGIVE--KVDL 129 (210)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-SSE-EEECSCTTCGGGTTTTCC--CEEE
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC-CCe-EEEEcCCCCchhhccccc--ceeE
Confidence 45678899999999999999987764 238999999999887666655443 356 7778888764 22224 8999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHH----HHHHhcCCcEEEeee
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFC----LLFSKANLKCVKSEK 229 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~gf~~~~~~~ 229 (256)
|+++. . .+.+...++++++++|||||.+++....... ....+++++. +.++++ |++++...
T Consensus 130 V~~~~-~---~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~----------~~~~~~~~~~~~~~~~l~~~-f~~~~~~~ 194 (210)
T 1nt2_A 130 IYQDI-A---QKNQIEILKANAEFFLKEKGEVVIMVKARSI----------DSTAEPEEVFKSVLKEMEGD-FKIVKHGS 194 (210)
T ss_dssp EEECC-C---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH----------CTTSCHHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred EEEec-c---ChhHHHHHHHHHHHHhCCCCEEEEEEecCCc----------cccCCHHHHHHHHHHHHHhh-cEEeeeec
Confidence 99973 1 1134445799999999999999997322110 0112344442 237888 99988765
Q ss_pred ecCCCCcce
Q psy8370 230 VTGMPKSLF 238 (256)
Q Consensus 230 ~~~~~~~~~ 238 (256)
...+....|
T Consensus 195 ~~p~~~~h~ 203 (210)
T 1nt2_A 195 LMPYHRDHI 203 (210)
T ss_dssp CTTTCTTEE
T ss_pred CCCCCCCcE
Confidence 544444444
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=119.99 Aligned_cols=111 Identities=11% Similarity=0.050 Sum_probs=90.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.++++....+ .++ .++++|+.+.......++||+|+++.
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGA-TLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCE-EEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCce-EEEEccHHHHHhhccCCCccEEEECC
Confidence 4678999999999999998888777789999999999999999988765 367 89999998875321113899999987
Q ss_pred hhhccCHHHHHHHHHHHhh--hcCCCcEEEEEeccc
Q psy8370 159 VLMFILDEDIIKFLNLCKQ--ILNKNGIIIIKDNVA 192 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~--~LkpgG~l~i~~~~~ 192 (256)
.+++. .++...+++.+.+ +|+|||.+++.....
T Consensus 122 p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNVD-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp CTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 76653 2566789999999 999999999975433
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-17 Score=129.54 Aligned_cols=101 Identities=20% Similarity=0.338 Sum_probs=84.1
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhh
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 160 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l 160 (256)
++.+|||||||+|.++..++..+. +++|+|+|+.+++.++++.. . .+...|+.+++...+ +||+|++..++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~-----~-~~~~~d~~~~~~~~~--~fD~v~~~~~~ 124 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV-----K-NVVEAKAEDLPFPSG--AFEAVLALGDV 124 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC-----S-CEEECCTTSCCSCTT--CEEEEEECSSH
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC-----C-CEEECcHHHCCCCCC--CEEEEEEcchh
Confidence 678999999999999999988776 89999999999999998753 1 478889888775555 89999998766
Q ss_pred hccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 161 MFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
.|+..+ ...++++++++|+|||.+++....
T Consensus 125 ~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 125 LSYVEN-KDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHCSC-HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred hhcccc-HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 555322 678999999999999999987543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.2e-16 Score=117.35 Aligned_cols=109 Identities=16% Similarity=0.138 Sum_probs=86.7
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEE
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
..++.+|||+|||+|.++..++... ..+|+|+|+++.+++.+++++...+ .++ .++.+|+.++..... ++||+|
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~~~-~~fD~v 97 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRV-TLIKDGHQNMDKYID-CPVKAV 97 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGE-EEECSCGGGGGGTCC-SCEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCe-EEEECCHHHHhhhcc-CCceEE
Confidence 4677899999999999999998773 2499999999999999999988764 356 899999888753222 389999
Q ss_pred Eechhh-------hccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 155 WIQWVL-------MFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 155 ~~~~~l-------~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+++..+ ......+...+++++.++|+|||.+++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 139 (197)
T 3eey_A 98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI 139 (197)
T ss_dssp EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence 988644 11122355679999999999999999875
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-16 Score=124.31 Aligned_cols=146 Identities=18% Similarity=0.203 Sum_probs=108.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.++++....+ .++ .++++|+.+... .. +||+|++.
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v-~~~~~D~~~~~~-~~--~fD~Vi~~ 199 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRM-SAYNMDNRDFPG-EN--IADRILMG 199 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTE-EEECSCTTTCCC-CS--CEEEEEEC
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceE-EEEECCHHHhcc-cC--CccEEEEC
Confidence 5688999999999999999988887679999999999999999988655 236 899999998876 33 79999996
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee---ecCCC
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK---VTGMP 234 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~---~~~~~ 234 (256)
... ....+++.+.++|+|||.+++.+....... .....+++.+.++++||.+..... ....|
T Consensus 200 ~p~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---------~~~~~~~i~~~~~~~G~~~~~~~~~~v~~~~p 264 (278)
T 2frn_A 200 YVV------RTHEFIPKALSIAKDGAIIHYHNTVPEKLM---------PREPFETFKRITKEYGYDVEKLNELKIKRYAP 264 (278)
T ss_dssp CCS------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGT---------TTTTHHHHHHHHHHTTCEEEEEEEEEEEEETT
T ss_pred Cch------hHHHHHHHHHHHCCCCeEEEEEEeeccccc---------cccHHHHHHHHHHHcCCeeEEeeeEEEEecCC
Confidence 432 224688899999999999999764432110 112457788999999998876222 23334
Q ss_pred CcceeeeEEE
Q psy8370 235 KSLFKIYMFA 244 (256)
Q Consensus 235 ~~~~~~~~~~ 244 (256)
...+++.-..
T Consensus 265 ~~~h~~~d~~ 274 (278)
T 2frn_A 265 GVWHVVLDLR 274 (278)
T ss_dssp TEEEEEEEEE
T ss_pred CceEEEEEEE
Confidence 4444444333
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-16 Score=124.78 Aligned_cols=149 Identities=14% Similarity=0.133 Sum_probs=102.3
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeC-CHHHHHHHHHHH-----HhcC------CCcce
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQ-SSKFIEQAKEEI-----LKDC------DKLDK 133 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~-s~~~~~~a~~~~-----~~~~------~~i~~ 133 (256)
...+.+.+.......++.+|||||||+|.++..++..+..+|+++|+ |+.+++.++++. ...+ .++ .
T Consensus 64 ~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v-~ 142 (281)
T 3bzb_A 64 ARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASP-K 142 (281)
T ss_dssp HHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCC-E
T ss_pred HHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCe-E
Confidence 33344443233334567899999999999999988877669999999 899999999998 3322 145 6
Q ss_pred EEEccccccCC------CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcC---C--CcEEEEEecccCCCCccccCC
Q psy8370 134 CYNVGIQDFKP------EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILN---K--NGIIIIKDNVASGVKNEYDDE 202 (256)
Q Consensus 134 ~~~~d~~~~~~------~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lk---p--gG~l~i~~~~~~~~~~~~~~~ 202 (256)
+...++.+... ... +||+|++..++++. +....+++.+.++|+ | ||.+++......
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~--~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~--------- 209 (281)
T 3bzb_A 143 VVPYRWGDSPDSLQRCTGLQ--RFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVTFTHHR--------- 209 (281)
T ss_dssp EEECCTTSCTHHHHHHHSCS--SBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEEECC-----------
T ss_pred EEEecCCCccHHHHhhccCC--CCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEEEEeee---------
Confidence 66555443211 123 79999999998887 556789999999999 9 998877522111
Q ss_pred CCceeeCHHHHHHHHHhcC-CcEEEeee
Q psy8370 203 DSSVVRSLPQFCLLFSKAN-LKCVKSEK 229 (256)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~g-f~~~~~~~ 229 (256)
........++...+++.| |++.....
T Consensus 210 -~~~~~~~~~~~~~l~~~G~f~v~~~~~ 236 (281)
T 3bzb_A 210 -PHLAERDLAFFRLVNADGALIAEPWLS 236 (281)
T ss_dssp -------CTHHHHHHHHSTTEEEEEEEC
T ss_pred -cccchhHHHHHHHHHhcCCEEEEEecc
Confidence 111122356777889999 99887643
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-16 Score=115.62 Aligned_cols=130 Identities=15% Similarity=0.018 Sum_probs=98.3
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...++.+|||+|||+|.++..++... ..+|+++|+|+.+++.++++....+.. .. ++..|..+..+.. .++||+|+
T Consensus 22 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~-~~~~D~i~ 99 (178)
T 3hm2_A 22 APKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDV-PDNPDVIF 99 (178)
T ss_dssp CCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGC-CSCCSEEE
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhcc-CCCCCEEE
Confidence 46778899999999999999998774 238999999999999999998866532 21 5667765433322 13799999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeee
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
+...+++ ..+++++.+.|+|||.+++..... .+...+...+++.|+++......
T Consensus 100 ~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~ 153 (178)
T 3hm2_A 100 IGGGLTA------PGVFAAAWKRLPVGGRLVANAVTV---------------ESEQMLWALRKQFGGTISSFAIS 153 (178)
T ss_dssp ECC-TTC------TTHHHHHHHTCCTTCEEEEEECSH---------------HHHHHHHHHHHHHCCEEEEEEEE
T ss_pred ECCcccH------HHHHHHHHHhcCCCCEEEEEeecc---------------ccHHHHHHHHHHcCCeeEEEEee
Confidence 9998877 368999999999999999864221 13456778899999988765543
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.69 E-value=4e-16 Score=119.58 Aligned_cols=132 Identities=18% Similarity=0.170 Sum_probs=100.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccC--CCCCCCceeEEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFK--PEDLNIKYDVIW 155 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~--~~~~~~~~D~V~ 155 (256)
.++.+|||||||+|.++..++.... .+++|+|+|+.+++.++++....+ .++ .++.+|+.+++ ...+ +||+|+
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~--~~D~i~ 116 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNI-KLLWVDGSDLTDYFEDG--EIDRLY 116 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSE-EEEECCSSCGGGTSCTT--CCSEEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCE-EEEeCCHHHHHhhcCCC--CCCEEE
Confidence 4578999999999999999988753 389999999999999999987665 467 89999998865 3333 799999
Q ss_pred echhhhccCHH------HHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 156 IQWVLMFILDE------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 156 ~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
++....+.... ....+++.+.++|+|||.+++...... ..+++.+.+.++||.++....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------~~~~~~~~~~~~g~~~~~~~~ 181 (214)
T 1yzh_A 117 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG---------------LFEYSLVSFSQYGMKLNGVWL 181 (214)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH---------------HHHHHHHHHHHHTCEEEEEES
T ss_pred EECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHH---------------HHHHHHHHHHHCCCeeeeccc
Confidence 98653322100 124799999999999999998631100 125667888899999877653
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.9e-16 Score=118.83 Aligned_cols=140 Identities=16% Similarity=0.114 Sum_probs=109.1
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
+++.+|+|||||+|.++..++..+.. +|+++|+++.+++.|+++....+ .++ .+..+|..+...+.. .||+|++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I-~~~~gD~l~~~~~~~--~~D~Ivi 96 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKI-DVRLANGLSAFEEAD--NIDTITI 96 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTE-EEEECSGGGGCCGGG--CCCEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-EEEECchhhcccccc--ccCEEEE
Confidence 56789999999999999999888743 89999999999999999998776 357 999999988765543 6999887
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCc
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKS 236 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~ 236 (256)
..+.. +.+..++....+.|+++|.|+++.. .....+++.+.++||.+++....... ..
T Consensus 97 aGmGg----~lI~~IL~~~~~~l~~~~~lIlqp~-----------------~~~~~lr~~L~~~Gf~i~~E~lv~e~-~~ 154 (230)
T 3lec_A 97 CGMGG----RLIADILNNDIDKLQHVKTLVLQPN-----------------NREDDLRKWLAANDFEIVAEDILTEN-DK 154 (230)
T ss_dssp EEECH----HHHHHHHHHTGGGGTTCCEEEEEES-----------------SCHHHHHHHHHHTTEEEEEEEEEEC---C
T ss_pred eCCch----HHHHHHHHHHHHHhCcCCEEEEECC-----------------CChHHHHHHHHHCCCEEEEEEEEEEC-CE
Confidence 65433 3356789999999999999999631 12578899999999999886643322 24
Q ss_pred ceeeeEEE
Q psy8370 237 LFKIYMFA 244 (256)
Q Consensus 237 ~~~~~~~~ 244 (256)
.|.+....
T Consensus 155 ~Yeii~~~ 162 (230)
T 3lec_A 155 RYEILVVK 162 (230)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 55555433
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-16 Score=125.22 Aligned_cols=143 Identities=10% Similarity=0.057 Sum_probs=96.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC-CCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED-LNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~-~~~~~D~V~~~~ 158 (256)
.++.+|||||||||.++..+++.+..+|+|+|+|+.|++.+.+.- .++..+...++..+.... ...+||+|++..
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~----~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~ 159 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD----DRVRSMEQYNFRYAEPVDFTEGLPSFASIDV 159 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC----TTEEEECSCCGGGCCGGGCTTCCCSEEEECC
T ss_pred ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----cccceecccCceecchhhCCCCCCCEEEEEe
Confidence 456799999999999999998888779999999999998754321 122112223443333211 112599999988
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCC------ceeeCHHHHHHHHHhcCCcEEEeeeec
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDS------SVVRSLPQFCLLFSKANLKCVKSEKVT 231 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~gf~~~~~~~~~ 231 (256)
+++++ ..++.+++++|+|||.+++............-...+ ......+++..++.++||.+.......
T Consensus 160 sf~sl-----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 160 SFISL-----NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSP 233 (291)
T ss_dssp SSSCG-----GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECS
T ss_pred eHhhH-----HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECC
Confidence 88766 479999999999999999863221111110100111 122477889999999999998876543
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-16 Score=122.48 Aligned_cols=147 Identities=11% Similarity=0.024 Sum_probs=93.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCC-HHHHHHH---HHHHHhcC-CCcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQS-SKFIEQA---KEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s-~~~~~~a---~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
.++.+|||||||+|.++..++..... +|+|+|+| +.|++.| +++....+ .++ .+..+|+.+++.... +.+|.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v-~~~~~d~~~l~~~~~-d~v~~ 100 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNV-VFVIAAAESLPFELK-NIADS 100 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSE-EEECCBTTBCCGGGT-TCEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEcCHHHhhhhcc-CeEEE
Confidence 57789999999999999999754433 89999999 7777776 66555444 356 899999988853221 25777
Q ss_pred EEechhhhccC---HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcccc-CCCCceee-----CHHHHHHHHHhcCCcE
Q psy8370 154 IWIQWVLMFIL---DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD-DEDSSVVR-----SLPQFCLLFSKANLKC 224 (256)
Q Consensus 154 V~~~~~l~~~~---~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~l~~~gf~~ 224 (256)
|+++..+.+.. ......++++++++|||||.+++.......... .. ........ ..+++...++++||++
T Consensus 101 i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v 179 (225)
T 3p2e_A 101 ISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEE-AEIKKRGLPLLSKAYFLSEQYKAELSNSGFRI 179 (225)
T ss_dssp EEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC---------------CCHHHHHSHHHHHHHHHHTCEE
T ss_pred EEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchh-chhhhcCCCCCChhhcchHHHHHHHHHcCCCe
Confidence 76654322110 011246899999999999999994322221100 00 00000011 2234889999999999
Q ss_pred EEeee
Q psy8370 225 VKSEK 229 (256)
Q Consensus 225 ~~~~~ 229 (256)
.....
T Consensus 180 ~~~~~ 184 (225)
T 3p2e_A 180 DDVKE 184 (225)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 87664
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.1e-16 Score=119.64 Aligned_cols=138 Identities=12% Similarity=0.038 Sum_probs=107.0
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
+++.+|||||||+|.++..++..+.. +|+++|+++.+++.|+++....+ .++ .+..+|..+...+.. +||+|++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I-~v~~gD~l~~~~~~~--~~D~Ivi 96 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQI-DVRKGNGLAVIEKKD--AIDTIVI 96 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTE-EEEECSGGGGCCGGG--CCCEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceE-EEEecchhhccCccc--cccEEEE
Confidence 56789999999999999999888743 89999999999999999998776 347 899999887765433 5999887
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCc
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKS 236 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~ 236 (256)
..+.. +.+..++....+.|+++|.|++... .....+++.+.++||.+++....... ..
T Consensus 97 agmGg----~lI~~IL~~~~~~L~~~~~lIlq~~-----------------~~~~~lr~~L~~~Gf~i~~E~lv~e~-~k 154 (244)
T 3gnl_A 97 AGMGG----TLIRTILEEGAAKLAGVTKLILQPN-----------------IAAWQLREWSEQNNWLITSEAILRED-NK 154 (244)
T ss_dssp EEECH----HHHHHHHHHTGGGGTTCCEEEEEES-----------------SCHHHHHHHHHHHTEEEEEEEEEEET-TE
T ss_pred eCCch----HHHHHHHHHHHHHhCCCCEEEEEcC-----------------CChHHHHHHHHHCCCEEEEEEEEEEC-CE
Confidence 54433 3456789999999999999999631 13578899999999999876533222 23
Q ss_pred ceeeeE
Q psy8370 237 LFKIYM 242 (256)
Q Consensus 237 ~~~~~~ 242 (256)
.|.+..
T Consensus 155 ~Yeii~ 160 (244)
T 3gnl_A 155 VYEIMV 160 (244)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 444443
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.8e-16 Score=121.23 Aligned_cols=132 Identities=14% Similarity=0.046 Sum_probs=100.9
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCC-CCCceeEEE
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPED-LNIKYDVIW 155 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~-~~~~~D~V~ 155 (256)
..++.+|||||||+|..+..++... ..+|+++|+|+.+++.++++....+. ++ .++++|+.++.... ..++||+|+
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v-~~~~~d~~~~~~~~~~~~~fD~I~ 156 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGA-RALWGRAEVLAREAGHREAYARAV 156 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSE-EEEECCHHHHTTSTTTTTCEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCce-EEEECcHHHhhcccccCCCceEEE
Confidence 3567899999999999999988764 33899999999999999999887663 56 99999998876531 113899999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeee
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
+..+ .++..+++.+.++|+|||.+++...... .....++...++..||.+.+....
T Consensus 157 s~a~------~~~~~ll~~~~~~LkpgG~l~~~~g~~~-------------~~e~~~~~~~l~~~G~~~~~~~~~ 212 (249)
T 3g89_A 157 ARAV------APLCVLSELLLPFLEVGGAAVAMKGPRV-------------EEELAPLPPALERLGGRLGEVLAL 212 (249)
T ss_dssp EESS------CCHHHHHHHHGGGEEEEEEEEEEECSCC-------------HHHHTTHHHHHHHHTEEEEEEEEE
T ss_pred ECCc------CCHHHHHHHHHHHcCCCeEEEEEeCCCc-------------HHHHHHHHHHHHHcCCeEEEEEEe
Confidence 9754 2345799999999999999998532110 111345667788899998876644
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=122.80 Aligned_cols=144 Identities=12% Similarity=0.045 Sum_probs=97.4
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHH----hcC-CCcceEEEccccccCCCCCCCcee
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEIL----KDC-DKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~----~~~-~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
..++.+|||||||+|.++..++.... .+|+|+|+|+.|++.+.+... ..+ .++ .+.++|+.+++.... . |
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v-~~~~~d~~~l~~~~~--~-d 100 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNL-LYLWATAERLPPLSG--V-G 100 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTE-EEEECCSTTCCSCCC--E-E
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCce-EEEecchhhCCCCCC--C-C
Confidence 46788999999999999999988752 399999999998886443332 222 356 899999998776544 3 5
Q ss_pred EEE---echhhh--ccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCcee----eCHHHHHHHHHhcCCc
Q psy8370 153 VIW---IQWVLM--FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVV----RSLPQFCLLFSKANLK 223 (256)
Q Consensus 153 ~V~---~~~~l~--~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gf~ 223 (256)
.|. +....+ ++++ ...++++++++|||||.+++............ ....... ...+++..++.++||+
T Consensus 101 ~v~~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~aGf~ 177 (218)
T 3mq2_A 101 ELHVLMPWGSLLRGVLGS--SPEMLRGMAAVCRPGASFLVALNLHAWRPSVP-EVGEHPEPTPDSADEWLAPRYAEAGWK 177 (218)
T ss_dssp EEEEESCCHHHHHHHHTS--SSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCG-GGTTCCCCCHHHHHHHHHHHHHHTTEE
T ss_pred EEEEEccchhhhhhhhcc--HHHHHHHHHHHcCCCcEEEEEecccccccccc-ccccCCccchHHHHHHHHHHHHHcCCC
Confidence 554 333332 4432 25899999999999999999643322211101 1111111 2234577899999999
Q ss_pred EEEeee
Q psy8370 224 CVKSEK 229 (256)
Q Consensus 224 ~~~~~~ 229 (256)
+.....
T Consensus 178 i~~~~~ 183 (218)
T 3mq2_A 178 LADCRY 183 (218)
T ss_dssp EEEEEE
T ss_pred ceeeec
Confidence 987664
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-16 Score=130.69 Aligned_cols=139 Identities=22% Similarity=0.217 Sum_probs=108.7
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..+..+|||||||+|.++..+++.+.. +++++|+ +.+++.+++. .++ .+..+|+.+ +. . .||+|++.
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~v-~~~~~d~~~-~~--~--~~D~v~~~ 274 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-----SGI-EHVGGDMFA-SV--P--QGDAMILK 274 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTE-EEEECCTTT-CC--C--CEEEEEEE
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-----CCC-EEEeCCccc-CC--C--CCCEEEEe
Confidence 566789999999999999999887654 7888999 9988877642 356 899999876 22 2 39999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc---------ccC----CCCceeeCHHHHHHHHHhcCCcE
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE---------YDD----EDSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---------~~~----~~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
.++|+++++....++++++++|+|||.+++.+...+..... .+. ......++.+++.++++++||++
T Consensus 275 ~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 354 (372)
T 1fp1_D 275 AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSK 354 (372)
T ss_dssp SSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSE
T ss_pred cccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCce
Confidence 99999988777799999999999999999987654332110 000 01123468999999999999999
Q ss_pred EEeee
Q psy8370 225 VKSEK 229 (256)
Q Consensus 225 ~~~~~ 229 (256)
++...
T Consensus 355 ~~~~~ 359 (372)
T 1fp1_D 355 FQVAC 359 (372)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88764
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-16 Score=121.22 Aligned_cols=151 Identities=11% Similarity=-0.026 Sum_probs=103.8
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC---CCCCCCc
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK---PEDLNIK 150 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~---~~~~~~~ 150 (256)
.....++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.+.+..+.. .++ .+..+|+.+.. .... +
T Consensus 72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v-~~~~~d~~~~~~~~~~~~--~ 147 (233)
T 2ipx_A 72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNI-IPVIEDARHPHKYRMLIA--M 147 (233)
T ss_dssp CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTE-EEECSCTTCGGGGGGGCC--C
T ss_pred eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-CCe-EEEEcccCChhhhcccCC--c
Confidence 3456778899999999999999998773 248999999999888777766554 367 88999998743 2233 7
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeee
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
||+|++... ..+....+++++.+.|+|||.+++.......... ......-..+ .++++++||++++....
T Consensus 148 ~D~V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~~~-~~~l~~~Gf~~~~~~~~ 217 (233)
T 2ipx_A 148 VDVIFADVA----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDST-----ASAEAVFASE-VKKMQQENMKPQEQLTL 217 (233)
T ss_dssp EEEEEECCC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSS-----SCHHHHHHHH-HHTTGGGTEEEEEEEEC
T ss_pred EEEEEEcCC----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccC-----CCHHHHHHHH-HHHHHHCCCceEEEEec
Confidence 999999654 2234456788999999999999996432110000 0000001123 47888999999886655
Q ss_pred cCCCCcceee
Q psy8370 231 TGMPKSLFKI 240 (256)
Q Consensus 231 ~~~~~~~~~~ 240 (256)
..++...+-+
T Consensus 218 ~~~~~~~~~v 227 (233)
T 2ipx_A 218 EPYERDHAVV 227 (233)
T ss_dssp TTTSSSEEEE
T ss_pred CCccCCcEEE
Confidence 5566554433
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-15 Score=117.40 Aligned_cols=113 Identities=19% Similarity=0.287 Sum_probs=92.1
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
..++.+|||||||+|.++..++ .+++++|+|+. ++ .+..+|+.+.+...+ +||+|++..
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~--------------~~-~~~~~d~~~~~~~~~--~fD~v~~~~ 123 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSIR----NPVHCFDLASL--------------DP-RVTVCDMAQVPLEDE--SVDVAVFCL 123 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS--------------ST-TEEESCTTSCSCCTT--CEEEEEEES
T ss_pred cCCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC--------------Cc-eEEEeccccCCCCCC--CEeEEEEeh
Confidence 3567899999999999998772 48999999987 34 788999988765555 899999999
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
++|+ .+...++++++++|+|||.+++.+.... ..+.+++.++++++||+++...
T Consensus 124 ~l~~---~~~~~~l~~~~~~L~~gG~l~i~~~~~~-------------~~~~~~~~~~l~~~Gf~~~~~~ 177 (215)
T 2zfu_A 124 SLMG---TNIRDFLEEANRVLKPGGLLKVAEVSSR-------------FEDVRTFLRAVTKLGFKIVSKD 177 (215)
T ss_dssp CCCS---SCHHHHHHHHHHHEEEEEEEEEEECGGG-------------CSCHHHHHHHHHHTTEEEEEEE
T ss_pred hccc---cCHHHHHHHHHHhCCCCeEEEEEEcCCC-------------CCCHHHHHHHHHHCCCEEEEEe
Confidence 9974 3456899999999999999999764321 1278999999999999988754
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.6e-16 Score=113.44 Aligned_cols=104 Identities=14% Similarity=0.097 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.++.+|||||||+|.++..++...+. +|+++|+|+.|++.++++....+... .+...|.....+ .+ +||+|++..
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~-~v~~~d~~~~~~-~~--~~DvVLa~k 123 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTI-KYRFLNKESDVY-KG--TYDVVFLLK 123 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSS-EEEEECCHHHHT-TS--EEEEEEEET
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCc-cEEEecccccCC-CC--CcChhhHhh
Confidence 56889999999999999998766322 99999999999999999998766443 344466654433 33 799999999
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
++|++ ++....+.++.+.|+|||.++-.+
T Consensus 124 ~LHlL--~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 124 MLPVL--KQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp CHHHH--HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred HHHhh--hhhHHHHHHHHHHhCCCCEEEEeC
Confidence 99999 555667779999999999998765
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8.2e-16 Score=117.40 Aligned_cols=139 Identities=14% Similarity=0.062 Sum_probs=106.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
+++.+|+|||||+|.++..++..+.. +|+++|+++.+++.|+++....+ .++ .+..+|..+..+..+ .||+|+.
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i-~~~~~d~l~~l~~~~--~~D~Ivi 90 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKI-QVRLANGLAAFEETD--QVSVITI 90 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTE-EEEECSGGGGCCGGG--CCCEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceE-EEEECchhhhcccCc--CCCEEEE
Confidence 56789999999999999999887743 89999999999999999998776 357 899999865544333 5999887
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCc
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKS 236 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~ 236 (256)
..+-. +.+..++..+...|+|+|.+++... .....+++.+.++||.+++...... ...
T Consensus 91 aG~Gg----~~i~~Il~~~~~~L~~~~~lVlq~~-----------------~~~~~vr~~L~~~Gf~i~~e~lv~e-~~~ 148 (225)
T 3kr9_A 91 AGMGG----RLIARILEEGLGKLANVERLILQPN-----------------NREDDLRIWLQDHGFQIVAESILEE-AGK 148 (225)
T ss_dssp EEECH----HHHHHHHHHTGGGCTTCCEEEEEES-----------------SCHHHHHHHHHHTTEEEEEEEEEEE-TTE
T ss_pred cCCCh----HHHHHHHHHHHHHhCCCCEEEEECC-----------------CCHHHHHHHHHHCCCEEEEEEEEEE-CCE
Confidence 65422 3356899999999999999998632 1357889999999999988653222 223
Q ss_pred ceeeeEE
Q psy8370 237 LFKIYMF 243 (256)
Q Consensus 237 ~~~~~~~ 243 (256)
.|.+...
T Consensus 149 ~Yeii~~ 155 (225)
T 3kr9_A 149 FYEILVV 155 (225)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 4555443
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-15 Score=115.71 Aligned_cols=152 Identities=13% Similarity=0.021 Sum_probs=98.9
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC-CCCceeE
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED-LNIKYDV 153 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~-~~~~~D~ 153 (256)
..+.++.+|||+|||+|.++..++.... ..|+++|+++.|++...+..... .++ .++.+|+....... -.++||+
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-~nv-~~i~~Da~~~~~~~~~~~~~D~ 149 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-PNI-FPLLADARFPQSYKSVVENVDV 149 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-TTE-EEEECCTTCGGGTTTTCCCEEE
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCe-EEEEcccccchhhhccccceEE
Confidence 3578899999999999999999877532 28999999999876554444332 367 88899987653211 1237999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCC
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGM 233 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~ 233 (256)
|++.... + +....+.+.+.+.|||||.|+++......... .... ...++..+.++++||++++...-..+
T Consensus 150 I~~d~a~---~-~~~~il~~~~~~~LkpGG~lvisik~~~~d~t-~~~~-----e~~~~~~~~L~~~gf~~~~~~~l~p~ 219 (232)
T 3id6_C 150 LYVDIAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIKARSIDVT-KDPK-----EIYKTEVEKLENSNFETIQIINLDPY 219 (232)
T ss_dssp EEECCCC---T-THHHHHHHHHHHHEEEEEEEEEEEC--------CCSS-----SSTTHHHHHHHHTTEEEEEEEECTTT
T ss_pred EEecCCC---h-hHHHHHHHHHHHhCCCCeEEEEEEccCCcccC-CCHH-----HHHHHHHHHHHHCCCEEEEEeccCCC
Confidence 9998543 2 33334556677799999999997322211111 0000 11245567888899999887755555
Q ss_pred CCcceee
Q psy8370 234 PKSLFKI 240 (256)
Q Consensus 234 ~~~~~~~ 240 (256)
..+.+-+
T Consensus 220 ~~~h~~v 226 (232)
T 3id6_C 220 DKDHAIV 226 (232)
T ss_dssp CSSCEEE
T ss_pred cCceEEE
Confidence 4454444
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.3e-16 Score=127.18 Aligned_cols=141 Identities=13% Similarity=0.075 Sum_probs=101.9
Q ss_pred cccCCCCccccchhhhH-HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHH--
Q psy8370 50 MLNGYSSISDLDIQTSN-QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEIL-- 125 (256)
Q Consensus 50 ~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~-- 125 (256)
.+..|..++..-..+.. ..+..++ ......++.+|||||||+|.++..++.. +..+++|||+++.+++.|+++..
T Consensus 142 ~L~~Ye~Fs~~vYGEt~~~~i~~il-~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~f 220 (438)
T 3uwp_A 142 KLNNYEPFSPEVYGETSFDLVAQMI-DEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREF 220 (438)
T ss_dssp GSCCCSSSCGGGGGGTHHHHHHHHH-HHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred HhcCcccCCCcccCCCCHHHHHHHH-HhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 45556555444333332 4555555 4446788999999999999999998765 44469999999999999987542
Q ss_pred -----hcC---CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCC
Q psy8370 126 -----KDC---DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV 195 (256)
Q Consensus 126 -----~~~---~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 195 (256)
..+ .++ .++++|+.+.+.....+.+|+|+++..+ +. ++....|+++++.|||||.|++.+...+..
T Consensus 221 rkr~~~~Gl~~~rV-efi~GD~~~lp~~d~~~~aDVVf~Nn~~-F~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d 294 (438)
T 3uwp_A 221 RKWMKWYGKKHAEY-TLERGDFLSEEWRERIANTSVIFVNNFA-FG--PEVDHQLKERFANMKEGGRIVSSKPFAPLN 294 (438)
T ss_dssp HHHHHHHTBCCCEE-EEEECCTTSHHHHHHHHTCSEEEECCTT-CC--HHHHHHHHHHHTTSCTTCEEEESSCSSCTT
T ss_pred HHHHHHhCCCCCCe-EEEECcccCCccccccCCccEEEEcccc-cC--chHHHHHHHHHHcCCCCcEEEEeecccCCC
Confidence 122 467 9999999887653210269999998665 33 566788899999999999999986655543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.4e-16 Score=127.94 Aligned_cols=107 Identities=17% Similarity=0.254 Sum_probs=92.7
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.++.+|||+|||+|.++..++..+. +|+++|+|+.+++.+++++...+..+ .++..|+.+...... +||+|+++..
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~v-~~~~~D~~~~~~~~~--~fD~Ii~npp 307 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKA-QALHSDVDEALTEEA--RFDIIVTNPP 307 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCCC-EEEECSTTTTSCTTC--CEEEEEECCC
T ss_pred CCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCe-EEEEcchhhccccCC--CeEEEEECCc
Confidence 4678999999999999999988876 99999999999999999998776567 899999988776544 8999999988
Q ss_pred hhc---cCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 160 LMF---ILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 160 l~~---~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
+++ ...+....+++++.++|+|||.++++.+
T Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 308 FHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp CCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 877 3336778899999999999999999743
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=120.26 Aligned_cols=140 Identities=14% Similarity=0.162 Sum_probs=105.1
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKP 144 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~ 144 (256)
.++..++ .... .++.+|||+|||+|..+..++... ..+|+++|+|+.+++.++++....+ .++ .+..+|+.+..+
T Consensus 97 ~l~~~~l-~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v-~~~~~d~~~~~~ 173 (276)
T 2b3t_A 97 CLVEQAL-ARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNI-HILQSDWFSALA 173 (276)
T ss_dssp HHHHHHH-HHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSE-EEECCSTTGGGT
T ss_pred HHHHHHH-Hhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCce-EEEEcchhhhcc
Confidence 3444444 3323 567899999999999999998663 3399999999999999999987665 356 899999877543
Q ss_pred CCCCCceeEEEec-------------hhhhccCH----------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccC
Q psy8370 145 EDLNIKYDVIWIQ-------------WVLMFILD----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDD 201 (256)
Q Consensus 145 ~~~~~~~D~V~~~-------------~~l~~~~~----------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~ 201 (256)
.. +||+|+++ .+++|.|. .....+++.+.+.|+|||.+++...
T Consensus 174 -~~--~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~----------- 239 (276)
T 2b3t_A 174 -GQ--QFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG----------- 239 (276)
T ss_dssp -TC--CEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-----------
T ss_pred -cC--CccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-----------
Confidence 33 79999997 23333331 3457899999999999999998621
Q ss_pred CCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 202 EDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
..+.+++.++++++||..+...
T Consensus 240 -----~~~~~~~~~~l~~~Gf~~v~~~ 261 (276)
T 2b3t_A 240 -----WQQGEAVRQAFILAGYHDVETC 261 (276)
T ss_dssp -----SSCHHHHHHHHHHTTCTTCCEE
T ss_pred -----chHHHHHHHHHHHCCCcEEEEE
Confidence 1246788999999999876544
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.7e-16 Score=118.22 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=96.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccC--CCCCCCceeEEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFK--PEDLNIKYDVIW 155 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~--~~~~~~~~D~V~ 155 (256)
.++.+|||||||+|.++..++.... .+++|+|+|+.+++.|+++....+ .++ .++.+|+.+++ ...+ +||.|+
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv-~~~~~d~~~l~~~~~~~--~~d~v~ 113 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNV-KLLNIDADTLTDVFEPG--EVKRVY 113 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSE-EEECCCGGGHHHHCCTT--SCCEEE
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCE-EEEeCCHHHHHhhcCcC--CcCEEE
Confidence 4578999999999999999987743 389999999999999999988765 357 89999998764 2334 799998
Q ss_pred echhhhccCHH------HHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 156 IQWVLMFILDE------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 156 ~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
+.....+.... ....+++++.++|+|||.+++..... .....+...+.++||......
T Consensus 114 ~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~---------------~~~~~~~~~~~~~g~~~~~~~ 177 (213)
T 2fca_A 114 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR---------------GLFEYSLKSFSEYGLLLTYVS 177 (213)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH---------------HHHHHHHHHHHHHTCEEEEEE
T ss_pred EECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH---------------HHHHHHHHHHHHCCCcccccc
Confidence 76432221100 12478999999999999999863110 012455677888899876544
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=120.84 Aligned_cols=104 Identities=14% Similarity=0.153 Sum_probs=84.5
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeE
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
.....++.+|||||||+|.++..++++ ...+|+|+|+|+.+++.|++++...+ .++ .+.++|+.+++ .. +||+
T Consensus 117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v-~~v~gDa~~l~--d~--~FDv 191 (298)
T 3fpf_A 117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGV-NVITGDETVID--GL--EFDV 191 (298)
T ss_dssp HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSE-EEEESCGGGGG--GC--CCSE
T ss_pred HcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCe-EEEECchhhCC--CC--CcCE
Confidence 456789999999999999766444343 23399999999999999999988655 467 99999998875 34 7999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|++... . ++..++++++.++|||||.+++..
T Consensus 192 V~~~a~---~--~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 192 LMVAAL---A--EPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp EEECTT---C--SCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEECCC---c--cCHHHHHHHHHHHcCCCcEEEEEc
Confidence 998654 3 345689999999999999999975
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.5e-16 Score=126.57 Aligned_cols=139 Identities=21% Similarity=0.312 Sum_probs=108.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..+..+|||||||+|.++..+++.... +++++|+ +.+++.+++. .++ .+..+|+.+ +. . .||+|++.
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v-~~~~~d~~~-~~--p--~~D~v~~~ 253 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-----NNL-TYVGGDMFT-SI--P--NADAVLLK 253 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-----TTE-EEEECCTTT-CC--C--CCSEEEEE
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-----CCc-EEEeccccC-CC--C--CccEEEee
Confidence 456789999999999999999877533 8999999 9998877652 246 899999865 21 1 39999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCC---CcEEEEEecccCCCCcc---------cc---CCCCceeeCHHHHHHHHHhcCC
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNK---NGIIIIKDNVASGVKNE---------YD---DEDSSVVRSLPQFCLLFSKANL 222 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~---------~~---~~~~~~~~~~~~~~~~l~~~gf 222 (256)
.++|++++++...++++++++|+| ||.+++.+......... .. .......++.++|.++++++||
T Consensus 254 ~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf 333 (352)
T 1fp2_A 254 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGF 333 (352)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTC
T ss_pred hhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCC
Confidence 999999887777999999999999 99999987654432210 00 0011234689999999999999
Q ss_pred cEEEeee
Q psy8370 223 KCVKSEK 229 (256)
Q Consensus 223 ~~~~~~~ 229 (256)
++++...
T Consensus 334 ~~~~~~~ 340 (352)
T 1fp2_A 334 QHYKISP 340 (352)
T ss_dssp CEEEEEE
T ss_pred CeeEEEe
Confidence 9988764
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-15 Score=111.71 Aligned_cols=123 Identities=15% Similarity=0.179 Sum_probs=97.5
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
...++.+|||+|||+|.++..++. ...+++++|+++.+++.++++....+ .++ .+..+|+.+. .... +||+|++
T Consensus 32 ~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~~d~~~~-~~~~--~~D~i~~ 106 (183)
T 2yxd_A 32 NLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNC-QIIKGRAEDV-LDKL--EFNKAFI 106 (183)
T ss_dssp CCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSE-EEEESCHHHH-GGGC--CCSEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcE-EEEECCcccc-ccCC--CCcEEEE
Confidence 456788999999999999999977 44499999999999999999988765 356 8899998873 3334 7999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
..+ .....+++.+.+. |||.+++..... .+..++.+.++++||.+....
T Consensus 107 ~~~------~~~~~~l~~~~~~--~gG~l~~~~~~~---------------~~~~~~~~~l~~~g~~~~~~~ 155 (183)
T 2yxd_A 107 GGT------KNIEKIIEILDKK--KINHIVANTIVL---------------ENAAKIINEFESRGYNVDAVN 155 (183)
T ss_dssp CSC------SCHHHHHHHHHHT--TCCEEEEEESCH---------------HHHHHHHHHHHHTTCEEEEEE
T ss_pred CCc------ccHHHHHHHHhhC--CCCEEEEEeccc---------------ccHHHHHHHHHHcCCeEEEEE
Confidence 887 2235788888888 999999974221 124678889999999877654
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.4e-16 Score=117.13 Aligned_cols=105 Identities=15% Similarity=0.089 Sum_probs=88.6
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeE
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
......++.+|||+|||+|.++..++..+. +|+++|+++.+++.+++++...+ .++ .+..+|+.+..+... +||+
T Consensus 71 ~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~--~~D~ 146 (210)
T 3lbf_A 71 ELLELTPQSRVLEIGTGSGYQTAILAHLVQ-HVCSVERIKGLQWQARRRLKNLDLHNV-STRHGDGWQGWQARA--PFDA 146 (210)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHHHTTCCSE-EEEESCGGGCCGGGC--CEEE
T ss_pred HhcCCCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEecCHHHHHHHHHHHHHcCCCce-EEEECCcccCCccCC--CccE
Confidence 333567889999999999999999988854 99999999999999999988765 356 899999988665544 8999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
|++..+++++++ .+.+.|+|||.+++....
T Consensus 147 i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 147 IIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred EEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 999999999863 478999999999997543
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-16 Score=120.51 Aligned_cols=107 Identities=12% Similarity=0.115 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccC---CCCCCCceeEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFK---PEDLNIKYDVI 154 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~---~~~~~~~~D~V 154 (256)
.++.+|||||||+|.++..++..... .|+|+|+|+.+++.++++....+ .++ .++.+|+.+.. ...+ +||.|
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv-~~~~~Da~~~l~~~~~~~--~~d~v 109 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNL-RVMCHDAVEVLHKMIPDN--SLRMV 109 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSE-EEECSCHHHHHHHHSCTT--CEEEE
T ss_pred CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcE-EEEECCHHHHHHHHcCCC--ChheE
Confidence 36789999999999999999887643 89999999999999999987665 467 99999988752 2334 89999
Q ss_pred EechhhhccCHHHH------HHHHHHHhhhcCCCcEEEEEe
Q psy8370 155 WIQWVLMFILDEDI------IKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 155 ~~~~~l~~~~~~~~------~~~l~~~~~~LkpgG~l~i~~ 189 (256)
++.+...+...... ..+++.++++|||||.+++..
T Consensus 110 ~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 110 QLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp EEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 98744332211111 259999999999999999963
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.7e-17 Score=124.45 Aligned_cols=139 Identities=9% Similarity=0.035 Sum_probs=88.3
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC----CCcceEEE-ccccccCCCCCCCceeE
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC----DKLDKCYN-VGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~i~~~~~-~d~~~~~~~~~~~~~D~ 153 (256)
..++.+|||||||+|.++..+++.+..+|+|+|+|+.|++.++++..... .++ .+.. .++... .+|.
T Consensus 35 ~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~d~ 106 (232)
T 3opn_A 35 EINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNF-RNAVLADFEQG-------RPSF 106 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCG-GGCCGGGCCSC-------CCSE
T ss_pred CCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceE-EEeCHhHcCcC-------CCCE
Confidence 34567999999999999999988886699999999999998776432210 112 1111 222111 1344
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-cccC-----CCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-EYDD-----EDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
+.+..++.++ ..++++++++|||||.+++.......... .... .......+.+++.++++++||++...
T Consensus 107 ~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~ 181 (232)
T 3opn_A 107 TSIDVSFISL-----DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGL 181 (232)
T ss_dssp EEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred EEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEE
Confidence 4443333333 46999999999999999986311100000 0100 01112247789999999999999887
Q ss_pred eee
Q psy8370 228 EKV 230 (256)
Q Consensus 228 ~~~ 230 (256)
...
T Consensus 182 ~~~ 184 (232)
T 3opn_A 182 TFS 184 (232)
T ss_dssp EEC
T ss_pred EEc
Confidence 654
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-16 Score=118.61 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=86.7
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC---CcceEEEccccccCCCCCCCc-eeEEEe
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD---KLDKCYNVGIQDFKPEDLNIK-YDVIWI 156 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~i~~~~~~d~~~~~~~~~~~~-~D~V~~ 156 (256)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.++++....+. ++ .++.+|+.+..+....++ ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQA-EVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTE-EEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccce-EEEECCHHHHHHhhccCCCCCEEEE
Confidence 5689999999999999988788777999999999999999999887653 56 899999987654311138 999999
Q ss_pred chhhhccCHHHHHHHHHHH--hhhcCCCcEEEEEeccc
Q psy8370 157 QWVLMFILDEDIIKFLNLC--KQILNKNGIIIIKDNVA 192 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~--~~~LkpgG~l~i~~~~~ 192 (256)
+..++ . .....+++.+ .++|+|||.+++.....
T Consensus 132 ~~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 87744 3 3456788888 67899999999975443
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-16 Score=123.06 Aligned_cols=157 Identities=13% Similarity=0.198 Sum_probs=109.5
Q ss_pred hhHHHHHHHHhccCC-CCCCCeEEEEcCCC--CHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEc
Q psy8370 64 TSNQFLSSLYCQKKS-DPGKTRVLDVGAGI--GRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNV 137 (256)
Q Consensus 64 ~~~~~l~~~~~~~~~-~~~~~~vLDiG~G~--G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~ 137 (256)
..+.|+.+.+ +... .....+|||||||+ +.++..++++. ..+|+++|.|+.|++.+++++.... .++ .++++
T Consensus 61 ~nr~fl~rav-~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~-~~v~a 138 (277)
T 3giw_A 61 ANRDWMNRAV-AHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRT-AYVEA 138 (277)
T ss_dssp HHHHHHHHHH-HHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEE-EEEEC
T ss_pred HHHHHHHHHH-HHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcE-EEEEe
Confidence 4456776665 2222 23457999999997 44445554442 2399999999999999999886533 256 89999
Q ss_pred cccccCC----C--CCCCcee-----EEEechhhhccCHHH-HHHHHHHHhhhcCCCcEEEEEecccCCCCc-------c
Q psy8370 138 GIQDFKP----E--DLNIKYD-----VIWIQWVLMFILDED-IIKFLNLCKQILNKNGIIIIKDNVASGVKN-------E 198 (256)
Q Consensus 138 d~~~~~~----~--~~~~~~D-----~V~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------~ 198 (256)
|+.++.. . .. .|| .|+++.++||+++.+ ...+++++++.|+|||.|++++........ .
T Consensus 139 D~~~~~~~l~~~~~~~--~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~ 216 (277)
T 3giw_A 139 DMLDPASILDAPELRD--TLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVARE 216 (277)
T ss_dssp CTTCHHHHHTCHHHHT--TCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHH
T ss_pred cccChhhhhccccccc--ccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHH
Confidence 9988631 0 11 344 688999999998754 578999999999999999998765442211 0
Q ss_pred ccCC-CCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 199 YDDE-DSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 199 ~~~~-~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
+... .....++.+++..+|. ||++++
T Consensus 217 ~~~~g~p~~~rs~~ei~~~f~--Glelve 243 (277)
T 3giw_A 217 YAARNMPMRLRTHAEAEEFFE--GLELVE 243 (277)
T ss_dssp HHHTTCCCCCCCHHHHHHTTT--TSEECT
T ss_pred HHhcCCCCccCCHHHHHHHhC--CCcccC
Confidence 1111 1234579999999994 999775
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.5e-16 Score=127.12 Aligned_cols=110 Identities=21% Similarity=0.307 Sum_probs=92.4
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCcee
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
......++.+|||||||+|.++..++..+..+|+|+|+| .|++.++++....+ .++ .++.+|+.++... . +||
T Consensus 57 ~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~-~--~~D 131 (376)
T 3r0q_C 57 QNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIV-EVIEGSVEDISLP-E--KVD 131 (376)
T ss_dssp TTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTE-EEEESCGGGCCCS-S--CEE
T ss_pred hccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeE-EEEECchhhcCcC-C--cce
Confidence 445667889999999999999999998887799999999 99999999988765 346 8999999988765 4 799
Q ss_pred EEEechhhhccCH-HHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 153 VIWIQWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 153 ~V~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|++..+.+++.. ..+..+++.+.+.|+|||.+++..
T Consensus 132 ~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 132 VIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp EEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred EEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 9999776666543 446789999999999999998753
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-15 Score=112.64 Aligned_cols=106 Identities=21% Similarity=0.233 Sum_probs=88.3
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-C--cceEEEccccccCCCCCCCceeEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-K--LDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~--i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
...++.+|||+|||+|.++..++..+ .+++++|+++.+++.++++....+. + + .+...|+.+... .. +||+|
T Consensus 49 ~~~~~~~vLdiG~G~G~~~~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~-~~~~~d~~~~~~-~~--~~D~v 123 (194)
T 1dus_A 49 VVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDI-RVVHSDLYENVK-DR--KYNKI 123 (194)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCE-EEEECSTTTTCT-TS--CEEEE
T ss_pred ccCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHHHcCCCccce-EEEECchhcccc-cC--CceEE
Confidence 45578899999999999999998774 4999999999999999999876552 2 6 889999887543 33 79999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+++..+++. .+....+++++.++|+|||.+++..
T Consensus 124 ~~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~ 157 (194)
T 1dus_A 124 ITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp EECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCcccc-hhHHHHHHHHHHHHcCCCCEEEEEE
Confidence 998877652 2566789999999999999999974
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=122.73 Aligned_cols=151 Identities=17% Similarity=0.193 Sum_probs=103.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHh-----cCCCcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILK-----DCDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~-----~~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
.++.+|||||||+|.++..+++.. ..+|+++|+|+.+++.+++++.. ...++ .++.+|+.+.......++||+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v-~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRA-TVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTE-EEEESCHHHHHHSSCTTCEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcE-EEEECcHHHHHHhccCCceeE
Confidence 466899999999999999998663 34999999999999999998742 12467 899999987654201138999
Q ss_pred EEechhhhccCHHHH--HHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeee-
Q psy8370 154 IWIQWVLMFILDEDI--IKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKV- 230 (256)
Q Consensus 154 V~~~~~l~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~- 230 (256)
|++.......+...+ ..+++.++++|+|||.+++...... .......++.+.++++||..+.....
T Consensus 173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~-----------~~~~~~~~~~~~l~~~GF~~v~~~~~~ 241 (304)
T 3bwc_A 173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIW-----------LDLELIEKMSRFIRETGFASVQYALMH 241 (304)
T ss_dssp EEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTT-----------TCHHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcc-----------cchHHHHHHHHHHHhCCCCcEEEEEee
Confidence 999766554432222 5799999999999999998632110 01124577888999999987765432
Q ss_pred -cCCCCcceeeeE
Q psy8370 231 -TGMPKSLFKIYM 242 (256)
Q Consensus 231 -~~~~~~~~~~~~ 242 (256)
..+|...+...+
T Consensus 242 vP~yp~g~w~f~~ 254 (304)
T 3bwc_A 242 VPTYPCGSIGTLV 254 (304)
T ss_dssp CTTSTTSCCEEEE
T ss_pred cccccCcceEEEE
Confidence 333444444433
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=124.27 Aligned_cols=105 Identities=25% Similarity=0.280 Sum_probs=86.4
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...++.+|||||||+|.++..+++.+..+|+|+|+|+ +++.|++++...+ .++ .++.+|+.+++.+.+ +||+|+
T Consensus 61 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i-~~~~~d~~~~~~~~~--~~D~Iv 136 (340)
T 2fyt_A 61 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTI-TLIKGKIEEVHLPVE--KVDVII 136 (340)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTE-EEEESCTTTSCCSCS--CEEEEE
T ss_pred hhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcE-EEEEeeHHHhcCCCC--cEEEEE
Confidence 4567889999999999999999888766999999997 9999999887655 467 899999998765545 899999
Q ss_pred echhhhcc-CHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 156 IQWVLMFI-LDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 156 ~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
+..+.+.+ ....+..+++++.+.|||||.++
T Consensus 137 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 137 SEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp ECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 87642222 12456789999999999999998
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-15 Score=112.20 Aligned_cols=118 Identities=16% Similarity=0.197 Sum_probs=93.6
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC---CCCCCceeEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP---EDLNIKYDVI 154 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~---~~~~~~~D~V 154 (256)
...++.+|||+|||. +++|+|+.|++.++++... ++ .+..+|+.+++. .++ +||+|
T Consensus 9 g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~---~~-~~~~~d~~~~~~~~~~~~--~fD~V 67 (176)
T 2ld4_A 9 GISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN---EG-RVSVENIKQLLQSAHKES--SFDII 67 (176)
T ss_dssp TCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT---TS-EEEEEEGGGGGGGCCCSS--CEEEE
T ss_pred CCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc---Cc-EEEEechhcCccccCCCC--CEeEE
Confidence 467889999999996 2389999999999988643 36 899999998875 444 89999
Q ss_pred Eechhhhcc-CHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEE
Q psy8370 155 WIQWVLMFI-LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 225 (256)
Q Consensus 155 ~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~ 225 (256)
++..+++|+ ++ ...++++++++|||||.+++........ ....+.++.+++.++++++|| +.
T Consensus 68 ~~~~~l~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~------~~~~~~~~~~~~~~~l~~aGf-i~ 130 (176)
T 2ld4_A 68 LSGLVPGSTTLH--SAEILAEIARILRPGGCLFLKEPVETAV------DNNSKVKTASKLCSALTLSGL-VE 130 (176)
T ss_dssp EECCSTTCCCCC--CHHHHHHHHHHEEEEEEEEEEEEEESSS------CSSSSSCCHHHHHHHHHHTTC-EE
T ss_pred EECChhhhcccC--HHHHHHHHHHHCCCCEEEEEEccccccc------ccccccCCHHHHHHHHHHCCC-cE
Confidence 999999998 53 3589999999999999999964432211 113445688999999999999 55
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-15 Score=116.50 Aligned_cols=105 Identities=20% Similarity=0.156 Sum_probs=87.4
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEE
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
......++.+|||+|||+|.++..++..+ .+|+++|+++.+++.++++....+ ++ .+..+|+.+..+... +||+|
T Consensus 64 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~-~v-~~~~~d~~~~~~~~~--~fD~v 138 (231)
T 1vbf_A 64 DELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN-NI-KLILGDGTLGYEEEK--PYDRV 138 (231)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS-SE-EEEESCGGGCCGGGC--CEEEE
T ss_pred HhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC-Ce-EEEECCcccccccCC--CccEE
Confidence 33356778899999999999999998887 599999999999999999987655 67 899999887433334 79999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEeccc
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 192 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 192 (256)
++..++++++. ++.++|+|||.+++.....
T Consensus 139 ~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 139 VVWATAPTLLC--------KPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp EESSBBSSCCH--------HHHHTEEEEEEEEEEECSS
T ss_pred EECCcHHHHHH--------HHHHHcCCCcEEEEEEcCC
Confidence 99999998852 5788999999999986443
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-16 Score=120.59 Aligned_cols=132 Identities=14% Similarity=0.117 Sum_probs=80.0
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC--CCCCceeEEEe
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIWI 156 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~--~~~~~~D~V~~ 156 (256)
.++.+|||+|||+|.++..++..+.. +++|+|+|+.+++.+++++...+.++ .+.++|+.+.... ...++||+|++
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~fD~i~~ 107 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVV-DWAAADGIEWLIERAERGRPWHAIVS 107 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCce-EEEEcchHhhhhhhhhccCcccEEEE
Confidence 67889999999999999999888543 89999999999999999887654456 7888888773322 00137999999
Q ss_pred chh------hhccCHHH------------------HHHHHHHHhhhcCCCcE-EEEEecccCCCCccccCCCCceeeCHH
Q psy8370 157 QWV------LMFILDED------------------IIKFLNLCKQILNKNGI-IIIKDNVASGVKNEYDDEDSSVVRSLP 211 (256)
Q Consensus 157 ~~~------l~~~~~~~------------------~~~~l~~~~~~LkpgG~-l~i~~~~~~~~~~~~~~~~~~~~~~~~ 211 (256)
+.. +++++... ...+++++.++|+|||. +++.. . ....+
T Consensus 108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~---------------~~~~~ 171 (215)
T 4dzr_A 108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV-G---------------HNQAD 171 (215)
T ss_dssp CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC-T---------------TSCHH
T ss_pred CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE-C---------------CccHH
Confidence 632 22222211 16789999999999999 55431 1 12357
Q ss_pred HHHHHHH--hcCCcEEEee
Q psy8370 212 QFCLLFS--KANLKCVKSE 228 (256)
Q Consensus 212 ~~~~~l~--~~gf~~~~~~ 228 (256)
++.+++. +.||..+...
T Consensus 172 ~~~~~l~~~~~gf~~~~~~ 190 (215)
T 4dzr_A 172 EVARLFAPWRERGFRVRKV 190 (215)
T ss_dssp HHHHHTGGGGGGTEECCEE
T ss_pred HHHHHHHHhhcCCceEEEE
Confidence 7888999 8999776544
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.1e-16 Score=126.33 Aligned_cols=105 Identities=19% Similarity=0.219 Sum_probs=87.2
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
..++.+|||||||+|.++..++..+..+|+|+|+|+ +++.|+++....+ .++ .++.+|+.+++.+.+ +||+|++
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~~~--~fD~Iis 139 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVV-TIIKGKVEEVELPVE--KVDIIIS 139 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTE-EEEESCTTTCCCSSS--CEEEEEE
T ss_pred cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcE-EEEECcHHHccCCCC--ceEEEEE
Confidence 457889999999999999999888777999999995 9999999988665 347 999999998866545 8999999
Q ss_pred chhhhcc-CHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 157 QWVLMFI-LDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 157 ~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
..+.+++ ..+....+++.+.++|||||.++.
T Consensus 140 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 140 EWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp CCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 7654443 224566899999999999999874
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-14 Score=112.11 Aligned_cols=146 Identities=13% Similarity=0.003 Sum_probs=101.3
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHh-cC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC---CCCCCCce
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK---PEDLNIKY 151 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~---~~~~~~~~ 151 (256)
....++.+|||+|||+|.++..++.. +. .+|+++|+|+.+++.++++.... .++ .+..+|+.+.. .... +|
T Consensus 69 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-~~v-~~~~~d~~~~~~~~~~~~--~~ 144 (227)
T 1g8a_A 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-RNI-VPILGDATKPEEYRALVP--KV 144 (227)
T ss_dssp CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-TTE-EEEECCTTCGGGGTTTCC--CE
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-CCC-EEEEccCCCcchhhcccC--Cc
Confidence 34667889999999999999999876 32 48999999999999998887654 467 88999988742 1223 79
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeec
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVT 231 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~ 231 (256)
|+|++... .+.....+++++.+.|+|||.+++......... .........+++..+ .++ |++++.....
T Consensus 145 D~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----~~~~~~~~~~~l~~l-~~~-f~~~~~~~~~ 213 (227)
T 1g8a_A 145 DVIFEDVA----QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDV-----TKEPEQVFREVEREL-SEY-FEVIERLNLE 213 (227)
T ss_dssp EEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCT-----TSCHHHHHHHHHHHH-HTT-SEEEEEEECT
T ss_pred eEEEECCC----CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCC-----CCChhhhhHHHHHHH-Hhh-ceeeeEeccC
Confidence 99998654 223334569999999999999999722111110 011112345666666 667 9998766544
Q ss_pred CCCCcc
Q psy8370 232 GMPKSL 237 (256)
Q Consensus 232 ~~~~~~ 237 (256)
.+....
T Consensus 214 ~~~~~~ 219 (227)
T 1g8a_A 214 PYEKDH 219 (227)
T ss_dssp TTSSSE
T ss_pred cccCCC
Confidence 444333
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=123.95 Aligned_cols=106 Identities=20% Similarity=0.250 Sum_probs=89.1
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...++.+|||||||+|.++..+++.+..+|+|+|+|+ +++.++++....+ .++ .++.+|+.+.+.. + +||+|+
T Consensus 47 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v-~~~~~d~~~~~~~-~--~~D~Iv 121 (348)
T 2y1w_A 47 TDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRI-VVIPGKVEEVSLP-E--QVDIII 121 (348)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTE-EEEESCTTTCCCS-S--CEEEEE
T ss_pred ccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcE-EEEEcchhhCCCC-C--ceeEEE
Confidence 4567889999999999999999888767999999996 8899999887655 457 8999999887543 3 799999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+..+++++..+.....+.++++.|+|||.+++.
T Consensus 122 s~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 122 SEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp ECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred EeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 998888876555667888999999999999864
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.5e-15 Score=113.04 Aligned_cols=120 Identities=13% Similarity=0.160 Sum_probs=93.4
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEEEech
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
++.+|||+|||+|..+..++... ..+++++|+|+.+++.++++....+. ++ .+..+|+.+..+ .. +||+|++..
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~-~~--~~D~i~~~~ 140 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENI-EPVQSRVEEFPS-EP--PFDGVISRA 140 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSE-EEEECCTTTSCC-CS--CEEEEECSC
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCe-EEEecchhhCCc-cC--CcCEEEEec
Confidence 46899999999999999998763 33999999999999999999887653 46 899999988763 23 799999864
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
+ .....+++.+.+.|+|||.+++.... ...+++..++. ||+++...
T Consensus 141 ~------~~~~~~l~~~~~~L~~gG~l~~~~~~----------------~~~~~~~~~~~--g~~~~~~~ 186 (207)
T 1jsx_A 141 F------ASLNDMVSWCHHLPGEQGRFYALKGQ----------------MPEDEIALLPE--EYQVESVV 186 (207)
T ss_dssp S------SSHHHHHHHHTTSEEEEEEEEEEESS----------------CCHHHHHTSCT--TEEEEEEE
T ss_pred c------CCHHHHHHHHHHhcCCCcEEEEEeCC----------------CchHHHHHHhc--CCceeeee
Confidence 3 23458999999999999999986311 23455555554 89887654
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=120.23 Aligned_cols=105 Identities=17% Similarity=0.259 Sum_probs=83.4
Q ss_pred CCCeEEEEcCCCCH----hHHHHHHh-c----CCeEEEEeCCHHHHHHHHHHHHh-----------------------cC
Q psy8370 81 GKTRVLDVGAGIGR----ISKYLLAK-H----FDKIDLLEQSSKFIEQAKEEILK-----------------------DC 128 (256)
Q Consensus 81 ~~~~vLDiG~G~G~----~~~~l~~~-~----~~~v~~vD~s~~~~~~a~~~~~~-----------------------~~ 128 (256)
++.+|+|+|||+|. ++..+++. + ..+|+|+|+|+.|++.|++.... .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 55555554 2 12899999999999999986310 00
Q ss_pred ---------CCcceEEEccccccCCC-CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 129 ---------DKLDKCYNVGIQDFKPE-DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 129 ---------~~i~~~~~~d~~~~~~~-~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.++ .|...|+.+.+.. .+ .||+|+|.++++|++++...++++++++.|+|||.|++.
T Consensus 185 ~~~v~~~lr~~V-~F~~~dl~~~~~~~~~--~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYV-EFSSVNLLEKQYNVPG--PFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTE-EEEECCTTCSSCCCCC--CEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccC-eEEecccCCCCCCcCC--CeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 246 8889998875333 23 799999999999998888889999999999999999985
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-15 Score=123.56 Aligned_cols=107 Identities=18% Similarity=0.177 Sum_probs=89.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..++.+|||+|||+|.++..++..+.. +|+++|+|+.+++.++++....+... .+...|+.+.. .. +||+|+++
T Consensus 194 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~-~~~~~d~~~~~--~~--~fD~Iv~~ 268 (343)
T 2pjd_A 194 PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG-EVFASNVFSEV--KG--RFDMIISN 268 (343)
T ss_dssp TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCC-EEEECSTTTTC--CS--CEEEEEEC
T ss_pred cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCC-EEEEccccccc--cC--CeeEEEEC
Confidence 345679999999999999999888754 89999999999999999998766555 77888887643 33 79999999
Q ss_pred hhhhcc---CHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 158 WVLMFI---LDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 158 ~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
..+|+. ..+....+++++.++|+|||.+++..+
T Consensus 269 ~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 269 PPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp CCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred CCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 888752 235677899999999999999999753
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=124.17 Aligned_cols=138 Identities=21% Similarity=0.316 Sum_probs=106.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.+..+|||||||+|.++..+++.... +++++|+ +.+++.+++. .++ .+..+|+.+ +. . .||+|++..
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v-~~~~~d~~~-~~--~--~~D~v~~~~ 259 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGN-----ENL-NFVGGDMFK-SI--P--SADAVLLKW 259 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCC-----SSE-EEEECCTTT-CC--C--CCSEEEEES
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccC-----CCc-EEEeCccCC-CC--C--CceEEEEcc
Confidence 45689999999999999999887643 8999999 7888776541 246 889999876 32 2 499999999
Q ss_pred hhhccCHHHHHHHHHHHhhhcCC---CcEEEEEecccCCCCcc---------cc----CCCCceeeCHHHHHHHHHhcCC
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNK---NGIIIIKDNVASGVKNE---------YD----DEDSSVVRSLPQFCLLFSKANL 222 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~~l~~~gf 222 (256)
++|+++++...+++++++++|+| ||.+++.+......... .+ .......++.++|.++++++||
T Consensus 260 vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 339 (358)
T 1zg3_A 260 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGF 339 (358)
T ss_dssp CGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTC
T ss_pred cccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCC
Confidence 99999887778999999999999 99999987654432110 00 0011234689999999999999
Q ss_pred cEEEeee
Q psy8370 223 KCVKSEK 229 (256)
Q Consensus 223 ~~~~~~~ 229 (256)
++++...
T Consensus 340 ~~~~~~~ 346 (358)
T 1zg3_A 340 SSYKITP 346 (358)
T ss_dssp CEEEEEE
T ss_pred CeeEEEe
Confidence 9988764
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-15 Score=110.54 Aligned_cols=108 Identities=14% Similarity=0.213 Sum_probs=84.4
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCC-CCCCCceeEEE
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKP-EDLNIKYDVIW 155 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~-~~~~~~~D~V~ 155 (256)
..++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.+++++...+ .++ .++.+|+.+..+ ... .||+|+
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~--~fD~i~ 105 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRF-TLLKMEAERAIDCLTG--RFDLVF 105 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGE-EEECSCHHHHHHHBCS--CEEEEE
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCce-EEEECcHHHhHHhhcC--CCCEEE
Confidence 45678999999999999999988865699999999999999999987654 246 889999887432 233 699999
Q ss_pred echhhhccCHHHHHHHHHHHh--hhcCCCcEEEEEeccc
Q psy8370 156 IQWVLMFILDEDIIKFLNLCK--QILNKNGIIIIKDNVA 192 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~~ 192 (256)
++..++. ......++.+. ++|+|||.+++.....
T Consensus 106 ~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 106 LDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp ECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred ECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 9865432 23345666665 9999999999975433
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.6e-15 Score=115.16 Aligned_cols=137 Identities=13% Similarity=0.192 Sum_probs=98.7
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHh---cC--CCcceEEEccccccC-------C
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILK---DC--DKLDKCYNVGIQDFK-------P 144 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~---~~--~~i~~~~~~d~~~~~-------~ 144 (256)
...++.+|||+|||+|.++..++.+.. .+|+++|+++.+++.+++++.. .+ .++ .++.+|+.+.. .
T Consensus 33 ~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v-~~~~~D~~~~~~~~~~~~~ 111 (260)
T 2ozv_A 33 ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARI-EVLEADVTLRAKARVEAGL 111 (260)
T ss_dssp CCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGE-EEEECCTTCCHHHHHHTTC
T ss_pred cccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceE-EEEeCCHHHHhhhhhhhcc
Confidence 455678999999999999999988864 3899999999999999999876 44 246 89999998772 1
Q ss_pred CCCCCceeEEEechhhh----------------ccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceee
Q psy8370 145 EDLNIKYDVIWIQWVLM----------------FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVR 208 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~----------------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 208 (256)
... +||+|+++--+. +........+++.+.++|+|||.+++.... .
T Consensus 112 ~~~--~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----------------~ 173 (260)
T 2ozv_A 112 PDE--HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP----------------Q 173 (260)
T ss_dssp CTT--CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG----------------G
T ss_pred CCC--CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH----------------H
Confidence 233 799999972211 111123568999999999999999985211 1
Q ss_pred CHHHHHHHHHhcCCcEEEeeeecCCC
Q psy8370 209 SLPQFCLLFSKANLKCVKSEKVTGMP 234 (256)
Q Consensus 209 ~~~~~~~~l~~~gf~~~~~~~~~~~~ 234 (256)
...++...+.+. |...........+
T Consensus 174 ~~~~~~~~l~~~-~~~~~i~~v~~~~ 198 (260)
T 2ozv_A 174 SVAEIIAACGSR-FGGLEITLIHPRP 198 (260)
T ss_dssp GHHHHHHHHTTT-EEEEEEEEEESST
T ss_pred HHHHHHHHHHhc-CCceEEEEEcCCC
Confidence 235677777764 7766655444333
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.4e-15 Score=112.21 Aligned_cols=104 Identities=15% Similarity=0.040 Sum_probs=85.6
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCcee
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
.....++.+|||||||+|.++..++..+. .+|+++|+++.+++.+++++...+ .++ .+...|+....+... +||
T Consensus 72 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~--~fD 148 (215)
T 2yxe_A 72 LLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNV-IVIVGDGTLGYEPLA--PYD 148 (215)
T ss_dssp HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTE-EEEESCGGGCCGGGC--CEE
T ss_pred hhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCe-EEEECCcccCCCCCC--Cee
Confidence 33567788999999999999999988763 489999999999999999987654 346 888899865443334 799
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
+|++..++++++ +++.+.|+|||.+++...
T Consensus 149 ~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 149 RIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp EEEESSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred EEEECCchHHHH--------HHHHHHcCCCcEEEEEEC
Confidence 999999999885 368899999999999753
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.4e-15 Score=114.18 Aligned_cols=119 Identities=18% Similarity=0.274 Sum_probs=89.8
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCC---CcceEEEcccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCD---KLDKCYNVGIQ 140 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~---~i~~~~~~d~~ 140 (256)
.+++..+. ......++.+|||||||+|..+..++... ..+|+++|+++.+++.|++++...+. ++ .++.+|+.
T Consensus 42 ~~~l~~l~-~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i-~~~~gda~ 119 (221)
T 3dr5_A 42 GQLLTTLA-ATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRV-RFLLSRPL 119 (221)
T ss_dssp HHHHHHHH-HHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGE-EEECSCHH
T ss_pred HHHHHHHH-HhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcE-EEEEcCHH
Confidence 35555555 33333445699999999999999998753 23899999999999999999987652 47 89999987
Q ss_pred ccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 141 DFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 141 ~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
+..+....++||+|++..... ....+++.+.++|+|||.+++.+..
T Consensus 120 ~~l~~~~~~~fD~V~~d~~~~-----~~~~~l~~~~~~LkpGG~lv~dn~~ 165 (221)
T 3dr5_A 120 DVMSRLANDSYQLVFGQVSPM-----DLKALVDAAWPLLRRGGALVLADAL 165 (221)
T ss_dssp HHGGGSCTTCEEEEEECCCTT-----THHHHHHHHHHHEEEEEEEEETTTT
T ss_pred HHHHHhcCCCcCeEEEcCcHH-----HHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 765432113899999875433 3356899999999999999985443
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.9e-15 Score=119.73 Aligned_cols=107 Identities=21% Similarity=0.125 Sum_probs=88.7
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCce
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
......++.+|||||||+|.++..++..+. .+|+++|+|+.+++.+++++...+ .++ .+..+|+.+..+..+ +|
T Consensus 69 ~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v-~~~~~d~~~~~~~~~--~f 145 (317)
T 1dl5_A 69 EWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENV-IFVCGDGYYGVPEFS--PY 145 (317)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSE-EEEESCGGGCCGGGC--CE
T ss_pred HhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCe-EEEECChhhccccCC--Ce
Confidence 333567889999999999999999988765 259999999999999999988765 346 899999988655444 79
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEeccc
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 192 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 192 (256)
|+|++..++++++ +.+.+.|||||.+++.....
T Consensus 146 D~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~~ 178 (317)
T 1dl5_A 146 DVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINLK 178 (317)
T ss_dssp EEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCBG
T ss_pred EEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECCC
Confidence 9999999999985 35788999999999975443
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.4e-15 Score=110.67 Aligned_cols=106 Identities=17% Similarity=0.229 Sum_probs=83.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCC----CCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPE----DLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~----~~~~~~D~ 153 (256)
.++.+|||+|||+|.++..++..+..+|+++|+++.+++.++++....+ .++ .++.+|+.+.... .. +||+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~--~fD~ 119 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKF-EVRKMDANRALEQFYEEKL--QFDL 119 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGE-EEEESCHHHHHHHHHHTTC--CEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcce-EEEECcHHHHHHHHHhcCC--CCCE
Confidence 5678999999999999998887776699999999999999999987654 256 8999998775321 33 7999
Q ss_pred EEechhhhccCHHHHHHHHHHH--hhhcCCCcEEEEEecc
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLC--KQILNKNGIIIIKDNV 191 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~--~~~LkpgG~l~i~~~~ 191 (256)
|+++..++... ....++.+ .++|+|||.+++....
T Consensus 120 i~~~~~~~~~~---~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 120 VLLDPPYAKQE---IVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp EEECCCGGGCC---HHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred EEECCCCCchh---HHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 99987754332 23455555 8899999999987433
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.60 E-value=8e-15 Score=115.01 Aligned_cols=121 Identities=12% Similarity=0.109 Sum_probs=89.7
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHh--c-CCeEEEEeCCHHHHHHHHHHHHhc---CC--C--------
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK--H-FDKIDLLEQSSKFIEQAKEEILKD---CD--K-------- 130 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--~-~~~v~~vD~s~~~~~~a~~~~~~~---~~--~-------- 130 (256)
.++..++ ......++.+|||+|||+|.++..++.. . ..+|+|+|+|+.+++.|+++.... +. +
T Consensus 38 ~l~~~~l-~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~ 116 (250)
T 1o9g_A 38 EIFQRAL-ARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQS 116 (250)
T ss_dssp HHHHHHH-HTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhh
Confidence 4555555 3333346789999999999999999876 2 238999999999999999877643 21 1
Q ss_pred -----------------cce-------------EEEccccccCC-----CCCCCceeEEEechhhhccC-------HHHH
Q psy8370 131 -----------------LDK-------------CYNVGIQDFKP-----EDLNIKYDVIWIQWVLMFIL-------DEDI 168 (256)
Q Consensus 131 -----------------i~~-------------~~~~d~~~~~~-----~~~~~~~D~V~~~~~l~~~~-------~~~~ 168 (256)
+ . +..+|+.+... ... +||+|+++..+.+.. .+..
T Consensus 117 ~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~fD~Iv~npp~~~~~~~~~~~~~~~~ 193 (250)
T 1o9g_A 117 ERFGKPSYLEAAQAARRL-RERLTAEGGALPCAIRTADVFDPRALSAVLAGS--APDVVLTDLPYGERTHWEGQVPGQPV 193 (250)
T ss_dssp HHHCCHHHHHHHHHHHHH-HHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTC--CCSEEEEECCGGGSSSSSSCCCHHHH
T ss_pred hhcccccchhhhhhhhhh-hhhccccccccccceeecccccccccccccCCC--CceEEEeCCCeeccccccccccccHH
Confidence 4 5 88999877542 222 799999986554432 2556
Q ss_pred HHHHHHHhhhcCCCcEEEEEecc
Q psy8370 169 IKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 169 ~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
..++++++++|+|||.++++...
T Consensus 194 ~~~l~~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 194 AGLLRSLASALPAHAVIAVTDRS 216 (250)
T ss_dssp HHHHHHHHHHSCTTCEEEEEESS
T ss_pred HHHHHHHHHhcCCCcEEEEeCcc
Confidence 78999999999999999996443
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-15 Score=131.99 Aligned_cols=109 Identities=16% Similarity=0.016 Sum_probs=87.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
..+.+|||||||.|.++..|++.|+ +|+|+|.++.+++.|+......+ .++ .+.+++++++......++||+|+|..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAA-EFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEE-EEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCce-EEEECCHHHHhhhccCCCccEEEECc
Confidence 4568999999999999999999998 89999999999999999887655 467 89999998874321123899999999
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
+++|++++.....+..+.+.|+++|..++...
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~ 174 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILEL 174 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEEC
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEe
Confidence 99999765433445567777888887766543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-14 Score=109.16 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=87.7
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQD 141 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~ 141 (256)
.+++..+. ...++.+|||||||+|..+..++... ..+|+++|+++.+++.+++++...+ .++ .++.+|+.+
T Consensus 47 ~~~l~~l~----~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~ 121 (221)
T 3u81_A 47 GQIMDAVI----REYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKV-TILNGASQD 121 (221)
T ss_dssp HHHHHHHH----HHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGE-EEEESCHHH
T ss_pred HHHHHHHH----HhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCce-EEEECCHHH
Confidence 34555554 23467899999999999999998742 2389999999999999999988765 347 899999866
Q ss_pred cCCCCC----CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 142 FKPEDL----NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 142 ~~~~~~----~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
..+... .++||+|++....++. .....+++.+ ++|+|||.+++.+
T Consensus 122 ~l~~~~~~~~~~~fD~V~~d~~~~~~--~~~~~~~~~~-~~LkpgG~lv~~~ 170 (221)
T 3u81_A 122 LIPQLKKKYDVDTLDMVFLDHWKDRY--LPDTLLLEKC-GLLRKGTVLLADN 170 (221)
T ss_dssp HGGGTTTTSCCCCCSEEEECSCGGGH--HHHHHHHHHT-TCCCTTCEEEESC
T ss_pred HHHHHHHhcCCCceEEEEEcCCcccc--hHHHHHHHhc-cccCCCeEEEEeC
Confidence 432211 1379999998776666 3444677777 9999999999853
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-15 Score=112.49 Aligned_cols=106 Identities=15% Similarity=0.173 Sum_probs=83.7
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
++.+|||+|||+|.++..++.++..+|+++|+|+.+++.++++....+ .++ .++++|+.+..+... ++||+|++...
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~D~~~~~~~~~-~~fD~V~~~~p 131 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNA-RVVNSNAMSFLAQKG-TPHNIVFVDPP 131 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSE-EEECSCHHHHHSSCC-CCEEEEEECCS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcE-EEEECCHHHHHhhcC-CCCCEEEECCC
Confidence 568999999999999999878887799999999999999999988765 367 899999887533222 37999999866
Q ss_pred hhccCHHHHHHHHHHHhh--hcCCCcEEEEEecc
Q psy8370 160 LMFILDEDIIKFLNLCKQ--ILNKNGIIIIKDNV 191 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~--~LkpgG~l~i~~~~ 191 (256)
++ . .....+++.+.+ +|+|||.+++....
T Consensus 132 ~~-~--~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 132 FR-R--GLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp SS-T--TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CC-C--CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 44 2 233467777755 59999999987543
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-15 Score=122.27 Aligned_cols=105 Identities=26% Similarity=0.306 Sum_probs=85.9
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
..++.+|||||||+|.++..+++.+..+|+|+|+| .+++.++++....+ .++ .++.+|+.+.+.+.. +||+|++
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i-~~~~~d~~~~~~~~~--~~D~Ivs 111 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKI-TLLRGKLEDVHLPFP--KVDIIIS 111 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTE-EEEESCTTTSCCSSS--CEEEEEE
T ss_pred hcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCE-EEEECchhhccCCCC--cccEEEE
Confidence 35678999999999999999988877799999999 59999999987655 356 899999988765544 7999999
Q ss_pred chhhhccC-HHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 157 QWVLMFIL-DEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 157 ~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
..+.+.+. ...+..++..+.+.|+|||.++.
T Consensus 112 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 112 EWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 86544442 24456899999999999999974
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=120.70 Aligned_cols=120 Identities=20% Similarity=0.095 Sum_probs=88.5
Q ss_pred HHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHH-------HHHHHhcC---CCcceEEE
Q psy8370 68 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQA-------KEEILKDC---DKLDKCYN 136 (256)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a-------~~~~~~~~---~~i~~~~~ 136 (256)
++..++ ......++.+|||||||+|.++..++.. +..+|+|+|+++.+++.| ++++...+ .++ .++.
T Consensus 230 ~v~~ml-~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV-~~i~ 307 (433)
T 1u2z_A 230 FLSDVY-QQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV-EFSL 307 (433)
T ss_dssp HHHHHH-HHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE-EEEE
T ss_pred HHHHHH-HhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCce-EEEE
Confidence 344444 3445678899999999999999999876 444899999999999988 77776655 356 7777
Q ss_pred cccc-cc-CC--CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCC
Q psy8370 137 VGIQ-DF-KP--EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 194 (256)
Q Consensus 137 ~d~~-~~-~~--~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 194 (256)
+|.. .. .. ... +||+|+++.++ +. ++....++++.+.|||||.+++.+...+.
T Consensus 308 gD~~~~~~~~~~~~~--~FDvIvvn~~l-~~--~d~~~~L~el~r~LKpGG~lVi~d~f~p~ 364 (433)
T 1u2z_A 308 KKSFVDNNRVAELIP--QCDVILVNNFL-FD--EDLNKKVEKILQTAKVGCKIISLKSLRSL 364 (433)
T ss_dssp SSCSTTCHHHHHHGG--GCSEEEECCTT-CC--HHHHHHHHHHHTTCCTTCEEEESSCSSCT
T ss_pred cCccccccccccccC--CCCEEEEeCcc-cc--ccHHHHHHHHHHhCCCCeEEEEeeccCCc
Confidence 6433 21 11 123 79999987665 33 45667899999999999999997654443
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=120.22 Aligned_cols=108 Identities=14% Similarity=0.210 Sum_probs=85.4
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC----CcceEEEccccccCCCCCCCcee
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCD----KLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~----~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
...++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.++++....+. ++ .+...|+.+..+ .. +||
T Consensus 219 ~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v-~~~~~D~~~~~~-~~--~fD 294 (375)
T 4dcm_A 219 PENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRC-EFMINNALSGVE-PF--RFN 294 (375)
T ss_dssp CCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGE-EEEECSTTTTCC-TT--CEE
T ss_pred cccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceE-EEEechhhccCC-CC--Cee
Confidence 45556899999999999999998886 34999999999999999999886541 35 778999887432 23 799
Q ss_pred EEEechhhhc---cCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 153 VIWIQWVLMF---ILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 153 ~V~~~~~l~~---~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+++..+++ +.......+++++.++|+|||.++++.
T Consensus 295 ~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 295 AVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp EEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 9999877764 323344578999999999999999974
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.3e-15 Score=114.48 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=88.7
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEcccccc
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDF 142 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~ 142 (256)
+++..+. ...++.+|||||||+|..+..++... ..+|+++|+++.+++.+++++...+ .++ .+..+|+.+.
T Consensus 53 ~~l~~l~----~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v-~~~~~d~~~~ 127 (248)
T 3tfw_A 53 QFLALLV----RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRV-TLREGPALQS 127 (248)
T ss_dssp HHHHHHH----HHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTE-EEEESCHHHH
T ss_pred HHHHHHH----hhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-EEEEcCHHHH
Confidence 4555554 23467899999999999999998763 2399999999999999999998765 357 8999998774
Q ss_pred CCC-CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEeccc
Q psy8370 143 KPE-DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 192 (256)
Q Consensus 143 ~~~-~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 192 (256)
.+. ...++||+|++.... .....+++.+.++|+|||.+++.+...
T Consensus 128 l~~~~~~~~fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 128 LESLGECPAFDLIFIDADK-----PNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp HHTCCSCCCCSEEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred HHhcCCCCCeEEEEECCch-----HHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 332 112379999986532 334579999999999999999865443
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.6e-15 Score=115.08 Aligned_cols=114 Identities=17% Similarity=0.267 Sum_probs=88.3
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEcccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDF 142 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~ 142 (256)
.+++..+. ...++.+|||||||+|..+..++... ..+|+++|+++.+++.+++++...+ .++ .++.+|+.+.
T Consensus 60 ~~~l~~~~----~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~ 134 (232)
T 3ntv_A 60 LDLIKQLI----RMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQV-RIIEGNALEQ 134 (232)
T ss_dssp HHHHHHHH----HHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTE-EEEESCGGGC
T ss_pred HHHHHHHH----hhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-EEEECCHHHH
Confidence 34455544 23467899999999999999998743 2399999999999999999998765 367 9999999876
Q ss_pred CC-CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 143 KP-EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 143 ~~-~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+ ... ++||+|++..... ....+++.+.+.|+|||.+++.+.
T Consensus 135 ~~~~~~-~~fD~V~~~~~~~-----~~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 135 FENVND-KVYDMIFIDAAKA-----QSKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp HHHHTT-SCEEEEEEETTSS-----SHHHHHHHHGGGEEEEEEEEEECT
T ss_pred HHhhcc-CCccEEEEcCcHH-----HHHHHHHHHHHhcCCCeEEEEeeC
Confidence 43 211 3799999875433 345799999999999999988543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-15 Score=118.46 Aligned_cols=129 Identities=16% Similarity=0.239 Sum_probs=99.2
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHh-c-CCeEEEEeCCHHHHHHHHHHHHhc-C-CCcceEEEccccccCCCCCCCc
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAK-H-FDKIDLLEQSSKFIEQAKEEILKD-C-DKLDKCYNVGIQDFKPEDLNIK 150 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~-~-~~i~~~~~~d~~~~~~~~~~~~ 150 (256)
......++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++++... + .++ .+..+|+.+.. ... +
T Consensus 104 ~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v-~~~~~d~~~~~-~~~--~ 179 (275)
T 1yb2_A 104 MRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNV-RTSRSDIADFI-SDQ--M 179 (275)
T ss_dssp --CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTE-EEECSCTTTCC-CSC--C
T ss_pred HHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcE-EEEECchhccC-cCC--C
Confidence 3345677899999999999999999876 2 249999999999999999998766 4 356 88999998733 233 7
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
||+|++. .+ +...+++++.+.|+|||.+++..... ...+++.+.++++||..++...
T Consensus 180 fD~Vi~~-----~~--~~~~~l~~~~~~LkpgG~l~i~~~~~---------------~~~~~~~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 180 YDAVIAD-----IP--DPWNHVQKIASMMKPGSVATFYLPNF---------------DQSEKTVLSLSASGMHHLETVE 236 (275)
T ss_dssp EEEEEEC-----CS--CGGGSHHHHHHTEEEEEEEEEEESSH---------------HHHHHHHHHSGGGTEEEEEEEE
T ss_pred ccEEEEc-----Cc--CHHHHHHHHHHHcCCCCEEEEEeCCH---------------HHHHHHHHHHHHCCCeEEEEEE
Confidence 9999982 32 22478999999999999999974221 1235677788889998876554
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.3e-15 Score=125.07 Aligned_cols=106 Identities=20% Similarity=0.250 Sum_probs=88.6
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...++.+|||||||+|.++..++..+..+|+|+|+|+ +++.|+++....+ .++ .++.+|+.++... + +||+|+
T Consensus 155 ~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v-~~~~~d~~~~~~~-~--~fD~Iv 229 (480)
T 3b3j_A 155 TDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRI-VVIPGKVEEVSLP-E--QVDIII 229 (480)
T ss_dssp GGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTE-EEEESCTTTCCCS-S--CEEEEE
T ss_pred hhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcE-EEEECchhhCccC-C--CeEEEE
Confidence 4456789999999999999999887666999999998 9999999887665 457 9999999886543 3 799999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+..+++++..+.....+..+++.|+|||.+++.
T Consensus 230 s~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 230 SEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp CCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred EeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 998878776566667888999999999999863
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-14 Score=113.68 Aligned_cols=128 Identities=13% Similarity=0.166 Sum_probs=99.7
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHh-c-CCeEEEEeCCHHHHHHHHHHHHhc-C-CCcceEEEccccccCCCCCCCcee
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAK-H-FDKIDLLEQSSKFIEQAKEEILKD-C-DKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~-~-~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
....++.+|||+|||+|.++..++.. + ..+++++|+++.+++.+++++... + .++ .+...|+.+.+.... +||
T Consensus 92 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v-~~~~~d~~~~~~~~~--~~D 168 (258)
T 2pwy_A 92 LDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENV-RFHLGKLEEAELEEA--AYD 168 (258)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCE-EEEESCGGGCCCCTT--CEE
T ss_pred cCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCE-EEEECchhhcCCCCC--CcC
Confidence 35678899999999999999999887 3 349999999999999999998765 4 456 889999988744444 799
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
+|++. .+ +...+++++.++|+|||.+++..... ....++.+.++++||..++...
T Consensus 169 ~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~~---------------~~~~~~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 169 GVALD-----LM--EPWKVLEKAALALKPDRFLVAYLPNI---------------TQVLELVRAAEAHPFRLERVLE 223 (258)
T ss_dssp EEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEESCH---------------HHHHHHHHHHTTTTEEEEEEEE
T ss_pred EEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeCCH---------------HHHHHHHHHHHHCCCceEEEEE
Confidence 99984 22 22378999999999999999974221 1235667778889998775543
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.6e-15 Score=121.87 Aligned_cols=104 Identities=21% Similarity=0.314 Sum_probs=84.9
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
..++++|||||||+|.++..+++.|+.+|++||.|+ +++.|++..+..+ .++ .++.++++++..++ ++|+|++
T Consensus 81 ~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i-~~i~~~~~~~~lpe---~~Dvivs 155 (376)
T 4hc4_A 81 ALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRV-HVLPGPVETVELPE---QVDAIVS 155 (376)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTE-EEEESCTTTCCCSS---CEEEEEC
T ss_pred hcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceE-EEEeeeeeeecCCc---cccEEEe
Confidence 346789999999999999998888988999999986 8899999887765 457 99999999887653 6999999
Q ss_pred chhhhccCH-HHHHHHHHHHhhhcCCCcEEEE
Q psy8370 157 QWVLMFILD-EDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 157 ~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i 187 (256)
..+-..+.. ..+..++....+.|+|||.++-
T Consensus 156 E~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 156 EWMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp CCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ecccccccccchhhhHHHHHHhhCCCCceECC
Confidence 655444422 3567788888999999998874
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.58 E-value=7.3e-15 Score=108.31 Aligned_cols=106 Identities=15% Similarity=0.236 Sum_probs=81.7
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC--CCCCceeEEEech
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIWIQW 158 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~--~~~~~~D~V~~~~ 158 (256)
++.+|||+|||+|.++..++..+. .++|+|+|+.+++.++++....+.++ .++.+|+.+..+. ...++||+|+++.
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGA-RVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCC-EEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCCce-EEEeccHHHHHHhhhccCCceEEEEECC
Confidence 678999999999999999988877 59999999999999999988665466 8999998774321 1012699999987
Q ss_pred hhhccCHHHHHHHHHHHh--hhcCCCcEEEEEeccc
Q psy8370 159 VLMFILDEDIIKFLNLCK--QILNKNGIIIIKDNVA 192 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~~ 192 (256)
.++... + ..++.+. ++|+|||.+++.....
T Consensus 119 ~~~~~~-~---~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 119 PYAMDL-A---ALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CTTSCT-T---HHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCchhH-H---HHHHHHHhhcccCCCcEEEEEeCCc
Confidence 665111 2 3445555 9999999999975443
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-14 Score=116.79 Aligned_cols=144 Identities=16% Similarity=0.147 Sum_probs=102.5
Q ss_pred chhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC---CcceEEEc
Q psy8370 61 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD---KLDKCYNV 137 (256)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~i~~~~~~ 137 (256)
+....++.+...+.. ..++.+|||+|||+|.++..++..+. +|+++|+|+.+++.+++++...+. ++ .++++
T Consensus 136 dq~~~~~~l~~~~~~---~~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v-~~i~~ 210 (332)
T 2igt_A 136 EQIVHWEWLKNAVET---ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPI-RWICE 210 (332)
T ss_dssp GGHHHHHHHHHHHHH---SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCE-EEECS
T ss_pred HHHHHHHHHHHHHHh---cCCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccce-EEEEC
Confidence 344444455555511 24567999999999999999988887 999999999999999999876552 36 89999
Q ss_pred cccccCCC----CCCCceeEEEechh----------hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCC
Q psy8370 138 GIQDFKPE----DLNIKYDVIWIQWV----------LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDED 203 (256)
Q Consensus 138 d~~~~~~~----~~~~~~D~V~~~~~----------l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 203 (256)
|+.++... .. +||+|+++-- ++.. .....+++.+.++|+|||.+++.......
T Consensus 211 D~~~~l~~~~~~~~--~fD~Ii~dPP~~~~~~~~~~~~~~--~~~~~ll~~~~~~LkpgG~lli~~~~~~~--------- 277 (332)
T 2igt_A 211 DAMKFIQREERRGS--TYDIILTDPPKFGRGTHGEVWQLF--DHLPLMLDICREILSPKALGLVLTAYSIR--------- 277 (332)
T ss_dssp CHHHHHHHHHHHTC--CBSEEEECCCSEEECTTCCEEEHH--HHHHHHHHHHHHTBCTTCCEEEEEECCTT---------
T ss_pred cHHHHHHHHHhcCC--CceEEEECCccccCCchHHHHHHH--HHHHHHHHHHHHhcCcCcEEEEEECCCCC---------
Confidence 99876532 23 7999999421 1222 45678999999999999998876422211
Q ss_pred CceeeCHHHHHHHHH----hcCCcEEE
Q psy8370 204 SSVVRSLPQFCLLFS----KANLKCVK 226 (256)
Q Consensus 204 ~~~~~~~~~~~~~l~----~~gf~~~~ 226 (256)
.+...+.+++. ++|+.+..
T Consensus 278 ----~~~~~~~~~l~~a~~~~g~~v~~ 300 (332)
T 2igt_A 278 ----ASFYSMHELMRETMRGAGGVVAS 300 (332)
T ss_dssp ----SCHHHHHHHHHHHTTTSCSEEEE
T ss_pred ----CCHHHHHHHHHHHHHHcCCeEEE
Confidence 13344555544 68887763
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-16 Score=123.51 Aligned_cols=137 Identities=12% Similarity=-0.029 Sum_probs=99.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.+++++...+. ++ .++.+|+.++++ .. +||+|+++
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~-~~--~~D~v~~~ 151 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTGM-RVIAIDIDPVKIALARNNAEVYGIADKI-EFICGDFLLLAS-FL--KADVVFLS 151 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCGGGE-EEEESCHHHHGG-GC--CCSEEEEC
T ss_pred cCCCEEEECccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCcCe-EEEECChHHhcc-cC--CCCEEEEC
Confidence 3678999999999999999988874 999999999999999999887663 57 899999988763 33 79999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
..+++... ....+.+++++|+|||.+++............ .-....+.+++..++...|.-.+.
T Consensus 152 ~~~~~~~~--~~~~~~~~~~~L~pgG~~i~~~~~~~~~~~~~---~lp~~~~~~~~~~~l~~~g~~~i~ 215 (241)
T 3gdh_A 152 PPWGGPDY--ATAETFDIRTMMSPDGFEIFRLSKKITNNIVY---FLPRNADIDQVASLAGPGGQVEIE 215 (241)
T ss_dssp CCCSSGGG--GGSSSBCTTTSCSSCHHHHHHHHHHHCSCEEE---EEETTBCHHHHHHTTCTTCCEEEE
T ss_pred CCcCCcch--hhhHHHHHHhhcCCcceeHHHHHHhhCCceEE---ECCCCCCHHHHHHHhccCCCEEEE
Confidence 88888743 23467788999999999776421111100000 000013567777888777754443
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.57 E-value=7.9e-14 Score=112.84 Aligned_cols=143 Identities=9% Similarity=0.077 Sum_probs=103.5
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEcccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDF 142 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~ 142 (256)
..++..++ ...++.+|||+|||+|..+..+++.. ..+|+++|+|+.+++.++++....+. ++ .+..+|+.++
T Consensus 107 s~l~~~~l----~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v-~~~~~D~~~~ 181 (315)
T 1ixk_A 107 SMYPPVAL----DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNV-ILFHSSSLHI 181 (315)
T ss_dssp HHHHHHHH----CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSE-EEESSCGGGG
T ss_pred HHHHHHHh----CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeE-EEEECChhhc
Confidence 34445555 46778899999999999999998763 23899999999999999999987663 56 8899999887
Q ss_pred CCCCCCCceeEEEech------hhhccC-------HH-------HHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCC
Q psy8370 143 KPEDLNIKYDVIWIQW------VLMFIL-------DE-------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDE 202 (256)
Q Consensus 143 ~~~~~~~~~D~V~~~~------~l~~~~-------~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 202 (256)
+.... +||+|++.. ++.+.+ .. ....+++++.++|||||.++++.......
T Consensus 182 ~~~~~--~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~------- 252 (315)
T 1ixk_A 182 GELNV--EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE------- 252 (315)
T ss_dssp GGGCC--CEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG-------
T ss_pred ccccc--cCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChH-------
Confidence 65334 799999852 222221 11 12579999999999999999864221111
Q ss_pred CCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 203 DSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
.+...+..++++.||+++..
T Consensus 253 -----Ene~~v~~~l~~~~~~~~~~ 272 (315)
T 1ixk_A 253 -----ENEFVIQWALDNFDVELLPL 272 (315)
T ss_dssp -----GTHHHHHHHHHHSSEEEECC
T ss_pred -----HhHHHHHHHHhcCCCEEecC
Confidence 13455677888899887654
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=113.66 Aligned_cols=128 Identities=11% Similarity=0.111 Sum_probs=99.7
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHh-c-CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCce
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAK-H-FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
.....++.+|||+|||+|.++..++.. + ..+++++|+++.+++.|++++...+ .++ .+..+|+.+..+ .. +|
T Consensus 88 ~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~-~~--~~ 163 (255)
T 3mb5_A 88 YAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRV-TIKLKDIYEGIE-EE--NV 163 (255)
T ss_dssp HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTE-EEECSCGGGCCC-CC--SE
T ss_pred hhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCce-EEEECchhhccC-CC--Cc
Confidence 335778899999999999999999887 4 3499999999999999999987665 236 899999986633 33 69
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcC--CcEEEeee
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN--LKCVKSEK 229 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--f~~~~~~~ 229 (256)
|+|+++ .+ +...+++++.++|+|||.+++..... ....++.+.++++| |..++...
T Consensus 164 D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~~---------------~~~~~~~~~l~~~g~~f~~~~~~e 221 (255)
T 3mb5_A 164 DHVILD-----LP--QPERVVEHAAKALKPGGFFVAYTPCS---------------NQVMRLHEKLREFKDYFMKPRTIN 221 (255)
T ss_dssp EEEEEC-----SS--CGGGGHHHHHHHEEEEEEEEEEESSH---------------HHHHHHHHHHHHTGGGBSCCEEEC
T ss_pred CEEEEC-----CC--CHHHHHHHHHHHcCCCCEEEEEECCH---------------HHHHHHHHHHHHcCCCccccEEEE
Confidence 999984 22 22468999999999999999863211 12466788899999 97776543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=111.87 Aligned_cols=117 Identities=19% Similarity=0.196 Sum_probs=88.3
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQD 141 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~ 141 (256)
.+++..+. ...++.+|||||||+|..+..++.... .+|+++|+++.+++.+++++...+ .++ .++.+|+.+
T Consensus 47 ~~~l~~l~----~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~ 121 (223)
T 3duw_A 47 GKFLQLLV----QIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRV-EVRTGLALD 121 (223)
T ss_dssp HHHHHHHH----HHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTE-EEEESCHHH
T ss_pred HHHHHHHH----HhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-EEEEcCHHH
Confidence 34555554 234678999999999999999987732 399999999999999999998665 346 899999876
Q ss_pred cCCCC--C-CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEeccc
Q psy8370 142 FKPED--L-NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 192 (256)
Q Consensus 142 ~~~~~--~-~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 192 (256)
..+.. . .++||+|++..... ....+++.+.++|+|||.+++.+...
T Consensus 122 ~~~~~~~~~~~~fD~v~~d~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~ 170 (223)
T 3duw_A 122 SLQQIENEKYEPFDFIFIDADKQ-----NNPAYFEWALKLSRPGTVIIGDNVVR 170 (223)
T ss_dssp HHHHHHHTTCCCCSEEEECSCGG-----GHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred HHHHHHhcCCCCcCEEEEcCCcH-----HHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 43210 0 13699999876533 33579999999999999888865433
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-14 Score=110.38 Aligned_cols=102 Identities=19% Similarity=0.154 Sum_probs=83.1
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
...++.+|||||||+|.++..++..+..+|+++|+++.+++.+++++...+ .++ .+..+|.....+... .||+|++
T Consensus 88 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~--~fD~Ii~ 164 (235)
T 1jg1_A 88 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNV-HVILGDGSKGFPPKA--PYDVIIV 164 (235)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSE-EEEESCGGGCCGGGC--CEEEEEE
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEECCcccCCCCCC--CccEEEE
Confidence 467788999999999999999988763589999999999999999988765 356 888888733222222 5999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
..++++++. ++.+.|+|||.+++...
T Consensus 165 ~~~~~~~~~--------~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 165 TAGAPKIPE--------PLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred CCcHHHHHH--------HHHHhcCCCcEEEEEEe
Confidence 999888853 57889999999999754
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-14 Score=111.71 Aligned_cols=107 Identities=13% Similarity=0.127 Sum_probs=78.9
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHh------cC-CCcceEEEccccc-cC--CCCC
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILK------DC-DKLDKCYNVGIQD-FK--PEDL 147 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~------~~-~~i~~~~~~d~~~-~~--~~~~ 147 (256)
..++.+|||||||+|.++..++.... ..++|+|+|+.|++.|+++... .+ .++ .++.+|+.+ ++ ...+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv-~~~~~d~~~~l~~~~~~~ 122 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNI-ACLRSNAMKHLPNFFYKG 122 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTE-EEEECCTTTCHHHHCCTT
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeE-EEEECcHHHhhhhhCCCc
Confidence 35677999999999999999987653 3899999999999999987653 22 457 899999986 43 3344
Q ss_pred CCceeEEEechhhhccCHH--H----HHHHHHHHhhhcCCCcEEEEE
Q psy8370 148 NIKYDVIWIQWVLMFILDE--D----IIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~--~----~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+||.|++...-.+.... . ...+++++.++|+|||.|++.
T Consensus 123 --~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~ 167 (235)
T 3ckk_A 123 --QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI 167 (235)
T ss_dssp --CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred --CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence 89999876432221100 0 136999999999999999986
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.4e-14 Score=110.54 Aligned_cols=129 Identities=21% Similarity=0.228 Sum_probs=98.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.++++...++ .++ .++.+|..++... . .||.|+++
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v-~~~~~D~~~~~~~-~--~~D~Vi~~ 199 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRM-SAYNMDNRDFPGE-N--IADRILMG 199 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTE-EEECSCTTTCCCC-S--CEEEEEEC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcE-EEEeCcHHHhccc-c--CCCEEEEC
Confidence 6789999999999999999988887799999999999999999998766 456 8899999887653 3 69999986
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
.-.. ...++..+.+.|+|||.+.+......... .....+.+.++..+.|+.+...
T Consensus 200 ~p~~------~~~~l~~a~~~lk~gG~ih~~~~~~e~~~---------~~~~~e~i~~~~~~~g~~v~~~ 254 (278)
T 3k6r_A 200 YVVR------THEFIPKALSIAKDGAIIHYHNTVPEKLM---------PREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp CCSS------GGGGHHHHHHHEEEEEEEEEEEEEEGGGT---------TTTTHHHHHHHHHHTTCEEEEE
T ss_pred CCCc------HHHHHHHHHHHcCCCCEEEEEeeeccccc---------chhHHHHHHHHHHHcCCcEEEE
Confidence 3211 12577788899999999987543322211 1123466778888999987543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=112.42 Aligned_cols=116 Identities=20% Similarity=0.168 Sum_probs=87.8
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEcccccc
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDF 142 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~ 142 (256)
+++..+. ...++.+|||||||+|..+..++... ..+|+++|+++.+++.+++++...+ .++ .++.+|+.+.
T Consensus 54 ~~l~~l~----~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~ 128 (225)
T 3tr6_A 54 QLLALLV----KLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKI-GLRLSPAKDT 128 (225)
T ss_dssp HHHHHHH----HHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTE-EEEESCHHHH
T ss_pred HHHHHHH----HhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCce-EEEeCCHHHH
Confidence 4455444 23467899999999999999998762 3499999999999999999998765 347 8999998665
Q ss_pred CCCCC----CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEeccc
Q psy8370 143 KPEDL----NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 192 (256)
Q Consensus 143 ~~~~~----~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 192 (256)
.+... .++||+|++.... .....+++.+.++|+|||.+++.+...
T Consensus 129 ~~~~~~~~~~~~fD~v~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 129 LAELIHAGQAWQYDLIYIDADK-----ANTDLYYEESLKLLREGGLIAVDNVLR 177 (225)
T ss_dssp HHHHHTTTCTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred HHHhhhccCCCCccEEEECCCH-----HHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 32110 0379999976532 334679999999999999999875444
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-13 Score=111.54 Aligned_cols=132 Identities=13% Similarity=-0.011 Sum_probs=100.3
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCce
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKH-F-DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
......++.+|||+|||+|.++..++..+ . .+++|+|+++.+++.|+++....+. ++ .+.+.|+.+++.... .|
T Consensus 197 ~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i-~~~~~D~~~~~~~~~--~~ 273 (354)
T 3tma_A 197 RLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWI-RFLRADARHLPRFFP--EV 273 (354)
T ss_dssp HHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTC-EEEECCGGGGGGTCC--CC
T ss_pred HHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCce-EEEeCChhhCccccC--CC
Confidence 44466778899999999999999998876 2 3899999999999999999987663 56 999999999876655 68
Q ss_pred eEEEechhhhcc-C-----HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEE
Q psy8370 152 DVIWIQWVLMFI-L-----DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 225 (256)
Q Consensus 152 D~V~~~~~l~~~-~-----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~ 225 (256)
|+|+++--+..- . ......+++.+.++|+|||.+++... +...+..+++ .||+..
T Consensus 274 D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~------------------~~~~~~~~~~-~g~~~~ 334 (354)
T 3tma_A 274 DRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL------------------RPALLKRALP-PGFALR 334 (354)
T ss_dssp SEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES------------------CHHHHHHHCC-TTEEEE
T ss_pred CEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC------------------CHHHHHHHhh-cCcEEE
Confidence 999996332211 0 02246799999999999999998631 2334455555 888876
Q ss_pred Eee
Q psy8370 226 KSE 228 (256)
Q Consensus 226 ~~~ 228 (256)
...
T Consensus 335 ~~~ 337 (354)
T 3tma_A 335 HAR 337 (354)
T ss_dssp EEE
T ss_pred EEE
Confidence 644
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.55 E-value=9.7e-15 Score=115.76 Aligned_cols=98 Identities=16% Similarity=0.103 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.++.+|||||||+|.++..++... ..+|+|+|+|+.+++.++++. .++ .+...|+.+++...+ +||+|++..
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----~~~-~~~~~d~~~~~~~~~--~fD~v~~~~ 156 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----PQV-TFCVASSHRLPFSDT--SMDAIIRIY 156 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----TTS-EEEECCTTSCSBCTT--CEEEEEEES
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC----CCc-EEEEcchhhCCCCCC--ceeEEEEeC
Confidence 467899999999999999998763 238999999999999998764 245 889999988765555 899999875
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccC
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 193 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 193 (256)
+. ..++++.++|+|||.+++..+...
T Consensus 157 ~~---------~~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 157 AP---------CKAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp CC---------CCHHHHHHHEEEEEEEEEEEECTT
T ss_pred Ch---------hhHHHHHHhcCCCcEEEEEEcCHH
Confidence 52 357889999999999999865443
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-15 Score=117.36 Aligned_cols=162 Identities=14% Similarity=0.041 Sum_probs=98.7
Q ss_pred HHHHHHHHhccCCC--CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEcccc
Q psy8370 66 NQFLSSLYCQKKSD--PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQ 140 (256)
Q Consensus 66 ~~~l~~~~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~ 140 (256)
..++..++ ..... .++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.|+++....+ .++ .++.+|+.
T Consensus 49 ~~~~~~~~-~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~ 126 (254)
T 2h00_A 49 IHWVEDLI-GHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLI-KVVKVPQK 126 (254)
T ss_dssp HHHHHHHH-CCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTE-EEEECCTT
T ss_pred HHHHHHHH-hhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccE-EEEEcchh
Confidence 34555555 33222 256799999999999999887763 2499999999999999999988665 246 89999976
Q ss_pred cc-C--CCCC-CCceeEEEechhhhccC-------------HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCC
Q psy8370 141 DF-K--PEDL-NIKYDVIWIQWVLMFIL-------------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDED 203 (256)
Q Consensus 141 ~~-~--~~~~-~~~~D~V~~~~~l~~~~-------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 203 (256)
+. . .... .++||+|+++-.++... ......++.+++++|||||.+.+.+.........+....
T Consensus 127 ~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g 206 (254)
T 2h00_A 127 TLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLR 206 (254)
T ss_dssp CSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBS
T ss_pred hhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceE
Confidence 52 1 1210 13799999984333221 011234667888889998887765321111000000000
Q ss_pred C-----ceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 204 S-----SVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 204 ~-----~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
. ....+.+++.++++++||+.++...
T Consensus 207 ~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~ 237 (254)
T 2h00_A 207 WYSCMLGKKCSLAPLKEELRIQGVPKVTYTE 237 (254)
T ss_dssp CEEEEESSTTSHHHHHHHHHHTTCSEEEEEE
T ss_pred EEEECCCChhHHHHHHHHHHHcCCCceEEEE
Confidence 0 0112347888999999998876553
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.9e-14 Score=111.75 Aligned_cols=127 Identities=13% Similarity=0.191 Sum_probs=98.3
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHh-c-CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCcee
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAK-H-FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
....++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++++...+ .++ .+...|+.+.. ... +||
T Consensus 108 ~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~-~~~--~~D 183 (277)
T 1o54_A 108 LDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERV-TIKVRDISEGF-DEK--DVD 183 (277)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGE-EEECCCGGGCC-SCC--SEE
T ss_pred hCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCE-EEEECCHHHcc-cCC--ccC
Confidence 35677889999999999999999887 4 3499999999999999999987655 356 88899988763 223 799
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
+|+++ .+ +...+++++.++|+|||.+++..... ....++.+.+++.||..++...
T Consensus 184 ~V~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~~~---------------~~~~~~~~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 184 ALFLD-----VP--DPWNYIDKCWEALKGGGRFATVCPTT---------------NQVQETLKKLQELPFIRIEVWE 238 (277)
T ss_dssp EEEEC-----CS--CGGGTHHHHHHHEEEEEEEEEEESSH---------------HHHHHHHHHHHHSSEEEEEEEC
T ss_pred EEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeCCH---------------HHHHHHHHHHHHCCCceeEEEE
Confidence 99984 22 22468999999999999999964211 1235667788889998776543
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=104.95 Aligned_cols=128 Identities=15% Similarity=0.059 Sum_probs=96.2
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
...++.+|||+|||+|.++..++..+..+++|+|+|+.+++.++++....+.++ .++.+|+.+++ . +||+|+++
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~---~--~~D~v~~~ 119 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKF-KVFIGDVSEFN---S--RVDIVIMN 119 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSE-EEEESCGGGCC---C--CCSEEEEC
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCE-EEEECchHHcC---C--CCCEEEEc
Confidence 345678999999999999999988876689999999999999999987655466 89999998863 3 69999998
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
..++.........+++.+.+.+ |+.+++.. . ...+.+.+.+.+.+.||++....
T Consensus 120 ~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~~-~--------------~~~~~~~~~~~l~~~g~~~~~~~ 173 (207)
T 1wy7_A 120 PPFGSQRKHADRPFLLKAFEIS--DVVYSIHL-A--------------KPEVRRFIEKFSWEHGFVVTHRL 173 (207)
T ss_dssp CCCSSSSTTTTHHHHHHHHHHC--SEEEEEEE-C--------------CHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCCccccCCchHHHHHHHHHhc--CcEEEEEe-C--------------CcCCHHHHHHHHHHCCCeEEEEE
Confidence 7766664433456888898888 55443320 0 00123556778899999876544
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.4e-14 Score=117.41 Aligned_cols=150 Identities=16% Similarity=0.096 Sum_probs=102.7
Q ss_pred cchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC---CcceEEE
Q psy8370 60 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD---KLDKCYN 136 (256)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~i~~~~~ 136 (256)
.+....+.++..++ .++.+|||+|||+|.++..++..++.+|+++|+|+.+++.|+++....+. ++ .+++
T Consensus 197 ~~~~~~~~~~~~~~------~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v-~~~~ 269 (385)
T 2b78_A 197 LDQRQVRNELINGS------AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANH-QLVV 269 (385)
T ss_dssp GGGHHHHHHHHHTT------TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTE-EEEE
T ss_pred CcHHHHHHHHHHHh------cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccce-EEEE
Confidence 34444445554432 46789999999999999999887777999999999999999999987652 56 8999
Q ss_pred ccccccCCCC--CCCceeEEEechhh-----hccCH--HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCcee
Q psy8370 137 VGIQDFKPED--LNIKYDVIWIQWVL-----MFILD--EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVV 207 (256)
Q Consensus 137 ~d~~~~~~~~--~~~~~D~V~~~~~l-----~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 207 (256)
+|+.+..+.. ...+||+|++.--. ..... .....+++.+.+.|+|||.++++.........
T Consensus 270 ~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~---------- 339 (385)
T 2b78_A 270 MDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVS---------- 339 (385)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHH----------
T ss_pred CCHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHH----------
Confidence 9987753210 11379999985211 12211 45567888999999999999997533222100
Q ss_pred eCHHHHHHHHHhcCCcEEE
Q psy8370 208 RSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 208 ~~~~~~~~~l~~~gf~~~~ 226 (256)
.-.+.+...+..+|.+++.
T Consensus 340 ~~~~~i~~~~~~~g~~~~~ 358 (385)
T 2b78_A 340 QFKKQIEKGFGKQKHTYLD 358 (385)
T ss_dssp HHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHHHHHcCCcEEE
Confidence 0123344556677887443
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-14 Score=108.85 Aligned_cols=103 Identities=14% Similarity=0.194 Sum_probs=82.1
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
.++.+|||||||+|..+..++... ..+|+++|+++.+++.+++++...+ .++ .++.+|..+..+... + ||+|+
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~~~-~-fD~v~ 131 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRV-ELQVGDPLGIAAGQR-D-IDILF 131 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGE-EEEESCHHHHHTTCC-S-EEEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceE-EEEEecHHHHhccCC-C-CCEEE
Confidence 356799999999999999997763 2399999999999999999987654 246 889999877643333 4 99999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
+.... .....+++++.++|+|||.+++.+.
T Consensus 132 ~~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 132 MDCDV-----FNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp EETTT-----SCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred EcCCh-----hhhHHHHHHHHHhcCCCeEEEEECc
Confidence 87432 2345799999999999999998543
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7e-14 Score=103.50 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=89.4
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHh-cC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC--------CCCC
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK--------PEDL 147 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~--------~~~~ 147 (256)
...++.+|||+|||+|.++..++.. +. .+++++|+++ +++. .++ .+...|+.+.+ ....
T Consensus 19 ~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------~~~-~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------VGV-DFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------TTE-EEEESCTTSHHHHHHHHHHHTTC
T ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------CcE-EEEEcccccchhhhhhhccCCCC
Confidence 3567889999999999999999887 33 4999999999 6543 256 88899988764 3334
Q ss_pred CCceeEEEechhhhccCHH---H------HHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHH
Q psy8370 148 NIKYDVIWIQWVLMFILDE---D------IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFS 218 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~---~------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 218 (256)
+||+|+++..+++.... . ...+++++.++|+|||.+++...... ...++...+.
T Consensus 88 --~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~---------------~~~~~~~~~~ 150 (180)
T 1ej0_A 88 --KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE---------------GFDEYLREIR 150 (180)
T ss_dssp --CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST---------------THHHHHHHHH
T ss_pred --ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC---------------cHHHHHHHHH
Confidence 79999998777665322 1 15789999999999999998643221 2355666666
Q ss_pred hcCCcEEEee
Q psy8370 219 KANLKCVKSE 228 (256)
Q Consensus 219 ~~gf~~~~~~ 228 (256)
.. |..+...
T Consensus 151 ~~-~~~~~~~ 159 (180)
T 1ej0_A 151 SL-FTKVKVR 159 (180)
T ss_dssp HH-EEEEEEE
T ss_pred Hh-hhhEEee
Confidence 64 7666544
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-14 Score=109.89 Aligned_cols=114 Identities=16% Similarity=0.235 Sum_probs=88.2
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFK 143 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~ 143 (256)
.++..++ ...++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++...+ .++ .+..+|+.+..
T Consensus 44 ~~l~~~~----~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~ 118 (233)
T 2gpy_A 44 ESLLHLL----KMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRI-ELLFGDALQLG 118 (233)
T ss_dssp HHHHHHH----HHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTE-EEECSCGGGSH
T ss_pred HHHHHHH----hccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-EEEECCHHHHH
Confidence 4454444 23467899999999999999998774 2499999999999999999988765 346 88999987753
Q ss_pred CCC-CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 144 PED-LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 144 ~~~-~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
+.. ..++||+|++....+ ....+++.+.+.|+|||.+++.+.
T Consensus 119 ~~~~~~~~fD~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 119 EKLELYPLFDVLFIDAAKG-----QYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp HHHTTSCCEEEEEEEGGGS-----CHHHHHHHHGGGEEEEEEEEEETT
T ss_pred HhcccCCCccEEEECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcC
Confidence 211 013799999987654 335799999999999999998643
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.3e-15 Score=114.91 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=89.5
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQD 141 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~ 141 (256)
.+++..+. ...++.+|||||||+|..+..++... ..+|+++|+++.+++.|++++...+ .++ .++.+|+.+
T Consensus 49 ~~~l~~l~----~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i-~~~~gda~~ 123 (242)
T 3r3h_A 49 AQFMQMLI----RLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKI-KLRLGPALD 123 (242)
T ss_dssp HHHHHHHH----HHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTE-EEEESCHHH
T ss_pred HHHHHHHH----hhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-EEEEcCHHH
Confidence 35555554 23457899999999999999998753 2399999999999999999998765 367 899999877
Q ss_pred cCCCC----CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEeccc
Q psy8370 142 FKPED----LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 192 (256)
Q Consensus 142 ~~~~~----~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 192 (256)
..+.. ..++||+|++.... .....+++.+.++|+|||.+++.+...
T Consensus 124 ~l~~~~~~~~~~~fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~~ 173 (242)
T 3r3h_A 124 TLHSLLNEGGEHQFDFIFIDADK-----TNYLNYYELALKLVTPKGLIAIDNIFW 173 (242)
T ss_dssp HHHHHHHHHCSSCEEEEEEESCG-----GGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred HHHHHhhccCCCCEeEEEEcCCh-----HHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence 64321 01379999987542 334578999999999999999865444
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=8.8e-14 Score=123.54 Aligned_cols=141 Identities=14% Similarity=0.129 Sum_probs=104.1
Q ss_pred chhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC---CcceEEEc
Q psy8370 61 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD---KLDKCYNV 137 (256)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~i~~~~~~ 137 (256)
+.+..++++..+. ++.+|||+|||+|.++..++..+..+|++||+|+.+++.+++++...+. ++ .++++
T Consensus 526 d~r~~r~~l~~~~-------~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v-~~i~~ 597 (703)
T 3v97_A 526 DHRIARRMLGQMS-------KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAH-RLIQA 597 (703)
T ss_dssp GGHHHHHHHHHHC-------TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTE-EEEES
T ss_pred cHHHHHHHHHHhc-------CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccce-EEEec
Confidence 3444445555433 5789999999999999999888877899999999999999999987652 46 89999
Q ss_pred cccccCCCCCCCceeEEEechh-----------hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCce
Q psy8370 138 GIQDFKPEDLNIKYDVIWIQWV-----------LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSV 206 (256)
Q Consensus 138 d~~~~~~~~~~~~~D~V~~~~~-----------l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 206 (256)
|+.++..... ++||+|++.-- +... .....+++.+.++|+|||.++++.+.......
T Consensus 598 D~~~~l~~~~-~~fD~Ii~DPP~f~~~~~~~~~~~~~--~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~--------- 665 (703)
T 3v97_A 598 DCLAWLREAN-EQFDLIFIDPPTFSNSKRMEDAFDVQ--RDHLALMKDLKRLLRAGGTIMFSNNKRGFRMD--------- 665 (703)
T ss_dssp CHHHHHHHCC-CCEEEEEECCCSBC-------CCBHH--HHHHHHHHHHHHHEEEEEEEEEEECCTTCCCC---------
T ss_pred CHHHHHHhcC-CCccEEEECCccccCCccchhHHHHH--HHHHHHHHHHHHhcCCCcEEEEEECCcccccC---------
Confidence 9987543222 37999998531 2222 46678999999999999999987544322211
Q ss_pred eeCHHHHHHHHHhcCCcEEEee
Q psy8370 207 VRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 207 ~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
...+++.||+.....
T Consensus 666 -------~~~l~~~g~~~~~i~ 680 (703)
T 3v97_A 666 -------LDGLAKLGLKAQEIT 680 (703)
T ss_dssp -------HHHHHHTTEEEEECT
T ss_pred -------HHHHHHcCCceeeee
Confidence 467788898754443
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-14 Score=110.85 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=87.2
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEcccccc
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDF 142 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~ 142 (256)
+++..+. ...++.+|||||||+|..+..++.... .+|+++|+++.+++.+++++...+ .++ .++.+|+.+.
T Consensus 69 ~ll~~l~----~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i-~~~~gda~~~ 143 (247)
T 1sui_A 69 QFLSMLL----KLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKI-DFREGPALPV 143 (247)
T ss_dssp HHHHHHH----HHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGE-EEEESCHHHH
T ss_pred HHHHHHH----HhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCe-EEEECCHHHH
Confidence 4555554 234568999999999999999987632 399999999999999999988765 356 8899998765
Q ss_pred CCCC-----CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 143 KPED-----LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 143 ~~~~-----~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
.+.. ..++||+|++.... .....+++.+.++|+|||.+++.+..
T Consensus 144 l~~l~~~~~~~~~fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~ 192 (247)
T 1sui_A 144 LDEMIKDEKNHGSYDFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_dssp HHHHHHSGGGTTCBSEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEECTT
T ss_pred HHHHHhccCCCCCEEEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 3211 01379999987542 23457999999999999999986533
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=109.92 Aligned_cols=104 Identities=20% Similarity=0.242 Sum_probs=84.3
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHh-c-CCeEEEEeCCHHHHHHHHHHHHhc-C---CCcceEEEccccccCCCCCCC
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAK-H-FDKIDLLEQSSKFIEQAKEEILKD-C---DKLDKCYNVGIQDFKPEDLNI 149 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~-~---~~i~~~~~~d~~~~~~~~~~~ 149 (256)
.....++.+|||+|||+|.++..++.. + ..+++++|+++.+++.+++++... + .++ .+..+|+.+.+....
T Consensus 94 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v-~~~~~d~~~~~~~~~-- 170 (280)
T 1i9g_A 94 EGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNW-RLVVSDLADSELPDG-- 170 (280)
T ss_dssp HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTE-EEECSCGGGCCCCTT--
T ss_pred HcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcE-EEEECchHhcCCCCC--
Confidence 335678889999999999999999875 2 349999999999999999998765 3 466 889999988754444
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+||+|++. .+ +...+++++.++|+|||.+++..
T Consensus 171 ~~D~v~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~ 203 (280)
T 1i9g_A 171 SVDRAVLD-----ML--APWEVLDAVSRLLVAGGVLMVYV 203 (280)
T ss_dssp CEEEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred ceeEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEe
Confidence 79999984 22 22368999999999999999964
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-13 Score=112.76 Aligned_cols=107 Identities=9% Similarity=0.059 Sum_probs=82.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.++.+|||+|||+|.++..++..+. .|+++|+|+.+++.+++++...+... .+.++|+.+...... +.||+|++.--
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~~~~l~~~~-~~fD~Ii~dpP 289 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLRV-DIRHGEALPTLRGLE-GPFHHVLLDPP 289 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCC-EEEESCHHHHHHTCC-CCEEEEEECCC
T ss_pred cCCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCCC-cEEEccHHHHHHHhc-CCCCEEEECCC
Confidence 4588999999999999999988887 59999999999999999998766444 677889887643322 25999998632
Q ss_pred hhc-----cC--HHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 160 LMF-----IL--DEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 160 l~~-----~~--~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
... +. ......+++.+.++|+|||.+++..
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s 326 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSS 326 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 100 00 0345678999999999999999753
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-13 Score=103.34 Aligned_cols=120 Identities=16% Similarity=0.146 Sum_probs=87.7
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
..++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.++++.. ++ .++.+|+.+++ . +||+|+++.
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~----~~-~~~~~d~~~~~---~--~~D~v~~~~ 118 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG----GV-NFMVADVSEIS---G--KYDTWIMNP 118 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT----TS-EEEECCGGGCC---C--CEEEEEECC
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC----CC-EEEECcHHHCC---C--CeeEEEECC
Confidence 45678999999999999999988766589999999999999998864 46 89999998863 3 799999998
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
.+++.+......+++++.+.+ |+ +++.... .+...+.+.+...| .+....
T Consensus 119 p~~~~~~~~~~~~l~~~~~~~--g~-~~~~~~~----------------~~~~~~~~~~~~~g-~~~~~~ 168 (200)
T 1ne2_A 119 PFGSVVKHSDRAFIDKAFETS--MW-IYSIGNA----------------KARDFLRREFSARG-DVFREE 168 (200)
T ss_dssp CC-------CHHHHHHHHHHE--EE-EEEEEEG----------------GGHHHHHHHHHHHE-EEEEEE
T ss_pred CchhccCchhHHHHHHHHHhc--Cc-EEEEEcC----------------chHHHHHHHHHHCC-CEEEEE
Confidence 888886543457899999988 44 4443211 12355677888888 655443
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.4e-14 Score=107.54 Aligned_cols=101 Identities=23% Similarity=0.262 Sum_probs=83.1
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcC------CeEEEEeCCHHHHHHHHHHHHhcC------CCcceEEEccccccC---
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHF------DKIDLLEQSSKFIEQAKEEILKDC------DKLDKCYNVGIQDFK--- 143 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~------~~v~~vD~s~~~~~~a~~~~~~~~------~~i~~~~~~d~~~~~--- 143 (256)
..++.+|||||||+|.++..++.... .+|+++|+++.+++.++++....+ .++ .+..+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNF-KIIHKNIYQVNEEE 156 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTE-EEEECCGGGCCHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCE-EEEECChHhccccc
Confidence 56778999999999999999987653 389999999999999999987653 356 88999988754
Q ss_pred -CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 144 -PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 144 -~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.... +||+|++...++++. +.+.+.|+|||.+++...
T Consensus 157 ~~~~~--~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 157 KKELG--LFDAIHVGASASELP--------EILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHHC--CEEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEEE
T ss_pred CccCC--CcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEc
Confidence 3334 799999998887663 567899999999999743
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.4e-14 Score=110.04 Aligned_cols=114 Identities=17% Similarity=0.171 Sum_probs=86.4
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEcccccc
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDF 142 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~ 142 (256)
+++..+. ...++.+|||||||+|..+..++... ..+|+++|+++.+++.+++++...+ .++ .+..+|+.+.
T Consensus 50 ~~l~~l~----~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v-~~~~~d~~~~ 124 (239)
T 2hnk_A 50 QFLNILT----KISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKI-FLKLGSALET 124 (239)
T ss_dssp HHHHHHH----HHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGE-EEEESCHHHH
T ss_pred HHHHHHH----HhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCE-EEEECCHHHH
Confidence 4455444 23467899999999999999998874 3499999999999999999987654 236 8888887653
Q ss_pred CCCC-------------C-C-CceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 143 KPED-------------L-N-IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 143 ~~~~-------------~-~-~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+.. . . ++||+|++..... ....+++.+.+.|+|||.+++.+.
T Consensus 125 ~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 125 LQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE-----NYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp HHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG-----GHHHHHHHHHHHEEEEEEEEEECS
T ss_pred HHHHHhhcccccccccccCCCCCcCEEEEeCCHH-----HHHHHHHHHHHHcCCCeEEEEEcc
Confidence 2210 0 0 3799999985533 335789999999999999998653
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.51 E-value=9.2e-14 Score=107.36 Aligned_cols=101 Identities=18% Similarity=0.201 Sum_probs=82.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHh-cC------CeEEEEeCCHHHHHHHHHHHHhcC------CCcceEEEccccccCCC
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAK-HF------DKIDLLEQSSKFIEQAKEEILKDC------DKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~-~~------~~v~~vD~s~~~~~~a~~~~~~~~------~~i~~~~~~d~~~~~~~ 145 (256)
..++.+|||||||+|.++..++.. +. .+|+++|+++.+++.+++++...+ .++ .+..+|..+..+.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~ 160 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL-LIVEGDGRKGYPP 160 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE-EEEESCGGGCCGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCce-EEEECCcccCCCc
Confidence 567789999999999999998774 32 389999999999999999876532 356 8899998874333
Q ss_pred CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 146 DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 146 ~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.. +||+|++...+++++ +++.+.|+|||.+++...
T Consensus 161 ~~--~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 161 NA--PYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp GC--SEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CC--CccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 24 799999999888774 568899999999999743
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-13 Score=105.44 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=82.5
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhcC------CCcceEEEccccccCCCCCCCc
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKH-F-DKIDLLEQSSKFIEQAKEEILKDC------DKLDKCYNVGIQDFKPEDLNIK 150 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~------~~i~~~~~~d~~~~~~~~~~~~ 150 (256)
..++.+|||+|||+|..+..++... . .+|+++|+++.+++.++++....+ .++ .+...|+........ +
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~--~ 151 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRV-QLVVGDGRMGYAEEA--P 151 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSE-EEEESCGGGCCGGGC--C
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcE-EEEECCcccCcccCC--C
Confidence 5678899999999999999998763 3 389999999999999999887632 256 889999876554444 7
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
||+|++...++++. +.+.+.|+|||.+++...
T Consensus 152 fD~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 152 YDAIHVGAAAPVVP--------QALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred cCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEe
Confidence 99999998877663 467899999999999753
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-13 Score=106.81 Aligned_cols=108 Identities=11% Similarity=0.100 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhc--------C-CCcceEEEccccc-cCCCCCC
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKD--------C-DKLDKCYNVGIQD-FKPEDLN 148 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~--------~-~~i~~~~~~d~~~-~~~~~~~ 148 (256)
.++.+|||||||+|.++..++..+.. +|+|+|+|+.+++.++++.... + .++ .++.+|+.+ ++.....
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv-~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNI-NVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTE-EEEECCTTSCGGGTSCT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcE-EEEeccHHHHHHHhccc
Confidence 46789999999999999999888754 8999999999999999987653 3 366 899999887 3311112
Q ss_pred CceeEEEechhhhccCHH------HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 149 IKYDVIWIQWVLMFILDE------DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+.+|.|+....-.+.... ....+++++.++|+|||.+++.
T Consensus 127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 479999865321110000 0037999999999999999985
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=8.9e-14 Score=106.86 Aligned_cols=139 Identities=9% Similarity=0.057 Sum_probs=102.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.++.+|||||||+|-++..++... ..+|+++|+++.+++.++.++...+... .+...|.....+.. .||++++.-
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~-~~~v~D~~~~~p~~---~~DvaL~lk 206 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPH-RTNVADLLEDRLDE---PADVTLLLK 206 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCE-EEEECCTTTSCCCS---CCSEEEETT
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEeeecccCCCC---CcchHHHHH
Confidence 457899999999999999986653 3499999999999999999998877666 78888877665443 699999999
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
+++++.+......+ ++.+.|+|+|.++-.+...-.+.. ......-.+.|.+.+.+.|..+.+.+
T Consensus 207 ti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs-----~gm~~~Y~~~~e~~~~~~g~~~~~~~ 270 (281)
T 3lcv_B 207 TLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRS-----KGMFQNYSQSFESQARERSCRIQRLE 270 (281)
T ss_dssp CHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC------------CHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCC-----cchhhHHHHHHHHHHHhcCCceeeee
Confidence 99999665544566 899999999998875431111111 11111234667788888898665443
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.1e-14 Score=112.32 Aligned_cols=107 Identities=15% Similarity=0.192 Sum_probs=81.0
Q ss_pred CCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc-CCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
+.+|||||||+|.++..+++.. ..++++||+++.+++.|++++... ..++ .++.+|..++......++||+|++...
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv-~v~~~Da~~~l~~~~~~~fDvIi~D~~ 168 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRV-KIRVDDARMVAESFTPASRDVIIRDVF 168 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTE-EEEESCHHHHHHTCCTTCEEEEEECCS
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCce-EEEECcHHHHHhhccCCCCCEEEECCC
Confidence 4599999999999999998743 228999999999999999988643 2467 899999887643211138999998644
Q ss_pred hhccCHHH--HHHHHHHHhhhcCCCcEEEEEe
Q psy8370 160 LMFILDED--IIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 160 l~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+...... ...+++.++++|+|||.+++..
T Consensus 169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence 33221111 1479999999999999999863
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.8e-13 Score=100.79 Aligned_cols=139 Identities=16% Similarity=0.161 Sum_probs=89.4
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC------------
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHF---DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK------------ 143 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~------------ 143 (256)
..++.+|||+|||+|.++..++.... .+|+|+|+|+.. ...++ .+..+|+.+..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~~~~v-~~~~~d~~~~~~~~~~~~~~i~~ 88 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------PIPNV-YFIQGEIGKDNMNNIKNINYIDN 88 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------CCTTC-EEEECCTTTTSSCCC--------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------CCCCc-eEEEccccchhhhhhcccccccc
Confidence 46678999999999999999987743 489999999831 11246 88889987764
Q ss_pred -------------CCCCCCceeEEEechhhhccCH---HH------HHHHHHHHhhhcCCCcEEEEEecccCCCCccccC
Q psy8370 144 -------------PEDLNIKYDVIWIQWVLMFILD---ED------IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDD 201 (256)
Q Consensus 144 -------------~~~~~~~~D~V~~~~~l~~~~~---~~------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~ 201 (256)
.... +||+|++...+++... +. ...++++++++|+|||.+++.....
T Consensus 89 ~~~~~~~~~~~~~~~~~--~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~--------- 157 (201)
T 2plw_A 89 MNNNSVDYKLKEILQDK--KIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG--------- 157 (201)
T ss_dssp ---CHHHHHHHHHHTTC--CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS---------
T ss_pred ccchhhHHHHHhhcCCC--cccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC---------
Confidence 2223 7999999876655311 11 1348899999999999999853211
Q ss_pred CCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCcceeeeEEEec
Q psy8370 202 EDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246 (256)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~l~ 246 (256)
.+..++...+.. .|..+........-......++.+..
T Consensus 158 ------~~~~~l~~~l~~-~f~~v~~~~~~~~r~~s~e~y~v~~~ 195 (201)
T 2plw_A 158 ------SQTNNLKTYLKG-MFQLVHTTKPKASRNESREIYLVCKN 195 (201)
T ss_dssp ------TTHHHHHHHHHT-TEEEEEECCCC-----CCEEEEEEEE
T ss_pred ------CCHHHHHHHHHH-HHheEEEECCcccCCcCceEEEEEec
Confidence 124566666665 46655443222222233444555543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.2e-13 Score=107.05 Aligned_cols=107 Identities=20% Similarity=0.211 Sum_probs=79.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHh----c-CCCcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILK----D-CDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~-~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
..+.+|||||||+|..+..+++. +..+|+++|+++.+++.+++++.. . ..++ .++.+|+.+...... ++||+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v-~~~~~D~~~~l~~~~-~~fD~ 166 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRA-EIVIANGAEYVRKFK-NEFDV 166 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTE-EEEESCHHHHGGGCS-SCEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCce-EEEECcHHHHHhhCC-CCceE
Confidence 34689999999999999999776 345999999999999999998753 1 2467 899999876533222 37999
Q ss_pred EEechhhhccCH-H--HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILD-E--DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~-~--~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|++.....+... . ....+++.+++.|+|||.+++.
T Consensus 167 Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 167 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 998643221211 1 1157899999999999999985
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-13 Score=112.64 Aligned_cols=135 Identities=14% Similarity=0.042 Sum_probs=97.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC---CcceEEEccccccCCCC--CCCceeEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD---KLDKCYNVGIQDFKPED--LNIKYDVI 154 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~i~~~~~~d~~~~~~~~--~~~~~D~V 154 (256)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.++++....+. ++ .++.+|+.+..... ...+||+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v-~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKA-EFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGE-EEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccce-EEEECCHHHHHHHHHhcCCCCCEE
Confidence 36789999999999999999888766999999999999999999987654 56 89999988764321 01379999
Q ss_pred Eechh---------hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEE
Q psy8370 155 WIQWV---------LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 225 (256)
Q Consensus 155 ~~~~~---------l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~ 225 (256)
++.-- .... .....++..+.+.|+|||.++++......... ...+.+.+.+.++|+...
T Consensus 298 i~dpP~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~----------~~~~~i~~~~~~~g~~~~ 365 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGAC--RGYKDINMLAIQLLNEGGILLTFSCSGLMTSD----------LFQKIIADAAIDAGRDVQ 365 (396)
T ss_dssp EECCSSTTTCSSSSSCCC--THHHHHHHHHHHTEEEEEEEEEEECCTTCCHH----------HHHHHHHHHHHHHTCCEE
T ss_pred EECCCCCCCChhHHHHHH--HHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHH----------HHHHHHHHHHHHcCCeEE
Confidence 98621 1111 45568999999999999999997533222100 012344456777886554
Q ss_pred Ee
Q psy8370 226 KS 227 (256)
Q Consensus 226 ~~ 227 (256)
..
T Consensus 366 ~i 367 (396)
T 3c0k_A 366 FI 367 (396)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-13 Score=107.13 Aligned_cols=114 Identities=15% Similarity=0.084 Sum_probs=86.8
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEcccccc
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCYNVGIQDF 142 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~i~~~~~~d~~~~ 142 (256)
+++..+. ...++.+|||||||+|..+..++... ..+++++|+++.+++.+++++...+. ++ .++.+|+.+.
T Consensus 60 ~~l~~l~----~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i-~~~~gda~~~ 134 (237)
T 3c3y_A 60 QLMSFVL----KLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKI-NFIESDAMLA 134 (237)
T ss_dssp HHHHHHH----HHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGE-EEEESCHHHH
T ss_pred HHHHHHH----HhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-EEEEcCHHHH
Confidence 4555554 23467899999999999999998763 23999999999999999999987652 46 8899998765
Q ss_pred CCCC-----CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 143 KPED-----LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 143 ~~~~-----~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+.. ..++||+|++.... .....+++.+.+.|+|||.+++.+.
T Consensus 135 l~~l~~~~~~~~~fD~I~~d~~~-----~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 135 LDNLLQGQESEGSYDFGFVDADK-----PNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp HHHHHHSTTCTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred HHHHHhccCCCCCcCEEEECCch-----HHHHHHHHHHHHhcCCCeEEEEecC
Confidence 3211 01379999987432 3346799999999999999988643
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-12 Score=107.19 Aligned_cols=146 Identities=14% Similarity=0.131 Sum_probs=106.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEccccccCCCCCCCceeEEE
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD--KLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
..++.+|||+|||+|.++..++..+.. +|+|+|+|+.+++.|+++....+. ++ .+.++|+.+++.... +||+|+
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i-~~~~~D~~~~~~~~~--~fD~Ii 291 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKI-KFIQGDATQLSQYVD--SVDFAI 291 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGC-EEEECCGGGGGGTCS--CEEEEE
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCce-EEEECChhhCCcccC--CcCEEE
Confidence 567889999999999999999877653 899999999999999999987663 67 999999999876555 899999
Q ss_pred echhhhccC-----H-HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 156 IQWVLMFIL-----D-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 156 ~~~~l~~~~-----~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
++-.+..-. . +....+++.+.++| +|+.++++ .+.+.+.+.+.+.||++.+...
T Consensus 292 ~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~-------------------~~~~~~~~~~~~~G~~~~~~~~ 351 (373)
T 3tm4_A 292 SNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFIT-------------------TEKKAIEEAIAENGFEIIHHRV 351 (373)
T ss_dssp EECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEE-------------------SCHHHHHHHHHHTTEEEEEEEE
T ss_pred ECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEE-------------------CCHHHHHHHHHHcCCEEEEEEE
Confidence 974322110 1 22367889999999 44444442 1457788899999999876543
Q ss_pred ecCCCCcceeeeEEEeccCCC
Q psy8370 230 VTGMPKSLFKIYMFALKPNKD 250 (256)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~ 250 (256)
.. .......++..++..+
T Consensus 352 ~~---nG~l~~~~~~~~~~~~ 369 (373)
T 3tm4_A 352 IG---HGGLMVHLYVVKLEHH 369 (373)
T ss_dssp EE---ETTEEEEEEEEEETTC
T ss_pred EE---cCCEEEEEEeccCccC
Confidence 32 2333455555555544
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=108.67 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=81.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHh----c-CCCcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILK----D-CDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~-~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
..+.+|||||||+|.++..++.. +..+|++||+++.+++.|++++.. . ..++ .++.+|..+...... ++||+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv-~v~~~D~~~~l~~~~-~~fD~ 151 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRV-DVQVDDGFMHIAKSE-NQYDV 151 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTE-EEEESCSHHHHHTCC-SCEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCce-EEEECcHHHHHhhCC-CCeeE
Confidence 35789999999999999999776 445999999999999999998753 1 2467 899999877532211 37999
Q ss_pred EEechhhhccCHHH--HHHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|++....+..+... ...+++.+++.|+|||.+++.
T Consensus 152 Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~ 188 (275)
T 1iy9_A 152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (275)
T ss_dssp EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 99965432221110 146899999999999999985
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.9e-14 Score=112.85 Aligned_cols=106 Identities=23% Similarity=0.228 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHH----Hh-------cCCCcceEEEccccccCCCCCC
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEI----LK-------DCDKLDKCYNVGIQDFKPEDLN 148 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~----~~-------~~~~i~~~~~~d~~~~~~~~~~ 148 (256)
..+.+|||||||+|.++..++..+..+|++||+++.+++.|++++ .. ...++ .++.+|..+.....
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v-~~~~~D~~~~l~~~-- 150 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKA-KLTIGDGFEFIKNN-- 150 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSE-EEEESCHHHHHHHC--
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcE-EEEECchHHHhccc--
Confidence 456899999999999999998775459999999999999999987 11 12457 88999987653223
Q ss_pred CceeEEEechhhhccCHHH--HHHHHHHHhhhcCCCcEEEEE
Q psy8370 149 IKYDVIWIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~i~ 188 (256)
++||+|++....+.-+... ...+++.+++.|+|||.+++.
T Consensus 151 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 151 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 3799999875432211122 257899999999999999985
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.7e-13 Score=107.26 Aligned_cols=107 Identities=22% Similarity=0.229 Sum_probs=82.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc-----CCCcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
.++.+|||||||+|..+..+++.. ..+++++|+++.+++.+++++... ..++ .++.+|+.+...... ++||+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v-~~~~~D~~~~l~~~~-~~fD~ 154 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRV-NVFIEDASKFLENVT-NTYDV 154 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTE-EEEESCHHHHHHHCC-SCEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcE-EEEECChHHHHHhCC-CCceE
Confidence 456899999999999999997664 349999999999999999987642 2467 889999877543211 37999
Q ss_pred EEechhhhccCHHHH--HHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILDEDI--IKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~~~~--~~~l~~~~~~LkpgG~l~i~ 188 (256)
|++....+..+...+ ..+++.+++.|+|||.+++.
T Consensus 155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 191 (283)
T 2i7c_A 155 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 191 (283)
T ss_dssp EEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 999654332222222 57999999999999999985
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-13 Score=109.40 Aligned_cols=104 Identities=20% Similarity=0.176 Sum_probs=86.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
..++.+|||+|||+|.++..++..+ ..+|+++|+++.+++.++++....+ .++ .++.+|+.+. +... +||+|++
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~-~~~~~d~~~~-~~~~--~~D~Vi~ 192 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNV-IPILADNRDV-ELKD--VADRVIM 192 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSE-EEEESCGGGC-CCTT--CEEEEEE
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCE-EEEECChHHc-CccC--CceEEEE
Confidence 4678899999999999999998774 3499999999999999999998765 356 7999999888 4333 7999998
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEeccc
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 192 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 192 (256)
.... ....+++.+.+.|+|||.++++....
T Consensus 193 d~p~------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 193 GYVH------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp CCCS------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCcc------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 7543 23468889999999999999976544
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-13 Score=110.00 Aligned_cols=106 Identities=23% Similarity=0.234 Sum_probs=80.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc-----CCCcceEEEccccccCC-CCCCCcee
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKCYNVGIQDFKP-EDLNIKYD 152 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~i~~~~~~d~~~~~~-~~~~~~~D 152 (256)
.++.+|||||||+|..+..+++.. ..+|+++|+|+.+++.+++++... ..++ .++.+|+.+... ..+ +||
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v-~~~~~D~~~~l~~~~~--~fD 191 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRV-NVFIEDASKFLENVTN--TYD 191 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTE-EEEESCHHHHHHHCCS--CEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcE-EEEEccHHHHHhhcCC--Cce
Confidence 456899999999999999997663 459999999999999999987641 2467 899999876532 223 799
Q ss_pred EEEechhhhccCHHHH--HHHHHHHhhhcCCCcEEEEE
Q psy8370 153 VIWIQWVLMFILDEDI--IKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~--~~~l~~~~~~LkpgG~l~i~ 188 (256)
+|++...-..-+.... ..+++.+++.|+|||.+++.
T Consensus 192 vIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 229 (321)
T 2pt6_A 192 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 229 (321)
T ss_dssp EEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 9998643211111111 57999999999999999985
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.8e-13 Score=106.64 Aligned_cols=102 Identities=20% Similarity=0.169 Sum_probs=80.1
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEccccccCCCCCCCce---eEEE
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCYNVGIQDFKPEDLNIKY---DVIW 155 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~i~~~~~~d~~~~~~~~~~~~~---D~V~ 155 (256)
++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|+++....+. ++ .++++|+.+... + +| |+|+
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v-~~~~~D~~~~~~--~--~f~~~D~Iv 197 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRF-FVRKGEFLEPFK--E--KFASIEMIL 197 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSE-EEEESSTTGGGG--G--GTTTCCEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCce-EEEECcchhhcc--c--ccCCCCEEE
Confidence 5679999999999999999887223999999999999999999887653 47 899999987432 3 68 9999
Q ss_pred ec------------hhhhccCHHH------HHHHHHHHh-hhcCCCcEEEEE
Q psy8370 156 IQ------------WVLMFILDED------IIKFLNLCK-QILNKNGIIIIK 188 (256)
Q Consensus 156 ~~------------~~l~~~~~~~------~~~~l~~~~-~~LkpgG~l~i~ 188 (256)
++ .+. |.+... -..+++++. +.|+|||.+++.
T Consensus 198 snPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 198 SNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp ECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred EcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 97 122 222211 126899999 999999999985
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=108.61 Aligned_cols=128 Identities=12% Similarity=0.081 Sum_probs=95.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccc-cCCCCCCCceeEEEe
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQD-FKPEDLNIKYDVIWI 156 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~-~~~~~~~~~~D~V~~ 156 (256)
.++.+|||+| |+|.++..++..+. .+|+++|+|+.+++.++++....+. ++ .++.+|+.+ ++.... ++||+|++
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v-~~~~~D~~~~l~~~~~-~~fD~Vi~ 247 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDI-EIFTFDLRKPLPDYAL-HKFDTFIT 247 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCE-EEECCCTTSCCCTTTS-SCBSEEEE
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCE-EEEEChhhhhchhhcc-CCccEEEE
Confidence 3578999999 99999999988776 5999999999999999999887653 67 899999988 432111 37999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEE-EEEecccCCCCccccCCCCceeeCH---HHHHHHHH-hcCCcEEEe
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGII-IIKDNVASGVKNEYDDEDSSVVRSL---PQFCLLFS-KANLKCVKS 227 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l-~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~-~~gf~~~~~ 227 (256)
+..++.. ....+++++.++|+|||.+ ++..... ..+. .++.+.+. ..||.+...
T Consensus 248 ~~p~~~~---~~~~~l~~~~~~LkpgG~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~g~~~~~~ 306 (373)
T 2qm3_A 248 DPPETLE---AIRAFVGRGIATLKGPRCAGYFGITRR--------------ESSLDKWREIQKLLLNEFNVVITDI 306 (373)
T ss_dssp CCCSSHH---HHHHHHHHHHHTBCSTTCEEEEEECTT--------------TCCHHHHHHHHHHHHHTSCCEEEEE
T ss_pred CCCCchH---HHHHHHHHHHHHcccCCeEEEEEEecC--------------cCCHHHHHHHHHHHHHhcCcchhhh
Confidence 8654333 2468999999999999944 4432110 0123 45667777 889877543
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=110.75 Aligned_cols=157 Identities=13% Similarity=0.121 Sum_probs=107.8
Q ss_pred hHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccC
Q psy8370 65 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFK 143 (256)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~ 143 (256)
...++..++ ......++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++....+ .++ .++.+|+.+..
T Consensus 271 ~e~l~~~~~-~~l~~~~~~~VLDlgcG~G~~~~~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v-~f~~~d~~~~l 347 (433)
T 1uwv_A 271 NQKMVARAL-EWLDVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNV-TFYHENLEEDV 347 (433)
T ss_dssp HHHHHHHHH-HHHTCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSE-EEEECCTTSCC
T ss_pred HHHHHHHHH-HhhcCCCCCEEEECCCCCCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCce-EEEECCHHHHh
Confidence 344444444 33345677899999999999999998774 499999999999999999987765 356 89999998743
Q ss_pred CC--CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcC
Q psy8370 144 PE--DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 221 (256)
Q Consensus 144 ~~--~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 221 (256)
.. ...++||+|+++--.... ..+++.+. .++|++.++++.+... ...-...+.+.|
T Consensus 348 ~~~~~~~~~fD~Vv~dPPr~g~-----~~~~~~l~-~~~p~~ivyvsc~p~t----------------lard~~~l~~~G 405 (433)
T 1uwv_A 348 TKQPWAKNGFDKVLLDPARAGA-----AGVMQQII-KLEPIRIVYVSCNPAT----------------LARDSEALLKAG 405 (433)
T ss_dssp SSSGGGTTCCSEEEECCCTTCC-----HHHHHHHH-HHCCSEEEEEESCHHH----------------HHHHHHHHHHTT
T ss_pred hhhhhhcCCCCEEEECCCCccH-----HHHHHHHH-hcCCCeEEEEECChHH----------------HHhhHHHHHHCC
Confidence 21 111379999986322222 23444444 3789999988632221 111235667789
Q ss_pred CcEEEeeeecCCCCcceeeeEEEec
Q psy8370 222 LKCVKSEKVTGMPKSLFKIYMFALK 246 (256)
Q Consensus 222 f~~~~~~~~~~~~~~~~~~~~~~l~ 246 (256)
|.+........+|...+-..+..+.
T Consensus 406 y~~~~~~~~d~Fp~t~HvE~v~ll~ 430 (433)
T 1uwv_A 406 YTIARLAMLDMFPHTGHLESMVLFS 430 (433)
T ss_dssp CEEEEEEEECCSTTSSCCEEEEEEE
T ss_pred cEEEEEEEeccCCCCCeEEEEEEEE
Confidence 9999877777777766665555554
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.47 E-value=7.3e-13 Score=105.18 Aligned_cols=142 Identities=13% Similarity=0.105 Sum_probs=99.5
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFK 143 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~ 143 (256)
.++..++ ...++.+|||+|||+|..+..+++. +..+|+++|+++.+++.++++....+. ++ .+..+|+.++.
T Consensus 73 ~l~~~~l----~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v-~~~~~D~~~~~ 147 (274)
T 3ajd_A 73 MIPPIVL----NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNT-IIINADMRKYK 147 (274)
T ss_dssp GHHHHHH----CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSE-EEEESCHHHHH
T ss_pred HHHHHHh----CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcE-EEEeCChHhcc
Confidence 3455555 4567889999999999999999874 334899999999999999999887663 56 88999988765
Q ss_pred CC----CCCCceeEEEech------hhhcc---CH-------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCC
Q psy8370 144 PE----DLNIKYDVIWIQW------VLMFI---LD-------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDED 203 (256)
Q Consensus 144 ~~----~~~~~~D~V~~~~------~l~~~---~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 203 (256)
.. .. +||+|++.. ++... .. .....+++.+.+.|||||.++++.......
T Consensus 148 ~~~~~~~~--~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~-------- 217 (274)
T 3ajd_A 148 DYLLKNEI--FFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVE-------- 217 (274)
T ss_dssp HHHHHTTC--CEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTT--------
T ss_pred hhhhhccc--cCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChH--------
Confidence 41 33 799999872 22110 00 123579999999999999999864322111
Q ss_pred CceeeCHHHHHHHHHhc-CCcEEEe
Q psy8370 204 SSVVRSLPQFCLLFSKA-NLKCVKS 227 (256)
Q Consensus 204 ~~~~~~~~~~~~~l~~~-gf~~~~~ 227 (256)
.+.+.+..+++++ +|+++..
T Consensus 218 ----ene~~v~~~l~~~~~~~~~~~ 238 (274)
T 3ajd_A 218 ----ENEEVIKYILQKRNDVELIII 238 (274)
T ss_dssp ----SSHHHHHHHHHHCSSEEEECC
T ss_pred ----HhHHHHHHHHHhCCCcEEecC
Confidence 1245566666554 5766543
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.47 E-value=8.7e-14 Score=113.08 Aligned_cols=108 Identities=15% Similarity=0.199 Sum_probs=81.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc-----CCCcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
..+.+|||||||+|..+..++... ..+|+++|+|+.+++.|++++... ..++ .++.+|+.+.......++||+
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv-~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRV-NLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTE-EEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcE-EEEECCHHHHHHhccCCCccE
Confidence 456899999999999999997663 349999999999999999987642 2467 899999877532211137999
Q ss_pred EEechhhhccCHHH--HHHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|++.......+... ...+++.++++|+|||.+++.
T Consensus 198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99864321111111 357999999999999999985
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=8.1e-14 Score=112.03 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=80.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHh-----cCCCcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILK-----DCDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~-----~~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
..+.+|||||||+|.++..++... ..+|+++|+++.+++.|++++.. ...++ .++.+|..+...... ++||+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv-~v~~~Da~~~l~~~~-~~fD~ 171 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKL-TLHVGDGFEFMKQNQ-DAFDV 171 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTE-EEEESCHHHHHHTCS-SCEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcE-EEEECcHHHHHhhCC-CCceE
Confidence 456899999999999999997764 34999999999999999998764 13467 889999876432211 37999
Q ss_pred EEechhhhccCHH--HHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 154 IWIQWVLMFILDE--DIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 154 V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|++....+..+.. ....+++.++++|+|||.+++..
T Consensus 172 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 172 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 9986543322111 12468999999999999999853
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-13 Score=112.86 Aligned_cols=107 Identities=17% Similarity=0.114 Sum_probs=85.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEccccccCCCC--CCCceeEEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCYNVGIQDFKPED--LNIKYDVIW 155 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~i~~~~~~d~~~~~~~~--~~~~~D~V~ 155 (256)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.++++....+. ++ .++.+|+.+..+.. ..++||+|+
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v-~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRM-KFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGE-EEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccc-eEEECCHHHHHHHHHhhCCCCCEEE
Confidence 36789999999999999999887766999999999999999999987653 56 89999987764320 013799999
Q ss_pred ech---------hhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 156 IQW---------VLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 156 ~~~---------~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+.- +.+.. .....++..+.+.|+|||.++++.
T Consensus 295 ~dpP~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~lv~~~ 335 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGL--RAYFNVNFAGLNLVKDGGILVTCS 335 (396)
T ss_dssp ECCCCSCSSGGGHHHHH--HHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ECCCCCCCCHHHHHHHH--HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 852 12222 456679999999999999998874
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.8e-13 Score=103.72 Aligned_cols=102 Identities=17% Similarity=0.237 Sum_probs=82.9
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEE
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
....++.+|||+|||+|.++..++.. ..+++++|+++.+++.++++....+ .++ .+...|+.+...... .||+|
T Consensus 87 ~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~~--~~D~v 162 (248)
T 2yvl_A 87 LNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNV-KFFNVDFKDAEVPEG--IFHAA 162 (248)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTE-EEECSCTTTSCCCTT--CBSEE
T ss_pred cCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcE-EEEEcChhhcccCCC--cccEE
Confidence 35677889999999999999999888 4499999999999999999987654 356 888899887542333 79999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
++. .+ +...+++.+.+.|+|||.+++..
T Consensus 163 ~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~ 190 (248)
T 2yvl_A 163 FVD-----VR--EPWHYLEKVHKSLMEGAPVGFLL 190 (248)
T ss_dssp EEC-----SS--CGGGGHHHHHHHBCTTCEEEEEE
T ss_pred EEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence 984 21 22468899999999999999964
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-13 Score=106.85 Aligned_cols=107 Identities=16% Similarity=0.167 Sum_probs=82.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCC----CCCCCce
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKP----EDLNIKY 151 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~----~~~~~~~ 151 (256)
.++.+|||||||+|..+..++.... .+|+++|+++.+++.|++++...+ .++ .+..+|+.+..+ ....++|
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i-~~~~~d~~~~l~~l~~~~~~~~f 149 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKI-SLRLGPALATLEQLTQGKPLPEF 149 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGE-EEEESCHHHHHHHHHTSSSCCCE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-EEEEcCHHHHHHHHHhcCCCCCc
Confidence 3567999999999999999987632 389999999999999999987654 246 888998755321 1100379
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEeccc
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 192 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 192 (256)
|+|++.... .....+++.+.+.|+|||.+++.+...
T Consensus 150 D~V~~d~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 150 DLIFIDADK-----RNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp EEEEECSCG-----GGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred CEEEECCCH-----HHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 999987542 344679999999999999999865443
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.46 E-value=6.6e-14 Score=112.90 Aligned_cols=107 Identities=23% Similarity=0.295 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc-----CCCcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
..+.+|||||||+|..+..++... ..+|+++|+++.+++.|++++... ..++ .++.+|+.+...... ++||+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv-~~~~~D~~~~l~~~~-~~fD~ 184 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKL-DLFCGDGFEFLKNHK-NEFDV 184 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTE-EEECSCHHHHHHHCT-TCEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCE-EEEEChHHHHHHhcC-CCceE
Confidence 356899999999999999997663 349999999999999999987642 3467 889999876532211 37999
Q ss_pred EEechhhhccCHHHH--HHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILDEDI--IKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~~~~--~~~l~~~~~~LkpgG~l~i~ 188 (256)
|++...-+.-+...+ ..+++.+++.|+|||.+++.
T Consensus 185 Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~ 221 (314)
T 2b2c_A 185 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 221 (314)
T ss_dssp EEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEE
Confidence 998654222221222 57999999999999999985
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.4e-13 Score=108.66 Aligned_cols=145 Identities=12% Similarity=0.051 Sum_probs=83.3
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHh-cC-CeEEEEeCCHHHHHHHHHHHHhcC------------CCcceEEEccccccC
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDC------------DKLDKCYNVGIQDFK 143 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~------------~~i~~~~~~d~~~~~ 143 (256)
...++.+|||+|||+|.++..++.. +. .+|+++|+++.+++.|++++...+ .++ .+..+|+.+..
T Consensus 102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v-~~~~~d~~~~~ 180 (336)
T 2b25_A 102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV-DFIHKDISGAT 180 (336)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE-EEEESCTTCCC
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCce-EEEECChHHcc
Confidence 4677899999999999999999887 44 499999999999999999987521 356 88999998764
Q ss_pred CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc----------------cccCCCCcee
Q psy8370 144 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN----------------EYDDEDSSVV 207 (256)
Q Consensus 144 ~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----------------~~~~~~~~~~ 207 (256)
.....++||+|++..... ..+++++.++|+|||.+++.......... ........|.
T Consensus 181 ~~~~~~~fD~V~~~~~~~-------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~ 253 (336)
T 2b25_A 181 EDIKSLTFDAVALDMLNP-------HVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKISEVIVRDWL 253 (336)
T ss_dssp -------EEEEEECSSST-------TTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEEEEECCCCCCEE
T ss_pred cccCCCCeeEEEECCCCH-------HHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCcccceEEEecccceE
Confidence 211113799999853211 23789999999999999986542211000 0111112222
Q ss_pred e-----CHHHHHHHHHhcCCcEEEeeee
Q psy8370 208 R-----SLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 208 ~-----~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
. ...++.+.++++||+.++....
T Consensus 254 ~~~~~~~~g~y~~~l~~aGF~~v~~~~~ 281 (336)
T 2b25_A 254 VCLAKQKNGILAQKVESKINTDVQLDSQ 281 (336)
T ss_dssp ECC-------------------------
T ss_pred EEeecccccchhhhhccccccccccccc
Confidence 1 1237788899999988875543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-13 Score=112.17 Aligned_cols=106 Identities=22% Similarity=0.290 Sum_probs=82.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHh-----c-CCCcceEEEccccccCC-CCCCCce
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILK-----D-CDKLDKCYNVGIQDFKP-EDLNIKY 151 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~-----~-~~~i~~~~~~d~~~~~~-~~~~~~~ 151 (256)
..+.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++.. . ..++ .++.+|+.+... ..+ +|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v-~~~~~D~~~~l~~~~~--~f 152 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRA-VLVIDDARAYLERTEE--RY 152 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTE-EEEESCHHHHHHHCCC--CE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCce-EEEEchHHHHHHhcCC--Cc
Confidence 456899999999999999997763 44899999999999999998753 1 2467 899999877532 233 79
Q ss_pred eEEEechhhhc---cCHHH--HHHHHHHHhhhcCCCcEEEEE
Q psy8370 152 DVIWIQWVLMF---ILDED--IIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 152 D~V~~~~~l~~---~~~~~--~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+|++....+. -+... ...+++.++++|+|||.+++.
T Consensus 153 D~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 194 (314)
T 1uir_A 153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (314)
T ss_dssp EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred cEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence 99999865543 11111 257999999999999999985
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-12 Score=106.36 Aligned_cols=130 Identities=10% Similarity=0.042 Sum_probs=96.7
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcC------CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCcee
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHF------DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~------~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
..++.+|||+|||+|.++..++.... .+++|+|+++.+++.|+.+....+.++ .+..+|.....+ .. .||
T Consensus 128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~-~i~~~D~l~~~~-~~--~fD 203 (344)
T 2f8l_A 128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKM-TLLHQDGLANLL-VD--PVD 203 (344)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCC-EEEESCTTSCCC-CC--CEE
T ss_pred CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCc-eEEECCCCCccc-cC--Ccc
Confidence 34678999999999999998876642 489999999999999999987665556 888999766432 23 799
Q ss_pred EEEechhhhccCHHHH----------------HHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHH
Q psy8370 153 VIWIQWVLMFILDEDI----------------IKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLL 216 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (256)
+|+++-.+.+++.++. ..+++.+.+.|+|||.+++..+... +.. .....+++.
T Consensus 204 ~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~-----~~~------~~~~~ir~~ 272 (344)
T 2f8l_A 204 VVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAM-----FGT------SDFAKVDKF 272 (344)
T ss_dssp EEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGG-----GGS------TTHHHHHHH
T ss_pred EEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchh-----cCC------chHHHHHHH
Confidence 9999866655543321 2589999999999999988753221 111 124778888
Q ss_pred HHhcCCc
Q psy8370 217 FSKANLK 223 (256)
Q Consensus 217 l~~~gf~ 223 (256)
+.+.|+.
T Consensus 273 l~~~~~~ 279 (344)
T 2f8l_A 273 IKKNGHI 279 (344)
T ss_dssp HHHHEEE
T ss_pred HHhCCeE
Confidence 8888763
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-13 Score=104.93 Aligned_cols=115 Identities=17% Similarity=0.114 Sum_probs=86.7
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEcccccc
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDF 142 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~ 142 (256)
+++..+. ...++.+|||||||+|..+..++... ..+|+++|+++.+++.+++++...+ .++ .++.+|+.+.
T Consensus 59 ~~l~~l~----~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i-~~~~~d~~~~ 133 (229)
T 2avd_A 59 QLLANLA----RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKI-DLRLKPALET 133 (229)
T ss_dssp HHHHHHH----HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTE-EEEESCHHHH
T ss_pred HHHHHHH----HhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeE-EEEEcCHHHH
Confidence 4555544 23467899999999999999998753 2499999999999999999988665 356 8899988654
Q ss_pred CCCC--C--CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 143 KPED--L--NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 143 ~~~~--~--~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
.+.. . .++||+|++.... .....+++.+.+.|+|||.+++.+..
T Consensus 134 ~~~~~~~~~~~~~D~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~ 181 (229)
T 2avd_A 134 LDELLAAGEAGTFDVAVVDADK-----ENCSAYYERCLQLLRPGGILAVLRVL 181 (229)
T ss_dssp HHHHHHTTCTTCEEEEEECSCS-----TTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred HHHHHhcCCCCCccEEEECCCH-----HHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 2211 0 0379999996541 33457899999999999999986543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=98.17 Aligned_cols=143 Identities=15% Similarity=0.103 Sum_probs=91.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC---------CCC
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED---------LNI 149 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~---------~~~ 149 (256)
..++.+|||+|||+|.++..+++.+. +|+|+|+++.. ...++ .++++|+.+..... ..+
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~~~-~V~gvD~~~~~----------~~~~v-~~~~~D~~~~~~~~~~~~~~~~~~~~ 90 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSLAR-KIISIDLQEME----------EIAGV-RFIRCDIFKETIFDDIDRALREEGIE 90 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTTCS-EEEEEESSCCC----------CCTTC-EEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred CCCCCEEEEEeecCCHHHHHHHHcCC-cEEEEeccccc----------cCCCe-EEEEccccCHHHHHHHHHHhhcccCC
Confidence 46789999999999999999987744 99999999742 11356 88999988754210 002
Q ss_pred ceeEEEechhh--------hccC-HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhc
Q psy8370 150 KYDVIWIQWVL--------MFIL-DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA 220 (256)
Q Consensus 150 ~~D~V~~~~~l--------~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (256)
+||+|++.... .+.. ......+++.+.++|||||.|++...... ...++...++.
T Consensus 91 ~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~---------------~~~~~~~~l~~- 154 (191)
T 3dou_A 91 KVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD---------------MTNDFIAIWRK- 154 (191)
T ss_dssp SEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST---------------HHHHHHHHHGG-
T ss_pred cceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC---------------CHHHHHHHHHH-
Confidence 79999996421 1110 02345788999999999999998532111 12456666654
Q ss_pred CCcEEEeeeecCCCCcceeeeEEEeccCC
Q psy8370 221 NLKCVKSEKVTGMPKSLFKIYMFALKPNK 249 (256)
Q Consensus 221 gf~~~~~~~~~~~~~~~~~~~~~~l~~~~ 249 (256)
.|..+........-...-.+++.+..-+.
T Consensus 155 ~F~~v~~~kP~asR~~s~E~y~v~~~~~~ 183 (191)
T 3dou_A 155 NFSSYKISKPPASRGSSSEIYIMFFGFKA 183 (191)
T ss_dssp GEEEEEEECC------CCEEEEEEEEECC
T ss_pred hcCEEEEECCCCccCCCceEEEEEeeecc
Confidence 58777655433333344555666655444
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-13 Score=107.21 Aligned_cols=123 Identities=11% Similarity=0.113 Sum_probs=89.0
Q ss_pred CCCeEEEEcCCCCHhHHHHHHh----c-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc---CCCCCCCcee
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAK----H-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF---KPEDLNIKYD 152 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~----~-~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~---~~~~~~~~~D 152 (256)
++.+|||||||+|..+..++.. + ..+|+++|+++.+++.++. ...++ .++.+|+.+. +.... .+||
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~~~~v-~~~~gD~~~~~~l~~~~~-~~fD 154 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----DMENI-TLHQGDCSDLTTFEHLRE-MAHP 154 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----GCTTE-EEEECCSSCSGGGGGGSS-SCSS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----cCCce-EEEECcchhHHHHHhhcc-CCCC
Confidence 4679999999999999999876 2 2399999999999888872 22467 8999999874 32221 2699
Q ss_pred EEEechhhhccCHHHHHHHHHHHhh-hcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhc--CCcEE
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQ-ILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA--NLKCV 225 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~-~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gf~~~ 225 (256)
+|++... |. +...+++++.+ +|+|||.+++.+.. . . ......+.+.++++++ +|++.
T Consensus 155 ~I~~d~~--~~---~~~~~l~~~~r~~LkpGG~lv~~d~~-----~-~-----~~~~~~~~~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 155 LIFIDNA--HA---NTFNIMKWAVDHLLEEGDYFIIEDMI-----P-Y-----WYRYAPQLFSEYLGAFRDVLSMD 214 (236)
T ss_dssp EEEEESS--CS---SHHHHHHHHHHHTCCTTCEEEECSCH-----H-H-----HHHHCHHHHHHHHHTTTTTEEEE
T ss_pred EEEECCc--hH---hHHHHHHHHHHhhCCCCCEEEEEeCc-----c-c-----ccccCHHHHHHHHHhCcccEEEc
Confidence 9998665 22 34578999997 99999999996430 0 0 0012345778888887 57664
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-12 Score=105.08 Aligned_cols=122 Identities=19% Similarity=0.211 Sum_probs=93.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.++.+|||+|||+|.++.. +. +..+|+++|+|+.+++.++++....+ .++ .++.+|+.+.. . +||+|++.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v-~~~~~D~~~~~---~--~fD~Vi~d 265 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKI-IPILSDVREVD---V--KGNRVIMN 265 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTE-EEEESCGGGCC---C--CEEEEEEC
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-EEEECChHHhc---C--CCcEEEEC
Confidence 4678999999999999999 76 55699999999999999999998765 356 89999998876 4 79999986
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhc-CCcEEEeeeec
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA-NLKCVKSEKVT 231 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gf~~~~~~~~~ 231 (256)
--.. ...+++.+.+.|+|||.+++...... .+.+.+.+.++ |+++.......
T Consensus 266 pP~~------~~~~l~~~~~~L~~gG~l~~~~~~~~----------------~~~~~~~l~~~~~~~i~~~~~v~ 318 (336)
T 2yx1_A 266 LPKF------AHKFIDKALDIVEEGGVIHYYTIGKD----------------FDKAIKLFEKKCDCEVLEKRIVK 318 (336)
T ss_dssp CTTT------GGGGHHHHHHHEEEEEEEEEEEEESS----------------SHHHHHHHHHHSEEEEEEEEEEE
T ss_pred CcHh------HHHHHHHHHHHcCCCCEEEEEEeecC----------------chHHHHHHHHhcCCcEEEEEEEe
Confidence 3211 12688899999999999998643222 24555666666 77776555443
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-13 Score=112.15 Aligned_cols=101 Identities=16% Similarity=0.092 Sum_probs=77.5
Q ss_pred CCCCeEEEEcCC------CCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC------
Q psy8370 80 PGKTRVLDVGAG------IGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE------ 145 (256)
Q Consensus 80 ~~~~~vLDiG~G------~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~------ 145 (256)
.++.+||||||| +|..+..++... ..+|+|+|+|+.|. ....++ .++++|+.+++..
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~~~rI-~fv~GDa~dlpf~~~l~~~ 285 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VDELRI-RTIQGDQNDAEFLDRIARR 285 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GCBTTE-EEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hcCCCc-EEEEecccccchhhhhhcc
Confidence 457899999999 666666666553 23999999999973 122467 9999999887554
Q ss_pred CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCC
Q psy8370 146 DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 194 (256)
Q Consensus 146 ~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 194 (256)
.+ +||+|++..+ ++. .+....+++++++|||||.+++.+.....
T Consensus 286 d~--sFDlVisdgs-H~~--~d~~~aL~el~rvLKPGGvlVi~Dl~tsy 329 (419)
T 3sso_A 286 YG--PFDIVIDDGS-HIN--AHVRTSFAALFPHVRPGGLYVIEDMWTAY 329 (419)
T ss_dssp HC--CEEEEEECSC-CCH--HHHHHHHHHHGGGEEEEEEEEEECGGGGG
T ss_pred cC--CccEEEECCc-ccc--hhHHHHHHHHHHhcCCCeEEEEEeccccc
Confidence 34 8999998754 444 56678999999999999999998766443
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.5e-12 Score=106.94 Aligned_cols=144 Identities=10% Similarity=-0.001 Sum_probs=102.8
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFK 143 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~ 143 (256)
.++..++ ...++.+|||+|||+|..+..++.... .+|+++|+++.+++.++++....+. ++ .+..+|+.+.+
T Consensus 249 ~l~~~~l----~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v-~~~~~D~~~~~ 323 (450)
T 2yxl_A 249 AVASIVL----DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIV-KPLVKDARKAP 323 (450)
T ss_dssp HHHHHHH----CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSE-EEECSCTTCCS
T ss_pred HHHHHhc----CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcE-EEEEcChhhcc
Confidence 4455555 467788999999999999999987532 4899999999999999999987663 56 88999988775
Q ss_pred CCCCCCceeEEEec------hhhhccCHH-------H-------HHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCC
Q psy8370 144 PEDLNIKYDVIWIQ------WVLMFILDE-------D-------IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDED 203 (256)
Q Consensus 144 ~~~~~~~~D~V~~~------~~l~~~~~~-------~-------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 203 (256)
.....++||+|++. .++++.++. + ...+++.+.+.|||||.+++++......
T Consensus 324 ~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~-------- 395 (450)
T 2yxl_A 324 EIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKE-------- 395 (450)
T ss_dssp SSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG--------
T ss_pred hhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh--------
Confidence 32111379999963 333333221 1 1578999999999999999864322111
Q ss_pred CceeeCHHHHHHHHHhc-CCcEEEe
Q psy8370 204 SSVVRSLPQFCLLFSKA-NLKCVKS 227 (256)
Q Consensus 204 ~~~~~~~~~~~~~l~~~-gf~~~~~ 227 (256)
-+.+.+..+++++ ||+++..
T Consensus 396 ----ene~~v~~~l~~~~~~~~~~~ 416 (450)
T 2yxl_A 396 ----ENEKNIRWFLNVHPEFKLVPL 416 (450)
T ss_dssp ----GTHHHHHHHHHHCSSCEECCC
T ss_pred ----hHHHHHHHHHHhCCCCEEeec
Confidence 1345667778776 7877653
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.7e-13 Score=101.08 Aligned_cols=103 Identities=14% Similarity=0.043 Sum_probs=84.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.++.+|||||||+|.++..+. +...|+++|+++.+++.+++.....+.+. .+...|....++.. ++|+|++.-+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~-~~~v~D~~~~~~~~---~~DvvLllk~ 177 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWDF-TFALQDVLCAPPAE---AGDLALIFKL 177 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEE-EEEECCTTTSCCCC---BCSEEEEESC
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEeecccCCCCC---CcchHHHHHH
Confidence 568899999999999999875 44499999999999999999987766666 78888887666543 6999999999
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|++........+ ++...|+++|.++-.+
T Consensus 178 lh~LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 178 LPLLEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred HHHhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 9988654444444 7888999998888654
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-12 Score=109.60 Aligned_cols=143 Identities=12% Similarity=0.063 Sum_probs=102.7
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 143 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~ 143 (256)
..++..++ ...++.+|||+|||+|..+..+++... ..|+++|+|+.+++.+++++...+..+ .+..+|+.++.
T Consensus 90 s~l~a~~L----~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v-~~~~~Da~~l~ 164 (464)
T 3m6w_A 90 AQAVGVLL----DPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPL-AVTQAPPRALA 164 (464)
T ss_dssp THHHHHHH----CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCC-EEECSCHHHHH
T ss_pred HHHHHHhc----CcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeE-EEEECCHHHhh
Confidence 34555555 456789999999999999999987632 389999999999999999998877555 88999988765
Q ss_pred C-CCCCCceeEEEec------hhhhccC-------HH-------HHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCC
Q psy8370 144 P-EDLNIKYDVIWIQ------WVLMFIL-------DE-------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDE 202 (256)
Q Consensus 144 ~-~~~~~~~D~V~~~------~~l~~~~-------~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 202 (256)
. ... +||+|++. .++...+ .+ ....+++.+.++|||||.++.+.-.....
T Consensus 165 ~~~~~--~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~e------- 235 (464)
T 3m6w_A 165 EAFGT--YFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPE------- 235 (464)
T ss_dssp HHHCS--CEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG-------
T ss_pred hhccc--cCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchh-------
Confidence 3 233 79999963 1222111 11 12679999999999999999864221111
Q ss_pred CCceeeCHHHHHHHHHhc-CCcEEEe
Q psy8370 203 DSSVVRSLPQFCLLFSKA-NLKCVKS 227 (256)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~-gf~~~~~ 227 (256)
-+.+.+..+++++ +|+++..
T Consensus 236 -----Ene~vv~~~l~~~~~~~l~~~ 256 (464)
T 3m6w_A 236 -----ENEGVVAHFLKAHPEFRLEDA 256 (464)
T ss_dssp -----GTHHHHHHHHHHCTTEEEECC
T ss_pred -----cCHHHHHHHHHHCCCcEEEec
Confidence 2456667777777 5777654
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-11 Score=104.64 Aligned_cols=142 Identities=11% Similarity=0.066 Sum_probs=102.5
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 144 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~ 144 (256)
..++..++ ...++.+|||+|||+|..+..++..+. .+|+++|+++.+++.+++++...+.++ .+..+|+.+...
T Consensus 235 s~~~~~~l----~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~-~~~~~D~~~~~~ 309 (429)
T 1sqg_A 235 AQGCMTWL----APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDGRYPSQ 309 (429)
T ss_dssp HHTHHHHH----CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCTTCTHH
T ss_pred HHHHHHHc----CCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCe-EEEeCchhhchh
Confidence 34555555 457788999999999999999988764 499999999999999999998776667 889999887652
Q ss_pred --CCCCCceeEEEec------hhhhccCHH-------H-------HHHHHHHHhhhcCCCcEEEEEecccCCCCccccCC
Q psy8370 145 --EDLNIKYDVIWIQ------WVLMFILDE-------D-------IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDE 202 (256)
Q Consensus 145 --~~~~~~~D~V~~~------~~l~~~~~~-------~-------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 202 (256)
... +||+|++. .++++.++. + ...+++.+.+.|||||.+++++......
T Consensus 310 ~~~~~--~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~------- 380 (429)
T 1sqg_A 310 WCGEQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE------- 380 (429)
T ss_dssp HHTTC--CEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG-------
T ss_pred hcccC--CCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh-------
Confidence 223 79999963 233333221 1 1478999999999999999874222111
Q ss_pred CCceeeCHHHHHHHHHhc-CCcEEE
Q psy8370 203 DSSVVRSLPQFCLLFSKA-NLKCVK 226 (256)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~-gf~~~~ 226 (256)
.+...+...++++ +|+++.
T Consensus 381 -----ene~~v~~~l~~~~~~~~~~ 400 (429)
T 1sqg_A 381 -----ENSLQIKAFLQRTADAELCE 400 (429)
T ss_dssp -----GTHHHHHHHHHHCTTCEECS
T ss_pred -----hHHHHHHHHHHhCCCCEEeC
Confidence 1345566777765 577654
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-12 Score=109.18 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=84.0
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCC--CCCceeEEEec
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPED--LNIKYDVIWIQ 157 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~--~~~~~D~V~~~ 157 (256)
++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.++++....+ .++ .++.+|+.+..+.. ..++||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~-~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNV-RVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTE-EEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCc-eEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 6789999999999999999877 4599999999999999999988765 346 89999998764320 01379999985
Q ss_pred hh---------hhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 158 WV---------LMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 158 ~~---------l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
-- .... .....+++.+.+.|+|||.++++..
T Consensus 287 pP~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAY--RAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHH--HHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCChhHHHHHH--HHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 21 1111 4556799999999999999999753
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-12 Score=107.91 Aligned_cols=143 Identities=15% Similarity=0.052 Sum_probs=103.2
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEcccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDF 142 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~ 142 (256)
..++..++ ...++.+|||+|||+|..+..+++.. ...|+++|+++.+++.+++++...+ .++ .+...|..++
T Consensus 94 s~l~~~~L----~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv-~v~~~Da~~l 168 (456)
T 3m4x_A 94 AMIVGTAA----AAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNA-IVTNHAPAEL 168 (456)
T ss_dssp THHHHHHH----CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSE-EEECCCHHHH
T ss_pred HHHHHHHc----CCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCce-EEEeCCHHHh
Confidence 34555566 46778999999999999999998763 2389999999999999999998776 346 7888898776
Q ss_pred CC-CCCCCceeEEEech------hhhccCH--------------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccC
Q psy8370 143 KP-EDLNIKYDVIWIQW------VLMFILD--------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDD 201 (256)
Q Consensus 143 ~~-~~~~~~~D~V~~~~------~l~~~~~--------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~ 201 (256)
.. ... .||+|++.. ++..-++ .....+++.+.++|||||.++.+.-....
T Consensus 169 ~~~~~~--~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~------- 239 (456)
T 3m4x_A 169 VPHFSG--FFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP------- 239 (456)
T ss_dssp HHHHTT--CEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG-------
T ss_pred hhhccc--cCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc-------
Confidence 53 223 799999742 2221110 11237899999999999999986322211
Q ss_pred CCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 202 EDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
.-+.+.+..++++++|+++..
T Consensus 240 -----eEne~vv~~~l~~~~~~l~~~ 260 (456)
T 3m4x_A 240 -----EENEEIISWLVENYPVTIEEI 260 (456)
T ss_dssp -----GGTHHHHHHHHHHSSEEEECC
T ss_pred -----ccCHHHHHHHHHhCCCEEEec
Confidence 124567778888888877654
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.37 E-value=6.6e-13 Score=104.44 Aligned_cols=95 Identities=17% Similarity=0.167 Sum_probs=77.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-----cCCCcceEEEccccccCCCCCCCceeEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK-----DCDKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
..+.+|||||||+|.++..+++.+ .+|+++|+++.+++.|++++.. ...++ .++.+|..++. + +||+|
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv-~~~~~D~~~~~---~--~fD~I 143 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNF-THAKQLLDLDI---K--KYDLI 143 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTE-EEESSGGGSCC---C--CEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeE-EEEechHHHHH---h--hCCEE
Confidence 356899999999999999988775 7999999999999999887632 12467 88889988765 4 79999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
++.. +++ ..+++.+++.|+|||.+++.
T Consensus 144 i~d~-----~dp--~~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 144 FCLQ-----EPD--IHRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp EESS-----CCC--HHHHHHHHTTEEEEEEEEEE
T ss_pred EECC-----CCh--HHHHHHHHHhcCCCcEEEEE
Confidence 9872 112 24899999999999999985
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-11 Score=104.15 Aligned_cols=106 Identities=17% Similarity=0.136 Sum_probs=82.8
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCC-CCCCCceeEEEe
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKP-EDLNIKYDVIWI 156 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~-~~~~~~~D~V~~ 156 (256)
++.+|||+|||+|..+..+++.. ...|+++|+++.+++.+++++...+ .++ .+...|+.++.. ... .||.|++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv-~~~~~D~~~~~~~~~~--~fD~Il~ 193 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNV-ALTHFDGRVFGAAVPE--MFDAILL 193 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSE-EEECCCSTTHHHHSTT--CEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcE-EEEeCCHHHhhhhccc--cCCEEEE
Confidence 78899999999999999998763 2389999999999999999998766 356 888999887653 333 7999997
Q ss_pred c------hhhhccC-------HH-------HHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 157 Q------WVLMFIL-------DE-------DIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 157 ~------~~l~~~~-------~~-------~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
. .++...+ .+ ....+++++.++|||||.++.++
T Consensus 194 D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysT 246 (479)
T 2frx_A 194 DAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST 246 (479)
T ss_dssp ECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3 2232221 11 12468999999999999999864
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.5e-12 Score=101.08 Aligned_cols=110 Identities=16% Similarity=0.182 Sum_probs=79.8
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCC
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~ 146 (256)
+..++ ......++.+|||||||+|.++..++..+. +|+++|+|+.+++.++++....+ .++ .++.+|+.+.+..
T Consensus 17 ~~~i~-~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v-~~~~~D~~~~~~~- 92 (285)
T 1zq9_A 17 INSII-DKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKL-QVLVGDVLKTDLP- 92 (285)
T ss_dssp HHHHH-HHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGE-EEEESCTTTSCCC-
T ss_pred HHHHH-HhcCCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCce-EEEEcceecccch-
Confidence 44444 334567788999999999999999988876 89999999999999999886543 356 8899999876432
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHH--------------HH--hhhcCCCcEEE
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLN--------------LC--KQILNKNGIII 186 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~--------------~~--~~~LkpgG~l~ 186 (256)
.||+|+++..++..+ +....+++ ++ +++++|||.++
T Consensus 93 ---~fD~vv~nlpy~~~~-~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 93 ---FFDTCVANLPYQISS-PFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp ---CCSEEEEECCGGGHH-HHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred ---hhcEEEEecCcccch-HHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 699999975444332 22222332 22 36889999764
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-10 Score=97.43 Aligned_cols=135 Identities=11% Similarity=0.112 Sum_probs=95.2
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
..++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++....+..+ .++.+|+.+..+. +||+|+++-
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~~~-~V~gvD~s~~ai~~A~~n~~~ngl~v-~~~~~d~~~~~~~----~fD~Vv~dP 361 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKRGF-NVKGFDSNEFAIEMARRNVEINNVDA-EFEVASDREVSVK----GFDTVIVDP 361 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCE-EEEECCTTTCCCT----TCSEEEECC
T ss_pred cCCCCEEEEeeccchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCcE-EEEECChHHcCcc----CCCEEEEcC
Confidence 35678999999999999999987654 99999999999999999988665445 8999999887532 699999964
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCcce
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLF 238 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~ 238 (256)
--.... ..+++.+. .|+|+|.++++.+. ..+.+-+....|++........+|...+
T Consensus 362 Pr~g~~----~~~~~~l~-~l~p~givyvsc~p-------------------~tlarDl~~l~y~l~~~~~~DmFP~T~H 417 (425)
T 2jjq_A 362 PRAGLH----PRLVKRLN-REKPGVIVYVSCNP-------------------ETFARDVKMLDYRIDEIVALDMFPHTPH 417 (425)
T ss_dssp CTTCSC----HHHHHHHH-HHCCSEEEEEESCH-------------------HHHHHHHHHSSCCEEEEEEECCSTTSSC
T ss_pred CccchH----HHHHHHHH-hcCCCcEEEEECCh-------------------HHHHhHHhhCeEEEEEEEEECcCCCCce
Confidence 322221 13455554 48999999997321 2222222222288887776666776555
Q ss_pred eeeEE
Q psy8370 239 KIYMF 243 (256)
Q Consensus 239 ~~~~~ 243 (256)
-..+.
T Consensus 418 vE~v~ 422 (425)
T 2jjq_A 418 VELVA 422 (425)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 44443
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-13 Score=106.70 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=75.9
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh---cCCCcceEE--EccccccC
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK---DCDKLDKCY--NVGIQDFK 143 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~i~~~~--~~d~~~~~ 143 (256)
+.++. +.....++.+|||+|||+|.++..+++. .+|+|+|+++ |...+++.... .+.++ .++ .+|+.+++
T Consensus 71 L~~i~-~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v-~~~~~~~D~~~l~ 145 (276)
T 2wa2_A 71 LAWID-ERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNL-ITFKSKVDVTKME 145 (276)
T ss_dssp HHHHH-HTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGG-EEEECSCCGGGCC
T ss_pred HHHHH-HcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCe-EEEeccCcHhhCC
Confidence 44444 2234567889999999999999998877 4899999998 53332221000 01145 778 88988865
Q ss_pred CCCCCCceeEEEechhhhccCHH---HH--HHHHHHHhhhcCCCc--EEEEEe
Q psy8370 144 PEDLNIKYDVIWIQWVLMFILDE---DI--IKFLNLCKQILNKNG--IIIIKD 189 (256)
Q Consensus 144 ~~~~~~~~D~V~~~~~l~~~~~~---~~--~~~l~~~~~~LkpgG--~l~i~~ 189 (256)
.. +||+|+|..+ ++.... .. ..+++.+.++|+||| .|++..
T Consensus 146 --~~--~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~ 193 (276)
T 2wa2_A 146 --PF--QADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV 193 (276)
T ss_dssp --CC--CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred --CC--CcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 33 7999999876 333211 11 137899999999999 888853
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-11 Score=90.77 Aligned_cols=99 Identities=21% Similarity=0.189 Sum_probs=71.0
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHh-cC---------CeEEEEeCCHHHHHHHHHHHHhcCCCcceEE-EccccccCC--
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAK-HF---------DKIDLLEQSSKFIEQAKEEILKDCDKLDKCY-NVGIQDFKP-- 144 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~---------~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~-~~d~~~~~~-- 144 (256)
...++.+|||+|||+|.++..++.. +. .+|+++|+|+.. ...++ .+. .+|+.+...
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------~~~~~-~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 19 ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------PLEGA-TFLCPADVTDPRTSQ 87 (196)
T ss_dssp CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------CCTTC-EEECSCCTTSHHHHH
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------cCCCC-eEEEeccCCCHHHHH
Confidence 3567889999999999999999887 32 589999999842 01245 777 788765431
Q ss_pred ------CCCCCceeEEEechhhhc----cCHH-----HHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 145 ------EDLNIKYDVIWIQWVLMF----ILDE-----DIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 145 ------~~~~~~~D~V~~~~~l~~----~~~~-----~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
... +||+|++...++. ..+. ....+++++.++|+|||.+++..
T Consensus 88 ~~~~~~~~~--~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (196)
T 2nyu_A 88 RILEVLPGR--RADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT 145 (196)
T ss_dssp HHHHHSGGG--CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHhcCCC--CCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 123 7999998654332 2111 11478999999999999999864
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.31 E-value=4e-13 Score=105.81 Aligned_cols=104 Identities=20% Similarity=0.093 Sum_probs=72.6
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh---cCCCcceEE--EccccccCCCCCCCce
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK---DCDKLDKCY--NVGIQDFKPEDLNIKY 151 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~i~~~~--~~d~~~~~~~~~~~~~ 151 (256)
....++.+|||+|||+|.++..+++. .+|+|+|+++ |+..+++.... .+.++ .++ ++|+.+++ .. +|
T Consensus 70 ~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v-~~~~~~~D~~~l~--~~--~f 141 (265)
T 2oxt_A 70 GYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNI-VKFKSRVDIHTLP--VE--RT 141 (265)
T ss_dssp TSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGG-EEEECSCCTTTSC--CC--CC
T ss_pred CCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCe-EEEecccCHhHCC--CC--CC
Confidence 34567889999999999999998777 4899999998 53222211000 01145 777 88988865 33 79
Q ss_pred eEEEechhhhccCHH---HH--HHHHHHHhhhcCCCc--EEEEEe
Q psy8370 152 DVIWIQWVLMFILDE---DI--IKFLNLCKQILNKNG--IIIIKD 189 (256)
Q Consensus 152 D~V~~~~~l~~~~~~---~~--~~~l~~~~~~LkpgG--~l~i~~ 189 (256)
|+|+|..+ ++.... .. ..+++.+.++|+||| .|++..
T Consensus 142 D~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv 185 (265)
T 2oxt_A 142 DVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV 185 (265)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 99999866 333211 11 137899999999999 998854
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=102.07 Aligned_cols=158 Identities=14% Similarity=0.151 Sum_probs=101.1
Q ss_pred chhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccc
Q psy8370 61 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGI 139 (256)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~ 139 (256)
+......+...+. ...... +.+|||+|||+|.++..++. +..+|+|+|+|+.+++.|+++....+ .++ .++.+|+
T Consensus 195 n~~~~~~l~~~~~-~~~~~~-~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v-~~~~~d~ 270 (369)
T 3bt7_A 195 NAAMNIQMLEWAL-DVTKGS-KGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAAQYNIAANHIDNV-QIIRMAA 270 (369)
T ss_dssp BHHHHHHHHHHHH-HHTTTC-CSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHHHHHHHHHHHTTCCSE-EEECCCS
T ss_pred CHHHHHHHHHHHH-HHhhcC-CCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHHcCCCce-EEEECCH
Confidence 3333344555554 333333 57899999999999998865 55599999999999999999988765 356 8999998
Q ss_pred cccCCC--CC------------CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCc
Q psy8370 140 QDFKPE--DL------------NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSS 205 (256)
Q Consensus 140 ~~~~~~--~~------------~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 205 (256)
.+.... .. ..+||+|++.---. .+.+++.+.|+++|.++....... .
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~--------g~~~~~~~~l~~~g~ivyvsc~p~-----------t 331 (369)
T 3bt7_A 271 EEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS--------GLDSETEKMVQAYPRILYISCNPE-----------T 331 (369)
T ss_dssp HHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT--------CCCHHHHHHHTTSSEEEEEESCHH-----------H
T ss_pred HHHHHHHhhccccccccccccccCCCCEEEECcCcc--------ccHHHHHHHHhCCCEEEEEECCHH-----------H
Confidence 765321 10 02699999752111 123445566667777776521110 0
Q ss_pred eeeCHHHHHHHHHhcCCcEEEeeeecCCCCcceeeeEEEec
Q psy8370 206 VVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246 (256)
Q Consensus 206 ~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~l~ 246 (256)
-..++..+ .+ ||++........+|...+-..+..+.
T Consensus 332 ---~ard~~~l-~~-~y~~~~~~~~D~FP~T~HvE~v~ll~ 367 (369)
T 3bt7_A 332 ---LCKNLETL-SQ-THKVERLALFDQFPYTHHMQCGVLLT 367 (369)
T ss_dssp ---HHHHHHHH-HH-HEEEEEEEEECCSTTSSCCEEEEEEE
T ss_pred ---HHHHHHHH-hh-CcEEEEEEeeccCCCCCcEEEEEEEE
Confidence 12334333 32 79988887777778766665555543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-11 Score=98.55 Aligned_cols=99 Identities=22% Similarity=0.306 Sum_probs=71.7
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
...++.+|||||||+|.++..++..+. +|+|+|+++.+++.++++....+ .++ .++.+|+.+.+. . +||+|++
T Consensus 39 ~~~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~~~v-~~~~~D~~~~~~--~--~~D~Vv~ 112 (299)
T 2h1r_A 39 KIKSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGYNNL-EVYEGDAIKTVF--P--KFDVCTA 112 (299)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTCCCE-EC----CCSSCC--C--CCSEEEE
T ss_pred CCCCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCCce-EEEECchhhCCc--c--cCCEEEE
Confidence 456788999999999999999987765 99999999999999999886544 356 889999887653 2 6999999
Q ss_pred chhhhccCHHHHHHHH---------------HHHhhhcCCCc
Q psy8370 157 QWVLMFILDEDIIKFL---------------NLCKQILNKNG 183 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l---------------~~~~~~LkpgG 183 (256)
+...+ +..+....++ +.+.++++++|
T Consensus 113 n~py~-~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 113 NIPYK-ISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp ECCGG-GHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred cCCcc-cccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 75444 3223333444 34667787766
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.29 E-value=3.5e-11 Score=93.73 Aligned_cols=84 Identities=15% Similarity=0.290 Sum_probs=65.2
Q ss_pred HHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC
Q psy8370 68 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL 147 (256)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~ 147 (256)
.+..++ ......++.+|||||||+|.++..++..+. +|+|+|+|+.+++.+++++... .++ .++.+|+.+.+...+
T Consensus 18 ~~~~i~-~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~-~~v-~~~~~D~~~~~~~~~ 93 (244)
T 1qam_A 18 NIDKIM-TNIRLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDH-DNF-QVLNKDILQFKFPKN 93 (244)
T ss_dssp HHHHHH-TTCCCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTC-CSE-EEECCCGGGCCCCSS
T ss_pred HHHHHH-HhCCCCCCCEEEEEeCCchHHHHHHHHcCC-eEEEEECCHHHHHHHHHhhccC-CCe-EEEEChHHhCCcccC
Confidence 455555 555667788999999999999999988874 9999999999999999987643 367 899999988875432
Q ss_pred CCceeEEEec
Q psy8370 148 NIKYDVIWIQ 157 (256)
Q Consensus 148 ~~~~D~V~~~ 157 (256)
..| .|+++
T Consensus 94 -~~~-~vv~n 101 (244)
T 1qam_A 94 -QSY-KIFGN 101 (244)
T ss_dssp -CCC-EEEEE
T ss_pred -CCe-EEEEe
Confidence 245 34444
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=7.3e-11 Score=94.01 Aligned_cols=87 Identities=13% Similarity=0.140 Sum_probs=70.5
Q ss_pred HHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC
Q psy8370 68 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL 147 (256)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~ 147 (256)
.+.+++ +.....++.+|||||||+|.++..++..+. +|+++|+++.+++.+++++... .++ .++.+|+.+.+....
T Consensus 38 i~~~Iv-~~l~~~~~~~VLEIG~G~G~lT~~La~~~~-~V~aVEid~~li~~a~~~~~~~-~~v-~vi~gD~l~~~~~~~ 113 (295)
T 3gru_A 38 FVNKAV-ESANLTKDDVVLEIGLGKGILTEELAKNAK-KVYVIEIDKSLEPYANKLKELY-NNI-EIIWGDALKVDLNKL 113 (295)
T ss_dssp HHHHHH-HHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCGGGHHHHHHHHHHC-SSE-EEEESCTTTSCGGGS
T ss_pred HHHHHH-HhcCCCCcCEEEEECCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhccC-CCe-EEEECchhhCCcccC
Confidence 344444 444567889999999999999999988864 9999999999999999998743 367 899999998776555
Q ss_pred CCceeEEEechhh
Q psy8370 148 NIKYDVIWIQWVL 160 (256)
Q Consensus 148 ~~~~D~V~~~~~l 160 (256)
+||+|+++..+
T Consensus 114 --~fD~Iv~NlPy 124 (295)
T 3gru_A 114 --DFNKVVANLPY 124 (295)
T ss_dssp --CCSEEEEECCG
T ss_pred --CccEEEEeCcc
Confidence 79999987443
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=4.3e-11 Score=100.75 Aligned_cols=122 Identities=13% Similarity=0.142 Sum_probs=86.7
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...++.+|||+|||+|.++..++++. ..+++|+|+++.+++.| .++ .++++|+.+..+. . +||+|+
T Consensus 36 ~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------~~~-~~~~~D~~~~~~~-~--~fD~Ii 103 (421)
T 2ih2_A 36 EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------PWA-EGILADFLLWEPG-E--AFDLIL 103 (421)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------TTE-EEEESCGGGCCCS-S--CEEEEE
T ss_pred ccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------CCC-cEEeCChhhcCcc-C--CCCEEE
Confidence 33456799999999999999998752 34999999999998877 245 8899999877543 3 799999
Q ss_pred echhh---h-------ccCHHH-----------------HHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceee
Q psy8370 156 IQWVL---M-------FILDED-----------------IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVR 208 (256)
Q Consensus 156 ~~~~l---~-------~~~~~~-----------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 208 (256)
++--+ . +++.+. ...+++.+.+.|+|||.+++..+..... ..
T Consensus 104 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~-----------~~ 172 (421)
T 2ih2_A 104 GNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLV-----------LE 172 (421)
T ss_dssp ECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGT-----------CG
T ss_pred ECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhc-----------Cc
Confidence 96111 1 122221 2367999999999999998874322110 01
Q ss_pred CHHHHHHHHHhcCC
Q psy8370 209 SLPQFCLLFSKANL 222 (256)
Q Consensus 209 ~~~~~~~~l~~~gf 222 (256)
..+.+++.+.+.|+
T Consensus 173 ~~~~lr~~l~~~~~ 186 (421)
T 2ih2_A 173 DFALLREFLAREGK 186 (421)
T ss_dssp GGHHHHHHHHHHSE
T ss_pred cHHHHHHHHHhcCC
Confidence 24678888888887
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.6e-12 Score=102.36 Aligned_cols=103 Identities=15% Similarity=0.131 Sum_probs=70.3
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeC----CHHHHHHHHHHHHhcC-CCcceEEEc-cccccCCCCCCCce
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQ----SSKFIEQAKEEILKDC-DKLDKCYNV-GIQDFKPEDLNIKY 151 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~----s~~~~~~a~~~~~~~~-~~i~~~~~~-d~~~~~~~~~~~~~ 151 (256)
...++.+|||+|||+|.++..+++. .+|+|+|+ ++.+++.+. ....+ .++ .+..+ |+.+++ .. +|
T Consensus 79 ~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v-~~~~~~D~~~l~--~~--~f 149 (305)
T 2p41_A 79 LVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGWNLV-RLQSGVDVFFIP--PE--RC 149 (305)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTGGGE-EEECSCCTTTSC--CC--CC
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCCCCe-EEEeccccccCC--cC--CC
Confidence 3566789999999999999999877 38999999 554332111 01111 235 77887 877664 23 79
Q ss_pred eEEEechhhh---ccCHHH-HHHHHHHHhhhcCCCcEEEEEe
Q psy8370 152 DVIWIQWVLM---FILDED-IIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 152 D~V~~~~~l~---~~~~~~-~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|+|+|..+++ +..+.. ...+++.+.++|||||.|++..
T Consensus 150 D~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 150 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 9999976643 221111 1257889999999999998853
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.22 E-value=4.5e-11 Score=101.24 Aligned_cols=116 Identities=12% Similarity=0.022 Sum_probs=85.6
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--------------CCeEEEEeCCHHHHHHHHHHHHhcCC--
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--------------FDKIDLLEQSSKFIEQAKEEILKDCD-- 129 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--------------~~~v~~vD~s~~~~~~a~~~~~~~~~-- 129 (256)
.+++.+++ ...++.+|||+|||+|.++..++... ..+++|+|+++.+++.|+.++..++.
T Consensus 160 ~~~mv~~l----~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~ 235 (445)
T 2okc_A 160 IQAMVDCI----NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT 235 (445)
T ss_dssp HHHHHHHH----CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHh----CCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence 34444444 45667899999999999998876541 23799999999999999998876653
Q ss_pred -CcceEEEccccccCCCCCCCceeEEEechhhhccCH---------------HHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 130 -KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD---------------EDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 130 -~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~---------------~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+. .+.++|....+.. . .||+|+++--+..... ..-..+++++.+.|+|||.+.++.
T Consensus 236 ~~~-~i~~gD~l~~~~~-~--~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 236 DRS-PIVCEDSLEKEPS-T--LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp SCC-SEEECCTTTSCCS-S--CEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCC-CEeeCCCCCCccc-C--CcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 45 7889998766543 2 6999999844332211 112368999999999999998864
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-10 Score=92.27 Aligned_cols=119 Identities=15% Similarity=0.022 Sum_probs=82.9
Q ss_pred CCCCCCCeEEEEcCCC------CHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceE-EEccccccCCCCC
Q psy8370 77 KSDPGKTRVLDVGAGI------GRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKC-YNVGIQDFKPEDL 147 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~------G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~-~~~d~~~~~~~~~ 147 (256)
....++.+|||+|||+ |. ..+++... .+|+|+|+++. + .++ .+ +++|+.+.+.. .
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-----------~~v-~~~i~gD~~~~~~~-~ 122 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-----------SDA-DSTLIGDCATVHTA-N 122 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-----------CSS-SEEEESCGGGCCCS-S
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-----------CCC-EEEEECccccCCcc-C
Confidence 4567788999999955 65 33333322 38999999997 1 256 88 99999887543 3
Q ss_pred CCceeEEEechhhh--------ccC-HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHH
Q psy8370 148 NIKYDVIWIQWVLM--------FIL-DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFS 218 (256)
Q Consensus 148 ~~~~D~V~~~~~l~--------~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 218 (256)
+||+|+++...+ +.. ......+++++.++|||||.|++..... ...+++.++++
T Consensus 123 --~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~---------------~~~~~l~~~l~ 185 (290)
T 2xyq_A 123 --KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH---------------SWNADLYKLMG 185 (290)
T ss_dssp --CEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS---------------SCCHHHHHHHT
T ss_pred --cccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc---------------CCHHHHHHHHH
Confidence 799999964321 111 1234579999999999999999853211 12357888999
Q ss_pred hcCCcEEEee
Q psy8370 219 KANLKCVKSE 228 (256)
Q Consensus 219 ~~gf~~~~~~ 228 (256)
+.||..+...
T Consensus 186 ~~GF~~v~~~ 195 (290)
T 2xyq_A 186 HFSWWTAFVT 195 (290)
T ss_dssp TEEEEEEEEE
T ss_pred HcCCcEEEEE
Confidence 9999776554
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.3e-10 Score=93.39 Aligned_cols=110 Identities=15% Similarity=0.078 Sum_probs=81.5
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcC---------------------------------------CeEEEEeCCHH
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHF---------------------------------------DKIDLLEQSSK 115 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~---------------------------------------~~v~~vD~s~~ 115 (256)
......++..|||++||+|.++..++..+. .+|+|+|+++.
T Consensus 195 ~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ 274 (393)
T 3k0b_A 195 LLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDAR 274 (393)
T ss_dssp HHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHH
T ss_pred HHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHH
Confidence 455667789999999999999988876543 24999999999
Q ss_pred HHHHHHHHHHhcCC--CcceEEEccccccCCCCCCCceeEEEec--hhhhccCHHHHHHHHHHHhhhcCC--CcEEEEE
Q psy8370 116 FIEQAKEEILKDCD--KLDKCYNVGIQDFKPEDLNIKYDVIWIQ--WVLMFILDEDIIKFLNLCKQILNK--NGIIIIK 188 (256)
Q Consensus 116 ~~~~a~~~~~~~~~--~i~~~~~~d~~~~~~~~~~~~~D~V~~~--~~l~~~~~~~~~~~l~~~~~~Lkp--gG~l~i~ 188 (256)
|++.|+++....+. .+ .+.++|+.+++.. . +||+|+++ +....-...++..+.+.+.+.|++ ||.+++.
T Consensus 275 al~~Ar~Na~~~gl~~~I-~~~~~D~~~~~~~-~--~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ii 349 (393)
T 3k0b_A 275 LIEIAKQNAVEAGLGDLI-TFRQLQVADFQTE-D--EYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVL 349 (393)
T ss_dssp HHHHHHHHHHHTTCTTCS-EEEECCGGGCCCC-C--CSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEE
T ss_pred HHHHHHHHHHHcCCCCce-EEEECChHhCCCC-C--CCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99999999987662 46 8999999988654 3 69999998 221111113445566666666655 8877774
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-09 Score=90.69 Aligned_cols=110 Identities=15% Similarity=0.081 Sum_probs=84.9
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcC---------------------------------------CeEEEEeCCHH
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHF---------------------------------------DKIDLLEQSSK 115 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~---------------------------------------~~v~~vD~s~~ 115 (256)
......++..++|.+||+|.++..++..+. .+++|+|+++.
T Consensus 188 ~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~ 267 (384)
T 3ldg_A 188 LLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGR 267 (384)
T ss_dssp HHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHH
T ss_pred HHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHH
Confidence 555677889999999999999998876543 14999999999
Q ss_pred HHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEec--hhhhccCHHHHHHHHHHHhhhcCC--CcEEEEE
Q psy8370 116 FIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ--WVLMFILDEDIIKFLNLCKQILNK--NGIIIIK 188 (256)
Q Consensus 116 ~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~--~~l~~~~~~~~~~~l~~~~~~Lkp--gG~l~i~ 188 (256)
|++.|+++....+ ..+ .+.+.|+.++... . +||+|+++ +....-...++..+.+.+.+.|++ ||.+++.
T Consensus 268 al~~Ar~Na~~~gl~~~I-~~~~~D~~~l~~~-~--~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ii 342 (384)
T 3ldg_A 268 MVEIARKNAREVGLEDVV-KLKQMRLQDFKTN-K--INGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFIL 342 (384)
T ss_dssp HHHHHHHHHHHTTCTTTE-EEEECCGGGCCCC-C--CSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred HHHHHHHHHHHcCCCCce-EEEECChHHCCcc-C--CcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 9999999998776 246 8999999988654 3 69999998 332222335666777777777776 8877775
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.3e-10 Score=92.65 Aligned_cols=110 Identities=14% Similarity=-0.007 Sum_probs=83.3
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcC---------------------------------------CeEEEEeCCHH
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHF---------------------------------------DKIDLLEQSSK 115 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~---------------------------------------~~v~~vD~s~~ 115 (256)
......++.+|||+|||+|.++..++..+. .+|+|+|+++.
T Consensus 189 ~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ 268 (385)
T 3ldu_A 189 YLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEE 268 (385)
T ss_dssp HTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHH
T ss_pred HhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHH
Confidence 555677889999999999999999876642 26999999999
Q ss_pred HHHHHHHHHHhcCC--CcceEEEccccccCCCCCCCceeEEEechhhh-ccC-HHHHHHHHHHHhhhcCC--CcEEEEE
Q psy8370 116 FIEQAKEEILKDCD--KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM-FIL-DEDIIKFLNLCKQILNK--NGIIIIK 188 (256)
Q Consensus 116 ~~~~a~~~~~~~~~--~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~-~~~-~~~~~~~l~~~~~~Lkp--gG~l~i~ 188 (256)
+++.|+.+....+. .+ .+.+.|+.++... . +||+|+++--+. .+. .+++..+.+.+.+.|++ |+.+++.
T Consensus 269 ai~~Ar~Na~~~gl~~~i-~~~~~D~~~l~~~-~--~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ii 343 (385)
T 3ldu_A 269 SIDIARENAEIAGVDEYI-EFNVGDATQFKSE-D--EFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLI 343 (385)
T ss_dssp HHHHHHHHHHHHTCGGGE-EEEECCGGGCCCS-C--BSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEE
T ss_pred HHHHHHHHHHHcCCCCce-EEEECChhhcCcC-C--CCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 99999999987663 46 8999999988653 3 699999973321 221 24556677777777766 7777764
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-10 Score=94.27 Aligned_cols=101 Identities=14% Similarity=0.124 Sum_probs=79.7
Q ss_pred CCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhc---------------CC-CcceEEEccccccC
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKD---------------CD-KLDKCYNVGIQDFK 143 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---------------~~-~i~~~~~~d~~~~~ 143 (256)
++.+|||+|||+|..+..++.+ +..+|+++|+++.+++.++++.... +. ++ .++++|+.+..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i-~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTI-VINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEE-EEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCce-EEEcCcHHHHH
Confidence 5789999999999999999887 4448999999999999999999876 42 36 88999987764
Q ss_pred CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 144 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 144 ~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.... +.||+|++.- ... ...+++.+.+.|+|||.++++.
T Consensus 126 ~~~~-~~fD~I~lDP-~~~-----~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 126 AERH-RYFHFIDLDP-FGS-----PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHST-TCEEEEEECC-SSC-----CHHHHHHHHHHEEEEEEEEEEE
T ss_pred Hhcc-CCCCEEEeCC-CCC-----HHHHHHHHHHhcCCCCEEEEEe
Confidence 3221 2799999652 111 1368888999999999888864
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-10 Score=89.82 Aligned_cols=76 Identities=13% Similarity=0.278 Sum_probs=61.5
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--CCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--NIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--~~~~D~V~ 155 (256)
...++.+|||||||+|.++..++..+. +|+++|+++.+++.+++++.. ..++ .++.+|+.+++...- .++|| |+
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avEid~~~~~~~~~~~~~-~~~v-~~i~~D~~~~~~~~~~~~~~~~-vv 101 (255)
T 3tqs_A 26 HPQKTDTLVEIGPGRGALTDYLLTECD-NLALVEIDRDLVAFLQKKYNQ-QKNI-TIYQNDALQFDFSSVKTDKPLR-VV 101 (255)
T ss_dssp CCCTTCEEEEECCTTTTTHHHHTTTSS-EEEEEECCHHHHHHHHHHHTT-CTTE-EEEESCTTTCCGGGSCCSSCEE-EE
T ss_pred CCCCcCEEEEEcccccHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHhh-CCCc-EEEEcchHhCCHHHhccCCCeE-EE
Confidence 567788999999999999999988774 999999999999999998865 2467 899999988765321 13688 55
Q ss_pred ec
Q psy8370 156 IQ 157 (256)
Q Consensus 156 ~~ 157 (256)
++
T Consensus 102 ~N 103 (255)
T 3tqs_A 102 GN 103 (255)
T ss_dssp EE
T ss_pred ec
Confidence 54
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.12 E-value=3.2e-12 Score=99.78 Aligned_cols=106 Identities=15% Similarity=0.206 Sum_probs=76.0
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
...++.+|||||||+|.++..++..+ .+|+|+|+|+.+++.++++... ..++ .++.+|+.+.+...+ ++| .|+++
T Consensus 26 ~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~-~~~v-~~~~~D~~~~~~~~~-~~f-~vv~n 100 (245)
T 1yub_A 26 NLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKL-NTRV-TLIHQDILQFQFPNK-QRY-KIVGN 100 (245)
T ss_dssp CCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTT-CSEE-EECCSCCTTTTCCCS-SEE-EEEEE
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhcc-CCce-EEEECChhhcCcccC-CCc-EEEEe
Confidence 46678899999999999999998887 4999999999999988877652 2356 889999988765431 368 56554
Q ss_pred hhhhccCHHHHH----------HHH----HHHhhhcCCCcEEEEEe
Q psy8370 158 WVLMFILDEDII----------KFL----NLCKQILNKNGIIIIKD 189 (256)
Q Consensus 158 ~~l~~~~~~~~~----------~~l----~~~~~~LkpgG~l~i~~ 189 (256)
--. +....... ..+ +.+.++|+|||.+.+..
T Consensus 101 ~Py-~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 101 IPY-HLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp CCS-SSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred CCc-cccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 211 11111111 233 66899999999887753
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-09 Score=88.01 Aligned_cols=148 Identities=11% Similarity=0.056 Sum_probs=96.5
Q ss_pred CCCeEEEEcCCCCHhHHHHHH--------hc-------CC-eEEEEeCCHHHHHHHHHHHHhcCC-------------C-
Q psy8370 81 GKTRVLDVGAGIGRISKYLLA--------KH-------FD-KIDLLEQSSKFIEQAKEEILKDCD-------------K- 130 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~--------~~-------~~-~v~~vD~s~~~~~~a~~~~~~~~~-------------~- 130 (256)
.+.+|+|+|||+|.++..++. +. .. +|+..|+........-+.+..... +
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 358899999999998887732 11 22 788888877665544443332110 0
Q ss_pred -cceEEEccccccCCCCCCCceeEEEechhhhccCH------------------------------------HHHHHHHH
Q psy8370 131 -LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD------------------------------------EDIIKFLN 173 (256)
Q Consensus 131 -i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~------------------------------------~~~~~~l~ 173 (256)
...-+.+++..-..+.. ++|+|+++.++||+.. .++..+|+
T Consensus 132 ~f~~gvpgSFy~rlfP~~--S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~ 209 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPAR--TIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLR 209 (374)
T ss_dssp SEEEEEESCTTSCCSCTT--CEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCc--ceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 10122333333344444 8999999999999862 15667899
Q ss_pred HHhhhcCCCcEEEEEecccCCCC------------cc------------------cc-CCCCceeeCHHHHHHHHH-hcC
Q psy8370 174 LCKQILNKNGIIIIKDNVASGVK------------NE------------------YD-DEDSSVVRSLPQFCLLFS-KAN 221 (256)
Q Consensus 174 ~~~~~LkpgG~l~i~~~~~~~~~------------~~------------------~~-~~~~~~~~~~~~~~~~l~-~~g 221 (256)
..++.|+|||.++++........ .. +. .....+.++.+++..+++ +.|
T Consensus 210 ~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~ 289 (374)
T 3b5i_A 210 ARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGS 289 (374)
T ss_dssp HHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCS
T ss_pred HHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCC
Confidence 99999999999999865443321 00 00 022345579999999998 599
Q ss_pred CcEEEeeee
Q psy8370 222 LKCVKSEKV 230 (256)
Q Consensus 222 f~~~~~~~~ 230 (256)
|++...+..
T Consensus 290 F~I~~le~~ 298 (374)
T 3b5i_A 290 FAIDKLVVY 298 (374)
T ss_dssp EEEEEEEEE
T ss_pred cEEEEEEEE
Confidence 999877643
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-10 Score=90.04 Aligned_cols=90 Identities=13% Similarity=0.169 Sum_probs=68.3
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
...++ +|||||||+|.++..++..+. +|+++|+++.+++.+++++.. .++ .++++|+.+++.... ..+|.|+++
T Consensus 44 ~~~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~~--~~v-~vi~~D~l~~~~~~~-~~~~~iv~N 117 (271)
T 3fut_A 44 RPFTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLSG--LPV-RLVFQDALLYPWEEV-PQGSLLVAN 117 (271)
T ss_dssp CCCCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTTT--SSE-EEEESCGGGSCGGGS-CTTEEEEEE
T ss_pred CCCCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCC--CCE-EEEECChhhCChhhc-cCccEEEec
Confidence 45667 999999999999999988875 899999999999999998763 467 899999988865432 257888877
Q ss_pred hhhhccCHHHHHHHHHH
Q psy8370 158 WVLMFILDEDIIKFLNL 174 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~ 174 (256)
.- +++..+-+.+++..
T Consensus 118 lP-y~iss~il~~ll~~ 133 (271)
T 3fut_A 118 LP-YHIATPLVTRLLKT 133 (271)
T ss_dssp EC-SSCCHHHHHHHHHH
T ss_pred Cc-ccccHHHHHHHhcC
Confidence 43 33433433444443
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-10 Score=94.65 Aligned_cols=102 Identities=18% Similarity=0.116 Sum_probs=81.0
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhcCC-C--cceEEEccccccCC-CCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCD-K--LDKCYNVGIQDFKP-EDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~--i~~~~~~d~~~~~~-~~~~~~~D~ 153 (256)
.++.+|||++||+|.++..++.+ |..+|+++|+++.+++.++++++..+. + + .++.+|+.+... ... +.||+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v-~v~~~Da~~~l~~~~~-~~fD~ 128 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRY-EIHGMEANFFLRKEWG-FGFDY 128 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGE-EEECSCHHHHHHSCCS-SCEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceE-EEEeCCHHHHHHHhhC-CCCcE
Confidence 35789999999999999999875 445899999999999999999987763 2 6 899999877643 222 37999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|++.- . .. ...+++.+.+.|+|||.++++.
T Consensus 129 V~lDP-~-g~----~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 129 VDLDP-F-GT----PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp EEECC-S-SC----CHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECC-C-cC----HHHHHHHHHHHhCCCCEEEEEe
Confidence 99875 1 11 1358888999999999888875
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.04 E-value=4.3e-09 Score=84.52 Aligned_cols=116 Identities=14% Similarity=0.046 Sum_probs=82.0
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFK 143 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~ 143 (256)
.++..++ ...++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++...+ .++ .++.+|+.++.
T Consensus 92 ~l~~~~l----~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v-~~~~~D~~~~~ 166 (309)
T 2b9e_A 92 CLPAMLL----DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCC-ELAEEDFLAVS 166 (309)
T ss_dssp GHHHHHH----CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSE-EEEECCGGGSC
T ss_pred HHHHHHh----CCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeE-EEEeCChHhcC
Confidence 4455555 46778999999999999999988752 2489999999999999999998776 356 88999988775
Q ss_pred CCCC-CCceeEEEec------hhhhccCH---------H-------HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 144 PEDL-NIKYDVIWIQ------WVLMFILD---------E-------DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 144 ~~~~-~~~~D~V~~~------~~l~~~~~---------~-------~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.... .++||.|++. .++..-++ + ...++|+.+.+.++ ||.++.+
T Consensus 167 ~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYs 233 (309)
T 2b9e_A 167 PSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYS 233 (309)
T ss_dssp TTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEE
T ss_pred ccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEE
Confidence 4321 1269999973 12221111 0 11346788888887 8988765
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.6e-10 Score=87.01 Aligned_cols=73 Identities=22% Similarity=0.331 Sum_probs=58.8
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~ 146 (256)
+.+++ +.....++.+|||||||+|.++..++..+..+|+++|+++.+++.++++ . ..++ .++.+|+.+++...
T Consensus 20 ~~~iv-~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~--~~~v-~~i~~D~~~~~~~~ 92 (249)
T 3ftd_A 20 LKKIA-EELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G--DERL-EVINEDASKFPFCS 92 (249)
T ss_dssp HHHHH-HHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C--CTTE-EEECSCTTTCCGGG
T ss_pred HHHHH-HhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c--CCCe-EEEEcchhhCChhH
Confidence 44444 3445677889999999999999999887656999999999999999887 2 2467 89999998886544
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=8.3e-10 Score=96.00 Aligned_cols=102 Identities=17% Similarity=0.206 Sum_probs=74.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc---CC--eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCcee
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH---FD--KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~---~~--~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
.....|||+|||+|.+....+..+ .. +|++||-|+. ...+++.....+ .+| .++.+|++++..++ ++|
T Consensus 356 ~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkV-tVI~gd~eev~LPE---KVD 430 (637)
T 4gqb_A 356 TNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEWGSQV-TVVSSDMREWVAPE---KAD 430 (637)
T ss_dssp TCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTTGGGE-EEEESCTTTCCCSS---CEE
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccCCCeE-EEEeCcceeccCCc---ccC
Confidence 344679999999999855544433 33 7899999974 556666665443 567 99999999987654 599
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
+|++-.+-..+-.+.....+....+.|||||.++
T Consensus 431 IIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 431 IIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 9999866444433333467888899999999765
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.99 E-value=7.3e-10 Score=86.81 Aligned_cols=79 Identities=19% Similarity=0.179 Sum_probs=62.3
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCH-------HHHHHHHHHHHhcC--CCcceEEEccccccCC--CC
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSS-------KFIEQAKEEILKDC--DKLDKCYNVGIQDFKP--ED 146 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~-------~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~--~~ 146 (256)
...++.+|||+|||+|..+..++..+. +|+++|+++ .+++.++++....+ .++ .++.+|+.+..+ ..
T Consensus 80 ~~~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri-~~~~~d~~~~l~~~~~ 157 (258)
T 2r6z_A 80 NHTAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARI-NLHFGNAAEQMPALVK 157 (258)
T ss_dssp TGGGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTE-EEEESCHHHHHHHHHH
T ss_pred CcCCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCe-EEEECCHHHHHHhhhc
Confidence 345668999999999999999988776 899999999 99999988765433 347 899999987532 11
Q ss_pred --CCCceeEEEechhh
Q psy8370 147 --LNIKYDVIWIQWVL 160 (256)
Q Consensus 147 --~~~~~D~V~~~~~l 160 (256)
. +||+|+++-.+
T Consensus 158 ~~~--~fD~V~~dP~~ 171 (258)
T 2r6z_A 158 TQG--KPDIVYLDPMY 171 (258)
T ss_dssp HHC--CCSEEEECCCC
T ss_pred cCC--CccEEEECCCC
Confidence 3 79999996443
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=5.7e-10 Score=89.19 Aligned_cols=80 Identities=19% Similarity=0.195 Sum_probs=64.4
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC--CC-CCCceeE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP--ED-LNIKYDV 153 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~--~~-~~~~~D~ 153 (256)
...++.+|||+|||+|..+..++... ..+|+|+|.|+.+++.|+++....+.++ .++++|+.+++. .. +.++||.
T Consensus 23 ~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v-~~v~~d~~~l~~~l~~~g~~~~D~ 101 (301)
T 1m6y_A 23 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRV-SLFKVSYREADFLLKTLGIEKVDG 101 (301)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTE-EEEECCGGGHHHHHHHTTCSCEEE
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcE-EEEECCHHHHHHHHHhcCCCCCCE
Confidence 45678899999999999999998874 2499999999999999999987665567 899999987642 11 1127999
Q ss_pred EEech
Q psy8370 154 IWIQW 158 (256)
Q Consensus 154 V~~~~ 158 (256)
|++..
T Consensus 102 Vl~D~ 106 (301)
T 1m6y_A 102 ILMDL 106 (301)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 99864
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-08 Score=79.94 Aligned_cols=104 Identities=18% Similarity=0.265 Sum_probs=81.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc------CCCcceEEEccccccCCCCCCCcee
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD------CDKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~------~~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
+.+++||-||.|.|..++.+++.. ..+|+.||+++.+++.+++.+... ..++ +++.+|...+..... ++||
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv-~v~~~Dg~~~l~~~~-~~yD 159 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRF-KLVIDDGVNFVNQTS-QTFD 159 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTE-EEEESCTTTTTSCSS-CCEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcE-EEEechHHHHHhhcc-ccCC
Confidence 567899999999999999997653 459999999999999999987531 2567 899999988875443 5899
Q ss_pred EEEechhh-----hccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 153 VIWIQWVL-----MFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 153 ~V~~~~~l-----~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+|+....= ..+- -..+++.+++.|+|||+++..
T Consensus 160 vIi~D~~dp~~~~~~L~---t~eFy~~~~~~L~p~Gv~v~q 197 (294)
T 3o4f_A 160 VIISDCTDPIGPGESLF---TSAFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp EEEESCCCCCCTTCCSS---CCHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEeCCCcCCCchhhc---CHHHHHHHHHHhCCCCEEEEe
Confidence 99976321 1111 135899999999999999984
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-09 Score=85.49 Aligned_cols=63 Identities=14% Similarity=0.276 Sum_probs=54.3
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCe----EEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDK----IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~----v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~ 145 (256)
...++.+|||||||+|.++..++..+. . |+++|+++.|++.++++. ..++ .++++|+.+++..
T Consensus 39 ~~~~~~~VLEIG~G~G~lt~~La~~~~-~~~~~V~avDid~~~l~~a~~~~---~~~v-~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 39 RPERGERMVEIGPGLGALTGPVIARLA-TPGSPLHAVELDRDLIGRLEQRF---GELL-ELHAGDALTFDFG 105 (279)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHHHHHC-BTTBCEEEEECCHHHHHHHHHHH---GGGE-EEEESCGGGCCGG
T ss_pred CCCCcCEEEEEccccHHHHHHHHHhCC-CcCCeEEEEECCHHHHHHHHHhc---CCCc-EEEECChhcCChh
Confidence 467789999999999999999988876 5 999999999999999984 2367 8999999887653
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-08 Score=76.20 Aligned_cols=107 Identities=9% Similarity=0.048 Sum_probs=76.8
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC----CcceEEEccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD----KLDKCYNVGIQD 141 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~i~~~~~~d~~~ 141 (256)
.++|...+ .+..+|||+|| |..+..+++....+|+.+|.+++..+.+++++...+. ++ .++.+|+.+
T Consensus 21 ~~~L~~~l------~~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I-~~~~gda~~ 91 (202)
T 3cvo_A 21 AEALRMAY------EEAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEV-NIVWTDIGP 91 (202)
T ss_dssp HHHHHHHH------HHCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEE-EEEECCCSS
T ss_pred HHHHHHHh------hCCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCce-EEEEeCchh
Confidence 46666655 46789999998 4677777664234999999999999999999987652 56 888888654
Q ss_pred c---------------C-------CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 142 F---------------K-------PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 142 ~---------------~-------~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
. + .....++||+|+...-.. ...+..+.+.|+|||.+++-
T Consensus 92 ~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~-------~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 92 TGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR-------VGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp BCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH-------HHHHHHHHHHCSSCEEEEET
T ss_pred hhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc-------hhHHHHHHHhcCCCeEEEEe
Confidence 3 1 011124799999986321 24566677999999999653
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-08 Score=84.20 Aligned_cols=144 Identities=12% Similarity=0.031 Sum_probs=92.1
Q ss_pred CCeEEEEcCCCCHhHHHHHHh--------------c--CC--eEEEEeCC-----------HHHHHHHHHHHHhcCCCcc
Q psy8370 82 KTRVLDVGAGIGRISKYLLAK--------------H--FD--KIDLLEQS-----------SKFIEQAKEEILKDCDKLD 132 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~--------------~--~~--~v~~vD~s-----------~~~~~~a~~~~~~~~~~i~ 132 (256)
.-+|+|+||++|..+..+... + .+ +|+..|+. +.+.+.+++... ...+.
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g-~~~~~- 130 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENG-RKIGS- 130 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTC-CCTTS-
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhcc-CCCCc-
Confidence 688999999999999887654 0 12 67788887 333333222110 00111
Q ss_pred eEEEcc---ccccCCCCCCCceeEEEechhhhccCHH-------------------------------------HHHHHH
Q psy8370 133 KCYNVG---IQDFKPEDLNIKYDVIWIQWVLMFILDE-------------------------------------DIIKFL 172 (256)
Q Consensus 133 ~~~~~d---~~~~~~~~~~~~~D~V~~~~~l~~~~~~-------------------------------------~~~~~l 172 (256)
-+..+. +-....+.. ++|+|+++.++||+... ++..+|
T Consensus 131 ~f~~gvpgSFy~rlfp~~--S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL 208 (384)
T 2efj_A 131 CLIGAMPGSFYSRLFPEE--SMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFL 208 (384)
T ss_dssp EEEEECCSCTTSCCSCTT--CEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecchhhhhccCCCC--ceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344443 333344455 89999999999998431 123347
Q ss_pred HHHhhhcCCCcEEEEEecccCCC--C-----c-----------------ccc-CCCCceeeCHHHHHHHHHhc-CCcEEE
Q psy8370 173 NLCKQILNKNGIIIIKDNVASGV--K-----N-----------------EYD-DEDSSVVRSLPQFCLLFSKA-NLKCVK 226 (256)
Q Consensus 173 ~~~~~~LkpgG~l~i~~~~~~~~--~-----~-----------------~~~-~~~~~~~~~~~~~~~~l~~~-gf~~~~ 226 (256)
+..++.|+|||.+++........ . . .++ .....+..+.+++..++++. +|++..
T Consensus 209 ~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~ 288 (384)
T 2efj_A 209 RIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILY 288 (384)
T ss_dssp HHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEE
Confidence 77899999999999987655443 1 0 000 11234557999999999987 588887
Q ss_pred eee
Q psy8370 227 SEK 229 (256)
Q Consensus 227 ~~~ 229 (256)
.+.
T Consensus 289 le~ 291 (384)
T 2efj_A 289 LET 291 (384)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.2e-08 Score=89.06 Aligned_cols=114 Identities=8% Similarity=-0.047 Sum_probs=80.8
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcC-------------------------------------------CeEEEEe
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHF-------------------------------------------DKIDLLE 111 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-------------------------------------------~~v~~vD 111 (256)
......++..|||.+||+|.++..++..+. ..++|+|
T Consensus 184 ~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~D 263 (703)
T 3v97_A 184 MRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSD 263 (703)
T ss_dssp HHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_pred HhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEE
Confidence 455667788999999999999988765431 2799999
Q ss_pred CCHHHHHHHHHHHHhcCC--CcceEEEccccccCCCCCCCceeEEEec--hhhhccCHHHHHHHH---HHHhhhcCCCcE
Q psy8370 112 QSSKFIEQAKEEILKDCD--KLDKCYNVGIQDFKPEDLNIKYDVIWIQ--WVLMFILDEDIIKFL---NLCKQILNKNGI 184 (256)
Q Consensus 112 ~s~~~~~~a~~~~~~~~~--~i~~~~~~d~~~~~~~~~~~~~D~V~~~--~~l~~~~~~~~~~~l---~~~~~~LkpgG~ 184 (256)
+++.+++.|+.+....+. .+ .+.++|+.++..+...+.||+|+++ +....-....+..+. .++.+.+.|||.
T Consensus 264 id~~av~~A~~N~~~agv~~~i-~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~ 342 (703)
T 3v97_A 264 SDARVIQRARTNARLAGIGELI-TFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWN 342 (703)
T ss_dssp SCHHHHHHHHHHHHHTTCGGGE-EEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCE
T ss_pred CCHHHHHHHHHHHHHcCCCCce-EEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCe
Confidence 999999999999987762 35 8999999887544322379999998 221111113333444 444555568998
Q ss_pred EEEEe
Q psy8370 185 IIIKD 189 (256)
Q Consensus 185 l~i~~ 189 (256)
+++..
T Consensus 343 ~~ilt 347 (703)
T 3v97_A 343 LSLFS 347 (703)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88863
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-09 Score=83.88 Aligned_cols=76 Identities=11% Similarity=0.175 Sum_probs=56.8
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCe--EEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC---CCcee
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDK--IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL---NIKYD 152 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~--v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~---~~~~D 152 (256)
...++.+|||||||+|.++. + +.+. + |+++|+++.|++.+++++... .++ .++.+|+.+++.... .+..|
T Consensus 18 ~~~~~~~VLEIG~G~G~lt~-l-~~~~-~~~v~avEid~~~~~~a~~~~~~~-~~v-~~i~~D~~~~~~~~~~~~~~~~~ 92 (252)
T 1qyr_A 18 NPQKGQAMVEIGPGLAALTE-P-VGER-LDQLTVIELDRDLAARLQTHPFLG-PKL-TIYQQDAMTFNFGELAEKMGQPL 92 (252)
T ss_dssp CCCTTCCEEEECCTTTTTHH-H-HHTT-CSCEEEECCCHHHHHHHHTCTTTG-GGE-EEECSCGGGCCHHHHHHHHTSCE
T ss_pred CCCCcCEEEEECCCCcHHHH-h-hhCC-CCeEEEEECCHHHHHHHHHHhccC-Cce-EEEECchhhCCHHHhhcccCCce
Confidence 46678899999999999999 6 4553 6 999999999999999876543 256 899999988654221 01246
Q ss_pred EEEech
Q psy8370 153 VIWIQW 158 (256)
Q Consensus 153 ~V~~~~ 158 (256)
.|+++.
T Consensus 93 ~vvsNl 98 (252)
T 1qyr_A 93 RVFGNL 98 (252)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 666663
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.2e-09 Score=81.74 Aligned_cols=128 Identities=15% Similarity=-0.016 Sum_probs=84.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHh-------cC------CeEEEEeCCH---HHHH-----------HHHHHHHhc-----
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAK-------HF------DKIDLLEQSS---KFIE-----------QAKEEILKD----- 127 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~-------~~------~~v~~vD~s~---~~~~-----------~a~~~~~~~----- 127 (256)
.+..+|||||+|+|..+..+++. .+ ..++++|..+ +.+. .+++.+...
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 45679999999999988776543 22 2799999876 4333 455555431
Q ss_pred -------C---CCcceEEEccccccCCCCC---CCceeEEEech-hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccC
Q psy8370 128 -------C---DKLDKCYNVGIQDFKPEDL---NIKYDVIWIQW-VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 193 (256)
Q Consensus 128 -------~---~~i~~~~~~d~~~~~~~~~---~~~~D~V~~~~-~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 193 (256)
. .++ .++.+|+.+..+... .+.||+|+... .-...|+---..+++.+++.|+|||.|+...
T Consensus 139 g~~r~~~~~~~~~l-~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tys---- 213 (257)
T 2qy6_A 139 GCHRLLLDEGRVTL-DLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT---- 213 (257)
T ss_dssp EEEEEEEC--CEEE-EEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESC----
T ss_pred chhheeccCCceEE-EEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEe----
Confidence 1 234 678889877543322 12699999863 2221211012469999999999999998621
Q ss_pred CCCccccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 194 GVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
....+++.+..+||.+...
T Consensus 214 ---------------aa~~vrr~L~~aGF~v~~~ 232 (257)
T 2qy6_A 214 ---------------SAGFVRRGLQEAGFTMQKR 232 (257)
T ss_dssp ---------------CBHHHHHHHHHHTEEEEEE
T ss_pred ---------------CCHHHHHHHHHCCCEEEeC
Confidence 1146788999999998654
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-08 Score=88.13 Aligned_cols=116 Identities=11% Similarity=-0.103 Sum_probs=82.6
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc-------------------CCeEEEEeCCHHHHHHHHHHHHhc
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-------------------FDKIDLLEQSSKFIEQAKEEILKD 127 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-------------------~~~v~~vD~s~~~~~~a~~~~~~~ 127 (256)
+++.+++ .+.++.+|+|.+||+|.++..++... ...++|+|+++.+++.|+.++...
T Consensus 159 ~~mv~~l----~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~ 234 (541)
T 2ar0_A 159 KTIIHLL----KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH 234 (541)
T ss_dssp HHHHHHH----CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred HHHHHHh----ccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHh
Confidence 4444554 45667899999999999988876531 127999999999999999988755
Q ss_pred CCC------cceEEEccccccCC-CCCCCceeEEEechhhhccC------------HHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 128 CDK------LDKCYNVGIQDFKP-EDLNIKYDVIWIQWVLMFIL------------DEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 128 ~~~------i~~~~~~d~~~~~~-~~~~~~~D~V~~~~~l~~~~------------~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+.. . .+.++|....+. ... .||+|+++--+.... ...-..+++.+.+.|+|||.+.++
T Consensus 235 gi~~~~~~~~-~I~~gDtL~~~~~~~~--~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V 311 (541)
T 2ar0_A 235 DIEGNLDHGG-AIRLGNTLGSDGENLP--KAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 311 (541)
T ss_dssp TCCCBGGGTB-SEEESCTTSHHHHTSC--CEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCccccccC-CeEeCCCccccccccc--CCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEE
Confidence 522 4 788888765432 223 799999973222110 111236899999999999998886
Q ss_pred e
Q psy8370 189 D 189 (256)
Q Consensus 189 ~ 189 (256)
.
T Consensus 312 ~ 312 (541)
T 2ar0_A 312 V 312 (541)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.3e-09 Score=87.86 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=61.2
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc--C-CCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD--C-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
++.+|||+|||+|..+..++..+. +|+++|+|+.+++.++++.... + .++ .++++|+.+.......++||+|++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i-~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEGKDV-NILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTTCEE-EEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCCCcE-EEEECcHHHhhhhccCCCceEEEEC
Confidence 478999999999999999877665 9999999999999999999865 4 357 8999999875322101279999985
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.84 E-value=5.1e-09 Score=91.11 Aligned_cols=103 Identities=17% Similarity=0.106 Sum_probs=73.7
Q ss_pred CCCeEEEEcCCCCHhHHHHHH--h--c----------CCeEEEEeCCHHHHHHHHHHHH-hcCCCcceEEEccccccCCC
Q psy8370 81 GKTRVLDVGAGIGRISKYLLA--K--H----------FDKIDLLEQSSKFIEQAKEEIL-KDCDKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~--~--~----------~~~v~~vD~s~~~~~~a~~~~~-~~~~~i~~~~~~d~~~~~~~ 145 (256)
....|||+|||+|.++...+. . + ..+|++||-|+.+....+.... ..+.++ .++.+|++++..+
T Consensus 409 ~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~V-tVI~gd~eev~lp 487 (745)
T 3ua3_A 409 KTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRV-TIIESDMRSLPGI 487 (745)
T ss_dssp SEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCS-EEEESCGGGHHHH
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeE-EEEeCchhhcccc
Confidence 356899999999999754322 1 2 1289999999987766555544 333567 9999999998652
Q ss_pred -----CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 146 -----DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 146 -----~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
.. ++|+|++-.+-..+..+-....|..+.+.|||||.++
T Consensus 488 ~~~~~~e--kVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 488 AKDRGFE--QPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHTTCC--CCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cccCCCC--cccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 23 7999999876544433334467778889999999765
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.81 E-value=4.8e-09 Score=81.86 Aligned_cols=99 Identities=12% Similarity=0.188 Sum_probs=67.7
Q ss_pred CCCCC--CeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC----------CCcceEEEccccccCCC
Q psy8370 78 SDPGK--TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC----------DKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 78 ~~~~~--~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----------~~i~~~~~~d~~~~~~~ 145 (256)
...++ .+|||+|||+|..+..++..+. +|+++|.++.+.+.+++.+.... .++ +++++|..+....
T Consensus 83 ~l~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i-~~~~~D~~~~L~~ 160 (258)
T 2oyr_A 83 GIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERL-QLIHASSLTALTD 160 (258)
T ss_dssp TCBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHE-EEEESCHHHHSTT
T ss_pred cccCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCE-EEEECCHHHHHHh
Confidence 34555 8999999999999999998887 79999999988777766654210 246 8999999876543
Q ss_pred CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCC
Q psy8370 146 DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKN 182 (256)
Q Consensus 146 ~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 182 (256)
.. +.||+|++.-.+.+-... ..+++..+.|++.
T Consensus 161 ~~-~~fDvV~lDP~y~~~~~s---aavkk~~~~lr~l 193 (258)
T 2oyr_A 161 IT-PRPQVVYLDPMFPHKQKS---ALVKKEMRVFQSL 193 (258)
T ss_dssp CS-SCCSEEEECCCCCCCCC--------HHHHHHHHH
T ss_pred Cc-ccCCEEEEcCCCCCcccc---hHHHHHHHHHHHh
Confidence 22 269999998666543211 3455555555553
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.80 E-value=3e-08 Score=80.72 Aligned_cols=147 Identities=12% Similarity=0.054 Sum_probs=98.0
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHh---------------cCC--eEEEEeCCHHHHHHHHHHHHhcC--CCcceEE---Ec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAK---------------HFD--KIDLLEQSSKFIEQAKEEILKDC--DKLDKCY---NV 137 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~---------------~~~--~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~---~~ 137 (256)
+..-+|+|+||++|..+..+... ..+ +|+..|+.......+.+.+.... .+. -+. .+
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~-~f~~gvpg 128 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGV-CFINGVPG 128 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTC-EEEEEEES
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCC-EEEEecch
Confidence 44578999999999877665433 122 78889999888777766554311 011 233 33
Q ss_pred cccccCCCCCCCceeEEEechhhhccCH-------------------------------HHHHHHHHHHhhhcCCCcEEE
Q psy8370 138 GIQDFKPEDLNIKYDVIWIQWVLMFILD-------------------------------EDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 138 d~~~~~~~~~~~~~D~V~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~l~ 186 (256)
++-....+.. ++|+|+++.++||+.. .++..+|+..++.|+|||.++
T Consensus 129 SFy~rlfp~~--S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mv 206 (359)
T 1m6e_X 129 SFYGRLFPRN--TLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMV 206 (359)
T ss_dssp CSSSCCSCTT--CBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEE
T ss_pred hhhhccCCCC--ceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 4444455555 8999999999999843 245667999999999999999
Q ss_pred EEecccCCCCc-------cc----------------c------CCCCceeeCHHHHHHHHHhcC-CcEEEeee
Q psy8370 187 IKDNVASGVKN-------EY----------------D------DEDSSVVRSLPQFCLLFSKAN-LKCVKSEK 229 (256)
Q Consensus 187 i~~~~~~~~~~-------~~----------------~------~~~~~~~~~~~~~~~~l~~~g-f~~~~~~~ 229 (256)
+.......... .+ . .....+..+.+++..++++.| |++...+.
T Consensus 207 l~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~ 279 (359)
T 1m6e_X 207 LTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEA 279 (359)
T ss_dssp EEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEE
T ss_pred EEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEE
Confidence 98654433210 00 0 022344568999999999985 47766543
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.7e-07 Score=78.05 Aligned_cols=146 Identities=11% Similarity=0.051 Sum_probs=95.2
Q ss_pred hhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHhcCC---CcceEEE
Q psy8370 64 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH----FDKIDLLEQSSKFIEQAKEEILKDCD---KLDKCYN 136 (256)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~---~i~~~~~ 136 (256)
...+++.+++.......++.+|+|.+||+|.++..++... ...++|+|+++.+...|+.++..++. ++ .+.+
T Consensus 204 ~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~-~I~~ 282 (542)
T 3lkd_A 204 PVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQ-FLHN 282 (542)
T ss_dssp HHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGE-EEEE
T ss_pred HHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCcc-ceEe
Confidence 4445666665211113467899999999999988876652 33899999999999999998776553 34 6788
Q ss_pred cccccc--CCCCCCCceeEEEec--hhhhc-----------------cCH---HHHHHHHHHHhhhcC-CCcEEEEEecc
Q psy8370 137 VGIQDF--KPEDLNIKYDVIWIQ--WVLMF-----------------ILD---EDIIKFLNLCKQILN-KNGIIIIKDNV 191 (256)
Q Consensus 137 ~d~~~~--~~~~~~~~~D~V~~~--~~l~~-----------------~~~---~~~~~~l~~~~~~Lk-pgG~l~i~~~~ 191 (256)
+|.... +... ...||+|+++ +...+ +++ .+ -.+++.+.+.|+ |||.+.++.+.
T Consensus 283 gDtL~~d~p~~~-~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~gGr~a~VlP~ 360 (542)
T 3lkd_A 283 ADTLDEDWPTQE-PTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDNGVMAIVLPH 360 (542)
T ss_dssp SCTTTSCSCCSS-CCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTTCEEEEEEET
T ss_pred cceecccccccc-cccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCceeEEEEecc
Confidence 887655 3211 2479999987 11100 111 12 258999999999 99998876322
Q ss_pred cCCCCccccCCCCceeeCHHHHHHHHHhcCC
Q psy8370 192 ASGVKNEYDDEDSSVVRSLPQFCLLFSKANL 222 (256)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf 222 (256)
.... . . -....+++.+.+.+.
T Consensus 361 g~Lf----~--~----~~~~~iRk~Lle~~~ 381 (542)
T 3lkd_A 361 GVLF----R--G----NAEGTIRKALLEEGA 381 (542)
T ss_dssp HHHH----C--C----THHHHHHHHHHHTTC
T ss_pred hHhh----C--C----chhHHHHHHHHhCCc
Confidence 1110 0 0 014678887777654
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5.1e-09 Score=81.11 Aligned_cols=108 Identities=15% Similarity=0.102 Sum_probs=66.8
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
....+..+|||||||+|.++..++.. +...+.++|++..+....... ...+.++ .....++........ .||+|+
T Consensus 70 ~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~~i-i~~~~~~dv~~l~~~--~~DlVl 145 (277)
T 3evf_A 70 GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGWNI-ITFKDKTDIHRLEPV--KCDTLL 145 (277)
T ss_dssp TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTGGG-EEEECSCCTTTSCCC--CCSEEE
T ss_pred CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCCCe-EEEeccceehhcCCC--CccEEE
Confidence 45677889999999999999987665 444788888885431000000 0001133 334444433333333 799999
Q ss_pred echhhh----ccCHHHHHHHHHHHhhhcCCC-cEEEEE
Q psy8370 156 IQWVLM----FILDEDIIKFLNLCKQILNKN-GIIIIK 188 (256)
Q Consensus 156 ~~~~l~----~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 188 (256)
|..+.+ .........+++.+.+.|+|| |.|++-
T Consensus 146 sD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~K 183 (277)
T 3evf_A 146 CDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVK 183 (277)
T ss_dssp ECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred ecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 987555 221111123578889999999 999985
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-07 Score=80.54 Aligned_cols=143 Identities=10% Similarity=-0.041 Sum_probs=90.4
Q ss_pred hhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc----------------CCeEEEEeCCHHHHHHHHHHHHhc
Q psy8370 64 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH----------------FDKIDLLEQSSKFIEQAKEEILKD 127 (256)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~----------------~~~v~~vD~s~~~~~~a~~~~~~~ 127 (256)
...+++.+++ ... ..+|+|.+||+|.++..++... ...++|+|+++.++..|+.++..+
T Consensus 232 ~Vv~lmv~ll----~p~-~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~ 306 (544)
T 3khk_A 232 SIVTLIVEML----EPY-KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIR 306 (544)
T ss_dssp HHHHHHHHHH----CCC-SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH----hcC-CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHh
Confidence 4445566655 233 3499999999999887764321 227999999999999999988766
Q ss_pred CCCc-ceEEEccccccCCCCCCCceeEEEec--hhhhc-----------------------cCH---HHHHHHHHHHhhh
Q psy8370 128 CDKL-DKCYNVGIQDFKPEDLNIKYDVIWIQ--WVLMF-----------------------ILD---EDIIKFLNLCKQI 178 (256)
Q Consensus 128 ~~~i-~~~~~~d~~~~~~~~~~~~~D~V~~~--~~l~~-----------------------~~~---~~~~~~l~~~~~~ 178 (256)
+... ..+.++|....+.... ..||+|+++ +.... +++ .+ -.+++.+.+.
T Consensus 307 gi~~~i~i~~gDtL~~~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~-~~Fl~~~l~~ 384 (544)
T 3khk_A 307 GIDFNFGKKNADSFLDDQHPD-LRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNAN-FAWMLHMLYH 384 (544)
T ss_dssp TCCCBCCSSSCCTTTSCSCTT-CCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTH-HHHHHHHHHT
T ss_pred CCCcccceeccchhcCccccc-ccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchh-HHHHHHHHHH
Confidence 5322 0336777654433221 379999987 22110 211 11 2589999999
Q ss_pred cCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCC
Q psy8370 179 LNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANL 222 (256)
Q Consensus 179 LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf 222 (256)
|+|||.+.+..+..... . . ......+++.+.+.+.
T Consensus 385 Lk~gGr~aiVlP~g~L~----~--~---~~~~~~iRk~Lle~~~ 419 (544)
T 3khk_A 385 LAPTGSMALLLANGSMS----S--N---TNNEGEIRKTLVEQDL 419 (544)
T ss_dssp EEEEEEEEEEEETHHHH----C--C---GGGHHHHHHHHHHTTC
T ss_pred hccCceEEEEecchhhh----c--C---cchHHHHHHHHHhCCc
Confidence 99999988763211100 0 0 0124678887777664
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=4.8e-08 Score=79.58 Aligned_cols=108 Identities=16% Similarity=0.120 Sum_probs=78.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc---------CCCcceEEEccccccCCC--CCC
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD---------CDKLDKCYNVGIQDFKPE--DLN 148 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---------~~~i~~~~~~d~~~~~~~--~~~ 148 (256)
.++++||-||.|.|..++.+++....+|+.||+++.+++.+++.+... ..++ +++.+|...+... ...
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv-~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCY-QVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTE-EEEESCHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccce-eeehHHHHHHHHhhhhcc
Confidence 356899999999999999998776679999999999999999976421 1345 7788888766421 111
Q ss_pred CceeEEEechhh-------hccCH-HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 149 IKYDVIWIQWVL-------MFILD-EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 149 ~~~D~V~~~~~l-------~~~~~-~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+.||+|+....- ..... .-...+++.+++.|+|||+++..
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 379999986321 11111 11246889999999999999874
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.2e-07 Score=80.55 Aligned_cols=109 Identities=16% Similarity=0.147 Sum_probs=72.1
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcC----CeEEEEeCCHHHHHHHHHHHH--h----cCCCcceEEEccccccCCCCCCC
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHF----DKIDLLEQSSKFIEQAKEEIL--K----DCDKLDKCYNVGIQDFKPEDLNI 149 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~----~~v~~vD~s~~~~~~a~~~~~--~----~~~~i~~~~~~d~~~~~~~~~~~ 149 (256)
.++.+|||.|||+|.++..++.... .+++|+|+++.+++.|+.+.. . .+.....+...|+........ +
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~-~ 398 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDF-A 398 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGG-T
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccccc-C
Confidence 4678999999999999999876542 379999999999999944332 2 111111345556555322111 3
Q ss_pred ceeEEEec--hhhhccCH-------------------------HHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 150 KYDVIWIQ--WVLMFILD-------------------------EDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 150 ~~D~V~~~--~~l~~~~~-------------------------~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.||+|+++ +....... +....+++.+.+.|+|||.+.+..
T Consensus 399 kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIl 465 (878)
T 3s1s_A 399 NVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIM 465 (878)
T ss_dssp TEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEE
Confidence 79999997 21111000 113457899999999999998863
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=5.4e-07 Score=73.14 Aligned_cols=144 Identities=8% Similarity=0.024 Sum_probs=88.7
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
+.++.+|||+||++|.++..+++++. .|++||+.+- -.. +... .++ .++..|.....+... .+|+|+|..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l-~~~----l~~~-~~V-~~~~~d~~~~~~~~~--~~D~vvsDm 278 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPM-AQS----LMDT-GQV-TWLREDGFKFRPTRS--NISWMVCDM 278 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCC-CHH----HHTT-TCE-EEECSCTTTCCCCSS--CEEEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhc-Chh----hccC-CCe-EEEeCccccccCCCC--CcCEEEEcC
Confidence 46789999999999999999998887 8999998742 111 1111 367 889999988877655 899999987
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCcce
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLF 238 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~ 238 (256)
+... ......+.........++.++...... ...........+.+.+.++..||...-...+-.......
T Consensus 279 ~~~p---~~~~~l~~~wl~~~~~~~aI~~lKL~m-------k~~~~~l~~~~~~i~~~l~~~g~~~~l~akhL~hdReEi 348 (375)
T 4auk_A 279 VEKP---AKVAALMAQWLVNGWCRETIFNLKLPM-------KKRYEEVSHNLAYIQAQLDEHGINAQIQARQLYHDREEV 348 (375)
T ss_dssp SSCH---HHHHHHHHHHHHTTSCSEEEEEEECCS-------SSHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCSSEE
T ss_pred CCCh---HHhHHHHHHHHhccccceEEEEEEecc-------cchHHHHHHHHHHHHHHHHhcCcchhheehhhccCCcEE
Confidence 6432 333445555555555555544321110 000011112345667788889987543333333334444
Q ss_pred eeeE
Q psy8370 239 KIYM 242 (256)
Q Consensus 239 ~~~~ 242 (256)
.+++
T Consensus 349 TV~~ 352 (375)
T 4auk_A 349 TVHV 352 (375)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4444
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.60 E-value=7.1e-08 Score=67.27 Aligned_cols=86 Identities=21% Similarity=0.161 Sum_probs=60.4
Q ss_pred CCCCeEEEEcCCCC-HhHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIG-RISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G-~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.++.+|||||||.| ..+..|++ .++ .|+++|+++.+++ ++..|+.+.....- ..||+|++.
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~---------------~v~dDiF~P~~~~Y-~~~DLIYsi 96 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG---------------IVRDDITSPRMEIY-RGAALIYSI 96 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT---------------EECCCSSSCCHHHH-TTEEEEEEE
T ss_pred CCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc---------------eEEccCCCCccccc-CCcCEEEEc
Confidence 45689999999999 69999987 677 8999999986433 67888877543210 169999886
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.- +.+++..+.++++.. |.-+++..
T Consensus 97 rP-----P~El~~~i~~lA~~v--~adliI~p 121 (153)
T 2k4m_A 97 RP-----PAEIHSSLMRVADAV--GARLIIKP 121 (153)
T ss_dssp SC-----CTTTHHHHHHHHHHH--TCEEEEEC
T ss_pred CC-----CHHHHHHHHHHHHHc--CCCEEEEc
Confidence 43 334455555555543 55677753
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.8e-07 Score=70.83 Aligned_cols=128 Identities=10% Similarity=0.016 Sum_probs=88.5
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhc------CCeEEEEeCCHH--------------------------HHHHHHHHHHh
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKH------FDKIDLLEQSSK--------------------------FIEQAKEEILK 126 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~------~~~v~~vD~s~~--------------------------~~~~a~~~~~~ 126 (256)
...+++|||+|+..|..+..++... ..+++++|..+. ..+.+++++..
T Consensus 104 ~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~ 183 (282)
T 2wk1_A 104 NNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRN 183 (282)
T ss_dssp TTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHH
T ss_pred cCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHH
Confidence 3557899999999999888875431 238999996421 36678888887
Q ss_pred cC---CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCC
Q psy8370 127 DC---DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDED 203 (256)
Q Consensus 127 ~~---~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 203 (256)
.+ .++ .++.+++.+..+....++||+|+...-.+ +.....++.+...|+|||++++-+...
T Consensus 184 ~gl~~~~I-~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiIv~DD~~~----------- 247 (282)
T 2wk1_A 184 YDLLDEQV-RFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYVIVDDYMM----------- 247 (282)
T ss_dssp TTCCSTTE-EEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEEEESSCTT-----------
T ss_pred cCCCcCce-EEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEEEEcCCCC-----------
Confidence 64 357 99999998765543224799999986421 234578999999999999888743210
Q ss_pred CceeeCHHHHHHHHHhcCCcE
Q psy8370 204 SSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 204 ~~~~~~~~~~~~~l~~~gf~~ 224 (256)
+.-..+.+.+..++.|..+
T Consensus 248 --~~G~~~Av~Ef~~~~~i~~ 266 (282)
T 2wk1_A 248 --CPPCKDAVDEYRAKFDIAD 266 (282)
T ss_dssp --CHHHHHHHHHHHHHTTCCS
T ss_pred --CHHHHHHHHHHHHhcCCce
Confidence 0111345666677777654
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.7e-08 Score=78.33 Aligned_cols=106 Identities=18% Similarity=0.120 Sum_probs=65.3
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc-cccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~-d~~~~~~~~~~~~~D~V~ 155 (256)
.+.++.+|||||||+|.++..++.. +...|+|+|++..+...+... ...+.++..+... |+..+ ... .+|+|+
T Consensus 87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g~~ii~~~~~~dv~~l--~~~--~~DvVL 161 (282)
T 3gcz_A 87 YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLGWNLIRFKDKTDVFNM--EVI--PGDTLL 161 (282)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTTGGGEEEECSCCGGGS--CCC--CCSEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCCCceEEeeCCcchhhc--CCC--CcCEEE
Confidence 5677889999999999999987744 455899999986532211100 0011123122211 33332 223 799999
Q ss_pred echhhh----ccCHHHHHHHHHHHhhhcCCC--cEEEEE
Q psy8370 156 IQWVLM----FILDEDIIKFLNLCKQILNKN--GIIIIK 188 (256)
Q Consensus 156 ~~~~l~----~~~~~~~~~~l~~~~~~Lkpg--G~l~i~ 188 (256)
|..+.. .+.......+++-+.+.|+|| |.|++-
T Consensus 162 SDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K 200 (282)
T 3gcz_A 162 CDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK 200 (282)
T ss_dssp ECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred ecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 986655 121111123577788999999 999985
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.39 E-value=5.4e-07 Score=70.29 Aligned_cols=77 Identities=14% Similarity=0.033 Sum_probs=61.9
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC---CCCCCceeEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP---EDLNIKYDVI 154 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~---~~~~~~~D~V 154 (256)
.+.++..++|.+||.|..+..+++++. +|+|+|.++.+++.+++ +.. .++ .++++++.++.. ..+.+++|.|
T Consensus 19 ~~~~gg~~VD~T~G~GGHS~~il~~~g-~VigiD~Dp~Ai~~A~~-L~~--~rv-~lv~~~f~~l~~~L~~~g~~~vDgI 93 (285)
T 1wg8_A 19 AVRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKG-LHL--PGL-TVVQGNFRHLKRHLAALGVERVDGI 93 (285)
T ss_dssp TCCTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHH-TCC--TTE-EEEESCGGGHHHHHHHTTCSCEEEE
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHCCC-EEEEEeCCHHHHHHHHh-hcc--CCE-EEEECCcchHHHHHHHcCCCCcCEE
Confidence 467789999999999999999988844 99999999999999998 644 477 899999988742 1111379999
Q ss_pred Eechh
Q psy8370 155 WIQWV 159 (256)
Q Consensus 155 ~~~~~ 159 (256)
++...
T Consensus 94 L~DLG 98 (285)
T 1wg8_A 94 LADLG 98 (285)
T ss_dssp EEECS
T ss_pred EeCCc
Confidence 97643
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=3.7e-06 Score=68.64 Aligned_cols=119 Identities=11% Similarity=0.050 Sum_probs=84.5
Q ss_pred hHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-------CCcceEEE
Q psy8370 65 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-------DKLDKCYN 136 (256)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-------~~i~~~~~ 136 (256)
+..+...++ ...++.+|||+.+|.|.=+.++++.+.. .|+++|+++.-++..++++...+ .++ .+..
T Consensus 136 aS~l~~~~L----~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v-~v~~ 210 (359)
T 4fzv_A 136 ASLLPVLAL----GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQV-RVTS 210 (359)
T ss_dssp GGHHHHHHH----CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSE-EEEC
T ss_pred HHHHHHHHh----CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCce-EEEe
Confidence 334555555 6788999999999999999888876643 79999999999999888887543 234 6677
Q ss_pred ccccccCCCCCCCceeEEEechh--------h-------hccCHHH-------HHHHHHHHhhhcCCCcEEEEEe
Q psy8370 137 VGIQDFKPEDLNIKYDVIWIQWV--------L-------MFILDED-------IIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 137 ~d~~~~~~~~~~~~~D~V~~~~~--------l-------~~~~~~~-------~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.|...+..... +.||.|++..- + ......+ ..++|..+.+.|||||.++-+.
T Consensus 211 ~D~~~~~~~~~-~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT 284 (359)
T 4fzv_A 211 WDGRKWGELEG-DTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST 284 (359)
T ss_dssp CCGGGHHHHST-TCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred Cchhhcchhcc-ccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 77776643222 37999995411 1 1111111 2358889999999999998764
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=5.2e-07 Score=70.49 Aligned_cols=106 Identities=17% Similarity=0.056 Sum_probs=64.1
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc-cccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~-d~~~~~~~~~~~~~D~V~ 155 (256)
-..++.+||||||++|.++..+++. +...|+|+|+...+...... ....+.++..+... |+..+ .. +.+|+|+
T Consensus 78 l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~~iv~~~~~~di~~l--~~--~~~DlVl 152 (300)
T 3eld_A 78 YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGWNIVKFKDKSNVFTM--PT--EPSDTLL 152 (300)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTGGGEEEECSCCTTTS--CC--CCCSEEE
T ss_pred CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCCceEEeecCceeeec--CC--CCcCEEe
Confidence 4567899999999999999999864 45588999997542110000 00001122122211 22222 22 3799999
Q ss_pred echhhhccCH---H--HHHHHHHHHhhhcCCC-cEEEEEe
Q psy8370 156 IQWVLMFILD---E--DIIKFLNLCKQILNKN-GIIIIKD 189 (256)
Q Consensus 156 ~~~~l~~~~~---~--~~~~~l~~~~~~Lkpg-G~l~i~~ 189 (256)
|..+.. ... + ....+++-+.+.|+|| |.|++-.
T Consensus 153 sD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~Kv 191 (300)
T 3eld_A 153 CDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKV 191 (300)
T ss_dssp ECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEE
T ss_pred ecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 976544 211 1 1134577888999999 9999853
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.16 E-value=2.7e-05 Score=63.11 Aligned_cols=141 Identities=12% Similarity=0.094 Sum_probs=95.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhc----------------------CCCcceEEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKD----------------------CDKLDKCYN 136 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~----------------------~~~i~~~~~ 136 (256)
.+...|+.+|||.......+...+.. .++-||. |+.++.-++.+... ..+. .++.
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~v~ 173 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRY-KLAA 173 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSE-EEEE
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCce-EEEe
Confidence 45689999999999999998765332 5555666 77777777776543 1355 7788
Q ss_pred ccccccCC-------CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccC---CCCc---c-----
Q psy8370 137 VGIQDFKP-------EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS---GVKN---E----- 198 (256)
Q Consensus 137 ~d~~~~~~-------~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~---~~~~---~----- 198 (256)
+|+.+... ..+.....++++-.++.+++++...++++.+.+.+ |+|.+++.+.... .... .
T Consensus 174 ~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~m~~~l~ 252 (334)
T 1rjd_A 174 CDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIMQSNLK 252 (334)
T ss_dssp CCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHHHHHHhh
Confidence 88876321 11113678999999999999999999999999887 7888776665444 1110 0
Q ss_pred --ccC--CCCceeeCHHHHHHHHHhcCCc
Q psy8370 199 --YDD--EDSSVVRSLPQFCLLFSKANLK 223 (256)
Q Consensus 199 --~~~--~~~~~~~~~~~~~~~l~~~gf~ 223 (256)
... .......++++..+.+.++||+
T Consensus 253 ~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 253 ESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred cccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 000 0111224778888888889986
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.16 E-value=4.2e-05 Score=65.95 Aligned_cols=122 Identities=16% Similarity=0.052 Sum_probs=80.4
Q ss_pred hhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--------------CCeEEEEeCCHHHHHHHHHHHHhcCC
Q psy8370 64 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--------------FDKIDLLEQSSKFIEQAKEEILKDCD 129 (256)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--------------~~~v~~vD~s~~~~~~a~~~~~~~~~ 129 (256)
...+++.+++ .+.++.+|+|.+||+|.+...+.... ...++|+|+++.+...|+-++--++.
T Consensus 204 ~Vv~lmv~l~----~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~ 279 (530)
T 3ufb_A 204 PVVRFMVEVM----DPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL 279 (530)
T ss_dssp HHHHHHHHHH----CCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhh----ccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC
Confidence 4445666666 56677899999999999987764421 12699999999999999988766553
Q ss_pred CcceEEEccccccCCCC--CCCceeEEEechhh---------hccC----H-HHHHHHHHHHhhhcC-------CCcEEE
Q psy8370 130 KLDKCYNVGIQDFKPED--LNIKYDVIWIQWVL---------MFIL----D-EDIIKFLNLCKQILN-------KNGIII 186 (256)
Q Consensus 130 ~i~~~~~~d~~~~~~~~--~~~~~D~V~~~~~l---------~~~~----~-~~~~~~l~~~~~~Lk-------pgG~l~ 186 (256)
....+..+|....+... ....||+|+++=-+ ...+ . ..-..+++.+.+.|| |||.+.
T Consensus 280 ~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~a 359 (530)
T 3ufb_A 280 EYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAA 359 (530)
T ss_dssp SCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEE
T ss_pred ccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEE
Confidence 32256777765433211 12379999987211 1111 0 122357788888886 699988
Q ss_pred EEe
Q psy8370 187 IKD 189 (256)
Q Consensus 187 i~~ 189 (256)
++.
T Consensus 360 vVl 362 (530)
T 3ufb_A 360 VVV 362 (530)
T ss_dssp EEE
T ss_pred EEe
Confidence 864
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.13 E-value=8.6e-06 Score=65.06 Aligned_cols=59 Identities=20% Similarity=0.085 Sum_probs=47.5
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC 128 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 128 (256)
+++..++ .... .++..|||++||+|.++..++..|. +++|+|+++.+++.+++++....
T Consensus 223 ~l~~~~i-~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 223 ELAERLV-RMFS-FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFAREV 281 (297)
T ss_dssp HHHHHHH-HHHC-CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHS
T ss_pred HHHHHHH-HHhC-CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHhc
Confidence 4455554 2222 5788999999999999999877776 89999999999999999987643
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.3e-05 Score=62.51 Aligned_cols=106 Identities=11% Similarity=0.081 Sum_probs=67.3
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc-cccccCCCCCCCceeEE
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~-d~~~~~~~~~~~~~D~V 154 (256)
..+.++.+||||||++|.++..++.. +...|+|+|+...-.+.-+ .++..+.++..+... |+..+.+ . ++|+|
T Consensus 90 ~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w~lV~~~~~~Dv~~l~~--~--~~D~i 164 (321)
T 3lkz_A 90 RFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGWNIVTMKSGVDVFYRPS--E--CCDTL 164 (321)
T ss_dssp TSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTGGGEEEECSCCTTSSCC--C--CCSEE
T ss_pred cCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCCcceEEEeccCHhhCCC--C--CCCEE
Confidence 45678889999999999999976554 5558999999864211000 000111122266665 8776665 3 69999
Q ss_pred EechhhhccCHH--HH---HHHHHHHhhhcCCC-cEEEEE
Q psy8370 155 WIQWVLMFILDE--DI---IKFLNLCKQILNKN-GIIIIK 188 (256)
Q Consensus 155 ~~~~~l~~~~~~--~~---~~~l~~~~~~Lkpg-G~l~i~ 188 (256)
+|... ..-+.. +. ...|+-+.+.|++| |.|++-
T Consensus 165 vcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~K 203 (321)
T 3lkz_A 165 LCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVK 203 (321)
T ss_dssp EECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEE
Confidence 99866 333222 21 22556667888888 888874
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=3.7e-05 Score=60.96 Aligned_cols=129 Identities=20% Similarity=0.150 Sum_probs=77.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHH----HhcCC---eEEEEeCCH--------H-HHHHHHHHHHhc----CC--CcceEEEc
Q psy8370 80 PGKTRVLDVGAGIGRISKYLL----AKHFD---KIDLLEQSS--------K-FIEQAKEEILKD----CD--KLDKCYNV 137 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~----~~~~~---~v~~vD~s~--------~-~~~~a~~~~~~~----~~--~i~~~~~~ 137 (256)
.+.-+|||+|-|+|....... +.+.. .++.+|..+ . ..+..+...... +. .+ .+..+
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L-~l~~G 173 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSL-KVLLG 173 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEE-EEEES
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEE-EEEec
Confidence 345689999999998654332 22322 456666421 1 122222222221 12 23 56778
Q ss_pred cccccCCCCCCCceeEEEechhhhccCHH-HHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHH
Q psy8370 138 GIQDFKPEDLNIKYDVIWIQWVLMFILDE-DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLL 216 (256)
Q Consensus 138 d~~~~~~~~~~~~~D~V~~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (256)
|+.+..+.-....+|+|+....--.-+++ --..+++.+++.++|||.+... . ....+++.
T Consensus 174 Da~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTY-----------t--------aag~VRR~ 234 (308)
T 3vyw_A 174 DARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSY-----------S--------SSLSVRKS 234 (308)
T ss_dssp CHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEES-----------C--------CCHHHHHH
T ss_pred hHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEE-----------e--------CcHHHHHH
Confidence 88766543222379999987532222221 1246999999999999998852 1 12568899
Q ss_pred HHhcCCcEEEee
Q psy8370 217 FSKANLKCVKSE 228 (256)
Q Consensus 217 l~~~gf~~~~~~ 228 (256)
|+++||++.+..
T Consensus 235 L~~aGF~V~k~~ 246 (308)
T 3vyw_A 235 LLTLGFKVGSSR 246 (308)
T ss_dssp HHHTTCEEEEEE
T ss_pred HHHCCCEEEecC
Confidence 999999987654
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=7.9e-06 Score=62.49 Aligned_cols=103 Identities=14% Similarity=0.082 Sum_probs=60.6
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHh--cCCCcceEEEc-cccccCCCCCCCceeE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILK--DCDKLDKCYNV-GIQDFKPEDLNIKYDV 153 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~~i~~~~~~-d~~~~~~~~~~~~~D~ 153 (256)
-+.++.+|+|+||+.|.++..++.. +...|.|.++.... . ... ... .+.++..+.++ |+.+.. .. ++|+
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~P-~~~~~~Gv~~i~~~~G~Df~~~~--~~--~~Dv 142 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EEP-MLMQSYGWNIVTMKSGVDVFYKP--SE--ISDT 142 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CCC-CCCCSTTGGGEEEECSCCGGGSC--CC--CCSE
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cCC-CcccCCCceEEEeeccCCccCCC--CC--CCCE
Confidence 5788999999999999999998765 12233444443220 0 000 000 11123244445 888743 22 6999
Q ss_pred EEechhhhccCH---HH--HHHHHHHHhhhcCCCc-EEEEE
Q psy8370 154 IWIQWVLMFILD---ED--IIKFLNLCKQILNKNG-IIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~---~~--~~~~l~~~~~~LkpgG-~l~i~ 188 (256)
|+|...-. ... +. ...+++-+.+.|+||| .|++-
T Consensus 143 VLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvK 182 (269)
T 2px2_A 143 LLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIK 182 (269)
T ss_dssp EEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEE
Confidence 99985432 111 11 1125777789999999 88874
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=9.2e-06 Score=61.22 Aligned_cols=105 Identities=17% Similarity=0.112 Sum_probs=67.8
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc-cccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~-d~~~~~~~~~~~~~D~V~ 155 (256)
.+.++.+|+|+||++|.++..++.. +...|+|+|+...-.+.-+ .++..+.++..|..+ |+...++ . ++|+|+
T Consensus 75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~gwn~v~fk~gvDv~~~~~--~--~~Dtll 149 (267)
T 3p8z_A 75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYGWNIVKLMSGKDVFYLPP--E--KCDTLL 149 (267)
T ss_dssp SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTTTTSEEEECSCCGGGCCC--C--CCSEEE
T ss_pred CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcCcCceEEEeccceeecCC--c--cccEEE
Confidence 5678889999999999999977654 4558999999864321000 001122234488888 8866665 3 699999
Q ss_pred echhhhccCH-HHH---HHHHHHHhhhcCCCcEEEEE
Q psy8370 156 IQWVLMFILD-EDI---IKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 156 ~~~~l~~~~~-~~~---~~~l~~~~~~LkpgG~l~i~ 188 (256)
|...-..-++ -+. .+.|+-+.+.|++ |.|++-
T Consensus 150 cDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~K 185 (267)
T 3p8z_A 150 CDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIK 185 (267)
T ss_dssp ECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEE
T ss_pred EecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEE
Confidence 9855422221 122 2356666788888 777763
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=1.6e-06 Score=86.77 Aligned_cols=141 Identities=17% Similarity=0.117 Sum_probs=68.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc-CCCCCCCcee
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH------FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF-KPEDLNIKYD 152 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~-~~~~~~~~~D 152 (256)
.+..+|||||.|+|..+..+.... +.+++.+|+|+...+.+++++... ++ .....|..+. ..... .||
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~--di-~~~~~d~~~~~~~~~~--~yd 1313 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL--HV-TQGQWDPANPAPGSLG--KAD 1313 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH--TE-EEECCCSSCCCC-------CC
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc--cc-ccccccccccccCCCC--cee
Confidence 356799999999998766554431 237899999998888888777542 12 2211232221 11223 799
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc----ccCC--CCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE----YDDE--DSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
+|++..++|.. .+....+.++++.|+|||.+++.+......... +... ...-..+.++|.+++..+||..+.
T Consensus 1314 lvia~~vl~~t--~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~gf~~~~ 1391 (2512)
T 2vz8_A 1314 LLVCNCALATL--GDPAVAVGNMAATLKEGGFLLLHTLLAGHPLGEMVGFLTSPEQGGRHLLSQDQWESLFAGASLHLVA 1391 (2512)
T ss_dssp EEEEECC----------------------CCEEEEEEC--------------------------CTTTTSSTTTTEEEEE
T ss_pred EEEEccccccc--ccHHHHHHHHHHhcCCCcEEEEEeccccccccccccccccccccCCcccCHHHHHHHHHhCCCceee
Confidence 99999999876 455689999999999999999875432110000 0000 001124556777788889998765
Q ss_pred e
Q psy8370 227 S 227 (256)
Q Consensus 227 ~ 227 (256)
.
T Consensus 1392 ~ 1392 (2512)
T 2vz8_A 1392 L 1392 (2512)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00047 Score=56.77 Aligned_cols=150 Identities=13% Similarity=0.047 Sum_probs=93.2
Q ss_pred CeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC------CCCceeEEEe
Q psy8370 83 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED------LNIKYDVIWI 156 (256)
Q Consensus 83 ~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~------~~~~~D~V~~ 156 (256)
.+++|+-||.|.++..+...|+..+.++|+++.+.+..+.++. .. .++.+|+.+..... ..+.+|+|+.
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~----~~-~~~~~DI~~~~~~~~~~~~~~~~~~D~i~g 77 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP----RS-LHVQEDVSLLNAEIIKGFFKNDMPIDGIIG 77 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT----TS-EEECCCGGGCCHHHHHHHHCSCCCCCEEEE
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC----CC-ceEecChhhcCHHHHHhhcccCCCeeEEEe
Confidence 5899999999999999988898778899999999888877653 23 66788887764311 1136999996
Q ss_pred chhhhccC-------HHHHHHHHH---HHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcE-E
Q psy8370 157 QWVLMFIL-------DEDIIKFLN---LCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKC-V 225 (256)
Q Consensus 157 ~~~l~~~~-------~~~~~~~l~---~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~-~ 225 (256)
.--+..++ .+....++. ++.+.++|. +++.++....... ......+.+. .|++.||.+ .
T Consensus 78 gpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~--~~v~ENV~gl~s~-------~~~~~~~~i~-~l~~~GY~v~~ 147 (376)
T 3g7u_A 78 GPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPL--FFLAENVPGIMQE-------KYSGIRNKAF-NLVSGDYDILD 147 (376)
T ss_dssp CCCCCTTC-------CHHHHHHHHHHHHHHHHHCCS--EEEEEECTTTTCG-------GGHHHHHHHH-HHHHTTEEECC
T ss_pred cCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCC--EEEEecchHhhcc-------CcHHHHHHHH-HHHcCCCccCc
Confidence 53322221 012223333 344456884 4444444433211 0111345666 888999988 2
Q ss_pred E---eeeecCCCCcceeeeEEEecc
Q psy8370 226 K---SEKVTGMPKSLFKIYMFALKP 247 (256)
Q Consensus 226 ~---~~~~~~~~~~~~~~~~~~l~~ 247 (256)
. .-..++.|..--.+++.+.+.
T Consensus 148 ~~vl~a~dyGvPQ~R~R~~iig~r~ 172 (376)
T 3g7u_A 148 PIKVKASDYGAPTIRTRYFFIGVKK 172 (376)
T ss_dssp CEEEEGGGGTCSBCCEEEEEEEEEG
T ss_pred EEEEEHhhCCCCCCCcEEEEEEEeC
Confidence 1 122456777777777766544
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.74 E-value=6.3e-05 Score=61.16 Aligned_cols=60 Identities=22% Similarity=0.270 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 143 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~ 143 (256)
++..|||||+|.|.++..|++.. +.+|+++|+++.++...++.+ . ..++ .++.+|+.++.
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~-~~~l-~ii~~D~l~~~ 118 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E-GSPL-QILKRDPYDWS 118 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T-TSSC-EEECSCTTCHH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c-CCCE-EEEECCccchh
Confidence 46899999999999999998864 458999999999999998876 2 2467 89999986653
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00063 Score=54.42 Aligned_cols=142 Identities=6% Similarity=0.018 Sum_probs=95.1
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc----CCCcceEEEccccccCCCC-------CCCc
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPED-------LNIK 150 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~i~~~~~~d~~~~~~~~-------~~~~ 150 (256)
...|++||||-=.....+.......++-|| .|..++..++.+... ..+. .++.+|+.+ .... +...
T Consensus 103 ~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~-~~v~~Dl~d-~~~~~l~~~g~d~~~ 179 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADR-REVPIDLRQ-DWPPALRSAGFDPSA 179 (310)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEE-EEEECCTTS-CHHHHHHHTTCCTTS
T ss_pred CCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCe-EEEecchHh-hHHHHHHhccCCCCC
Confidence 467999999988776666321112788888 588899888888742 2345 678888875 2100 0124
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCC------C----ccccCCC-------Ccee--eC-H
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV------K----NEYDDED-------SSVV--RS-L 210 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~------~----~~~~~~~-------~~~~--~~-~ 210 (256)
.=++++..+++|+++++...+++.+...+.||+.+++........ . ..+.... ..+. .+ .
T Consensus 180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~ 259 (310)
T 2uyo_A 180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENR 259 (310)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTC
T ss_pred CEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCCcchhHHHHHHHHHHHHHcCCcCCCCccccccCCCCh
Confidence 567788899999999888999999999999999888864332211 0 1011111 1122 25 7
Q ss_pred HHHHHHHHhcCCcEEE
Q psy8370 211 PQFCLLFSKANLKCVK 226 (256)
Q Consensus 211 ~~~~~~l~~~gf~~~~ 226 (256)
+++.+.|.++||+.+.
T Consensus 260 ~~~~~~f~~~G~~~~~ 275 (310)
T 2uyo_A 260 AVVADWLNRHGWRATA 275 (310)
T ss_dssp CCHHHHHTTTTEEEEE
T ss_pred HHHHHHHHHCcCcccc
Confidence 8899999999998873
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0015 Score=52.72 Aligned_cols=150 Identities=12% Similarity=0.070 Sum_probs=94.3
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhh
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 160 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l 160 (256)
.+.+++|+.||.|.++..+...|+..+.++|+++.+.+..+.++.. . . .+|+.++....- ..+|+|+...-+
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~----~-~--~~Di~~~~~~~~-~~~D~l~~gpPC 81 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE----K-P--EGDITQVNEKTI-PDHDILCAGFPC 81 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC----C-C--BSCGGGSCGGGS-CCCSEEEEECCC
T ss_pred CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCC----C-C--cCCHHHcCHhhC-CCCCEEEECCCC
Confidence 3579999999999999999888987899999999999988887642 1 1 577776654322 258999966221
Q ss_pred hcc-----------CHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 161 MFI-----------LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 161 ~~~-----------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
..+ +...+-.-+-++.+.++|. +++.++....... ......+.+.+.|++.||.+.....
T Consensus 82 Q~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~--~~~~ENV~gl~~~-------~~~~~~~~i~~~l~~~GY~v~~~vl 152 (327)
T 2c7p_A 82 QAFSISGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKNFASH-------DNGNTLEVVKNTMNELDYSFHAKVL 152 (327)
T ss_dssp TTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGGGGTG-------GGGHHHHHHHHHHHHTTBCCEEEEE
T ss_pred CCcchhcccCCCcchhhHHHHHHHHHHHhccCc--EEEEeCcHHHHhc-------cccHHHHHHHHHHHhCCCEEEEEEE
Confidence 111 0111112222334456884 4444544433211 0012346788889999998764332
Q ss_pred ---ecCCCCcceeeeEEEecc
Q psy8370 230 ---VTGMPKSLFKIYMFALKP 247 (256)
Q Consensus 230 ---~~~~~~~~~~~~~~~l~~ 247 (256)
..+.|..--.+++.+.+.
T Consensus 153 ~a~~~GvPQ~R~R~~iv~~~~ 173 (327)
T 2c7p_A 153 NALDYGIPQKRERIYMICFRN 173 (327)
T ss_dssp EGGGGTCSBCCEEEEEEEEBG
T ss_pred EHHHcCCCccceEEEEEEEeC
Confidence 355677767777777554
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0008 Score=54.72 Aligned_cols=149 Identities=13% Similarity=0.131 Sum_probs=91.4
Q ss_pred CCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC-CCceeEEEech
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-NIKYDVIWIQW 158 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-~~~~D~V~~~~ 158 (256)
+.+|+|+.||.|.++..+...| +..+.++|+++.+++..+.++.. . .++.+|+.+.....- ...+|+|+...
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~----~-~~~~~Di~~~~~~~~~~~~~D~l~~gp 76 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH----T-QLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT----S-CEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc----c-ccccCCHHHccHhHcCcCCcCEEEEcC
Confidence 4689999999999999998888 44799999999999988887642 2 567888887653210 01489999763
Q ss_pred hhhccCH--------HHHHHHHH---HHhhhcC--CCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEE
Q psy8370 159 VLMFILD--------EDIIKFLN---LCKQILN--KNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 225 (256)
Q Consensus 159 ~l~~~~~--------~~~~~~l~---~~~~~Lk--pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~ 225 (256)
-++.++. +....++. ++.+.++ |. +++.++...... ..+.+.+.+.|++.||.+.
T Consensus 77 PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~--~~~~ENV~~l~~----------~~~~~~i~~~l~~~GY~v~ 144 (343)
T 1g55_A 77 PCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGFEV----------SSTRDLLIQTIENCGFQYQ 144 (343)
T ss_dssp C------------------CHHHHHHHHGGGCSSCCS--EEEEEEETTGGG----------SHHHHHHHHHHHHTTEEEE
T ss_pred CCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCC--EEEEeCCccccC----------HHHHHHHHHHHHHCCCeeE
Confidence 3222211 11112333 3344455 64 333344333210 0234678888999999876
Q ss_pred Eeee---ecCCCCcceeeeEEEecc
Q psy8370 226 KSEK---VTGMPKSLFKIYMFALKP 247 (256)
Q Consensus 226 ~~~~---~~~~~~~~~~~~~~~l~~ 247 (256)
.... ..+.|..--.+++.+.+.
T Consensus 145 ~~vl~a~~~GvPQ~R~R~~iv~~~~ 169 (343)
T 1g55_A 145 EFLLSPTSLGIPNSRLRYFLIAKLQ 169 (343)
T ss_dssp EEEECGGGGTCSCCCCEEEEEEEES
T ss_pred EEEEEHHHCCCCCcccEEEEEEEeC
Confidence 5322 355676666666666543
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00026 Score=55.33 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=46.1
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD 127 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 127 (256)
.++..++ +.. ..++..|||..||+|..+..+...+. +++|+|+++.+++.+++++...
T Consensus 200 ~l~~~~i-~~~-~~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~ 257 (260)
T 1g60_A 200 DLIERII-RAS-SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQL 257 (260)
T ss_dssp HHHHHHH-HHH-CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-
T ss_pred HHHHHHH-HHh-CCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhc
Confidence 4455554 221 36788999999999999999877775 9999999999999999998653
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0062 Score=49.14 Aligned_cols=144 Identities=12% Similarity=0.141 Sum_probs=91.1
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHh------------------------cCCCcceE
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILK------------------------DCDKLDKC 134 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~------------------------~~~~i~~~ 134 (256)
+...|+-+|||.=.....+...+.. .++=||. |+.++.-++.+.. ...+. .+
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y-~~ 167 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRY-AV 167 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSE-EE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCce-EE
Confidence 4679999999999888888654322 5555665 4444443333332 12344 67
Q ss_pred EEccccccCC--------CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc------ccc
Q psy8370 135 YNVGIQDFKP--------EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------EYD 200 (256)
Q Consensus 135 ~~~d~~~~~~--------~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------~~~ 200 (256)
+.+|+.+... ..+....=++++-.++.+++++....+++.+.+... +|.+++.+...+.... .+.
T Consensus 168 v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d~fg~~M~~~l~ 246 (334)
T 3iei_A 168 IGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGDRFGQIMIENLR 246 (334)
T ss_dssp EECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTSHHHHHHHHHHH
T ss_pred EccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCCHHHHHHHHHHH
Confidence 8888866310 001124568888899999999999999999998775 5666666655433211 000
Q ss_pred C----CCCc-eeeCHHHHHHHHHhcCCcEEEe
Q psy8370 201 D----EDSS-VVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 201 ~----~~~~-~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
. ..+. .+.+.++..+.+.++||+.+..
T Consensus 247 ~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~ 278 (334)
T 3iei_A 247 RRQCDLAGVETCKSLESQKERLLSNGWETASA 278 (334)
T ss_dssp TTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEE
T ss_pred HhCCCCcccccCCCHHHHHHHHHHcCCCccee
Confidence 0 1111 2357888899999999998653
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00016 Score=57.84 Aligned_cols=84 Identities=18% Similarity=0.126 Sum_probs=61.3
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC--
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-F-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP-- 144 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~-- 144 (256)
+.+.+ ......++..++|..||.|..+..+++.. . .+|+|+|.++.+++.++ ++ ...++ .++.+++.++..
T Consensus 46 l~Evl-~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~~~Rv-~lv~~nF~~l~~~L 120 (347)
T 3tka_A 46 LDEAV-NGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--DDPRF-SIIHGPFSALGEYV 120 (347)
T ss_dssp THHHH-HHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--CCTTE-EEEESCGGGHHHHH
T ss_pred HHHHH-HhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--cCCcE-EEEeCCHHHHHHHH
Confidence 44444 44457788999999999999999998763 3 28999999999999984 43 23467 888888877632
Q ss_pred -CCC-CCceeEEEec
Q psy8370 145 -EDL-NIKYDVIWIQ 157 (256)
Q Consensus 145 -~~~-~~~~D~V~~~ 157 (256)
..+ .+++|.|+..
T Consensus 121 ~~~g~~~~vDgILfD 135 (347)
T 3tka_A 121 AERDLIGKIDGILLD 135 (347)
T ss_dssp HHTTCTTCEEEEEEE
T ss_pred HhcCCCCcccEEEEC
Confidence 111 1258988865
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0038 Score=50.38 Aligned_cols=149 Identities=12% Similarity=0.074 Sum_probs=94.5
Q ss_pred CeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhhc
Q psy8370 83 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMF 162 (256)
Q Consensus 83 ~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~ 162 (256)
.+|+|+=||.|.++.-+-..|+.-+.++|+++.+.+.-+.++. - .++.+|+.++...+- +.+|+++...-++.
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~-----~-~~~~~DI~~i~~~~~-~~~D~l~ggpPCQ~ 73 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-----A-KLIKGDISKISSDEF-PKCDGIIGGPPSQS 73 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC-----S-EEEESCGGGCCGGGS-CCCSEEECCCCGGG
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-----C-CcccCChhhCCHhhC-CcccEEEecCCCCC
Confidence 3799999999999999988898778899999998887776642 2 678889988765432 36899986521111
Q ss_pred ---------cCH--HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee--
Q psy8370 163 ---------ILD--EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK-- 229 (256)
Q Consensus 163 ---------~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~-- 229 (256)
..+ ..+-.-+-++.+.++|. +++.++....... .. ......+.+.|.+.||.+.....
T Consensus 74 fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk--~~~~ENV~gl~~~----~~---~~~~~~i~~~l~~~GY~v~~~vlna 144 (331)
T 3ubt_Y 74 WSEGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKGMMAQ----RH---NKAVQEFIQEFDNAGYDVHIILLNA 144 (331)
T ss_dssp TEETTEECCTTCGGGHHHHHHHHHHHHHCCS--EEEEEECCGGGGC----TT---SHHHHHHHHHHHHHTEEEEEEEEEG
T ss_pred cCCCCCccCCCCchhHHHHHHHHHHhccCCe--EEEeeeecccccc----cc---cchhhhhhhhhccCCcEEEEEeccc
Confidence 111 12222233445556885 4444544332110 01 12346778889999998765432
Q ss_pred -ecCCCCcceeeeEEEecc
Q psy8370 230 -VTGMPKSLFKIYMFALKP 247 (256)
Q Consensus 230 -~~~~~~~~~~~~~~~l~~ 247 (256)
.++.|..--.+++.+.+.
T Consensus 145 ~~yGvPQ~R~Rvfivg~r~ 163 (331)
T 3ubt_Y 145 NDYGVAQDRKRVFYIGFRK 163 (331)
T ss_dssp GGTTCSBCCEEEEEEEEEG
T ss_pred ccCCCCcccceEEEEEEcC
Confidence 345676666777766553
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0039 Score=50.23 Aligned_cols=149 Identities=10% Similarity=0.053 Sum_probs=93.4
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcC--CeE-EEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC-CCceeEEEe
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHF--DKI-DLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-NIKYDVIWI 156 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v-~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-~~~~D~V~~ 156 (256)
...+++|+-||.|.+...+...|. ..+ .++|+++.+.+..+.++.. .++..|+.+.....- ...+|+++.
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~------~~~~~DI~~~~~~~i~~~~~Dil~g 82 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE------EVQVKNLDSISIKQIESLNCNTWFM 82 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC------CCBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC------CcccCChhhcCHHHhccCCCCEEEe
Confidence 456899999999999999988785 466 7999999999888887643 245677776643211 014899996
Q ss_pred chhhhcc---------C-HHHHHHHHHHHhh----hc--CCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhc
Q psy8370 157 QWVLMFI---------L-DEDIIKFLNLCKQ----IL--NKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA 220 (256)
Q Consensus 157 ~~~l~~~---------~-~~~~~~~l~~~~~----~L--kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (256)
..-...+ . .+....++.++.+ .+ +| .+++.++...... ..+.+.+.+.|++.
T Consensus 83 gpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P--~~~~lENV~gl~~----------~~~~~~i~~~l~~~ 150 (327)
T 3qv2_A 83 SPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKP--KHIFIENVPLFKE----------SLVFKEIYNILIKN 150 (327)
T ss_dssp CCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCC--SEEEEEECGGGGG----------SHHHHHHHHHHHHT
T ss_pred cCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCC--CEEEEEchhhhcC----------hHHHHHHHHHHHhC
Confidence 5322222 0 1122234444444 44 45 4555555543321 12357788899999
Q ss_pred CCcEEEeee---ecCCCCcceeeeEEEecc
Q psy8370 221 NLKCVKSEK---VTGMPKSLFKIYMFALKP 247 (256)
Q Consensus 221 gf~~~~~~~---~~~~~~~~~~~~~~~l~~ 247 (256)
||.+..... ..+.|..--.+++.+.+.
T Consensus 151 GY~v~~~vl~a~~yGvPQ~R~R~fivg~r~ 180 (327)
T 3qv2_A 151 QYYIKDIICSPIDIGIPNSRTRYYVMARLT 180 (327)
T ss_dssp TCEEEEEEECGGGGTCSBCCCEEEEEEESS
T ss_pred CCEEEEEEEeHHHcCCCccceEEEEEEEeC
Confidence 998764432 345676666666666543
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0047 Score=48.29 Aligned_cols=95 Identities=18% Similarity=0.080 Sum_probs=61.6
Q ss_pred CCCCCCCeEEEEcC------CCCHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCC
Q psy8370 77 KSDPGKTRVLDVGA------GIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN 148 (256)
Q Consensus 77 ~~~~~~~~vLDiG~------G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~ 148 (256)
...+.+.+|||+|+ -.|.. .+.+.+.. .|+++|+.+-.. ....++++|....... .
T Consensus 105 ~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s------------da~~~IqGD~~~~~~~-~- 168 (344)
T 3r24_A 105 LAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS------------DADSTLIGDCATVHTA-N- 168 (344)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC------------SSSEEEESCGGGEEES-S-
T ss_pred EeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc------------CCCeEEEccccccccC-C-
Confidence 45678999999996 45552 22222332 899999987321 1114588897654432 3
Q ss_pred CceeEEEechhhh---ccC-----H-HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 149 IKYDVIWIQWVLM---FIL-----D-EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 149 ~~~D~V~~~~~l~---~~~-----~-~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+||+|++...-. +.. . .-.+.++.-+.+.|+|||.|++-
T Consensus 169 -k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK 216 (344)
T 3r24_A 169 -KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 216 (344)
T ss_dssp -CEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -CCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence 799999873311 100 0 23556888889999999999985
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00034 Score=54.70 Aligned_cols=147 Identities=14% Similarity=0.029 Sum_probs=93.3
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc----CCCCCCCceeEEEe
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF----KPEDLNIKYDVIWI 156 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~----~~~~~~~~~D~V~~ 156 (256)
.+..+||+=+|+|.++..++..+ .+++.||.++...+..++++... .++ .++..|.... .+... +||+|++
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~~-~~~-~V~~~D~~~~L~~l~~~~~--~fdLVfi 165 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFN-KKV-YVNHTDGVSKLNALLPPPE--KRGLIFI 165 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTT-SCE-EEECSCHHHHHHHHCSCTT--SCEEEEE
T ss_pred cCCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCcC-CcE-EEEeCcHHHHHHHhcCCCC--CccEEEE
Confidence 35678999999999999987744 79999999999999999888653 356 8888886442 23333 6999999
Q ss_pred chhhhccCHHHHHHHHHHHhh--hcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCC
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQ--ILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMP 234 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~--~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~ 234 (256)
.=-...- .+..++++.+.+ .+.|+|.+++=-+... ....+.+.+.+++.|......+....-+
T Consensus 166 DPPYe~k--~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~-------------~~~~~~~~~~l~~~~~~~l~~el~~~~~ 230 (283)
T 2oo3_A 166 DPSYERK--EEYKEIPYAIKNAYSKFSTGLYCVWYPVVN-------------KAWTEQFLRKMREISSKSVRIELHLNPL 230 (283)
T ss_dssp CCCCCST--THHHHHHHHHHHHHHHCTTSEEEEEEEESS-------------HHHHHHHHHHHHHHCSSEEEEEEECCCS
T ss_pred CCCCCCC--cHHHHHHHHHHHhCccCCCeEEEEEEeccc-------------hHHHHHHHHHHHhcCCCeEEEEEEecCC
Confidence 7433321 234455555544 4478888887211000 0123566677776676666655443211
Q ss_pred --CcceeeeEEEecc
Q psy8370 235 --KSLFKIYMFALKP 247 (256)
Q Consensus 235 --~~~~~~~~~~l~~ 247 (256)
......-|+.+.|
T Consensus 231 ~~~gm~gsGm~viNp 245 (283)
T 2oo3_A 231 INEGMTGCGLWIINP 245 (283)
T ss_dssp SCCSCCEEEEEEESC
T ss_pred CCCCcCceeEEEECC
Confidence 3344444444444
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0064 Score=47.03 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=88.9
Q ss_pred hhhhhhhhccCCCCcccccccCCCCccccchhhhHHHHH--HHHhccCCCCCCCeEEEEcCCCCHhHHHHHHh-------
Q psy8370 32 HYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLS--SLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK------- 102 (256)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~------- 102 (256)
...+..+++...+.+..+.+..+..+.... ...+++. .+. +.. ..-++.|+|+|+-.|..+..++..
T Consensus 22 ~~~~l~~~~~~~~~~~~e~l~~~~~~~~~~--~l~~~l~~~~l~-~~i-~~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~ 97 (257)
T 3tos_A 22 TTQRLTKLLTNSPIPTEELVNNLPLFLRRH--QMTDLLSMDALY-RQV-LDVPGVIMEFGVRFGRHLGTFAALRGVYEPY 97 (257)
T ss_dssp HHHHHHHHHHTCCSCGGGGGGCGGGGCCHH--HHHHHHHHHHHH-HHT-TTSCSEEEEECCTTCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCCChHHHHHhHHhhhhHH--HHHHHHHHHHHH-HHh-hCCCCeEEEEecccCHHHHHHHHHHHHhccc
Confidence 444556777777777666666665433311 1112222 222 111 245679999999999988876542
Q ss_pred c-CCeEEEEe-----CCHH-------------------HHHHHHHHH------Hhc---CCCcceEEEccccccCCC---
Q psy8370 103 H-FDKIDLLE-----QSSK-------------------FIEQAKEEI------LKD---CDKLDKCYNVGIQDFKPE--- 145 (256)
Q Consensus 103 ~-~~~v~~vD-----~s~~-------------------~~~~a~~~~------~~~---~~~i~~~~~~d~~~~~~~--- 145 (256)
+ ..+++++| +.+. ..+..++.+ +.. ..++ .++.+++.+..+.
T Consensus 98 ~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~i-~li~G~~~dTL~~~l~ 176 (257)
T 3tos_A 98 NPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECSDFFGHVTQRS-VLVEGDVRETVPRYLA 176 (257)
T ss_dssp CTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTTSTTTTSCCSE-EEEESCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhhhhhcCCCCCcE-EEEEecHHHHHHHHHH
Confidence 2 24899999 3210 111122211 111 2456 8999998776532
Q ss_pred -CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 146 -DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 146 -~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
...+.+|+|+...-. .+.....++.+...|+|||++++-+
T Consensus 177 ~~~~~~~dlv~ID~D~----Y~~t~~~le~~~p~l~~GGvIv~DD 217 (257)
T 3tos_A 177 ENPQTVIALAYFDLDL----YEPTKAVLEAIRPYLTKGSIVAFDE 217 (257)
T ss_dssp HCTTCCEEEEEECCCC----HHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred hCCCCceEEEEEcCcc----cchHHHHHHHHHHHhCCCcEEEEcC
Confidence 111369999988642 1344568899999999999999854
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0049 Score=54.84 Aligned_cols=128 Identities=13% Similarity=0.022 Sum_probs=79.1
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhc-----------CC--eEEEEeC---CHHHHHHHHH-----------HHHhcC-----
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKH-----------FD--KIDLLEQ---SSKFIEQAKE-----------EILKDC----- 128 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~-----------~~--~v~~vD~---s~~~~~~a~~-----------~~~~~~----- 128 (256)
+.-+|+|+|.|+|.......... .. .++++|. +.+.+..+-. ......
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 45699999999998776654421 11 5889998 6666653322 222121
Q ss_pred ----------CCcceEEEccccccCCCCC---CCceeEEEechhhhccCHHH-HHHHHHHHhhhcCCCcEEEEEecccCC
Q psy8370 129 ----------DKLDKCYNVGIQDFKPEDL---NIKYDVIWIQWVLMFILDED-IIKFLNLCKQILNKNGIIIIKDNVASG 194 (256)
Q Consensus 129 ----------~~i~~~~~~d~~~~~~~~~---~~~~D~V~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~ 194 (256)
..+ .+..+|+.+..+.-. ...+|+|+....-...+++. -..+++.+.+.++|||.+...
T Consensus 146 ~~~~~~~~~~~~l-~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~------ 218 (676)
T 3ps9_A 146 CHRLLLDAGRVTL-DLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF------ 218 (676)
T ss_dssp EEEEEEGGGTEEE-EEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES------
T ss_pred ceEEEecCCcEEE-EEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEec------
Confidence 112 355566655443211 13799999865322222211 236889999999999988752
Q ss_pred CCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 195 VKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
. ....+++.+.++||.+....
T Consensus 219 -----~--------~~~~vr~~L~~aGf~v~~~~ 239 (676)
T 3ps9_A 219 -----T--------SAGFVRRGLQDAGFTMQKRK 239 (676)
T ss_dssp -----C--------CCHHHHHHHHHHTCEEEEEE
T ss_pred -----c--------CcHHHHHHHHhCCeEEEecc
Confidence 1 11467899999999987644
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0012 Score=53.32 Aligned_cols=63 Identities=10% Similarity=-0.023 Sum_probs=48.8
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 143 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~ 143 (256)
..++..|||.-||+|..+......|- +.+|+|+++...+.+++++...+... ..+..|+.+..
T Consensus 250 ~~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~~~-~~~~~~~~~i~ 312 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNNISE-EKITDIYNRIL 312 (323)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSCSCH-HHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhcccch-HHHHHHHHHHH
Confidence 36788999999999999999876665 89999999999999999876544333 44455554443
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0052 Score=54.80 Aligned_cols=129 Identities=11% Similarity=-0.017 Sum_probs=79.1
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-----------C--CeEEEEeC---CHHHHHHHH-----------HHHHhcC----
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-----------F--DKIDLLEQ---SSKFIEQAK-----------EEILKDC---- 128 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-----------~--~~v~~vD~---s~~~~~~a~-----------~~~~~~~---- 128 (256)
.+.-+|+|+|.|+|.....+.+.. . -.++.+|. +...+..+- +......
T Consensus 57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 345799999999998776654421 1 16889998 444443322 1222111
Q ss_pred -----------CCcceEEEccccccCCCCC---CCceeEEEechhhhccCHH-HHHHHHHHHhhhcCCCcEEEEEecccC
Q psy8370 129 -----------DKLDKCYNVGIQDFKPEDL---NIKYDVIWIQWVLMFILDE-DIIKFLNLCKQILNKNGIIIIKDNVAS 193 (256)
Q Consensus 129 -----------~~i~~~~~~d~~~~~~~~~---~~~~D~V~~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~ 193 (256)
..+ .+..+|+.+..+.-. .+.+|+++....--.-+++ --..++..+.++++|||.+...
T Consensus 137 ~~~r~~~~~~~~~l-~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~----- 210 (689)
T 3pvc_A 137 GCHRILLADGAITL-DLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTF----- 210 (689)
T ss_dssp EEEEEEETTTTEEE-EEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEES-----
T ss_pred CceEEEecCCcEEE-EEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEec-----
Confidence 123 567778766554321 2479999986432111111 1146889999999999987752
Q ss_pred CCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 194 GVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
. ....+++.+.++||.+....
T Consensus 211 ------~--------~~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 211 ------T--------AAGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp ------C--------CCHHHHHHHHHTTCEEEEEE
T ss_pred ------c--------CcHHHHHHHHhCCeEEEecc
Confidence 1 11467899999999987654
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.02 Score=46.23 Aligned_cols=149 Identities=15% Similarity=0.151 Sum_probs=91.2
Q ss_pred CeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC-CCceeEEEechh
Q psy8370 83 TRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-NIKYDVIWIQWV 159 (256)
Q Consensus 83 ~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-~~~~D~V~~~~~ 159 (256)
.+++|+-||.|.+...+...|. ..+.++|+++.+.+.-+.++.. . .+...|+.+.....- ...+|+++...-
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~----~-~~~~~DI~~~~~~~~~~~~~D~l~ggpP 78 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE----T-NLLNRNIQQLTPQVIKKWNVDTILMSPP 78 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT----S-CEECCCGGGCCHHHHHHTTCCEEEECCC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC----C-ceeccccccCCHHHhccCCCCEEEecCC
Confidence 5799999999999999977786 4688999999988887777542 2 466778877653211 015899986522
Q ss_pred hhccC--------HHHHHHHHHH---HhhhcC-CCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 160 LMFIL--------DEDIIKFLNL---CKQILN-KNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 160 l~~~~--------~~~~~~~l~~---~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
...++ .+....++.+ +.+.++ | .+++.++....... .+.+.+.+.|++.||.+...
T Consensus 79 CQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P--~~~vlENV~gl~~~----------~~~~~i~~~l~~~GY~v~~~ 146 (333)
T 4h0n_A 79 CQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNV--DYILMENVKGFENS----------TVRNLFIDKLKECNFIYQEF 146 (333)
T ss_dssp CCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTC--CEEEEEECTTGGGS----------HHHHHHHHHHHHTTEEEEEE
T ss_pred CcchhhhhhccCCcCcccccHHHHHHHHHHhcCC--CEEEEecchhhhhh----------hHHHHHHHHHHhCCCeEEEE
Confidence 21110 0111122333 334444 6 45555555433210 12467889999999988654
Q ss_pred ee---ecCCCCcceeeeEEEeccC
Q psy8370 228 EK---VTGMPKSLFKIYMFALKPN 248 (256)
Q Consensus 228 ~~---~~~~~~~~~~~~~~~l~~~ 248 (256)
.. ..+.|..--.+++.+.+..
T Consensus 147 vl~a~~~GvPQ~R~R~fiva~r~~ 170 (333)
T 4h0n_A 147 LLCPSTVGVPNSRLRYYCTARRNN 170 (333)
T ss_dssp EECTTTTTCSCCCCEEEEEEEETT
T ss_pred EecHHHcCCCccceEEEEEEEeCC
Confidence 43 2445666666666665443
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.026 Score=47.89 Aligned_cols=155 Identities=12% Similarity=0.061 Sum_probs=90.3
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC---------------
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------------- 146 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------------- 146 (256)
.-+++|+-||.|.++..+...|+..|.++|+++.+.+.-+.++.... .. .++..|+.+.....
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p-~~-~~~~~DI~~i~~~~~~~~~~~~~~~~i~~ 165 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDP-AT-HHFNEDIRDITLSHQEGVSDEAAAEHIRQ 165 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCT-TT-CEEESCTHHHHCTTCTTSCHHHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCC-Cc-ceeccchhhhhhccccccchhhHHhhhhh
Confidence 46899999999999999977888678999999998887776653211 22 56778887664211
Q ss_pred CCCceeEEEechhhhccCH--------------------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCce
Q psy8370 147 LNIKYDVIWIQWVLMFILD--------------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSV 206 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~--------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 206 (256)
..+.+|+++...-+..++. ..+-.-+-++.+.++|. +++.++....... .-
T Consensus 166 ~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~riI~~~rPk--~fvlENV~gl~s~-------~~ 236 (482)
T 3me5_A 166 HIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRPA--MFVLENVKNLKSH-------DK 236 (482)
T ss_dssp HSCCCSEEEEECCCCCC------------------CTTTTSHHHHHHHHHHHHCCS--EEEEEEETTTTTG-------GG
T ss_pred cCCCCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHHHHHHcCCc--EEEEeCcHHHhcc-------cC
Confidence 0135899986532222211 01111122233445774 4555554443211 01
Q ss_pred eeCHHHHHHHHHhcCCcEEE-----------eeeecCCCCcceeeeEEEecc
Q psy8370 207 VRSLPQFCLLFSKANLKCVK-----------SEKVTGMPKSLFKIYMFALKP 247 (256)
Q Consensus 207 ~~~~~~~~~~l~~~gf~~~~-----------~~~~~~~~~~~~~~~~~~l~~ 247 (256)
..+...+.+.|++.||.+.. ..-....|..--.+++.+.+.
T Consensus 237 g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlnA~~~vPQ~R~R~fivg~r~ 288 (482)
T 3me5_A 237 GKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRR 288 (482)
T ss_dssp GHHHHHHHHHHHHTTEEETTTTCCSTTCTTEEEGGGTSSBCCEEEEEEEEEG
T ss_pred CcHHHHHHHHHhcCCcEEEeccccCcccceeeeccccCCccceEEEEEEEec
Confidence 12346788889999998741 111112566555666666543
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.03 Score=46.03 Aligned_cols=80 Identities=14% Similarity=0.205 Sum_probs=52.6
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhc------CC--eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCC
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKH------FD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI 149 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~------~~--~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~ 149 (256)
..+.+..|+|+|+|.|.++..++... +. +++.||+|+...+.-++.+...+ ++ .+. .++.+++.
T Consensus 77 g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~-~v-~W~-~~l~~lp~----- 148 (387)
T 1zkd_A 77 DEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIR-NI-HWH-DSFEDVPE----- 148 (387)
T ss_dssp TCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCS-SE-EEE-SSGGGSCC-----
T ss_pred CCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCCC-Ce-EEe-CChhhcCC-----
Confidence 44556689999999999988776431 12 89999999998886665554332 33 333 33444432
Q ss_pred ceeEEEechhhhccCH
Q psy8370 150 KYDVIWIQWVLMFILD 165 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~ 165 (256)
..=+|+++.++..+|-
T Consensus 149 ~~~~viANE~fDAlPv 164 (387)
T 1zkd_A 149 GPAVILANEYFDVLPI 164 (387)
T ss_dssp SSEEEEEESSGGGSCC
T ss_pred CCeEEEeccccccCce
Confidence 2357788888877753
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.14 Score=45.74 Aligned_cols=143 Identities=15% Similarity=0.154 Sum_probs=89.0
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcC-------CeEEEEeCC-HHHHHHHHHHHHhcC------------------------
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHF-------DKIDLLEQS-SKFIEQAKEEILKDC------------------------ 128 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~-------~~v~~vD~s-~~~~~~a~~~~~~~~------------------------ 128 (256)
+...|+-+|||.=.....+..... ..+..+|++ |+.++.-++.+....
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 467899999999988888855422 245555555 444444444443111
Q ss_pred -CCcceEEEccccccCC--------CC-CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-
Q psy8370 129 -DKLDKCYNVGIQDFKP--------ED-LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN- 197 (256)
Q Consensus 129 -~~i~~~~~~d~~~~~~--------~~-~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~- 197 (256)
.+. .++..|+.+... .. +....=++++-.++.+++++...++|+.+.+. |+|.+++.+...+....
T Consensus 187 s~~y-~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~~~e~~~~~~~~d 263 (695)
T 2zwa_A 187 TPKY-LARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFIILEQLIPKGPFE 263 (695)
T ss_dssp CSSE-EEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEEEEEECCTTCTTS
T ss_pred CCCe-eEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEEEEEeecCCCCCC
Confidence 144 677888876411 00 11245677788899999999999999999864 67877776654432110
Q ss_pred --------ccc-----CCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 198 --------EYD-----DEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 198 --------~~~-----~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
.+. ........+.++..+.|.++||+.+.
T Consensus 264 ~f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~ 305 (695)
T 2zwa_A 264 PFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVN 305 (695)
T ss_dssp HHHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEE
T ss_pred hHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcc
Confidence 000 01111234788999999999998654
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.014 Score=48.60 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=41.5
Q ss_pred CCCCCeEEEEcCCCCHhHHHHH-HhcC--CeEEEEeCCHHHHHHHHHHHHh
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLL-AKHF--DKIDLLEQSSKFIEQAKEEILK 126 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~-~~~~--~~v~~vD~s~~~~~~a~~~~~~ 126 (256)
..++..++|+|++.|..+..++ ..+. .+|+++|+++...+..+++...
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 4678999999999999999887 3332 4899999999999999998876
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.004 Score=51.12 Aligned_cols=102 Identities=16% Similarity=-0.003 Sum_probs=65.3
Q ss_pred ccCCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc---CCCCCCC
Q psy8370 75 QKKSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF---KPEDLNI 149 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~---~~~~~~~ 149 (256)
+.....++.+||-+|+|. |..+..+++. |+.+|+++|.+++-++.+++. +.. ..+..+-.++ ......+
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~--~vi~~~~~~~~~~~~~~~~g 257 (371)
T 1f8f_A 184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT--HVINSKTQDPVAAIKEITDG 257 (371)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHTTS
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCC--EEecCCccCHHHHHHHhcCC
Confidence 344677889999999875 7777777664 554799999999888887653 111 2222111111 0000012
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+|+|+....- ...++.+.+.|+++|.+++...
T Consensus 258 g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 258 GVNFALESTGS--------PEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp CEEEEEECSCC--------HHHHHHHHHTEEEEEEEEECCC
T ss_pred CCcEEEECCCC--------HHHHHHHHHHHhcCCEEEEeCC
Confidence 59999875331 2467778899999999988643
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.021 Score=45.86 Aligned_cols=58 Identities=14% Similarity=0.156 Sum_probs=44.3
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCH---HHHHHHHHHHHhc
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSS---KFIEQAKEEILKD 127 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~---~~~~~a~~~~~~~ 127 (256)
.++..++ +.. ..++..|||.-||+|..+......+- +.+|+|+++ ...+.+++++...
T Consensus 230 ~l~~~~i-~~~-~~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~~ 290 (319)
T 1eg2_A 230 AVIERLV-RAL-SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDD 290 (319)
T ss_dssp HHHHHHH-HHH-SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC---
T ss_pred HHHHHHH-HHh-CCCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHHc
Confidence 4455544 221 36788999999999999999877775 899999999 9999999887643
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.038 Score=45.77 Aligned_cols=103 Identities=13% Similarity=-0.063 Sum_probs=64.6
Q ss_pred CCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc-----CCCCCCC
Q psy8370 77 KSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF-----KPEDLNI 149 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~-----~~~~~~~ 149 (256)
....++.+||-+|+|. |.++..+++. |+.+|+++|.+++.++.+++. + . ..+...-.+. .......
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----G--a-~~i~~~~~~~~~~~~~~~~~g~ 253 (398)
T 2dph_A 181 AGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA----G--F-ETIDLRNSAPLRDQIDQILGKP 253 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT----T--C-EEEETTSSSCHHHHHHHHHSSS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----C--C-cEEcCCCcchHHHHHHHHhCCC
Confidence 4577889999999976 7788777764 555899999999887777542 2 1 2221111111 0000112
Q ss_pred ceeEEEechhhhc---------cCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 150 KYDVIWIQWVLMF---------ILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 150 ~~D~V~~~~~l~~---------~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+|+|+....-.. ++ ....++.+.+.|+++|.+++..
T Consensus 254 g~Dvvid~~g~~~~~~~~~~~~~~---~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 254 EVDCGVDAVGFEAHGLGDEANTET---PNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp CEEEEEECSCTTCBCSGGGTTSBC---TTHHHHHHHHHEEEEEEEECCS
T ss_pred CCCEEEECCCCccccccccccccc---cHHHHHHHHHHHhcCCEEEEec
Confidence 5999987644221 11 1135777889999999998753
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.032 Score=46.40 Aligned_cols=45 Identities=24% Similarity=0.488 Sum_probs=36.3
Q ss_pred CCeEEEEcCCCCHhHHHHHHh----c--CCeEEEEeCCHHHHHHHHHHHHh
Q psy8370 82 KTRVLDVGAGIGRISKYLLAK----H--FDKIDLLEQSSKFIEQAKEEILK 126 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~----~--~~~v~~vD~s~~~~~~a~~~~~~ 126 (256)
+.+|+|+|+|+|.++..++.. + ..+++.||+|+.+.+.-++++..
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 579999999999988877642 1 23799999999998888877764
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.035 Score=45.18 Aligned_cols=97 Identities=14% Similarity=0.067 Sum_probs=62.0
Q ss_pred CCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcc---cccc----CCCCCC
Q psy8370 78 SDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG---IQDF----KPEDLN 148 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d---~~~~----~~~~~~ 148 (256)
...++.+||-+|+|. |..+..++.. |+.+|+++|.++.-.+.+++. +.. ..+..+ ..++ .....
T Consensus 168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~--~vi~~~~~~~~~~~~~i~~~~~- 240 (356)
T 1pl8_A 168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD--LVLQISKESPQEIARKVEGQLG- 240 (356)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS--EEEECSSCCHHHHHHHHHHHHT-
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC--EEEcCcccccchHHHHHHHHhC-
Confidence 567889999999875 7777777664 454899999999877777642 211 222211 0111 00001
Q ss_pred CceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 149 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+.+|+|+....- ...++.+.+.|+|+|.+++..
T Consensus 241 ~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 241 CKPEVTIECTGA--------EASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp SCCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECS
T ss_pred CCCCEEEECCCC--------hHHHHHHHHHhcCCCEEEEEe
Confidence 259999875321 135677889999999998864
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.027 Score=44.64 Aligned_cols=74 Identities=14% Similarity=-0.004 Sum_probs=54.9
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCe--EEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--CCceeEE
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDK--IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--NIKYDVI 154 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~--v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--~~~~D~V 154 (256)
...+.+++|+-||.|.++..+...|+.. +.++|+++.+.+..+.++. .. .+..+|+.++....- .+.+|++
T Consensus 13 ~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~----~~-~~~~~DI~~i~~~~i~~~~~~Dll 87 (295)
T 2qrv_A 13 KRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ----GK-IMYVGDVRSVTQKHIQEWGPFDLV 87 (295)
T ss_dssp CCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT----TC-EEEECCGGGCCHHHHHHTCCCSEE
T ss_pred cCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC----CC-ceeCCChHHccHHHhcccCCcCEE
Confidence 3556799999999999999998888864 6899999998887766643 22 467888877653211 1258999
Q ss_pred Eec
Q psy8370 155 WIQ 157 (256)
Q Consensus 155 ~~~ 157 (256)
+..
T Consensus 88 ~gg 90 (295)
T 2qrv_A 88 IGG 90 (295)
T ss_dssp EEC
T ss_pred Eec
Confidence 965
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.13 Score=40.18 Aligned_cols=107 Identities=20% Similarity=0.114 Sum_probs=68.8
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCC------------HHHHHHHHHHHHhcCCCcceEEEccccccCC
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQS------------SKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 144 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s------------~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~ 144 (256)
-.++++|-.|++.|. ++..|++.|+ +|+.+|.+ ...++.+.......+.++ .++..|+.+...
T Consensus 8 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~ 85 (287)
T 3pxx_A 8 VQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKA-YTAEVDVRDRAA 85 (287)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCE-EEEECCTTCHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCce-EEEEccCCCHHH
Confidence 346788888887663 5666767787 89999987 666666666665555566 788888876532
Q ss_pred CCC--------CCceeEEEechhhhc----cCHHHHH-----------HHHHHHhhhcCCCcEEEEE
Q psy8370 145 EDL--------NIKYDVIWIQWVLMF----ILDEDII-----------KFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 145 ~~~--------~~~~D~V~~~~~l~~----~~~~~~~-----------~~l~~~~~~LkpgG~l~i~ 188 (256)
... .+.+|+++.+..... .+.+++. .+++.+.+.|+.+|.++..
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 152 (287)
T 3pxx_A 86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT 152 (287)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence 110 136899998754322 2223322 3456677777788888775
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.17 Score=39.12 Aligned_cols=108 Identities=6% Similarity=-0.009 Sum_probs=69.6
Q ss_pred CCCeEEEEcCC--CCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCC-------
Q psy8370 81 GKTRVLDVGAG--IGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDL------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G--~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~------- 147 (256)
.++++|-.|++ .|. ++..|++.|+ +|+.++.++...+.+.+.....+. ++ .++..|+.+......
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~v~~~~~~~~~ 83 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDS-IILPCDVTNDAEIETCFASIKE 83 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCC-EEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCc-eEEeCCCCCHHHHHHHHHHHHH
Confidence 46788888876 342 6677777787 899999887766666665554433 56 788889876532111
Q ss_pred -CCceeEEEechhhh----------ccCHHHHH-----------HHHHHHhhhcCCCcEEEEEec
Q psy8370 148 -NIKYDVIWIQWVLM----------FILDEDII-----------KFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 148 -~~~~D~V~~~~~l~----------~~~~~~~~-----------~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+.+|+++.+.... ..+.++.. .+++.+...++++|.++....
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 13689988765432 23333333 355677778888888887643
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.34 Score=44.78 Aligned_cols=154 Identities=12% Similarity=0.030 Sum_probs=89.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc------------CC--
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF------------KP-- 144 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~------------~~-- 144 (256)
....+++|+-||.|.++.-+...|+ ..+.++|+++.+.+.-+.++.. . .++..|+.++ ..
T Consensus 538 ~~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p~----~-~~~~~DI~~l~~~~~~~di~~~~~~~ 612 (1002)
T 3swr_A 538 LPKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPG----S-TVFTEDCNILLKLVMAGETTNSRGQR 612 (1002)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCTT----S-EEECSCHHHHHHHHHHTCSBCTTCCB
T ss_pred CCCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCCC----C-ccccccHHHHhhhccchhhhhhhhhh
Confidence 3456899999999999999988887 5788999999988877766532 2 4455554322 10
Q ss_pred CCCCCceeEEEechhhhccC------H---HH----HHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHH
Q psy8370 145 EDLNIKYDVIWIQWVLMFIL------D---ED----IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLP 211 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~~------~---~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 211 (256)
....+.+|+|+...-...++ . ++ +-..+-.+.+.++|. +++.++....... .......
T Consensus 613 lp~~~~vDll~GGpPCQ~FS~ag~~~~~~~~d~R~~L~~~~~riv~~~rPk--~~llENV~glls~-------~~~~~~~ 683 (1002)
T 3swr_A 613 LPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPR--FFLLENVRNFVSF-------KRSMVLK 683 (1002)
T ss_dssp CCCTTTCSEEEECCCCTTCCSSSCCCHHHHHHHTTSHHHHHHHHHHHHCCS--EEEEEEEGGGGTT-------GGGHHHH
T ss_pred cccCCCeeEEEEcCCCcchhhhCCCCCCcccchhhHHHHHHHHHHHHhCCC--EEEEeccHHHhcc-------CcchHHH
Confidence 00113689998653221110 0 11 111222344556774 4444544433211 0012346
Q ss_pred HHHHHHHhcCCcEEEeee---ecCCCCcceeeeEEEecc
Q psy8370 212 QFCLLFSKANLKCVKSEK---VTGMPKSLFKIYMFALKP 247 (256)
Q Consensus 212 ~~~~~l~~~gf~~~~~~~---~~~~~~~~~~~~~~~l~~ 247 (256)
.+.+.|...||.+..... .++.|..--.+++.+.++
T Consensus 684 ~i~~~L~~lGY~v~~~vLnA~dyGvPQ~R~R~fiva~r~ 722 (1002)
T 3swr_A 684 LTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAP 722 (1002)
T ss_dssp HHHHHHHHHTCEEEEEEEEGGGGTCSBCCEEEEEEEECT
T ss_pred HHHHHHHhcCCeEEEEEEEHHHCCCCccceEEEEEEEeC
Confidence 777888999998764332 355676666777766554
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.017 Score=47.36 Aligned_cols=99 Identities=12% Similarity=0.048 Sum_probs=63.6
Q ss_pred CCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE---ccccccCCC---CCCC
Q psy8370 78 SDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN---VGIQDFKPE---DLNI 149 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~---~d~~~~~~~---~~~~ 149 (256)
...++.+||-+|+|. |..+..++.. |+.+|+++|.++.-.+.+++.-. . ..+. .|+.+.... ...+
T Consensus 179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa----~--~vi~~~~~~~~~~i~~~~~~~~g 252 (370)
T 4ej6_A 179 GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGA----T--ATVDPSAGDVVEAIAGPVGLVPG 252 (370)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC----S--EEECTTSSCHHHHHHSTTSSSTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC----C--EEECCCCcCHHHHHHhhhhccCC
Confidence 567889999999864 6677777664 55589999999988887766311 1 1221 121111100 1112
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+|+|+-...- ...++.+.+.|+++|.+++...
T Consensus 253 g~Dvvid~~G~--------~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 253 GVDVVIECAGV--------AETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp CEEEEEECSCC--------HHHHHHHHHHEEEEEEEEECSC
T ss_pred CCCEEEECCCC--------HHHHHHHHHHhccCCEEEEEec
Confidence 69999975321 2467778899999999998643
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0097 Score=48.17 Aligned_cols=99 Identities=11% Similarity=0.043 Sum_probs=63.6
Q ss_pred cCCCCCCCeEEEEcCCC-CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc---CCCCCCCce
Q psy8370 76 KKSDPGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF---KPEDLNIKY 151 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~---~~~~~~~~~ 151 (256)
.....++.+||-+|+|. |..+..+++....+|+++|.+++-.+.+++. +.. ..+...-.+. .... .+.+
T Consensus 161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~--~~i~~~~~~~~~~~~~~-~g~~ 233 (340)
T 3s2e_A 161 VTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRL----GAE--VAVNARDTDPAAWLQKE-IGGA 233 (340)
T ss_dssp TTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCS--EEEETTTSCHHHHHHHH-HSSE
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc----CCC--EEEeCCCcCHHHHHHHh-CCCC
Confidence 34677889999999875 7888887765333999999999888877653 211 2221111111 0000 1258
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|+|+.... -...++.+.+.|+++|.+++..
T Consensus 234 d~vid~~g--------~~~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 234 HGVLVTAV--------SPKAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp EEEEESSC--------CHHHHHHHHHHEEEEEEEEECS
T ss_pred CEEEEeCC--------CHHHHHHHHHHhccCCEEEEeC
Confidence 98886532 0246777889999999998863
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.13 Score=39.76 Aligned_cols=107 Identities=17% Similarity=0.114 Sum_probs=71.7
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
+++++|--|++.|. .+..+++.|+ +|+.+|.+++.++.+.+.++..+.++ .++.+|+.+...... -+
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~~-~~~~~Dvt~~~~v~~~~~~~~~~~G 83 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEV-LGVKADVSKKKDVEEFVRRTFETYS 83 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCE-EEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcE-EEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46788888888774 6667777787 89999999998888888887766666 788889876532111 25
Q ss_pred ceeEEEechh-------hhccCHHHHHHH-----------HHHHhhhcC--CCcEEEEEe
Q psy8370 150 KYDVIWIQWV-------LMFILDEDIIKF-----------LNLCKQILN--KNGIIIIKD 189 (256)
Q Consensus 150 ~~D~V~~~~~-------l~~~~~~~~~~~-----------l~~~~~~Lk--pgG~l~i~~ 189 (256)
+.|+++.+.. +..++.+++.+. .+.+.+.|+ .+|.++...
T Consensus 84 ~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnis 143 (254)
T 4fn4_A 84 RIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTA 143 (254)
T ss_dssp CCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 7999998743 233444444333 234455542 367777653
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.089 Score=42.61 Aligned_cols=94 Identities=15% Similarity=0.060 Sum_probs=62.7
Q ss_pred CCCCCCCeEEEEcCCC-CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 77 KSDPGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
....++.+||-+|+|. |..+..+++....+|++++.+++-.+.+++. +.. ..+ .+.... .. .+|+|+
T Consensus 172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~--~v~-~~~~~~---~~--~~D~vi 239 (348)
T 3two_A 172 SKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSM----GVK--HFY-TDPKQC---KE--ELDFII 239 (348)
T ss_dssp TTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHT----TCS--EEE-SSGGGC---CS--CEEEEE
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc----CCC--eec-CCHHHH---hc--CCCEEE
Confidence 3678899999999874 6777777665333999999999888777652 211 233 332222 12 599998
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
....-. ..++.+.+.|+|+|.+++...
T Consensus 240 d~~g~~--------~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 240 STIPTH--------YDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp ECCCSC--------CCHHHHHTTEEEEEEEEECCC
T ss_pred ECCCcH--------HHHHHHHHHHhcCCEEEEECC
Confidence 753311 245567889999999998643
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.87 E-value=0.049 Score=40.14 Aligned_cols=96 Identities=17% Similarity=0.012 Sum_probs=59.1
Q ss_pred CCCCCCCeEEEEcC--CCCHhHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC------CCCC
Q psy8370 77 KSDPGKTRVLDVGA--GIGRISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK------PEDL 147 (256)
Q Consensus 77 ~~~~~~~~vLDiG~--G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~------~~~~ 147 (256)
....++.+||.+|+ |.|..+..++. .|. +|+++|.+++..+.+++ .+.. ... |..+.. ....
T Consensus 34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~--~~~--d~~~~~~~~~~~~~~~ 104 (198)
T 1pqw_A 34 GRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVE--YVG--DSRSVDFADEILELTD 104 (198)
T ss_dssp SCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCS--EEE--ETTCSTHHHHHHHHTT
T ss_pred hCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC--EEe--eCCcHHHHHHHHHHhC
Confidence 45678899999995 45555555544 465 89999999887666543 2211 111 222110 0001
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+.+|+|+.+.. . ..++.+.+.|+|+|.+++...
T Consensus 105 ~~~~D~vi~~~g------~---~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 105 GYGVDVVLNSLA------G---EAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp TCCEEEEEECCC------T---HHHHHHHHTEEEEEEEEECSC
T ss_pred CCCCeEEEECCc------h---HHHHHHHHHhccCCEEEEEcC
Confidence 125999997643 1 356778899999999988643
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.21 Score=38.49 Aligned_cols=79 Identities=13% Similarity=0.085 Sum_probs=54.0
Q ss_pred CCCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 80 PGKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 80 ~~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
..+++||-.|++.| .++..|++.|+ +|++++.++...+...+.+...+.++ .++..|+.+...... .
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~v~~~~~~~~~~~ 104 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEA-ESHACDLSHSDAIAAFATGVLAAH 104 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEE-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCce-eEEEecCCCHHHHHHHHHHHHHhc
Confidence 35678887887655 24555666677 89999999988887777776655566 788888876532110 1
Q ss_pred CceeEEEechhh
Q psy8370 149 IKYDVIWIQWVL 160 (256)
Q Consensus 149 ~~~D~V~~~~~l 160 (256)
+.+|+++.+...
T Consensus 105 g~id~lv~~Ag~ 116 (262)
T 3rkr_A 105 GRCDVLVNNAGV 116 (262)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 368999987543
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.1 Score=42.35 Aligned_cols=97 Identities=18% Similarity=0.045 Sum_probs=60.6
Q ss_pred CCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccc-cccC---C--CC--C
Q psy8370 78 SDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI-QDFK---P--ED--L 147 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~-~~~~---~--~~--~ 147 (256)
...++.+||-+|+|. |..+..++.. |+ +|+++|.+++-.+.+++. +.. ..+..+- .+.. . .. .
T Consensus 165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~--~~~~~~~~~~~~~~i~~~~~~~~ 237 (352)
T 1e3j_A 165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNC----GAD--VTLVVDPAKEEESSIIERIRSAI 237 (352)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT----TCS--EEEECCTTTSCHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh----CCC--EEEcCcccccHHHHHHHHhcccc
Confidence 567889999999864 6677776654 55 699999999888777642 211 2221110 1110 0 00 0
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
...+|+|+....- ...++.+.+.|+++|.+++..
T Consensus 238 g~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 238 GDLPNVTIDCSGN--------EKCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp SSCCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECS
T ss_pred CCCCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence 0259999876321 135677888999999998864
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.11 Score=42.47 Aligned_cols=101 Identities=14% Similarity=-0.028 Sum_probs=63.6
Q ss_pred ccCCCCCCCeEEEEcCCC-CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC----CCCCC
Q psy8370 75 QKKSDPGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----EDLNI 149 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~----~~~~~ 149 (256)
+.....++.+||-+|+|. |..+..+++....+|++++.++.-++.+++. +.. ..+..+..++.. .....
T Consensus 183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~v~~~~~g~ 256 (363)
T 3uog_A 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL----GAD--HGINRLEEDWVERVYALTGDR 256 (363)
T ss_dssp TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHHTTC
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHc----CCC--EEEcCCcccHHHHHHHHhCCC
Confidence 345678889999999774 6677776665333999999999888877653 111 222211111100 00112
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+|+|+....- ..++.+.+.|+|+|.+++...
T Consensus 257 g~D~vid~~g~---------~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 257 GADHILEIAGG---------AGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp CEEEEEEETTS---------SCHHHHHHHEEEEEEEEEECC
T ss_pred CceEEEECCCh---------HHHHHHHHHhhcCCEEEEEec
Confidence 69999976441 245567789999999998743
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.59 Score=42.31 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=37.0
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc------CCeEEEEeCCHHHHHHHHHHH
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH------FDKIDLLEQSSKFIEQAKEEI 124 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~------~~~v~~vD~s~~~~~~a~~~~ 124 (256)
.+..+|+|+-||.|.++.-+...| +.-+.++|+++.+++.-+.++
T Consensus 210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 445789999999999998886665 556889999999888877764
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.72 E-value=0.019 Score=46.67 Aligned_cols=101 Identities=13% Similarity=-0.058 Sum_probs=63.9
Q ss_pred cCCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc---cccccCC-CCCCC
Q psy8370 76 KKSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV---GIQDFKP-EDLNI 149 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~---d~~~~~~-~~~~~ 149 (256)
.....++.+||-+|+|. |.++..+++. |+.+|+++|.+++-++.+++.-. . .++.. ++.+... ..+..
T Consensus 161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa----~--~vi~~~~~~~~~~v~~~t~g~ 234 (352)
T 3fpc_A 161 LANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGA----T--DIINYKNGDIVEQILKATDGK 234 (352)
T ss_dssp HTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTC----C--EEECGGGSCHHHHHHHHTTTC
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC----c--eEEcCCCcCHHHHHHHHcCCC
Confidence 34678889999999874 6777777665 44489999999988887766411 1 22211 1111100 00112
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+|+|+....- ...++.+.+.|+|+|.+++...
T Consensus 235 g~D~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 235 GVDKVVIAGGD--------VHTFAQAVKMIKPGSDIGNVNY 267 (352)
T ss_dssp CEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECCC
T ss_pred CCCEEEECCCC--------hHHHHHHHHHHhcCCEEEEecc
Confidence 59999865321 1356778889999999998643
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.04 Score=44.94 Aligned_cols=101 Identities=13% Similarity=-0.069 Sum_probs=64.2
Q ss_pred CCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE-----ccccccC-CCCCC
Q psy8370 77 KSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN-----VGIQDFK-PEDLN 148 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~-----~d~~~~~-~~~~~ 148 (256)
....++.+||-+|+|. |..+..+++. |+..|+++|.+++-.+.+++. .. .+..+.. .++.+.. ...+.
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~---~~~~~~~~~~~~~~~~~~v~~~t~g 250 (363)
T 3m6i_A 175 AGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP---EVVTHKVERLSAEESAKKIVESFGG 250 (363)
T ss_dssp HTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT---TCEEEECCSCCHHHHHHHHHHHTSS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch---hcccccccccchHHHHHHHHHHhCC
Confidence 3567889999999864 6777777665 554599999999988888875 32 1201111 1111110 00011
Q ss_pred CceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 149 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
..+|+|+-...- ...++.+.+.|+++|.+++..
T Consensus 251 ~g~Dvvid~~g~--------~~~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 251 IEPAVALECTGV--------ESSIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp CCCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECC
T ss_pred CCCCEEEECCCC--------hHHHHHHHHHhcCCCEEEEEc
Confidence 269999975331 135677889999999999864
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.13 Score=42.46 Aligned_cols=104 Identities=13% Similarity=-0.014 Sum_probs=64.4
Q ss_pred CCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcc----ccc-cCCCCCCC
Q psy8370 77 KSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG----IQD-FKPEDLNI 149 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d----~~~-~~~~~~~~ 149 (256)
....++.+||-+|+|. |.++..+++. |+..|+++|.+++-++.+++. + . ..+... +.+ ........
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l----G--a-~~i~~~~~~~~~~~v~~~t~g~ 253 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----G--F-EIADLSLDTPLHEQIAALLGEP 253 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T--C-EEEETTSSSCHHHHHHHHHSSS
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc----C--C-cEEccCCcchHHHHHHHHhCCC
Confidence 4567889999999865 7777777765 555799999999888877643 2 1 222111 100 00000112
Q ss_pred ceeEEEechhhh---------ccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 150 KYDVIWIQWVLM---------FILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 150 ~~D~V~~~~~l~---------~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+|+|+-...-. +.+ .....++.+.+.|+++|.+++..
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 254 EVDCAVDAVGFEARGHGHEGAKHE--APATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp CEEEEEECCCTTCBCSSTTGGGSB--CTTHHHHHHHHHEEEEEEEEECS
T ss_pred CCCEEEECCCCccccccccccccc--chHHHHHHHHHHHhcCCEEEEec
Confidence 599999764321 111 11246778889999999998754
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.60 E-value=0.12 Score=42.17 Aligned_cols=96 Identities=18% Similarity=0.097 Sum_probs=61.1
Q ss_pred CCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc-CCCCCCCceeE
Q psy8370 77 KSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF-KPEDLNIKYDV 153 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~-~~~~~~~~~D~ 153 (256)
....++.+||-+|+|. |..+..++.. |+ +|++++.+++-++.+++. +.. .++...-.+. ..... .+|+
T Consensus 190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~l----Ga~--~vi~~~~~~~~~~~~~--g~Dv 260 (369)
T 1uuf_A 190 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKAL----GAD--EVVNSRNADEMAAHLK--SFDF 260 (369)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TCS--EEEETTCHHHHHTTTT--CEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCc--EEeccccHHHHHHhhc--CCCE
Confidence 3567889999999874 6777777654 45 799999999888877652 111 2222111111 00112 6999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|+....-. ..++.+.+.|+++|.+++..
T Consensus 261 vid~~g~~--------~~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 261 ILNTVAAP--------HNLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp EEECCSSC--------CCHHHHHTTEEEEEEEEECC
T ss_pred EEECCCCH--------HHHHHHHHHhccCCEEEEec
Confidence 98764321 23556778999999998753
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.12 Score=40.03 Aligned_cols=107 Identities=14% Similarity=0.104 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
+++++|--|++.|. .+..|++.|+ +|+.+|.+++.++.+.+.+...+.+. ..+.+|+.+..... .-+
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~-~~~~~Dv~~~~~v~~~~~~~~~~~G 85 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDA-HGVAFDVTDELAIEAAFSKLDAEGI 85 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCE-EECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcE-EEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 56788877877763 5667777787 89999999998888777777666566 77788876643211 125
Q ss_pred ceeEEEechh------hhccCHHHHHH-----------HHHHHhhhc---CCCcEEEEEe
Q psy8370 150 KYDVIWIQWV------LMFILDEDIIK-----------FLNLCKQIL---NKNGIIIIKD 189 (256)
Q Consensus 150 ~~D~V~~~~~------l~~~~~~~~~~-----------~l~~~~~~L---kpgG~l~i~~ 189 (256)
+.|+++.+.. +..++.+++.+ +.+.+.+.| +.+|.++...
T Consensus 86 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnis 145 (255)
T 4g81_D 86 HVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIG 145 (255)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEe
Confidence 7999998743 33444444333 234455555 2467777653
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.037 Score=44.56 Aligned_cols=96 Identities=19% Similarity=0.113 Sum_probs=60.3
Q ss_pred cCCCCCCCeEEEEcC--CCCHhHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccc---c---CCCC
Q psy8370 76 KKSDPGKTRVLDVGA--GIGRISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD---F---KPED 146 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~--G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~---~---~~~~ 146 (256)
.....++.+||-.|+ |.|..+..++. .|+ +|+++|.+++.++.+++. +.. ... |..+ . ....
T Consensus 140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~----g~~--~~~--d~~~~~~~~~~~~~~ 210 (333)
T 1v3u_A 140 VCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQI----GFD--AAF--NYKTVNSLEEALKKA 210 (333)
T ss_dssp TSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT----TCS--EEE--ETTSCSCHHHHHHHH
T ss_pred hhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhc----CCc--EEE--ecCCHHHHHHHHHHH
Confidence 346678899999997 45666655554 456 899999998877766332 211 111 2221 1 0000
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
..+.+|+++.+..- ..++.+.+.|+++|.+++..
T Consensus 211 ~~~~~d~vi~~~g~---------~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 211 SPDGYDCYFDNVGG---------EFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp CTTCEEEEEESSCH---------HHHHHHHTTEEEEEEEEECC
T ss_pred hCCCCeEEEECCCh---------HHHHHHHHHHhcCCEEEEEe
Confidence 01269999877541 24677889999999998764
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.17 Score=41.92 Aligned_cols=46 Identities=22% Similarity=0.038 Sum_probs=37.6
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhc--CCe----EEEEeCCHHHHHHHHHHHHh
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKH--FDK----IDLLEQSSKFIEQAKEEILK 126 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~--~~~----v~~vD~s~~~~~~a~~~~~~ 126 (256)
+..+|+|+-||.|.+...+.+.| +.- |.++|+++.+.+.-+.++..
T Consensus 9 ~~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~ 60 (403)
T 4dkj_A 9 KVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK 60 (403)
T ss_dssp EEEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred ccceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence 34689999999999999987777 444 78899999998887777653
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.051 Score=44.40 Aligned_cols=94 Identities=12% Similarity=0.004 Sum_probs=60.5
Q ss_pred CCCeEEEEc-C-CCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc--cccccCCCCCCCceeEEE
Q psy8370 81 GKTRVLDVG-A-GIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV--GIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 81 ~~~~vLDiG-~-G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~--d~~~~~~~~~~~~~D~V~ 155 (256)
++.+||-+| + |.|..+..+++. +..+|++++.+++-.+.+++. +.. .++.. ++.+.......+.+|+|+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l----Gad--~vi~~~~~~~~~v~~~~~~g~Dvvi 244 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL----GAH--HVIDHSKPLAAEVAALGLGAPAFVF 244 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT----TCS--EEECTTSCHHHHHHTTCSCCEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc----CCC--EEEeCCCCHHHHHHHhcCCCceEEE
Confidence 678999998 4 457888888875 455999999999877777652 211 12211 111110000113699998
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.... -...++.+.+.|+++|.+++.
T Consensus 245 d~~g--------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 245 STTH--------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp ECSC--------HHHHHHHHHHHSCTTCEEEEC
T ss_pred ECCC--------chhhHHHHHHHhcCCCEEEEE
Confidence 7532 124677888999999999986
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.038 Score=45.29 Aligned_cols=101 Identities=16% Similarity=0.061 Sum_probs=63.0
Q ss_pred ccCCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc-----cccccCCCCC
Q psy8370 75 QKKSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-----GIQDFKPEDL 147 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~-----d~~~~~~~~~ 147 (256)
+.....++.+||-+|+|. |.++..+++. |+.+|+++|.++.-.+.+++. +.. ..+.. ++.+......
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~~~v~~~~ 257 (373)
T 2fzw_A 184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT--ECINPQDFSKPIQEVLIEMT 257 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS--EEECGGGCSSCHHHHHHHHT
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc--eEeccccccccHHHHHHHHh
Confidence 344677889999999864 6666676654 554899999999888877643 111 22211 1111000000
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCC-cEEEEEe
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKN-GIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 189 (256)
.+.+|+|+....- ...++.+.+.|+++ |.+++..
T Consensus 258 ~~g~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 258 DGGVDYSFECIGN--------VKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp TSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECS
T ss_pred CCCCCEEEECCCc--------HHHHHHHHHhhccCCcEEEEEe
Confidence 1259999875321 24567788999999 9998864
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.32 E-value=0.076 Score=42.06 Aligned_cols=91 Identities=5% Similarity=-0.027 Sum_probs=51.3
Q ss_pred eEEEccccccCCCCCCCceeEEEechhhh----ccC----------H----HHHHHHHHHHhhhcCCCcEEEEEecccCC
Q psy8370 133 KCYNVGIQDFKPEDLNIKYDVIWIQWVLM----FIL----------D----EDIIKFLNLCKQILNKNGIIIIKDNVASG 194 (256)
Q Consensus 133 ~~~~~d~~~~~~~~~~~~~D~V~~~~~l~----~~~----------~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 194 (256)
.++++|..+.......++||+|+++=-.. +.. . ..+..+++++.++|+|||.+++.......
T Consensus 23 ~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~~~ 102 (297)
T 2zig_A 23 RLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDVAV 102 (297)
T ss_dssp EEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCEEE
T ss_pred EEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCCcc
Confidence 78899988743221124899999872110 000 0 12356788999999999999886321110
Q ss_pred CCccccCCCCceeeC-HHHHHHHHHhcCCcEEE
Q psy8370 195 VKNEYDDEDSSVVRS-LPQFCLLFSKANLKCVK 226 (256)
Q Consensus 195 ~~~~~~~~~~~~~~~-~~~~~~~l~~~gf~~~~ 226 (256)
.. .......... ...+..++++.||....
T Consensus 103 ~~---~~~g~~~~~~~~~~l~~~~~~~Gf~~~~ 132 (297)
T 2zig_A 103 AR---RRFGRHLVFPLHADIQVRCRKLGFDNLN 132 (297)
T ss_dssp EC---C----EEEECHHHHHHHHHHHTTCEEEE
T ss_pred cc---ccCCcccccccHHHHHHHHHHcCCeeec
Confidence 00 0000000111 25677889999997764
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.21 Score=38.45 Aligned_cols=107 Identities=10% Similarity=-0.055 Sum_probs=66.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEE-eCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLL-EQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~v-D~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
.++++|-.|++.|. ++..|+++|+ +|+.+ +.++...+...+.+...+.++ .++.+|+.+...... .
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSA-LAIKADLTNAAEVEAAISAAADKF 84 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCC-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCce-EEEEcCCCCHHHHHHHHHHHHHHh
Confidence 46788888887763 5666767787 77777 677766666666665555566 788889876532110 1
Q ss_pred CceeEEEechhhh-------ccCHHHHH-----------HHHHHHhhhcCCCcEEEEEe
Q psy8370 149 IKYDVIWIQWVLM-------FILDEDII-----------KFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~l~-------~~~~~~~~-----------~~l~~~~~~LkpgG~l~i~~ 189 (256)
+..|+++.+.... ..+.+++. .+.+.+.+.++++|.++...
T Consensus 85 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 85 GEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp CSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 3689999775322 22323322 34556666777778777653
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.032 Score=45.71 Aligned_cols=101 Identities=15% Similarity=-0.018 Sum_probs=63.1
Q ss_pred ccCCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc-----cccccCCCCC
Q psy8370 75 QKKSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-----GIQDFKPEDL 147 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~-----d~~~~~~~~~ 147 (256)
+.....++.+||-+|+|. |..+..+++. |+.+|+++|.+++-.+.+++. +.. ..+.. ++.+......
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~--~vi~~~~~~~~~~~~i~~~t 258 (373)
T 1p0f_A 185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GAT--ECLNPKDYDKPIYEVICEKT 258 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TCS--EEECGGGCSSCHHHHHHHHT
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc--EEEecccccchHHHHHHHHh
Confidence 344677889999999864 6677777654 554899999999887777642 211 22211 1111000000
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCC-cEEEEEe
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKN-GIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 189 (256)
.+.+|+|+....- ...++.+.+.|+++ |.+++..
T Consensus 259 ~gg~Dvvid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 259 NGGVDYAVECAGR--------IETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp TSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECC
T ss_pred CCCCCEEEECCCC--------HHHHHHHHHHHhcCCCEEEEEc
Confidence 1269999875321 24567788999999 9998764
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.055 Score=43.79 Aligned_cols=93 Identities=14% Similarity=0.065 Sum_probs=60.5
Q ss_pred CCCCCCeEEEEcCCC-CHhHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE----ccc-cccCCCCCC
Q psy8370 78 SDPGKTRVLDVGAGI-GRISKYLLAK---HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN----VGI-QDFKPEDLN 148 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~-G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~----~d~-~~~~~~~~~ 148 (256)
.. ++.+||-+|+|. |..+..+++. |. +|++++.+++-.+.+++. +.. .++. .+. .... ..
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~~~~-~g-- 236 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALEL----GAD--YVSEMKDAESLINKLT-DG-- 236 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHH----TCS--EEECHHHHHHHHHHHH-TT--
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHh----CCC--EEeccccchHHHHHhh-cC--
Confidence 45 789999999864 6667776654 45 899999999888877653 111 2221 111 1111 11
Q ss_pred CceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 149 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
..+|+|+....- ...++.+.+.|+++|.+++..
T Consensus 237 ~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 237 LGASIAIDLVGT--------EETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp CCEEEEEESSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred CCccEEEECCCC--------hHHHHHHHHHhhcCCEEEEeC
Confidence 259999976431 135677889999999998864
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.018 Score=46.70 Aligned_cols=98 Identities=11% Similarity=0.079 Sum_probs=63.2
Q ss_pred CCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcc--ccccCC-CCCCCcee
Q psy8370 78 SDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG--IQDFKP-EDLNIKYD 152 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d--~~~~~~-~~~~~~~D 152 (256)
...++.+||-+|+|. |..+..+++. +..+|+++|.+++-.+.+++. +.. ..+..+ ..+... ..+...+|
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l----Ga~--~~i~~~~~~~~~v~~~t~g~g~d 241 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV----GAD--AAVKSGAGAADAIRELTGGQGAT 241 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT----TCS--EEEECSTTHHHHHHHHHGGGCEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCC--EEEcCCCcHHHHHHHHhCCCCCe
Confidence 467889999999875 7777777765 356999999999888877653 211 222211 111000 00012599
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+-...- ...++.+.+.|+++|.+++..
T Consensus 242 ~v~d~~G~--------~~~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 242 AVFDFVGA--------QSTIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp EEEESSCC--------HHHHHHHHHHEEEEEEEEECS
T ss_pred EEEECCCC--------HHHHHHHHHHHhcCCEEEEEC
Confidence 99875331 236778889999999999864
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.029 Score=46.00 Aligned_cols=101 Identities=13% Similarity=0.000 Sum_probs=62.8
Q ss_pred ccCCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc-----cccccCCCCC
Q psy8370 75 QKKSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-----GIQDFKPEDL 147 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~-----d~~~~~~~~~ 147 (256)
+.....++.+||-+|+|. |..+..+++. |+.+|+++|.++.-++.+++. +.. ..+.. ++.+......
T Consensus 186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~~~~~~~~ 259 (374)
T 1cdo_A 186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF----GAT--DFVNPNDHSEPISQVLSKMT 259 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCC--EEECGGGCSSCHHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CCc--eEEeccccchhHHHHHHHHh
Confidence 344677889999999864 6677777654 444899999999888877642 211 22211 1111000000
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCC-cEEEEEe
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKN-GIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 189 (256)
.+.+|+|+....- ...++.+.+.|+++ |.+++..
T Consensus 260 ~~g~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 260 NGGVDFSLECVGN--------VGVMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp TSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECS
T ss_pred CCCCCEEEECCCC--------HHHHHHHHHHhhcCCcEEEEEc
Confidence 1259999875321 24567788999999 9998864
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=94.11 E-value=0.04 Score=45.13 Aligned_cols=101 Identities=16% Similarity=0.057 Sum_probs=62.5
Q ss_pred ccCCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc-----cccccCCCCC
Q psy8370 75 QKKSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-----GIQDFKPEDL 147 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~-----d~~~~~~~~~ 147 (256)
+.....++.+||-+|+|. |..+..+++. |+.+|+++|.+++-.+.+++. +.. ..+.. ++.+......
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~~~~~~~~ 258 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GAT--ECVNPQDYKKPIQEVLTEMS 258 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS--EEECGGGCSSCHHHHHHHHT
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCc--eEecccccchhHHHHHHHHh
Confidence 344677889999999864 6667776654 444899999999888777542 211 22211 1111000000
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCC-cEEEEEe
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKN-GIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 189 (256)
.+.+|+|+....- ...++.+.+.|+++ |.+++..
T Consensus 259 ~~g~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 259 NGGVDFSFEVIGR--------LDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp TSCBSEEEECSCC--------HHHHHHHHHHBCTTTCEEEECS
T ss_pred CCCCcEEEECCCC--------HHHHHHHHHHhhcCCcEEEEec
Confidence 1269999875321 14567788999999 9998753
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.13 Score=40.95 Aligned_cols=91 Identities=22% Similarity=0.199 Sum_probs=59.1
Q ss_pred ccCCCCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCcee
Q psy8370 75 QKKSDPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
+.....++.+||-+|+| .|..+..+++. |+ +|++++ +++-.+.+++. + ....+ .|..+. . +.+|
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~l----G--a~~v~-~d~~~v---~--~g~D 201 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKR----G--VRHLY-REPSQV---T--QKYF 201 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHH----T--EEEEE-SSGGGC---C--SCEE
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHc----C--CCEEE-cCHHHh---C--CCcc
Confidence 44567889999999995 36777777664 55 999999 88877777653 1 11223 232222 2 3699
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+|+-...- ..+..+.+.|+++|.+++.
T Consensus 202 vv~d~~g~---------~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 202 AIFDAVNS---------QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp EEECC----------------TTGGGEEEEEEEEEE
T ss_pred EEEECCCc---------hhHHHHHHHhcCCCEEEEE
Confidence 99875331 1224568899999999886
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.027 Score=45.40 Aligned_cols=99 Identities=11% Similarity=0.061 Sum_probs=61.5
Q ss_pred cCCCCCCCeEEEEcC--CCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC---CCCCCC
Q psy8370 76 KKSDPGKTRVLDVGA--GIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK---PEDLNI 149 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~---~~~~~~ 149 (256)
.....++.+||-+|+ |.|..+..++.. |+ +|++++.+++-.+.+.+.+ +.. ..+...-.++. .....+
T Consensus 144 ~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~~---g~~--~~~~~~~~~~~~~~~~~~~~ 217 (336)
T 4b7c_A 144 VGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEEL---GFD--GAIDYKNEDLAAGLKRECPK 217 (336)
T ss_dssp TTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTT---CCS--EEEETTTSCHHHHHHHHCTT
T ss_pred hcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---CCC--EEEECCCHHHHHHHHHhcCC
Confidence 446788999999998 456677666654 55 9999999988777663222 211 12211111110 000012
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+|+|+.+..- ..++.+.+.|+++|.+++..
T Consensus 218 ~~d~vi~~~g~---------~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 218 GIDVFFDNVGG---------EILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp CEEEEEESSCH---------HHHHHHHTTEEEEEEEEECC
T ss_pred CceEEEECCCc---------chHHHHHHHHhhCCEEEEEe
Confidence 69999876431 35677889999999999864
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.72 Score=36.21 Aligned_cols=108 Identities=11% Similarity=0.022 Sum_probs=67.8
Q ss_pred CCCCeEEEEcCCCC-----HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC-------
Q psy8370 80 PGKTRVLDVGAGIG-----RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL------- 147 (256)
Q Consensus 80 ~~~~~vLDiG~G~G-----~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~------- 147 (256)
-.++++|-.|++.| .++..|++.|+ +|+.++.++...+.+.+.....+ ++ .++.+|+.+......
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~-~~~~~Dv~d~~~v~~~~~~~~~ 105 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELG-AF-VAGHCDVADAASIDAVFETLEK 105 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHT-CE-EEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-Cc-eEEECCCCCHHHHHHHHHHHHH
Confidence 35678998997633 36667777787 79999998766555555444333 45 778888876532110
Q ss_pred -CCceeEEEechhhh----------ccCHHHH-----------HHHHHHHhhhcCCCcEEEEEec
Q psy8370 148 -NIKYDVIWIQWVLM----------FILDEDI-----------IKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 148 -~~~~D~V~~~~~l~----------~~~~~~~-----------~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+.+|+++.+.... ..+.+++ ..+.+.+.+.++.+|.++....
T Consensus 106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS 170 (293)
T 3grk_A 106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY 170 (293)
T ss_dssp HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence 14789999875432 2233332 2345566777778888887643
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.029 Score=46.05 Aligned_cols=101 Identities=17% Similarity=0.069 Sum_probs=63.4
Q ss_pred ccCCCCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc-----cccccCCCCC
Q psy8370 75 QKKSDPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-----GIQDFKPEDL 147 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~-----d~~~~~~~~~ 147 (256)
+.....++.+||-+|+| .|.++..+++. |+.+|+++|.++.-++.+++. + ....+.. ++.+......
T Consensus 187 ~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l----G--a~~vi~~~~~~~~~~~~i~~~~ 260 (378)
T 3uko_A 187 NTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF----G--VNEFVNPKDHDKPIQEVIVDLT 260 (378)
T ss_dssp TTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT----T--CCEEECGGGCSSCHHHHHHHHT
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C--CcEEEccccCchhHHHHHHHhc
Confidence 44567788999999986 36677777654 555899999999888877542 2 1022211 1111000000
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCC-cEEEEEe
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKN-GIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 189 (256)
.+.+|+|+-...- ...++.+.+.|++| |.+++..
T Consensus 261 ~gg~D~vid~~g~--------~~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 261 DGGVDYSFECIGN--------VSVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp TSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECS
T ss_pred CCCCCEEEECCCC--------HHHHHHHHHHhhccCCEEEEEc
Confidence 1269999875331 24677888999996 9998864
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.33 Score=37.63 Aligned_cols=106 Identities=18% Similarity=0.045 Sum_probs=65.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEE-eCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLL-EQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~v-D~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
.++++|-.|++.|. ++..|++.|+ +|+.+ ..++...+...+.+...+.++ .++..|+.+...... .
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~v~~~~~~~~~~~ 103 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAGGKA-LTAQADVSDPAAVRRLFATAEEAF 103 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTTCCE-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeE-EEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46788888877763 6666777787 67776 455556666666665555566 778888876532110 1
Q ss_pred CceeEEEechhh------hccCHHHHH-----------HHHHHHhhhcCCCcEEEEE
Q psy8370 149 IKYDVIWIQWVL------MFILDEDII-----------KFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 149 ~~~D~V~~~~~l------~~~~~~~~~-----------~~l~~~~~~LkpgG~l~i~ 188 (256)
+..|+++.+... ...+.+++. .+++.+.+.++++|.++..
T Consensus 104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~i 160 (267)
T 3u5t_A 104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINM 160 (267)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEE
Confidence 368999987542 222333322 3455667777778888775
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.39 Score=37.71 Aligned_cols=106 Identities=14% Similarity=0.066 Sum_probs=65.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHH-HHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSK-FIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~-~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
.++++|-.|++.|. ++..|++.|+ +|+.++.++. ..+...+.....+.++ .++.+|+.+...... .
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~~~~ 123 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKC-VLLPGDLSDEQHCKDIVQETVRQL 123 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCE-EEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCcE-EEEECCCCCHHHHHHHHHHHHHHc
Confidence 46788888877663 5566667777 8999988764 3444444444444566 788888876432110 1
Q ss_pred CceeEEEechhh-------hccCHHHHH-----------HHHHHHhhhcCCCcEEEEE
Q psy8370 149 IKYDVIWIQWVL-------MFILDEDII-----------KFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 149 ~~~D~V~~~~~l-------~~~~~~~~~-----------~~l~~~~~~LkpgG~l~i~ 188 (256)
+.+|+++.+... ...+.+++. .+++.+.+.++.+|.++..
T Consensus 124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i 181 (291)
T 3ijr_A 124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT 181 (291)
T ss_dssp SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence 368999977432 222333322 3455667777888887775
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.058 Score=43.55 Aligned_cols=100 Identities=14% Similarity=-0.004 Sum_probs=61.3
Q ss_pred ccCCCCCCCeEEEEcCC--CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC---C-CCC
Q psy8370 75 QKKSDPGKTRVLDVGAG--IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK---P-EDL 147 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G--~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~---~-~~~ 147 (256)
+.....++.+||-+|+| .|..+..++.. |+ +|++++.+++-++.+++. +.. ..+...-.++. . ...
T Consensus 138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----ga~--~~~~~~~~~~~~~~~~~~~ 210 (340)
T 3gms_A 138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRL----GAA--YVIDTSTAPLYETVMELTN 210 (340)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS--EEEETTTSCHHHHHHHHTT
T ss_pred HhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhC----CCc--EEEeCCcccHHHHHHHHhC
Confidence 44567889999999987 56677666654 55 899999998878877653 111 12211111110 0 001
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
...+|+|+.+..-. ......+.|+++|.+++...
T Consensus 211 ~~g~Dvvid~~g~~---------~~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 211 GIGADAAIDSIGGP---------DGNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp TSCEEEEEESSCHH---------HHHHHHHTEEEEEEEEECCC
T ss_pred CCCCcEEEECCCCh---------hHHHHHHHhcCCCEEEEEee
Confidence 12699998764321 12234478999999998643
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=93.85 E-value=1 Score=30.87 Aligned_cols=94 Identities=15% Similarity=0.081 Sum_probs=55.5
Q ss_pred CCeEEEEcCCC-CH-hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC--CCCCceeEEEec
Q psy8370 82 KTRVLDVGAGI-GR-ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIWIQ 157 (256)
Q Consensus 82 ~~~vLDiG~G~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~--~~~~~~D~V~~~ 157 (256)
..+|+=+|+|. |. ++..|.+.|. +|+++|.+++.++.+++. .+ .++.+|..+.... .+...+|+|++.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~------g~-~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRER------GV-RAVLGNAANEEIMQLAHLECAKWLILT 78 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT------TC-EEEESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHc------CC-CEEECCCCCHHHHHhcCcccCCEEEEE
Confidence 46788898864 33 3344444566 899999999887766541 34 6677787554211 111258888865
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.- ++.....+-...+.+.|+..++..
T Consensus 79 ~~-----~~~~n~~~~~~a~~~~~~~~iiar 104 (140)
T 3fwz_A 79 IP-----NGYEAGEIVASARAKNPDIEIIAR 104 (140)
T ss_dssp CS-----CHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred CC-----ChHHHHHHHHHHHHHCCCCeEEEE
Confidence 22 122122233455667788876653
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.24 Score=37.92 Aligned_cols=77 Identities=13% Similarity=0.080 Sum_probs=54.4
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|=.|++.| .++..|++.|+ +|+.++.+++..+...+.+...+.++ .++..|+.+...... .+
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTA-ISVAVDVSDPESAKAMADRTLAEFG 85 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEE-EEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcE-EEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678888887666 35666667777 89999999988887777776655566 778888876532110 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 86 ~id~li~~Ag 95 (253)
T 3qiv_A 86 GIDYLVNNAA 95 (253)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899998754
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.79 E-value=0.41 Score=36.91 Aligned_cols=77 Identities=12% Similarity=0.069 Sum_probs=55.9
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
-.++++|-.|++.|. ++..|++.|+ +|+.++.+++.++...+.+...+.++ .++..|+.+...... .
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (264)
T 3ucx_A 9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRA-LSVGTDITDDAQVAHLVDETMKAY 86 (264)
T ss_dssp TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCE-EEEECCTTCHHHHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCCcE-EEEEcCCCCHHHHHHHHHHHHHHc
Confidence 356788988887773 6667777787 89999999988887777776655566 788889876532110 2
Q ss_pred CceeEEEech
Q psy8370 149 IKYDVIWIQW 158 (256)
Q Consensus 149 ~~~D~V~~~~ 158 (256)
+..|+++.+.
T Consensus 87 g~id~lv~nA 96 (264)
T 3ucx_A 87 GRVDVVINNA 96 (264)
T ss_dssp SCCSEEEECC
T ss_pred CCCcEEEECC
Confidence 4689999875
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.041 Score=45.16 Aligned_cols=101 Identities=14% Similarity=-0.002 Sum_probs=62.5
Q ss_pred ccCCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc-----cccccCCCCC
Q psy8370 75 QKKSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-----GIQDFKPEDL 147 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~-----d~~~~~~~~~ 147 (256)
+.....++.+||-+|+|. |..+..+++. |+.+|+++|.+++-.+.+++. +.. ..+.. ++.+......
T Consensus 189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~--~vi~~~~~~~~~~~~v~~~~ 262 (376)
T 1e3i_A 189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GAT--DCLNPRELDKPVQDVITELT 262 (376)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS--EEECGGGCSSCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCc--EEEccccccchHHHHHHHHh
Confidence 344677889999999863 6677777664 454899999999877777542 211 22211 1111000000
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCC-cEEEEEe
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKN-GIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 189 (256)
.+.+|+|+....- ...++.+.+.|+++ |.+++..
T Consensus 263 ~~g~Dvvid~~G~--------~~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 263 AGGVDYSLDCAGT--------AQTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp TSCBSEEEESSCC--------HHHHHHHHHTBCTTTCEEEECC
T ss_pred CCCccEEEECCCC--------HHHHHHHHHHhhcCCCEEEEEC
Confidence 1259999865321 24567788999999 9998754
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.73 E-value=0.53 Score=36.25 Aligned_cols=108 Identities=11% Similarity=0.015 Sum_probs=67.3
Q ss_pred CCCCCeEEEEcCC--CCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC------
Q psy8370 79 DPGKTRVLDVGAG--IGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL------ 147 (256)
Q Consensus 79 ~~~~~~vLDiG~G--~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~------ 147 (256)
..++++||-.|++ .|. ++..|+++|+ +|+.++.++...+.+++.....+ .+ .++.+|+.+......
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~-~~~~~Dv~~~~~v~~~~~~~~ 87 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFG-SE-LVFPCDVADDAQIDALFASLK 87 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT-CC-CEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcC-Cc-EEEECCCCCHHHHHHHHHHHH
Confidence 4567899989975 442 5566666777 89999988765555555444333 45 788888876532110
Q ss_pred --CCceeEEEechhhhc-----------cCHHHHH-----------HHHHHHhhhcCCCcEEEEEe
Q psy8370 148 --NIKYDVIWIQWVLMF-----------ILDEDII-----------KFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 148 --~~~~D~V~~~~~l~~-----------~~~~~~~-----------~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+.+|+++.+..... .+.+++. .+++.+.+.++++|.++...
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 153 (271)
T 3ek2_A 88 THWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 153 (271)
T ss_dssp HHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence 247899998754321 3333333 34455666777778777754
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=93.72 E-value=0.51 Score=36.51 Aligned_cols=109 Identities=16% Similarity=0.047 Sum_probs=68.0
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeC-CHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQ-SSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~-s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-------- 147 (256)
-.++++|-.|++.|. ++..|++.|+ +|+.++. ++...+...+.+...+.++ .++..|+.+......
T Consensus 16 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~~~ 93 (270)
T 3is3_A 16 LDGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDA-IAIKADIRQVPEIVKLFDQAVAH 93 (270)
T ss_dssp CTTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCE-EEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcE-EEEEcCCCCHHHHHHHHHHHHHH
Confidence 346788888877663 5566667777 7888765 4555666666565555566 788888876532110
Q ss_pred CCceeEEEechhhh------ccCHHHHH-----------HHHHHHhhhcCCCcEEEEEec
Q psy8370 148 NIKYDVIWIQWVLM------FILDEDII-----------KFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 148 ~~~~D~V~~~~~l~------~~~~~~~~-----------~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+..|+++.+.... ..+.+++. .+.+.+.+.++++|.++....
T Consensus 94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 13689999774432 22333322 345667778888888887643
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=93.69 E-value=0.34 Score=37.21 Aligned_cols=105 Identities=12% Similarity=0.143 Sum_probs=67.0
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
..++++|-.|++.|. ++..|++.|+ +|+.++.+++.++...+.+. .++ .++..|+.+...... .
T Consensus 6 l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~-~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (255)
T 4eso_A 6 YQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFG---PRV-HALRSDIADLNEIAVLGAAAGQTL 80 (255)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG---GGE-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC---Ccc-eEEEccCCCHHHHHHHHHHHHHHh
Confidence 356788888877663 5666667777 89999999887776665542 245 778888876532110 1
Q ss_pred CceeEEEechhh------hccCHHHHH-----------HHHHHHhhhcCCCcEEEEEe
Q psy8370 149 IKYDVIWIQWVL------MFILDEDII-----------KFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~l------~~~~~~~~~-----------~~l~~~~~~LkpgG~l~i~~ 189 (256)
+.+|+++.+... ...+.+++. .+.+.+.+.++++|.++...
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 368999877432 222333332 24456666777788877753
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.78 Score=35.54 Aligned_cols=108 Identities=14% Similarity=0.040 Sum_probs=67.1
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCC-HHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQS-SKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-------- 147 (256)
-.++++|-.|++.|. ++..|++.|+ +|+.++.. +...+...+.+...+.++ .++.+|+.+......
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~~~ 106 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGGRA-VAIRADNRDAEAIEQAIRETVEA 106 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCE-EEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcE-EEEECCCCCHHHHHHHHHHHHHH
Confidence 356788888887663 5666777787 78887654 455555555555545566 778888876532110
Q ss_pred CCceeEEEechhh------hccCHHHHH-----------HHHHHHhhhcCCCcEEEEEe
Q psy8370 148 NIKYDVIWIQWVL------MFILDEDII-----------KFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l------~~~~~~~~~-----------~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+..|+++.+... ...+.+++. .+++.+.+.|+++|.++...
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 1368999987532 222333322 34566777888888887763
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.57 Score=36.80 Aligned_cols=107 Identities=13% Similarity=-0.019 Sum_probs=66.3
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCC--HHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQS--SKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-------- 147 (256)
.++++|-.|++.|. ++..|++.|+ +|+.++.+ +...+...+.....+.++ .++.+|+.+......
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~~~ 125 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKA-VLLPGDLSDESFARSLVHKAREA 125 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCE-EECCCCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcE-EEEEecCCCHHHHHHHHHHHHHH
Confidence 46788888877663 5566667777 89988886 344555555555545556 777888876432110
Q ss_pred CCceeEEEechhhh-------ccCHHHHH-----------HHHHHHhhhcCCCcEEEEEe
Q psy8370 148 NIKYDVIWIQWVLM-------FILDEDII-----------KFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~-------~~~~~~~~-----------~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+.+|+++.+.... ..+.+++. .+++.+.+.++++|.++...
T Consensus 126 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is 185 (294)
T 3r3s_A 126 LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS 185 (294)
T ss_dssp HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence 13689998775432 22333322 34566677788888888764
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.3 Score=38.55 Aligned_cols=78 Identities=10% Similarity=0.008 Sum_probs=55.9
Q ss_pred CCCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 80 PGKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 80 ~~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
-.+++||-.|++.| .++..|+++|+ +|++++.++..++.+.+.+...+.++ .++..|+.+...... .
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~~~~ 106 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGFDA-HGVVCDVRHLDEMVRLADEAFRLL 106 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCE-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCce-EEEEccCCCHHHHHHHHHHHHHhC
Confidence 35678998888766 35666667787 89999999988888777776655566 788889876532110 1
Q ss_pred CceeEEEechh
Q psy8370 149 IKYDVIWIQWV 159 (256)
Q Consensus 149 ~~~D~V~~~~~ 159 (256)
+.+|+++.+..
T Consensus 107 g~id~lvnnAg 117 (301)
T 3tjr_A 107 GGVDVVFSNAG 117 (301)
T ss_dssp SSCSEEEECCC
T ss_pred CCCCEEEECCC
Confidence 36899998754
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.21 Score=41.38 Aligned_cols=103 Identities=14% Similarity=-0.029 Sum_probs=59.6
Q ss_pred CCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc---cccccC-CCCCCCce
Q psy8370 78 SDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV---GIQDFK-PEDLNIKY 151 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~---d~~~~~-~~~~~~~~ 151 (256)
...++.+||-+|+|. |..+..+++. |+.+|+++|.++.-.+.+++.-. . .++.. |+.+.. ...+...+
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa----~--~vi~~~~~~~~~~i~~~t~g~g~ 283 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGA----D--HVIDPTKENFVEAVLDYTNGLGA 283 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC----S--EEECTTTSCHHHHHHHHTTTCCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC----C--EEEcCCCCCHHHHHHHHhCCCCC
Confidence 567889999999863 5666666654 55589999999988888765411 1 22211 111100 00011259
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|+|+-...-.. .....+++.+.+.++++|.+++..
T Consensus 284 D~vid~~g~~~---~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 284 KLFLEATGVPQ---LVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp SEEEECSSCHH---HHHHHHHHHHHHCSCCCCEEEECS
T ss_pred CEEEECCCCcH---HHHHHHHHHHHhccCCCcEEEEeC
Confidence 99986533110 012233333345559999999863
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.34 E-value=0.21 Score=41.02 Aligned_cols=100 Identities=14% Similarity=0.064 Sum_probs=61.8
Q ss_pred CC-CCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcc------ccc-cCCCC
Q psy8370 77 KS-DPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG------IQD-FKPED 146 (256)
Q Consensus 77 ~~-~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d------~~~-~~~~~ 146 (256)
.. ..++.+||-+|+| .|..+..++.. |..+|++++.+++-++.+++. +.. .++..+ +.+ .....
T Consensus 190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~~~~v~~~~ 263 (380)
T 1vj0_A 190 YPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD--LTLNRRETSVEERRKAIMDIT 263 (380)
T ss_dssp CSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS--EEEETTTSCHHHHHHHHHHHT
T ss_pred cCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc----CCc--EEEeccccCcchHHHHHHHHh
Confidence 45 6788999999965 46667776655 424899999999887777642 211 222211 111 00000
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
....+|+|+....- ...++.+.+.|+++|.+++...
T Consensus 264 ~g~g~Dvvid~~g~--------~~~~~~~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 264 HGRGADFILEATGD--------SRALLEGSELLRRGGFYSVAGV 299 (380)
T ss_dssp TTSCEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECCC
T ss_pred CCCCCcEEEECCCC--------HHHHHHHHHHHhcCCEEEEEec
Confidence 11259999876431 1356677889999999988643
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.31 E-value=0.38 Score=36.55 Aligned_cols=77 Identities=17% Similarity=0.126 Sum_probs=53.4
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
.++++|=.|++.| .++..|+++|+ +|++++.++...+...+.+...+.++ .++..|+.+..... ..+
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGFKA-RGLVLNISDIESIQNFFAEIKAENL 81 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCE-EEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCce-EEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3567887776655 35566666777 89999999988887777776655566 78888887643211 023
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 82 ~id~li~~Ag 91 (247)
T 3lyl_A 82 AIDILVNNAG 91 (247)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899998754
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=93.26 E-value=0.3 Score=39.45 Aligned_cols=99 Identities=19% Similarity=-0.003 Sum_probs=61.1
Q ss_pred cCCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc---CCC-CCCC
Q psy8370 76 KKSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF---KPE-DLNI 149 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~---~~~-~~~~ 149 (256)
.... ++.+||-+|+|. |..+..++.. |+.+|++++.+++-.+.+++. +.. ..+..+-.++ ... ....
T Consensus 163 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga~--~~~~~~~~~~~~~v~~~~~g~ 235 (348)
T 2d8a_A 163 AGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GAD--YVINPFEEDVVKEVMDITDGN 235 (348)
T ss_dssp TSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TCS--EEECTTTSCHHHHHHHHTTTS
T ss_pred hcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC--EEECCCCcCHHHHHHHHcCCC
Confidence 3456 889999999853 6666666654 444899999998877777643 111 1221111111 000 0112
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+|+|+..... ...++.+.+.|+++|.++...
T Consensus 236 g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 236 GVDVFLEFSGA--------PKALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp CEEEEEECSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred CCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEc
Confidence 59999876431 245677888999999998864
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.1 Score=42.16 Aligned_cols=97 Identities=21% Similarity=0.181 Sum_probs=60.8
Q ss_pred CCCCCCCeEEEEcCC--CCHhHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc----C-CCCC
Q psy8370 77 KSDPGKTRVLDVGAG--IGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF----K-PEDL 147 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G--~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~----~-~~~~ 147 (256)
....++.+||-+|+| .|..+..++.. |+ +|+++|.+++..+.+++. +.. ......-.+. . ...
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~~~~~~- 237 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA----GAD--YVINASMQDPLAEIRRITE- 237 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHTT-
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh----CCC--EEecCCCccHHHHHHHHhc-
Confidence 456788999999998 44555555544 55 899999999888777542 111 1221110111 0 011
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+.+|+|+....- ...++.+.+.|+++|.+++..
T Consensus 238 ~~~~d~vi~~~g~--------~~~~~~~~~~l~~~G~iv~~g 271 (347)
T 1jvb_A 238 SKGVDAVIDLNNS--------EKTLSVYPKALAKQGKYVMVG 271 (347)
T ss_dssp TSCEEEEEESCCC--------HHHHTTGGGGEEEEEEEEECC
T ss_pred CCCceEEEECCCC--------HHHHHHHHHHHhcCCEEEEEC
Confidence 0269999876431 135677889999999998854
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.054 Score=43.77 Aligned_cols=97 Identities=13% Similarity=0.065 Sum_probs=61.3
Q ss_pred cCCCCCCCeEEEEcC--CCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccc---c---CCCC
Q psy8370 76 KKSDPGKTRVLDVGA--GIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD---F---KPED 146 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~---~---~~~~ 146 (256)
.....++.+||-+|+ |.|..+..++.. |+ +|++++.+++.++.+++.+ +.. ..+ |..+ + ....
T Consensus 150 ~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~~---g~~--~~~--d~~~~~~~~~~~~~~ 221 (345)
T 2j3h_A 150 VCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTKF---GFD--DAF--NYKEESDLTAALKRC 221 (345)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTS---CCS--EEE--ETTSCSCSHHHHHHH
T ss_pred HhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---CCc--eEE--ecCCHHHHHHHHHHH
Confidence 346678899999997 466666666554 55 8999999988777665322 211 111 2211 1 0000
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
..+.+|+|+.+..- ..++.+.+.|+++|.+++..
T Consensus 222 ~~~~~d~vi~~~g~---------~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 222 FPNGIDIYFENVGG---------KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp CTTCEEEEEESSCH---------HHHHHHHTTEEEEEEEEECC
T ss_pred hCCCCcEEEECCCH---------HHHHHHHHHHhcCCEEEEEc
Confidence 01269999876431 25677889999999998864
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=93.11 E-value=0.26 Score=37.85 Aligned_cols=77 Identities=12% Similarity=0.119 Sum_probs=52.9
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|-.|++.| .++..|+++|+ +|+.++.+++..+.+.+.+...+.++ .++..|+.+...... .+
T Consensus 5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~~~~g 82 (257)
T 3imf_A 5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPGQI-LTVQMDVRNTDDIQKMIEQIDEKFG 82 (257)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTTCE-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcE-EEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4567887777665 25566667777 89999999988887777665544456 778888876532110 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+++.+..
T Consensus 83 ~id~lv~nAg 92 (257)
T 3imf_A 83 RIDILINNAA 92 (257)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899997754
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.55 Score=36.08 Aligned_cols=107 Identities=13% Similarity=0.061 Sum_probs=62.8
Q ss_pred CCCeEEEEcCCCC---HhHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
++++||=.|++.| .++..|++ .|+ +|++++.++...+...+.+...+.++ .++.+|+.+...... .
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSP-RFHQLDIDDLQSIRALRDFLRKEY 80 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCC-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCCee-EEEECCCCCHHHHHHHHHHHHHhc
Confidence 4567776665443 23444555 566 89999999877666666665544466 788888876432110 1
Q ss_pred CceeEEEechhhhcc-----C-HHH-----------HHHHHHHHhhhcCCCcEEEEEe
Q psy8370 149 IKYDVIWIQWVLMFI-----L-DED-----------IIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~-----~-~~~-----------~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+.+|+|+.+...... + .++ ...+++.+.+.++++|.++...
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s 138 (276)
T 1wma_A 81 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 138 (276)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence 268999876432211 1 122 1234556666676677777753
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.31 Score=39.21 Aligned_cols=100 Identities=13% Similarity=0.106 Sum_probs=60.5
Q ss_pred cCCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc---cccccCC-CCCCC
Q psy8370 76 KKSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV---GIQDFKP-EDLNI 149 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~---d~~~~~~-~~~~~ 149 (256)
.....++.+||-.|+|. |.++..++.. |+..++++|.+++-++.+++. +. . ..+.. +..+... ..+..
T Consensus 155 ~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l----Ga-~-~~i~~~~~~~~~~~~~~~~~~ 228 (346)
T 4a2c_A 155 LAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF----GA-M-QTFNSSEMSAPQMQSVLRELR 228 (346)
T ss_dssp HTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC-S-EEEETTTSCHHHHHHHHGGGC
T ss_pred HhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc----CC-e-EEEeCCCCCHHHHHHhhcccC
Confidence 44677889999999874 4455555544 565788999999887777653 21 1 22221 1111100 00012
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+|+|+.... ....++.+.+.|+++|.+++..
T Consensus 229 g~d~v~d~~G--------~~~~~~~~~~~l~~~G~~v~~g 260 (346)
T 4a2c_A 229 FNQLILETAG--------VPQTVELAVEIAGPHAQLALVG 260 (346)
T ss_dssp SSEEEEECSC--------SHHHHHHHHHHCCTTCEEEECC
T ss_pred Cccccccccc--------ccchhhhhhheecCCeEEEEEe
Confidence 5788876532 1246677888999999999864
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.098 Score=42.32 Aligned_cols=96 Identities=10% Similarity=0.032 Sum_probs=60.7
Q ss_pred CCCCCCCeEEEEcC--CCCHhHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccc---cc---CCCCC
Q psy8370 77 KSDPGKTRVLDVGA--GIGRISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ---DF---KPEDL 147 (256)
Q Consensus 77 ~~~~~~~~vLDiG~--G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~---~~---~~~~~ 147 (256)
....++.+||-+|+ |.|..+..++. .|. +|++++.+++..+.+++. +.. ... |.. ++ .....
T Consensus 165 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~----g~~--~~~--d~~~~~~~~~~~~~~~ 235 (347)
T 2hcy_A 165 ANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSI----GGE--VFI--DFTKEKDIVGAVLKAT 235 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHT----TCC--EEE--ETTTCSCHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHc----CCc--eEE--ecCccHhHHHHHHHHh
Confidence 35678899999998 45666666655 455 899999988777666542 211 122 222 11 00000
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+.+|+|+.+... ...++.+.+.|+++|.+++..
T Consensus 236 ~~~~D~vi~~~g~--------~~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 236 DGGAHGVINVSVS--------EAAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp TSCEEEEEECSSC--------HHHHHHHTTSEEEEEEEEECC
T ss_pred CCCCCEEEECCCc--------HHHHHHHHHHHhcCCEEEEEe
Confidence 1159999876431 246778889999999998764
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=0.98 Score=35.48 Aligned_cols=107 Identities=11% Similarity=0.025 Sum_probs=67.1
Q ss_pred CCCeEEEEcCCC--CH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------
Q psy8370 81 GKTRVLDVGAGI--GR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~--G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-------- 147 (256)
.++++|-.|++. |. ++..|++.|+ +|+.++.++...+.+.+.....+ .+ .++.+|+.+......
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~-~~~~~Dv~d~~~v~~~~~~~~~~ 105 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLG-VK-LTVPCDVSDAESVDNMFKVLAEE 105 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHT-CC-EEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC-Ce-EEEEcCCCCHHHHHHHHHHHHHH
Confidence 467888888754 42 6667777787 89999999766555555444333 45 678888876532110
Q ss_pred CCceeEEEechhhh----------ccCHHHHH-----------HHHHHHhhhcCCCcEEEEEec
Q psy8370 148 NIKYDVIWIQWVLM----------FILDEDII-----------KFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 148 ~~~~D~V~~~~~l~----------~~~~~~~~-----------~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+.+|+++.+.... ..+.+++. .+.+.+.+.++.+|.++....
T Consensus 106 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS 169 (296)
T 3k31_A 106 WGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY 169 (296)
T ss_dssp HSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred cCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence 13689999875432 23333322 345566777777888887643
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.76 E-value=0.47 Score=37.99 Aligned_cols=85 Identities=6% Similarity=0.055 Sum_probs=50.1
Q ss_pred eEEEccccccCCCCCCCceeEEEechhh--h------------ccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc
Q psy8370 133 KCYNVGIQDFKPEDLNIKYDVIWIQWVL--M------------FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE 198 (256)
Q Consensus 133 ~~~~~d~~~~~~~~~~~~~D~V~~~~~l--~------------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 198 (256)
.++++|..+.......+++|+|++.=-. . ++ ......+++++++|+|||.+++........
T Consensus 16 ~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~--~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~--- 90 (323)
T 1boo_A 16 SMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYV--DWFLSFAKVVNKKLKPDGSFVVDFGGAYMK--- 90 (323)
T ss_dssp EEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHH--HHHHHHHHHHHHHEEEEEEEEEEECCCEET---
T ss_pred eEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHH--HHHHHHHHHHHHHCcCCcEEEEEECCEecC---
Confidence 6788887653321112489999987111 1 11 245678899999999999999863211000
Q ss_pred ccCCCCcee--eCHHHHHHHHHhcCCcEEE
Q psy8370 199 YDDEDSSVV--RSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 199 ~~~~~~~~~--~~~~~~~~~l~~~gf~~~~ 226 (256)
...+. .....+.++++..||....
T Consensus 91 ----g~~~~~~~~~~~i~~~~~~~Gf~~~~ 116 (323)
T 1boo_A 91 ----GVPARSIYNFRVLIRMIDEVGFFLAE 116 (323)
T ss_dssp ----TEEEECCHHHHHHHHHHHTTCCEEEE
T ss_pred ----CCcccccchHHHHHHHHHhCCCEEEE
Confidence 00000 1234455677889998764
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=92.73 E-value=1.3 Score=33.96 Aligned_cols=75 Identities=16% Similarity=0.135 Sum_probs=49.9
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC---CCceeE
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL---NIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~---~~~~D~ 153 (256)
-+++++|--|++.|. .+..|++.|+ +|+.+|.+.. +.+.+.....+.+. ..+..|+.+...... .+.+|+
T Consensus 7 L~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~--~~~~~~~~~~g~~~-~~~~~Dv~d~~~v~~~~~~g~iDi 82 (247)
T 4hp8_A 7 LEGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP--DETLDIIAKDGGNA-SALLIDFADPLAAKDSFTDAGFDI 82 (247)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTTCCE-EEEECCTTSTTTTTTSSTTTCCCE
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH--HHHHHHHHHhCCcE-EEEEccCCCHHHHHHHHHhCCCCE
Confidence 356788878887774 6677777787 8999998753 23334445555556 778888876543211 357999
Q ss_pred EEech
Q psy8370 154 IWIQW 158 (256)
Q Consensus 154 V~~~~ 158 (256)
++.+.
T Consensus 83 LVNNA 87 (247)
T 4hp8_A 83 LVNNA 87 (247)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99874
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.64 E-value=0.52 Score=37.03 Aligned_cols=79 Identities=14% Similarity=0.083 Sum_probs=52.5
Q ss_pred CCCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEcccccc-CCCC--------
Q psy8370 80 PGKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDF-KPED-------- 146 (256)
Q Consensus 80 ~~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~-~~~~-------- 146 (256)
..+++||=.|++.| .++..|+++|+ +|++++.++...+.+.+.+...+ .++ .++..|+.+. ....
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~-~~~~~Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENV-VFHQLDVTDPIATMSSLADFIKT 87 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSE-EEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCce-EEEEccCCCcHHHHHHHHHHHHH
Confidence 34677887787665 25566666777 89999999887777666665443 356 7888898775 2100
Q ss_pred CCCceeEEEechhh
Q psy8370 147 LNIKYDVIWIQWVL 160 (256)
Q Consensus 147 ~~~~~D~V~~~~~l 160 (256)
..+.+|+++.+...
T Consensus 88 ~~g~iD~lv~nAg~ 101 (311)
T 3o26_A 88 HFGKLDILVNNAGV 101 (311)
T ss_dssp HHSSCCEEEECCCC
T ss_pred hCCCCCEEEECCcc
Confidence 01368999987653
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=0.57 Score=36.53 Aligned_cols=78 Identities=12% Similarity=0.092 Sum_probs=52.3
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCC----------------HHHHHHHHHHHHhcCCCcceEEEcccc
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQS----------------SKFIEQAKEEILKDCDKLDKCYNVGIQ 140 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s----------------~~~~~~a~~~~~~~~~~i~~~~~~d~~ 140 (256)
-.++++|-.|++.|. ++..|++.|+ +|+++|.+ ++.++...+.....+.++ .++..|+.
T Consensus 9 l~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~ 86 (286)
T 3uve_A 9 VEGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRI-VTAEVDVR 86 (286)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCE-EEEECCTT
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCce-EEEEcCCC
Confidence 356788888887763 5666777787 89999887 555665555555555566 77888887
Q ss_pred ccCCCCC--------CCceeEEEechh
Q psy8370 141 DFKPEDL--------NIKYDVIWIQWV 159 (256)
Q Consensus 141 ~~~~~~~--------~~~~D~V~~~~~ 159 (256)
+...... .+..|+++.+..
T Consensus 87 ~~~~v~~~~~~~~~~~g~id~lv~nAg 113 (286)
T 3uve_A 87 DYDALKAAVDSGVEQLGRLDIIVANAG 113 (286)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence 6532110 136899998754
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=92.61 E-value=1.2 Score=34.10 Aligned_cols=108 Identities=10% Similarity=0.061 Sum_probs=68.8
Q ss_pred CCCeEEEEcCCC--C---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCC-------
Q psy8370 81 GKTRVLDVGAGI--G---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDL------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~--G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~------- 147 (256)
+++++|--|++. | ..+..|++.|+ +|+.++.++...+.+.+.....+ .+. .++..|+.+......
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~~ 82 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEA-HLYQIDVQSDEEVINGFEQIGK 82 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSC-EEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcE-EEEEccCCCHHHHHHHHHHHHH
Confidence 578888888533 4 36677778888 89999999988888877776544 355 778888876432110
Q ss_pred -CCceeEEEechhh----------hccCHHHHHH-----------HHHHHhhhcCCCcEEEEEec
Q psy8370 148 -NIKYDVIWIQWVL----------MFILDEDIIK-----------FLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 148 -~~~~D~V~~~~~l----------~~~~~~~~~~-----------~l~~~~~~LkpgG~l~i~~~ 190 (256)
-+..|+++.+... .....+++.. ..+.....++.+|.++....
T Consensus 83 ~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS 147 (256)
T 4fs3_A 83 DVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTY 147 (256)
T ss_dssp HHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEEC
T ss_pred HhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEec
Confidence 2478999876432 1122222222 22344566788898887643
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=92.61 E-value=0.31 Score=39.21 Aligned_cols=95 Identities=11% Similarity=0.054 Sum_probs=60.0
Q ss_pred CCCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC----CCce
Q psy8370 78 SDPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL----NIKY 151 (256)
Q Consensus 78 ~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~----~~~~ 151 (256)
...++.+||-+|+| .|..+..++.. |. +|++++.++.-++.+++. +.. ..+ |..+...... .+.+
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~--~~~--d~~~~~~~~~~~~~~~~~ 231 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKEL----GAD--LVV--NPLKEDAAKFMKEKVGGV 231 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT----TCS--EEE--CTTTSCHHHHHHHHHSSE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHC----CCC--EEe--cCCCccHHHHHHHHhCCC
Confidence 46778999999985 46666666554 55 999999999888777542 211 111 2221100000 0259
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|+|+..... ...++.+.+.|+++|.+++..
T Consensus 232 d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g 261 (339)
T 1rjw_A 232 HAAVVTAVS--------KPAFQSAYNSIRRGGACVLVG 261 (339)
T ss_dssp EEEEESSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred CEEEECCCC--------HHHHHHHHHHhhcCCEEEEec
Confidence 999876431 135677888999999998753
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.72 Score=36.32 Aligned_cols=78 Identities=12% Similarity=0.107 Sum_probs=52.5
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCC------------HHHHHHHHHHHHhcCCCcceEEEccccccCC
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQS------------SKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 144 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s------------~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~ 144 (256)
-.++++|-.|++.|. ++..|++.|+ +|+++|.+ ++.++...+.+...+.++ .++..|+.+...
T Consensus 26 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~ 103 (299)
T 3t7c_A 26 VEGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRI-IASQVDVRDFDA 103 (299)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCE-EEEECCTTCHHH
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcCCce-EEEECCCCCHHH
Confidence 356788888887763 5666777787 89999987 555665555555555566 788889876532
Q ss_pred CCC--------CCceeEEEechh
Q psy8370 145 EDL--------NIKYDVIWIQWV 159 (256)
Q Consensus 145 ~~~--------~~~~D~V~~~~~ 159 (256)
... .+..|+++.+..
T Consensus 104 v~~~~~~~~~~~g~iD~lv~nAg 126 (299)
T 3t7c_A 104 MQAAVDDGVTQLGRLDIVLANAA 126 (299)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHhCCCCEEEECCC
Confidence 110 136899987754
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=92.50 E-value=1 Score=35.03 Aligned_cols=104 Identities=13% Similarity=0.055 Sum_probs=64.1
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|-.|++.|. ++..|++.|+ +|+.+|.++...+.+.+.+ +.++ .++..|+.+...... .+
T Consensus 28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~---~~~~-~~~~~Dv~d~~~v~~~~~~~~~~~g 102 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKI---GCGA-AACRVDVSDEQQIIAMVDACVAAFG 102 (277)
T ss_dssp TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---CSSC-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---CCcc-eEEEecCCCHHHHHHHHHHHHHHcC
Confidence 46788888877663 5666777787 8999999987766655544 3355 778888876532110 13
Q ss_pred ceeEEEechhhh------ccCHHHHHH-----------HHHHHhhhc--CCCcEEEEEe
Q psy8370 150 KYDVIWIQWVLM------FILDEDIIK-----------FLNLCKQIL--NKNGIIIIKD 189 (256)
Q Consensus 150 ~~D~V~~~~~l~------~~~~~~~~~-----------~l~~~~~~L--kpgG~l~i~~ 189 (256)
..|+++.+.... ..+.+++.+ +.+.+.+.+ +.+|.++...
T Consensus 103 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~is 161 (277)
T 3gvc_A 103 GVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLS 161 (277)
T ss_dssp SCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 689999875432 223333332 244445544 4567777653
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.19 Score=40.97 Aligned_cols=98 Identities=15% Similarity=0.082 Sum_probs=61.9
Q ss_pred CCCCCCCeEEEEc--CCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc---CCCCCCCc
Q psy8370 77 KSDPGKTRVLDVG--AGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF---KPEDLNIK 150 (256)
Q Consensus 77 ~~~~~~~~vLDiG--~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~---~~~~~~~~ 150 (256)
....++.+||-+| +|.|..+..++.. |+ +|++++.+++-.+.+++. +.. ..+..+-.++ ......+.
T Consensus 159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~----Ga~--~~~~~~~~~~~~~~~~~~~~g 231 (362)
T 2c0c_A 159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSL----GCD--RPINYKTEPVGTVLKQEYPEG 231 (362)
T ss_dssp TCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT----TCS--EEEETTTSCHHHHHHHHCTTC
T ss_pred cCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHc----CCc--EEEecCChhHHHHHHHhcCCC
Confidence 3567889999999 4577777777654 55 899999998877777652 211 2222111111 00000125
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
+|+|+....- ..++.+.+.|+++|.+++...
T Consensus 232 ~D~vid~~g~---------~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 232 VDVVYESVGG---------AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp EEEEEECSCT---------HHHHHHHHHEEEEEEEEECCC
T ss_pred CCEEEECCCH---------HHHHHHHHHHhcCCEEEEEeC
Confidence 9999876431 356778889999999988643
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=92.47 E-value=0.93 Score=36.09 Aligned_cols=77 Identities=9% Similarity=0.089 Sum_probs=53.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEccccccCCCCC--------
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~i~~~~~~d~~~~~~~~~-------- 147 (256)
.+++||-.|++.|. ++..|+++|+ +|++++.++...+.+.+.+...+. ++ .++..|+.+......
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~-~~~~~Dl~~~~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEV-MGVQLDVASREGFKMAADEVEAR 84 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGE-EEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeE-EEEECCCCCHHHHHHHHHHHHHh
Confidence 46788988887763 6666777787 899999999888777776654432 55 778888876432110
Q ss_pred CCceeEEEechh
Q psy8370 148 NIKYDVIWIQWV 159 (256)
Q Consensus 148 ~~~~D~V~~~~~ 159 (256)
.+.+|+++.+..
T Consensus 85 ~g~id~lv~nAg 96 (319)
T 3ioy_A 85 FGPVSILCNNAG 96 (319)
T ss_dssp TCCEEEEEECCC
T ss_pred CCCCCEEEECCC
Confidence 136899998754
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.44 Score=37.15 Aligned_cols=77 Identities=8% Similarity=0.021 Sum_probs=53.2
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|-.|++.|. ++..|++.|+ +|++++.++..++...+.+...+.++ .++..|+.+...... .+
T Consensus 23 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (279)
T 3sju_A 23 RPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAGHDV-DGSSCDVTSTDEVHAAVAAAVERFG 100 (279)
T ss_dssp --CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCE-EEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcE-EEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46788888877663 5666667777 89999999988877777776555566 788888876532110 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+++.+..
T Consensus 101 ~id~lv~nAg 110 (279)
T 3sju_A 101 PIGILVNSAG 110 (279)
T ss_dssp SCCEEEECCC
T ss_pred CCcEEEECCC
Confidence 6899998754
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=92.37 E-value=0.11 Score=41.68 Aligned_cols=99 Identities=13% Similarity=-0.012 Sum_probs=62.1
Q ss_pred cCCCCCCCeEEEEcC--CCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC---C-CCCC
Q psy8370 76 KKSDPGKTRVLDVGA--GIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK---P-EDLN 148 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~---~-~~~~ 148 (256)
.....++.+||-+|+ |.|..+..++.. |+ +|++++.+++-++.+++. +.. ..+..+-.++. . ....
T Consensus 135 ~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----Ga~--~~~~~~~~~~~~~~~~~~~~ 207 (325)
T 3jyn_A 135 TYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKAL----GAW--ETIDYSHEDVAKRVLELTDG 207 (325)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHTTT
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCC--EEEeCCCccHHHHHHHHhCC
Confidence 346778899999983 456777766654 55 899999999888877653 111 22221111110 0 0011
Q ss_pred CceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 149 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
..+|+|+.+..- ..++.+.+.|+++|.+++...
T Consensus 208 ~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 208 KKCPVVYDGVGQ---------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp CCEEEEEESSCG---------GGHHHHHTTEEEEEEEEECCC
T ss_pred CCceEEEECCCh---------HHHHHHHHHhcCCCEEEEEec
Confidence 269999976442 245567889999999998643
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.34 E-value=0.63 Score=37.63 Aligned_cols=98 Identities=15% Similarity=0.071 Sum_probs=59.9
Q ss_pred cCCCCCCCeEEEEcC--CCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC----CCCCC
Q psy8370 76 KKSDPGKTRVLDVGA--GIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK----PEDLN 148 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~----~~~~~ 148 (256)
.....++.+||-.|+ |.|..+..++.. |+ +|++++.+++-.+.+++. +.. .....+-.+.. .....
T Consensus 165 ~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----ga~--~~~d~~~~~~~~~~~~~~~~ 237 (351)
T 1yb5_A 165 SACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQN----GAH--EVFNHREVNYIDKIKKYVGE 237 (351)
T ss_dssp TSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT----TCS--EEEETTSTTHHHHHHHHHCT
T ss_pred hhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHc----CCC--EEEeCCCchHHHHHHHHcCC
Confidence 346678899999997 456666665554 55 899999998877765432 211 12211111110 00011
Q ss_pred CceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 149 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
..+|+|+.+..- ..+..+.+.|+++|.+++..
T Consensus 238 ~~~D~vi~~~G~---------~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 238 KGIDIIIEMLAN---------VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp TCEEEEEESCHH---------HHHHHHHHHEEEEEEEEECC
T ss_pred CCcEEEEECCCh---------HHHHHHHHhccCCCEEEEEe
Confidence 269999877441 24566788999999998864
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.21 Score=40.04 Aligned_cols=97 Identities=16% Similarity=0.082 Sum_probs=60.9
Q ss_pred CCCCCCCeEEEEcC--CCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC----CCCCC
Q psy8370 77 KSDPGKTRVLDVGA--GIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----EDLNI 149 (256)
Q Consensus 77 ~~~~~~~~vLDiG~--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~----~~~~~ 149 (256)
....++.+||-+|+ |.|..+..++.. |+ +|++++.+++-++.+++. +.. ..+..+-.++.. .....
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----ga~--~~~~~~~~~~~~~~~~~~~~~ 216 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKEY----GAE--YLINASKEDILRQVLKFTNGK 216 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT----TCS--EEEETTTSCHHHHHHHHTTTS
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCc--EEEeCCCchHHHHHHHHhCCC
Confidence 46778899999994 456666666654 55 899999998877766552 211 222211111100 00112
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+|+|+.+..- ..++.+.+.|+++|.+++..
T Consensus 217 g~D~vid~~g~---------~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 217 GVDASFDSVGK---------DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp CEEEEEECCGG---------GGHHHHHHHEEEEEEEEECC
T ss_pred CceEEEECCCh---------HHHHHHHHHhccCCEEEEEc
Confidence 59999976542 24566778999999999864
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.9 Score=35.34 Aligned_cols=107 Identities=17% Similarity=0.101 Sum_probs=61.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHH-HHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSK-FIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~-~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
.++++|-.|++.|. ++..|++.|+ +|++++.++. ..+.+.+.+...+.++ .++..|+.+...... .
T Consensus 28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~ 105 (283)
T 1g0o_A 28 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDA-ACVKANVGVVEDIVRMFEEAVKIF 105 (283)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCE-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhCCCe-EEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35678877766552 4555556677 8999888754 3344444444444456 677888765431100 1
Q ss_pred CceeEEEechhhh------ccCHHHHH-----------HHHHHHhhhcCCCcEEEEEe
Q psy8370 149 IKYDVIWIQWVLM------FILDEDII-----------KFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~l~------~~~~~~~~-----------~~l~~~~~~LkpgG~l~i~~ 189 (256)
+.+|+++.+.... ..+.+++. .+++.+.+.|+.+|.++...
T Consensus 106 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 163 (283)
T 1g0o_A 106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 163 (283)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3689999875432 12333322 24456677777778887764
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=0.69 Score=36.80 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=57.1
Q ss_pred eEEEEcC--CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE-ccccccCCCCCCCceeEEEechhh
Q psy8370 84 RVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN-VGIQDFKPEDLNIKYDVIWIQWVL 160 (256)
Q Consensus 84 ~vLDiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~-~d~~~~~~~~~~~~~D~V~~~~~l 160 (256)
+||-+|+ |.|..+..+++....+|++++.+++-.+.+++. +.. ..+. .+........ .+.+|+|+-...
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~~~-~~~~d~v~d~~g- 220 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSL----GAN--RILSRDEFAESRPLE-KQLWAGAIDTVG- 220 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TCS--EEEEGGGSSCCCSSC-CCCEEEEEESSC-
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCC--EEEecCCHHHHHhhc-CCCccEEEECCC-
Confidence 4998986 467777777765333899999999888888653 211 2221 1111111111 136999876532
Q ss_pred hccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 161 MFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
. ..++.+.+.|+++|.+++..
T Consensus 221 -----~---~~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 221 -----D---KVLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp -----H---HHHHHHHHTEEEEEEEEECC
T ss_pred -----c---HHHHHHHHHHhcCCEEEEEe
Confidence 1 26778889999999999863
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=92.14 E-value=0.43 Score=37.06 Aligned_cols=77 Identities=13% Similarity=0.060 Sum_probs=53.1
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|-.|++.|. ++..|++.|+ +|+.++.++...+...+.+...+.++ .++..|+.+...... .+
T Consensus 25 ~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~~~~g 102 (271)
T 4ibo_A 25 GGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGHDA-EAVAFDVTSESEIIEAFARLDEQGI 102 (271)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCE-EECCCCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCce-EEEEcCCCCHHHHHHHHHHHHHHCC
Confidence 46778877776652 5566666777 89999999888777777766655566 777888876532110 23
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+++.+..
T Consensus 103 ~iD~lv~nAg 112 (271)
T 4ibo_A 103 DVDILVNNAG 112 (271)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899998754
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=92.12 E-value=0.076 Score=43.25 Aligned_cols=98 Identities=15% Similarity=0.074 Sum_probs=60.1
Q ss_pred CCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccc-ccCC-CCCCCcee
Q psy8370 77 KSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ-DFKP-EDLNIKYD 152 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~-~~~~-~~~~~~~D 152 (256)
....++.+||-+|+|. |..+..+++. |+ +|++++.++.-++.+++. +.. .++...-. ++.. ... .+|
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~--~v~~~~~~~~~~~~~~~--~~D 245 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----GAD--HYIATLEEGDWGEKYFD--TFD 245 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS--EEEEGGGTSCHHHHSCS--CEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHc----CCC--EEEcCcCchHHHHHhhc--CCC
Confidence 4567889999999853 6666666654 55 799999998878877652 111 22221111 1100 012 699
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+....-.. ...++.+.+.|+++|.++...
T Consensus 246 ~vid~~g~~~------~~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 246 LIVVCASSLT------DIDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp EEEECCSCST------TCCTTTGGGGEEEEEEEEECC
T ss_pred EEEECCCCCc------HHHHHHHHHHhcCCCEEEEec
Confidence 9987643200 013445678999999998764
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=92.10 E-value=2.2 Score=40.86 Aligned_cols=152 Identities=11% Similarity=0.015 Sum_probs=88.2
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc------------CCC--
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF------------KPE-- 145 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~------------~~~-- 145 (256)
...+++|+-||.|.++.-+...|+ ..+.++|+++.+.+.-+.++.. . .++..|+.++ ...
T Consensus 850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p~----~-~~~~~DI~~l~~~~~~gdi~~~~~~~l 924 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPG----T-TVFTEDCNVLLKLVMAGEVTNSLGQRL 924 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCTT----S-EEECSCHHHHHHHHTTTCSBCSSCCBC
T ss_pred CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCCC----C-cEeeccHHHHhHhhhccchhhhhhhhc
Confidence 456899999999999999988886 4688999999988877766432 2 3444444321 000
Q ss_pred CCCCceeEEEechhhhccC------H----HHHHHH---HHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHH
Q psy8370 146 DLNIKYDVIWIQWVLMFIL------D----EDIIKF---LNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQ 212 (256)
Q Consensus 146 ~~~~~~D~V~~~~~l~~~~------~----~~~~~~---l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (256)
...+.+|+|+...-.+.++ . +....+ +-++.+.++|. +++.++....... ..+ .....
T Consensus 925 p~~~~vDvl~GGpPCQ~FS~agr~~~~~~~d~R~~L~~~~lriv~~~rPk--~fv~ENV~glls~----~~g---~~~~~ 995 (1330)
T 3av4_A 925 PQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPR--FFLLENVRNFVSY----RRS---MVLKL 995 (1330)
T ss_dssp CCTTTCSEEEECCCCTTTCSSSCCCHHHHHHHHHSHHHHHHHHHHHHCCS--EEEEEEEGGGGTT----TTT---HHHHH
T ss_pred cccCccceEEecCCCcccccccccccccccchhhHHHHHHHHHHHHhcCc--EEEEeccHHHhcc----Ccc---HHHHH
Confidence 0013689998652211110 0 111112 22344456784 5555555443211 111 23467
Q ss_pred HHHHHHhcCCcEEEeee---ecCCCCcceeeeEEEec
Q psy8370 213 FCLLFSKANLKCVKSEK---VTGMPKSLFKIYMFALK 246 (256)
Q Consensus 213 ~~~~l~~~gf~~~~~~~---~~~~~~~~~~~~~~~l~ 246 (256)
+...|...||.+..... .++.|..--.+++.+.+
T Consensus 996 il~~L~~lGY~v~~~vLnA~dyGVPQ~R~Rvfivg~r 1032 (1330)
T 3av4_A 996 TLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAA 1032 (1330)
T ss_dssp HHHHHHHHTCEEEEEEEEGGGGSCSBCCEEEEEEEEC
T ss_pred HHHHHHhcCCeeeEEEecHHHcCCCccccEEEEEEec
Confidence 77888899998764332 35567666667766654
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.07 E-value=0.52 Score=36.84 Aligned_cols=78 Identities=17% Similarity=0.131 Sum_probs=53.8
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|-.|++.|. ++..|++.|+ +|+.++.++..++...+.+...+.++ .++..|+.+...... .+
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (283)
T 3v8b_A 27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQA-IALEADVSDELQMRNAVRDLVLKFG 104 (283)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTCCE-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcE-EEEEccCCCHHHHHHHHHHHHHHhC
Confidence 46788888877663 5566667777 89999999888777777665555556 778888876532110 13
Q ss_pred ceeEEEechhh
Q psy8370 150 KYDVIWIQWVL 160 (256)
Q Consensus 150 ~~D~V~~~~~l 160 (256)
.+|+++.+...
T Consensus 105 ~iD~lVnnAg~ 115 (283)
T 3v8b_A 105 HLDIVVANAGI 115 (283)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 68999987543
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=1.1 Score=34.32 Aligned_cols=77 Identities=10% Similarity=-0.013 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C-
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N- 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~- 148 (256)
.++++|-.|++.| .++..|++.|+ +|++++.++...+...+.+...+.++ .++.+|+.+...... .
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKV-EASVCDLSSRSERQELMNTVANHFH 85 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEE-EEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcE-EEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4577887777655 24555666677 89999999877766655555444455 778888876431100 1
Q ss_pred CceeEEEechh
Q psy8370 149 IKYDVIWIQWV 159 (256)
Q Consensus 149 ~~~D~V~~~~~ 159 (256)
+.+|+++.+..
T Consensus 86 g~id~lv~~Ag 96 (260)
T 2ae2_A 86 GKLNILVNNAG 96 (260)
T ss_dssp TCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 36899998754
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.04 E-value=2 Score=30.88 Aligned_cols=94 Identities=15% Similarity=-0.022 Sum_probs=52.9
Q ss_pred CCeEEEEcCCC-CH-hHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC--CC-CCCceeEEE
Q psy8370 82 KTRVLDVGAGI-GR-ISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP--ED-LNIKYDVIW 155 (256)
Q Consensus 82 ~~~vLDiG~G~-G~-~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~--~~-~~~~~D~V~ 155 (256)
+.+|+=+|+|. |. ++..|... |. +|+++|.+++..+.+++ . .+ ..+.+|..+... .. +...+|+|+
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~----~--g~-~~~~gd~~~~~~l~~~~~~~~ad~vi 110 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRS----E--GR-NVISGDATDPDFWERILDTGHVKLVL 110 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHH----T--TC-CEEECCTTCHHHHHTBCSCCCCCEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHH----C--CC-CEEEcCCCCHHHHHhccCCCCCCEEE
Confidence 56899898763 32 33444455 66 89999999987665543 1 23 556666543211 11 112589888
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
...- +......+-...+.+.|++.++..
T Consensus 111 ~~~~-----~~~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 111 LAMP-----HHQGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp ECCS-----SHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EeCC-----ChHHHHHHHHHHHHHCCCCEEEEE
Confidence 7422 122222333355566777777764
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=92.01 E-value=1.7 Score=34.57 Aligned_cols=90 Identities=19% Similarity=0.169 Sum_probs=56.7
Q ss_pred CCeEEEEcCCC--CHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccc-cCCCCCCCceeEEEec
Q psy8370 82 KTRVLDVGAGI--GRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD-FKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 82 ~~~vLDiG~G~--G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~-~~~~~~~~~~D~V~~~ 157 (256)
..+|.=||+|. +.++..+...|+. +|+++|.+++.++.+.+. + -+ .-...+..+ .. . ..|+|+..
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~----G-~~-~~~~~~~~~~~~---~--~aDvVila 101 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----G-II-DEGTTSIAKVED---F--SPDFVMLS 101 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----T-SC-SEEESCTTGGGG---G--CCSEEEEC
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC----C-Cc-chhcCCHHHHhh---c--cCCEEEEe
Confidence 36899999873 3455556566654 899999999877766532 2 11 122334333 21 2 47999876
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
. +......+++++...++|+..++-
T Consensus 102 v-----p~~~~~~vl~~l~~~l~~~~iv~d 126 (314)
T 3ggo_A 102 S-----PVRTFREIAKKLSYILSEDATVTD 126 (314)
T ss_dssp S-----CGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred C-----CHHHHHHHHHHHhhccCCCcEEEE
Confidence 3 333345678888888998876654
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=91.99 E-value=0.079 Score=42.81 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=62.1
Q ss_pred ccCCCCCCCeEEEEcC--CCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC---C-CCC
Q psy8370 75 QKKSDPGKTRVLDVGA--GIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK---P-EDL 147 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~---~-~~~ 147 (256)
+.....++.+||-+|+ |.|..+..++.. |+ +|++++.+++-.+.+++. +.. ..+..+ .++. . ...
T Consensus 153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----ga~--~v~~~~-~~~~~~v~~~~~ 224 (342)
T 4eye_A 153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSV----GAD--IVLPLE-EGWAKAVREATG 224 (342)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TCS--EEEESS-TTHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCc--EEecCc-hhHHHHHHHHhC
Confidence 3456778899999997 456777776655 55 999999998877777663 111 222222 1111 0 011
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
...+|+|+....- ..++.+.+.|+++|.+++..
T Consensus 225 ~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 225 GAGVDMVVDPIGG---------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp TSCEEEEEESCC-----------CHHHHHHTEEEEEEEEEC-
T ss_pred CCCceEEEECCch---------hHHHHHHHhhcCCCEEEEEE
Confidence 1259999976442 14566788999999999864
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=91.92 E-value=0.11 Score=41.89 Aligned_cols=98 Identities=13% Similarity=0.009 Sum_probs=59.8
Q ss_pred cCCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc---cccccCCCCCCCc
Q psy8370 76 KKSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV---GIQDFKPEDLNIK 150 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~---d~~~~~~~~~~~~ 150 (256)
.... ++.+||-+|+|. |..+..++.. |+.+|++++.+++-++.+++. .. ..+.. ++.+.........
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~------~v~~~~~~~~~~~~~~~~~~g 231 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-AD------RLVNPLEEDLLEVVRRVTGSG 231 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CS------EEECTTTSCHHHHHHHHHSSC
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HH------hccCcCccCHHHHHHHhcCCC
Confidence 4456 889999999853 6666666654 444899999998776666543 11 11111 1111000000125
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+|+....- ...++.+.+.|+++|.+++..
T Consensus 232 ~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~g 262 (343)
T 2dq4_A 232 VEVLLEFSGN--------EAAIHQGLMALIPGGEARILG 262 (343)
T ss_dssp EEEEEECSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred CCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence 9999876431 135677888999999988763
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=91.91 E-value=0.62 Score=36.25 Aligned_cols=77 Identities=12% Similarity=0.054 Sum_probs=52.7
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC---CcceEEEccccccCCCCC-------
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD---KLDKCYNVGIQDFKPEDL------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~i~~~~~~d~~~~~~~~~------- 147 (256)
.++++|-.|++.| .++..|++.|+ +|+.++.++...+.+.+.+...+. ++ .++.+|+.+......
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~~ 87 (281)
T 3svt_A 10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAI-RYEPTDITNEDETARAVDAVTA 87 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEE-EEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceE-EEEeCCCCCHHHHHHHHHHHHH
Confidence 4678888887666 35666667777 899999999887777766665432 45 778888876532110
Q ss_pred -CCceeEEEechh
Q psy8370 148 -NIKYDVIWIQWV 159 (256)
Q Consensus 148 -~~~~D~V~~~~~ 159 (256)
.+..|+++.+..
T Consensus 88 ~~g~id~lv~nAg 100 (281)
T 3svt_A 88 WHGRLHGVVHCAG 100 (281)
T ss_dssp HHSCCCEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 136899997754
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.91 E-value=0.93 Score=36.43 Aligned_cols=95 Identities=12% Similarity=-0.026 Sum_probs=61.4
Q ss_pred CCCCCCCeEEEEcC--CCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC------CCCC
Q psy8370 77 KSDPGKTRVLDVGA--GIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK------PEDL 147 (256)
Q Consensus 77 ~~~~~~~~vLDiG~--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~------~~~~ 147 (256)
....++.+||-+|+ |.|..+..++.. |+ +|++++.+++.++.+++. +.. ..+ |..+.. ....
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~----ga~--~~~--d~~~~~~~~~~~~~~~ 232 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKAL----GAD--ETV--NYTHPDWPKEVRRLTG 232 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCS--EEE--ETTSTTHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhc----CCC--EEE--cCCcccHHHHHHHHhC
Confidence 35678899999998 567777776654 55 899999999888877642 111 122 221110 0001
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
...+|+|+.... . ..++.+.+.|+++|.+++..
T Consensus 233 ~~~~d~vi~~~g-~--------~~~~~~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 233 GKGADKVVDHTG-A--------LYFEGVIKATANGGRIAIAG 265 (343)
T ss_dssp TTCEEEEEESSC-S--------SSHHHHHHHEEEEEEEEESS
T ss_pred CCCceEEEECCC-H--------HHHHHHHHhhccCCEEEEEe
Confidence 126999998754 1 24566778899999998764
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=91.80 E-value=0.51 Score=36.37 Aligned_cols=106 Identities=14% Similarity=0.095 Sum_probs=62.1
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCH---HHHHHHHHHHHhcCCCcceEEEccccccCCCCC-------
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSS---KFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~---~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~------- 147 (256)
.++++|-.|++.|. ++..|++.|+ +|+.++.+. +.++...+.+...+.++ .++..|+.+......
T Consensus 10 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~~ 87 (262)
T 3ksu_A 10 KNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQGAKV-ALYQSDLSNEEEVAKLFDFAEK 87 (262)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTTCEE-EEEECCCCSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcCCcE-EEEECCCCCHHHHHHHHHHHHH
Confidence 46788888876663 4455555566 788887653 34444444444444456 778888876532110
Q ss_pred -CCceeEEEechhh------hccCHHHHH-----------HHHHHHhhhcCCCcEEEEE
Q psy8370 148 -NIKYDVIWIQWVL------MFILDEDII-----------KFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 148 -~~~~D~V~~~~~l------~~~~~~~~~-----------~~l~~~~~~LkpgG~l~i~ 188 (256)
.+..|+++.+... ...+.+++. .+.+.+.+.|+++|.++..
T Consensus 88 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 146 (262)
T 3ksu_A 88 EFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITI 146 (262)
T ss_dssp HHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEE
Confidence 1368999987542 223333332 2444556666677887775
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.76 E-value=0.78 Score=35.75 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=68.4
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
-+++++|--|++.|. .+..|++.|+ +|+.+|.+++.++.+.+.+ +.+. ..+.+|+.+...... -
T Consensus 27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~---g~~~-~~~~~Dv~~~~~v~~~~~~~~~~~ 101 (273)
T 4fgs_A 27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI---GGGA-VGIQADSANLAELDRLYEKVKAEA 101 (273)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTC-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---CCCe-EEEEecCCCHHHHHHHHHHHHHHc
Confidence 457788888888774 6677777888 8999999998777665544 3345 677888766532111 2
Q ss_pred CceeEEEechh------hhccCHHHHH-----------HHHHHHhhhcCCCcEEEEE
Q psy8370 149 IKYDVIWIQWV------LMFILDEDII-----------KFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 149 ~~~D~V~~~~~------l~~~~~~~~~-----------~~l~~~~~~LkpgG~l~i~ 188 (256)
++.|+++.+.. +..++.+++. .+.+.+.+.|+.+|.++..
T Consensus 102 G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IIni 158 (273)
T 4fgs_A 102 GRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLT 158 (273)
T ss_dssp SCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred CCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 57999987743 2333434433 3345566777778877765
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=91.59 E-value=0.4 Score=38.85 Aligned_cols=90 Identities=16% Similarity=0.166 Sum_probs=56.2
Q ss_pred CeEEEEcCC-CCHhH-HHHH-Hh-cCCeEEEEeCCHH---HHHHHHHHHHhcCCCcceEEEccccccCC----CCCCCce
Q psy8370 83 TRVLDVGAG-IGRIS-KYLL-AK-HFDKIDLLEQSSK---FIEQAKEEILKDCDKLDKCYNVGIQDFKP----EDLNIKY 151 (256)
Q Consensus 83 ~~vLDiG~G-~G~~~-~~l~-~~-~~~~v~~vD~s~~---~~~~a~~~~~~~~~~i~~~~~~d~~~~~~----~~~~~~~ 151 (256)
.+||-+|+| .|.++ ..++ +. |+.+|++++.+++ -.+.+++. + . ... |..+... ... +.+
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~l----G--a-~~v--~~~~~~~~~i~~~~-gg~ 243 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEEL----D--A-TYV--DSRQTPVEDVPDVY-EQM 243 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHT----T--C-EEE--ETTTSCGGGHHHHS-CCE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHc----C--C-ccc--CCCccCHHHHHHhC-CCC
Confidence 899999985 36667 7776 43 5535999999887 67776542 2 1 111 2221100 001 259
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
|+|+-...- ...++.+.+.|+++|.+++...
T Consensus 244 Dvvid~~g~--------~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 244 DFIYEATGF--------PKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp EEEEECSCC--------HHHHHHHHHHEEEEEEEEECCC
T ss_pred CEEEECCCC--------hHHHHHHHHHHhcCCEEEEEeC
Confidence 999865321 1356778899999999988643
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=91.51 E-value=0.22 Score=40.25 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=57.3
Q ss_pred CCCeEEEEc-CC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc--cccccCCCCCCCceeEEE
Q psy8370 81 GKTRVLDVG-AG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV--GIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 81 ~~~~vLDiG-~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~--d~~~~~~~~~~~~~D~V~ 155 (256)
++.+||-+| +| .|..+..++.. |+ +|++++.+++-++.+++. +.. ..+.. ++.+.......+.+|+|+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~~~~~~~g~Dvv~ 222 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKM----GAD--IVLNHKESLLNQFKTQGIELVDYVF 222 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHH----TCS--EEECTTSCHHHHHHHHTCCCEEEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCc--EEEECCccHHHHHHHhCCCCccEEE
Confidence 788999884 43 46666666654 55 999999999888877763 111 11111 111100000113699999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.... -...++.+.+.|+++|.++..
T Consensus 223 d~~g--------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 223 CTFN--------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp ESSC--------HHHHHHHHHHHEEEEEEEEES
T ss_pred ECCC--------chHHHHHHHHHhccCCEEEEE
Confidence 7532 124567788999999999764
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=91.50 E-value=0.54 Score=36.56 Aligned_cols=77 Identities=12% Similarity=0.041 Sum_probs=52.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC-------CCc
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-------NIK 150 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-------~~~ 150 (256)
.++++|-.|++.|. ++..|++.|+ +|+.++.+++..+.+.+.+...+.++ .++..|+.+...... .+.
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~~~~~~~~~~~~g~ 109 (275)
T 4imr_A 32 RGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGGTA-QELAGDLSEAGAGTDLIERAEAIAP 109 (275)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTCCE-EEEECCTTSTTHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeE-EEEEecCCCHHHHHHHHHHHHHhCC
Confidence 46788878876653 5566667777 89999999877777666666555566 788888876532110 136
Q ss_pred eeEEEechh
Q psy8370 151 YDVIWIQWV 159 (256)
Q Consensus 151 ~D~V~~~~~ 159 (256)
+|+++.+..
T Consensus 110 iD~lvnnAg 118 (275)
T 4imr_A 110 VDILVINAS 118 (275)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 899998754
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.47 E-value=0.98 Score=35.90 Aligned_cols=96 Identities=16% Similarity=0.067 Sum_probs=57.4
Q ss_pred ccCCCCCCCeEEEEc-C-CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccc-cCCCCCCCce
Q psy8370 75 QKKSDPGKTRVLDVG-A-GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD-FKPEDLNIKY 151 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG-~-G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~-~~~~~~~~~~ 151 (256)
+.....++.+||-+| + |.|..+..+++....+|++++ ++.-.+.+++. +.. ..+..+-.+ +..... .+
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~l----Ga~--~~i~~~~~~~~~~~~~--g~ 216 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKAL----GAE--QCINYHEEDFLLAIST--PV 216 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHH----TCS--EEEETTTSCHHHHCCS--CE
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHc----CCC--EEEeCCCcchhhhhcc--CC
Confidence 345678899999986 4 357777777665333899887 44445555442 211 222221111 111112 69
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+|+-... . ..++.+.+.|+++|.++..
T Consensus 217 D~v~d~~g------~---~~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 217 DAVIDLVG------G---DVGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp EEEEESSC------H---HHHHHHGGGEEEEEEEEEC
T ss_pred CEEEECCC------c---HHHHHHHHhccCCCEEEEe
Confidence 99987533 1 1236788999999999986
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.39 E-value=0.79 Score=35.22 Aligned_cols=77 Identities=17% Similarity=0.103 Sum_probs=50.8
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|-.|++.|. ++..|++.|+ +|+.++.++...+...+.+...+.++ .++.+|+.+...... .+
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g 83 (262)
T 1zem_A 6 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEA-RSYVCDVTSEEAVIGTVDSVVRDFG 83 (262)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCE-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcE-EEEEecCCCHHHHHHHHHHHHHHhC
Confidence 45778888876653 5556666777 89999999877776666555444455 778888876431100 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 84 ~id~lv~nAg 93 (262)
T 1zem_A 84 KIDFLFNNAG 93 (262)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899998753
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.24 E-value=0.81 Score=35.55 Aligned_cols=78 Identities=14% Similarity=0.004 Sum_probs=52.8
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeC-------------CHHHHHHHHHHHHhcCCCcceEEEccccccC
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQ-------------SSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 143 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~-------------s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~ 143 (256)
-.++++|-.|++.|. ++..|++.|+ +|+++|. +++.++...+.....+.++ .++..|+.+..
T Consensus 13 l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~ 90 (280)
T 3pgx_A 13 LQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKA-LTRVLDVRDDA 90 (280)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCE-EEEECCTTCHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeE-EEEEcCCCCHH
Confidence 456788888887763 5666777787 8999987 6666666666666555566 77888887653
Q ss_pred CCCC--------CCceeEEEechh
Q psy8370 144 PEDL--------NIKYDVIWIQWV 159 (256)
Q Consensus 144 ~~~~--------~~~~D~V~~~~~ 159 (256)
.... .+..|+++.+..
T Consensus 91 ~v~~~~~~~~~~~g~id~lvnnAg 114 (280)
T 3pgx_A 91 ALRELVADGMEQFGRLDVVVANAG 114 (280)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 2110 136899998754
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.22 E-value=0.14 Score=41.01 Aligned_cols=98 Identities=14% Similarity=0.028 Sum_probs=60.4
Q ss_pred cCCCCCCCeEEEEcC--CCCHhHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc----CCCCCC
Q psy8370 76 KKSDPGKTRVLDVGA--GIGRISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF----KPEDLN 148 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~--G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~----~~~~~~ 148 (256)
.....++.+||-.|+ |.|..+..++. .|+ +|++++.+++..+.+++. +.. .....+-.+. ......
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~~~~~~~ 207 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----GAW--QVINYREEDLVERLKEITGG 207 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHTTT
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCC--EEEECCCccHHHHHHHHhCC
Confidence 346678899999994 45666655554 466 899999998877777652 111 1221110110 000001
Q ss_pred CceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 149 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
..+|+|+.+.. . ..++.+.+.|+++|.+++..
T Consensus 208 ~~~D~vi~~~g-~--------~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 208 KKVRVVYDSVG-R--------DTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp CCEEEEEECSC-G--------GGHHHHHHTEEEEEEEEECC
T ss_pred CCceEEEECCc-h--------HHHHHHHHHhcCCCEEEEEe
Confidence 25999998754 1 34567788999999998764
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=91.09 E-value=1.4 Score=36.99 Aligned_cols=98 Identities=12% Similarity=0.047 Sum_probs=61.0
Q ss_pred CCCCCCCeEEEEcC--CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc------------
Q psy8370 77 KSDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF------------ 142 (256)
Q Consensus 77 ~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~------------ 142 (256)
....++.+||-+|+ |.|..+..++.....++++++.++.-++.+++. +.. .++...-.+.
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~d~~~~~~~~~~~~~ 297 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAM----GAE--AIIDRNAEGYRFWKDENTQDPK 297 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCC--EEEETTTTTCCSEEETTEECHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhh----CCc--EEEecCcCcccccccccccchH
Confidence 46678899999997 356777777665434899999888888877653 111 1221111000
Q ss_pred ---------CCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 143 ---------KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 143 ---------~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
....+...+|+|+-...- ..+..+.+.|+++|.+++.-
T Consensus 298 ~~~~~~~~i~~~t~g~g~Dvvid~~G~---------~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 298 EWKRFGKRIRELTGGEDIDIVFEHPGR---------ETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECSCH---------HHHHHHHHHEEEEEEEEESC
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEcCCc---------hhHHHHHHHhhCCcEEEEEe
Confidence 000001269999875331 35667788999999999853
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.02 E-value=0.36 Score=37.72 Aligned_cols=77 Identities=10% Similarity=0.032 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|-.|++.|. ++..|++.|+ +|++++.++..++...+.+...+.++ .++.+|+.+...... .+
T Consensus 7 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~~~~g 84 (280)
T 3tox_A 7 EGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEA-AALAGDVGDEALHEALVELAVRRFG 84 (280)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTTCCE-EECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcE-EEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46778878877663 5566667777 89999999888777776665544456 777788776432110 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 85 ~iD~lvnnAg 94 (280)
T 3tox_A 85 GLDTAFNNAG 94 (280)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899998754
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=90.93 E-value=1.1 Score=34.46 Aligned_cols=77 Identities=14% Similarity=0.076 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-cCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK-DCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
.++++|-.|++.|. ++..|++.|+ +|+.++.+++.++.+.+.+.. .+.++ .++..|+.+...... .
T Consensus 19 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~~~~ 96 (266)
T 4egf_A 19 DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGTDV-HTVAIDLAEPDAPAELARRAAEAF 96 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCE-EEEECCTTSTTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcE-EEEEecCCCHHHHHHHHHHHHHHc
Confidence 46778877776653 5566666777 899999998877776666554 34466 788889877542111 1
Q ss_pred CceeEEEechh
Q psy8370 149 IKYDVIWIQWV 159 (256)
Q Consensus 149 ~~~D~V~~~~~ 159 (256)
+..|+++.+..
T Consensus 97 g~id~lv~nAg 107 (266)
T 4egf_A 97 GGLDVLVNNAG 107 (266)
T ss_dssp TSCSEEEEECC
T ss_pred CCCCEEEECCC
Confidence 36899998754
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=90.91 E-value=1.3 Score=33.88 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=49.0
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|-.|++.| .++..|+++|+ +|+.+|.+++..+...+.+ +.++ .++.+|+.+...... .+
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~-~~~~~D~~~~~~v~~~~~~~~~~~g 81 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEI---GPAA-YAVQMDVTRQDSIDAAIAATVEHAG 81 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTE-EEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCCc-eEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 4678888887665 35566667777 8999999987666555444 2345 778888876432110 23
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 82 ~id~lv~~Ag 91 (259)
T 4e6p_A 82 GLDILVNNAA 91 (259)
T ss_dssp SCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899998754
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.89 E-value=1.3 Score=34.39 Aligned_cols=78 Identities=14% Similarity=0.050 Sum_probs=52.0
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeC-------------CHHHHHHHHHHHHhcCCCcceEEEccccccC
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQ-------------SSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 143 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~-------------s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~ 143 (256)
-.++++|-.|++.|. ++..|++.|+ +|+.+|. ++..++...+.....+.++ .++..|+.+..
T Consensus 9 l~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~ 86 (277)
T 3tsc_A 9 LEGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRI-VAAVVDTRDFD 86 (277)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCE-EEEECCTTCHH
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeE-EEEECCCCCHH
Confidence 346788888877763 5666777787 8999988 5666666655555545566 77888887653
Q ss_pred CCCC--------CCceeEEEechh
Q psy8370 144 PEDL--------NIKYDVIWIQWV 159 (256)
Q Consensus 144 ~~~~--------~~~~D~V~~~~~ 159 (256)
.... .+..|+++.+..
T Consensus 87 ~v~~~~~~~~~~~g~id~lvnnAg 110 (277)
T 3tsc_A 87 RLRKVVDDGVAALGRLDIIVANAG 110 (277)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 2110 136899998754
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.84 E-value=0.87 Score=35.36 Aligned_cols=77 Identities=17% Similarity=0.156 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC---CcceEEEccccccCCCCC-------
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD---KLDKCYNVGIQDFKPEDL------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~i~~~~~~d~~~~~~~~~------- 147 (256)
.++++|-.|++.| .++..|++.|+ +|++++.++..++...+.+...+. ++ .++.+|+.+......
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~~ 82 (280)
T 1xkq_A 5 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQV-NSVVADVTTEDGQDQIINSTLK 82 (280)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGE-EEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcce-EEEEecCCCHHHHHHHHHHHHH
Confidence 3567887776655 35555666777 899999998777666555544332 45 778888876432110
Q ss_pred -CCceeEEEechh
Q psy8370 148 -NIKYDVIWIQWV 159 (256)
Q Consensus 148 -~~~~D~V~~~~~ 159 (256)
.+.+|+++.+..
T Consensus 83 ~~g~iD~lv~nAg 95 (280)
T 1xkq_A 83 QFGKIDVLVNNAG 95 (280)
T ss_dssp HHSCCCEEEECCC
T ss_pred hcCCCCEEEECCC
Confidence 136899998754
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.76 E-value=1.7 Score=33.20 Aligned_cols=75 Identities=20% Similarity=0.159 Sum_probs=48.6
Q ss_pred CeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CCce
Q psy8370 83 TRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NIKY 151 (256)
Q Consensus 83 ~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~~~ 151 (256)
+++|-.|++.| .++..|++.|+ +|++++.++...+...+.+...+.++ .++..|+.+...... .+.+
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~v~~~~~~~~~~~g~i 80 (256)
T 1geg_A 3 KVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHA-VAVKVDVSDRDQVFAAVEQARKTLGGF 80 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCE-EEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcE-EEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 56777776655 35555666777 89999999877666655555444455 778888876432100 1368
Q ss_pred eEEEechh
Q psy8370 152 DVIWIQWV 159 (256)
Q Consensus 152 D~V~~~~~ 159 (256)
|+++.+..
T Consensus 81 d~lv~nAg 88 (256)
T 1geg_A 81 DVIVNNAG 88 (256)
T ss_dssp CEEEECCC
T ss_pred CEEEECCC
Confidence 99998753
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=90.73 E-value=1.3 Score=34.18 Aligned_cols=106 Identities=11% Similarity=0.093 Sum_probs=59.2
Q ss_pred CCCeEEEEcCC--CC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------
Q psy8370 81 GKTRVLDVGAG--IG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G--~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-------- 147 (256)
.++++|-.|++ .| .++..|++.|+ +|+.++.++...+.+.+ +......+ .++..|+.+......
T Consensus 5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~-l~~~~~~~-~~~~~D~~~~~~v~~~~~~~~~~ 81 (275)
T 2pd4_A 5 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRP-IAQELNSP-YVYELDVSKEEHFKSLYNSVKKD 81 (275)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHH-HHHHTTCC-CEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-HHHhcCCc-EEEEcCCCCHHHHHHHHHHHHHH
Confidence 35788888875 33 24455555676 89999988752222222 22211235 778888876431110
Q ss_pred CCceeEEEechhhh----------ccCHHHHH-----------HHHHHHhhhcCCCcEEEEEe
Q psy8370 148 NIKYDVIWIQWVLM----------FILDEDII-----------KFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~----------~~~~~~~~-----------~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+.+|+++.+.... ..+.+++. .+.+.+.+.|+++|.++...
T Consensus 82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 144 (275)
T 2pd4_A 82 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLS 144 (275)
T ss_dssp TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 13689999875432 23333332 23455566666678777654
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=90.69 E-value=2.5 Score=28.77 Aligned_cols=92 Identities=14% Similarity=0.065 Sum_probs=51.6
Q ss_pred CCeEEEEcCCC-CH-hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC--CCCCceeEEEec
Q psy8370 82 KTRVLDVGAGI-GR-ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIWIQ 157 (256)
Q Consensus 82 ~~~vLDiG~G~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~--~~~~~~D~V~~~ 157 (256)
..+|+=+|+|. |. ++..|.+.|. +|+++|.+++.++.+++. .. .++.+|..+.... .....+|+|+..
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~------~~-~~~~gd~~~~~~l~~~~~~~~d~vi~~ 77 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDE------GF-DAVIADPTDESFYRSLDLEGVSAVLIT 77 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT------TC-EEEECCTTCHHHHHHSCCTTCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHC------CC-cEEECCCCCHHHHHhCCcccCCEEEEe
Confidence 45788899853 22 3334444566 899999999877665532 23 6677777654211 011258988875
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
.. +......+-...+.+. ...++.
T Consensus 78 ~~-----~~~~n~~~~~~a~~~~-~~~iia 101 (141)
T 3llv_A 78 GS-----DDEFNLKILKALRSVS-DVYAIV 101 (141)
T ss_dssp CS-----CHHHHHHHHHHHHHHC-CCCEEE
T ss_pred cC-----CHHHHHHHHHHHHHhC-CceEEE
Confidence 33 1222233334444455 455554
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=90.68 E-value=3.8 Score=31.63 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=52.2
Q ss_pred eEEEEcCCC-C-HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhh
Q psy8370 84 RVLDVGAGI-G-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 161 (256)
Q Consensus 84 ~vLDiG~G~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~ 161 (256)
+|.=||+|. | .++..+...+. +|+++|.+++..+.+.+ .+ +......+..+. . ..|+|+...
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~----~g--~~~~~~~~~~~~----~--~~D~vi~av--- 65 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVE----RQ--LVDEAGQDLSLL----Q--TAKIIFLCT--- 65 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TT--SCSEEESCGGGG----T--TCSEEEECS---
T ss_pred EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHh----CC--CCccccCCHHHh----C--CCCEEEEEC---
Confidence 577788874 2 34445555566 89999999887665532 12 101122333332 2 479988763
Q ss_pred ccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 162 FILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 162 ~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
++.....+++.+...++++..++-
T Consensus 66 --~~~~~~~~~~~l~~~~~~~~~vv~ 89 (279)
T 2f1k_A 66 --PIQLILPTLEKLIPHLSPTAIVTD 89 (279)
T ss_dssp --CHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred --CHHHHHHHHHHHHhhCCCCCEEEE
Confidence 334456778888888888776543
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=90.63 E-value=0.18 Score=40.97 Aligned_cols=98 Identities=14% Similarity=0.018 Sum_probs=59.3
Q ss_pred cCCCCCCCeEEEEcC--CCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc----CCCCCC
Q psy8370 76 KKSDPGKTRVLDVGA--GIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF----KPEDLN 148 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~----~~~~~~ 148 (256)
.....++.+||-.|+ |.|..+..++.. |+ +|++++.+++-++.+++. +.. .....+-.+. ......
T Consensus 157 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~~~~~~~ 229 (354)
T 2j8z_A 157 VGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKL----GAA--AGFNYKKEDFSEATLKFTKG 229 (354)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHTTT
T ss_pred hcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCc--EEEecCChHHHHHHHHHhcC
Confidence 345678899999984 456666665544 55 899999999887777432 111 1121111110 000001
Q ss_pred CceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 149 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
..+|+|+.+..-. .++.+.+.|+++|.+++..
T Consensus 230 ~~~d~vi~~~G~~---------~~~~~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 230 AGVNLILDCIGGS---------YWEKNVNCLALDGRWVLYG 261 (354)
T ss_dssp SCEEEEEESSCGG---------GHHHHHHHEEEEEEEEECC
T ss_pred CCceEEEECCCch---------HHHHHHHhccCCCEEEEEe
Confidence 2599998765421 3456678899999998864
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=90.59 E-value=1.2 Score=36.11 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=66.0
Q ss_pred CCeEEEEcCCC-C-HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 82 KTRVLDVGAGI-G-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 82 ~~~vLDiG~G~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
..+|.=||+|. | .++..|+..|+ +|+++|.+++.++.+.+. + + . ...+..+...... ..|+|+...-
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~----g--~-~-~~~s~~e~~~~a~--~~DvVi~~vp 90 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALERE----G--I-A-GARSIEEFCAKLV--KPRVVWLMVP 90 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTT----T--C-B-CCSSHHHHHHHSC--SSCEEEECSC
T ss_pred CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHC----C--C-E-EeCCHHHHHhcCC--CCCEEEEeCC
Confidence 46888898873 2 34555556676 899999998866654432 1 2 1 1223333221111 3599887632
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
......+++.+...|++|..++-... ....+...+.+.+.+.|...+..
T Consensus 91 -----~~~v~~vl~~l~~~l~~g~iiId~st--------------~~~~~~~~~~~~l~~~g~~~vda 139 (358)
T 4e21_A 91 -----AAVVDSMLQRMTPLLAANDIVIDGGN--------------SHYQDDIRRADQMRAQGITYVDV 139 (358)
T ss_dssp -----GGGHHHHHHHHGGGCCTTCEEEECSS--------------CCHHHHHHHHHHHHTTTCEEEEE
T ss_pred -----HHHHHHHHHHHHhhCCCCCEEEeCCC--------------CChHHHHHHHHHHHHCCCEEEeC
Confidence 22345677888888988766654210 11112344556667777765543
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.59 E-value=1.5 Score=33.77 Aligned_cols=77 Identities=8% Similarity=0.019 Sum_probs=49.2
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEE-eCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLL-EQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~v-D~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
.+++||=.|++.|. ++..|++.|+ +|+.+ ..+++..+...+.+...+.++ .++.+|+.+...... .
T Consensus 25 ~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~v~~~~~~~~~~~ 102 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAADAVVAAITESGGEA-VAIPGDVGNAADIAAMFSAVDRQF 102 (272)
T ss_dssp CSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEE-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHHHHHHHHHhcCCcE-EEEEcCCCCHHHHHHHHHHHHHhC
Confidence 45678877766552 4555666677 67665 677777776666666555566 788888876532110 1
Q ss_pred CceeEEEechh
Q psy8370 149 IKYDVIWIQWV 159 (256)
Q Consensus 149 ~~~D~V~~~~~ 159 (256)
+.+|+++.+..
T Consensus 103 g~id~li~nAg 113 (272)
T 4e3z_A 103 GRLDGLVNNAG 113 (272)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 36899998754
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.56 E-value=1 Score=35.46 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=49.7
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC---CcceEEEccccccCCCCC-------
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD---KLDKCYNVGIQDFKPEDL------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~i~~~~~~d~~~~~~~~~------- 147 (256)
.++++|-.|++.| .++..|++.|+ +|++++.++..++...+.+...+. ++ .++.+|+.+......
T Consensus 25 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~~ 102 (297)
T 1xhl_A 25 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKI-NAVVADVTEASGQDDIINTTLA 102 (297)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGE-EEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceE-EEEecCCCCHHHHHHHHHHHHH
Confidence 4567887776655 24555666677 899999998777666555554333 45 778888876432110
Q ss_pred -CCceeEEEechh
Q psy8370 148 -NIKYDVIWIQWV 159 (256)
Q Consensus 148 -~~~~D~V~~~~~ 159 (256)
.+.+|+++.+..
T Consensus 103 ~~g~iD~lvnnAG 115 (297)
T 1xhl_A 103 KFGKIDILVNNAG 115 (297)
T ss_dssp HHSCCCEEEECCC
T ss_pred hcCCCCEEEECCC
Confidence 136899998754
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=90.56 E-value=0.19 Score=39.67 Aligned_cols=92 Identities=9% Similarity=-0.008 Sum_probs=57.9
Q ss_pred CCCCCeEEEEcC--CCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccc-cccCCCCCCCceeEE
Q psy8370 79 DPGKTRVLDVGA--GIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI-QDFKPEDLNIKYDVI 154 (256)
Q Consensus 79 ~~~~~~vLDiG~--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~-~~~~~~~~~~~~D~V 154 (256)
..++.+||-+|+ |.|..+..++.. |+ +|++++.+++-.+.+++. +.. ..+..+- .++...-. .+|+|
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----ga~--~~~~~~~~~~~~~~~~--~~d~v 193 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLAL----GAE--EAATYAEVPERAKAWG--GLDLV 193 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHT----TCS--EEEEGGGHHHHHHHTT--SEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhc----CCC--EEEECCcchhHHHHhc--CceEE
Confidence 677899999997 456777776654 55 899999998877776542 211 2222110 11110003 69999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+. ..- ..++.+.+.|+++|.++...
T Consensus 194 id-~g~---------~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 194 LE-VRG---------KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp EE-CSC---------TTHHHHHTTEEEEEEEEEC-
T ss_pred EE-CCH---------HHHHHHHHhhccCCEEEEEe
Confidence 87 431 24567788999999988753
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.53 E-value=0.27 Score=39.88 Aligned_cols=99 Identities=20% Similarity=0.144 Sum_probs=61.2
Q ss_pred ccCCCCCCCeEEEEcC--CCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC---CCCCC
Q psy8370 75 QKKSDPGKTRVLDVGA--GIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK---PEDLN 148 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~---~~~~~ 148 (256)
+.....++.+||-+|+ |.|..+..++.. |+ +|++++.+++-.+.+++. +.. ..+..+-.++. .....
T Consensus 161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~--~~~~~~~~~~~~~~~~~~~ 233 (353)
T 4dup_A 161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERL----GAK--RGINYRSEDFAAVIKAETG 233 (353)
T ss_dssp TTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHHS
T ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCC--EEEeCCchHHHHHHHHHhC
Confidence 3456778899999953 356666666654 55 899999999888877653 111 12211111110 00001
Q ss_pred CceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 149 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+.+|+|+.+..- ..++.+.+.|+++|.+++..
T Consensus 234 ~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 234 QGVDIILDMIGA---------AYFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp SCEEEEEESCCG---------GGHHHHHHTEEEEEEEEECC
T ss_pred CCceEEEECCCH---------HHHHHHHHHhccCCEEEEEE
Confidence 269999976442 14566788999999998864
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.52 E-value=1 Score=34.71 Aligned_cols=77 Identities=21% Similarity=0.169 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCcceEEEccccccCCCCC--------
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD--CDKLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~i~~~~~~d~~~~~~~~~-------- 147 (256)
.++++|-.|++.| .++..|++.|+ +|++++.++...+...+.+... +.++ .++.+|+.+......
T Consensus 12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~v~~~~~~~~~~ 89 (267)
T 1iy8_A 12 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEV-LTTVADVSDEAQVEAYVTATTER 89 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCE-EEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceE-EEEEccCCCHHHHHHHHHHHHHH
Confidence 4577888887665 35566666777 8999999987766655555433 3355 677888876432110
Q ss_pred CCceeEEEechh
Q psy8370 148 NIKYDVIWIQWV 159 (256)
Q Consensus 148 ~~~~D~V~~~~~ 159 (256)
.+.+|+++.+..
T Consensus 90 ~g~id~lv~nAg 101 (267)
T 1iy8_A 90 FGRIDGFFNNAG 101 (267)
T ss_dssp HSCCSEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 136899998754
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=90.42 E-value=2.8 Score=33.13 Aligned_cols=100 Identities=12% Similarity=0.148 Sum_probs=54.9
Q ss_pred CCCCeEEEEcCCC-C-HhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 80 PGKTRVLDVGAGI-G-RISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 80 ~~~~~vLDiG~G~-G-~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
.+..+|.=||+|. | .++..++..+. .+++.+|++++....+.....-...++ .. ..|..++ . ..|+|+.
T Consensus 12 ~~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i-~~-t~d~~~l----~--~aD~Vi~ 83 (303)
T 2i6t_A 12 KTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNV-EI-SKDLSAS----A--HSKVVIF 83 (303)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTE-EE-ESCGGGG----T--TCSEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCe-EE-eCCHHHH----C--CCCEEEE
Confidence 3457899999995 3 35555655553 389999999864334443332211233 22 2444322 1 4799998
Q ss_pred ch------------hhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 157 QW------------VLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 157 ~~------------~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.. ..... +-...+++.+.+.. |++.+++..+
T Consensus 84 aag~~~pG~tR~dl~~~n~--~i~~~i~~~i~~~~-p~a~iiv~sN 126 (303)
T 2i6t_A 84 TVNSLGSSQSYLDVVQSNV--DMFRALVPALGHYS-QHSVLLVASQ 126 (303)
T ss_dssp CCCC----CCHHHHHHHHH--HHHHHHHHHHHHHT-TTCEEEECSS
T ss_pred cCCCCCCCCCHHHHHHHHH--HHHHHHHHHHHHhC-CCeEEEEcCC
Confidence 74 12222 33455667777765 9999887644
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.37 E-value=1.1 Score=34.67 Aligned_cols=79 Identities=11% Similarity=0.019 Sum_probs=51.6
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCC------------HHHHHHHHHHHHhcCCCcceEEEccccccCC
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQS------------SKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 144 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s------------~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~ 144 (256)
-.++++|-.|++.|. ++..|++.|+ +|+.+|.+ ...++...+.....+.++ .++..|+.+...
T Consensus 8 l~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~ 85 (281)
T 3s55_A 8 FEGKTALITGGARGMGRSHAVALAEAGA-DIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRC-ISAKVDVKDRAA 85 (281)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCE-EEEECCTTCHHH
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeE-EEEeCCCCCHHH
Confidence 346788888877663 5666667787 89999986 555555555555555566 788888876532
Q ss_pred CCC--------CCceeEEEechhh
Q psy8370 145 EDL--------NIKYDVIWIQWVL 160 (256)
Q Consensus 145 ~~~--------~~~~D~V~~~~~l 160 (256)
... .+.+|+++.+...
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~ 109 (281)
T 3s55_A 86 LESFVAEAEDTLGGIDIAITNAGI 109 (281)
T ss_dssp HHHHHHHHHHHHTCCCEEEECCCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 110 1368999987543
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.37 E-value=1.3 Score=34.44 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=53.0
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeC-CHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQ-SSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~-s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-------- 147 (256)
..++++|-.|++.|. ++..|++.|+ +|+.++. +++..+...+.+...+.++ .++.+|+.+......
T Consensus 27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~~~ 104 (280)
T 4da9_A 27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGARV-IFLRADLADLSSHQATVDAVVAE 104 (280)
T ss_dssp CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTCCE-EEEECCTTSGGGHHHHHHHHHHH
T ss_pred cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCcE-EEEEecCCCHHHHHHHHHHHHHH
Confidence 456788888877663 5666667777 8999985 6666666666665555566 788889877543111
Q ss_pred CCceeEEEechhh
Q psy8370 148 NIKYDVIWIQWVL 160 (256)
Q Consensus 148 ~~~~D~V~~~~~l 160 (256)
.+..|+++.+...
T Consensus 105 ~g~iD~lvnnAg~ 117 (280)
T 4da9_A 105 FGRIDCLVNNAGI 117 (280)
T ss_dssp HSCCCEEEEECC-
T ss_pred cCCCCEEEECCCc
Confidence 1368999987544
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=90.31 E-value=1.2 Score=36.99 Aligned_cols=94 Identities=19% Similarity=0.160 Sum_probs=58.5
Q ss_pred CCeEEEEcCCC-CH-hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC--CCCCCceeEEEec
Q psy8370 82 KTRVLDVGAGI-GR-ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP--EDLNIKYDVIWIQ 157 (256)
Q Consensus 82 ~~~vLDiG~G~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~--~~~~~~~D~V~~~ 157 (256)
..+|+=+|+|. |. ++..|.+.+. .|+++|.+++.++.+++. .+ .++.+|..+... ..+...+|+|++.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~------g~-~vi~GDat~~~~L~~agi~~A~~viv~ 75 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKF------GM-KVFYGDATRMDLLESAGAAKAEVLINA 75 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHT------TC-CCEESCTTCHHHHHHTTTTTCSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhC------CC-eEEEcCCCCHHHHHhcCCCccCEEEEC
Confidence 45788888753 22 2333334455 899999999988877642 34 678888876532 1112368888775
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
. +++.....+-...+.+.|+..++..
T Consensus 76 ~-----~~~~~n~~i~~~ar~~~p~~~Iiar 101 (413)
T 3l9w_A 76 I-----DDPQTNLQLTEMVKEHFPHLQIIAR 101 (413)
T ss_dssp C-----SSHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred C-----CChHHHHHHHHHHHHhCCCCeEEEE
Confidence 3 2233344555667778888777775
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.25 E-value=2 Score=33.28 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|-.|++.|. ++..|++.|+ +|+.++.++...+...+.. +.++ .++..|+.+...... .+
T Consensus 26 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~-~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (277)
T 4dqx_A 26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEI---GSKA-FGVRVDVSSAKDAESMVEKTTAKWG 100 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---CTTE-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCce-EEEEecCCCHHHHHHHHHHHHHHcC
Confidence 46788888877663 5666667777 8999999987666554443 2345 777888876432110 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 101 ~iD~lv~nAg 110 (277)
T 4dqx_A 101 RVDVLVNNAG 110 (277)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899998754
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=90.19 E-value=1.2 Score=34.82 Aligned_cols=106 Identities=16% Similarity=0.047 Sum_probs=63.1
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHH-------HHHHHHHHHHhcCCCcceEEEccccccCCCCC---
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSK-------FIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~-------~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--- 147 (256)
.++++|-.|++.| .++..|+++|+ +|+.++.++. .++...+.+...+.++ .++.+|+.+......
T Consensus 8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~v~~~~~ 85 (285)
T 3sc4_A 8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQA-LPIVGDIRDGDAVAAAVA 85 (285)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEE-EEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcE-EEEECCCCCHHHHHHHHH
Confidence 4678888887766 35566666777 8999998865 2344444444444456 788888876532110
Q ss_pred -----CCceeEEEechhh------hccCHHHHH-----------HHHHHHhhhcC--CCcEEEEE
Q psy8370 148 -----NIKYDVIWIQWVL------MFILDEDII-----------KFLNLCKQILN--KNGIIIIK 188 (256)
Q Consensus 148 -----~~~~D~V~~~~~l------~~~~~~~~~-----------~~l~~~~~~Lk--pgG~l~i~ 188 (256)
.+..|+++.+... ...+.+++. .+.+.+.+.|+ .+|.++..
T Consensus 86 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~i 150 (285)
T 3sc4_A 86 KTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTL 150 (285)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEEC
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 1368999987542 223333333 24455566665 35677664
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=90.10 E-value=0.15 Score=41.43 Aligned_cols=97 Identities=11% Similarity=0.005 Sum_probs=59.6
Q ss_pred CCCCCC--CeEEEEcC--CCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC-----CCC
Q psy8370 77 KSDPGK--TRVLDVGA--GIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK-----PED 146 (256)
Q Consensus 77 ~~~~~~--~~vLDiG~--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~-----~~~ 146 (256)
....++ .+||-.|+ |.|..+..++.. |+.+|++++.+++-.+.+++.+ +.. ... |..+.. ...
T Consensus 154 ~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~---g~~--~~~--d~~~~~~~~~~~~~ 226 (357)
T 2zb4_A 154 GHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL---GFD--AAI--NYKKDNVAEQLRES 226 (357)
T ss_dssp SCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS---CCS--EEE--ETTTSCHHHHHHHH
T ss_pred cCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc---CCc--eEE--ecCchHHHHHHHHh
Confidence 356677 89999997 455566555554 4448999999987666665422 211 111 221110 000
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
..+.+|+|+.+..- ..++.+.+.|+++|.+++..
T Consensus 227 ~~~~~d~vi~~~G~---------~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 227 CPAGVDVYFDNVGG---------NISDTVISQMNENSHIILCG 260 (357)
T ss_dssp CTTCEEEEEESCCH---------HHHHHHHHTEEEEEEEEECC
T ss_pred cCCCCCEEEECCCH---------HHHHHHHHHhccCcEEEEEC
Confidence 01259999876541 45677889999999998864
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=90.04 E-value=1.5 Score=33.63 Aligned_cols=106 Identities=13% Similarity=0.145 Sum_probs=58.4
Q ss_pred CCCeEEEEcCC--CC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------C
Q psy8370 81 GKTRVLDVGAG--IG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------L 147 (256)
Q Consensus 81 ~~~~vLDiG~G--~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~ 147 (256)
.++++|-.|++ .| .++..|++.|+ +|+.++.++...+.+.+.....+ .. .++.+|+.+..... .
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~-~~-~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLG-SD-IVLQCDVAEDASIDTMFAELGKV 84 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTT-CC-CEEECCTTCHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHHhcC-Cc-EEEEccCCCHHHHHHHHHHHHHH
Confidence 45678888875 33 24555666677 89999887632222222212112 34 57778876542110 1
Q ss_pred CCceeEEEechhhhc-----------cCHHHHHH-----------HHHHHhhhcCCCcEEEEEe
Q psy8370 148 NIKYDVIWIQWVLMF-----------ILDEDIIK-----------FLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~-----------~~~~~~~~-----------~l~~~~~~LkpgG~l~i~~ 189 (256)
.+.+|+++.+..... .+.+++.. +++.+.+.++++|.++...
T Consensus 85 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 148 (265)
T 1qsg_A 85 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLS 148 (265)
T ss_dssp CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEc
Confidence 136899998754322 33333332 3445566666667777654
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=90.00 E-value=0.22 Score=39.94 Aligned_cols=96 Identities=14% Similarity=-0.010 Sum_probs=60.7
Q ss_pred cCCCCCCCeEEEEcC--CCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC------CCC
Q psy8370 76 KKSDPGKTRVLDVGA--GIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK------PED 146 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~------~~~ 146 (256)
.....++.+||-.|+ |.|..+..++.. |+ +|++++.+++-.+.+++. +.. ... |..+.. ...
T Consensus 140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~----g~~--~~~--d~~~~~~~~~i~~~~ 210 (333)
T 1wly_A 140 THKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKL----GCH--HTI--NYSTQDFAEVVREIT 210 (333)
T ss_dssp TSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCS--EEE--ETTTSCHHHHHHHHH
T ss_pred hhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCC--EEE--ECCCHHHHHHHHHHh
Confidence 346678899999995 566666666554 55 899999998877777552 111 112 221110 000
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
....+|+|+.+..- ..++.+.+.|+++|.+++..
T Consensus 211 ~~~~~d~vi~~~g~---------~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 211 GGKGVDVVYDSIGK---------DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp TTCCEEEEEECSCT---------TTHHHHHHTEEEEEEEEECC
T ss_pred CCCCCeEEEECCcH---------HHHHHHHHhhccCCEEEEEe
Confidence 01259999976442 24567788999999998764
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.80 E-value=1.2 Score=34.33 Aligned_cols=77 Identities=13% Similarity=0.009 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C-
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N- 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~- 148 (256)
.++++|-.|++.|. ++..|++.|+ +|++++.++..++...+.+...+.++ .++..|+.+...... .
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~ 97 (273)
T 1ae1_A 20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNV-EGSVCDLLSRTERDKLMQTVAHVFD 97 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCE-EEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCce-EEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45778888876552 5555666677 89999999877766655555444456 778888865432110 1
Q ss_pred CceeEEEechh
Q psy8370 149 IKYDVIWIQWV 159 (256)
Q Consensus 149 ~~~D~V~~~~~ 159 (256)
+.+|+++.+..
T Consensus 98 g~id~lv~nAg 108 (273)
T 1ae1_A 98 GKLNILVNNAG 108 (273)
T ss_dssp SCCCEEEECCC
T ss_pred CCCcEEEECCC
Confidence 37899998754
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=89.76 E-value=1.3 Score=35.24 Aligned_cols=78 Identities=9% Similarity=0.049 Sum_probs=50.9
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCC------------HHHHHHHHHHHHhcCCCcceEEEccccccCC
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQS------------SKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 144 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s------------~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~ 144 (256)
-.++++|-.|++.|. ++..|++.|+ +|+++|.+ ++.++...+.....+.++ .++..|+.+...
T Consensus 44 l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~ 121 (317)
T 3oec_A 44 LQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRI-IARQADVRDLAS 121 (317)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCE-EEEECCTTCHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecccccccccccccCHHHHHHHHHHHHhcCCeE-EEEECCCCCHHH
Confidence 346788888877663 5666667777 89999876 555555555555555566 788888876432
Q ss_pred CCC--------CCceeEEEechh
Q psy8370 145 EDL--------NIKYDVIWIQWV 159 (256)
Q Consensus 145 ~~~--------~~~~D~V~~~~~ 159 (256)
... .+.+|+++.+..
T Consensus 122 v~~~~~~~~~~~g~iD~lVnnAg 144 (317)
T 3oec_A 122 LQAVVDEALAEFGHIDILVSNVG 144 (317)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 110 136899998754
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=89.75 E-value=6 Score=30.89 Aligned_cols=91 Identities=14% Similarity=0.221 Sum_probs=53.7
Q ss_pred CeEEEEcCCC-C-HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE-----------ccccccCCCCCCC
Q psy8370 83 TRVLDVGAGI-G-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN-----------VGIQDFKPEDLNI 149 (256)
Q Consensus 83 ~~vLDiG~G~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~-----------~d~~~~~~~~~~~ 149 (256)
.+|.=||+|. | .++..++..|. +|+++|.+++..+..++. + + .... .+..+....- .
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~----g--~-~~~~~~~~~~~~~~~~~~~~~~~~~--~ 73 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWPAHIEAIRKN----G--L-IADFNGEEVVANLPIFSPEEIDHQN--E 73 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHH----C--E-EEEETTEEEEECCCEECGGGCCTTS--C
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhC----C--E-EEEeCCCeeEecceeecchhhcccC--C
Confidence 4788899874 2 34455555566 899999998776665543 1 1 1111 0111111100 1
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.+|+|+... +......+++.+...++|+..++..
T Consensus 74 ~~d~vi~~v-----~~~~~~~v~~~l~~~l~~~~~iv~~ 107 (316)
T 2ew2_A 74 QVDLIIALT-----KAQQLDAMFKAIQPMITEKTYVLCL 107 (316)
T ss_dssp CCSEEEECS-----CHHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred CCCEEEEEe-----ccccHHHHHHHHHHhcCCCCEEEEe
Confidence 579888763 3334567888888889887766654
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=89.72 E-value=1.3 Score=33.92 Aligned_cols=77 Identities=18% Similarity=0.057 Sum_probs=50.7
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEE-eCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLL-EQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~v-D~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
+++++|-.|++.|. ++..|++.|+ +|+.+ +.++...+...+.+...+.++ .++.+|+.+...... .
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGY-NIVINYARSKKAALETAEEIEKLGVKV-LVVKANVGQPAKIKEMFQQIDETF 80 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCE-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcE-EEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35678877766552 5556666777 77775 888877777766666555566 788888876532110 1
Q ss_pred CceeEEEechh
Q psy8370 149 IKYDVIWIQWV 159 (256)
Q Consensus 149 ~~~D~V~~~~~ 159 (256)
+..|+++.+..
T Consensus 81 g~id~lv~nAg 91 (258)
T 3oid_A 81 GRLDVFVNNAA 91 (258)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 36899998753
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=89.56 E-value=1.2 Score=34.39 Aligned_cols=77 Identities=16% Similarity=0.025 Sum_probs=50.7
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeC-CHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQ-SSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~-s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
.++++|-.|++.|. ++..|++.|+ +|+.++. ++...+...+.+...+.++ .++.+|+.+...... .
T Consensus 27 ~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~d~~~v~~~~~~~~~~~ 104 (269)
T 4dmm_A 27 TDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADEVVAAIAAAGGEA-FAVKADVSQESEVEALFAAVIERW 104 (269)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCE-EEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCcE-EEEECCCCCHHHHHHHHHHHHHHc
Confidence 46778877776652 5566666777 7888887 6666666666666555566 778888876532110 1
Q ss_pred CceeEEEechh
Q psy8370 149 IKYDVIWIQWV 159 (256)
Q Consensus 149 ~~~D~V~~~~~ 159 (256)
+..|+++.+..
T Consensus 105 g~id~lv~nAg 115 (269)
T 4dmm_A 105 GRLDVLVNNAG 115 (269)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 36899998754
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=89.55 E-value=1 Score=34.41 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC-------CCc
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-------NIK 150 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-------~~~ 150 (256)
.++++|-.|++.|. ++..|++.|+ +|++++.+++.++.+.+.+...+.++ .++.+|+.+...... .+.
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~~~g~ 83 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRI-VARSLDARNEDEVTAFLNAADAHAP 83 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEE-EEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeE-EEEECcCCCHHHHHHHHHHHHhhCC
Confidence 46788888887763 5666767787 89999999888877777776655566 788888876532110 036
Q ss_pred eeEEEechh
Q psy8370 151 YDVIWIQWV 159 (256)
Q Consensus 151 ~D~V~~~~~ 159 (256)
+|+++.+..
T Consensus 84 id~lv~nAg 92 (252)
T 3h7a_A 84 LEVTIFNVG 92 (252)
T ss_dssp EEEEEECCC
T ss_pred ceEEEECCC
Confidence 899997754
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=89.46 E-value=2.9 Score=32.21 Aligned_cols=92 Identities=9% Similarity=-0.089 Sum_probs=55.7
Q ss_pred CeEEEEcCCCCHhHHHHHH----hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 83 TRVLDVGAGIGRISKYLLA----KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 83 ~~vLDiG~G~G~~~~~l~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.+||=.|+ |.++..++. .|+ +|++++-++...+.... ..+ .++.+|+.++. .. .+|+|+...
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~------~~~-~~~~~D~~d~~--~~--~~d~vi~~a 71 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRA------SGA-EPLLWPGEEPS--LD--GVTHLLIST 71 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHH------TTE-EEEESSSSCCC--CT--TCCEEEECC
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhh------CCC-eEEEecccccc--cC--CCCEEEECC
Confidence 68999994 877766654 355 89999988764433321 245 88889998865 33 689999876
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
............+++.+.+.-..-+.++..
T Consensus 72 ~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~ 101 (286)
T 3ius_A 72 APDSGGDPVLAALGDQIAARAAQFRWVGYL 101 (286)
T ss_dssp CCBTTBCHHHHHHHHHHHHTGGGCSEEEEE
T ss_pred CccccccHHHHHHHHHHHhhcCCceEEEEe
Confidence 543332233344555554431222445443
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=89.45 E-value=0.38 Score=38.72 Aligned_cols=102 Identities=11% Similarity=-0.085 Sum_probs=58.7
Q ss_pred CCCCCCCeEEEEcCCCC-HhHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC-CCCCCceeE
Q psy8370 77 KSDPGKTRVLDVGAGIG-RISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP-EDLNIKYDV 153 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G-~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~-~~~~~~~D~ 153 (256)
....++.+||=+|+|.+ .++..+++ .+..+|+++|.+++-++.+++.-.. .+......|..+... ..+...+|.
T Consensus 159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~---~~i~~~~~~~~~~v~~~t~g~g~d~ 235 (348)
T 4eez_A 159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGAD---VTINSGDVNPVDEIKKITGGLGVQS 235 (348)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCS---EEEEC-CCCHHHHHHHHTTSSCEEE
T ss_pred cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCe---EEEeCCCCCHHHHhhhhcCCCCceE
Confidence 35678899999999864 34444444 3455999999999876666543211 110111222211110 011124676
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
++.... . ...+....+.|+++|.+++..
T Consensus 236 ~~~~~~------~--~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 236 AIVCAV------A--RIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp EEECCS------C--HHHHHHHHHTEEEEEEEEECC
T ss_pred EEEecc------C--cchhheeheeecCCceEEEEe
Confidence 665422 1 246777889999999998863
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.39 E-value=0.48 Score=37.83 Aligned_cols=96 Identities=13% Similarity=0.089 Sum_probs=56.8
Q ss_pred CCCCCC-eEEEEcC--CCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc-cc-cccCCCCCCCce
Q psy8370 78 SDPGKT-RVLDVGA--GIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GI-QDFKPEDLNIKY 151 (256)
Q Consensus 78 ~~~~~~-~vLDiG~--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~-d~-~~~~~~~~~~~~ 151 (256)
...++. +||-+|+ |.|..+..++.. |+ +|++++.+++-++.+++. +.. ..+.. +. .+.......+.+
T Consensus 145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~l----Ga~--~~i~~~~~~~~~~~~~~~~~~ 217 (328)
T 1xa0_A 145 GLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVL----GAK--EVLAREDVMAERIRPLDKQRW 217 (328)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHT----TCS--EEEECC---------CCSCCE
T ss_pred CCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc----CCc--EEEecCCcHHHHHHHhcCCcc
Confidence 455554 8999997 466777777654 55 799999998777777542 211 11111 11 010000011269
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|+|+....- ..++.+.+.|+++|.+++..
T Consensus 218 d~vid~~g~---------~~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 218 AAAVDPVGG---------RTLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp EEEEECSTT---------TTHHHHHHTEEEEEEEEECS
T ss_pred cEEEECCcH---------HHHHHHHHhhccCCEEEEEe
Confidence 999876431 13556778999999998863
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=89.27 E-value=2.6 Score=35.19 Aligned_cols=97 Identities=14% Similarity=0.063 Sum_probs=60.1
Q ss_pred CCCCCCCeEEEEcC--CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE---cccccc---------
Q psy8370 77 KSDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN---VGIQDF--------- 142 (256)
Q Consensus 77 ~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~---~d~~~~--------- 142 (256)
....++.+||-+|+ |.|..+..++.....++++++.+++-++.+++. +.. ..+. .++.+.
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~l----Ga~--~~i~~~~~~~~~~~~~~~~~~~ 289 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRAL----GCD--LVINRAELGITDDIADDPRRVV 289 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCC--CEEEHHHHTCCTTGGGCHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCC--EEEecccccccccccccccccc
Confidence 46788899999996 356677776665434899999998877777542 211 1121 111000
Q ss_pred ----------CCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 143 ----------KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 143 ----------~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
....+ ..+|+|+....- ..++.+.+.|+++|.+++..
T Consensus 290 ~~~~~~~~~v~~~~g-~g~Dvvid~~G~---------~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 290 ETGRKLAKLVVEKAG-REPDIVFEHTGR---------VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHHHS-SCCSEEEECSCH---------HHHHHHHHHSCTTCEEEESC
T ss_pred hhhhHHHHHHHHHhC-CCceEEEECCCc---------hHHHHHHHHHhcCCEEEEEe
Confidence 00001 259999876431 24567778999999999864
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=89.27 E-value=4 Score=31.60 Aligned_cols=106 Identities=12% Similarity=0.023 Sum_probs=59.3
Q ss_pred CCCeEEEEcCC--CC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------
Q psy8370 81 GKTRVLDVGAG--IG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G--~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-------- 147 (256)
.++++|-.|++ .| .++..|++.|+ +|++++.++...+.+.+.....+ .+ .++.+|+.+......
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~-~~-~~~~~Dl~~~~~v~~~~~~~~~~ 96 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPKLEKRVREIAKGFG-SD-LVVKCDVSLDEDIKNLKKFLEEN 96 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT-CC-CEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-Ce-EEEEcCCCCHHHHHHHHHHHHHH
Confidence 45788888875 33 24455556676 89999988752222222222222 35 678888876432110
Q ss_pred CCceeEEEechhhh----------ccCHHHHH-----------HHHHHHhhhcC-CCcEEEEEe
Q psy8370 148 NIKYDVIWIQWVLM----------FILDEDII-----------KFLNLCKQILN-KNGIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~----------~~~~~~~~-----------~~l~~~~~~Lk-pgG~l~i~~ 189 (256)
.+.+|+++.+.... ..+.+++. .+++.+.+.++ .+|.++...
T Consensus 97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~is 160 (285)
T 2p91_A 97 WGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLS 160 (285)
T ss_dssp TSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEE
T ss_pred cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence 13689999875432 23333332 34445566664 567777654
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=89.19 E-value=1.6 Score=33.76 Aligned_cols=106 Identities=12% Similarity=0.013 Sum_probs=62.7
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHH-------HHHHHHHHHhcCCCcceEEEccccccCCCCC---
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKF-------IEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~-------~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--- 147 (256)
.++++|-.|++.| .++..+++.|+ +|+.++.++.. ++...+.....+.++ .++..|+.+......
T Consensus 5 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~v~~~~~ 82 (274)
T 3e03_A 5 SGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQG-LALKCDIREEDQVRAAVA 82 (274)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEE-EEEECCTTCHHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhHHHHHHHHHHHHhcCCeE-EEEeCCCCCHHHHHHHHH
Confidence 4678888888776 35666777787 89999887542 333333344444456 778888876532110
Q ss_pred -----CCceeEEEechhh------hccCHHHHH-----------HHHHHHhhhcC--CCcEEEEE
Q psy8370 148 -----NIKYDVIWIQWVL------MFILDEDII-----------KFLNLCKQILN--KNGIIIIK 188 (256)
Q Consensus 148 -----~~~~D~V~~~~~l------~~~~~~~~~-----------~~l~~~~~~Lk--pgG~l~i~ 188 (256)
.+.+|+++.+... ...+.+++. .+.+.+.+.|+ .+|.++..
T Consensus 83 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~i 147 (274)
T 3e03_A 83 ATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTL 147 (274)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEEC
T ss_pred HHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEE
Confidence 1368999987542 233333332 24455555553 35777764
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=89.11 E-value=1.7 Score=33.69 Aligned_cols=77 Identities=9% Similarity=0.029 Sum_probs=50.8
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-cCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK-DCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
.++++|-.|++.|. ++..|++.|+ +|+.++.+....+.+.+.+.. .+.++ .++.+|+.+...... .
T Consensus 26 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~~~~ 103 (277)
T 4fc7_A 26 RDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGRRC-LPLSMDVRAPPAVMAAVDQALKEF 103 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSSCE-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcE-EEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46788888877663 5566666777 899999998766655555432 23456 788888876532110 1
Q ss_pred CceeEEEechh
Q psy8370 149 IKYDVIWIQWV 159 (256)
Q Consensus 149 ~~~D~V~~~~~ 159 (256)
+.+|+++.+..
T Consensus 104 g~id~lv~nAg 114 (277)
T 4fc7_A 104 GRIDILINCAA 114 (277)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCc
Confidence 36899998754
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.04 E-value=2 Score=33.56 Aligned_cols=77 Identities=13% Similarity=0.067 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-----cCCCcceEEEccccccCCCCC-----
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK-----DCDKLDKCYNVGIQDFKPEDL----- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~i~~~~~~d~~~~~~~~~----- 147 (256)
.+++||-.|++.| .++..|++.|+ +|++++.++...+...+.+.. .+.++ .++.+|+.+......
T Consensus 17 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~D~~~~~~v~~~~~~~ 94 (303)
T 1yxm_A 17 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARV-IPIQCNIRNEEEVNNLVKST 94 (303)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCE-EEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhccccCCccE-EEEecCCCCHHHHHHHHHHH
Confidence 4578888886544 24455556676 899999998777666655544 23356 778888876432110
Q ss_pred ---CCceeEEEechh
Q psy8370 148 ---NIKYDVIWIQWV 159 (256)
Q Consensus 148 ---~~~~D~V~~~~~ 159 (256)
.+.+|+|+.+..
T Consensus 95 ~~~~g~id~li~~Ag 109 (303)
T 1yxm_A 95 LDTFGKINFLVNNGG 109 (303)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 125899998754
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=88.98 E-value=0.35 Score=39.02 Aligned_cols=97 Identities=9% Similarity=0.102 Sum_probs=60.1
Q ss_pred ccCCCCCCCeEEEEcC--CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC----CCCC
Q psy8370 75 QKKSDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----EDLN 148 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~----~~~~ 148 (256)
+.....++.+||-+|+ |.|..+..++.....+|+++ .+++-++.+++. + . ..+. +-.++.. ....
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~l----G--a-~~i~-~~~~~~~~~~~~~~~ 214 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDL----G--A-TPID-ASREPEDYAAEHTAG 214 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHH----T--S-EEEE-TTSCHHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHc----C--C-CEec-cCCCHHHHHHHHhcC
Confidence 4456778899999994 45777777766533389999 788777766543 1 1 2221 1111110 0011
Q ss_pred CceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 149 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
..+|+|+.... . ..+..+.+.|+++|.+++..
T Consensus 215 ~g~D~vid~~g------~---~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 215 QGFDLVYDTLG------G---PVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp SCEEEEEESSC------T---HHHHHHHHHEEEEEEEEESC
T ss_pred CCceEEEECCC------c---HHHHHHHHHHhcCCeEEEEc
Confidence 26999987543 1 35667788999999998853
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=88.90 E-value=1.4 Score=33.23 Aligned_cols=76 Identities=18% Similarity=0.134 Sum_probs=46.4
Q ss_pred CCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHH-HhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 82 KTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEI-LKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 82 ~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
++++|=.|++.| .++..|+++|+ +|++++.++...+...+.. ...+.++ .++.+|+.+...... .+
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSAETLEETARTHWHAYADKV-LRVRADVADEGDVNAAIAATMEQFG 79 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHSTTTGGGE-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcE-EEEEecCCCHHHHHHHHHHHHHHhC
Confidence 356777776544 24455556676 8999999987666555444 2222345 778888876432110 12
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+|+.+..
T Consensus 80 ~id~li~~Ag 89 (250)
T 2cfc_A 80 AIDVLVNNAG 89 (250)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 5899988753
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=88.90 E-value=0.3 Score=39.80 Aligned_cols=96 Identities=15% Similarity=0.075 Sum_probs=56.0
Q ss_pred CCC-CCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc-cccccCCCCCCCceeE
Q psy8370 78 SDP-GKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GIQDFKPEDLNIKYDV 153 (256)
Q Consensus 78 ~~~-~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~-d~~~~~~~~~~~~~D~ 153 (256)
... ++.+||-+|+|. |..+..++.. |+ +|++++.++.-.+.+++.+ +.. ..+.. +........ +.+|+
T Consensus 183 ~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~l---Ga~--~v~~~~~~~~~~~~~--~~~D~ 254 (366)
T 1yqd_A 183 GLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKNF---GAD--SFLVSRDQEQMQAAA--GTLDG 254 (366)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHTS---CCS--EEEETTCHHHHHHTT--TCEEE
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhc---CCc--eEEeccCHHHHHHhh--CCCCE
Confidence 455 788999999753 5555665554 55 8999999987666655322 211 12211 111111111 26999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|+....... .++.+.+.|+++|.++...
T Consensus 255 vid~~g~~~--------~~~~~~~~l~~~G~iv~~g 282 (366)
T 1yqd_A 255 IIDTVSAVH--------PLLPLFGLLKSHGKLILVG 282 (366)
T ss_dssp EEECCSSCC--------CSHHHHHHEEEEEEEEECC
T ss_pred EEECCCcHH--------HHHHHHHHHhcCCEEEEEc
Confidence 987643221 2345667889999988763
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=88.87 E-value=1.9 Score=32.99 Aligned_cols=77 Identities=14% Similarity=0.043 Sum_probs=54.2
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|-.|++.|. ++..|++.|+ +|+.++.+++..+...+.+...+.++ .++..|+.+...... .+
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~~~~g 88 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKA-IGLECNVTDEQHREAVIKAALDQFG 88 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCE-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcE-EEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46788878877663 5566667787 89999999988887777776655566 778888876532110 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+++.+..
T Consensus 89 ~id~lv~nAg 98 (256)
T 3gaf_A 89 KITVLVNNAG 98 (256)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899998754
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=88.81 E-value=5.5 Score=33.53 Aligned_cols=96 Identities=14% Similarity=0.082 Sum_probs=57.9
Q ss_pred CCeEEEEcCCC-C-HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-------cC-------CCcceEEEccccccCCC
Q psy8370 82 KTRVLDVGAGI-G-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK-------DC-------DKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 82 ~~~vLDiG~G~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~-------~~i~~~~~~d~~~~~~~ 145 (256)
-.+|.-||+|. | .++..++..|+ +|+++|.+++.++.+++.... .+ .....-...|...
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~---- 111 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE---- 111 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGGG----
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHHH----
Confidence 45799999986 3 35555666676 899999999888877664321 00 0000112233321
Q ss_pred CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 146 DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 146 ~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
-. ..|+|+.... ..+ +-...+++++...++|+..++.
T Consensus 112 ~~--~aDlVIeaVp-e~~--~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 112 LS--TVDLVVEAVF-EDM--NLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp GT--TCSEEEECCC-SCH--HHHHHHHHHHHHHSCTTCEEEE
T ss_pred HC--CCCEEEEcCC-CCH--HHHHHHHHHHHhhCCCCeEEEe
Confidence 12 4799987642 111 2345688888888988876654
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=88.66 E-value=0.66 Score=37.03 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=58.0
Q ss_pred CCCCCC-eEEEEcC--CCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc-cc-cccCCCCCCCce
Q psy8370 78 SDPGKT-RVLDVGA--GIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GI-QDFKPEDLNIKY 151 (256)
Q Consensus 78 ~~~~~~-~vLDiG~--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~-d~-~~~~~~~~~~~~ 151 (256)
...++. +||-+|+ |.|..+..++.. |+ +|++++.+++-++.+++. +.. ..+.. +. .+.......+.+
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~l----Ga~--~v~~~~~~~~~~~~~~~~~~~ 218 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL----GAS--EVISREDVYDGTLKALSKQQW 218 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH----TCS--EEEEHHHHCSSCCCSSCCCCE
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCc--EEEECCCchHHHHHHhhcCCc
Confidence 455554 8999997 456667666654 55 799999988777777652 111 12211 11 111011111269
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|+|+.... . ..+..+.+.++++|.+++..
T Consensus 219 d~vid~~g------~---~~~~~~~~~l~~~G~iv~~G 247 (330)
T 1tt7_A 219 QGAVDPVG------G---KQLASLLSKIQYGGSVAVSG 247 (330)
T ss_dssp EEEEESCC------T---HHHHHHHTTEEEEEEEEECC
T ss_pred cEEEECCc------H---HHHHHHHHhhcCCCEEEEEe
Confidence 99987643 1 24667788999999998863
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=88.65 E-value=2.9 Score=28.94 Aligned_cols=95 Identities=9% Similarity=0.061 Sum_probs=54.1
Q ss_pred CCeEEEEcCCCCHhHHHHH----HhcCCeEEEEeCC-HHHHHHHHHHHHhcCCCcceEEEccccccCC--CCCCCceeEE
Q psy8370 82 KTRVLDVGAGIGRISKYLL----AKHFDKIDLLEQS-SKFIEQAKEEILKDCDKLDKCYNVGIQDFKP--EDLNIKYDVI 154 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~----~~~~~~v~~vD~s-~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~--~~~~~~~D~V 154 (256)
..+|+=+|+ |..+..++ +.+. +|+++|.+ ++..+....... ..+ .++.+|..+... ..+-...|+|
T Consensus 3 ~~~vlI~G~--G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~---~~~-~~i~gd~~~~~~l~~a~i~~ad~v 75 (153)
T 1id1_A 3 KDHFIVCGH--SILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLG---DNA-DVIPGDSNDSSVLKKAGIDRCRAI 75 (153)
T ss_dssp CSCEEEECC--SHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHC---TTC-EEEESCTTSHHHHHHHTTTTCSEE
T ss_pred CCcEEEECC--CHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhc---CCC-eEEEcCCCCHHHHHHcChhhCCEE
Confidence 456777776 55555443 3455 89999997 444444433221 234 778888765421 1111258888
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
++..- ++.....+....+.+.|...++..
T Consensus 76 i~~~~-----~d~~n~~~~~~a~~~~~~~~ii~~ 104 (153)
T 1id1_A 76 LALSD-----NDADNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp EECSS-----CHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred EEecC-----ChHHHHHHHHHHHHHCCCCEEEEE
Confidence 87632 133344555666777777777764
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=88.60 E-value=1.6 Score=35.36 Aligned_cols=88 Identities=19% Similarity=0.182 Sum_probs=54.7
Q ss_pred CCeEEEEcCC-CCHhHHHHHH-hcCCeEEEEeCCH---HHHHHHHHHHHhcCCCcceEEEccccc-cCC---CCCCCcee
Q psy8370 82 KTRVLDVGAG-IGRISKYLLA-KHFDKIDLLEQSS---KFIEQAKEEILKDCDKLDKCYNVGIQD-FKP---EDLNIKYD 152 (256)
Q Consensus 82 ~~~vLDiG~G-~G~~~~~l~~-~~~~~v~~vD~s~---~~~~~a~~~~~~~~~~i~~~~~~d~~~-~~~---~~~~~~~D 152 (256)
+.+||-+|+| .|..+..++. .|+ +|++++.++ +-.+.+++. + . ... | .+ +.. ... +.+|
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~----g--a-~~v--~-~~~~~~~~~~~~-~~~d 248 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEET----K--T-NYY--N-SSNGYDKLKDSV-GKFD 248 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHH----T--C-EEE--E-CTTCSHHHHHHH-CCEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHh----C--C-cee--c-hHHHHHHHHHhC-CCCC
Confidence 8899999984 2445555544 466 999999987 666666542 2 1 222 2 22 100 001 2599
Q ss_pred EEEechhhhccCHHHHHHHH-HHHhhhcCCCcEEEEEe
Q psy8370 153 VIWIQWVLMFILDEDIIKFL-NLCKQILNKNGIIIIKD 189 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l-~~~~~~LkpgG~l~i~~ 189 (256)
+|+...... ..+ +.+.+.|+++|.+++..
T Consensus 249 ~vid~~g~~--------~~~~~~~~~~l~~~G~iv~~g 278 (366)
T 2cdc_A 249 VIIDATGAD--------VNILGNVIPLLGRNGVLGLFG 278 (366)
T ss_dssp EEEECCCCC--------THHHHHHGGGEEEEEEEEECS
T ss_pred EEEECCCCh--------HHHHHHHHHHHhcCCEEEEEe
Confidence 998764311 245 77889999999998764
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.30 E-value=2.4 Score=32.46 Aligned_cols=77 Identities=18% Similarity=0.099 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCcceEEEccccccCCCCC--------
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD--CDKLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~i~~~~~~d~~~~~~~~~-------- 147 (256)
.++++|-.|++.| .++..|++.|+ +|++++.++...+.+.+.+... +.++ .++.+|+.+......
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~-~~~~~D~~~~~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 6 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKT-LFIQCDVADQQQLRDTFRKVVDH 83 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGE-EEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCce-EEEecCCCCHHHHHHHHHHHHHH
Confidence 4567888887655 25555666777 8999999987665554444321 1235 677888876432110
Q ss_pred CCceeEEEechh
Q psy8370 148 NIKYDVIWIQWV 159 (256)
Q Consensus 148 ~~~~D~V~~~~~ 159 (256)
.+.+|+++.+..
T Consensus 84 ~g~id~lv~~Ag 95 (267)
T 2gdz_A 84 FGRLDILVNNAG 95 (267)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 135899998754
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=87.96 E-value=1.7 Score=33.03 Aligned_cols=74 Identities=18% Similarity=0.100 Sum_probs=49.4
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|-.|++.|. ++..+++.|+ +|+.++.+++..+...+.. +.++ .++..|+.+...... .+
T Consensus 5 ~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~-~~~~~Dv~~~~~v~~~~~~~~~~~g 79 (247)
T 3rwb_A 5 AGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASI---GKKA-RAIAADISDPGSVKALFAEIQALTG 79 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---CTTE-EECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCce-EEEEcCCCCHHHHHHHHHHHHHHCC
Confidence 46788888877663 5666777787 8999999987766655544 3345 677788766432110 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 80 ~id~lv~nAg 89 (247)
T 3rwb_A 80 GIDILVNNAS 89 (247)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899997754
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.96 E-value=9.7 Score=30.99 Aligned_cols=99 Identities=13% Similarity=0.023 Sum_probs=60.4
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhh
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 160 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l 160 (256)
.+.+||.|+.+.|.++..++.. .++.+.-|--.....+.++...+..-..+...+..+ .... .||+|+...-
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~--~~~~v~~~lp- 109 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGIDESSVKFLDSTA--DYPQ--QPGVVLIKVP- 109 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEETTS--CCCS--SCSEEEEECC-
T ss_pred CCCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCCccceEeccccc--cccc--CCCEEEEEcC-
Confidence 4578999999999999888543 334543354444556666655442110112222211 1122 6899887432
Q ss_pred hccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 161 MFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
-.. ..+...|..+...|+||+.+++..
T Consensus 110 k~~--~~l~~~L~~l~~~l~~~~~i~~~g 136 (375)
T 4dcm_A 110 KTL--ALLEQQLRALRKVVTSDTRIIAGA 136 (375)
T ss_dssp SCH--HHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred CCH--HHHHHHHHHHHhhCCCCCEEEEEe
Confidence 111 456778899999999999998763
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=87.93 E-value=1.6 Score=34.21 Aligned_cols=79 Identities=13% Similarity=0.099 Sum_probs=45.6
Q ss_pred CCCCCeEEEEcCCCC--HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAGIG--RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G--~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
...++++|=+|+|.- ..+..|+..|..+|+.++-+++-.+...+.+......+ .+...+..++..... .+|+|++
T Consensus 124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~-~i~~~~~~~l~~~l~--~~DiVIn 200 (283)
T 3jyo_A 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGRE-AVVGVDARGIEDVIA--AADGVVN 200 (283)
T ss_dssp TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSC-CEEEECSTTHHHHHH--HSSEEEE
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCc-eEEEcCHHHHHHHHh--cCCEEEE
Confidence 345789999998621 13344556677689999999876665555554322222 333333323221112 5899997
Q ss_pred chhh
Q psy8370 157 QWVL 160 (256)
Q Consensus 157 ~~~l 160 (256)
.-..
T Consensus 201 aTp~ 204 (283)
T 3jyo_A 201 ATPM 204 (283)
T ss_dssp CSST
T ss_pred CCCC
Confidence 6543
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=87.89 E-value=1.9 Score=32.76 Aligned_cols=74 Identities=14% Similarity=0.011 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|-.|++.| .++..|++.|+ +|++++.++...+...+.+.. .. .++..|+.+...... .+
T Consensus 8 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~---~~-~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (248)
T 3op4_A 8 EGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISDYLGD---NG-KGMALNVTNPESIEAVLKAITDEFG 82 (248)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGG---GE-EEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcc---cc-eEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 4678888887766 35566667777 899999998877766655543 33 667778766532110 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+++.+..
T Consensus 83 ~iD~lv~nAg 92 (248)
T 3op4_A 83 GVDILVNNAG 92 (248)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899998754
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.89 E-value=2.3 Score=32.64 Aligned_cols=104 Identities=10% Similarity=0.083 Sum_probs=60.3
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|=.|++.| .++..|++.|+ +|+.++.+++.++...+.+ ..++ .++..|+.+...... .+
T Consensus 5 ~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~-~~~~~D~~~~~~v~~~~~~~~~~~g 79 (263)
T 2a4k_A 5 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAAL---EAEA-IAVVADVSDPKAVEAVFAEALEEFG 79 (263)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTC---CSSE-EEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---cCce-EEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4567887887655 35556666777 8999999987655443322 1245 677888766432110 13
Q ss_pred ceeEEEechhhhc------cCHHHHH-----------HHHHHHhhhcCCCcEEEEEe
Q psy8370 150 KYDVIWIQWVLMF------ILDEDII-----------KFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 150 ~~D~V~~~~~l~~------~~~~~~~-----------~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+|+++.+..... .+.+++. .+.+.+.+.++.+|.++...
T Consensus 80 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 136 (263)
T 2a4k_A 80 RLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTG 136 (263)
T ss_dssp CCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 6899998765322 1222222 23445555564467777653
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.89 E-value=1.9 Score=33.22 Aligned_cols=76 Identities=21% Similarity=0.059 Sum_probs=52.6
Q ss_pred CCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CCc
Q psy8370 82 KTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NIK 150 (256)
Q Consensus 82 ~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~~ 150 (256)
++++|-.|++.|. ++..|++.|+ +|+.++.++..++.+.+.+...+.++ .++..|+.+...... .+.
T Consensus 4 ~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~~~~g~ 81 (264)
T 3tfo_A 4 DKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAGGTA-LAQVLDVTDRHSVAAFAQAAVDTWGR 81 (264)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCEE-EEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcE-EEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5678878877653 5566666777 89999999988887777776655556 777888876432110 136
Q ss_pred eeEEEechh
Q psy8370 151 YDVIWIQWV 159 (256)
Q Consensus 151 ~D~V~~~~~ 159 (256)
.|+++.+..
T Consensus 82 iD~lVnnAG 90 (264)
T 3tfo_A 82 IDVLVNNAG 90 (264)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 899998754
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=87.88 E-value=0.43 Score=38.71 Aligned_cols=96 Identities=14% Similarity=0.082 Sum_probs=56.6
Q ss_pred CCC-CCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc-cccccCCCCCCCceeE
Q psy8370 78 SDP-GKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GIQDFKPEDLNIKYDV 153 (256)
Q Consensus 78 ~~~-~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~-d~~~~~~~~~~~~~D~ 153 (256)
... ++.+||-+|+| .|..+..+++. |+ +|++++.+++-.+.+++. .+.. .++.. +........ +.+|+
T Consensus 176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~---lGa~--~vi~~~~~~~~~~~~--~g~D~ 247 (357)
T 2cf5_A 176 GLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQD---LGAD--DYVIGSDQAKMSELA--DSLDY 247 (357)
T ss_dssp STTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTT---SCCS--CEEETTCHHHHHHST--TTEEE
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHH---cCCc--eeeccccHHHHHHhc--CCCCE
Confidence 455 78999999975 35566666554 55 899999998766665522 2211 12211 111111111 25999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|+....-. ..++.+.+.|+++|.++...
T Consensus 248 vid~~g~~--------~~~~~~~~~l~~~G~iv~~G 275 (357)
T 2cf5_A 248 VIDTVPVH--------HALEPYLSLLKLDGKLILMG 275 (357)
T ss_dssp EEECCCSC--------CCSHHHHTTEEEEEEEEECS
T ss_pred EEECCCCh--------HHHHHHHHHhccCCEEEEeC
Confidence 98764321 12345678899999998863
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=87.83 E-value=4 Score=31.15 Aligned_cols=106 Identities=12% Similarity=0.051 Sum_probs=59.2
Q ss_pred CCCeEEEEcCC--CC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------
Q psy8370 81 GKTRVLDVGAG--IG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G--~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-------- 147 (256)
.++++|-.|++ .| .++..|++.|+ +|++++.++...+.+.+.....+ .+ .++..|+.+......
T Consensus 7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~-~~-~~~~~D~~~~~~v~~~~~~~~~~ 83 (261)
T 2wyu_A 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALG-GA-LLFRADVTQDEELDALFAGVKEA 83 (261)
T ss_dssp TTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHHHHHTT-CC-EEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-Cc-EEEECCCCCHHHHHHHHHHHHHH
Confidence 35788888876 33 24555666777 89999988752222322222222 35 778888876432110
Q ss_pred CCceeEEEechhhh----------ccCHHHHHH-----------HHHHHhhhcCCCcEEEEEe
Q psy8370 148 NIKYDVIWIQWVLM----------FILDEDIIK-----------FLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~----------~~~~~~~~~-----------~l~~~~~~LkpgG~l~i~~ 189 (256)
.+.+|+++.+.... ..+.+++.. +++.+.+.++++|.++...
T Consensus 84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 146 (261)
T 2wyu_A 84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLT 146 (261)
T ss_dssp HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 13689999875432 233333332 3344455555567777654
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=87.66 E-value=4.8 Score=31.25 Aligned_cols=84 Identities=17% Similarity=0.156 Sum_probs=52.1
Q ss_pred CeEEEEcC-CC-C-HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 83 TRVLDVGA-GI-G-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 83 ~~vLDiG~-G~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.+|.=||+ |. | .++..+...|. +|+++|.+++..+.+.+ .+ + .. .+..+. .. ..|+|+...
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~----~g--~-~~--~~~~~~---~~--~aDvVi~av- 75 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAPEGRDRLQG----MG--I-PL--TDGDGW---ID--EADVVVLAL- 75 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSHHHHHHHHH----TT--C-CC--CCSSGG---GG--TCSEEEECS-
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHh----cC--C-Cc--CCHHHH---hc--CCCEEEEcC-
Confidence 47889998 74 3 34455555666 89999999887665544 22 2 22 122211 12 579998763
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
++.....+++.+...++++..++
T Consensus 76 ----~~~~~~~v~~~l~~~l~~~~ivv 98 (286)
T 3c24_A 76 ----PDNIIEKVAEDIVPRVRPGTIVL 98 (286)
T ss_dssp ----CHHHHHHHHHHHGGGSCTTCEEE
T ss_pred ----CchHHHHHHHHHHHhCCCCCEEE
Confidence 33445667788888888776554
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=87.47 E-value=6.8 Score=29.90 Aligned_cols=90 Identities=12% Similarity=0.250 Sum_probs=54.0
Q ss_pred CCeEEEEcCCC-C-HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 82 KTRVLDVGAGI-G-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 82 ~~~vLDiG~G~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
+.+|.=||+|. | .++..+...+...|.++|.+++..+.+.+.+ .+ . ...+..+.. . ..|+|+...
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~-----g~-~-~~~~~~~~~---~--~~Dvvi~av- 76 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV-----EA-E-YTTDLAEVN---P--YAKLYIVSL- 76 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT-----TC-E-EESCGGGSC---S--CCSEEEECC-
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc-----CC-c-eeCCHHHHh---c--CCCEEEEec-
Confidence 35788899873 3 2445555567634899999988766554432 12 2 223333321 2 479988763
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
++.....+++.+...++++..++-.
T Consensus 77 ----~~~~~~~v~~~l~~~~~~~~ivv~~ 101 (266)
T 3d1l_A 77 ----KDSAFAELLQGIVEGKREEALMVHT 101 (266)
T ss_dssp ----CHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred ----CHHHHHHHHHHHHhhcCCCcEEEEC
Confidence 3333456777787778777655543
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.33 E-value=3.2 Score=32.19 Aligned_cols=77 Identities=12% Similarity=-0.046 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeC-CHHHHHHHHHHHHhc-CCCcceEEEccccccCCCCC--------
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQ-SSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~-s~~~~~~a~~~~~~~-~~~i~~~~~~d~~~~~~~~~-------- 147 (256)
.++++|-.|++.|. ++..|++.|+ +|+.++. ++...+...+.+... +.++ .++..|+.+......
T Consensus 24 ~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~~~ 101 (281)
T 3v2h_A 24 MTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTV-LHHPADMTKPSEIADMMAMVADR 101 (281)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCE-EEECCCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcE-EEEeCCCCCHHHHHHHHHHHHHH
Confidence 45788888877663 5566667787 8999998 666666655555443 3455 777888776432110
Q ss_pred CCceeEEEechh
Q psy8370 148 NIKYDVIWIQWV 159 (256)
Q Consensus 148 ~~~~D~V~~~~~ 159 (256)
.+.+|+++.+..
T Consensus 102 ~g~iD~lv~nAg 113 (281)
T 3v2h_A 102 FGGADILVNNAG 113 (281)
T ss_dssp TSSCSEEEECCC
T ss_pred CCCCCEEEECCC
Confidence 136899998754
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=87.29 E-value=1.9 Score=32.96 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=46.8
Q ss_pred CeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CCce
Q psy8370 83 TRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NIKY 151 (256)
Q Consensus 83 ~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~~~ 151 (256)
++||--|++.|. .+..+++.|+ +|+.+|.+++..+...+ ...+. ..+.+|+.+...... -+..
T Consensus 3 K~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~----~~~~~-~~~~~Dv~~~~~v~~~v~~~~~~~g~i 76 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAK----ERPNL-FYFHGDVADPLTLKKFVEYAMEKLQRI 76 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHT----TCTTE-EEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----hcCCE-EEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 678878887773 6677777787 89999999875543322 22345 677888876432111 2578
Q ss_pred eEEEech
Q psy8370 152 DVIWIQW 158 (256)
Q Consensus 152 D~V~~~~ 158 (256)
|+++.+.
T Consensus 77 DiLVNNA 83 (247)
T 3ged_A 77 DVLVNNA 83 (247)
T ss_dssp CEEEECC
T ss_pred CEEEECC
Confidence 9999774
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=87.25 E-value=2.9 Score=31.82 Aligned_cols=74 Identities=18% Similarity=0.040 Sum_probs=43.2
Q ss_pred CCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CCc
Q psy8370 82 KTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NIK 150 (256)
Q Consensus 82 ~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~~ 150 (256)
++++|-.|++.|. ++..|+++|+ +|++++.++. +...+.+...+.++ .++..|+.+...... .+.
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~--~~~~~~l~~~~~~~-~~~~~D~~~~~~v~~~~~~~~~~~g~ 79 (255)
T 2q2v_A 4 GKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDP--APALAEIARHGVKA-VHHPADLSDVAQIEALFALAEREFGG 79 (255)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCC--HHHHHHHHTTSCCE-EEECCCTTSHHHHHHHHHHHHHHHSS
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch--HHHHHHHHhcCCce-EEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 4677877765542 4455556677 8999988765 32333333333345 667778765432110 126
Q ss_pred eeEEEechh
Q psy8370 151 YDVIWIQWV 159 (256)
Q Consensus 151 ~D~V~~~~~ 159 (256)
+|+++.+..
T Consensus 80 id~lv~~Ag 88 (255)
T 2q2v_A 80 VDILVNNAG 88 (255)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 899998754
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.24 E-value=4 Score=31.81 Aligned_cols=78 Identities=19% Similarity=0.127 Sum_probs=52.4
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhc--CCCcceEEEccccccCCCC-------
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKD--CDKLDKCYNVGIQDFKPED------- 146 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~--~~~i~~~~~~d~~~~~~~~------- 146 (256)
.++++|-.|++.|. ++..+++.|.. .|+.++.+++.++.+.+.+... +.++ .++.+|+.+.....
T Consensus 32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~ 110 (287)
T 3rku_A 32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKV-HVAQLDITQAEKIKPFIENLP 110 (287)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEE-EEEECCTTCGGGHHHHHHTSC
T ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeE-EEEECCCCCHHHHHHHHHHHH
Confidence 36788888877663 45556666653 8999999988877777666543 2355 77888887653211
Q ss_pred -CCCceeEEEechh
Q psy8370 147 -LNIKYDVIWIQWV 159 (256)
Q Consensus 147 -~~~~~D~V~~~~~ 159 (256)
..+.+|+++.+..
T Consensus 111 ~~~g~iD~lVnnAG 124 (287)
T 3rku_A 111 QEFKDIDILVNNAG 124 (287)
T ss_dssp GGGCSCCEEEECCC
T ss_pred HhcCCCCEEEECCC
Confidence 0146899998754
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=87.04 E-value=2.2 Score=33.07 Aligned_cols=77 Identities=13% Similarity=0.014 Sum_probs=54.2
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|-.|++.|. ++..|++.|+ +|+.++.+++..+...+.+...+.++ .++.+|+.+...... .+
T Consensus 31 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dl~d~~~v~~~~~~~~~~~g 108 (276)
T 3r1i_A 31 SGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGGKA-LPIRCDVTQPDQVRGMLDQMTGELG 108 (276)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCCC-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeE-EEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46788888877663 5566667777 89999999887777777766655566 788889876532111 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 109 ~iD~lvnnAg 118 (276)
T 3r1i_A 109 GIDIAVCNAG 118 (276)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899998754
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=87.03 E-value=1.8 Score=32.97 Aligned_cols=78 Identities=12% Similarity=0.047 Sum_probs=51.1
Q ss_pred CCCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccc--cccCCCC-------
Q psy8370 80 PGKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGI--QDFKPED------- 146 (256)
Q Consensus 80 ~~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~--~~~~~~~------- 146 (256)
-.++++|=.|++.| .++..|++.|+ +|+.++.+++.++.+.+.+...+ .++ .++..|+ .+.....
T Consensus 10 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~ 87 (252)
T 3f1l_A 10 LNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQP-QWFILDLLTCTSENCQQLAQRIA 87 (252)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCC-EEEECCTTTCCHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCc-eEEEEecccCCHHHHHHHHHHHH
Confidence 34678888887766 35566667777 89999999887777666655433 245 7788887 3321100
Q ss_pred -CCCceeEEEechh
Q psy8370 147 -LNIKYDVIWIQWV 159 (256)
Q Consensus 147 -~~~~~D~V~~~~~ 159 (256)
..+..|+++.+..
T Consensus 88 ~~~g~id~lv~nAg 101 (252)
T 3f1l_A 88 VNYPRLDGVLHNAG 101 (252)
T ss_dssp HHCSCCSEEEECCC
T ss_pred HhCCCCCEEEECCc
Confidence 0246899998754
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=86.93 E-value=3.2 Score=31.49 Aligned_cols=77 Identities=6% Similarity=0.049 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.+++||=.|++.| .++..|+++|+ +|++++.++...+...+.+...+.++ .++..|+.+...... .+
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~ 89 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGHDV-SSVVMDVTNTESVQNAVRSVHEQEG 89 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCE-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCce-EEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4577887776554 24455556676 89999999876666555555444456 788888876432110 12
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+|+.+..
T Consensus 90 ~id~vi~~Ag 99 (260)
T 3awd_A 90 RVDILVACAG 99 (260)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899987754
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.91 E-value=3.2 Score=31.96 Aligned_cols=78 Identities=14% Similarity=-0.003 Sum_probs=51.0
Q ss_pred CCCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 80 PGKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 80 ~~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
-.+++||=.|++.| .++..|++.|+ +|++++.++...+...+.+...+.++ .++.+|+.+...... .
T Consensus 29 l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~-~~~~~Dl~~~~~v~~~~~~~~~~~ 106 (272)
T 1yb1_A 29 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKV-HTFVVDCSNREDIYSSAKKVKAEI 106 (272)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCE-EEEECCTTCHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcCCeE-EEEEeeCCCHHHHHHHHHHHHHHC
Confidence 34678887876654 24455556676 89999999887776666665544456 788888876431100 1
Q ss_pred CceeEEEechh
Q psy8370 149 IKYDVIWIQWV 159 (256)
Q Consensus 149 ~~~D~V~~~~~ 159 (256)
+.+|+|+.+..
T Consensus 107 g~iD~li~~Ag 117 (272)
T 1yb1_A 107 GDVSILVNNAG 117 (272)
T ss_dssp CCCSEEEECCC
T ss_pred CCCcEEEECCC
Confidence 36899998754
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=86.85 E-value=1.8 Score=32.99 Aligned_cols=74 Identities=11% Similarity=-0.007 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|-.|++.| .++..|+++|+ +|+.++.+++..+...+.+ +.++ .++..|+.+...... .+
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g 78 (254)
T 1hdc_A 4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATAREL---GDAA-RYQHLDVTIEEDWQRVVAYAREEFG 78 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT---GGGE-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCce-eEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3567888887655 25556666777 8999999886555443322 2244 667778765432110 12
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 79 ~iD~lv~nAg 88 (254)
T 1hdc_A 79 SVDGLVNNAG 88 (254)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899998754
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=86.84 E-value=1.5 Score=34.82 Aligned_cols=78 Identities=14% Similarity=0.049 Sum_probs=50.6
Q ss_pred CCCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCC----------HHHHHHHHHHHHhcCCCcceEEEccccccCCCC
Q psy8370 80 PGKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQS----------SKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 80 ~~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s----------~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~ 146 (256)
-.++++|-.|++.| .++..|++.|+ +|+.+|.+ ....+...+.+...+.++ .++.+|+.+.....
T Consensus 25 l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~ 102 (322)
T 3qlj_A 25 VDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEA-VADGSNVADWDQAA 102 (322)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEE-EEECCCTTSHHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCcccccccccccHHHHHHHHHHHHhcCCcE-EEEECCCCCHHHHH
Confidence 35678888887766 35566667777 89999886 555555555555554456 67788877643211
Q ss_pred C--------CCceeEEEechh
Q psy8370 147 L--------NIKYDVIWIQWV 159 (256)
Q Consensus 147 ~--------~~~~D~V~~~~~ 159 (256)
. .+.+|+++.+..
T Consensus 103 ~~~~~~~~~~g~iD~lv~nAg 123 (322)
T 3qlj_A 103 GLIQTAVETFGGLDVLVNNAG 123 (322)
T ss_dssp HHHHHHHHHHSCCCEEECCCC
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 0 136899997754
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=86.82 E-value=3 Score=32.05 Aligned_cols=77 Identities=14% Similarity=0.090 Sum_probs=49.4
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCC----CCCCce
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPE----DLNIKY 151 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~----~~~~~~ 151 (256)
.++++|-.|++.|. ++..+++.|+ +|+.++.+++..+...+.+.... ..+ .++..|+.+.... ...+..
T Consensus 9 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~g~i 86 (267)
T 3t4x_A 9 KGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAIL-QPVVADLGTEQGCQDVIEKYPKV 86 (267)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEE-EEEECCTTSHHHHHHHHHHCCCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceE-EEEecCCCCHHHHHHHHHhcCCC
Confidence 45778877776552 5566666777 89999999887776666555432 234 5677787654210 002368
Q ss_pred eEEEechh
Q psy8370 152 DVIWIQWV 159 (256)
Q Consensus 152 D~V~~~~~ 159 (256)
|+++.+..
T Consensus 87 d~lv~nAg 94 (267)
T 3t4x_A 87 DILINNLG 94 (267)
T ss_dssp SEEEECCC
T ss_pred CEEEECCC
Confidence 99998754
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=86.82 E-value=1.9 Score=33.03 Aligned_cols=77 Identities=12% Similarity=-0.017 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC---------C
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL---------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~---------~ 148 (256)
.+++||=.|++.| .++..|+++|+ +|++++.++...+...+.+...+.++ .++..|+.+...... .
T Consensus 13 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~ 90 (266)
T 1xq1_A 13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQV-TGSVCDASLRPEREKLMQTVSSMFG 90 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCE-EEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCee-EEEECCCCCHHHHHHHHHHHHHHhC
Confidence 3567887776544 24445556676 89999999877666655555444456 777888765421100 0
Q ss_pred CceeEEEechh
Q psy8370 149 IKYDVIWIQWV 159 (256)
Q Consensus 149 ~~~D~V~~~~~ 159 (256)
+.+|+|+.+..
T Consensus 91 ~~id~li~~Ag 101 (266)
T 1xq1_A 91 GKLDILINNLG 101 (266)
T ss_dssp TCCSEEEEECC
T ss_pred CCCcEEEECCC
Confidence 36899987754
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=86.80 E-value=2.5 Score=31.95 Aligned_cols=76 Identities=18% Similarity=0.077 Sum_probs=47.5
Q ss_pred CCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeC-CHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 82 KTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQ-SSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 82 ~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~-s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
++++|-.|++.|. ++..|++.|+ +|+.++. +++..+...+.+...+.++ .++.+|+.+...... .+
T Consensus 4 ~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~~~~g 81 (246)
T 3osu_A 4 TKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAEAVVEEIKAKGVDS-FAIQANVADADEVKAMIKEVVSQFG 81 (246)
T ss_dssp SCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTSCE-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcE-EEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4567767766552 5555666777 7888776 5555666665555555556 778888876432110 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 82 ~id~lv~nAg 91 (246)
T 3osu_A 82 SLDVLVNNAG 91 (246)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899998754
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=86.45 E-value=5 Score=31.76 Aligned_cols=95 Identities=14% Similarity=0.093 Sum_probs=54.0
Q ss_pred CCCCeEEEEcCCC-C-HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc-CCCcceE-----EEccccccCCCCCCCce
Q psy8370 80 PGKTRVLDVGAGI-G-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-CDKLDKC-----YNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 80 ~~~~~vLDiG~G~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~i~~~-----~~~d~~~~~~~~~~~~~ 151 (256)
....+|.=||+|. | .++..|++.|. +|+.+ .+++.++..++.-... .... .+ ...|... . ..+
T Consensus 17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~~~~~~~i~~~g~~~~~~~~-~~~~~~~~~~~~~~----~--~~~ 87 (318)
T 3hwr_A 17 FQGMKVAIMGAGAVGCYYGGMLARAGH-EVILI-ARPQHVQAIEATGLRLETQSF-DEQVKVSASSDPSA----V--QGA 87 (318)
T ss_dssp ---CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-CCHHHHHHHHHHCEEEECSSC-EEEECCEEESCGGG----G--TTC
T ss_pred ccCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE-EcHhHHHHHHhCCeEEEcCCC-cEEEeeeeeCCHHH----c--CCC
Confidence 3467899999984 2 35555655666 89999 8887776665431000 0001 11 0111111 1 258
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+|+..-- ......+++.+...++|+..++..
T Consensus 88 D~vilavk-----~~~~~~~l~~l~~~l~~~~~iv~~ 119 (318)
T 3hwr_A 88 DLVLFCVK-----STDTQSAALAMKPALAKSALVLSL 119 (318)
T ss_dssp SEEEECCC-----GGGHHHHHHHHTTTSCTTCEEEEE
T ss_pred CEEEEEcc-----cccHHHHHHHHHHhcCCCCEEEEe
Confidence 99887632 223457888899999988776654
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=86.34 E-value=3.7 Score=31.02 Aligned_cols=77 Identities=14% Similarity=0.115 Sum_probs=51.2
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|-.|++.| .++..|++.|+ +|+.++.+++.++...+.+...+.++ .++..|+.+...... .+
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~-~~~~~Dv~~~~~~~~~~~~~~~~~g 83 (247)
T 2jah_A 6 QGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGAKV-HVLELDVADRQGVDAAVASTVEALG 83 (247)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCE-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcE-EEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3567888887665 25566666777 89999999887776666655444456 778888876432110 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 84 ~id~lv~nAg 93 (247)
T 2jah_A 84 GLDILVNNAG 93 (247)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899998754
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.32 E-value=1.3 Score=33.71 Aligned_cols=79 Identities=13% Similarity=-0.071 Sum_probs=45.9
Q ss_pred CCCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEe-CCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC-------
Q psy8370 79 DPGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLE-QSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL------- 147 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD-~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~------- 147 (256)
..++++||=.|++.|. ++..|+++|+ +|+.++ .+....+...+.....+.++ .++..|+.+......
T Consensus 10 ~~~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~~ 87 (256)
T 3ezl_A 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGCGPNSPRRVKWLEDQKALGFDF-YASEGNVGDWDSTKQAFDKVKA 87 (256)
T ss_dssp ---CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEECTTCSSHHHHHHHHHHTTCCC-EEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCee-EEEecCCCCHHHHHHHHHHHHH
Confidence 3556788877776652 5566666777 787776 44443343334444444466 788888876432110
Q ss_pred -CCceeEEEechh
Q psy8370 148 -NIKYDVIWIQWV 159 (256)
Q Consensus 148 -~~~~D~V~~~~~ 159 (256)
.+.+|+++.+..
T Consensus 88 ~~g~id~lv~~Ag 100 (256)
T 3ezl_A 88 EVGEIDVLVNNAG 100 (256)
T ss_dssp HTCCEEEEEECCC
T ss_pred hcCCCCEEEECCC
Confidence 236899998754
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.22 E-value=1.7 Score=33.31 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=47.4
Q ss_pred CCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeC-CHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 82 KTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQ-SSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 82 ~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~-s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.+++|-.|++.|. ++..|++.|+ +|++++. ++...+...+.....+.++ .++..|+.+...... .+
T Consensus 7 ~k~vlVTGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~v~~~~~~~~~~~g 84 (264)
T 3i4f_A 7 VRHALITAGTKGLGKQVTEKLLAKGY-SVTVTYHSDTTAMETMKETYKDVEERL-QFVQADVTKKEDLHKIVEEAMSHFG 84 (264)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHTGGGGGGE-EEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred cCEEEEeCCCchhHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCce-EEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4678877776653 5566666777 7888754 4555555555544434456 788888876532111 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 85 ~id~lv~~Ag 94 (264)
T 3i4f_A 85 KIDFLINNAG 94 (264)
T ss_dssp CCCEEECCCC
T ss_pred CCCEEEECCc
Confidence 6899998755
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=86.19 E-value=2.8 Score=31.94 Aligned_cols=74 Identities=20% Similarity=0.126 Sum_probs=50.1
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|=.|++.| .++..|+++|+ +|+.++.++..++...+.. +.++ .++..|+.+...... .+
T Consensus 8 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g 82 (261)
T 3n74_A 8 EGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEI---GDAA-LAVAADISKEADVDAAVEAALSKFG 82 (261)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTE-EEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHh---CCce-EEEEecCCCHHHHHHHHHHHHHhcC
Confidence 4578888888766 36666777787 8999999988776665543 2345 778888876532110 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 83 ~id~li~~Ag 92 (261)
T 3n74_A 83 KVDILVNNAG 92 (261)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCc
Confidence 6899987754
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=86.03 E-value=2.9 Score=29.09 Aligned_cols=99 Identities=11% Similarity=0.108 Sum_probs=51.7
Q ss_pred CCCCCCeEEEEcCCC-CH-hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC--CCCCCceeE
Q psy8370 78 SDPGKTRVLDVGAGI-GR-ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP--EDLNIKYDV 153 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~--~~~~~~~D~ 153 (256)
...++.+|+=+|+|. |. ++..|...|. +|+++|.++...+.++. . ... ..+.+|..+... ......+|+
T Consensus 15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~---~--~g~-~~~~~d~~~~~~l~~~~~~~ad~ 87 (155)
T 2g1u_A 15 KKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNS---E--FSG-FTVVGDAAEFETLKECGMEKADM 87 (155)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCT---T--CCS-EEEESCTTSHHHHHTTTGGGCSE
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHh---c--CCC-cEEEecCCCHHHHHHcCcccCCE
Confidence 345678999999863 32 2333434465 89999999865443321 1 123 445555433210 110125898
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+...- .+.....+..+.+.+.+...++..
T Consensus 88 Vi~~~~-----~~~~~~~~~~~~~~~~~~~~iv~~ 117 (155)
T 2g1u_A 88 VFAFTN-----DDSTNFFISMNARYMFNVENVIAR 117 (155)
T ss_dssp EEECSS-----CHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred EEEEeC-----CcHHHHHHHHHHHHHCCCCeEEEE
Confidence 887632 122234444455555666666654
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=86.02 E-value=5.2 Score=31.05 Aligned_cols=93 Identities=13% Similarity=0.123 Sum_probs=56.5
Q ss_pred CeEEEEcCCC-C-HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-------------------CCcceEEEccccc
Q psy8370 83 TRVLDVGAGI-G-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-------------------DKLDKCYNVGIQD 141 (256)
Q Consensus 83 ~~vLDiG~G~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------------------~~i~~~~~~d~~~ 141 (256)
.+|.=||+|. | .++..++..|+ +|+++|.+++.++.+.+.+.... .++ . ...|..+
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i-~-~~~~~~~ 81 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGI-R-YSDDLAQ 81 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHC-E-EESCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCe-E-EeCCHHH
Confidence 5788888874 2 34555556677 89999999998888776642210 011 1 1223222
Q ss_pred cCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 142 FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 142 ~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
.. . ..|+|+....- . .+....+++++...++|+..++
T Consensus 82 ~~---~--~aDlVi~av~~-~--~~~~~~v~~~l~~~~~~~~il~ 118 (283)
T 4e12_A 82 AV---K--DADLVIEAVPE-S--LDLKRDIYTKLGELAPAKTIFA 118 (283)
T ss_dssp HT---T--TCSEEEECCCS-C--HHHHHHHHHHHHHHSCTTCEEE
T ss_pred Hh---c--cCCEEEEeccC-c--HHHHHHHHHHHHhhCCCCcEEE
Confidence 11 1 47998876321 1 1245568888999999877655
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=85.79 E-value=3.1 Score=32.09 Aligned_cols=77 Identities=13% Similarity=-0.047 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|-.|++.|. ++..|++.|+ +|++++.++...+...+.+...+.++ .++..|+.+...... .+
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (270)
T 3ftp_A 27 DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEG-RGAVLNVNDATAVDALVESTLKEFG 104 (270)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCC-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcE-EEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 45678877766552 5566667777 89999999888777776666555556 778888876432110 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+++.+..
T Consensus 105 ~iD~lvnnAg 114 (270)
T 3ftp_A 105 ALNVLVNNAG 114 (270)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6899998754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 256 | ||||
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 1e-43 | |
| d2ex4a1 | 222 | c.66.1.42 (A:2-224) Adrenal gland protein AD-003 ( | 6e-36 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 3e-10 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 3e-09 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 2e-08 | |
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 2e-08 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 3e-08 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 4e-08 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 1e-07 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 1e-06 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 1e-06 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 2e-06 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 2e-06 | |
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 3e-06 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 8e-06 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 1e-05 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 2e-05 | |
| d2esra1 | 152 | c.66.1.46 (A:28-179) Putative methyltransferase SP | 3e-05 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 4e-05 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 5e-05 | |
| d2bzga1 | 229 | c.66.1.36 (A:17-245) Thiopurine S-methyltransferas | 5e-05 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 8e-05 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 1e-04 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 3e-04 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 5e-04 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 8e-04 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 0.001 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 0.001 | |
| d2fcaa1 | 204 | c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr | 0.001 |
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 146 bits (368), Expect = 1e-43
Identities = 76/221 (34%), Positives = 112/221 (50%), Gaps = 9/221 (4%)
Query: 26 KDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRV 85
D + Y + EY+ VP T+ G+L G + D+DI+ S F+ G +R
Sbjct: 43 YDPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFI-----ASLPGHGTSRA 97
Query: 86 LDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE 145
LD GAGIGRI+K LL K + DLLE +E+AK E+ ++ P
Sbjct: 98 LDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPN 157
Query: 146 DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSS 205
YD+I IQW +++ D D +KF C+Q L NG I K+N ++G + D EDSS
Sbjct: 158 ----TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSS 213
Query: 206 VVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
+ RS + LF+++ ++ VK P LF + M+ALK
Sbjct: 214 LTRSDIHYKRLFNESGVRVVKEAFQEEWPTDLFPLKMYALK 254
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Score = 125 bits (314), Expect = 6e-36
Identities = 78/215 (36%), Positives = 117/215 (54%), Gaps = 3/215 (1%)
Query: 32 HYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAG 91
YS+ Y+ +PPT+DGML GY IS +DI +S +FL + + G + LD GAG
Sbjct: 11 FYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAG 70
Query: 92 IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKY 151
IGRI+K LL F ++D+++ + F+ QAK + ++ ++ + Y
Sbjct: 71 IGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFC--CGLQDFTPEPDSY 128
Query: 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLP 211
DVIWIQWV+ + D+ + +FL CK L NGII+IKDN+A DD DSSV R L
Sbjct: 129 DVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE-GVILDDVDSSVCRDLD 187
Query: 212 QFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
+ A L + E+ +P ++ +Y FAL+
Sbjct: 188 VVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR 222
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 56.1 bits (134), Expect = 3e-10
Identities = 33/173 (19%), Positives = 59/173 (34%), Gaps = 11/173 (6%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 139
PG R LD+G G GR S YL A +D + E I + ++
Sbjct: 31 PG--RTLDLGCGNGRNSLYLAANGYDVTA--WDKNPASMANLERIKAAEGLDNLQTDLVD 86
Query: 140 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII-----KDNVASG 194
+ + +YD I V+MF+ + I + ++ G +I +
Sbjct: 87 LNTLTF--DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCT 144
Query: 195 VKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALKP 247
V + ++ + R + +L ++ + G L M A K
Sbjct: 145 VGFPFAFKEGELRRYYEGWDMLKYNEDVGELHRTDENGNRIKLRFATMLARKT 197
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 53.2 bits (126), Expect = 3e-09
Identities = 15/133 (11%), Positives = 38/133 (28%), Gaps = 13/133 (9%)
Query: 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEI- 124
N+ L + PG RVL G + + L+ + E S +E+ E
Sbjct: 6 NKDLQQYWSSLNVVPGA-RVLVPLCGKSQDMSW-LSGQGYHVVGAELSEAAVERYFTERG 63
Query: 125 ----------LKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNL 174
K G + + ++ + + +++
Sbjct: 64 EQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQH 123
Query: 175 CKQILNKNGIIII 187
+ ++ + ++
Sbjct: 124 LEALMPQACSGLL 136
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 51.1 bits (121), Expect = 2e-08
Identities = 26/155 (16%), Positives = 58/155 (37%), Gaps = 14/155 (9%)
Query: 84 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 143
RVLD+GAG G + + + + ++ + + +E A + + + +
Sbjct: 19 RVLDIGAGAGHTALA-FSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP 77
Query: 144 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK------- 196
+ +D+I ++ D+ K + ++L ++G ++ D+ A
Sbjct: 78 FP--DDSFDIITCRYAAHHF--SDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVN 133
Query: 197 --NEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229
N D SL ++ +FS L +K
Sbjct: 134 HLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQK 168
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 50.9 bits (121), Expect = 2e-08
Identities = 31/177 (17%), Positives = 64/177 (36%), Gaps = 24/177 (13%)
Query: 63 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE 122
+ + G + ++DVG G GR + +++K+ K I
Sbjct: 63 DVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPL--------IKGINFDLP 114
Query: 123 EILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKN 182
+++++ L +VG F + D + ++ V DE I+FL+ C + L+ N
Sbjct: 115 QVIENAPPLSGIEHVGGDMFAS---VPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPN 171
Query: 183 GIIIIKDNVASGVKNEYDDED-------------SSVVRSLPQFCLLFSKANLKCVK 226
G +II + + N ++ R+ Q+ L + +
Sbjct: 172 GKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQ 228
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 51.2 bits (121), Expect = 3e-08
Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 14/178 (7%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 139
VLDVG G G + + + + + + ++ A+ + +
Sbjct: 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVV--- 135
Query: 140 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY 199
+ E L K D I + +VL+ D D ++ L C + L G I+I + +
Sbjct: 136 EGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN 195
Query: 200 DDEDS----------SVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALKP 247
+ +R+ ++ L + A L + ++ P + + + L P
Sbjct: 196 EQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPS-PTIPYDLSLLVLAP 252
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 50.4 bits (119), Expect = 4e-08
Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 6/112 (5%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 139
+ VLDV G G ++ A K+ + + ++ A+ + +
Sbjct: 15 GNE-EVLDVATGGGHVANA-FAPFVKKVVAFDLTEDILKVAR----AFIEGNGHQQVEYV 68
Query: 140 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191
Q + + + + F++ ++L K G +++ DN
Sbjct: 69 QGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS 120
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 48.8 bits (115), Expect = 1e-07
Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 5/110 (4%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 139
PG R+LD+G+G G + H ++ SS F QAK + + +
Sbjct: 33 PGT-RILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV--SERVHFIH 89
Query: 140 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189
D N K DV L Q L GI++I +
Sbjct: 90 NDAAGYVANEKCDVAACVGATWIA--GGFAGAEELLAQSLKPGGIMLIGE 137
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.1 bits (108), Expect = 1e-06
Identities = 30/177 (16%), Positives = 52/177 (29%), Gaps = 21/177 (11%)
Query: 47 IDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDK 106
DG + D ++ + G RVLDV G G S L +
Sbjct: 22 ADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIM-LVEEGFS 80
Query: 107 IDLLEQSSKFIEQAKEEILKDCDKLD------KCYNVGIQDFKPEDLNIKYDVIWIQWVL 160
+ ++ S K ++ A +E + + N D + VI +
Sbjct: 81 VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSF 140
Query: 161 MFILD-----EDIIKFLNLCKQILNKNGII---------IIKDNVASGVKNEYDDED 203
+ D + L ++ G++ I+ A KN Y D
Sbjct: 141 AHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSD 197
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 45.7 bits (107), Expect = 1e-06
Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 3/122 (2%)
Query: 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEIL 125
N F+ + + + G VLD+G G G + ++ + I A+
Sbjct: 10 NNFIKACLIRLYTKRGD-SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRAR 68
Query: 126 KDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNG 183
+ + + DL ++DVI Q+ + E + + L G
Sbjct: 69 NMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGG 128
Query: 184 II 185
Sbjct: 129 YF 130
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 45.5 bits (107), Expect = 2e-06
Identities = 33/208 (15%), Positives = 57/208 (27%), Gaps = 12/208 (5%)
Query: 22 TVAEKDGNRSHYSE-VTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSS-LYCQKKSD 79
TV K + E + NG D+ + K
Sbjct: 46 TVLRKGHIHGETRKPDYELLYGSDTVTVHVENGIKYKLDVAKIMFSPANVKERVRMAKVA 105
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 139
V+D+ AGIG +S + K+ +E+ + E I D+ +
Sbjct: 106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENI-HLNKVEDRM-SAYN 163
Query: 140 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY 199
D + D I + +F+ I II + V K
Sbjct: 164 MDNRDFPGENIADRI------LMGYVVRTHEFIPKALSIAKDGAIIHYHNTVPE--KLMP 215
Query: 200 DDEDSSVVRSLPQFCLLFSKANLKCVKS 227
+ + R ++ K N +K
Sbjct: 216 REPFETFKRITKEYGYDVEKLNELKIKR 243
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 45.6 bits (107), Expect = 2e-06
Identities = 24/129 (18%), Positives = 40/129 (31%), Gaps = 4/129 (3%)
Query: 61 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQA 120
D+ ++ ++S L ++D G G G + L+ + S A
Sbjct: 7 DLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLA 66
Query: 121 KEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILN 180
+ L D + G LN KYD+ L+ L +
Sbjct: 67 EARELFRLLPYDSEFLEGDATEIE--LNDKYDIAICHAFLLH--MTTPETMLQKMIHSVK 122
Query: 181 KNGIIIIKD 189
K G II +
Sbjct: 123 KGGKIICFE 131
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 45.1 bits (106), Expect = 3e-06
Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 27/192 (14%)
Query: 65 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEI 124
S +L G ++DVG G G +K + K I + ++
Sbjct: 64 SKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETF--------PKLKCIVFDRPQV 115
Query: 125 LKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQIL---NK 181
+++ + VG F D + ++++L D+D ++ L CK+ + K
Sbjct: 116 VENLSGSNNLTYVGGDMFTS---IPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGK 172
Query: 182 NGIIIIKDNVASGVKNEYDDEDSSVV------------RSLPQFCLLFSKANLKCVKSEK 229
G + I D V K+E ++ R+ ++ LF +A + K
Sbjct: 173 RGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISP 232
Query: 230 VTGMPKSLFKIY 241
+TG SL +IY
Sbjct: 233 LTG-FLSLIEIY 243
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 43.8 bits (102), Expect = 8e-06
Identities = 30/166 (18%), Positives = 50/166 (30%), Gaps = 14/166 (8%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 139
VLDVG G G + + + L + + E+A+ G
Sbjct: 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGD 139
Query: 140 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV------AS 193
+ DV+ + +VL+ DED + L C + L G +++ D A
Sbjct: 140 FFKPL---PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD 196
Query: 194 GVKNEYDD-----EDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMP 234
+ D VR+ + L A L
Sbjct: 197 RFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTT 242
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 1e-05
Identities = 26/148 (17%), Positives = 59/148 (39%), Gaps = 16/148 (10%)
Query: 54 YSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQS 113
+S+ + ++ L + + + ++L +G G G I +L+K + + +
Sbjct: 13 HSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCIN 72
Query: 114 SKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI--------------KYDVIWIQWV 159
++ +E + E+I K + + K N+ F K+D I + +
Sbjct: 73 NEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQM 132
Query: 160 LMFILDEDIIKFLNLCKQILNKNGIIII 187
L ++ +DI L +L N ++I
Sbjct: 133 LYYV--KDIPATLKFFHSLLGTNAKMLI 158
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 42.4 bits (98), Expect = 2e-05
Identities = 22/153 (14%), Positives = 54/153 (35%), Gaps = 11/153 (7%)
Query: 36 VTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRI 95
+ E Y+ + D + ++ F+ ++ + + RVLD+ G G
Sbjct: 1 MYELYTLLAEYYDTIYRRRIE----RVKAEIDFVEEIFKEDAKREVR-RVLDLACGTGIP 55
Query: 96 SKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155
+ L + ++ + L ++ ++ +V F ++D +
Sbjct: 56 TLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF-----KNEFDAVT 110
Query: 156 IQWVLMFILDE-DIIKFLNLCKQILNKNGIIII 187
+ + + DE D+ K + + L G+ I
Sbjct: 111 MFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Score = 40.6 bits (94), Expect = 3e-05
Identities = 16/104 (15%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 84 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 143
RVLD+ AG G ++ +++ L+E++ K ++ I+ + +
Sbjct: 17 RVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA 76
Query: 144 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
+ L ++D++++ I+ L +L++ +++
Sbjct: 77 IDCLTGRFDLVFLDPPYAKETIVATIEALAAKN-LLSEQVMVVC 119
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.7 bits (97), Expect = 4e-05
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 12/138 (8%)
Query: 50 MLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDL 109
ML D + + +S++ + K VLDVG+G G + + K+
Sbjct: 11 MLK--------DEVRTLTYRNSMFHNRHLFKDKV-VLDVGSGTGILCMFAAKAGARKVIG 61
Query: 110 LEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDE-DI 168
+E SS K D + +++ E K D+I +W+ + E +
Sbjct: 62 IECSSISDYAVKIVKANKLDHVVTIIKGKVEEV--ELPVEKVDIIISEWMGYCLFYESML 119
Query: 169 IKFLNLCKQILNKNGIII 186
L+ + L +G+I
Sbjct: 120 NTVLHARDKWLAPDGLIF 137
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (96), Expect = 5e-05
Identities = 31/212 (14%), Positives = 65/212 (30%), Gaps = 19/212 (8%)
Query: 54 YSSISDLDIQTS--------NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD 105
+SS I + +Y K VLDVG G G +S + AK
Sbjct: 1 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKV-VLDVGCGTGILSMF-AAKAGA 58
Query: 106 KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD 165
K L S+ + QA + I + + G + + +I + +
Sbjct: 59 KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFE 118
Query: 166 EDIIKFLNLCKQILNKNGIII---IKDNVASGVKNEYDDEDSSVVRSLPQFCL------L 216
+ L + L K G + ++ + + + + F + +
Sbjct: 119 SMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAV 178
Query: 217 FSKANLKCVKSEKVTGMPKSLFKIYMFALKPN 248
+A ++ + + + P + I +
Sbjct: 179 IPEAVVEVLDPKTLISEPCGIKHIDCHTTSIS 210
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 5e-05
Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 17/143 (11%)
Query: 61 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQA 120
+ +Q L RV G K+ A + +E S I++
Sbjct: 25 HQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKW-FADRGHSVVGVEISELGIQEF 83
Query: 121 KEEILKDCDKLDKCYNVGIQDFKPEDLNIKY----------------DVIWIQWVLMFIL 164
E + G + FK NI D+IW + L+ I
Sbjct: 84 FTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAIN 143
Query: 165 DEDIIKFLNLCKQILNKNGIIII 187
D + + +L K ++
Sbjct: 144 PGDRKCYADTMFSLLGKKFQYLL 166
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.0 bits (95), Expect = 8e-05
Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 11/144 (7%)
Query: 54 YSSISDLDIQTS--------NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD 105
+ S I + +++ K K VLDVG G G +S +
Sbjct: 4 FDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDK-IVLDVGCGTGILSMFAAKHGAK 62
Query: 106 KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD 165
+ ++ SS + L ++D K D+I +W+ F+L
Sbjct: 63 HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPF--PKVDIIISEWMGYFLLY 120
Query: 166 EDIIKFLNLCKQILNKNGIIIIKD 189
E ++ + + G +I D
Sbjct: 121 ESMMDTVLYARDHYLVEGGLIFPD 144
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 39.6 bits (91), Expect = 1e-04
Identities = 16/128 (12%), Positives = 35/128 (27%), Gaps = 3/128 (2%)
Query: 76 KKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY 135
+++ LD+ G G +++ L K + ++ E L
Sbjct: 32 VENNLVFDDYLDLACGTGNLTENLCPKFKNTWA---VDLSQEMLSEAENKFRSQGLKPRL 88
Query: 136 NVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV 195
+ + I +D+ K+ L + G+ I N +
Sbjct: 89 ACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKL 148
Query: 196 KNEYDDED 203
+ D
Sbjct: 149 SQVLGNND 156
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 3e-04
Identities = 20/187 (10%), Positives = 43/187 (22%), Gaps = 34/187 (18%)
Query: 76 KKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAK-------------- 121
++D+G+G F I L + + + E+ +
Sbjct: 46 GPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTP 105
Query: 122 ------------------EEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL--M 161
EE L+ K +V + + + D + +
Sbjct: 106 AVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECA 165
Query: 162 FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 221
+ L +L G ++ + E S V + A
Sbjct: 166 CCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAG 225
Query: 222 LKCVKSE 228
+
Sbjct: 226 FDIEQLL 232
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (88), Expect = 5e-04
Identities = 24/158 (15%), Positives = 57/158 (36%), Gaps = 8/158 (5%)
Query: 40 YSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYL 99
Y++ + + N ++ +TS ++ + + K +D+G+G+G++ +
Sbjct: 111 YNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDL-FVDLGSGVGQVVLQV 169
Query: 100 LAKHFDK----IDLLEQSSKFIEQAKEEILKDCDKL---DKCYNVGIQDFKPEDLNIKYD 152
A K ++ + +K+ E E K Y + DF E+ +
Sbjct: 170 AAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA 229
Query: 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190
+ +V F ++ L + + G I+
Sbjct: 230 NTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKP 267
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 37.2 bits (85), Expect = 8e-04
Identities = 28/182 (15%), Positives = 56/182 (30%), Gaps = 28/182 (15%)
Query: 77 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 136
+L++G+ G + L +HF+ I +E S + I +L
Sbjct: 16 TPFFRPGNLLELGSFKGDFTSR-LQEHFNDITCVEASEEAIS-------HAQGRLKDGIT 67
Query: 137 VGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLN-LCKQILNKNGIIII-------- 187
F+ L +YD I + VL I +D + L + L + G + +
Sbjct: 68 YIHSRFEDAQLPRRYDNIVLTHVLEHI--DDPVALLKRINDDWLAEGGRLFLVCPNANAV 125
Query: 188 -------KDNVASGVKNEYDDEDSSVVR--SLPQFCLLFSKANLKCVKSEKVTGMPKSLF 238
++ + +L S+A L+ + + F
Sbjct: 126 SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGIFFKALANF 185
Query: 239 KI 240
+
Sbjct: 186 QW 187
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 37.0 bits (84), Expect = 0.001
Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 14/150 (9%)
Query: 38 EYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISK 97
EYY P D Y S I+T L K + +VLD+ G+G S
Sbjct: 4 EYYRVFPTYTDINSQEYRS----RIETLEPLL------MKYMKKRGKVLDLACGVGGFSF 53
Query: 98 YLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157
L F+ + + + + ++ + + K + +D +
Sbjct: 54 LLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGD----ARKLSFEDKTFDYVIFI 109
Query: 158 WVLMFILDEDIIKFLNLCKQILNKNGIIII 187
++ ++ + +++L +G I+
Sbjct: 110 DSIVHFEPLELNQVFKEVRRVLKPSGKFIM 139
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.4 bits (86), Expect = 0.001
Identities = 27/171 (15%), Positives = 52/171 (30%), Gaps = 11/171 (6%)
Query: 51 LNGYSSISDLDI-QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-FDKID 108
L Y + S+ + FLS +Y Q + G T +D+G+G+G +
Sbjct: 186 LKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDT-FMDLGSGVGNCVVQAALECGCALSF 244
Query: 109 LLEQSSKFIEQAKEEI--------LKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 160
E + + L + +++ + + V
Sbjct: 245 GCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVN 304
Query: 161 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLP 211
F+ DED+ K + Q II ++ S ++ L
Sbjct: 305 NFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSLTYQINFYNVENIFNRLK 355
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Score = 36.4 bits (83), Expect = 0.001
Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 7/112 (6%)
Query: 84 RVLDVGAGIGRISKYLLAKHFDK-IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 142
++VG G G+ + ++ D +E I A +++ + K N+
Sbjct: 32 IHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL 91
Query: 143 KPEDLNIKYDVIWIQWVLMFIL------DEDIIKFLNLCKQILNKNGIIIIK 188
+ +++ + + FL ++++ K G I K
Sbjct: 92 TDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 143
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 256 | |||
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 100.0 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 100.0 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.93 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.92 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.92 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.92 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.9 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.9 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.89 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.89 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.88 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.88 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.88 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.87 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.87 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.87 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.87 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.87 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.86 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.86 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.86 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.84 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.84 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.84 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.84 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.83 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.8 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.8 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.77 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.77 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.74 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.74 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.72 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.71 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.69 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.65 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.62 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.62 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.62 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.61 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.61 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.61 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.61 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.6 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.59 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.59 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.58 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.58 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.58 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.57 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.54 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.53 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.52 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.51 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.51 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.51 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.45 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.45 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.42 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.41 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.36 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.32 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.3 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.3 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.28 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.27 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.27 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.24 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.23 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.18 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.17 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.16 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 99.15 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.14 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.13 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 99.01 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 99.01 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.99 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.96 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.93 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.93 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.91 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.9 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.89 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.87 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.86 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.81 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.74 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.62 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.55 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.48 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.47 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.4 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.4 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.21 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.17 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.16 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.06 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.93 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.73 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.68 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.66 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.55 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.36 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.18 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.17 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 97.12 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.05 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.0 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.89 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.82 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.72 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 96.68 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.55 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.55 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.55 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.5 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.43 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.38 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.35 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.28 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 96.28 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.2 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.17 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 96.1 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 96.03 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 96.0 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.98 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 95.91 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.44 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.36 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.3 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.29 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 95.26 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 95.22 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.11 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 95.08 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 95.07 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 95.06 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.88 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 94.8 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.79 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 94.52 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 94.49 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 94.45 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 94.43 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.41 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.41 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.39 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 94.24 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 93.7 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 93.61 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 93.44 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 93.43 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 93.34 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 93.29 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.23 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 93.12 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 92.89 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 92.79 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 92.72 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 92.58 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 92.55 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 92.53 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 92.37 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 91.97 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 91.79 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 91.61 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 91.56 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 91.45 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 91.42 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 91.4 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 91.29 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 91.25 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 91.15 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 91.13 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 90.83 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 90.79 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 90.61 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 90.4 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 90.2 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 90.2 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 90.12 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 90.09 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 90.04 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 90.01 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 89.64 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 88.92 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 88.69 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 88.38 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 88.28 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 87.93 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 87.44 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 87.15 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 87.03 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 86.86 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 86.61 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 86.3 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 84.61 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 83.69 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 83.17 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 81.42 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 81.17 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 81.17 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 81.13 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 81.09 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 81.05 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 80.9 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 80.42 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 80.22 |
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=100.00 E-value=4.2e-37 Score=240.23 Aligned_cols=211 Identities=37% Similarity=0.614 Sum_probs=184.2
Q ss_pred CCccchhhhhhhhccCCCCcccccccCCCCccccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCe
Q psy8370 27 DGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDK 106 (256)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~ 106 (256)
+....||+...+||+..+.+.++|+|+|...+..+......++..+. ..+..+|||+|||+|+++..++.+++.+
T Consensus 44 ~~~~~~Y~~~~~yW~~~~~t~~~mlgg~~~~~~~d~~~s~~fl~~l~-----~~~~~~vLD~GcG~G~~t~~ll~~~~~~ 118 (254)
T d1xtpa_ 44 DPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLP-----GHGTSRALDCGAGIGRITKNLLTKLYAT 118 (254)
T ss_dssp CTTTCHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHTST-----TCCCSEEEEETCTTTHHHHHTHHHHCSE
T ss_pred ccchhhhhchhhhhhcCchhcccccCCccccchhhHHHHHHHHhhCC-----CCCCCeEEEecccCChhhHHHHhhcCce
Confidence 34567999999999999999999999999888888877777776554 5678899999999999999988888779
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 107 IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 107 v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
|++||+|+.|++.|++++.... .+ .++++|+.++.+... +||+|++..+++|++++++.++++++++.|+|||.++
T Consensus 119 v~~vD~s~~~l~~a~~~~~~~~-~~-~~~~~d~~~~~~~~~--~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~ii 194 (254)
T d1xtpa_ 119 TDLLEPVKHMLEEAKRELAGMP-VG-KFILASMETATLPPN--TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIF 194 (254)
T ss_dssp EEEEESCHHHHHHHHHHTTTSS-EE-EEEESCGGGCCCCSS--CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEcCCHHHHHhhhccccccc-cc-eeEEccccccccCCC--ccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEE
Confidence 9999999999999998876432 45 889999999887666 8999999999999998888899999999999999999
Q ss_pred EEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCcceeeeEEEec
Q psy8370 187 IKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246 (256)
Q Consensus 187 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~l~ 246 (256)
+.++.............+.+.++.+++.++++++||++++...+..+|..+||+.+|+||
T Consensus 195 i~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~q~~fP~~l~~V~~~~l~ 254 (254)
T d1xtpa_ 195 FKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEEWPTDLFPLKMYALK 254 (254)
T ss_dssp EEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECTTCCTTSCCEEEEEEC
T ss_pred EEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEeeCCCCccceEEEEEEEC
Confidence 998776665555566677788999999999999999999999999999999999999986
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.7e-37 Score=234.62 Aligned_cols=217 Identities=39% Similarity=0.704 Sum_probs=185.5
Q ss_pred cCCccchhhhhhhhccCCCCcccccccCCCCccccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC
Q psy8370 26 KDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD 105 (256)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~ 105 (256)
.++...||+.+.+||+..+.+.++++++|...+..+......++.+.+.......++.+|||||||+|.++..++.+++.
T Consensus 5 ~~~~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~ 84 (222)
T d2ex4a1 5 IEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFR 84 (222)
T ss_dssp CSCHHHHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTTCS
T ss_pred cchHHHHHHHHHHHHhCCCccccccccCccccchhhHHHHHHHHHHHHHhccCCCCCCEEEEeccCCCHhhHHHHHhcCC
Confidence 56677899999999999999999999999888887877777888877744456677889999999999999998777777
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcE
Q psy8370 106 KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGI 184 (256)
Q Consensus 106 ~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 184 (256)
+|+|||+|+.|++.|++++...+ .++ .++++|+.++++..+ +||+|++..+++|++++++.++++++++.|+|||.
T Consensus 85 ~v~~vD~s~~~l~~ak~~~~~~~~~~~-~f~~~d~~~~~~~~~--~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~ 161 (222)
T d2ex4a1 85 EVDMVDITEDFLVQAKTYLGEEGKRVR-NYFCCGLQDFTPEPD--SYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGI 161 (222)
T ss_dssp EEEEEESCHHHHHHHHHHTGGGGGGEE-EEEECCGGGCCCCSS--CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEeecCHHHhhcccccccccccccc-ccccccccccccccc--cccccccccccccchhhhhhhHHHHHHHhcCCcce
Confidence 99999999999999999987654 345 899999999887665 89999999999999988888999999999999999
Q ss_pred EEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCcceeeeEEEec
Q psy8370 185 IIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246 (256)
Q Consensus 185 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~l~ 246 (256)
+++.++....... .......+.++.+++.++++++||++++.+.+..+|...|++++++||
T Consensus 162 ~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q~~fP~~~~~v~~~al~ 222 (222)
T d2ex4a1 162 IVIKDNMAQEGVI-LDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR 222 (222)
T ss_dssp EEEEEEEBSSSEE-EETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCSCCTTSCEEEEEEEC
T ss_pred EEEEEcccccccc-cccCCceeeCCHHHHHHHHHHcCCEEEEEEEeCCCCcchhEEEEEEeC
Confidence 9999876555433 444556677899999999999999999999999999999999999986
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.93 E-value=9.6e-26 Score=173.61 Aligned_cols=148 Identities=14% Similarity=0.197 Sum_probs=119.1
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeE
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
+..+..++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++....+ .++ .+.++|+.+++...+ +||+
T Consensus 9 ~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i-~~~~~d~~~l~~~~~--~fD~ 84 (231)
T d1vl5a_ 9 QIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQV-EYVQGDAEQMPFTDE--RFHI 84 (231)
T ss_dssp HHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSE-EEEECCC-CCCSCTT--CEEE
T ss_pred HhcCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhcccccccccc-ccccccccccccccc--cccc
Confidence 334688899999999999999999988876 89999999999999999987765 467 899999999886655 8999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc---------cccCCCCceeeCHHHHHHHHHhcCCcE
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---------EYDDEDSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
|++..+++|++ +..+++++++++|||||.+++.+........ ......+...++.+++.++++++||++
T Consensus 85 v~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 162 (231)
T d1vl5a_ 85 VTCRIAAHHFP--NPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFEL 162 (231)
T ss_dssp EEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEE
T ss_pred ccccccccccC--CHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEE
Confidence 99999999995 4568999999999999999998755433221 011122233467899999999999998
Q ss_pred EEee
Q psy8370 225 VKSE 228 (256)
Q Consensus 225 ~~~~ 228 (256)
++..
T Consensus 163 ~~~~ 166 (231)
T d1vl5a_ 163 EELH 166 (231)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.92 E-value=6.6e-24 Score=165.22 Aligned_cols=117 Identities=16% Similarity=0.320 Sum_probs=100.9
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~ 145 (256)
..++..++ ......++.+|||||||+|..+..+++.++ +|+|||+|+.|++.|+++....+.++ .+.++|+.+++++
T Consensus 27 ~~~~~~~~-~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i-~~~~~d~~~l~~~ 103 (251)
T d1wzna1 27 IDFVEEIF-KEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKI-EFLQGDVLEIAFK 103 (251)
T ss_dssp HHHHHHHH-HHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCC-EEEESCGGGCCCC
T ss_pred HHHHHHHH-HHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccccc-hheehhhhhcccc
Confidence 34566666 444566778999999999999999998887 89999999999999999988776678 9999999998765
Q ss_pred CCCCceeEEEec-hhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 146 DLNIKYDVIWIQ-WVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 146 ~~~~~~D~V~~~-~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+ .||+|+|. .+++|++.++..++|++++++|||||.+++.
T Consensus 104 -~--~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 104 -N--EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp -S--CEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -c--ccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3 69999986 6788888788889999999999999999985
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=2.2e-24 Score=166.20 Aligned_cols=146 Identities=17% Similarity=0.222 Sum_probs=118.9
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEE
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
.+.+++.+|||||||+|.++..+++.+. +|+|||+|+.|++.|+++....+ .++ .++++|+.+++.+.+ +||+|+
T Consensus 12 ~~~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~-~~~~~d~~~~~~~~~--~fD~v~ 87 (234)
T d1xxla_ 12 AECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENV-RFQQGTAESLPFPDD--SFDIIT 87 (234)
T ss_dssp HTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSE-EEEECBTTBCCSCTT--CEEEEE
T ss_pred hCCCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhcccccccc-ccccccccccccccc--ccceee
Confidence 3789999999999999999999988775 89999999999999999988765 456 899999999887666 899999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc---------cccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---------EYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
|..+++|++ +...+++++.++|||||.+++.+........ ......+....+..++..+++++||.+..
T Consensus 88 ~~~~l~~~~--d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~ 165 (234)
T d1xxla_ 88 CRYAAHHFS--DVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQD 165 (234)
T ss_dssp EESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEE
T ss_pred eeceeeccc--CHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCceeE
Confidence 999999995 4568999999999999999998655443221 01112223335788999999999998876
Q ss_pred ee
Q psy8370 227 SE 228 (256)
Q Consensus 227 ~~ 228 (256)
..
T Consensus 166 ~~ 167 (234)
T d1xxla_ 166 IQ 167 (234)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.92 E-value=8.4e-25 Score=173.17 Aligned_cols=150 Identities=21% Similarity=0.268 Sum_probs=120.0
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCcee
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
....++++.+|||||||+|.++..++++...+|+|+|+|+.+++.|+++....+ .++ .+.++|+.+++.+++ +||
T Consensus 61 ~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v-~~~~~d~~~l~~~~~--sfD 137 (282)
T d2o57a1 61 MTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNI-TVKYGSFLEIPCEDN--SYD 137 (282)
T ss_dssp HTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTE-EEEECCTTSCSSCTT--CEE
T ss_pred HhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccc-ccccccccccccccc--ccc
Confidence 555778899999999999999999987744489999999999999999988765 467 899999999887666 899
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcccc------CCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD------DEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
+|++..+++|++ +...++++++++|||||.+++.+........... ........+..++.++++++||+.+.
T Consensus 138 ~V~~~~~l~h~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~ 215 (282)
T d2o57a1 138 FIWSQDAFLHSP--DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLR 215 (282)
T ss_dssp EEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEE
T ss_pred hhhccchhhhcc--CHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEE
Confidence 999999999995 4568999999999999999998765543322100 00111224788999999999998876
Q ss_pred eee
Q psy8370 227 SEK 229 (256)
Q Consensus 227 ~~~ 229 (256)
...
T Consensus 216 ~~d 218 (282)
T d2o57a1 216 TFS 218 (282)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.90 E-value=5.1e-23 Score=159.68 Aligned_cols=139 Identities=17% Similarity=0.272 Sum_probs=106.6
Q ss_pred chhhhhhhhccCCCCcccccccCCCCccccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEE
Q psy8370 31 SHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLL 110 (256)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~v 110 (256)
++|+...++|+..... ..+......++.+.+ .. ...++.+|||||||+|.++..+++.+. +|+|+
T Consensus 1 ~~y~~~A~~YD~l~~~------------~~~y~~~~~~~~~~~-~~-~~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~Gv 65 (246)
T d1y8ca_ 1 NCYNKFAHIYDKLIRA------------DVDYKKWSDFIIEKC-VE-NNLVFDDYLDLACGTGNLTENLCPKFK-NTWAV 65 (246)
T ss_dssp CCHHHHHHHHHHHTTC------------SCCHHHHHHHHHHHH-HT-TTCCTTEEEEETCTTSTTHHHHGGGSS-EEEEE
T ss_pred CCHHHHHHHHHHHhcC------------CCCHHHHHHHHHHHH-HH-hCCCCCeEEEEeCcCCHHHHHHHHhCC-ccEee
Confidence 3567777777753221 112222334555555 22 234568999999999999999988887 89999
Q ss_pred eCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec-hhhhcc-CHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 111 EQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ-WVLMFI-LDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 111 D~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~-~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+|+.|++.|+++....+.++ .++++|+.++... . +||+|+|. .+++++ +.+++.++++++++.|+|||.|++.
T Consensus 66 D~S~~ml~~A~~~~~~~~~~v-~~~~~d~~~~~~~-~--~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 66 DLSQEMLSEAENKFRSQGLKP-RLACQDISNLNIN-R--KFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp CSCHHHHHHHHHHHHHTTCCC-EEECCCGGGCCCS-C--CEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccchhhhhhccccccccCccc-eeeccchhhhccc-c--cccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 999999999999988777778 9999999988653 3 79999986 577777 4578889999999999999999974
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.90 E-value=1.1e-23 Score=161.25 Aligned_cols=118 Identities=17% Similarity=0.223 Sum_probs=101.0
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~ 146 (256)
..+..++.+. .+++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++....+..+ .++..|+.+++...
T Consensus 25 ~~~~~~~~~~--l~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~~~-~~~~~d~~~l~~~~ 100 (226)
T d1ve3a1 25 ETLEPLLMKY--MKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNV-EFIVGDARKLSFED 100 (226)
T ss_dssp HHHHHHHHHS--CCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCC-EEEECCTTSCCSCT
T ss_pred HHHHHHHHHh--cCCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccccc-cccccccccccccC
Confidence 3444444222 35778999999999999999988776 89999999999999999988776667 88899999987766
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
. +||+|++..+++|+++.++.++++++.++|||||.+++...
T Consensus 101 ~--~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 101 K--TFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp T--CEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c--CceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 6 89999999999999888888999999999999999998754
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.89 E-value=3.3e-22 Score=156.94 Aligned_cols=192 Identities=14% Similarity=0.117 Sum_probs=138.4
Q ss_pred chhhhhhhhccCCCCcccccccCCCCccccchhhhH-HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEE
Q psy8370 31 SHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSN-QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDL 109 (256)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~ 109 (256)
.||+...++|...-........+|......+...+. +.++.++ +...+.++.+|||||||+|.++..+++....+|+|
T Consensus 2 aHYD~~~~fy~~~ld~~m~YS~~~~~~~~~tL~~AQ~~k~~~~~-~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~g 80 (280)
T d2fk8a1 2 AHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNL-DKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIG 80 (280)
T ss_dssp GGGCCCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHH-TTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEE
T ss_pred CCccCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHH-HHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEE
Confidence 467777777776444322222233333344555554 4566666 77789999999999999999999988774449999
Q ss_pred EeCCHHHHHHHHHHHHhcCC--CcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 110 LEQSSKFIEQAKEEILKDCD--KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 110 vD~s~~~~~~a~~~~~~~~~--~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
+|+|+.+++.|+++.+..+. .+ .+...|..+++ + +||.|++..+++|++......++++++++|||||.+++
T Consensus 81 i~ls~~q~~~a~~~~~~~~l~~~~-~~~~~d~~~~~---~--~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i 154 (280)
T d2fk8a1 81 LTLSKNQHARCEQVLASIDTNRSR-QVLLQGWEDFA---E--PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTV 154 (280)
T ss_dssp EESCHHHHHHHHHHHHTSCCSSCE-EEEESCGGGCC---C--CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred ecchHHHHHHHHHHHHhhccccch-hhhhhhhhhhc---c--chhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEE
Confidence 99999999999999987663 33 55666665542 3 79999999999999887788999999999999999999
Q ss_pred EecccCCCCc-------------------cccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 188 KDNVASGVKN-------------------EYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 188 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
.......... ......+....+..++.++++++||++...+.
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~l~~~~e~aGf~v~~~~~ 215 (280)
T d2fk8a1 155 QSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLS 215 (280)
T ss_dssp EEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCCCEE
T ss_pred EEeeccCcchhhhcccccccccccccchhhhhccCCCcccchHhhhhhHHhhccccceeee
Confidence 6533222110 00011222345789999999999999987653
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.4e-22 Score=157.13 Aligned_cols=148 Identities=19% Similarity=0.137 Sum_probs=117.0
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCcee
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
......++.+|||||||+|..+..+++....+|+|||+|+.|++.++++....+ .++ .+..+|+.++.+ ++ +||
T Consensus 27 ~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v-~~~~~d~~~~~~-~~--~fD 102 (245)
T d1nkva_ 27 RVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERV-HFIHNDAAGYVA-NE--KCD 102 (245)
T ss_dssp HHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTE-EEEESCCTTCCC-SS--CEE
T ss_pred HHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccc-hhhhhHHhhccc-cC--cee
Confidence 444788899999999999999999887643499999999999999999988765 457 999999998743 34 799
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc------cccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------EYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
+|++..+++|++ +...++++++++|||||.+++.+........ ...........+..++...++++||+++.
T Consensus 103 ~v~~~~~~~~~~--d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~~v~ 180 (245)
T d1nkva_ 103 VAACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVE 180 (245)
T ss_dssp EEEEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCE
T ss_pred EEEEEehhhccC--CHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcCCEEEE
Confidence 999999999995 4568999999999999999998754433221 11111222235788999999999998876
Q ss_pred ee
Q psy8370 227 SE 228 (256)
Q Consensus 227 ~~ 228 (256)
..
T Consensus 181 ~~ 182 (245)
T d1nkva_ 181 MV 182 (245)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.88 E-value=3.7e-22 Score=155.23 Aligned_cols=163 Identities=20% Similarity=0.281 Sum_probs=126.9
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
+..+..+|||||||+|.++..++++.+. +++++|+ +++++.++++....+ .++ .++.+|+.+..+ . +||+|
T Consensus 77 d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv-~~~~~D~~~~~~--~--~~D~v 150 (253)
T d1tw3a2 77 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRV-DVVEGDFFEPLP--R--KADAI 150 (253)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTE-EEEECCTTSCCS--S--CEEEE
T ss_pred CCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccch-hhccccchhhcc--c--chhhe
Confidence 5677789999999999999999888654 8999998 678999999988765 467 899999865332 3 69999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcccc----------CCCCceeeCHHHHHHHHHhcCCcE
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD----------DEDSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
++..++|++++++..++|+++++.|||||.+++.+........... .......++.+++.++++++||++
T Consensus 151 ~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~ 230 (253)
T d1tw3a2 151 ILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVV 230 (253)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEE
T ss_pred eeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeE
Confidence 9999999999888889999999999999999998754332211000 000122358999999999999999
Q ss_pred EEeeeecCCCCcceeeeEEEecc
Q psy8370 225 VKSEKVTGMPKSLFKIYMFALKP 247 (256)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~ 247 (256)
+++... ..|...|...+.+++|
T Consensus 231 ~~v~~~-~~p~~~~~~~li~~~P 252 (253)
T d1tw3a2 231 EEVRQL-PSPTIPYDLSLLVLAP 252 (253)
T ss_dssp EEEEEE-ECSSSSCEEEEEEEEE
T ss_pred EEEEEC-CCCCCCccEEEEEEec
Confidence 887643 3566778888877765
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.88 E-value=1.9e-21 Score=152.47 Aligned_cols=195 Identities=14% Similarity=0.142 Sum_probs=143.3
Q ss_pred CccchhhhhhhhccCCCCcccccccCCCCccccchhhhH-HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCe
Q psy8370 28 GNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSN-QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDK 106 (256)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~ 106 (256)
+...||+...++|............+|......+..++. +.+..+. +...+.++.+|||||||.|.++..+++....+
T Consensus 9 ~i~~HYD~~~~fy~~~Lg~~~~YS~g~~~~~~~tL~eAQ~~k~~~~~-~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~ 87 (285)
T d1kpga_ 9 NVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLAL-GKLGLQPGMTLLDVGCGWGATMMRAVEKYDVN 87 (285)
T ss_dssp HHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHH-TTTTCCTTCEEEEETCTTSHHHHHHHHHHCCE
T ss_pred HHHHhcCCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHH-HHcCCCCCCEEEEecCcchHHHHHHHhcCCcc
Confidence 345688888888888654432222344433445565665 4455555 77889999999999999999999987765459
Q ss_pred EEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcE
Q psy8370 107 IDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGI 184 (256)
Q Consensus 107 v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 184 (256)
|+|+++|+..++.++++....+ .++ .+...|..+++ . +||.|++..+++|+.......++++++++|||||.
T Consensus 88 v~git~s~~Q~~~a~~~~~~~g~~~~v-~~~~~d~~~~~---~--~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~ 161 (285)
T d1kpga_ 88 VVGLTLSKNQANHVQQLVANSENLRSK-RVLLAGWEQFD---E--PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGV 161 (285)
T ss_dssp EEEEESCHHHHHHHHHHHHTCCCCSCE-EEEESCGGGCC---C--CCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCE
T ss_pred eEEEeccHHHHHHHHHHHHhhhhhhhh-HHHHhhhhccc---c--cccceeeehhhhhcCchhHHHHHHHHHhhcCCCCc
Confidence 9999999999999999987765 456 78888887663 3 79999999999999766667899999999999999
Q ss_pred EEEEecccCCCCcc-------------------ccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 185 IIIKDNVASGVKNE-------------------YDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 185 l~i~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
+++........... .....+....+..++..+++++||++.+...
T Consensus 162 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~~~~~~e~agf~v~~~~~ 225 (285)
T d1kpga_ 162 MLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQS 225 (285)
T ss_dssp EEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEE
T ss_pred EEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhhHHHHHHHhchhhccccc
Confidence 99875432221100 0001122334788999999999999987754
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.88 E-value=8.4e-22 Score=155.00 Aligned_cols=195 Identities=15% Similarity=0.099 Sum_probs=138.4
Q ss_pred CccchhhhhhhhccCCCCcccccccCCCCccccchhhhHH-HHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCe
Q psy8370 28 GNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQ-FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDK 106 (256)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~ 106 (256)
....||+...++|...-.....+..+|......+..++.+ .++.+. +...+.++.+|||||||.|.++..+++....+
T Consensus 8 ~i~~HYD~~~~fy~~~Lg~~~~YS~~~~~~~~~tL~~Aq~~k~~~~~-~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~ 86 (291)
T d1kpia_ 8 AVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLAL-DKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVN 86 (291)
T ss_dssp HHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHH-HTTCCCTTCEEEEETCTTSHHHHHHHHHHCCE
T ss_pred HHHHhcCCCHHHHHHhcCCCCCeeeEEecCCCCCHHHHHHHHHHHHH-HhcCCCCCCEEEEecCcchHHHHHHHHhcCcc
Confidence 3456888777777663222212233333334445666654 455555 77789999999999999999999988765459
Q ss_pred EEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechhhhccCH-------HHHHHHHHHHhh
Q psy8370 107 IDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD-------EDIIKFLNLCKQ 177 (256)
Q Consensus 107 v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~-------~~~~~~l~~~~~ 177 (256)
|+|+++|+..++.++++....+ .++ .+...|... .++ +||.|++..+++|+++ .....+++++++
T Consensus 87 v~git~s~~q~~~a~~~~~~~~l~~~v-~~~~~d~~~---~~~--~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~ 160 (291)
T d1kpia_ 87 VIGLTLSENQYAHDKAMFDEVDSPRRK-EVRIQGWEE---FDE--PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYN 160 (291)
T ss_dssp EEEEESCHHHHHHHHHHHHHSCCSSCE-EEEECCGGG---CCC--CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHH
T ss_pred eeeccchHHHHHHHHHHHHhhccchhh-hhhhhcccc---ccc--ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999988765 234 555666532 233 8999999999999964 346789999999
Q ss_pred hcCCCcEEEEEecccCCCCcc-------------------ccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 178 ILNKNGIIIIKDNVASGVKNE-------------------YDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 178 ~LkpgG~l~i~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
+|||||.+++........... .....+....+..++..+++++||++.....
T Consensus 161 ~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~lps~~~~~~~~e~~gl~v~~~~~ 231 (291)
T d1kpia_ 161 LTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHR 231 (291)
T ss_dssp TSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred hCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCCCCCHHHHHhhhcccccccceeee
Confidence 999999999976543221100 0011223345889999999999999987754
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.87 E-value=1.6e-21 Score=146.23 Aligned_cols=140 Identities=17% Similarity=0.211 Sum_probs=109.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.++++|||||||+|..+..++++++ +|+|+|+|+.+++.++++....+ .++ .+...|+.++.+. . +||+|++..
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~d~~~~~~~-~--~fD~I~~~~ 103 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLDNL-QTDLVDLNTLTFD-G--EYDFILSTV 103 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTE-EEEECCTTTCCCC-C--CEEEEEEES
T ss_pred CCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccccch-hhhheeccccccc-c--cccEEEEee
Confidence 4567999999999999999999888 89999999999999999888765 345 8888998887763 3 799999999
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
+++|+++++..++++++++.|+|||.+++.......... ......+..+..++.+.+ .||+++...
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~--~~~~~~~~~~~~el~~~~--~~~~i~~~~ 169 (198)
T d2i6ga1 104 VMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFP--CTVGFPFAFKEGELRRYY--EGWDMLKYN 169 (198)
T ss_dssp CGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC-----------CCCCBCTTHHHHHT--TTSEEEEEE
T ss_pred eeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCC--CCCCCCCccCHHHHHHHh--CCCeEEEee
Confidence 999999888899999999999999999997654332221 112223445667777777 578887544
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2e-22 Score=154.53 Aligned_cols=143 Identities=17% Similarity=0.100 Sum_probs=114.9
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc------------------CCCcceEEEccc
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD------------------CDKLDKCYNVGI 139 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------~~~i~~~~~~d~ 139 (256)
...++.+|||+|||+|..+..|++.|+ +|+|||+|+.+++.++++.... +.++ .+.++|+
T Consensus 42 ~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~d~ 119 (229)
T d2bzga1 42 KGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNI-SLYCCSI 119 (229)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSE-EEEESCG
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcE-EEEEcch
Confidence 567889999999999999999999998 8999999999999998875421 1355 7899999
Q ss_pred cccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHh
Q psy8370 140 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 219 (256)
Q Consensus 140 ~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (256)
.++.+... +.||+|+...+++++++++...+++++.++|||||.+++......... .....+..+.+++.+++..
T Consensus 120 ~~l~~~~~-~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~----~~gpp~~~~~~el~~lf~~ 194 (229)
T d2bzga1 120 FDLPRTNI-GKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTK----HPGPPFYVPHAEIERLFGK 194 (229)
T ss_dssp GGGGGSCC-CCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTT----CCCSSCCCCHHHHHHHHTT
T ss_pred hhcccccc-CceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCC----CCCCCCCCCHHHHHHHhcC
Confidence 88865443 489999999999999998889999999999999999888755443321 1123456788999999964
Q ss_pred cCCcEEEee
Q psy8370 220 ANLKCVKSE 228 (256)
Q Consensus 220 ~gf~~~~~~ 228 (256)
+|.+...+
T Consensus 195 -~~~i~~le 202 (229)
T d2bzga1 195 -ICNIRCLE 202 (229)
T ss_dssp -TEEEEEEE
T ss_pred -CCEEEEEE
Confidence 67765544
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.87 E-value=4.2e-22 Score=152.39 Aligned_cols=146 Identities=16% Similarity=0.196 Sum_probs=111.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEccccccCCCCCCCceeEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH---FDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~--~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
+++.+|||+|||+|..+..+++.. ..+|+|+|+|+.|++.|+++....+. ++ .+..+|+.+.+. . .+|+|
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~-~~~~~d~~~~~~--~--~~d~i 112 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPV-EILCNDIRHVEI--K--NASMV 112 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCE-EEECSCTTTCCC--C--SEEEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchh-hhccchhhcccc--c--cceee
Confidence 678899999999999999987642 22899999999999999999876542 34 556667665543 3 68999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc----------------ccCCC----------Cceee
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE----------------YDDED----------SSVVR 208 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~----------------~~~~~----------~~~~~ 208 (256)
++..++++++.++..++++++++.|||||.+++.+......... ..... .....
T Consensus 113 ~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (225)
T d1im8a_ 113 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTD 192 (225)
T ss_dssp EEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCC
T ss_pred EEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCC
Confidence 99999999988888899999999999999999987554332210 00000 01124
Q ss_pred CHHHHHHHHHhcCCcEEEeeee
Q psy8370 209 SLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 209 ~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
+.+++..+++++||+.++...+
T Consensus 193 s~~~~~~~L~~aGF~~v~~~~~ 214 (225)
T d1im8a_ 193 SIETHKVRLKNVGFSQVELWFQ 214 (225)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEE
T ss_pred CHHHHHHHHHHcCCCceEEeee
Confidence 7889999999999998876543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.87 E-value=5.7e-22 Score=148.70 Aligned_cols=143 Identities=10% Similarity=0.029 Sum_probs=112.3
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-------------CCcceEEEccccccCC
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-------------DKLDKCYNVGIQDFKP 144 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------------~~i~~~~~~d~~~~~~ 144 (256)
..+++.+|||+|||+|..+..|+++|+ +|+|+|+|+.|++.|+++.+... ..+ .+..+|+.++.+
T Consensus 17 ~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~l~~ 94 (201)
T d1pjza_ 17 NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI-EIWCGDFFALTA 94 (201)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS-EEEEECCSSSTH
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccc-ceeccccccccc
Confidence 478899999999999999999999998 89999999999999999875421 234 678888877765
Q ss_pred CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcE
Q psy8370 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
... ..||+|++..++++++++.....++++++.|||||.+++.......... ....+..+.+++.+++. .+|++
T Consensus 95 ~~~-~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~----~~p~~~~~~~el~~l~~-~~~~i 168 (201)
T d1pjza_ 95 RDI-GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALL----EGPPFSVPQTWLHRVMS-GNWEV 168 (201)
T ss_dssp HHH-HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSS----SSCCCCCCHHHHHHTSC-SSEEE
T ss_pred ccc-cceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccC----CCccccCCHHHHHHHhC-CCcEE
Confidence 432 3799999999999999888899999999999999998886544333221 12234567888887774 57776
Q ss_pred EEee
Q psy8370 225 VKSE 228 (256)
Q Consensus 225 ~~~~ 228 (256)
...+
T Consensus 169 ~~~~ 172 (201)
T d1pjza_ 169 TKVG 172 (201)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5444
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=2.8e-22 Score=151.58 Aligned_cols=133 Identities=19% Similarity=0.180 Sum_probs=106.0
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhh
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 160 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l 160 (256)
++.+|||||||+|.++..+ .+++|+|+|+.+++.++++ ++ .+.++|+.+++.... +||+|++..++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~-----~~~~giD~s~~~~~~a~~~------~~-~~~~~d~~~l~~~~~--~fD~I~~~~~l 101 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPL-----KIKIGVEPSERMAEIARKR------GV-FVLKGTAENLPLKDE--SFDFALMVTTI 101 (208)
T ss_dssp CSSCEEEETCTTSTTHHHH-----TCCEEEESCHHHHHHHHHT------TC-EEEECBTTBCCSCTT--CEEEEEEESCG
T ss_pred CCCeEEEECCCCccccccc-----ceEEEEeCChhhccccccc------cc-ccccccccccccccc--ccccccccccc
Confidence 4568999999999998876 2579999999999998874 46 899999999887666 89999999999
Q ss_pred hccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc--------cccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 161 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN--------EYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
+|++ +..+++++++++|+|||.+++.......... ......+...++.+++.++++++||+.++...
T Consensus 102 ~h~~--d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 102 CFVD--DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp GGSS--CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred cccc--ccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 9995 4568999999999999999998754432110 01112233347899999999999999887654
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.86 E-value=9.9e-21 Score=147.08 Aligned_cols=109 Identities=16% Similarity=0.047 Sum_probs=92.2
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
..++.+|||||||+|..+..++..+..+|+|+|+|+.|++.|+++....+ .++ .+.++|+.......+ ++||+|+|
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v-~f~~~D~~~~~~~~~-~~fD~V~~ 99 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKV-FFRAQDSYGRHMDLG-KEFDVISS 99 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEE-EEEESCTTTSCCCCS-SCEEEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcce-EEEEcchhhhccccc-ccceEEEE
Confidence 36789999999999999999988887789999999999999999987654 346 789999876654322 37999999
Q ss_pred chhhhcc--CHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 157 QWVLMFI--LDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 157 ~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
..++||+ +.+++..+++++.++|||||.+++..
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~ 134 (252)
T d1ri5a_ 100 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 134 (252)
T ss_dssp ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence 9999987 44677889999999999999999863
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.86 E-value=1.1e-21 Score=149.90 Aligned_cols=139 Identities=19% Similarity=0.207 Sum_probs=108.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.++.+|||||||+|.++..++..+. +|+|+|+|+.+++.|+++.. .++ .+..+++.+..++ . +||+|++..+
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~---~~~-~~~~~~~~~~~~~-~--~fD~I~~~~v 90 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK---DGI-TYIHSRFEDAQLP-R--RYDNIVLTHV 90 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC---SCE-EEEESCGGGCCCS-S--CEEEEEEESC
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc---ccc-ccccccccccccc-c--ccccccccce
Confidence 4577899999999999999987776 89999999999999987753 256 8899999887653 4 7999999999
Q ss_pred hhccCHHHHHHHHHHHh-hhcCCCcEEEEEecccCCCCc----------ccc-------CCCCceeeCHHHHHHHHHhcC
Q psy8370 160 LMFILDEDIIKFLNLCK-QILNKNGIIIIKDNVASGVKN----------EYD-------DEDSSVVRSLPQFCLLFSKAN 221 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~-~~LkpgG~l~i~~~~~~~~~~----------~~~-------~~~~~~~~~~~~~~~~l~~~g 221 (256)
++|++ +...++++++ ++|+|||.+++..+....... ... ...+...++.+++.++++++|
T Consensus 91 leh~~--d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~G 168 (225)
T d2p7ia1 91 LEHID--DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAG 168 (225)
T ss_dssp GGGCS--SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTT
T ss_pred eEecC--CHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCC
Confidence 99995 4468899998 789999999998643222100 000 112233468999999999999
Q ss_pred CcEEEee
Q psy8370 222 LKCVKSE 228 (256)
Q Consensus 222 f~~~~~~ 228 (256)
|+++...
T Consensus 169 f~i~~~~ 175 (225)
T d2p7ia1 169 LQVTYRS 175 (225)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9988755
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=6.1e-22 Score=153.39 Aligned_cols=135 Identities=19% Similarity=0.323 Sum_probs=100.9
Q ss_pred cchhhhhhhhccCCCCcccccccCCCCccccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEE
Q psy8370 30 RSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDL 109 (256)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~ 109 (256)
..||+...+.|+....... .....+.+..++.+. ..++.+|||+|||+|.++..++..+. +|+|
T Consensus 6 ~~~yd~~a~~Yd~~~~~~~-------------~~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~g 69 (246)
T d2avna1 6 WEFYDRIARAYDSMYETPK-------------WKLYHRLIGSFLEEY--LKNPCRVLDLGGGTGKWSLFLQERGF-EVVL 69 (246)
T ss_dssp HHHHHHHHHHHGGGGCSHH-------------HHHHHHHHHHHHHHH--CCSCCEEEEETCTTCHHHHHHHTTTC-EEEE
T ss_pred HHHHHHHHHHHHHHhcccc-------------chHHHHHHHHHHHHh--cCCCCEEEEECCCCchhcccccccce-EEEE
Confidence 4677777777776433211 112223344433111 25678999999999999999988877 8999
Q ss_pred EeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec-hhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 110 LEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ-WVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 110 vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~-~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+|+|+.|++.|+++.. . .++.+|+.+++.+.+ +||+|++. .+++|+++ ..++++++.++|||||.+++.
T Consensus 70 iD~s~~~l~~a~~~~~-----~-~~~~~~~~~l~~~~~--~fD~ii~~~~~~~~~~d--~~~~l~~i~r~Lk~gG~~ii~ 139 (246)
T d2avna1 70 VDPSKEMLEVAREKGV-----K-NVVEAKAEDLPFPSG--AFEAVLALGDVLSYVEN--KDKAFSEIRRVLVPDGLLIAT 139 (246)
T ss_dssp EESCHHHHHHHHHHTC-----S-CEEECCTTSCCSCTT--CEEEEEECSSHHHHCSC--HHHHHHHHHHHEEEEEEEEEE
T ss_pred eecccccccccccccc-----c-ccccccccccccccc--cccceeeecchhhhhhh--HHHHHHHHHhhcCcCcEEEEE
Confidence 9999999999998632 2 567889998876655 89999985 68999954 457999999999999999997
Q ss_pred ec
Q psy8370 189 DN 190 (256)
Q Consensus 189 ~~ 190 (256)
.+
T Consensus 140 ~~ 141 (246)
T d2avna1 140 VD 141 (246)
T ss_dssp EE
T ss_pred EC
Confidence 53
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=3.5e-21 Score=150.14 Aligned_cols=151 Identities=11% Similarity=0.031 Sum_probs=108.1
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcc--------------------------
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLD-------------------------- 132 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~-------------------------- 132 (256)
..++.+|||||||+|..+..++..++.+|+|+|+|+.|++.|+++.........
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 456789999999999998877777766899999999999999998765432110
Q ss_pred ----eEEEccccc--cCCCCCCCceeEEEechhhhccCH--HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCC
Q psy8370 133 ----KCYNVGIQD--FKPEDLNIKYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDS 204 (256)
Q Consensus 133 ----~~~~~d~~~--~~~~~~~~~~D~V~~~~~l~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 204 (256)
.....+... .......++||+|++..+++|++. ++...++++++++|||||.+++.+...............
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~ 208 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 208 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccc
Confidence 011111111 111111348999999999999854 577889999999999999999987654433222222222
Q ss_pred ceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 205 SVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 205 ~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
...++.++++++++++||++++.+.
T Consensus 209 ~~~~~~~~~~~~l~~aGf~v~~~~~ 233 (257)
T d2a14a1 209 CVALEKGEVEQAVLDAGFDIEQLLH 233 (257)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 3346899999999999999887653
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=4.6e-21 Score=149.72 Aligned_cols=153 Identities=10% Similarity=0.130 Sum_probs=109.1
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCc--------------------------
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKL-------------------------- 131 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i-------------------------- 131 (256)
...++.+|||||||+|.++...+...+.+|+|+|+|+.|++.+++++.......
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 445688999999999988766666667799999999999999998775432111
Q ss_pred ----ceEEEccccccCC----CCCCCceeEEEechhhhccCH--HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccC
Q psy8370 132 ----DKCYNVGIQDFKP----EDLNIKYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDD 201 (256)
Q Consensus 132 ----~~~~~~d~~~~~~----~~~~~~~D~V~~~~~l~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~ 201 (256)
......|+....+ ....++||+|++.+++++++. ++..+++++++++|||||.|++...........-..
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~ 210 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEA 210 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTE
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCc
Confidence 1223445533221 111247999999999999863 578899999999999999999986544332211111
Q ss_pred CCCceeeCHHHHHHHHHhcCCcEEEeeee
Q psy8370 202 EDSSVVRSLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
....+.++.++++++++++||+++..+..
T Consensus 211 ~~~~~~~t~e~v~~~l~~aGf~v~~~~~~ 239 (263)
T d2g72a1 211 RLTVVPVSEEEVREALVRSGYKVRDLRTY 239 (263)
T ss_dssp EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccccCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 11223469999999999999999876543
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.84 E-value=4.5e-20 Score=143.26 Aligned_cols=150 Identities=19% Similarity=0.205 Sum_probs=115.8
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeE
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
.+..+..+|||||||+|.++..++++.+. +++++|+ +.+++.+++++...+ .++ .+..+|+.+.. .. .+|+
T Consensus 77 ~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri-~~~~~d~~~~~--p~--~~D~ 150 (256)
T d1qzza2 77 YDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRV-TVAEGDFFKPL--PV--TADV 150 (256)
T ss_dssp SCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTE-EEEECCTTSCC--SC--CEEE
T ss_pred CCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCccee-eeeeeeccccc--cc--cchh
Confidence 35667789999999999999999888655 8999998 788999999887655 456 88888876532 23 5999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcccc-----------CCCCceeeCHHHHHHHHHhcCC
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD-----------DEDSSVVRSLPQFCLLFSKANL 222 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~gf 222 (256)
|++.+++|++++++..++|+++++.|||||.+++.+........... .......+|.++|.++++++||
T Consensus 151 v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf 230 (256)
T d1qzza2 151 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGL 230 (256)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTE
T ss_pred hhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCC
Confidence 99999999999888889999999999999999998764332211000 0011234689999999999999
Q ss_pred cEEEeeeecC
Q psy8370 223 KCVKSEKVTG 232 (256)
Q Consensus 223 ~~~~~~~~~~ 232 (256)
++++......
T Consensus 231 ~~~~~~~~~~ 240 (256)
T d1qzza2 231 ALASERTSGS 240 (256)
T ss_dssp EEEEEEEECC
T ss_pred ceeEEEEeCC
Confidence 9998775443
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=1.4e-20 Score=145.07 Aligned_cols=126 Identities=12% Similarity=0.098 Sum_probs=102.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.++.+|||+|||+|.++..++..|. +|+|+|+|+.+++.|+++.+..+.++ .+..+|+.+..+ .+ +||+|+++..
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~~-~~~~~d~~~~~~-~~--~fD~V~ani~ 193 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRP-RFLEGSLEAALP-FG--PFDLLVANLY 193 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCC-EEEESCHHHHGG-GC--CEEEEEEECC
T ss_pred CccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCce-eEEecccccccc-cc--ccchhhhccc
Confidence 6789999999999999999887776 89999999999999999998877677 788888876533 23 7999999755
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeee
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
.+. +..+++.+.++|||||.++++... ....+++.+.++++||++++....
T Consensus 194 ~~~-----l~~l~~~~~~~LkpGG~lilSgil---------------~~~~~~v~~~~~~~Gf~~~~~~~~ 244 (254)
T d2nxca1 194 AEL-----HAALAPRYREALVPGGRALLTGIL---------------KDRAPLVREAMAGAGFRPLEEAAE 244 (254)
T ss_dssp HHH-----HHHHHHHHHHHEEEEEEEEEEEEE---------------GGGHHHHHHHHHHTTCEEEEEEEE
T ss_pred ccc-----HHHHHHHHHHhcCCCcEEEEEecc---------------hhhHHHHHHHHHHCCCEEEEEEEE
Confidence 443 457889999999999999986421 223578889999999999876643
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.83 E-value=1.1e-20 Score=148.89 Aligned_cols=118 Identities=16% Similarity=0.151 Sum_probs=96.5
Q ss_pred HHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC
Q psy8370 68 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~ 145 (256)
++..+........++.+|||||||+|.++..++.... .+|+|+|+|+.+++.|+++....+.++ .+.+.|+.+++..
T Consensus 14 ~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~-~f~~~d~~~~~~~ 92 (281)
T d2gh1a1 14 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDS-EFLEGDATEIELN 92 (281)
T ss_dssp HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEE-EEEESCTTTCCCS
T ss_pred HHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccc-ccccccccccccc
Confidence 3444442333567789999999999999999876532 389999999999999999988766667 8999999887653
Q ss_pred CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 146 DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 146 ~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
+ +||+|++..+++|+++ ...++++++++|||||.+++.++.
T Consensus 93 -~--~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 93 -D--KYDIAICHAFLLHMTT--PETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp -S--CEEEEEEESCGGGCSS--HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred -C--CceEEEEehhhhcCCC--HHHHHHHHHHHcCcCcEEEEEECC
Confidence 3 6999999999999954 458999999999999999998753
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.80 E-value=4.6e-19 Score=134.72 Aligned_cols=151 Identities=11% Similarity=0.011 Sum_probs=111.3
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeE
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
...++.++.+|||+|||+|..+..++..+.. .|+|+|+|+.|++.++++....+ ++ .++..|......... ..+|+
T Consensus 68 ~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~-ni-~~i~~d~~~~~~~~~-~~~~v 144 (230)
T d1g8sa_ 68 KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE-NI-IPILGDANKPQEYAN-IVEKV 144 (230)
T ss_dssp CCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT-TE-EEEECCTTCGGGGTT-TCCCE
T ss_pred HhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc-cc-ceEEEeeccCccccc-cccee
Confidence 3456889999999999999999999887543 89999999999999998866543 55 667777766554332 35777
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCC
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGM 233 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~ 233 (256)
+++...+++. ++...+++++++.|||||.++++......... .......++..+.|+++||++++...-..+
T Consensus 145 ~~i~~~~~~~--~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~------~~~~~~~~e~~~~L~~aGF~ive~idL~py 216 (230)
T d1g8sa_ 145 DVIYEDVAQP--NQAEILIKNAKWFLKKGGYGMIAIKARSIDVT------KDPKEIFKEQKEILEAGGFKIVDEVDIEPF 216 (230)
T ss_dssp EEEEECCCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSS------SCHHHHHHHHHHHHHHHTEEEEEEEECTTT
T ss_pred EEeeccccch--HHHHHHHHHHHHhcccCceEEEEeeccccCCC------CCHHHHHHHHHHHHHHcCCEEEEEecCCCC
Confidence 7776667777 45678999999999999999998654433221 111123467788999999999887655555
Q ss_pred CCc
Q psy8370 234 PKS 236 (256)
Q Consensus 234 ~~~ 236 (256)
..+
T Consensus 217 ~~~ 219 (230)
T d1g8sa_ 217 EKD 219 (230)
T ss_dssp STT
T ss_pred cCC
Confidence 444
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.2e-20 Score=144.33 Aligned_cols=145 Identities=12% Similarity=0.070 Sum_probs=100.2
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEe--
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI-- 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~-- 156 (256)
..++.+|||||||+|..+..+++.+..+++++|+|+.+++.|+++.......+ ..+..++.........++||.|+.
T Consensus 51 ~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~fD~i~fD~ 129 (229)
T d1zx0a1 51 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKV-IPLKGLWEDVAPTLPDGHFDGILYDT 129 (229)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEE-EEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred ccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccccc-ccccccccccccccccccccceeecc
Confidence 35688999999999999999987665689999999999999999987766556 667777655432222248999874
Q ss_pred ---chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 157 ---QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 157 ---~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
...++|+ .+...++++++++|||||.|++.+........ ............+.+...+.++||+....
T Consensus 130 ~~~~~~~~~~--~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~agF~~~~i 200 (229)
T d1zx0a1 130 YPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCNLTSWGELM-KSKYSDITIMFEETQVPALLEAGFRRENI 200 (229)
T ss_dssp CCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECCHHHHHHHT-TTTCSCHHHHHHHHTHHHHHHTTCCGGGE
T ss_pred cccccccccc--cCHHHHHHHHHHHcCCCcEEEEEecCCcchhh-hhhhhhcchhhhhHHHHHHHHCCCeeEEE
Confidence 4566666 56678999999999999999874322111100 00001111112345556778899976543
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.77 E-value=4.6e-18 Score=125.64 Aligned_cols=124 Identities=12% Similarity=0.128 Sum_probs=100.7
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
.+.++.+|||+|||+|.++..++..+ .+|+++|+++.+++.++++.+..+ .++ +++++|+.+...... .||.|+
T Consensus 30 ~~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v-~~~~gda~~~~~~~~--~~D~v~ 105 (186)
T d1l3ia_ 30 EPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNV-TLMEGDAPEALCKIP--DIDIAV 105 (186)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTE-EEEESCHHHHHTTSC--CEEEEE
T ss_pred CCCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcce-EEEECchhhcccccC--CcCEEE
Confidence 67899999999999999999987665 499999999999999999998876 467 899999988876655 899999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEE
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 225 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~ 225 (256)
+....+++ ..+++.+.+.|||||.+++..... .+...+...+...|+...
T Consensus 106 ~~~~~~~~-----~~~~~~~~~~LkpgG~lvi~~~~~---------------e~~~~~~~~l~~~~~~~~ 155 (186)
T d1l3ia_ 106 VGGSGGEL-----QEILRIIKDKLKPGGRIIVTAILL---------------ETKFEAMECLRDLGFDVN 155 (186)
T ss_dssp ESCCTTCH-----HHHHHHHHHTEEEEEEEEEEECBH---------------HHHHHHHHHHHHTTCCCE
T ss_pred EeCccccc-----hHHHHHHHHHhCcCCEEEEEeecc---------------ccHHHHHHHHHHcCCCeE
Confidence 98766554 468999999999999998853111 123556678888888543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.7e-18 Score=136.37 Aligned_cols=149 Identities=18% Similarity=0.246 Sum_probs=102.4
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhc------C-CeEEEEeCCHHHHHHHHHHHHhcC--CCc-ceEEEcccccc----C
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKH------F-DKIDLLEQSSKFIEQAKEEILKDC--DKL-DKCYNVGIQDF----K 143 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~------~-~~v~~vD~s~~~~~~a~~~~~~~~--~~i-~~~~~~d~~~~----~ 143 (256)
...+..+|||||||+|.++..++... . ..++|||+|+.|++.+++++.... ..+ ..+...++.+. .
T Consensus 37 ~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (280)
T d1jqea_ 37 DTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML 116 (280)
T ss_dssp TTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHT
T ss_pred cCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhc
Confidence 34455589999999999988776531 1 168999999999999999986543 111 02334443322 1
Q ss_pred CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc--------cccCCCCceeeCHHHHHH
Q psy8370 144 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN--------EYDDEDSSVVRSLPQFCL 215 (256)
Q Consensus 144 ~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 215 (256)
.....++||+|++..+++|++ +...++++++++|+|||.+++.......... .+.........+.+++.+
T Consensus 117 ~~~~~~~fD~I~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 194 (280)
T d1jqea_ 117 EKKELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQ 194 (280)
T ss_dssp TSSSCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHH
T ss_pred ccCCCCceeEEEEccceecCC--CHHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHHH
Confidence 111124899999999999995 4568999999999999999987543332110 111223334568899999
Q ss_pred HHHhcCCcEEEee
Q psy8370 216 LFSKANLKCVKSE 228 (256)
Q Consensus 216 ~l~~~gf~~~~~~ 228 (256)
++.+.||..+...
T Consensus 195 ~L~~~G~~~~~~~ 207 (280)
T d1jqea_ 195 MLDNLGLKYECYD 207 (280)
T ss_dssp HHHHHTCCEEEEE
T ss_pred HHHHCCCceEEEe
Confidence 9999999865433
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.74 E-value=1.7e-17 Score=123.47 Aligned_cols=105 Identities=21% Similarity=0.247 Sum_probs=86.7
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEccccccCCCCCCCceeEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC---DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
...++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.+++++...+ .++ .+..+|+.+.. .+. +||+|
T Consensus 49 ~~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i-~~~~~d~~~~~-~~~--~fD~I 123 (194)
T d1dusa_ 49 VVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDI-RVVHSDLYENV-KDR--KYNKI 123 (194)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCE-EEEECSTTTTC-TTS--CEEEE
T ss_pred CcCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceE-EEEEcchhhhh-ccC--CceEE
Confidence 57788999999999999999987655 499999999999999999987654 245 78888987643 334 79999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+++..+++.. +....+++++.+.|+|||.+++.
T Consensus 124 i~~~p~~~~~-~~~~~~l~~~~~~LkpgG~l~i~ 156 (194)
T d1dusa_ 124 ITNPPIRAGK-EVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp EECCCSTTCH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcccEEecc-hhhhhHHHHHHHhcCcCcEEEEE
Confidence 9988876652 34568999999999999999875
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.74 E-value=2.5e-17 Score=123.35 Aligned_cols=155 Identities=17% Similarity=0.086 Sum_probs=105.2
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC-CCceeE
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-NIKYDV 153 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-~~~~D~ 153 (256)
..++.++.+|||+|||+|..+..++.... .+|+|+|+|+.|++.++++.+..+ ++ .++..|......... ...+|+
T Consensus 51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~-ni-~~i~~d~~~~~~~~~~~~~vd~ 128 (209)
T d1nt2a_ 51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN-NI-IPLLFDASKPWKYSGIVEKVDL 128 (209)
T ss_dssp CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS-SE-EEECSCTTCGGGTTTTCCCEEE
T ss_pred cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC-Cc-eEEEeeccCccccccccceEEE
Confidence 35688999999999999999999987643 389999999999999999887754 66 888888877654333 124555
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCC
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGM 233 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~ 233 (256)
|+.. +.+. .+...++++++++|||||.+++........... . .....++..+.+ ++||++++...-..+
T Consensus 129 v~~~--~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~---~---~~~~~~~~~~~l-~~gf~i~E~i~L~P~ 197 (209)
T d1nt2a_ 129 IYQD--IAQK--NQIEILKANAEFFLKEKGEVVIMVKARSIDSTA---E---PEEVFKSVLKEM-EGDFKIVKHGSLMPY 197 (209)
T ss_dssp EEEC--CCST--THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTS---C---HHHHHHHHHHHH-HTTSEEEEEEECTTT
T ss_pred EEec--ccCh--hhHHHHHHHHHHHhccCCeEEEEEEccccCCCC---C---HHHHHHHHHHHH-HcCCEEEEEEccCCC
Confidence 5442 4444 355689999999999999999975332221110 0 000112222333 379999887665666
Q ss_pred CCcceeeeEE
Q psy8370 234 PKSLFKIYMF 243 (256)
Q Consensus 234 ~~~~~~~~~~ 243 (256)
..+++-+..+
T Consensus 198 ~~~H~~v~~~ 207 (209)
T d1nt2a_ 198 HRDHIFIHAY 207 (209)
T ss_dssp CTTEEEEEEE
T ss_pred ccCcEEEEEE
Confidence 6666655443
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=9.6e-18 Score=132.78 Aligned_cols=117 Identities=20% Similarity=0.260 Sum_probs=87.2
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCc----ceEEEccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKL----DKCYNVGIQD 141 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i----~~~~~~d~~~ 141 (256)
.+++...+ ...++.+|||+|||+|..+..|+++|+ +|+|+|+|+.|++.|+++....+... ..+...++..
T Consensus 45 ~~~l~~~l----~~~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (292)
T d1xvaa_ 45 KAWLLGLL----RQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 119 (292)
T ss_dssp HHHHHHHH----HHTTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred HHHHHHHh----hhcCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc
Confidence 34555555 234567999999999999999999887 89999999999999999876543211 0233444432
Q ss_pred cC---CCCCCCceeEEEec-hhhhccCH-----HHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 142 FK---PEDLNIKYDVIWIQ-WVLMFILD-----EDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 142 ~~---~~~~~~~~D~V~~~-~~l~~~~~-----~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.. +... +||+|++. .+++|++. ++...++++++++|||||.|++..
T Consensus 120 ~~~~~~~~~--~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 120 LDKDVPAGD--GFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp HHHHSCCTT--CEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccCCCC--CceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 21 2223 79999976 57888753 467889999999999999999853
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=3.9e-17 Score=127.45 Aligned_cols=97 Identities=18% Similarity=0.150 Sum_probs=82.7
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..++.+|||||||+|.++..+++.+.. +++|+|+|+.|++.|+++. .++ .+.++|+.+++..++ +||+|++.
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~----~~~-~~~~~d~~~l~~~~~--sfD~v~~~ 154 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----PQV-TFCVASSHRLPFSDT--SMDAIIRI 154 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----TTS-EEEECCTTSCSBCTT--CEEEEEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc----ccc-cceeeehhhccCCCC--CEEEEeec
Confidence 456789999999999999999887654 8999999999999998763 356 899999999987766 89999998
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
.+.+++ ++++|+|||||.++++.+.
T Consensus 155 ~~~~~~---------~e~~rvLkpgG~l~~~~p~ 179 (268)
T d1p91a_ 155 YAPCKA---------EELARVVKPGGWVITATPG 179 (268)
T ss_dssp SCCCCH---------HHHHHHEEEEEEEEEEEEC
T ss_pred CCHHHH---------HHHHHHhCCCcEEEEEeeC
Confidence 877664 5689999999999998653
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.69 E-value=1.5e-16 Score=119.65 Aligned_cols=109 Identities=19% Similarity=0.141 Sum_probs=88.9
Q ss_pred HHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCC
Q psy8370 68 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKP 144 (256)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~ 144 (256)
.+..++ +.....++.+|||||||+|..+..+++... ..|+++|+++.+++.+++++...+ .++ .+..+|..+..+
T Consensus 63 ~~a~~l-~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~-~~~~~d~~~~~~ 140 (213)
T d1dl5a1 63 LMALFM-EWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENV-IFVCGDGYYGVP 140 (213)
T ss_dssp HHHHHH-HHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSE-EEEESCGGGCCG
T ss_pred hhHHHH-HhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccccc-ccccCchHHccc
Confidence 344444 455789999999999999999999877542 289999999999999999998766 455 778889887766
Q ss_pred CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
... +||+|++..+++++++ .+.+.|||||.+++.
T Consensus 141 ~~~--~fD~I~~~~~~~~~p~--------~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 141 EFS--PYDVIFVTVGVDEVPE--------TWFTQLKEGGRVIVP 174 (213)
T ss_dssp GGC--CEEEEEECSBBSCCCH--------HHHHHEEEEEEEEEE
T ss_pred ccc--chhhhhhhccHHHhHH--------HHHHhcCCCcEEEEE
Confidence 655 8999999999998863 356789999999985
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.65 E-value=6.7e-16 Score=118.13 Aligned_cols=139 Identities=22% Similarity=0.213 Sum_probs=105.6
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.....+|||||||+|.++..++++.+. +++.+|+. ..++.+. ...++ ++..+|+.+..+ ..|++++.
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~~-----~~~ri-~~~~gd~~~~~p-----~~D~~~l~ 146 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP-QVIENAP-----PLSGI-EHVGGDMFASVP-----QGDAMILK 146 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTTCC-----CCTTE-EEEECCTTTCCC-----CEEEEEEE
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hhhhccC-----CCCCe-EEecCCcccccc-----cceEEEEe
Confidence 466789999999999999999888765 88999984 3332211 12567 889999865432 36999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcccc-------------CCCCceeeCHHHHHHHHHhcCCcE
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD-------------DEDSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
.++|++++++...+|+++++.|+|||.+++.+...+....... .......+|.++|.++++++||+.
T Consensus 147 ~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~ 226 (244)
T d1fp1d2 147 AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSK 226 (244)
T ss_dssp SSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSE
T ss_pred hhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999875443221000 001223468999999999999999
Q ss_pred EEeee
Q psy8370 225 VKSEK 229 (256)
Q Consensus 225 ~~~~~ 229 (256)
+++..
T Consensus 227 v~v~~ 231 (244)
T d1fp1d2 227 FQVAC 231 (244)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 88653
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.62 E-value=1.2e-15 Score=116.53 Aligned_cols=128 Identities=15% Similarity=0.235 Sum_probs=95.8
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHh-cC-CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCc
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIK 150 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~ 150 (256)
......++.+|||+|||+|.++..+++. +. .+|+++|.++++++.|++++.... .++ .+...|+.+..+. . .
T Consensus 79 ~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv-~~~~~Di~~~~~~-~--~ 154 (250)
T d1yb2a1 79 MRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNV-RTSRSDIADFISD-Q--M 154 (250)
T ss_dssp --CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTE-EEECSCTTTCCCS-C--C
T ss_pred HHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCce-EEEEeeeeccccc-c--e
Confidence 4457899999999999999999999875 33 389999999999999999998653 466 8899999877543 3 7
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
||.|++. +++ ...+++++.+.|||||.+++..+.. .....+...++++||..++..
T Consensus 155 fD~V~ld-----~p~--p~~~l~~~~~~LKpGG~lv~~~P~i---------------~Qv~~~~~~l~~~gf~~i~~~ 210 (250)
T d1yb2a1 155 YDAVIAD-----IPD--PWNHVQKIASMMKPGSVATFYLPNF---------------DQSEKTVLSLSASGMHHLETV 210 (250)
T ss_dssp EEEEEEC-----CSC--GGGSHHHHHHTEEEEEEEEEEESSH---------------HHHHHHHHHSGGGTEEEEEEE
T ss_pred eeeeeec-----CCc--hHHHHHHHHHhcCCCceEEEEeCCc---------------ChHHHHHHHHHHCCCceeEEE
Confidence 9999874 322 2368999999999999999842111 012345566677899766543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.62 E-value=8.7e-15 Score=110.40 Aligned_cols=150 Identities=13% Similarity=0.039 Sum_probs=99.4
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHh-cCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC-CCCCce
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE-DLNIKY 151 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~-~~~~~~ 151 (256)
....+.++.+|||+|||+|.++.+++.. |.. .|+++|+++.+++.++++.+..+ ++ ..+..|....... .....+
T Consensus 67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~-~~-~~i~~d~~~~~~~~~~~~~v 144 (227)
T d1g8aa_ 67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR-NI-VPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT-TE-EEEECCTTCGGGGTTTCCCE
T ss_pred cccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC-Cc-eEEEEECCCcccccccccce
Confidence 3456889999999999999999999876 332 89999999999999999876543 44 5666666543221 112378
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeec
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVT 231 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~ 231 (256)
|+|++. +.+. ++...+++++++.|||||.++++......... ..... -..++.+ +.+.||++++...-.
T Consensus 145 D~i~~d--~~~~--~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~---~~~~~---v~~~v~~-l~~~gf~iie~i~L~ 213 (227)
T d1g8aa_ 145 DVIFED--VAQP--TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVT---KEPEQ---VFREVER-ELSEYFEVIERLNLE 213 (227)
T ss_dssp EEEEEC--CCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTT---SCHHH---HHHHHHH-HHHTTSEEEEEEECT
T ss_pred EEEEEE--cccc--chHHHHHHHHHHhcccCCeEEEEEECCccCCC---CCHHH---HHHHHHH-HHHcCCEEEEEEcCC
Confidence 988774 3333 45567999999999999999987433222111 00000 0123333 345799998765544
Q ss_pred CCCCcc
Q psy8370 232 GMPKSL 237 (256)
Q Consensus 232 ~~~~~~ 237 (256)
.+..++
T Consensus 214 p~~~~H 219 (227)
T d1g8aa_ 214 PYEKDH 219 (227)
T ss_dssp TTSSSE
T ss_pred CCCCce
Confidence 444443
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.62 E-value=2.3e-15 Score=111.95 Aligned_cols=105 Identities=16% Similarity=0.224 Sum_probs=85.3
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccC--CCCCCCceeEEEe
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFK--PEDLNIKYDVIWI 156 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~--~~~~~~~~D~V~~ 156 (256)
++..|||||||+|..+..+++..+. .++|+|+++.++..+.++....+ .++ .++.+|+..+. ... +++|.|++
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv-~~~~~Da~~l~~~~~~--~~~d~v~i 105 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNV-KLLNIDADTLTDVFEP--GEVKRVYL 105 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSE-EEECCCGGGHHHHCCT--TSCCEEEE
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCc-hhcccchhhhhcccCc--hhhhcccc
Confidence 4568999999999999999888754 89999999999999999988776 467 99999988765 333 48999998
Q ss_pred chhhhccCHHH------HHHHHHHHhhhcCCCcEEEEE
Q psy8370 157 QWVLMFILDED------IIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 157 ~~~l~~~~~~~------~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.+...+..... ...+++.++++|||||.|.+.
T Consensus 106 ~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~ 143 (204)
T d2fcaa1 106 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 143 (204)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred ccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 87665543211 146999999999999999985
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.61 E-value=2.3e-15 Score=113.24 Aligned_cols=101 Identities=19% Similarity=0.143 Sum_probs=84.0
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEE
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
+.....++.+|||||||+|+++..++..+. +|+++|+++.+.+.|++++... .++ .+..+|.....+... +||.|
T Consensus 64 ~~L~l~~g~~VLdIG~GsGy~ta~La~l~~-~V~aiE~~~~~~~~A~~~~~~~-~nv-~~~~~d~~~g~~~~~--pfD~I 138 (224)
T d1vbfa_ 64 DELDLHKGQKVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNYASKLLSYY-NNI-KLILGDGTLGYEEEK--PYDRV 138 (224)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTC-SSE-EEEESCGGGCCGGGC--CEEEE
T ss_pred HHhhhcccceEEEecCCCCHHHHHHHHHhc-ccccccccHHHHHHHHHHHhcc-ccc-ccccCchhhcchhhh--hHHHH
Confidence 444688999999999999999998877654 9999999999999999987654 367 889999876555545 89999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
++.....+++. .+.+.|+|||++++.
T Consensus 139 iv~~a~~~ip~--------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 139 VVWATAPTLLC--------KPYEQLKEGGIMILP 164 (224)
T ss_dssp EESSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred HhhcchhhhhH--------HHHHhcCCCCEEEEE
Confidence 99988888863 245789999999985
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.5e-15 Score=119.67 Aligned_cols=106 Identities=24% Similarity=0.236 Sum_probs=85.1
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...++++|||||||+|.++..+++.|+.+|+++|.|+.+... ++.....+ .++ .++.+|+.++..... +||+|+
T Consensus 32 ~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a-~~~~~~~~~~~~i-~~~~~~~~~l~~~~~--~~D~Iv 107 (311)
T d2fyta1 32 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQA-MDIIRLNKLEDTI-TLIKGKIEEVHLPVE--KVDVII 107 (311)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHH-HHHHHHTTCTTTE-EEEESCTTTSCCSCS--CEEEEE
T ss_pred ccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHH-HHHHHHhCCCccc-eEEEeeHHHhcCccc--cceEEE
Confidence 456789999999999999999998898899999999988654 44444333 456 899999999877655 899999
Q ss_pred echhhhccCH-HHHHHHHHHHhhhcCCCcEEEE
Q psy8370 156 IQWVLMFILD-EDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 156 ~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i 187 (256)
+..+.+++.. ..+..++....+.|+|||.++-
T Consensus 108 se~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 108 SEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp ECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred EeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 9877766644 3566788888899999999874
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=7.9e-16 Score=123.43 Aligned_cols=104 Identities=27% Similarity=0.306 Sum_probs=86.3
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
..++++|||||||+|.++..+++.|+.+|+++|.|+ +++.+++.....+ .++ .++.+++.++..+.. +||+|++
T Consensus 36 ~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i-~~i~~~~~~l~~~~~--~~D~i~s 111 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKI-TLLRGKLEDVHLPFP--KVDIIIS 111 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTE-EEEESCTTTSCCSSS--CEEEEEE
T ss_pred cCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccc-eEEEeehhhccCccc--ceeEEEE
Confidence 356889999999999999999888988999999986 6678888777655 456 889999998876655 8999999
Q ss_pred chhhhccCH-HHHHHHHHHHhhhcCCCcEEE
Q psy8370 157 QWVLMFILD-EDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 157 ~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~ 186 (256)
..+.+++.. .....++..+.+.|||||.++
T Consensus 112 e~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 112 EWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 877666644 456678889999999999886
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.7e-15 Score=113.35 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=83.3
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhcC------CCcceEEEccccccCCCCCCC
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKH-F-DKIDLLEQSSKFIEQAKEEILKDC------DKLDKCYNVGIQDFKPEDLNI 149 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~------~~i~~~~~~d~~~~~~~~~~~ 149 (256)
...++.+|||||||+|+.+..++... . .+|+++|+++++++.|++++...+ .++ .+..+|.....+...
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~-~~~~gD~~~~~~~~~-- 149 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRV-QLVVGDGRMGYAEEA-- 149 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSE-EEEESCGGGCCGGGC--
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccce-EEEEeecccccchhh--
Confidence 56788999999999999998887653 2 289999999999999999987543 345 788899887776665
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+||+|++..++++++. .+.+.|||||.+++..
T Consensus 150 ~fD~I~~~~~~~~ip~--------~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 150 PYDAIHVGAAAPVVPQ--------ALIDQLKPGGRLILPV 181 (224)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred hhhhhhhhcchhhcCH--------HHHhhcCCCcEEEEEE
Confidence 8999999999988863 3678899999999853
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=1.3e-15 Score=121.56 Aligned_cols=104 Identities=19% Similarity=0.209 Sum_probs=85.0
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.++++|||||||+|.++..+++.|+.+|+++|.|+.+ ..+++.....+ .++ .++.+|+.++..+.. +||+|++.
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v-~~~~~~~~~~~~~~~--~~D~ivs~ 107 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHVV-TIIKGKVEEVELPVE--KVDIIISE 107 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTCTTTE-EEEESCTTTCCCSSS--CEEEEEEC
T ss_pred CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCCcccc-ceEeccHHHcccccc--eeEEEeee
Confidence 4678999999999999999988888799999999865 55666555443 456 899999999877666 89999998
Q ss_pred hhhhccCH-HHHHHHHHHHhhhcCCCcEEEE
Q psy8370 158 WVLMFILD-EDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 158 ~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i 187 (256)
.+.+++.. ..+..++..+.+.|||||.++-
T Consensus 108 ~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 108 WMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp CCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 77666643 3567899999999999999874
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.59 E-value=4.2e-15 Score=114.24 Aligned_cols=104 Identities=20% Similarity=0.235 Sum_probs=85.8
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHh-cCC-eEEEEeCCHHHHHHHHHHHHhc----CCCcceEEEccccccCCCCCC
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLN 148 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~----~~~i~~~~~~d~~~~~~~~~~ 148 (256)
......++.+|||+|||+|.++..|+.. +.. +|+++|+++++++.|+++++.. ..++ .+...|+.+...++.
T Consensus 90 ~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv-~~~~~d~~~~~~~~~- 167 (264)
T d1i9ga_ 90 HEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNW-RLVVSDLADSELPDG- 167 (264)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTE-EEECSCGGGCCCCTT-
T ss_pred HHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceE-EEEecccccccccCC-
Confidence 3447899999999999999999999876 333 8999999999999999998753 1466 889999988766655
Q ss_pred CceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 149 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+||.|++ +++++ ..+++++.++|||||.+++.
T Consensus 168 -~fDaV~l-----dlp~P--~~~l~~~~~~LkpGG~lv~~ 199 (264)
T d1i9ga_ 168 -SVDRAVL-----DMLAP--WEVLDAVSRLLVAGGVLMVY 199 (264)
T ss_dssp -CEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEE
T ss_pred -CcceEEE-----ecCCH--HHHHHHHHhccCCCCEEEEE
Confidence 8999986 35433 37899999999999999885
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=3.4e-15 Score=119.43 Aligned_cols=120 Identities=11% Similarity=0.080 Sum_probs=91.0
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhc----------CCCcceEE
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKD----------CDKLDKCY 135 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~----------~~~i~~~~ 135 (256)
.++.+++ +.....++.+|||||||+|..+..++.. ++.+++|+|+++.+++.|++..... ..++ .++
T Consensus 138 ~~~~~~~-~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i-~~~ 215 (328)
T d1nw3a_ 138 DLVAQMI-DEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY-TLE 215 (328)
T ss_dssp HHHHHHH-HHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCE-EEE
T ss_pred HHHHHHH-HHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCce-EEE
Confidence 4555555 5567889999999999999999998765 4558999999999999998875431 1356 899
Q ss_pred EccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 136 NVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 136 ~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
++|+.+.+..+....+|+|+++. +.+. +++...++++.+.|||||.+++....
T Consensus 216 ~gd~~~~~~~~~~~~advi~~~~-~~f~--~~~~~~l~e~~r~LKpGg~iv~~~~~ 268 (328)
T d1nw3a_ 216 RGDFLSEEWRERIANTSVIFVNN-FAFG--PEVDHQLKERFANMKEGGRIVSSKPF 268 (328)
T ss_dssp ECCTTSHHHHHHHHHCSEEEECC-TTTC--HHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred ECcccccccccccCcceEEEEcc-eecc--hHHHHHHHHHHHhCCCCcEEEEeccc
Confidence 99998876543311247777754 4455 56678999999999999999986543
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=3.9e-14 Score=109.47 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=98.7
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..+.+|||+|||+|..+..++..... +|+++|+|+.+++.|+++....+. ++ .++.+|+.+..+. . +||+|+++
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v-~~~~~d~~~~~~~-~--~fDlIvsN 182 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNI-HILQSDWFSALAG-Q--QFAMIVSN 182 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSE-EEECCSTTGGGTT-C--CEEEEEEC
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccc-eeeecccccccCC-C--ceeEEEec
Confidence 45688999999999999999877644 999999999999999999988774 57 8999998765432 3 79999997
Q ss_pred --h-----------hhhccCH----------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHH
Q psy8370 158 --W-----------VLMFILD----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFC 214 (256)
Q Consensus 158 --~-----------~l~~~~~----------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (256)
+ +..+-|. ....++++.+.+.|+|||.+++.- .. ...+.+.
T Consensus 183 PPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi----------g~------~q~~~v~ 246 (274)
T d2b3ta1 183 PPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH----------GW------QQGEAVR 246 (274)
T ss_dssp CCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC----------CS------SCHHHHH
T ss_pred chhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE----------Cc------hHHHHHH
Confidence 1 1111111 235678999999999999999841 10 1236788
Q ss_pred HHHHhcCCcEEEee
Q psy8370 215 LLFSKANLKCVKSE 228 (256)
Q Consensus 215 ~~l~~~gf~~~~~~ 228 (256)
+++++.||..++..
T Consensus 247 ~~l~~~gf~~i~~~ 260 (274)
T d2b3ta1 247 QAFILAGYHDVETC 260 (274)
T ss_dssp HHHHHTTCTTCCEE
T ss_pred HHHHHCCCCeEEEE
Confidence 99999999765443
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.58 E-value=7.9e-15 Score=113.37 Aligned_cols=129 Identities=14% Similarity=0.160 Sum_probs=95.6
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCc
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKH-F-DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIK 150 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~ 150 (256)
...+..++.+|||+|||+|.++..+++.. . .+|+++|+++++++.|+++++..+ .++ .+...|+...... ..
T Consensus 97 ~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v-~~~~~d~~~~~~~---~~ 172 (266)
T d1o54a_ 97 MMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERV-TIKVRDISEGFDE---KD 172 (266)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGE-EEECCCGGGCCSC---CS
T ss_pred HhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCc-EEEeccccccccc---cc
Confidence 34478999999999999999999998763 2 289999999999999999998765 244 6667776443322 26
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
+|.|+. ++++ ...+++++.++|||||.+++..+.. ...+.+.+.+++.||..++..+
T Consensus 173 ~D~V~~-----d~p~--p~~~l~~~~~~LKpGG~lv~~~P~~---------------~Qv~~~~~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 173 VDALFL-----DVPD--PWNYIDKCWEALKGGGRFATVCPTT---------------NQVQETLKKLQELPFIRIEVWE 229 (266)
T ss_dssp EEEEEE-----CCSC--GGGTHHHHHHHEEEEEEEEEEESSH---------------HHHHHHHHHHHHSSEEEEEEEC
T ss_pred eeeeEe-----cCCC--HHHHHHHHHhhcCCCCEEEEEeCcc---------------cHHHHHHHHHHHCCceeEEEEE
Confidence 898875 3433 3478999999999999999853111 1234566778889997665443
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.58 E-value=8.4e-15 Score=111.99 Aligned_cols=138 Identities=20% Similarity=0.317 Sum_probs=105.0
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
....+|+|||||+|..+..++++.+. ++++.|.. +.++.+. ...++ ++..+|+.+.. . .+|++++.+
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~~-----~~~rv-~~~~gD~f~~~---p--~aD~~~l~~ 146 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVVENLS-----GSNNL-TYVGGDMFTSI---P--NADAVLLKY 146 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTTCC-----CBTTE-EEEECCTTTCC---C--CCSEEEEES
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHHHhCc-----ccCce-EEEecCcccCC---C--CCcEEEEEe
Confidence 45578999999999999999888755 89999984 3333221 22578 99999987632 1 479999999
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCC---cEEEEEecccCCCCcc-----------cc-CCCCceeeCHHHHHHHHHhcCCc
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKN---GIIIIKDNVASGVKNE-----------YD-DEDSSVVRSLPQFCLLFSKANLK 223 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~Lkpg---G~l~i~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~l~~~gf~ 223 (256)
++|++++++..++|+++++.|+|| |.+++.+......... +. .......+|.++|.++++++||+
T Consensus 147 vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~ 226 (244)
T d1fp2a2 147 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQ 226 (244)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCC
T ss_pred ecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCc
Confidence 999999999999999999999998 7788877654432210 00 01123457999999999999999
Q ss_pred EEEeee
Q psy8370 224 CVKSEK 229 (256)
Q Consensus 224 ~~~~~~ 229 (256)
.+++..
T Consensus 227 ~~~i~~ 232 (244)
T d1fp2a2 227 HYKISP 232 (244)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 988754
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.57 E-value=3.5e-14 Score=105.40 Aligned_cols=107 Identities=19% Similarity=0.211 Sum_probs=83.7
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.+..|||||||+|.++..++...+. .++|+|+++.++..+.++....+ .++ .+..+|+.++......+++|.|++.+
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni-~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNI-KLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSE-EEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccc-eeeecCHHHHhhhccCCceehhcccc
Confidence 4568999999999999999888655 89999999999999999888766 467 99999988765322234899998875
Q ss_pred hhhccCHH------HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 159 VLMFILDE------DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 159 ~l~~~~~~------~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.-.+.... --..+++.++++|||||.|++.
T Consensus 110 PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~ 145 (204)
T d1yzha1 110 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 145 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 43322111 0147999999999999999885
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.54 E-value=4.7e-14 Score=108.65 Aligned_cols=129 Identities=21% Similarity=0.228 Sum_probs=97.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.++++....+ .++ .++++|+.++... . .||.|++.
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v-~~~~~D~~~~~~~-~--~~D~Ii~~ 181 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRM-SAYNMDNRDFPGE-N--IADRILMG 181 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTE-EEECSCTTTCCCC-S--CEEEEEEC
T ss_pred CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceE-EEEEcchHHhccC-C--CCCEEEEC
Confidence 6789999999999999999988886699999999999999999998765 456 8899999887653 3 69999876
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
.-.. ...+++.+.+.|+|||.+.+......... .....+.+.+.....|+.+...
T Consensus 182 ~p~~------~~~~l~~a~~~l~~gG~lh~~~~~~~~~~---------~~~~~e~~~~~~~~~g~~v~~~ 236 (260)
T d2frna1 182 YVVR------THEFIPKALSIAKDGAIIHYHNTVPEKLM---------PREPFETFKRITKEYGYDVEKL 236 (260)
T ss_dssp CCSS------GGGGHHHHHHHEEEEEEEEEEEEEEGGGT---------TTTTHHHHHHHHHHTTCEEEEE
T ss_pred CCCc------hHHHHHHHHhhcCCCCEEEEEeccccccc---------hhhHHHHHHHHHHHcCCceEEE
Confidence 3211 12577788899999999877533222110 1123456778888899987543
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.53 E-value=3.6e-14 Score=105.92 Aligned_cols=103 Identities=18% Similarity=0.164 Sum_probs=86.8
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeE
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
+.....++.+|||||||+|+.+..++.....+|+++|.++.+.+.+++++...+ .++ .+.++|..+..+... +||.
T Consensus 72 ~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv-~~~~gd~~~g~~~~~--pfD~ 148 (215)
T d1jg1a_ 72 EIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNV-HVILGDGSKGFPPKA--PYDV 148 (215)
T ss_dssp HHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSE-EEEESCGGGCCGGGC--CEEE
T ss_pred HhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCcee-EEEECccccCCcccC--ccee
Confidence 344688999999999999999998876533479999999999999999999877 567 899999988766655 8999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|++.....++|.. +...|+|||.+++.
T Consensus 149 Iiv~~a~~~ip~~--------l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 149 IIVTAGAPKIPEP--------LIEQLKIGGKLIIP 175 (215)
T ss_dssp EEECSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred EEeecccccCCHH--------HHHhcCCCCEEEEE
Confidence 9999999888633 45679999999985
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.52 E-value=4.5e-14 Score=112.56 Aligned_cols=124 Identities=18% Similarity=0.143 Sum_probs=92.8
Q ss_pred ccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEE
Q psy8370 59 DLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYN 136 (256)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~ 136 (256)
..+.+..++++..++ .++.+|||+|||+|.++..++..|+.+|+++|+|+.+++.+++++..++ .++ .++.
T Consensus 129 flDqr~~r~~~~~~~------~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~-~~~~ 201 (324)
T d2as0a2 129 FLDQRENRLALEKWV------QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRM-KFIV 201 (324)
T ss_dssp CSTTHHHHHHHGGGC------CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGE-EEEE
T ss_pred ccchhhHHHHHHhhc------CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccc-eeee
Confidence 345555666665555 6789999999999999999988888799999999999999999998776 355 7899
Q ss_pred ccccccCCC--CCCCceeEEEechhhhccCH-------HHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 137 VGIQDFKPE--DLNIKYDVIWIQWVLMFILD-------EDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 137 ~d~~~~~~~--~~~~~~D~V~~~~~l~~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+.+.... ....+||+|++.--...... .....++..+.++|+|||.|+++.
T Consensus 202 ~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s 263 (324)
T d2as0a2 202 GSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS 263 (324)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred chhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 998765321 11137999998522111100 235568889999999999999864
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.51 E-value=9.1e-14 Score=106.37 Aligned_cols=137 Identities=22% Similarity=0.311 Sum_probs=103.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
....+|||||||+|.++..++++.+. +++++|+.+. ++.++ ...++ .+..+|+.+..| ..|+++...
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~~-----~~~r~-~~~~~d~~~~~P-----~ad~~~l~~ 147 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDAP-----SYPGV-EHVGGDMFVSIP-----KADAVFMKW 147 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTCC-----CCTTE-EEEECCTTTCCC-----CCSCEECSS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhcc-----cCCce-EEecccccccCC-----CcceEEEEE
Confidence 44678999999999999999988765 8999998653 22111 12467 888999866432 247788899
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc--------------ccCCCCceeeCHHHHHHHHHhcCCcE
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE--------------YDDEDSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
++|.+++++...+|+++++.|+|||.+++.+......... +........++.+++.++++++||+.
T Consensus 148 vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~ 227 (243)
T d1kyza2 148 ICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQG 227 (243)
T ss_dssp SSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSC
T ss_pred EeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999987654332210 00112334578999999999999999
Q ss_pred EEee
Q psy8370 225 VKSE 228 (256)
Q Consensus 225 ~~~~ 228 (256)
+++.
T Consensus 228 vkv~ 231 (243)
T d1kyza2 228 FKVH 231 (243)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8765
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1e-13 Score=109.79 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=78.7
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhc-CC-eEEEEeCCHHHHHHHHHHHHhcC------------CCcceEEEccccccC
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKH-FD-KIDLLEQSSKFIEQAKEEILKDC------------DKLDKCYNVGIQDFK 143 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~------------~~i~~~~~~d~~~~~ 143 (256)
...++.+|||+|||+|.++..|+... .. +|+++|+++++++.|+++++..+ .++ .+...|+.+..
T Consensus 95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv-~~~~~di~~~~ 173 (324)
T d2b25a1 95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV-DFIHKDISGAT 173 (324)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE-EEEESCTTCCC
T ss_pred CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccce-eEEecchhhcc
Confidence 68899999999999999999998763 32 89999999999999999987431 356 78888987765
Q ss_pred CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 144 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 144 ~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.....+.||.|+.. ++.+ ..++.++.++|||||.+++.
T Consensus 174 ~~~~~~~fD~V~LD-----~p~P--~~~l~~~~~~LKpGG~lv~~ 211 (324)
T d2b25a1 174 EDIKSLTFDAVALD-----MLNP--HVTLPVFYPHLKHGGVCAVY 211 (324)
T ss_dssp -------EEEEEEC-----SSST--TTTHHHHGGGEEEEEEEEEE
T ss_pred cccCCCCcceEeec-----CcCH--HHHHHHHHHhccCCCEEEEE
Confidence 43222479999863 3322 25899999999999999984
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.51 E-value=4.7e-14 Score=114.55 Aligned_cols=121 Identities=18% Similarity=0.141 Sum_probs=84.9
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcC----------CCcceE-
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDC----------DKLDKC- 134 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~----------~~i~~~- 134 (256)
.++.+++ +..++.++.++||||||+|..+..++.. ++.+++|||+++.+++.|+++....+ ... .+
T Consensus 203 ~~i~~Il-~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~-~~~ 280 (406)
T d1u2za_ 203 NFLSDVY-QQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV-EFS 280 (406)
T ss_dssp HHHHHHH-HHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE-EEE
T ss_pred HHHHHHH-HHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccc-eee
Confidence 4566666 5567899999999999999999998876 45589999999999999998876421 111 11
Q ss_pred EEccccccCC-CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEeccc
Q psy8370 135 YNVGIQDFKP-EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 192 (256)
Q Consensus 135 ~~~d~~~~~~-~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 192 (256)
..++..+... ...-..+|+|+++. +.+. +++...++++.+.|||||.+++.+...
T Consensus 281 ~~~~f~~~~~~d~~~~~adVV~inn-~~f~--~~l~~~L~ei~r~LKPGGrIVs~~~~~ 336 (406)
T d1u2za_ 281 LKKSFVDNNRVAELIPQCDVILVNN-FLFD--EDLNKKVEKILQTAKVGCKIISLKSLR 336 (406)
T ss_dssp ESSCSTTCHHHHHHGGGCSEEEECC-TTCC--HHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred eeechhhccccccccccceEEEEec-ccCc--hHHHHHHHHHHHhcCCCcEEEEecccC
Confidence 2233322211 00012578888764 3444 677889999999999999999865433
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.45 E-value=1.9e-13 Score=102.76 Aligned_cols=100 Identities=18% Similarity=0.210 Sum_probs=81.1
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHh----cC---CeEEEEeCCHHHHHHHHHHHHhcC------CCcceEEEccccccCC
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAK----HF---DKIDLLEQSSKFIEQAKEEILKDC------DKLDKCYNVGIQDFKP 144 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~----~~---~~v~~vD~s~~~~~~a~~~~~~~~------~~i~~~~~~d~~~~~~ 144 (256)
...++.+|||||||+|+.+..++.. |. .+|+++|+++++++.+++++.... .++ .+..+|..+..+
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv-~~~~~d~~~~~~ 155 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL-LIVEGDGRKGYP 155 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE-EEEESCGGGCCG
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEE-EEEecccccccc
Confidence 5678999999999999998877654 21 279999999999999998865321 366 889999887766
Q ss_pred CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
... +||.|++...+.++|. .+.+.|||||++++.
T Consensus 156 ~~~--~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 156 PNA--PYNAIHVGAAAPDTPT--------ELINQLASGGRLIVP 189 (223)
T ss_dssp GGC--SEEEEEECSCBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred ccc--ceeeEEEEeechhchH--------HHHHhcCCCcEEEEE
Confidence 655 8999999999888863 256899999999885
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.45 E-value=1.5e-13 Score=97.50 Aligned_cols=105 Identities=14% Similarity=0.219 Sum_probs=80.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
-++.+|||+|||+|.++..++.+|+.+|+++|.++.+++.+++++...+ .++ .+++.|+........ ++||+|++.
T Consensus 13 ~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~-~ii~~D~~~~l~~~~-~~fDiIf~D 90 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRF-TLLKMEAERAIDCLT-GRFDLVFLD 90 (152)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGE-EEECSCHHHHHHHBC-SCEEEEEEC
T ss_pred CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccch-hhhcccccccccccc-cccceeEec
Confidence 4688999999999999999889999899999999999999999998665 346 889999877543222 489999986
Q ss_pred hhhhccCHHHHHHHHHHHh--hhcCCCcEEEEEe
Q psy8370 158 WVLMFILDEDIIKFLNLCK--QILNKNGIIIIKD 189 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~ 189 (256)
--.. .......++.+. +.|+|+|.+++..
T Consensus 91 PPy~---~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 91 PPYA---KETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp CSSH---HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhhc---cchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 2111 123344555553 5699999999853
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.42 E-value=2.9e-13 Score=107.40 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=81.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccC----CCCCCCceeEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFK----PEDLNIKYDVI 154 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~----~~~~~~~~D~V 154 (256)
.++.+|||++||+|.++..++. +..+|+++|+|+.+++.++++....+ .++ .++..|+.++. ... ++||+|
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~-~~i~~d~~~~~~~~~~~~--~~fD~V 219 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNV-RVLEANAFDLLRRLEKEG--ERFDLV 219 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTTE-EEEESCHHHHHHHHHHTT--CCEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCCc-ceeeccHHHHhhhhHhhh--cCCCEE
Confidence 3688999999999999998864 54599999999999999999998877 356 88999987653 222 379999
Q ss_pred Eechh---------hhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 155 WIQWV---------LMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 155 ~~~~~---------l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
++.-- .... .....++..+.++|+|||.++++.
T Consensus 220 i~DpP~~~~~~~~~~~~~--~~~~~l~~~a~~lLkpGG~Lv~~s 261 (318)
T d1wxxa2 220 VLDPPAFAKGKKDVERAY--RAYKEVNLRAIKLLKEGGILATAS 261 (318)
T ss_dssp EECCCCSCCSTTSHHHHH--HHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEcCCccccchHHHHHHH--HHHHHHHHHHHHHcCCCCEEEEEe
Confidence 98621 1111 344578899999999999999863
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.41 E-value=6.7e-13 Score=105.00 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEccccccCCC--CCCCceeEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC---DKLDKCYNVGIQDFKPE--DLNIKYDVI 154 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~i~~~~~~d~~~~~~~--~~~~~~D~V 154 (256)
.++.+|||+.||+|.++..++..|+.+|++||+|+.+++.+++++...+ .++ .++.+|+.++... ....+||+|
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~-~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANH-QLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTE-EEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcce-EEEEccHHHHHHHHHhhcCCCCEE
Confidence 5688999999999999999877788799999999999999999998665 245 8899998765421 111379999
Q ss_pred Eech---h--hhccCH--HHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 155 WIQW---V--LMFILD--EDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 155 ~~~~---~--l~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
++.- . -..... .+...+++.+.++|+|||.|+++.
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s 263 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST 263 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 9851 1 011111 345679999999999999999974
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.36 E-value=3.3e-12 Score=94.01 Aligned_cols=107 Identities=16% Similarity=0.217 Sum_probs=75.0
Q ss_pred CCCCeEEEEcCCCCHhHHH----HHHhc----CC-eEEEEeCCHHHHHHHHHHH--------------H----hcC----
Q psy8370 80 PGKTRVLDVGAGIGRISKY----LLAKH----FD-KIDLLEQSSKFIEQAKEEI--------------L----KDC---- 128 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~----l~~~~----~~-~v~~vD~s~~~~~~a~~~~--------------~----~~~---- 128 (256)
.++.+|+++|||+|.-... +.+.. .. +++|+|+|+.+++.|++.. . ...
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 4567999999999984433 33321 11 7999999999999997532 0 000
Q ss_pred ----------CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 129 ----------DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 129 ----------~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
..+ .+...+.....+.. .+.||+|+|.+++.+++++...++++.+++.|+|||.|++.
T Consensus 103 ~~~~~~~~~~~~v-~~~~~~~~~~~~~~-~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYV-EFSSVNLLEKQYNV-PGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTE-EEEECCTTCSSCCC-CCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHH-HHhhhhccccccCC-CCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 011 22333333222211 14799999999999999988899999999999999999985
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.32 E-value=3.4e-12 Score=99.66 Aligned_cols=124 Identities=17% Similarity=0.208 Sum_probs=90.4
Q ss_pred cchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC---CCcceEEE
Q psy8370 60 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC---DKLDKCYN 136 (256)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~i~~~~~ 136 (256)
.+.+..++++...+. ...++.+|||++||+|.++..++..|. +|++||.|+.+++.|++++...+ .++ .+++
T Consensus 114 ~dqr~nr~~~~~~~~---~~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~-~~i~ 188 (309)
T d2igta1 114 PEQIVHWEWLKNAVE---TADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPI-RWIC 188 (309)
T ss_dssp GGGHHHHHHHHHHHH---HSSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCE-EEEC
T ss_pred cchhHHHHHHHHHHh---hccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcE-EEEe
Confidence 456666777777661 234678999999999999999988777 89999999999999999988654 246 8999
Q ss_pred ccccccCCCC--CCCceeEEEec---hhh-----hccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 137 VGIQDFKPED--LNIKYDVIWIQ---WVL-----MFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 137 ~d~~~~~~~~--~~~~~D~V~~~---~~l-----~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+|+.++.... ....||+|++. +.- ..--......+++.+.++|+|||.+++.
T Consensus 189 ~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~ 250 (309)
T d2igta1 189 EDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL 250 (309)
T ss_dssp SCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred CCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 9987764211 01379999974 110 0000134456778899999999976664
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.30 E-value=7.2e-12 Score=91.68 Aligned_cols=111 Identities=20% Similarity=0.226 Sum_probs=86.2
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC---CCCCCceeE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP---EDLNIKYDV 153 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~---~~~~~~~D~ 153 (256)
.+.++..+||++||+|..+..+++... .+|+|+|.++.|++.+++++...+.++ .++.+++.++.. ....+++|.
T Consensus 20 ~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~-~~~~~~f~~~~~~~~~~~~~~vdg 98 (192)
T d1m6ya2 20 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRV-SLFKVSYREADFLLKTLGIEKVDG 98 (192)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTE-EEEECCGGGHHHHHHHTTCSCEEE
T ss_pred CCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccc-cchhHHHhhHHHHHHHcCCCCcce
Confidence 578899999999999999999988743 399999999999999999998776678 889988876531 111247999
Q ss_pred EEechhhh-----ccC-H-HHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 154 IWIQWVLM-----FIL-D-EDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 154 V~~~~~l~-----~~~-~-~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|+....+. ... . ......+..+.++|+|||.+++..
T Consensus 99 Il~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 99 ILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp EEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred eeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 98763321 110 1 456678999999999999999863
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.30 E-value=1.2e-11 Score=91.57 Aligned_cols=76 Identities=20% Similarity=0.216 Sum_probs=64.7
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
....+.+|||+|||+|.++..++.+|+.+|+|+|+++.+++.++++....+.+. .+...|+.++. . +||+|+++
T Consensus 43 ~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~-~~~~~d~~~~~---~--~fD~Vi~n 116 (201)
T d1wy7a1 43 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKF-KVFIGDVSEFN---S--RVDIVIMN 116 (201)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSE-EEEESCGGGCC---C--CCSEEEEC
T ss_pred CCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCc-eEEECchhhhC---C--cCcEEEEc
Confidence 344678999999999999999888887799999999999999999988777667 88888887652 3 79999987
Q ss_pred hh
Q psy8370 158 WV 159 (256)
Q Consensus 158 ~~ 159 (256)
--
T Consensus 117 PP 118 (201)
T d1wy7a1 117 PP 118 (201)
T ss_dssp CC
T ss_pred Cc
Confidence 43
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=9e-12 Score=90.88 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=80.1
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.+.+|||++||+|.++..++.+|+..|++||.++.+++.+++++...+ .+. .++..|+.++..... ..||+|++.=-
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~-~ii~~d~~~~l~~~~-~~fDlIf~DPP 120 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNA-RVVNSNAMSFLAQKG-TPHNIVFVDPP 120 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSE-EEECSCHHHHHSSCC-CCEEEEEECCS
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccce-eeeeecccccccccc-cccCEEEEcCc
Confidence 568999999999999999999999999999999999999999988655 455 788889877654333 48999999732
Q ss_pred hhccCHHHHHHHHHHHh--hhcCCCcEEEEE
Q psy8370 160 LMFILDEDIIKFLNLCK--QILNKNGIIIIK 188 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~--~~LkpgG~l~i~ 188 (256)
... ......+..+. ..|+++|.+++.
T Consensus 121 Y~~---~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 121 FRR---GLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp SST---TTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ccc---chHHHHHHHHHHCCCCCCCeEEEEE
Confidence 211 12334555554 468999999985
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.27 E-value=1.9e-11 Score=88.05 Aligned_cols=105 Identities=16% Similarity=0.261 Sum_probs=72.6
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc----CCCCCCCceeEE
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF----KPEDLNIKYDVI 154 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~----~~~~~~~~~D~V 154 (256)
..++.+|||+|||+|.++..++.+|. +++++|.|+.+++.++++++..+... ++...+.... .... .+||+|
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~-~v~~~~~d~~~~~~~~~~--~~fD~I 114 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGA-RVVALPVEVFLPEAKAQG--ERFTVA 114 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCC-EEECSCHHHHHHHHHHTT--CCEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhcccc-ceeeeehhcccccccccC--Ccccee
Confidence 36788999999999999999888887 89999999999999999998766443 4555454322 1222 379999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
++.=-++.--...+..++. ...|+|||.+++..
T Consensus 115 f~DPPY~~~~~~~l~~l~~--~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 115 FMAPPYAMDLAALFGELLA--SGLVEAGGLYVLQH 147 (171)
T ss_dssp EECCCTTSCTTHHHHHHHH--HTCEEEEEEEEEEE
T ss_pred EEccccccCHHHHHHHHHH--cCCcCCCeEEEEEe
Confidence 9852111100122222332 35789999988753
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.27 E-value=7.2e-12 Score=91.78 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=60.0
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..-.+++|||+|||+|.++..++..|+.+|+++|+++.+++.|+++.. ++ .+..+|+.+++ + +||+|+++
T Consensus 45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~----~~-~~~~~D~~~l~---~--~fD~Vi~N 114 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG----GV-NFMVADVSEIS---G--KYDTWIMN 114 (197)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT----TS-EEEECCGGGCC---C--CEEEEEEC
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc----cc-cEEEEehhhcC---C--cceEEEeC
Confidence 344689999999999999998888888799999999999999998753 45 89999997753 3 79999997
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.3e-11 Score=92.30 Aligned_cols=117 Identities=16% Similarity=0.094 Sum_probs=88.5
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQD 141 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~ 141 (256)
.+++..+. ...++++|||||||+|..+.+++..-. .+++.+|.++...+.|++.+...+ .++ +++.+|+.+
T Consensus 48 g~lL~~L~----~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i-~~~~Gda~e 122 (219)
T d2avda1 48 AQLLANLA----RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKI-DLRLKPALE 122 (219)
T ss_dssp HHHHHHHH----HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTE-EEEESCHHH
T ss_pred HHHHHHHH----HccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceE-EEEEeehhh
Confidence 46666666 345688999999999999999976532 299999999999999999998765 456 889998765
Q ss_pred cCCC----CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEeccc
Q psy8370 142 FKPE----DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 192 (256)
Q Consensus 142 ~~~~----~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 192 (256)
..+. ...++||+|+...--. .....++.+.+.|+|||.+++-+...
T Consensus 123 ~l~~~~~~~~~~~fD~ifiD~dk~-----~y~~~~~~~~~lL~~GGvii~Dn~l~ 172 (219)
T d2avda1 123 TLDELLAAGEAGTFDVAVVDADKE-----NCSAYYERCLQLLRPGGILAVLRVLW 172 (219)
T ss_dssp HHHHHHHTTCTTCEEEEEECSCST-----THHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred cchhhhhhcccCCccEEEEeCCHH-----HHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 4321 1124799999974432 23467788899999999999865443
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.23 E-value=2e-11 Score=91.14 Aligned_cols=115 Identities=15% Similarity=0.123 Sum_probs=84.6
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQD 141 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~ 141 (256)
.+++..++ ...++.+|||||||+|..+..++.... .+++++|.++.+.+.+++++...+ .++ .++.+|..+
T Consensus 45 G~lL~~lv----~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i-~l~~Gd~~e 119 (214)
T d2cl5a1 45 GQIMDAVI----REYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKV-TILNGASQD 119 (214)
T ss_dssp HHHHHHHH----HHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGE-EEEESCHHH
T ss_pred HHHHHHHH----HhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccc-eeeeccccc
Confidence 35666666 334678999999999999999976532 389999999999999999998766 457 899999876
Q ss_pred cCCC----CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 142 FKPE----DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 142 ~~~~----~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
..+. ...+.||+|+....-... .....+.+..+.|+|||++++-
T Consensus 120 ~l~~l~~~~~~~~~D~ifiD~~~~~~---~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 120 LIPQLKKKYDVDTLDMVFLDHWKDRY---LPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp HGGGHHHHSCCCCEEEEEECSCGGGH---HHHHHHHHHTTCEEEEEEEEES
T ss_pred cccchhhcccccccceeeeccccccc---ccHHHHHHHhCccCCCcEEEEe
Confidence 5432 112379999987432222 1223577788999999987763
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=4.5e-10 Score=90.57 Aligned_cols=165 Identities=12% Similarity=0.129 Sum_probs=112.3
Q ss_pred cccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEE
Q psy8370 58 SDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYN 136 (256)
Q Consensus 58 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~ 136 (256)
...+......++..+. +.....++.+|||+-||+|.++..|++.+ .+|+|+|.++.+++.|+++....+ .++ .++.
T Consensus 190 fQ~N~~~~e~l~~~v~-~~~~~~~~~~vlDLycG~G~fsl~La~~~-~~V~gvE~~~~ai~~A~~na~~n~i~n~-~~~~ 266 (358)
T d1uwva2 190 IQVNAGVNQKMVARAL-EWLDVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNV-TFYH 266 (358)
T ss_dssp CCSBHHHHHHHHHHHH-HHHTCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSE-EEEE
T ss_pred hccchhhhhHHHHHHH-HhhccCCCceEEEecccccccchhccccc-cEEEeccCcHHHHHHHHHhHHhcccccc-eeee
Confidence 3444444444555444 44467778999999999999999996655 499999999999999999988776 456 8899
Q ss_pred ccccccCCCC--CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHH
Q psy8370 137 VGIQDFKPED--LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFC 214 (256)
Q Consensus 137 ~d~~~~~~~~--~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (256)
++..+..... ....+|+|+..= |.....+.++.+.+ ++|.-+++++.+.... ..++.
T Consensus 267 ~~~~~~~~~~~~~~~~~d~vilDP-----PR~G~~~~~~~l~~-~~~~~ivYVSCnp~Tl---------------aRDl~ 325 (358)
T d1uwva2 267 ENLEEDVTKQPWAKNGFDKVLLDP-----ARAGAAGVMQQIIK-LEPIRIVYVSCNPATL---------------ARDSE 325 (358)
T ss_dssp CCTTSCCSSSGGGTTCCSEEEECC-----CTTCCHHHHHHHHH-HCCSEEEEEESCHHHH---------------HHHHH
T ss_pred cchhhhhhhhhhhhccCceEEeCC-----CCccHHHHHHHHHH-cCCCEEEEEeCCHHHH---------------HHHHH
Confidence 8887654321 124689998761 11112234555554 3777788887432221 12333
Q ss_pred HHHHhcCCcEEEeeeecCCCCcceeeeEEEecc
Q psy8370 215 LLFSKANLKCVKSEKVTGMPKSLFKIYMFALKP 247 (256)
Q Consensus 215 ~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~ 247 (256)
.|.+.||++.+......+|.+.+-..+..+++
T Consensus 326 -~l~~~gy~l~~i~~~D~FP~T~HvE~v~~l~R 357 (358)
T d1uwva2 326 -ALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 357 (358)
T ss_dssp -HHHHTTCEEEEEEEECCSTTSSCCEEEEEEEC
T ss_pred -HHHHCCCeEeEEEEEecCCCCccEEEEEEEEe
Confidence 45578999999998888888777766666543
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=5.9e-10 Score=84.98 Aligned_cols=145 Identities=16% Similarity=0.092 Sum_probs=94.0
Q ss_pred HHHHHHHhccCC--CCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccc
Q psy8370 67 QFLSSLYCQKKS--DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQD 141 (256)
Q Consensus 67 ~~l~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~ 141 (256)
.++..++ .... ..+..++||||||+|..+..++.+.+. +++|+|+|+.+++.|+++.+..+ .++ .+...+...
T Consensus 46 ~~i~~l~-~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~-~~~~~~~~~ 123 (250)
T d2h00a1 46 HWVEDLI-GHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLI-KVVKVPQKT 123 (250)
T ss_dssp HHHHHHH-CCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTE-EEEECCTTC
T ss_pred HHHHHHh-hhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcce-eeeeeccHH
Confidence 4566655 2221 234569999999999999998876533 99999999999999999998765 345 555554433
Q ss_pred cC----CCCCCCceeEEEechhhhccC---------------H------------------HHHHHHHHHHhhhcCCCcE
Q psy8370 142 FK----PEDLNIKYDVIWIQWVLMFIL---------------D------------------EDIIKFLNLCKQILNKNGI 184 (256)
Q Consensus 142 ~~----~~~~~~~~D~V~~~~~l~~~~---------------~------------------~~~~~~l~~~~~~LkpgG~ 184 (256)
.. .....+.||+|+|+=-+.... + .-..+++++....++..|.
T Consensus 124 ~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~ 203 (250)
T d2h00a1 124 LLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRW 203 (250)
T ss_dssp SSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSC
T ss_pred hhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcE
Confidence 22 111234799999982211100 0 1244566777777888887
Q ss_pred EEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 185 IIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 185 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
+..... ...+.+++.+.+++.|+.-+...
T Consensus 204 ~t~~ig---------------~~~~l~~i~~~L~~~g~~~i~~i 232 (250)
T d2h00a1 204 YSCMLG---------------KKCSLAPLKEELRIQGVPKVTYT 232 (250)
T ss_dssp EEEEES---------------STTSHHHHHHHHHHTTCSEEEEE
T ss_pred EEEEec---------------chhhHHHHHHHHHHcCCCeEEEE
Confidence 754310 01245778899999999755433
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.16 E-value=2.6e-10 Score=87.50 Aligned_cols=125 Identities=15% Similarity=0.176 Sum_probs=84.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.+..+|+|+|||+|..+..++.....+|+++|+|+.+++.|+++....+ .++ .+...|+.+...... ++||+|+++
T Consensus 109 ~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~-~i~~~~~~~~~~~~~-~~fDlIVsN 186 (271)
T d1nv8a_ 109 YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRF-FVRKGEFLEPFKEKF-ASIEMILSN 186 (271)
T ss_dssp HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSE-EEEESSTTGGGGGGT-TTCCEEEEC
T ss_pred ccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCcee-EEeeccccccccccc-CcccEEEEc
Confidence 4467899999999999998876554599999999999999999998766 344 677888876654332 489999998
Q ss_pred --hh---------hhccCH-------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHh
Q psy8370 158 --WV---------LMFILD-------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 219 (256)
Q Consensus 158 --~~---------l~~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (256)
++ ..|-|. +.+..+-+-+.+.|+|||.+++.... ...+.+.+++++
T Consensus 187 PPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~----------------~Q~~~v~~l~~~ 250 (271)
T d1nv8a_ 187 PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE----------------DQVEELKKIVSD 250 (271)
T ss_dssp CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT----------------TCHHHHTTTSTT
T ss_pred ccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH----------------HHHHHHHHHHHh
Confidence 00 111111 01111222246789999999985211 013556677777
Q ss_pred cCC
Q psy8370 220 ANL 222 (256)
Q Consensus 220 ~gf 222 (256)
.||
T Consensus 251 ~g~ 253 (271)
T d1nv8a_ 251 TVF 253 (271)
T ss_dssp CEE
T ss_pred CCE
Confidence 776
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.15 E-value=1.3e-10 Score=89.92 Aligned_cols=107 Identities=22% Similarity=0.234 Sum_probs=80.8
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-----------cCCCcceEEEccccccCCCCC
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK-----------DCDKLDKCYNVGIQDFKPEDL 147 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-----------~~~~i~~~~~~d~~~~~~~~~ 147 (256)
.+.+.+||.||+|.|..+..++.....+|++||+++.+++.|++.+.. ...++ +++.+|...+.....
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv-~i~~~Da~~~l~~~~ 148 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKA-KLTIGDGFEFIKNNR 148 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSE-EEEESCHHHHHHHCC
T ss_pred CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCc-eEEEChHHHHHhccC
Confidence 356789999999999999998776666999999999999999987632 12467 889999887754434
Q ss_pred CCceeEEEechhhhccCHHH--HHHHHHHHhhhcCCCcEEEEE
Q psy8370 148 NIKYDVIWIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+||+|++...-..-+... -..+++.+++.|+|||++++.
T Consensus 149 --~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 149 --GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp --CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred --CCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 899999764321111111 146899999999999999874
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.14 E-value=1.4e-10 Score=84.22 Aligned_cols=106 Identities=16% Similarity=0.229 Sum_probs=80.1
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCC--CCCCceeEE
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPE--DLNIKYDVI 154 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~--~~~~~~D~V 154 (256)
...+.+|||++||+|.++..++.+|+..|++||.++.+++.+++++...+ .++ .++..|+...... ....+||+|
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~-~i~~~D~~~~l~~~~~~~~~fDlI 117 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKF-EVRKMDANRALEQFYEEKLQFDLV 117 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGE-EEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhccccc-ccccccchhhhhhhcccCCCcceE
Confidence 35689999999999999999999999899999999999999999987654 356 8899998765321 111379999
Q ss_pred EechhhhccCHHHHHHHHHHHh--hhcCCCcEEEEE
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCK--QILNKNGIIIIK 188 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~i~ 188 (256)
++.==... ......++.+. ..|+|+|.+++.
T Consensus 118 flDPPY~~---~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 118 LLDPPYAK---QEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp EECCCGGG---CCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred Eechhhhh---hHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 98632111 12345666664 468999988875
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.13 E-value=6.1e-11 Score=88.90 Aligned_cols=114 Identities=17% Similarity=0.107 Sum_probs=87.1
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEcccccc
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDF 142 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~ 142 (256)
+++..+. ...++++|||||+++|..+.+++.... .+++.+|.++...+.|++.+...+ .++ .++.+++.+.
T Consensus 49 ~~L~~L~----~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i-~~~~g~a~~~ 123 (227)
T d1susa1 49 QFLSMLL----KLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKI-DFREGPALPV 123 (227)
T ss_dssp HHHHHHH----HHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGE-EEEESCHHHH
T ss_pred HHHHHHH----HhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccce-eeeehHHHHH
Confidence 5666655 234688999999999999999986532 299999999999999999998766 456 8889998665
Q ss_pred CCCC-----CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 143 KPED-----LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 143 ~~~~-----~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+.. ..++||+|+...--. .....++.+.+.|+|||.+++-+.
T Consensus 124 L~~l~~~~~~~~~fD~iFiDa~k~-----~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 124 LDEMIKDEKNHGSYDFIFVDADKD-----NYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp HHHHHHCGGGTTCBSEEEECSCST-----THHHHHHHHHHHBCTTCCEEEETT
T ss_pred HHHHHhccccCCceeEEEeccchh-----hhHHHHHHHHhhcCCCcEEEEccC
Confidence 4321 124799999974322 234688888999999999998543
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=3.6e-09 Score=82.03 Aligned_cols=107 Identities=20% Similarity=0.233 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc-----CCCcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
+.+++||-||.|.|..+..++... ..+|++||+++.+++.+++.+... ..++ +++.+|...+..... +.||+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv-~v~~~Da~~~l~~~~-~~yDv 165 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRA-EIVIANGAEYVRKFK-NEFDV 165 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTE-EEEESCHHHHGGGCS-SCEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCc-EEEhhhHHHHHhcCC-CCCCE
Confidence 457899999999999999987654 358999999999999999977532 2577 889999887765433 48999
Q ss_pred EEechhhhcc-CHH--HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFI-LDE--DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~-~~~--~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|++...-... +.. --..+++.+++.|+|||.+++.
T Consensus 166 Ii~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 166 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp EEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence 9976332111 111 0246999999999999999874
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=99.01 E-value=1.3e-09 Score=81.99 Aligned_cols=77 Identities=14% Similarity=0.286 Sum_probs=64.1
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~ 146 (256)
..+.+++ +.....++.+|||||||+|.++..++..+. +|++||+++.+.+.+++++... .++ .++.+|+.++....
T Consensus 8 ~i~~~iv-~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~-~n~-~i~~~D~l~~~~~~ 83 (235)
T d1qama_ 8 HNIDKIM-TNIRLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDH-DNF-QVLNKDILQFKFPK 83 (235)
T ss_dssp HHHHHHH-TTCCCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTC-CSE-EEECCCGGGCCCCS
T ss_pred HHHHHHH-HhcCCCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhcc-cch-hhhhhhhhhccccc
Confidence 3466666 666788999999999999999999988765 8999999999999999887654 377 89999999887544
Q ss_pred C
Q psy8370 147 L 147 (256)
Q Consensus 147 ~ 147 (256)
.
T Consensus 84 ~ 84 (235)
T d1qama_ 84 N 84 (235)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.99 E-value=3.6e-10 Score=88.76 Aligned_cols=107 Identities=21% Similarity=0.274 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc------CCCcceEEEccccccCCCCCCCcee
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD------CDKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~------~~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
+.+++||.||+|.|..+..+++.. ..+|++||+++.+++.|++.+... ..++ +++.+|..+...... ..||
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv-~i~~~Da~~~l~~~~-~~yD 153 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRA-VLVIDDARAYLERTE-ERYD 153 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTE-EEEESCHHHHHHHCC-CCEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCce-EEEEchHHHHhhhcC-Cccc
Confidence 567899999999999999987654 348999999999999999987531 2467 889999987754322 4799
Q ss_pred EEEechh--hh-ccCHH--HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 153 VIWIQWV--LM-FILDE--DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 153 ~V~~~~~--l~-~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+|++... .. ..+.. --..+++.+++.|+|||++++.
T Consensus 154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~ 194 (312)
T d1uira_ 154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (312)
T ss_dssp EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence 9996532 11 00000 0146899999999999999874
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.96 E-value=4.4e-09 Score=81.57 Aligned_cols=108 Identities=15% Similarity=0.194 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHh-----cCCCcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILK-----DCDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~-----~~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
+.+++||-||.|.|..+..+++.. ..++++||+++.+++.+++.+.. ...++ +++.+|..........++||+
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~-~i~~~Da~~~l~~~~~~~yDv 157 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRV-NLVIGDGVAFLKNAAEGSYDA 157 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTE-EEEESCHHHHHHTSCTTCEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCc-EEEEccHHHHHhhccccCccE
Confidence 457899999999999999987653 35899999999999999997742 13577 889999877653322237999
Q ss_pred EEechhhhccCHH--HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILDE--DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+....-..-+.. --..+++.+++.|+|||.+++.
T Consensus 158 Ii~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 194 (290)
T d1xj5a_ 158 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 194 (290)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence 9975321100000 1246899999999999999985
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=5e-09 Score=77.00 Aligned_cols=111 Identities=15% Similarity=0.222 Sum_probs=86.1
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccC
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFK 143 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~ 143 (256)
+++++.+.. . ..-++.+|+|+|||.|.-+..++-..+. +++.+|.+..-+...++.....+ .++ .+++..+++..
T Consensus 52 rHi~DSl~~-~-~~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv-~v~~~R~E~~~ 128 (207)
T d1jsxa_ 52 RHILDSIVV-A-PYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENI-EPVQSRVEEFP 128 (207)
T ss_dssp HHHHHHHHH-G-GGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSE-EEEECCTTTSC
T ss_pred HHhcchHhh-h-hhhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcce-eeeccchhhhc
Confidence 455555441 1 2234579999999999999998776654 89999999998888888877766 356 88888888875
Q ss_pred CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 144 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 144 ~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.. . +||+|++..+ .....+++-+...++++|.+++.
T Consensus 129 ~~-~--~fD~V~sRA~------~~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 129 SE-P--PFDGVISRAF------ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp CC-S--CEEEEECSCS------SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred cc-c--ccceehhhhh------cCHHHHHHHHHHhcCCCcEEEEE
Confidence 43 2 6999999766 33457888899999999999985
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.93 E-value=3.3e-09 Score=76.94 Aligned_cols=105 Identities=20% Similarity=0.251 Sum_probs=76.8
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCC-CCCCCceeEEEec
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKP-EDLNIKYDVIWIQ 157 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~-~~~~~~~D~V~~~ 157 (256)
.+.+|||+.||+|.++.+.+.+|+..|+.||.+..+++..+++++..+ .....+...|+.++.. .....+||+|++.
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 567999999999999999999999999999999999999999998764 2222556666554432 1112379999986
Q ss_pred hhhhccCHHHHHHHHHHHh--hhcCCCcEEEEE
Q psy8370 158 WVLMFILDEDIIKFLNLCK--QILNKNGIIIIK 188 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~i~ 188 (256)
==... ......++.+. ..|+++|.+++.
T Consensus 123 PPY~~---~~~~~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 123 PPFHF---NLAEQAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp CCSSS---CHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hhHhh---hhHHHHHHHHHHhCCcCCCcEEEEE
Confidence 22111 22345666664 468999999885
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.91 E-value=6.9e-09 Score=82.41 Aligned_cols=140 Identities=10% Similarity=-0.006 Sum_probs=91.7
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHh----cCC--eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccc
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK----HFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 140 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~----~~~--~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~ 140 (256)
+++..++.......++.+|||.|||+|.++..+..+ ... .++|+|+++.+++.|+.+....+... .....|..
T Consensus 103 ~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~-~~~~~d~~ 181 (328)
T d2f8la1 103 FIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKM-TLLHQDGL 181 (328)
T ss_dssp HHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCC-EEEESCTT
T ss_pred HHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhh-hhhccccc
Confidence 344443322235567789999999999999887643 111 79999999999999998887666556 66777765
Q ss_pred ccCCCCCCCceeEEEechhhhccCH----------------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCC
Q psy8370 141 DFKPEDLNIKYDVIWIQWVLMFILD----------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDS 204 (256)
Q Consensus 141 ~~~~~~~~~~~D~V~~~~~l~~~~~----------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 204 (256)
...+. .+||+|+++--+..... .....+++.+.+.|+|||.+.+..+.....
T Consensus 182 ~~~~~---~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~--------- 249 (328)
T d2f8la1 182 ANLLV---DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFG--------- 249 (328)
T ss_dssp SCCCC---CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGG---------
T ss_pred ccccc---ccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCcccc---------
Confidence 44332 36999999832211100 112347999999999999887753321110
Q ss_pred ceeeCHHHHHHHHHhcC
Q psy8370 205 SVVRSLPQFCLLFSKAN 221 (256)
Q Consensus 205 ~~~~~~~~~~~~l~~~g 221 (256)
......+++.+.+.+
T Consensus 250 --~~~~~~lR~~L~~~~ 264 (328)
T d2f8la1 250 --TSDFAKVDKFIKKNG 264 (328)
T ss_dssp --STTHHHHHHHHHHHE
T ss_pred --CchhHHHHHHHHhCC
Confidence 123466787766654
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.90 E-value=5.8e-09 Score=80.23 Aligned_cols=107 Identities=21% Similarity=0.215 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHh-----cCCCcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILK-----DCDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
+.+.+||-||.|.|..+..+++. +..+|+.||+++.+++.|++.+.. ...++ .++.+|......... .+||+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~-~i~~~D~~~~l~~~~-~~yDv 151 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRV-DVQVDDGFMHIAKSE-NQYDV 151 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTE-EEEESCSHHHHHTCC-SCEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCe-EEEechHHHHHhhcC-CCCCE
Confidence 56789999999999999998765 345999999999999999998752 12567 889999877654333 48999
Q ss_pred EEechhhhccCHH--HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILDE--DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+....-..-+.. --..+++.+++.|+|+|.++..
T Consensus 152 Ii~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence 9976321110000 0236899999999999999974
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=2e-09 Score=83.25 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=80.3
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHh-----cCCCcceEEEccccccCCCCCCCcee
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILK-----DCDKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
.+.+++||-||.|.|..+..+++. ...++++||+++.+++.|++.+.. ...++ +++.+|...+..... ++||
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv-~i~~~Da~~~l~~~~-~~yD 153 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKL-TLHVGDGFEFMKQNQ-DAFD 153 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTE-EEEESCHHHHHHTCS-SCEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCc-eEEEccHHHHHhcCC-CCCC
Confidence 356789999999999999998765 345999999999999999998752 22577 899999877764333 4899
Q ss_pred EEEechhhhccCHH--HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 153 VIWIQWVLMFILDE--DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 153 ~V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+|++...-..-+.. --..+++.+++.|+|||.+++.
T Consensus 154 vIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 154 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence 99986321111111 1235899999999999999885
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.87 E-value=1.2e-08 Score=79.39 Aligned_cols=107 Identities=23% Similarity=0.256 Sum_probs=78.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc-----CCCcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
+.+++||-||.|.|..+..+++.. ..+|+.||+++.+++.+++.+... ..++ +++.+|...+..... .+||+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv-~i~i~Da~~~l~~~~-~~yDv 182 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKL-DLFCGDGFEFLKNHK-NEFDV 182 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTE-EEECSCHHHHHHHCT-TCEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCe-EEEEchHHHHHHhCC-CCCCE
Confidence 457899999999999999997654 358999999999999999987532 2567 888999887754322 48999
Q ss_pred EEechhhhccCHH--HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILDE--DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|++...-..-+.. --..+++.+++.|+|||+++..
T Consensus 183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 183 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp EEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence 9986432111111 1246899999999999999984
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.86 E-value=4e-08 Score=73.49 Aligned_cols=130 Identities=15% Similarity=0.129 Sum_probs=93.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCC-CCceeEEEe
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDL-NIKYDVIWI 156 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~-~~~~D~V~~ 156 (256)
....+++|||+|.|.-+..++-..+. +++.+|.+..-+...+......+ .++ .++...+++...... .++||+|++
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~-~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENT-TFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSE-EEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCc-EEEeehhhhccccccccccceEEEE
Confidence 35679999999999999988754433 89999999988888777777666 345 777887777654221 247999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
..+ ..+..+++-+...+++||.+++.- .. .+....++..+.+...|+++..+..
T Consensus 148 RAv------a~l~~ll~~~~~~l~~~g~~i~~K-----------G~--~~~~El~~a~~~~~~~~~~~~~v~~ 201 (239)
T d1xdza_ 148 RAV------ARLSVLSELCLPLVKKNGLFVALK-----------AA--SAEEELNAGKKAITTLGGELENIHS 201 (239)
T ss_dssp ECC------SCHHHHHHHHGGGEEEEEEEEEEE-----------CC---CHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred hhh------hCHHHHHHHHhhhcccCCEEEEEC-----------CC--ChHHHHHHHHHHHHHcCCEEEEEEE
Confidence 866 344579999999999999999852 11 1111234445677788998876553
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.81 E-value=6.1e-10 Score=84.36 Aligned_cols=91 Identities=13% Similarity=0.189 Sum_probs=69.1
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCC
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN 148 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~ 148 (256)
+.+++ +.....++.+|||||||+|.++..+++.+. +|+++|+++.+++.+++++... .++ .++.+|+.++.....
T Consensus 18 i~kIv-~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~~-~n~-~ii~~D~l~~~~~~~- 92 (245)
T d1yuba_ 18 LNQII-KQLNLKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKLN-TRV-TLIHQDILQFQFPNK- 92 (245)
T ss_dssp HHHHH-HHCCCCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTTC-SEE-EECCSCCTTTTCCCS-
T ss_pred HHHHH-HhcCCCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhhc-cch-hhhhhhhhccccccc-
Confidence 44444 444678889999999999999999988875 8999999999999888776544 367 889999998876654
Q ss_pred CceeEEEechhhhccCHH
Q psy8370 149 IKYDVIWIQWVLMFILDE 166 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~ 166 (256)
.++.|+++. -+++..+
T Consensus 93 -~~~~vv~NL-PY~Ist~ 108 (245)
T d1yuba_ 93 -QRYKIVGNI-PYHLSTQ 108 (245)
T ss_dssp -SEEEEEEEC-CSSSCHH
T ss_pred -eeeeEeeee-ehhhhHH
Confidence 556666553 3456443
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.74 E-value=2.5e-08 Score=74.50 Aligned_cols=103 Identities=15% Similarity=0.127 Sum_probs=70.9
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCcee
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
+.....++.+|||.|||+|.++..+.+... ..++|+|+++.++..++ .. .++.+|....... . .||
T Consensus 13 ~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~--------~~-~~~~~~~~~~~~~-~--~fd 80 (223)
T d2ih2a1 13 SLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP--------WA-EGILADFLLWEPG-E--AFD 80 (223)
T ss_dssp HHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT--------TE-EEEESCGGGCCCS-S--CEE
T ss_pred HhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc--------cc-eeeeeehhccccc-c--ccc
Confidence 334667889999999999999888766533 37999999987544322 22 5677777665543 2 699
Q ss_pred EEEechhhhccC----------H-----------------HHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 153 VIWIQWVLMFIL----------D-----------------EDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 153 ~V~~~~~l~~~~----------~-----------------~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+++--+.... . .-...+++.+.+.|+|||.+.+..
T Consensus 81 ~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~ 144 (223)
T d2ih2a1 81 LILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 144 (223)
T ss_dssp EEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEE
Confidence 999873321100 0 012457888999999999988864
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=1.3e-07 Score=72.52 Aligned_cols=83 Identities=19% Similarity=0.248 Sum_probs=65.3
Q ss_pred HHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCC
Q psy8370 68 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~ 145 (256)
.+.+.+ +.....++..|||||+|+|.++..+++.+. +++++|+++.+++..++.+.... .++ .++.+|+.....+
T Consensus 9 i~~kIv-~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~-~~i~~D~l~~~~~ 85 (278)
T d1zq9a1 9 IINSII-DKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKL-QVLVGDVLKTDLP 85 (278)
T ss_dssp HHHHHH-HHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGE-EEEESCTTTSCCC
T ss_pred HHHHHH-HHhCCCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccch-hhhHHHHhhhhhh
Confidence 344444 444677889999999999999999998875 99999999999999999887543 356 8899999877543
Q ss_pred CCCCceeEEEec
Q psy8370 146 DLNIKYDVIWIQ 157 (256)
Q Consensus 146 ~~~~~~D~V~~~ 157 (256)
.++.|+++
T Consensus 86 ----~~~~vV~N 93 (278)
T d1zq9a1 86 ----FFDTCVAN 93 (278)
T ss_dssp ----CCSEEEEE
T ss_pred ----hhhhhhcc
Confidence 24566655
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.55 E-value=1.3e-07 Score=67.88 Aligned_cols=130 Identities=14% Similarity=0.070 Sum_probs=92.6
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC---CCCCCceeEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP---EDLNIKYDVI 154 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~---~~~~~~~D~V 154 (256)
.+.++..++|..+|.|..+..+++++. +|+|+|.++.+++.+++.. ..++ .+++.++.++.. ....+.+|.|
T Consensus 15 ~~~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~~~---~~~~-~~~~~~f~~~~~~l~~~~~~~vdgI 89 (182)
T d1wg8a2 15 AVRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGLH---LPGL-TVVQGNFRHLKRHLAALGVERVDGI 89 (182)
T ss_dssp TCCTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHTC---CTTE-EEEESCGGGHHHHHHHTTCSCEEEE
T ss_pred CCCCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhhcc---ccce-eEeehHHHHHHHHHHHcCCCccCEE
Confidence 578899999999999999999988765 9999999999999988652 2356 778887766532 1112479999
Q ss_pred Eechhh-----hccCH--HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 155 WIQWVL-----MFILD--EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 155 ~~~~~l-----~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
+....+ ..... ......|......|+|||.+.+..... .....+.+.+++.++..+..
T Consensus 90 l~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs---------------~Ed~ivk~~~~e~~~k~i~k 154 (182)
T d1wg8a2 90 LADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS---------------LEDRVVKRFLRESGLKVLTK 154 (182)
T ss_dssp EEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH---------------HHHHHHHHHHHHHCSEESCS
T ss_pred EEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc---------------chhHHHHHHHhhccceeccC
Confidence 976322 11111 345568889999999999999863211 11245778888888876543
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.48 E-value=2.8e-06 Score=66.34 Aligned_cols=144 Identities=10% Similarity=0.086 Sum_probs=97.9
Q ss_pred hHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccc
Q psy8370 65 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQD 141 (256)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~ 141 (256)
+..+...++ ...++.+|||+.||.|.=+..++.... ..++++|.++.-++..+++....+ .++ .....|...
T Consensus 104 aS~l~~~~l----~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i-~~~~~d~~~ 178 (313)
T d1ixka_ 104 SSMYPPVAL----DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNV-ILFHSSSLH 178 (313)
T ss_dssp HHHHHHHHH----CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSE-EEESSCGGG
T ss_pred cccchhhcc----cCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcc-ccccccccc
Confidence 344555555 567889999999999998887766532 279999999999999998888776 344 556666666
Q ss_pred cCCCCCCCceeEEEech------hhh-------ccCHH-------HHHHHHHHHhhhcCCCcEEEEEecccCCCCccccC
Q psy8370 142 FKPEDLNIKYDVIWIQW------VLM-------FILDE-------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDD 201 (256)
Q Consensus 142 ~~~~~~~~~~D~V~~~~------~l~-------~~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~ 201 (256)
...... .||.|+... ++. ....+ ...+++..+.+.|||||.++-++-.....
T Consensus 179 ~~~~~~--~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~e------ 250 (313)
T d1ixka_ 179 IGELNV--EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE------ 250 (313)
T ss_dssp GGGGCC--CEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG------
T ss_pred cccccc--cccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChH------
Confidence 554444 799998641 111 11111 13457889999999999888763221111
Q ss_pred CCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 202 EDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
-++..+..++++.+|+++..
T Consensus 251 ------ENE~VV~~~L~~~~~~~~~~ 270 (313)
T d1ixka_ 251 ------ENEFVIQWALDNFDVELLPL 270 (313)
T ss_dssp ------GTHHHHHHHHHHSSEEEECC
T ss_pred ------hHHHHHHHHHhcCCCEEeec
Confidence 24566778888888777643
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.47 E-value=7.7e-08 Score=72.84 Aligned_cols=64 Identities=11% Similarity=0.241 Sum_probs=53.8
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 144 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~ 144 (256)
...++..|||||||+|.++..|++.+. +|+++|+++.+++..++.+... .++ .++.+|+.++..
T Consensus 18 ~~~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~-~~~-~ii~~D~l~~~~ 81 (252)
T d1qyra_ 18 NPQKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHPFLG-PKL-TIYQQDAMTFNF 81 (252)
T ss_dssp CCCTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCTTTG-GGE-EEECSCGGGCCH
T ss_pred CCCCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHhhhc-cch-hHHhhhhhhhcc
Confidence 567889999999999999999987765 8999999999999998765433 367 889999987654
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.40 E-value=1.9e-06 Score=61.67 Aligned_cols=139 Identities=15% Similarity=0.117 Sum_probs=85.2
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC------CCCc
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED------LNIK 150 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~------~~~~ 150 (256)
..++.+|||+||+.|.++..+.... ...++++|+.+- .. -... .++.+|+.+..... ..+.
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~~-i~~~-~~~~~d~~~~~~~~~~~~~~~~~~ 88 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------DP-IVGV-DFLQGDFRDELVMKALLERVGDSK 88 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------CC-CTTE-EEEESCTTSHHHHHHHHHHHTTCC
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------cc-cCCc-eEeecccccchhhhhhhhhccCcc
Confidence 4678899999999999999887653 238999998762 11 1244 67788876543211 1247
Q ss_pred eeEEEechhhhccCH---------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcC
Q psy8370 151 YDVIWIQWVLMFILD---------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 221 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 221 (256)
+|+|++..+...... .-....+.-+.+.|++||.+++-.... ....++...++. -
T Consensus 89 ~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g---------------~~~~~l~~~l~~-~ 152 (180)
T d1ej0a_ 89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG---------------EGFDEYLREIRS-L 152 (180)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS---------------TTHHHHHHHHHH-H
T ss_pred eeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC---------------ccHHHHHHHHHh-h
Confidence 999999855322111 224456777899999999999953110 123556666664 3
Q ss_pred CcEEEeeeecCCCCcceeeeEEE
Q psy8370 222 LKCVKSEKVTGMPKSLFKIYMFA 244 (256)
Q Consensus 222 f~~~~~~~~~~~~~~~~~~~~~~ 244 (256)
|+-+........-...--.++.|
T Consensus 153 F~~V~~~KP~aSR~~SsE~Ylv~ 175 (180)
T d1ej0a_ 153 FTKVKVRKPDSSRARSREVYIVA 175 (180)
T ss_dssp EEEEEEECCTTSCTTCCEEEEEE
T ss_pred cCEEEEECCCCcccCCceEEEEE
Confidence 76555443333222333344443
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.40 E-value=7.9e-06 Score=62.84 Aligned_cols=145 Identities=12% Similarity=0.068 Sum_probs=94.4
Q ss_pred hHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC
Q psy8370 65 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 143 (256)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~ 143 (256)
+..+...++ ...++.+|||+.+|.|.=+..+++.+.. .++++|+++.=++..++++...+.+.......|.....
T Consensus 90 sS~l~~~~L----~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~ 165 (284)
T d1sqga2 90 SAQGCMTWL----APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQ 165 (284)
T ss_dssp HHHTHHHHH----CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHH
T ss_pred ccccccccc----CccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccch
Confidence 334455555 5678899999999999988888776543 79999999999999999998877544133333332221
Q ss_pred CCCCCCceeEEEec------hhhh-------ccCHH-------HHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCC
Q psy8370 144 PEDLNIKYDVIWIQ------WVLM-------FILDE-------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDED 203 (256)
Q Consensus 144 ~~~~~~~~D~V~~~------~~l~-------~~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 203 (256)
... .+.||.|++. .++. .++.. --.++|..+.+.|+|||.++-+.-.....
T Consensus 166 ~~~-~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~-------- 236 (284)
T d1sqga2 166 WCG-EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE-------- 236 (284)
T ss_dssp HHT-TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG--------
T ss_pred hcc-cccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchh--------
Confidence 111 1379999954 1221 11111 13458889999999999988763221111
Q ss_pred CceeeCHHHHHHHHHhc-CCcEEE
Q psy8370 204 SSVVRSLPQFCLLFSKA-NLKCVK 226 (256)
Q Consensus 204 ~~~~~~~~~~~~~l~~~-gf~~~~ 226 (256)
-+++.+..+++++ +|+++.
T Consensus 237 ----ENE~vv~~~l~~~~~~~~~~ 256 (284)
T d1sqga2 237 ----ENSLQIKAFLQRTADAELCE 256 (284)
T ss_dssp ----GTHHHHHHHHHHCTTCEECS
T ss_pred ----hCHHHHHHHHHhCCCcEEec
Confidence 2456677778774 676654
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.21 E-value=2.3e-06 Score=68.29 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=73.2
Q ss_pred CCCeEEEEcCCCCHhHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhcCC----------------CcceEEEccccccC
Q psy8370 81 GKTRVLDVGAGIGRISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCD----------------KLDKCYNVGIQDFK 143 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~----------------~i~~~~~~d~~~~~ 143 (256)
++.+|||..||+|..+...+. .+..+|+++|+|+.+++.++++++.++. .+ .+.+.|+....
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~-~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTI-VINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEE-EEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCcccccccccccccccccee-Eeehhhhhhhh
Confidence 578999999999999996554 4666999999999999999999875531 12 34455554333
Q ss_pred CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 144 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 144 ~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
...+ ..||+|...-. .....+++.+.+.++.||.+.++
T Consensus 124 ~~~~-~~fDvIDiDPf------Gs~~pfldsAi~a~~~~Gll~vT 161 (375)
T d2dula1 124 AERH-RYFHFIDLDPF------GSPMEFLDTALRSAKRRGILGVT 161 (375)
T ss_dssp HHST-TCEEEEEECCS------SCCHHHHHHHHHHEEEEEEEEEE
T ss_pred Hhhc-CcCCcccCCCC------CCcHHHHHHHHHHhccCCEEEEE
Confidence 2222 36999988631 11135888889999999999997
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.17 E-value=7e-06 Score=66.97 Aligned_cols=117 Identities=12% Similarity=0.034 Sum_probs=80.9
Q ss_pred hHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--------------CCeEEEEeCCHHHHHHHHHHHHhcCC-
Q psy8370 65 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--------------FDKIDLLEQSSKFIEQAKEEILKDCD- 129 (256)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--------------~~~v~~vD~s~~~~~~a~~~~~~~~~- 129 (256)
..+++..++ .+.++.+|+|.+||+|.+...+.+.. ...++|+|+++.+...|+-++.-++.
T Consensus 150 Iv~~mv~ll----~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~ 225 (425)
T d2okca1 150 LIQAMVDCI----NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG 225 (425)
T ss_dssp HHHHHHHHH----CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred hhHhhheec----cCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc
Confidence 344555555 56678999999999999998775532 12599999999999999988765542
Q ss_pred --CcceEEEccccccCCCCCCCceeEEEechhhhc--------------cC-HHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 130 --KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMF--------------IL-DEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 130 --~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~--------------~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.. .+...|....... ..||+|+++=-+.. .+ ...-..+++.+.+.|++||.+.+..
T Consensus 226 ~~~~-~i~~~d~l~~~~~---~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~ 298 (425)
T d2okca1 226 TDRS-PIVCEDSLEKEPS---TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 298 (425)
T ss_dssp SSCC-SEEECCTTTSCCS---SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccc-eeecCchhhhhcc---cccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence 23 5667776554332 37999998722110 00 0122358999999999999888764
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.16 E-value=1.3e-06 Score=64.98 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=63.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHh----c-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--CCCcee
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAK----H-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--LNIKYD 152 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~----~-~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--~~~~~D 152 (256)
.++.+|||||++.|..+..++.. + ..+++++|+++....... ....++ .++.+|..+..... ....+|
T Consensus 79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~----~~~~~I-~~i~gDs~~~~~~~~l~~~~~d 153 (232)
T d2bm8a1 79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----SDMENI-TLHQGDCSDLTTFEHLREMAHP 153 (232)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----GGCTTE-EEEECCSSCSGGGGGGSSSCSS
T ss_pred hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh----ccccce-eeeecccccHHHHHHHHhcCCC
Confidence 35789999999999877766532 2 238999999875332221 111466 88888865433211 123578
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+.... |.. ...... + .....|++||.+++.+
T Consensus 154 lIfID~~-H~~-~~v~~~-~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 154 LIFIDNA-HAN-TFNIMK-W-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp EEEEESS-CSS-HHHHHH-H-HHHHTCCTTCEEEECS
T ss_pred EEEEcCC-cch-HHHHHH-H-HHhcccCcCCEEEEEc
Confidence 8887654 332 222222 3 3568999999999965
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=0.00019 Score=55.10 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=64.8
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFK 143 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~ 143 (256)
.+...++ ...++.+|||+.+|.|.-+.+++... ...++++|+++.=++..++++...+. ++ .+...|...+.
T Consensus 84 ~l~~~~L----~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~-~~~~~d~~~~~ 158 (293)
T d2b9ea1 84 CLPAMLL----DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCC-ELAEEDFLAVS 158 (293)
T ss_dssp GHHHHHH----CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSE-EEEECCGGGSC
T ss_pred ccccccc----CCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccce-eeeehhhhhhc
Confidence 3444455 56788999999999999888876542 23899999999999999999988773 45 77888887765
Q ss_pred CCCC-CCceeEEEec
Q psy8370 144 PEDL-NIKYDVIWIQ 157 (256)
Q Consensus 144 ~~~~-~~~~D~V~~~ 157 (256)
+... .+.||.|+..
T Consensus 159 ~~~~~~~~fD~VL~D 173 (293)
T d2b9ea1 159 PSDPRYHEVHYILLD 173 (293)
T ss_dssp TTCGGGTTEEEEEEC
T ss_pred ccccccceeeEEeec
Confidence 4321 1369999965
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.93 E-value=3.9e-05 Score=64.16 Aligned_cols=121 Identities=12% Similarity=-0.056 Sum_probs=75.9
Q ss_pred hhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc-------------------CCeEEEEeCCHHHHHHHHHHH
Q psy8370 64 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-------------------FDKIDLLEQSSKFIEQAKEEI 124 (256)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-------------------~~~v~~vD~s~~~~~~a~~~~ 124 (256)
...+++..++ .+.++.+|+|..||+|.++..+.... ...++|+|+++.+...|+-++
T Consensus 151 ~Iv~~mv~ll----~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl 226 (524)
T d2ar0a1 151 PLIKTIIHLL----KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC 226 (524)
T ss_dssp HHHHHHHHHH----CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHH
T ss_pred chhHhhhhcc----cCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 3445555555 56778899999999999987764421 125899999999999998877
Q ss_pred HhcCCCc-----ceEEEccccccCCCCCCCceeEEEechhh--h--------ccCH--HHHHHHHHHHhhhcCCCcEEEE
Q psy8370 125 LKDCDKL-----DKCYNVGIQDFKPEDLNIKYDVIWIQWVL--M--------FILD--EDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 125 ~~~~~~i-----~~~~~~d~~~~~~~~~~~~~D~V~~~~~l--~--------~~~~--~~~~~~l~~~~~~LkpgG~l~i 187 (256)
--++... ..+...+........ ...||+|+++=-+ . ..++ ..-..+++.+.+.|+|||.+.+
T Consensus 227 ~l~~~~~~i~~~~~~~~~~~l~~d~~~-~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~ai 305 (524)
T d2ar0a1 227 LLHDIEGNLDHGGAIRLGNTLGSDGEN-LPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV 305 (524)
T ss_dssp HTTTCCCBGGGTBSEEESCTTSHHHHT-SCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred Hhhcccccccccchhhhhhhhhhcccc-cccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEE
Confidence 6443211 012222222111111 1379999987211 1 0000 1123589999999999999888
Q ss_pred Ee
Q psy8370 188 KD 189 (256)
Q Consensus 188 ~~ 189 (256)
..
T Consensus 306 Il 307 (524)
T d2ar0a1 306 VV 307 (524)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.73 E-value=0.00011 Score=57.38 Aligned_cols=61 Identities=23% Similarity=0.292 Sum_probs=50.7
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 142 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~ 142 (256)
...+.+|||||+|.|.++..+++.+ +.+++++|+++...+..++.+.. .++ .++.+|+..+
T Consensus 41 ~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~--~~~-~ii~~D~l~~ 102 (322)
T d1i4wa_ 41 HPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG--SPL-QILKRDPYDW 102 (322)
T ss_dssp CTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT--SSC-EEECSCTTCH
T ss_pred ccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC--CCc-EEEeCchhhc
Confidence 3467899999999999999998875 45899999999999999887653 466 8888887654
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.68 E-value=3e-05 Score=57.31 Aligned_cols=114 Identities=17% Similarity=0.109 Sum_probs=63.5
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEE-EccccccCCCC
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCY-NVGIQDFKPED 146 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~-~~d~~~~~~~~ 146 (256)
|.++. +.....+..+|+|+|||.|.++..++.+.. ..+.|+++.-...+.-. .....+.++..+. ..|+..++ .
T Consensus 55 l~~~~-~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~-~~~~~~~ni~~~~~~~dv~~l~--~ 130 (257)
T d2p41a1 55 LRWFV-ERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPI-PMSTYGWNLVRLQSGVDVFFIP--P 130 (257)
T ss_dssp HHHHH-HTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCSTTGGGEEEECSCCTTTSC--C
T ss_pred HHHHH-HhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCc-cccccccccccchhhhhHHhcC--C
Confidence 34444 233567888999999999999999876642 26778777422100000 0000001121222 22232222 2
Q ss_pred CCCceeEEEechhhhccCH----HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 147 LNIKYDVIWIQWVLMFILD----EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~----~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
..+|+|+|...-..-+. ......++-+.+.|+|||.|++-
T Consensus 131 --~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK 174 (257)
T d2p41a1 131 --ERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 174 (257)
T ss_dssp --CCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred --CcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence 37899999854321111 12235667778899999998874
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.66 E-value=9.1e-05 Score=55.20 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=60.8
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC----------CCcceEEEccccccCCCCCCCc
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC----------DKLDKCYNVGIQDFKPEDLNIK 150 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----------~~i~~~~~~d~~~~~~~~~~~~ 150 (256)
...+|||.-||.|..+..++..|+ +|+++|-++.+....+..+.... .++ +++.+|..++..... ++
T Consensus 88 ~~~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri-~li~~Ds~~~L~~~~-~~ 164 (250)
T d2oyra1 88 YLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERL-QLIHASSLTALTDIT-PR 164 (250)
T ss_dssp BCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHE-EEEESCHHHHSTTCS-SC
T ss_pred CCCEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhh-eeecCcHHHHHhccC-CC
Confidence 345899999999999999998887 89999999987766665543211 256 889999877765432 37
Q ss_pred eeEEEechhhhcc
Q psy8370 151 YDVIWIQWVLMFI 163 (256)
Q Consensus 151 ~D~V~~~~~l~~~ 163 (256)
||+|+..=++.+-
T Consensus 165 ~DvIYlDPMFp~~ 177 (250)
T d2oyra1 165 PQVVYLDPMFPHK 177 (250)
T ss_dssp CSEEEECCCCCCC
T ss_pred CCEEEECCCCccc
Confidence 9999998776543
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.55 E-value=0.0008 Score=52.74 Aligned_cols=147 Identities=12% Similarity=0.034 Sum_probs=91.7
Q ss_pred CCCCeEEEEcCCCCHhHHHHHH-------h-------c-CC--eEEEEeCCHHHHHHHHHHHHhcCC---C-cceEEEcc
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLA-------K-------H-FD--KIDLLEQSSKFIEQAKEEILKDCD---K-LDKCYNVG 138 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~-------~-------~-~~--~v~~vD~s~~~~~~a~~~~~~~~~---~-i~~~~~~d 138 (256)
+..-+|.|+||.+|..+..+.. . . .+ +|..-|....--...-+.+..... + .+.-+.++
T Consensus 50 ~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGS 129 (359)
T d1m6ex_ 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCc
Confidence 3446799999999987743221 1 1 11 677788776544444333322221 1 11335566
Q ss_pred ccccCCCCCCCceeEEEechhhhccCH-------------------------------HHHHHHHHHHhhhcCCCcEEEE
Q psy8370 139 IQDFKPEDLNIKYDVIWIQWVLMFILD-------------------------------EDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 139 ~~~~~~~~~~~~~D~V~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~l~i 187 (256)
+-+-..+.. +.|++++..++||++. .++..+|+.=++-|+|||.+++
T Consensus 130 FY~rLfP~~--Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl 207 (359)
T d1m6ex_ 130 FYGRLFPRN--TLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL 207 (359)
T ss_dssp SSSCCSCTT--CBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred hhhhcCCCC--ceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 666666666 8999999999999742 1466788888999999999999
Q ss_pred EecccCCCCcc-----------------------------ccCCCCceeeCHHHHHHHHHhcC-CcEEEee
Q psy8370 188 KDNVASGVKNE-----------------------------YDDEDSSVVRSLPQFCLLFSKAN-LKCVKSE 228 (256)
Q Consensus 188 ~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~l~~~g-f~~~~~~ 228 (256)
+.......... ....-..+..+.+|+...+++.| |++...+
T Consensus 208 ~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e 278 (359)
T d1m6ex_ 208 TILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp EEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred EEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeE
Confidence 75443321110 00012234569999999998865 6666554
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.36 E-value=6.8e-05 Score=52.76 Aligned_cols=99 Identities=16% Similarity=0.103 Sum_probs=61.8
Q ss_pred CCCCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc-cccccCCCCCCCceeE
Q psy8370 77 KSDPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GIQDFKPEDLNIKYDV 153 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~-d~~~~~~~~~~~~~D~ 153 (256)
.+..++.+||-+|+| .|.++..+++. |+ +|+++|.++.-++.+++.-. . .++.. +..+..... .+.+|+
T Consensus 23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa----~--~~i~~~~~~~~~~~~-~~~~d~ 94 (168)
T d1piwa2 23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGA----D--HYIATLEEGDWGEKY-FDTFDL 94 (168)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTC----S--EEEEGGGTSCHHHHS-CSCEEE
T ss_pred hCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCC----c--EEeeccchHHHHHhh-hcccce
Confidence 357889999999998 66677776644 55 89999999998888876421 1 22221 111111111 236998
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|+....-.+- ..+..+.+.|+|+|.+++..
T Consensus 95 vi~~~~~~~~------~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 95 IVVCASSLTD------IDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp EEECCSCSTT------CCTTTGGGGEEEEEEEEECC
T ss_pred EEEEecCCcc------chHHHHHHHhhccceEEEec
Confidence 8865321110 12334678999999999864
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.18 E-value=0.00088 Score=46.82 Aligned_cols=98 Identities=18% Similarity=0.046 Sum_probs=62.7
Q ss_pred CCCCCCeEEEEcCC-CCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC--------CCCC
Q psy8370 78 SDPGKTRVLDVGAG-IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP--------EDLN 148 (256)
Q Consensus 78 ~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~--------~~~~ 148 (256)
+..++.+||-+||| .|.++..++.....+|+++|.++.-++.+++.-.. ..+..+...... ....
T Consensus 23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~------~~~~~~~~~~~~~~~~~~~~~~~g 96 (170)
T d1e3ja2 23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD------VTLVVDPAKEEESSIIERIRSAIG 96 (170)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS------EEEECCTTTSCHHHHHHHHHHHSS
T ss_pred CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCc------EEEeccccccccchhhhhhhcccc
Confidence 56788999999988 55666666554334999999999988888774221 122212111100 0001
Q ss_pred CceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 149 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+.+|+|+-...- ...++.+.+.++|+|.+++.-
T Consensus 97 ~g~D~vid~~g~--------~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 97 DLPNVTIDCSGN--------EKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp SCCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECS
T ss_pred cCCceeeecCCC--------hHHHHHHHHHHhcCCceEEEe
Confidence 358998865321 246777889999999999863
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.17 E-value=9.7e-05 Score=52.27 Aligned_cols=100 Identities=16% Similarity=0.011 Sum_probs=64.5
Q ss_pred cCCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc---cccccC-CCCCCC
Q psy8370 76 KKSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV---GIQDFK-PEDLNI 149 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~---d~~~~~-~~~~~~ 149 (256)
..+..++.+||=+|||. |..+..+++. |+.+|+++|.++.-++.+++.-.. .++.. +..+.. ...+..
T Consensus 22 ~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~------~~i~~~~~~~~~~v~~~t~g~ 95 (174)
T d1jqba2 22 LADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGAT------DILNYKNGHIEDQVMKLTNGK 95 (174)
T ss_dssp HTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCS------EEECGGGSCHHHHHHHHTTTS
T ss_pred HhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCcc------ccccccchhHHHHHHHHhhcc
Confidence 34678899999999986 7777777665 455899999999888888754111 22211 111100 000112
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+|+|+-...- ...++.+.+.++|+|.+++.-
T Consensus 96 G~D~vid~~g~--------~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 96 GVDRVIMAGGG--------SETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp CEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECC
T ss_pred CcceEEEccCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence 59998875321 135667789999999999964
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=97.12 E-value=0.0064 Score=46.91 Aligned_cols=151 Identities=12% Similarity=0.057 Sum_probs=93.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
..+.+|+|+-||-|.+...+-..|+.-+.++|+++.+++..+.++.. ...+|+.+.....- ..+|+++...-
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~-------~~~~Di~~~~~~~~-~~~Dll~ggpP 80 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE-------KPEGDITQVNEKTI-PDHDILCAGFP 80 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC-------CCBSCGGGSCGGGS-CCCSEEEEECC
T ss_pred CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC-------CCcCchhcCchhhc-ceeeeeecccc
Confidence 35689999999999999999888886777899999999988877632 23467777654332 36899986521
Q ss_pred hhc---------c--CHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 160 LMF---------I--LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 160 l~~---------~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
+.. . +...+-..+-++.+.++|. +++.++....... ......+.+.+.|++.||.+....
T Consensus 81 Cq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~--~~~lENV~~~~~~-------~~~~~~~~i~~~l~~lGY~~~~~v 151 (327)
T d2c7pa1 81 CQAFSISGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKNFASH-------DNGNTLEVVKNTMNELDYSFHAKV 151 (327)
T ss_dssp CTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGGGGTG-------GGGHHHHHHHHHHHHTTBCCEEEE
T ss_pred cchhhhhhhhcCCcccchhHHHHHHHHHhccCCc--EEecccchhhhhh-------ccchhhHHhhhHHHhcCCcceeeE
Confidence 111 1 1111222233444567885 3444443332110 111234677889999999876433
Q ss_pred e---ecCCCCcceeeeEEEecc
Q psy8370 229 K---VTGMPKSLFKIYMFALKP 247 (256)
Q Consensus 229 ~---~~~~~~~~~~~~~~~l~~ 247 (256)
. ..+.|..--.+++.+.+.
T Consensus 152 l~a~~~GvPQ~R~R~fivg~r~ 173 (327)
T d2c7pa1 152 LNALDYGIPQKRERIYMICFRN 173 (327)
T ss_dssp EEGGGGTCSBCCEEEEEEEEBG
T ss_pred ecHHHcCCCchhhhheeeeecc
Confidence 2 355576666677766554
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.05 E-value=0.00016 Score=52.08 Aligned_cols=107 Identities=14% Similarity=-0.040 Sum_probs=66.2
Q ss_pred CCCCCCCeEEEEcCCC-CHhHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEE---EccccccC-CCCCCCc
Q psy8370 77 KSDPGKTRVLDVGAGI-GRISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY---NVGIQDFK-PEDLNIK 150 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~---~~d~~~~~-~~~~~~~ 150 (256)
....++.+||-+|||. |..+..++. .+..+|+++|.++.-++.+++.-.. ..+ ..|+.+.. .......
T Consensus 21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~------~~~~~~~~~~~~~i~~~t~g~g 94 (195)
T d1kola2 21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE------IADLSLDTPLHEQIAALLGEPE 94 (195)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE------EEETTSSSCHHHHHHHHHSSSC
T ss_pred hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcccc------EEEeCCCcCHHHHHHHHhCCCC
Confidence 4678899999999997 556666654 3666999999999988888765211 111 11111100 0001125
Q ss_pred eeEEEechhhh-------ccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 151 YDVIWIQWVLM-------FILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 151 ~D~V~~~~~l~-------~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+++-..... ..........++.+.+.++|+|.+.+.-
T Consensus 95 ~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 95 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred cEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 89998553211 0100112368899999999999999864
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.00 E-value=0.00013 Score=51.93 Aligned_cols=100 Identities=14% Similarity=0.063 Sum_probs=63.1
Q ss_pred cCCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE---cccccc----CCCC
Q psy8370 76 KKSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN---VGIQDF----KPED 146 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~---~d~~~~----~~~~ 146 (256)
.....++.+||-+|+|. |.++..++.. |+.+|+++|.++.-++.+++.-. . .++. .+..+. ....
T Consensus 23 ~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa----~--~vi~~~~~~~~~~~~~i~~~~ 96 (182)
T d1vj0a2 23 YPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA----D--LTLNRRETSVEERRKAIMDIT 96 (182)
T ss_dssp CSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC----S--EEEETTTSCHHHHHHHHHHHT
T ss_pred HhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccc----e--EEEeccccchHHHHHHHHHhh
Confidence 34567889999999973 6666666655 55589999999999888876411 1 1221 111111 0000
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
....+|+|+-...- ...++.+.+.|+|||.+++..
T Consensus 97 ~~~g~Dvvid~vG~--------~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 97 HGRGADFILEATGD--------SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp TTSCEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECC
T ss_pred CCCCceEEeecCCc--------hhHHHHHHHHhcCCCEEEEEe
Confidence 11259998865321 135677889999999998764
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.89 E-value=0.00029 Score=49.68 Aligned_cols=101 Identities=13% Similarity=-0.053 Sum_probs=65.6
Q ss_pred ccCCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc-----CCCCC
Q psy8370 75 QKKSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF-----KPEDL 147 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~-----~~~~~ 147 (256)
+.....++.+|+=+|||. |.++..+++. |+..|+++|.+++-++.+++.-.. ..+...-.+. .....
T Consensus 22 ~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~------~~i~~~~~~~~~~~~~~~~~ 95 (174)
T d1e3ia2 22 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT------DCLNPRELDKPVQDVITELT 95 (174)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS------EEECGGGCSSCHHHHHHHHH
T ss_pred HhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCC------cccCCccchhhhhhhHhhhh
Confidence 345678899999999987 7777777665 555899999999877777764211 2221111110 00000
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCC-cEEEEEe
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKN-GIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 189 (256)
.+.+|+|+-... ....++...+.++++ |.+++.-
T Consensus 96 ~~G~d~vie~~G--------~~~~~~~a~~~~~~g~G~~v~vG 130 (174)
T d1e3ia2 96 AGGVDYSLDCAG--------TAQTLKAAVDCTVLGWGSCTVVG 130 (174)
T ss_dssp TSCBSEEEESSC--------CHHHHHHHHHTBCTTTCEEEECC
T ss_pred cCCCcEEEEecc--------cchHHHHHHHHhhcCCeEEEecC
Confidence 236899986532 135788889999996 9998863
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.82 E-value=0.01 Score=40.87 Aligned_cols=87 Identities=14% Similarity=0.055 Sum_probs=58.1
Q ss_pred eEEEEcCC--CCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhh
Q psy8370 84 RVLDVGAG--IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 161 (256)
Q Consensus 84 ~vLDiG~G--~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~ 161 (256)
+|.=||+| -+.++..+.+.|+ +|+++|.+++.++.+++. + .+ .....+.... . ..|+|+..
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~----~-~~-~~~~~~~~~~----~--~~DiIila---- 64 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVER----Q-LV-DEAGQDLSLL----Q--TAKIIFLC---- 64 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT----T-SC-SEEESCGGGG----T--TCSEEEEC----
T ss_pred EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHh----h-cc-ceeeeecccc----c--cccccccc----
Confidence 57778887 3346667767777 899999999887776553 1 12 2222232221 2 57998864
Q ss_pred ccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 162 FILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 162 ~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+|......+++++...++++..++-.
T Consensus 65 -vp~~~~~~vl~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 65 -TPIQLILPTLEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp -SCHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred -CcHhhhhhhhhhhhhhcccccceeec
Confidence 35566778999999999988766543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.72 E-value=0.014 Score=40.31 Aligned_cols=90 Identities=19% Similarity=0.191 Sum_probs=58.9
Q ss_pred eEEEEcCCC--CHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhh
Q psy8370 84 RVLDVGAGI--GRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 160 (256)
Q Consensus 84 ~vLDiG~G~--G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l 160 (256)
+|+=||||. |.++..|.+.++. +|+++|.+++.++.+++.- .+ .....+...... . ..|+|+..
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~-----~~-~~~~~~~~~~~~--~--~~dlIila--- 69 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG-----II-DEGTTSIAKVED--F--SPDFVMLS--- 69 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT-----SC-SEEESCGGGGGG--T--CCSEEEEC---
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh-----cc-hhhhhhhhhhhc--c--cccccccc---
Confidence 578899984 3456666666654 8999999999988887641 12 222223222221 1 46988876
Q ss_pred hccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 161 MFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.|.......++++...++++..++-+
T Consensus 70 --~p~~~~~~vl~~l~~~~~~~~ii~d~ 95 (171)
T d2g5ca2 70 --SPVRTFREIAKKLSYILSEDATVTDQ 95 (171)
T ss_dssp --SCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred --CCchhhhhhhhhhhcccccccccccc
Confidence 34455667888999999988766543
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=96.68 E-value=0.0069 Score=47.69 Aligned_cols=80 Identities=14% Similarity=0.233 Sum_probs=50.8
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhc------CC--eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCC
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKH------FD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN 148 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~------~~--~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~ 148 (256)
...+++.+|+|+|+|+|.++..++... .. +++.+|.|+.+.+.-++.+.... ++ .+ ..++.+.+.
T Consensus 75 ~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~~-~i-~w-~~~~~~~~~---- 147 (365)
T d1zkda1 75 ADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIR-NI-HW-HDSFEDVPE---- 147 (365)
T ss_dssp TTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCS-SE-EE-ESSGGGSCC----
T ss_pred hCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcccc-cc-ee-ccChhhccc----
Confidence 345566789999999999988775532 11 68999999997777766654321 22 22 234443321
Q ss_pred CceeEEEechhhhccC
Q psy8370 149 IKYDVIWIQWVLMFIL 164 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~ 164 (256)
..-+|+++..+..+|
T Consensus 148 -~~g~iiaNE~fDAlP 162 (365)
T d1zkda1 148 -GPAVILANEYFDVLP 162 (365)
T ss_dssp -SSEEEEEESSGGGSC
T ss_pred -CCeEEEecccCcccc
Confidence 235677776666664
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.55 E-value=0.0039 Score=46.24 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=44.7
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEIL 125 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~ 125 (256)
.++.+++ +.. ..++..|||.=||+|..+..+.+.+- +.+|+|++++..+.|+++++
T Consensus 200 ~L~~~lI-~~~-s~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 200 DLIERII-RAS-SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHH-HHH-CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred hHHHHHH-HHh-CCCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence 4455544 221 36789999999999999998766664 99999999999999999875
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.55 E-value=0.003 Score=44.03 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=62.1
Q ss_pred CCCCCCeEEEEcCCCC-HhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC------CCCCC
Q psy8370 78 SDPGKTRVLDVGAGIG-RISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP------EDLNI 149 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G-~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~------~~~~~ 149 (256)
+..++.+|+=+|+|.. .++..++.. |+.+|+++|.++.-++.+++.-.. .....+-.+... .....
T Consensus 23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~------~~~~~~~~~~~~~~~~~~~~~g~ 96 (171)
T d1pl8a2 23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD------LVLQISKESPQEIARKVEGQLGC 96 (171)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS------EEEECSSCCHHHHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCc------ccccccccccccccccccccCCC
Confidence 5678899999999754 444444443 565899999999988888764111 222221111100 00013
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+|+|+.... -...++.+.+.+++||.+++.-
T Consensus 97 g~Dvvid~~G--------~~~~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 97 KPEVTIECTG--------AEASIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp CCSEEEECSC--------CHHHHHHHHHHSCTTCEEEECS
T ss_pred CceEEEeccC--------CchhHHHHHHHhcCCCEEEEEe
Confidence 5899887532 1257788899999999999863
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.55 E-value=0.0011 Score=45.74 Aligned_cols=100 Identities=7% Similarity=0.045 Sum_probs=65.5
Q ss_pred CCCCeEEEEcCCC-CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
-++.+|+-||+|. |..+...+.+...+|+++|.++..++..+..+.. ++ .....+-..+...-. ..|+|+...
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~---~~-~~~~~~~~~l~~~~~--~aDivI~aa 103 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS---RV-ELLYSNSAEIETAVA--EADLLIGAV 103 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG---GS-EEEECCHHHHHHHHH--TCSEEEECC
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc---cc-eeehhhhhhHHHhhc--cCcEEEEee
Confidence 4679999999995 5566666555445999999999998888877654 33 444444333322222 589999875
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
.+---+.+ .-+-+++.+.+|||..++=
T Consensus 104 lipG~~aP--~lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 104 LVPGRRAP--ILVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp CCTTSSCC--CCBCHHHHTTSCTTCEEEE
T ss_pred ecCCcccC--eeecHHHHhhcCCCcEEEE
Confidence 53322111 1244567899999987764
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.50 E-value=0.0032 Score=43.76 Aligned_cols=99 Identities=20% Similarity=0.117 Sum_probs=62.5
Q ss_pred CCCCCCCeEEEEcCC--CCHhHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC----CCCCCC
Q psy8370 77 KSDPGKTRVLDVGAG--IGRISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK----PEDLNI 149 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G--~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~----~~~~~~ 149 (256)
.+..++.+||=+||+ .|..+..++. .+...|+++|.++.-++.+++.-. . ..+..+-.+.. .....+
T Consensus 23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga----~--~~i~~~~~~~~~~~~~~~~~~ 96 (170)
T d1jvba2 23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA----D--YVINASMQDPLAEIRRITESK 96 (170)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC----S--EEEETTTSCHHHHHHHHTTTS
T ss_pred hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC----c--eeeccCCcCHHHHHHHHhhcc
Confidence 457888999999973 4455555444 466699999999988888776411 1 22222211110 001123
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+|+|+....- ...++.+.+.++|+|.+++.-
T Consensus 97 ~~d~vid~~g~--------~~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 97 GVDAVIDLNNS--------EKTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp CEEEEEESCCC--------HHHHTTGGGGEEEEEEEEECC
T ss_pred cchhhhccccc--------chHHHhhhhhcccCCEEEEec
Confidence 69999875321 246667789999999999863
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.43 E-value=0.0017 Score=45.42 Aligned_cols=97 Identities=14% Similarity=-0.010 Sum_probs=60.9
Q ss_pred CCCCCeEEEEcCCCC-HhHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccc---cccCCCCCCCceeE
Q psy8370 79 DPGKTRVLDVGAGIG-RISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI---QDFKPEDLNIKYDV 153 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G-~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~---~~~~~~~~~~~~D~ 153 (256)
..++.+||-+|+|.. ..+..++. .+...++++|.++.-++.+++.-.. .++..+- ...........+|+
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~------~~i~~~~~~~~~~~~~~~~~g~d~ 103 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGAD------HVVDARRDPVKQVMELTRGRGVNV 103 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCS------EEEETTSCHHHHHHHHTTTCCEEE
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccc------eeecCcccHHHHHHHhhCCCCceE
Confidence 467899999999754 34445544 4666899999999877777754211 2332211 11111011125999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|+....- ...++...+.++++|.+++.-
T Consensus 104 vid~~g~--------~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 104 AMDFVGS--------QATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp EEESSCC--------HHHHHHGGGGEEEEEEEEECC
T ss_pred EEEecCc--------chHHHHHHHHHhCCCEEEEEe
Confidence 8876331 246778899999999999864
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.38 E-value=0.0059 Score=42.63 Aligned_cols=101 Identities=15% Similarity=-0.049 Sum_probs=63.7
Q ss_pred ccCCCCCCCeEEEEcCCCC-HhHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC---CCCCC
Q psy8370 75 QKKSDPGKTRVLDVGAGIG-RISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP---EDLNI 149 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G-~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~---~~~~~ 149 (256)
+..+..++.+||-+|||.- ..+..++. .+...++++|.++.-++.+++.-. . .++..+-.+... ....+
T Consensus 22 ~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga-----~-~~i~~~~~~~~~~i~~~t~g 95 (174)
T d1f8fa2 22 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA-----T-HVINSKTQDPVAAIKEITDG 95 (174)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC-----S-EEEETTTSCHHHHHHHHTTS
T ss_pred HhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC-----e-EEEeCCCcCHHHHHHHHcCC
Confidence 4456788999999999743 34444443 366688899999988888876411 1 333222111110 00123
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+|+|+-... ....++.+.+.++|+|.+++.-
T Consensus 96 g~D~vid~~G--------~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 96 GVNFALESTG--------SPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp CEEEEEECSC--------CHHHHHHHHHTEEEEEEEEECC
T ss_pred CCcEEEEcCC--------cHHHHHHHHhcccCceEEEEEe
Confidence 6999986532 1246777889999999999853
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.35 E-value=0.003 Score=48.50 Aligned_cols=57 Identities=11% Similarity=0.059 Sum_probs=45.6
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK 126 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~ 126 (256)
.++.+++ +.. ..++..|||.-||+|..+..+.+.|- +.+|+|++++.++.+++++..
T Consensus 238 ~L~~rlI-~~~-s~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 238 KLPEFFI-RML-TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp HHHHHHH-HHH-CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSC
T ss_pred HHHHHhh-hhc-ccCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHh
Confidence 4455555 221 46789999999999999999877775 999999999999999988654
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.28 E-value=0.0088 Score=41.64 Aligned_cols=99 Identities=16% Similarity=0.021 Sum_probs=62.3
Q ss_pred ccCCCCCCCeEEEEcC--CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc---cccccC-CCCCC
Q psy8370 75 QKKSDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV---GIQDFK-PEDLN 148 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~---d~~~~~-~~~~~ 148 (256)
+..+..++.+||-.|+ |.|..+..++.....++++++.+++-.+.+++. + ...++.. |+.+.. .....
T Consensus 22 ~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~----G--a~~vi~~~~~~~~~~i~~~t~~ 95 (174)
T d1yb5a2 22 HSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN----G--AHEVFNHREVNYIDKIKKYVGE 95 (174)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----T--CSEEEETTSTTHHHHHHHHHCT
T ss_pred HHhCCCCCCEEEEEeccccccccccccccccCccccccccccccccccccc----C--cccccccccccHHHHhhhhhcc
Confidence 3446778999999996 466777777665434899999888777776643 2 1122211 111110 00012
Q ss_pred CceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 149 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
..+|+|+.... ...++...+.|+|+|.++..
T Consensus 96 ~g~d~v~d~~g---------~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 96 KGIDIIIEMLA---------NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp TCEEEEEESCH---------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCceEEeeccc---------HHHHHHHHhccCCCCEEEEE
Confidence 36999997643 13567778999999999986
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=96.28 E-value=0.0061 Score=46.81 Aligned_cols=149 Identities=12% Similarity=0.077 Sum_probs=92.3
Q ss_pred CeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhhc
Q psy8370 83 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMF 162 (256)
Q Consensus 83 ~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~ 162 (256)
.+|+|+=||.|.+...+-..|+.-+.++|+++.+.+.-+.++. - .+..+|+.++....- +.+|+++...-...
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~-----~-~~~~~Di~~~~~~~~-~~~dll~~g~PCq~ 73 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-----A-KLIKGDISKISSDEF-PKCDGIIGGPPCQS 73 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC-----S-EEEESCTTTSCGGGS-CCCSEEEECCCCTT
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-----C-CCccCChhhCCHhHc-ccccEEeecccccc
Confidence 3799999999999999877798677799999998887776643 2 567889988765433 36899986522111
Q ss_pred c--------CHHHHHHH---HHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee--
Q psy8370 163 I--------LDEDIIKF---LNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK-- 229 (256)
Q Consensus 163 ~--------~~~~~~~~---l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~-- 229 (256)
+ ..+....+ +-++.+.++|. +++.++....... ........+...+...||.+.....
T Consensus 74 fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk--~~~lENV~~~~~~-------~~~~~~~~~l~~l~~lGY~v~~~vlna 144 (324)
T d1dcta_ 74 WSEGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKGMMAQ-------RHNKAVQEFIQEFDNAGYDVHIILLNA 144 (324)
T ss_dssp TSSSSCCCCSSSHHHHHHHHHHHHHHHHCCS--EEEEEEEGGGGSG-------GGHHHHHHHHHHHHHHHEEEEEEEEEG
T ss_pred cccccccccccccccchHHHHHHHHHhhCCc--eeecccccccccc-------ccchhhHHHHhHHhhCCCccceeeeec
Confidence 1 01122222 22345566884 4444443322111 1112345566777788988765433
Q ss_pred -ecCCCCcceeeeEEEecc
Q psy8370 230 -VTGMPKSLFKIYMFALKP 247 (256)
Q Consensus 230 -~~~~~~~~~~~~~~~l~~ 247 (256)
..+.|..--.+++.+.+.
T Consensus 145 ~~~GvPQ~R~R~fiv~~r~ 163 (324)
T d1dcta_ 145 NDYGVAQDRKRVFYIGFRK 163 (324)
T ss_dssp GGGTCSBCCEEEEEEEEEG
T ss_pred ccccCchhhceeeEeeecC
Confidence 355677666777777654
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.20 E-value=0.0072 Score=45.35 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=46.8
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD 127 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 127 (256)
+++.+++ +. ...++..|||.-||+|..+..+...+- +.+|+|+++...+.+++++...
T Consensus 195 ~L~~~~I-~~-~s~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 195 AVIERLV-RA-LSHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHHH-HH-HSCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred hHHHHHH-Hh-hcCCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 4455555 22 136789999999999999998866665 9999999999999999998754
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.17 E-value=0.0053 Score=42.42 Aligned_cols=96 Identities=13% Similarity=0.024 Sum_probs=58.0
Q ss_pred CCCCCCeEEEEcCCC-CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC---CCCCCCceeE
Q psy8370 78 SDPGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK---PEDLNIKYDV 153 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~---~~~~~~~~D~ 153 (256)
+..++.+||-+|+|. |..+..+++....+|+++|.++.-++.+++.-. . .++..+-.+.. .....+..|.
T Consensus 24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga-----~-~~i~~~~~~~~~~~~~~~~g~~~~ 97 (166)
T d1llua2 24 NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA-----S-LTVNARQEDPVEAIQRDIGGAHGV 97 (166)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC-----S-EEEETTTSCHHHHHHHHHSSEEEE
T ss_pred CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc-----c-ccccccchhHHHHHHHhhcCCccc
Confidence 467889999999874 455555555433499999999988887765311 1 22322211110 0001123455
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|.+... ...++.+.+.|+|+|.+++.
T Consensus 98 i~~~~~---------~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 98 LVTAVS---------NSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp EECCSC---------HHHHHHHHTTEEEEEEEEEC
T ss_pred cccccc---------chHHHHHHHHhcCCcEEEEE
Confidence 554332 24567788999999999985
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.10 E-value=0.041 Score=42.32 Aligned_cols=150 Identities=14% Similarity=0.149 Sum_probs=89.2
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC-CCceeEEEech
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-NIKYDVIWIQW 158 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-~~~~D~V~~~~ 158 (256)
+.+|+|+-||.|.+...+-+.|.. -+.++|+++.+.+..+.++. .. .++..|+.+.....- .+.+|+++...
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~----~~-~~~~~di~~~~~~~~~~~~~Dll~ggp 76 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP----HT-QLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT----TS-CEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC----CC-CcccCchhhCCHhHcCCCCccEEEeec
Confidence 568999999999998888667764 46789999998887776643 23 567778776653211 12589998653
Q ss_pred hhhccCH--------HHHHHHHHHHhhh---c--CCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEE
Q psy8370 159 VLMFILD--------EDIIKFLNLCKQI---L--NKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 225 (256)
Q Consensus 159 ~l~~~~~--------~~~~~~l~~~~~~---L--kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~ 225 (256)
-+..++. +....++.++.++ + +|. +++.++...... ....+.+.+.|++.||.+.
T Consensus 77 PCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk--~~i~ENV~~l~~----------~~~~~~i~~~l~~~GY~v~ 144 (343)
T d1g55a_ 77 PCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGFEV----------SSTRDLLIQTIENCGFQYQ 144 (343)
T ss_dssp C------------------CHHHHHHHHGGGCSSCCS--EEEEEEETTGGG----------SHHHHHHHHHHHHTTEEEE
T ss_pred ccccccccccccccccccccccchhhhhHhhhcCCCc--eeeeeccCCccc----------chhhHHHHhhhhccccccc
Confidence 2222111 2222344444443 3 464 444455443321 1124678889999999886
Q ss_pred Eeee---ecCCCCcceeeeEEEeccC
Q psy8370 226 KSEK---VTGMPKSLFKIYMFALKPN 248 (256)
Q Consensus 226 ~~~~---~~~~~~~~~~~~~~~l~~~ 248 (256)
.... .++.|..--.+++.+.+..
T Consensus 145 ~~vlna~dyGvPQ~R~Rvfivg~r~~ 170 (343)
T d1g55a_ 145 EFLLSPTSLGIPNSRLRYFLIAKLQS 170 (343)
T ss_dssp EEEECGGGGTCSCCCCEEEEEEEESS
T ss_pred eeeeeccccCCcccceeEEEEEEeCC
Confidence 5332 3555766666777665543
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=96.03 E-value=0.039 Score=40.56 Aligned_cols=124 Identities=12% Similarity=0.080 Sum_probs=79.4
Q ss_pred hHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC----------------------------------------
Q psy8370 65 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF---------------------------------------- 104 (256)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~---------------------------------------- 104 (256)
....+...+ .......+..++|--||+|.+.++.+....
T Consensus 35 aa~il~~al-~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~ 113 (249)
T d1o9ga_ 35 ATEIFQRAL-ARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERRE 113 (249)
T ss_dssp HHHHHHHHH-HTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-hhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccc
Confidence 445566555 344556677899999999999888654210
Q ss_pred -CeEEEEeCCHHHHHHHH---HHHHhcC--CCcceEEEccccccCCCC---CCCceeEEEech--h--hh---ccCHHHH
Q psy8370 105 -DKIDLLEQSSKFIEQAK---EEILKDC--DKLDKCYNVGIQDFKPED---LNIKYDVIWIQW--V--LM---FILDEDI 168 (256)
Q Consensus 105 -~~v~~vD~s~~~~~~a~---~~~~~~~--~~i~~~~~~d~~~~~~~~---~~~~~D~V~~~~--~--l~---~~~~~~~ 168 (256)
..++|.|+++.+++.++ ++....+ ..+ .+...|+.+..+.. .....++|+++= . +. ....+.+
T Consensus 114 ~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i-~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~ 192 (249)
T d1o9ga_ 114 QSERFGKPSYLEAAQAARRLRERLTAEGGALPC-AIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPV 192 (249)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCE-EEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHH
T ss_pred cCCccccccCHHHHHHHHHHHHHHHHcCCCcee-eeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHH
Confidence 13567888888888874 4555544 334 77788876544311 012578999982 1 11 1233456
Q ss_pred HHHHHHHhhhcCCCcEEEEEec
Q psy8370 169 IKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 169 ~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
..+...+.+++.....++++..
T Consensus 193 ~~~~~~l~~~~p~~s~~~it~~ 214 (249)
T d1o9ga_ 193 AGLLRSLASALPAHAVIAVTDR 214 (249)
T ss_dssp HHHHHHHHHHSCTTCEEEEEES
T ss_pred HHHHHHHHccCCCCcEEEEeCc
Confidence 7788889999977777777653
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.00 E-value=0.1 Score=40.07 Aligned_cols=118 Identities=12% Similarity=0.170 Sum_probs=74.4
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCC-HHHHHHHHHHHHhc------------------
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQS-SKFIEQAKEEILKD------------------ 127 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~~~------------------ 127 (256)
+.+.+++ ...+...|+-+|||.=.....+..... .+..+|++ |+.++.-++.+...
T Consensus 86 ~~v~~Fl----~~~~~~QVV~LGaG~DTr~~Rl~~~~~-~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~ 160 (328)
T d1rjda_ 86 AAILEFL----VANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSP 160 (328)
T ss_dssp HHHHHHH----HHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTT
T ss_pred HHHHHHH----HHCCCcEEEEeCCccchHHHHhhccCC-CcEEEECCcHHHHHHHHHHHHhchhhhhhcccccccccccc
Confidence 4455555 224557899999999988887765544 56666655 44444333333210
Q ss_pred ----CCCcceEEEccccccCCCC-------CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 128 ----CDKLDKCYNVGIQDFKPED-------LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 128 ----~~~i~~~~~~d~~~~~~~~-------~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
..+. ..+.+|+.+..... +....=++++-.++.+++++...++++.+.+... +|.+++.++.
T Consensus 161 ~~~~s~~y-~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i 233 (328)
T d1rjda_ 161 FLIDQGRY-KLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPI 233 (328)
T ss_dssp EEEECSSE-EEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEEC
T ss_pred ccCCCCCe-EEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccC
Confidence 1233 55677776542110 1123457888899999999998999999988875 5666666654
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.011 Score=40.77 Aligned_cols=97 Identities=18% Similarity=0.098 Sum_probs=60.4
Q ss_pred CCCCCCCeEEEEcCC-CCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc-CCCCCCCceeEE
Q psy8370 77 KSDPGKTRVLDVGAG-IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF-KPEDLNIKYDVI 154 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~-~~~~~~~~~D~V 154 (256)
.+..++.+||=+|+| .|.++..++.....+++++|.+++-.+.+++.-. . .++...-.+. .... ..+|++
T Consensus 26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGa----d--~~i~~~~~~~~~~~~--~~~D~v 97 (168)
T d1uufa2 26 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGA----D--EVVNSRNADEMAAHL--KSFDFI 97 (168)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC----S--EEEETTCHHHHHTTT--TCEEEE
T ss_pred hCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCC----c--EEEECchhhHHHHhc--CCCcee
Confidence 457889999999987 3566666665433377889999887777765311 1 2222221111 1112 369998
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+....-. ..++...+.++++|.+++.-
T Consensus 98 id~~g~~--------~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 98 LNTVAAP--------HNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp EECCSSC--------CCHHHHHTTEEEEEEEEECC
T ss_pred eeeeecc--------hhHHHHHHHHhcCCEEEEec
Confidence 8653311 23456678999999999863
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=95.91 E-value=0.038 Score=41.87 Aligned_cols=105 Identities=9% Similarity=0.079 Sum_probs=70.0
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC----CCcceEEEcccccc-CC--CC---CCC
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC----DKLDKCYNVGIQDF-KP--ED---LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~----~~i~~~~~~d~~~~-~~--~~---~~~ 149 (256)
....|+.+|||.-.-...+ .... -.++=+|. +.+++.-++.+...+ .+. ..+..|+.+. .. .. +..
T Consensus 89 g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~-~~v~~Dl~~~~~~~L~~~g~d~~ 165 (297)
T d2uyoa1 89 GIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADR-REVPIDLRQDWPPALRSAGFDPS 165 (297)
T ss_dssp TCCEEEEETCTTCCHHHHS-CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEE-EEEECCTTSCHHHHHHHTTCCTT
T ss_pred CCCeEEEeCcccCChhhhc-CCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceE-EEecccccchHHHHHHhcCCCCC
Confidence 3456777999987776665 2121 15555563 777777777776543 233 5566666542 10 00 012
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
..=++++-.++.+++.++..++++.+.+...||+.+++.
T Consensus 166 ~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d 204 (297)
T d2uyoa1 166 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE 204 (297)
T ss_dssp SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred CCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 345777778999999999999999999999999998875
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.44 E-value=0.066 Score=39.59 Aligned_cols=77 Identities=16% Similarity=0.057 Sum_probs=56.6
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCC-------
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDL------- 147 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~------- 147 (256)
-+++.+|=.|++.|. .+..|++.|+ +|++++.++..++.+.+.+...+ .++ .++.+|+.+......
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~-~~~~~Dls~~~~v~~~v~~~~~ 85 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTL-IPYRCDLSNEEDILSMFSAIRS 85 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEE-EEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceE-EEEEccCCCHHHHHHHHHHHHH
Confidence 457889999998884 6677777888 89999999998888888777654 345 677889876432111
Q ss_pred -CCceeEEEech
Q psy8370 148 -NIKYDVIWIQW 158 (256)
Q Consensus 148 -~~~~D~V~~~~ 158 (256)
.+..|+++.+.
T Consensus 86 ~~g~iD~lVnnA 97 (257)
T d1xg5a_ 86 QHSGVDICINNA 97 (257)
T ss_dssp HHCCCSEEEECC
T ss_pred hcCCCCEEEecc
Confidence 25789998774
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.36 E-value=0.0051 Score=42.53 Aligned_cols=96 Identities=11% Similarity=0.005 Sum_probs=56.6
Q ss_pred CCCCCCeEEEEcCCCC-HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc---cccccCCCCCCCceeE
Q psy8370 78 SDPGKTRVLDVGAGIG-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV---GIQDFKPEDLNIKYDV 153 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~---d~~~~~~~~~~~~~D~ 153 (256)
+..++.+||=.|+|.- ..+..++.....+|+++|.++.-++.+++. +.. .+... |..........+.+|+
T Consensus 24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~----Ga~--~~~~~~~~~~~~~~~~~~~~~~~~ 97 (168)
T d1rjwa2 24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL----GAD--LVVNPLKEDAAKFMKEKVGGVHAA 97 (168)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TCS--EEECTTTSCHHHHHHHHHSSEEEE
T ss_pred CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc----Ccc--eecccccchhhhhcccccCCCceE
Confidence 4678899999999754 444455444434899999999888777653 211 11111 1111000000123455
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|.+... ...+....+.++|+|.+++.
T Consensus 98 v~~~~~---------~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 98 VVTAVS---------KPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp EESSCC---------HHHHHHHHHHEEEEEEEEEC
T ss_pred EeecCC---------HHHHHHHHHHhccCCceEec
Confidence 544321 24677888999999999986
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=95.30 E-value=0.05 Score=40.32 Aligned_cols=76 Identities=13% Similarity=0.054 Sum_probs=56.6
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC---------C
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL---------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~---------~ 148 (256)
+++++|=.|+..| ..+..+++.|+ +|+.++.+++-++.+.+.+...+.++ .++.+|+.+...... .
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~-~~~~~D~s~~~~~~~~~~~~~~~~~ 82 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNV-EGSVCDLLSRTERDKLMQTVAHVFD 82 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCE-EEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCc-eEEEeecCCHHHHHHHHHHHHHHhC
Confidence 5788998998877 36677777888 89999999998888888887766566 778888866532110 2
Q ss_pred CceeEEEech
Q psy8370 149 IKYDVIWIQW 158 (256)
Q Consensus 149 ~~~D~V~~~~ 158 (256)
+..|+++.+.
T Consensus 83 g~idilinna 92 (258)
T d1ae1a_ 83 GKLNILVNNA 92 (258)
T ss_dssp SCCCEEEECC
T ss_pred CCcEEEeccc
Confidence 4688988763
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.29 E-value=0.012 Score=41.08 Aligned_cols=103 Identities=13% Similarity=0.042 Sum_probs=62.1
Q ss_pred cCCCCCCCeEEEEcC--CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeE
Q psy8370 76 KKSDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
.....++.+||=-|+ |.|.++..+++....+|+++--+++-.+.+++.-.. .+ --+..+..+.....+.+.+|+
T Consensus 26 ~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~---~v-i~~~~~~~~~~~~~~~~gvD~ 101 (176)
T d1xa0a2 26 HGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK---EV-LAREDVMAERIRPLDKQRWAA 101 (176)
T ss_dssp TTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS---EE-EECC---------CCSCCEEE
T ss_pred hCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccc---ee-eecchhHHHHHHHhhccCcCE
Confidence 345667889998885 455778887766444899999888877777654211 11 111111111111111247999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
|+-...- ..+....+.|+|+|.++..-..
T Consensus 102 vid~vgg---------~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 102 AVDPVGG---------RTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp EEECSTT---------TTHHHHHHTEEEEEEEEECSCC
T ss_pred EEEcCCc---------hhHHHHHHHhCCCceEEEeecc
Confidence 8876442 2456678999999999986443
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.26 E-value=0.055 Score=39.95 Aligned_cols=73 Identities=21% Similarity=0.170 Sum_probs=52.8
Q ss_pred eEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CCcee
Q psy8370 84 RVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NIKYD 152 (256)
Q Consensus 84 ~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~~~D 152 (256)
.+|=-|++.|. .+..+++.|+ +|+.+|.+++.++.+.+.+...+.++ ..+.+|+.+...... -+..|
T Consensus 3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~-~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHA-VAVKVDVSDRDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCE-EEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcE-EEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 34666777663 5666777787 89999999999888888887766666 778889876532111 25799
Q ss_pred EEEech
Q psy8370 153 VIWIQW 158 (256)
Q Consensus 153 ~V~~~~ 158 (256)
+++.+.
T Consensus 81 ilVnnA 86 (255)
T d1gega_ 81 VIVNNA 86 (255)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 999763
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=95.22 E-value=0.049 Score=40.39 Aligned_cols=75 Identities=17% Similarity=0.136 Sum_probs=56.5
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
+++++|=.|++.|. .+..|++.|+ +|+.+|.+++.++.+.+.+...+.++ ..+.+|+.+...... .+
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~-~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEA-RSYVCDVTSEEAVIGTVDSVVRDFG 81 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCE-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcE-EEEEccCCCHHHHHHHHHHHHHHhC
Confidence 57888888887774 6677777887 89999999999998888887766666 778888876432110 24
Q ss_pred ceeEEEec
Q psy8370 150 KYDVIWIQ 157 (256)
Q Consensus 150 ~~D~V~~~ 157 (256)
..|+++.+
T Consensus 82 ~iDilVnn 89 (260)
T d1zema1 82 KIDFLFNN 89 (260)
T ss_dssp CCCEEEEC
T ss_pred CCCeehhh
Confidence 78999866
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.11 E-value=0.0098 Score=41.37 Aligned_cols=100 Identities=15% Similarity=0.021 Sum_probs=61.0
Q ss_pred ccCCCCCCCeEEEEcCC-CCHhHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcc-----ccccCCCCC
Q psy8370 75 QKKSDPGKTRVLDVGAG-IGRISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG-----IQDFKPEDL 147 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G-~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d-----~~~~~~~~~ 147 (256)
+..+..++.+||=.||| .|.++..++. .++..|+++|.++.-.+.+++.-.. .++... +........
T Consensus 22 ~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~------~~i~~~~~~~~~~~~~~~~~ 95 (176)
T d2fzwa2 22 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT------ECINPQDFSKPIQEVLIEMT 95 (176)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS------EEECGGGCSSCHHHHHHHHT
T ss_pred HhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc------EEEeCCchhhHHHHHHHHHc
Confidence 34467889999999987 2344554444 3666899999999888888764211 222111 100000001
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.+.+|+|+-...- ...++.+...+++||.+++.
T Consensus 96 ~~g~D~vid~~G~--------~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 96 DGGVDYSFECIGN--------VKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp TSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEE
T ss_pred CCCCcEeeecCCC--------HHHHHHHHHhhcCCceeEEE
Confidence 2368999876331 24667788889998777654
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.08 E-value=0.049 Score=40.00 Aligned_cols=78 Identities=14% Similarity=-0.007 Sum_probs=58.4
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CC
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LN 148 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~ 148 (256)
-.++.+|=-|++.|. ++..+++.|+ +|+.+|.+++-++...+.+...+.++ ..+.+|+.+..... ..
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~-~~~~~Dvs~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKV-HTFVVDCSNREDIYSSAKKVKAEI 82 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCE-EEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcE-EEEEeeCCCHHHHHHHHHHHHHHc
Confidence 346778878888874 7777778888 89999999998888888887766666 78888987763211 13
Q ss_pred CceeEEEechh
Q psy8370 149 IKYDVIWIQWV 159 (256)
Q Consensus 149 ~~~D~V~~~~~ 159 (256)
+..|+++.+..
T Consensus 83 g~idilinnag 93 (244)
T d1yb1a_ 83 GDVSILVNNAG 93 (244)
T ss_dssp CCCSEEEECCC
T ss_pred CCCceeEeecc
Confidence 57899987743
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.07 E-value=0.054 Score=39.92 Aligned_cols=77 Identities=17% Similarity=0.106 Sum_probs=55.3
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CC
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LN 148 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~ 148 (256)
-+++.+|=.|++.|. .+..|++.|+ +|+.+|.+++.++.+.+.++..+.++ ..+..|+.+..... ..
T Consensus 8 lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~-~~~~~Dvt~~~~v~~~~~~~~~~~ 85 (251)
T d2c07a1 8 GENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYES-SGYAGDVSKKEEISEVINKILTEH 85 (251)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCE-EEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcE-EEEEccCCCHHHHHHHHHHHHHhc
Confidence 457778878877662 4555656676 89999999999988888887766566 78888987643211 02
Q ss_pred CceeEEEech
Q psy8370 149 IKYDVIWIQW 158 (256)
Q Consensus 149 ~~~D~V~~~~ 158 (256)
+..|+++.+.
T Consensus 86 g~iDilvnna 95 (251)
T d2c07a1 86 KNVDILVNNA 95 (251)
T ss_dssp SCCCEEEECC
T ss_pred CCceeeeecc
Confidence 5799998764
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=95.06 E-value=0.073 Score=39.30 Aligned_cols=75 Identities=12% Similarity=0.067 Sum_probs=54.2
Q ss_pred CCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CCc
Q psy8370 82 KTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NIK 150 (256)
Q Consensus 82 ~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~~ 150 (256)
++.+|=-|++.|. .+..|++.|+ +|+.+|.+++.++.+.+.+...+.++ ..+.+|+.+...... -++
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~-~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEA-DGRTCDVRSVPEIEALVAAVVERYGP 79 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCE-EEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcE-EEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 3455767776663 6666777787 89999999999888888887766666 788889876532111 257
Q ss_pred eeEEEech
Q psy8370 151 YDVIWIQW 158 (256)
Q Consensus 151 ~D~V~~~~ 158 (256)
.|+++.+.
T Consensus 80 iDilVnnA 87 (257)
T d2rhca1 80 VDVLVNNA 87 (257)
T ss_dssp CSEEEECC
T ss_pred CCEEEecc
Confidence 99999763
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=94.88 E-value=0.077 Score=39.25 Aligned_cols=107 Identities=12% Similarity=0.050 Sum_probs=69.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC---------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED---------LN 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~---------~~ 148 (256)
+++++|=-|++.|. .+..|++.|+ +|+.+|.+++.++.+.+.+...+.+. .++.+|+.+..... -.
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~-~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKV-EASVCDLSSRSERQELMNTVANHFH 84 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEE-EEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCc-eEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 57788888887773 6677777787 89999999999888888887766566 77788886542111 01
Q ss_pred CceeEEEechh------hhccCHHHHHH-----------HHHHHhhhc--CCCcEEEEEe
Q psy8370 149 IKYDVIWIQWV------LMFILDEDIIK-----------FLNLCKQIL--NKNGIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~------l~~~~~~~~~~-----------~l~~~~~~L--kpgG~l~i~~ 189 (256)
+..|+++.+.. +..++.+++.+ +.+.+.+.+ +.+|.++...
T Consensus 85 ~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~is 144 (259)
T d2ae2a_ 85 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFIS 144 (259)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEEC
T ss_pred CCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccc
Confidence 36899997743 23333333322 223444444 4567777653
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=0.04 Score=38.22 Aligned_cols=98 Identities=11% Similarity=-0.047 Sum_probs=62.4
Q ss_pred cCCCCCCCeEEEEcCC--CCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE---ccccccCC-CCCCC
Q psy8370 76 KKSDPGKTRVLDVGAG--IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN---VGIQDFKP-EDLNI 149 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G--~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~---~d~~~~~~-~~~~~ 149 (256)
.....++.+||=.|+| .|..+..+++....+|++++.+++-.+.+++.-.. .++. .|+.+... ..+..
T Consensus 23 ~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~------~vi~~~~~d~~~~v~~~t~g~ 96 (179)
T d1qora2 23 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW------QVINYREEDLVERLKEITGGK 96 (179)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS------EEEETTTSCHHHHHHHHTTTC
T ss_pred HhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCe------EEEECCCCCHHHHHHHHhCCC
Confidence 3456788999988665 46677777766444999999999988888764211 2222 12211110 01123
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.+|+|+....- ..++.....++++|.+++.
T Consensus 97 g~d~v~d~~g~---------~~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 97 KVRVVYDSVGR---------DTWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp CEEEEEECSCG---------GGHHHHHHTEEEEEEEEEC
T ss_pred CeEEEEeCccH---------HHHHHHHHHHhcCCeeeec
Confidence 68998876432 2445678899999998875
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.79 E-value=0.018 Score=40.05 Aligned_cols=101 Identities=14% Similarity=-0.077 Sum_probs=59.8
Q ss_pred ccCCCCCCCeEEEEcCCCC-HhHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccc-----cCCCCC
Q psy8370 75 QKKSDPGKTRVLDVGAGIG-RISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD-----FKPEDL 147 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G-~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~-----~~~~~~ 147 (256)
+.....++.+||-+|||.. ..+..+++ .|+.+|+++|.++.-++.+++.-.. .++...-.+ ......
T Consensus 21 ~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~------~~i~~~~~d~~~~~~~~~~~ 94 (174)
T d1p0fa2 21 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT------ECLNPKDYDKPIYEVICEKT 94 (174)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS------EEECGGGCSSCHHHHHHHHT
T ss_pred HhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCc------EEEcCCCchhHHHHHHHHhc
Confidence 4456788999999999854 34444443 4667999999999988888764211 222111111 000011
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCC-CcEEEEEe
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNK-NGIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~ 189 (256)
.+.+|+|+-...- ...++.....+++ +|.+++.-
T Consensus 95 ~~G~d~vid~~g~--------~~~~~~~~~~~~~~~G~~v~vG 129 (174)
T d1p0fa2 95 NGGVDYAVECAGR--------IETMMNALQSTYCGSGVTVVLG 129 (174)
T ss_dssp TSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECC
T ss_pred CCCCcEEEEcCCC--------chHHHHHHHHHHHhcCceEEEE
Confidence 2358888865321 2355556666654 68888864
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=94.52 E-value=0.17 Score=37.58 Aligned_cols=107 Identities=16% Similarity=0.099 Sum_probs=69.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCC-HHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQS-SKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
+++++|=.|++.|. .+..|++.|+ +|+.++.+ ++.++.+.+.+...+.++ .++..|+.+...-.. .
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~-~~~~~D~~~~~~v~~~~~~~~~~~ 94 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDA-ACVKANVGVVEDIVRMFEEAVKIF 94 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCE-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCce-eeEeCCCCCHHHHHHHHHHHHHHh
Confidence 46888888887773 6777777888 89998876 556666666666666566 778888766421110 2
Q ss_pred CceeEEEechh------hhccCHHH-----------HHHHHHHHhhhcCCCcEEEEEe
Q psy8370 149 IKYDVIWIQWV------LMFILDED-----------IIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~------l~~~~~~~-----------~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+..|+++.+.. ++..+.++ ...+.+.+.+.|+.+|..++..
T Consensus 95 g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 95 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred CCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 47899987633 22233333 2334666778888887777653
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=94.49 E-value=0.052 Score=40.18 Aligned_cols=107 Identities=18% Similarity=0.045 Sum_probs=70.5
Q ss_pred CCCCeEEEEcCCCC---HhHHHHHHhcCCeEEE-EeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------
Q psy8370 80 PGKTRVLDVGAGIG---RISKYLLAKHFDKIDL-LEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 80 ~~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~-vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-------- 147 (256)
-.++++|=.|++.| ..+..|++.|+ +|+. ..-+++..+.+.+.+...+.++ ..+.+|+.+......
T Consensus 4 L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~-~~~~~D~~~~~~v~~~~~~~~~~ 81 (259)
T d1ja9a_ 4 LAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQG-VAIQADISKPSEVVALFDKAVSH 81 (259)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCE-EEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCc-eEecCCCCCHHHHHHHHHHHHHH
Confidence 35778887887766 57777777888 6665 4677887888888888777677 788888875422111
Q ss_pred CCceeEEEechhhh------ccCHHH-----------HHHHHHHHhhhcCCCcEEEEE
Q psy8370 148 NIKYDVIWIQWVLM------FILDED-----------IIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 148 ~~~~D~V~~~~~l~------~~~~~~-----------~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.+..|+++.+.... ..+.++ ...+.+.+...|+.+|.+++.
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii 139 (259)
T d1ja9a_ 82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT 139 (259)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence 24799999774322 222222 234556667777777766665
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.45 E-value=0.055 Score=40.43 Aligned_cols=107 Identities=13% Similarity=0.080 Sum_probs=70.5
Q ss_pred CCeE-EEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 82 KTRV-LDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 82 ~~~v-LDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
+++| |--|++.|. .+..|++.+...|+.++.+++-++.+.+.++..+.++ .++.+|+.+...... .+
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~-~~~~~Dvs~~~sv~~~~~~~~~~~g 80 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSP-RFHQLDIDDLQSIRALRDFLRKEYG 80 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCC-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcE-EEEEEecCCHHHHHHHHHHHHHhcC
Confidence 4667 444555553 4455655533489999999999998888888776677 888999877542111 25
Q ss_pred ceeEEEechhhhcc------CHHH-----------HHHHHHHHhhhcCCCcEEEEEe
Q psy8370 150 KYDVIWIQWVLMFI------LDED-----------IIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 150 ~~D~V~~~~~l~~~------~~~~-----------~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+|+++.+..+... .+++ ...+.+.+...|+++|.++...
T Consensus 81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 79999988543211 1112 2235666788888899887753
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.43 E-value=0.086 Score=38.97 Aligned_cols=77 Identities=12% Similarity=-0.025 Sum_probs=56.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC---------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL---------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~---------~ 148 (256)
+++++|--|++.|. .+..+++.|+ +|+.++.+++.++.+.+.+...+.++ ..+.+|+.+...... .
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQV-TGSVCDASLRPEREKLMQTVSSMFG 84 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCE-EEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCce-EEEeccCCCHHHHHHHHHHHHHHhC
Confidence 57888988888774 6777777888 89999999998888888777665566 778888865432110 1
Q ss_pred CceeEEEechh
Q psy8370 149 IKYDVIWIQWV 159 (256)
Q Consensus 149 ~~~D~V~~~~~ 159 (256)
+..|+++.+..
T Consensus 85 g~idilvnnAG 95 (259)
T d1xq1a_ 85 GKLDILINNLG 95 (259)
T ss_dssp TCCSEEEEECC
T ss_pred CCccccccccc
Confidence 47899998743
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.41 E-value=0.011 Score=41.30 Aligned_cols=99 Identities=18% Similarity=0.004 Sum_probs=60.2
Q ss_pred ccCCCCCCCeEEEEcC--CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc---cccccCCC-CCC
Q psy8370 75 QKKSDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV---GIQDFKPE-DLN 148 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~---d~~~~~~~-~~~ 148 (256)
+..+..++.+||=.|+ |.|..+..++.....+++++.-+++-.+.+++. +.. ..+.. |+.+.... ...
T Consensus 19 ~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~----Ga~--~vi~~~~~~~~~~v~~~t~~ 92 (183)
T d1pqwa_ 19 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL----GVE--YVGDSRSVDFADEILELTDG 92 (183)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT----CCS--EEEETTCSTHHHHHHHHTTT
T ss_pred HHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccc----ccc--ccccCCccCHHHHHHHHhCC
Confidence 3446778899998773 456677777765444888888787766666542 211 22221 12111100 011
Q ss_pred CceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 149 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
..+|+|+.... ...++.+.+.|+++|+++..
T Consensus 93 ~g~d~v~d~~g---------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 93 YGVDVVLNSLA---------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp CCEEEEEECCC---------THHHHHHHHTEEEEEEEEEC
T ss_pred CCEEEEEeccc---------chHHHHHHHHhcCCCEEEEE
Confidence 36999998643 13556678999999999985
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.41 E-value=0.017 Score=40.04 Aligned_cols=94 Identities=7% Similarity=-0.028 Sum_probs=57.9
Q ss_pred CCCCCCCeEEEEcC--CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC-CCCCCceeE
Q psy8370 77 KSDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP-EDLNIKYDV 153 (256)
Q Consensus 77 ~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~-~~~~~~~D~ 153 (256)
.+..++.+||=.|+ |.|..+..+++....+|++++.+++-.+.+++. +.. ..+ |..+... ......+|+
T Consensus 23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~l----Ga~--~~i--~~~~~~~~~~~~~g~D~ 94 (171)
T d1iz0a2 23 AQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL----GAE--EAA--TYAEVPERAKAWGGLDL 94 (171)
T ss_dssp TTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT----TCS--EEE--EGGGHHHHHHHTTSEEE
T ss_pred hCCCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccccc----ccc--eee--ehhhhhhhhhccccccc
Confidence 45788999998884 345677777665434899999988777766642 211 121 2222110 001136999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+-... + .+....+.|+|+|.++..
T Consensus 95 v~d~~G------~----~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 95 VLEVRG------K----EVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EEECSC------T----THHHHHTTEEEEEEEEEC
T ss_pred cccccc------h----hHHHHHHHHhcCCcEEEE
Confidence 986422 1 235567899999999875
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.39 E-value=0.017 Score=40.24 Aligned_cols=50 Identities=10% Similarity=-0.107 Sum_probs=37.6
Q ss_pred ccCCCCCCCeEEEEcCCCC-HhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHH
Q psy8370 75 QKKSDPGKTRVLDVGAGIG-RISKYLLAK-HFDKIDLLEQSSKFIEQAKEEI 124 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G-~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~ 124 (256)
+..+.+++.+|+=+|||.. .++..+++. |+.+|+++|.+++-++.|++.-
T Consensus 23 ~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~G 74 (176)
T d1d1ta2 23 KTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVG 74 (176)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHT
T ss_pred HhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcC
Confidence 4446788999999999854 344444443 5569999999999999998863
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=94.24 E-value=0.045 Score=38.14 Aligned_cols=100 Identities=18% Similarity=0.038 Sum_probs=63.7
Q ss_pred ccCCCCCCCeEEEEcCCC--CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc----CCCCCC
Q psy8370 75 QKKSDPGKTRVLDVGAGI--GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF----KPEDLN 148 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~----~~~~~~ 148 (256)
+..+..++.+||-.|++. |..+..+++....+|+++.-+++-.+.+++. +.. ..+..+-.+. ......
T Consensus 23 ~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga~--~vi~~~~~~~~~~~~~~~~~ 96 (182)
T d1v3va2 23 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GFD--AAFNYKTVNSLEEALKKASP 96 (182)
T ss_dssp TTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS--EEEETTSCSCHHHHHHHHCT
T ss_pred HHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hhh--hhcccccccHHHHHHHHhhc
Confidence 344678899999888754 4667777766545999999998877666654 211 2222111111 001112
Q ss_pred CceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 149 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
..+|+|+-... ...++.+.+.|+|+|.+++.-
T Consensus 97 ~Gvd~v~D~vG---------~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 97 DGYDCYFDNVG---------GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp TCEEEEEESSC---------HHHHHHHGGGEEEEEEEEECC
T ss_pred CCCceeEEecC---------chhhhhhhhhccCCCeEEeec
Confidence 36999987643 146678899999999999863
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=93.70 E-value=0.15 Score=37.55 Aligned_cols=76 Identities=21% Similarity=0.195 Sum_probs=54.5
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCC--------
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~-------- 147 (256)
+++++|--|++.|. .+..|++.|+ +|+.+|.+++.++.+.+...... .++ ..+.+|+.+......
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~-~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEV-LTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCE-EEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeE-EEEeccCCCHHHHHHHHHHHHHH
Confidence 46788888988774 6777888888 89999999998888777665433 345 667888866532111
Q ss_pred CCceeEEEech
Q psy8370 148 NIKYDVIWIQW 158 (256)
Q Consensus 148 ~~~~D~V~~~~ 158 (256)
-+..|+++.+.
T Consensus 81 ~G~iDiLVnnA 91 (258)
T d1iy8a_ 81 FGRIDGFFNNA 91 (258)
T ss_dssp HSCCSEEEECC
T ss_pred hCCCCEEEECC
Confidence 24799998764
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=93.61 E-value=0.12 Score=40.75 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=40.2
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHhc
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKH---FDKIDLLEQSSKFIEQAKEEILKD 127 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~ 127 (256)
..++..++|+|+-.|..+..++... ..+|+++|+++...+..++++...
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n 261 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY 261 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHT
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 5677899999999999887765432 348999999999999999887643
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=93.44 E-value=0.027 Score=39.18 Aligned_cols=102 Identities=14% Similarity=0.006 Sum_probs=57.8
Q ss_pred CCCCeEEEEcCCC-CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcc----------ccccCCC---
Q psy8370 80 PGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG----------IQDFKPE--- 145 (256)
Q Consensus 80 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d----------~~~~~~~--- 145 (256)
-++.+|+-||+|. |..+...+.....+|+++|.++..++..++..... + .....+ ..+....
T Consensus 27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~---i-~~~~~~~~~~~~~~gyA~~~s~~~~~ 102 (183)
T d1l7da1 27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKF---I-TVDDEAMKTAETAGGYAKEMGEEFRK 102 (183)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEE---C-CC-----------------------C
T ss_pred cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcce---E-EEeccccccccccccchhhcCHHHHH
Confidence 4578999999996 45555555443449999999998888777654321 1 110000 0000000
Q ss_pred -------CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 146 -------DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 146 -------~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
..-...|+|+....+.--+.+. -+-+++.+.||||..++=
T Consensus 103 ~~~~~l~~~l~~aDlVI~talipG~~aP~--lit~~mv~~Mk~GSVIVD 149 (183)
T d1l7da1 103 KQAEAVLKELVKTDIAITTALIPGKPAPV--LITEEMVTKMKPGSVIID 149 (183)
T ss_dssp CHHHHHHHHHTTCSEEEECCCCTTSCCCC--CSCHHHHTTSCTTCEEEE
T ss_pred HHHHHHHHHHHhhhhheeeeecCCcccce--eehHHHHHhcCCCcEEEE
Confidence 0012479999875543221111 244567889999887764
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.43 E-value=0.071 Score=37.27 Aligned_cols=93 Identities=13% Similarity=0.005 Sum_probs=55.5
Q ss_pred CCeEEEEc--CCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc---cccccCCCCCCCceeEEE
Q psy8370 82 KTRVLDVG--AGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV---GIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 82 ~~~vLDiG--~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~---d~~~~~~~~~~~~~D~V~ 155 (256)
+.+||=.| .|.|..+..+++. |+..|+++..+++......+. .+.. ..+.. ++.+.........+|+|+
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~---~gad--~vi~~~~~~~~~~~~~~~~~GvDvv~ 105 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSE---LGFD--AAVNYKTGNVAEQLREACPGGVDVYF 105 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHH---SCCS--EEEETTSSCHHHHHHHHCTTCEEEEE
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhc---ccce--EEeeccchhHHHHHHHHhccCceEEE
Confidence 37898877 4688899999875 555788877776544443322 2211 12222 221111100112599998
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
-... ...++...+.|+|+|.++..
T Consensus 106 D~vG---------g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 106 DNVG---------GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp ESSC---------HHHHHHHHTTEEEEEEEEEC
T ss_pred ecCC---------chhHHHHhhhccccccEEEe
Confidence 6543 13567789999999999875
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=93.34 E-value=0.19 Score=36.80 Aligned_cols=106 Identities=12% Similarity=0.034 Sum_probs=67.3
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-hcCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEIL-KDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
+++++|--|++.|. .+..|++.|+ +|+.+|.+++.++.+.+.+. ..+.++ ..+.+|+.+...... -
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~-~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVET-MAFRCDVSNYEEVKKLLEAVKEKF 81 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCE-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcE-EEEEccCCCHHHHHHHHHHHHHHc
Confidence 47788988988773 6777778888 89999999887766655543 334455 677888866432110 2
Q ss_pred CceeEEEechh------hhccCHHHH-----------HHHHHHHhhhcC--CCcEEEEE
Q psy8370 149 IKYDVIWIQWV------LMFILDEDI-----------IKFLNLCKQILN--KNGIIIIK 188 (256)
Q Consensus 149 ~~~D~V~~~~~------l~~~~~~~~-----------~~~l~~~~~~Lk--pgG~l~i~ 188 (256)
+.+|+++.+.. +..++.+++ -.+.+.+.+.|+ .+|.++..
T Consensus 82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i 140 (251)
T d1vl8a_ 82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINI 140 (251)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccccccccccc
Confidence 47999997743 233343332 234455566664 35666665
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=93.29 E-value=0.62 Score=31.70 Aligned_cols=94 Identities=16% Similarity=0.087 Sum_probs=57.3
Q ss_pred CeEEEEcCCCCH--hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCcc-----eEEEccccccCCCCCCCceeE
Q psy8370 83 TRVLDVGAGIGR--ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD--CDKLD-----KCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 83 ~~vLDiG~G~G~--~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~i~-----~~~~~d~~~~~~~~~~~~~D~ 153 (256)
++|.=||+|... ++..|+..|. +|+.+|.+++-++..++.-... ..... .....|..+. ....|+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-----~~~aD~ 75 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA-----VKDADV 75 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH-----HTTCSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH-----hcCCCE
Confidence 678889998654 4555666676 8999999998777766542110 00010 0111111111 125788
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
|+... +......+++++...++++..+++
T Consensus 76 iii~v-----~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 76 ILIVV-----PAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp EEECS-----CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred EEEEE-----chhHHHHHHHHhhhccCCCCEEEE
Confidence 88752 333456799999999999887665
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.23 E-value=0.047 Score=37.76 Aligned_cols=100 Identities=13% Similarity=-0.016 Sum_probs=58.4
Q ss_pred ccCCCCCCCeEEEEcCCCCH-hHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE-cccccc----CCCCC
Q psy8370 75 QKKSDPGKTRVLDVGAGIGR-ISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN-VGIQDF----KPEDL 147 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~-~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~-~d~~~~----~~~~~ 147 (256)
+....+++.+||=+|+|.+. .+..++. .+..+|+++|.++.-.+.+++.-.. ..+. .+..+. .....
T Consensus 22 ~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~------~~i~~~~~~~~~~~~~~~~~ 95 (176)
T d2jhfa2 22 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT------ECVNPQDYKKPIQEVLTEMS 95 (176)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS------EEECGGGCSSCHHHHHHHHT
T ss_pred HhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe------eEEecCCchhHHHHHHHHHh
Confidence 44567889999999997543 3333333 3566999999999988877665211 1221 111111 00001
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCC-cEEEEE
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKN-GIIIIK 188 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 188 (256)
.+.+|+|+-..... ..++.+...++++ |.+++.
T Consensus 96 ~~G~D~vid~~G~~--------~~~~~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 96 NGGVDFSFEVIGRL--------DTMVTALSCCQEAYGVSVIV 129 (176)
T ss_dssp TSCBSEEEECSCCH--------HHHHHHHHHBCTTTCEEEEC
T ss_pred cCCCCEEEecCCch--------hHHHHHHHHHhcCCcceEEe
Confidence 23689998764322 3455566777776 555554
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.12 E-value=0.63 Score=29.98 Aligned_cols=89 Identities=19% Similarity=0.132 Sum_probs=52.9
Q ss_pred eEEEEcCCCCHhHHHHHH----hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC--CCCCceeEEEec
Q psy8370 84 RVLDVGAGIGRISKYLLA----KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIWIQ 157 (256)
Q Consensus 84 ~vLDiG~G~G~~~~~l~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~--~~~~~~D~V~~~ 157 (256)
+|+=+|+ |.++..+++ .|. +|+.+|.+++.++.+++.+ .. .++.+|..+.... .+-..+|.+++.
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~-----~~-~vi~Gd~~~~~~l~~~~i~~a~~vv~~ 72 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI-----DA-LVINGDCTKIKTLEDAGIEDADMYIAV 72 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----SS-EEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred EEEEECC--CHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhh-----hh-hhccCcccchhhhhhcChhhhhhhccc
Confidence 4555655 666555543 455 8999999999888766542 34 6788887665321 112357888874
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
. ++++...+.....+.+.+.-.+.
T Consensus 73 t-----~~d~~N~~~~~~~k~~~~~~iI~ 96 (132)
T d1lssa_ 73 T-----GKEEVNLMSSLLAKSYGINKTIA 96 (132)
T ss_dssp C-----SCHHHHHHHHHHHHHTTCCCEEE
T ss_pred C-----CcHHHHHHHHHHHHHcCCceEEE
Confidence 2 22333334445566677774443
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=92.89 E-value=0.12 Score=37.95 Aligned_cols=76 Identities=12% Similarity=0.057 Sum_probs=53.5
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
-+++++|--|++.|. .+..|++.|+ +|+.+|.+++.++.+.+.+... .++ .++.+|+.+...... .
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~-~~~-~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTP-DQI-QFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT-TTE-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCC-CcE-EEEEccCCCHHHHHHHHHHHHHHh
Confidence 356788888877763 5667777787 8999999998888777766432 356 778889876532111 2
Q ss_pred CceeEEEech
Q psy8370 149 IKYDVIWIQW 158 (256)
Q Consensus 149 ~~~D~V~~~~ 158 (256)
+..|+++.+.
T Consensus 81 G~iDiLVnnA 90 (251)
T d1zk4a1 81 GPVSTLVNNA 90 (251)
T ss_dssp SSCCEEEECC
T ss_pred CCceEEEecc
Confidence 5789998774
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=92.79 E-value=0.073 Score=36.53 Aligned_cols=97 Identities=15% Similarity=0.039 Sum_probs=59.3
Q ss_pred CCCCCeEEEEcC--CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccc-cccCCCCCCCceeEEE
Q psy8370 79 DPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI-QDFKPEDLNIKYDVIW 155 (256)
Q Consensus 79 ~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~-~~~~~~~~~~~~D~V~ 155 (256)
.+++.+||--|+ |-|..+..+++....+|+++.-+++-.+.+++.-. .. -+...+. .+.......+.+|+|+
T Consensus 21 ~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGa----d~-vi~~~~~~~~~~~~~~~~gvd~vi 95 (167)
T d1tt7a2 21 SPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGA----SE-VISREDVYDGTLKALSKQQWQGAV 95 (167)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTC----SE-EEEHHHHCSSCCCSSCCCCEEEEE
T ss_pred CCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcc----cc-eEeccchhchhhhcccCCCceEEE
Confidence 445667887664 45677777776644489999988877777765421 11 1111111 1111111124699988
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
-... ...+....+.|+|+|.+++.-
T Consensus 96 d~vg---------g~~~~~~~~~l~~~G~iv~~G 120 (167)
T d1tt7a2 96 DPVG---------GKQLASLLSKIQYGGSVAVSG 120 (167)
T ss_dssp ESCC---------THHHHHHHTTEEEEEEEEECC
T ss_pred ecCc---------HHHHHHHHHHhccCceEEEee
Confidence 7633 146677889999999999864
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=92.72 E-value=0.25 Score=35.93 Aligned_cols=103 Identities=18% Similarity=0.108 Sum_probs=64.9
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
+++++|--|++.| ..+..+++.|+ +|+.+|.+++.++...+.+.. +. ..+..|+.+...... -+
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~---~~-~~~~~Dv~~~~~v~~~~~~~~~~~g 77 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGA---NG-KGLMLNVTDPASIESVLEKIRAEFG 77 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGG---GE-EEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCC---CC-cEEEEEecCHHHhhhhhhhhhcccC
Confidence 4677887787777 36667777788 899999999888877766643 34 667778765432110 25
Q ss_pred ceeEEEechh------hhccCHHHHH-----------HHHHHHhhhc--CCCcEEEEE
Q psy8370 150 KYDVIWIQWV------LMFILDEDII-----------KFLNLCKQIL--NKNGIIIIK 188 (256)
Q Consensus 150 ~~D~V~~~~~------l~~~~~~~~~-----------~~l~~~~~~L--kpgG~l~i~ 188 (256)
..|+++.+.. +..++.+++. .+.+.+.+.| +.+|.++..
T Consensus 78 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~i 135 (243)
T d1q7ba_ 78 EVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITI 135 (243)
T ss_dssp SCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeee
Confidence 7999987632 3333333322 2334455555 346777765
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=92.58 E-value=0.91 Score=30.43 Aligned_cols=135 Identities=13% Similarity=0.107 Sum_probs=71.4
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCC-H-hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIG-R-ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 144 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G-~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~ 144 (256)
++..+.+ ....+.+||=||.|.- . .+..|...++.+++.+--+.+-.+...+.+ + . ...++.++..
T Consensus 13 ~la~~~~----~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~---~--~---~~~~~~~~~~ 80 (159)
T d1gpja2 13 ELAEREL----GSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL---G--G---EAVRFDELVD 80 (159)
T ss_dssp HHHHHHH----SCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH---T--C---EECCGGGHHH
T ss_pred HHHHHHh----CCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh---h--c---ccccchhHHH
Confidence 4455555 4457889999988632 2 334455667778888887754333222222 1 1 2223344332
Q ss_pred CCCCCceeEEEechhhh--ccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCC-ccccCCCCceeeCHHHHHHHHHh
Q psy8370 145 EDLNIKYDVIWIQWVLM--FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK-NEYDDEDSSVVRSLPQFCLLFSK 219 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~--~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 219 (256)
.-. .+|+|++...-. -+..+ .++...+.-+.+..+++.|...+... .........+.++.+++..+.++
T Consensus 81 ~l~--~~Divi~atss~~~ii~~~----~i~~~~~~r~~~~~~~iiDlavPr~vd~~v~~~~~v~l~~ld~l~~~~~~ 152 (159)
T d1gpja2 81 HLA--RSDVVVSATAAPHPVIHVD----DVREALRKRDRRSPILIIDIANPRDVEEGVENIEDVEVRTIDDLRVIARE 152 (159)
T ss_dssp HHH--TCSEEEECCSSSSCCBCHH----HHHHHHHHCSSCCCEEEEECCSSCSBCTTGGGSTTEEEEEHHHHHHHHHH
T ss_pred Hhc--cCCEEEEecCCCCccccHh----hhHHHHHhcccCCCeEEEeecCCCCcChhhhccCCeEEEeHHHHHHHHHH
Confidence 223 699999875432 23322 33333333344444555554333322 22334455566788888776654
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.55 E-value=0.19 Score=36.70 Aligned_cols=74 Identities=9% Similarity=-0.031 Sum_probs=51.9
Q ss_pred CCCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 80 PGKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 80 ~~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
-+++++|=-|++.| ..+..|++.|+ +|+.+|.+++.++...+.+.. +. .++.+|+.+...... .
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~---~~-~~~~~Dv~~~~~v~~~~~~~~~~~ 78 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELAD---AA-RYVHLDVTQPAQWKAAVDTAVTAF 78 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGG---GE-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhC---cc-eEEEeecCCHHHHHHHHHHHHHHh
Confidence 35788888898877 36677777888 899999999877766665543 44 677888766432110 2
Q ss_pred CceeEEEech
Q psy8370 149 IKYDVIWIQW 158 (256)
Q Consensus 149 ~~~D~V~~~~ 158 (256)
+..|+++.+.
T Consensus 79 g~idilinnA 88 (244)
T d1nffa_ 79 GGLHVLVNNA 88 (244)
T ss_dssp SCCCEEEECC
T ss_pred CCCeEEEECC
Confidence 4789998774
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=92.53 E-value=0.21 Score=36.79 Aligned_cols=76 Identities=16% Similarity=-0.013 Sum_probs=52.2
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCH-HHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSS-KFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~-~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
+++++|-.|++.|. .+..|++.|+ +|+.++.+. ...+.+.+.++..+.++ ..+..|+.+...... .
T Consensus 6 ~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~~~-~~~~~Dvt~~~~v~~~~~~~~~~~ 83 (261)
T d1geea_ 6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEA-IAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEE-EEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCCcE-EEEEccCCCHHHHHHHHHHHHHHh
Confidence 56788888887773 6677777787 899999874 45666666666665566 778888876532111 2
Q ss_pred CceeEEEech
Q psy8370 149 IKYDVIWIQW 158 (256)
Q Consensus 149 ~~~D~V~~~~ 158 (256)
+..|+++.+.
T Consensus 84 G~iDiLVnnA 93 (261)
T d1geea_ 84 GKLDVMINNA 93 (261)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEeeccc
Confidence 4789998774
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.32 Score=35.35 Aligned_cols=73 Identities=18% Similarity=0.147 Sum_probs=50.8
Q ss_pred CCCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC----CCCCcee
Q psy8370 80 PGKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE----DLNIKYD 152 (256)
Q Consensus 80 ~~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~----~~~~~~D 152 (256)
-+++++|-.|++.| ..+..+++.|+ +|+.+|.+++.++...+... .+ ..+..|+.+.... ..-++.|
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~----~~-~~~~~Dv~d~~~v~~~~~~~g~iD 78 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECP----GI-EPVCVDLGDWEATERALGSVGPVD 78 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST----TC-EEEECCTTCHHHHHHHHTTCCCCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcC----CC-eEEEEeCCCHHHHHHHHHHhCCce
Confidence 35788999998887 46677777888 89999999887766554432 34 6777787654211 1124799
Q ss_pred EEEech
Q psy8370 153 VIWIQW 158 (256)
Q Consensus 153 ~V~~~~ 158 (256)
+++.+.
T Consensus 79 ilVnnA 84 (244)
T d1pr9a_ 79 LLVNNA 84 (244)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 999764
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.97 E-value=0.46 Score=35.61 Aligned_cols=77 Identities=13% Similarity=0.071 Sum_probs=53.8
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc-----CCCcceEEEccccccCCCCC----
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKCYNVGIQDFKPEDL---- 147 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~i~~~~~~d~~~~~~~~~---- 147 (256)
-+++++|-.|++.|. .+..|++.|+ +|+.+|.+++.++.+.+.+... +.++ ..+.+|+.+......
T Consensus 10 L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~-~~~~~Dvs~~~~v~~~~~~ 87 (297)
T d1yxma1 10 LQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARV-IPIQCNIRNEEEVNNLVKS 87 (297)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCE-EEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceE-EEEeccCCCHHHHHHHHHH
Confidence 467888988887774 5666777787 8999999998887777666532 2345 677888876532111
Q ss_pred ----CCceeEEEech
Q psy8370 148 ----NIKYDVIWIQW 158 (256)
Q Consensus 148 ----~~~~D~V~~~~ 158 (256)
.+..|+++.+.
T Consensus 88 ~~~~~G~iDiLVnnA 102 (297)
T d1yxma1 88 TLDTFGKINFLVNNG 102 (297)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHhCCeEEEEeec
Confidence 24789999774
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=91.79 E-value=0.17 Score=35.35 Aligned_cols=78 Identities=8% Similarity=-0.017 Sum_probs=51.9
Q ss_pred CCCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC-CCCceeEE
Q psy8370 79 DPGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED-LNIKYDVI 154 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~-~~~~~D~V 154 (256)
.-++++||=.|++.|. .+..+++.|+ +|+.++.+++..+...+.+.... ++ .+...|+.+..... ..+..|++
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~-~~~~~d~~~~~~~~~~~~~iDil 96 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRF-KV-NVTAAETADDASRAEAVKGAHFV 96 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHH-TC-CCEEEECCSHHHHHHHTTTCSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhcc-ch-hhhhhhcccHHHHHHHhcCcCee
Confidence 4568899999977663 6667777787 89999999988877777665432 33 44555554332110 01368999
Q ss_pred Eechh
Q psy8370 155 WIQWV 159 (256)
Q Consensus 155 ~~~~~ 159 (256)
+.+..
T Consensus 97 in~Ag 101 (191)
T d1luaa1 97 FTAGA 101 (191)
T ss_dssp EECCC
T ss_pred eecCc
Confidence 98754
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=91.61 E-value=0.29 Score=35.89 Aligned_cols=76 Identities=13% Similarity=0.050 Sum_probs=54.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
+++++|=-|++.|. .+..|++.|+ +|+.++.+++.++.+.+.++..+.++ .++.+|+.+...... -+
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~-~~~~~Dvs~~~~~~~~~~~~~~~~g 87 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQA-FACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCE-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcE-EEEEccCCCHHHHHHHHHHHHHHcC
Confidence 56788877776663 5566666777 89999999998888888887766666 778889876432110 24
Q ss_pred ceeEEEech
Q psy8370 150 KYDVIWIQW 158 (256)
Q Consensus 150 ~~D~V~~~~ 158 (256)
..|+++.+.
T Consensus 88 ~iDilvnnA 96 (255)
T d1fmca_ 88 KVDILVNNA 96 (255)
T ss_dssp SCCEEEECC
T ss_pred CCCEeeeCC
Confidence 789998774
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=91.56 E-value=0.24 Score=36.36 Aligned_cols=76 Identities=11% Similarity=0.050 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHH-HhcCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEI-LKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
+++++|=.|++.|. .+..|++.|+ +|+.+|.++..++.+.+.. ...+.++ ..+.+|+.+...... .
T Consensus 8 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~~~-~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (260)
T d1h5qa_ 8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKT-KAYQCDVSNTDIVTKTIQQIDADL 85 (260)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCE-EEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCce-EEEEccCCCHHHHHHHHHHHHHHh
Confidence 56788888887773 6677777788 8999999876665554444 3334466 778888876532110 2
Q ss_pred CceeEEEech
Q psy8370 149 IKYDVIWIQW 158 (256)
Q Consensus 149 ~~~D~V~~~~ 158 (256)
+..|+++.+.
T Consensus 86 g~iDilVnnA 95 (260)
T d1h5qa_ 86 GPISGLIANA 95 (260)
T ss_dssp CSEEEEEECC
T ss_pred CCCcEecccc
Confidence 5799998764
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=91.45 E-value=0.39 Score=34.76 Aligned_cols=104 Identities=16% Similarity=0.096 Sum_probs=66.3
Q ss_pred EEEEcCCCCH---hHHHHHHhcCC------eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------
Q psy8370 85 VLDVGAGIGR---ISKYLLAKHFD------KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 85 vLDiG~G~G~---~~~~l~~~~~~------~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-------- 147 (256)
||=-|++.|. .+..|++.|+. .++.++.+++.++...+.+...+.+. .++.+|+.+......
T Consensus 4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~-~~~~~Dvt~~~~v~~~~~~~~~~ 82 (240)
T d2bd0a1 4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALT-DTITADISDMADVRRLTTHIVER 82 (240)
T ss_dssp EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEE-EEEECCTTSHHHHHHHHHHHHHH
T ss_pred EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcE-EEEEecCCCHHHHHHHHHHHHHH
Confidence 5666777773 56667777763 38889999998888888777666566 778888876532111
Q ss_pred CCceeEEEechh------hhccCHHHHHH-----------HHHHHhhhcC--CCcEEEEEe
Q psy8370 148 NIKYDVIWIQWV------LMFILDEDIIK-----------FLNLCKQILN--KNGIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~------l~~~~~~~~~~-----------~l~~~~~~Lk--pgG~l~i~~ 189 (256)
-+..|+++.+.. +..++.+++.+ +.+.+.+.|+ .+|.++...
T Consensus 83 ~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~is 143 (240)
T d2bd0a1 83 YGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFIT 143 (240)
T ss_dssp TSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred cCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEe
Confidence 357999997743 33344444332 3334455553 467777653
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=91.42 E-value=0.23 Score=36.10 Aligned_cols=71 Identities=13% Similarity=0.030 Sum_probs=49.1
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
+++++|--|++.|. .+..|++.|+ +|+.+|.+++.++.+.+.. +. ..+.+|+.+...... -+
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~-----~~-~~~~~Dv~~~~~v~~~~~~~~~~~g 76 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAV-----GA-HPVVMDVADPASVERGFAEALAHLG 76 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT-----TC-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc-----CC-eEEEEecCCHHHHHHHHHHHHHhcC
Confidence 46788888888773 5667777888 8999999988776665432 34 677788766432111 24
Q ss_pred ceeEEEech
Q psy8370 150 KYDVIWIQW 158 (256)
Q Consensus 150 ~~D~V~~~~ 158 (256)
..|+++.+.
T Consensus 77 ~iDilVnnA 85 (242)
T d1ulsa_ 77 RLDGVVHYA 85 (242)
T ss_dssp SCCEEEECC
T ss_pred CceEEEECC
Confidence 789988763
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.40 E-value=0.15 Score=37.53 Aligned_cols=78 Identities=18% Similarity=0.098 Sum_probs=54.1
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCcceEEEccccccCCCCC--------
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD--CDKLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~i~~~~~~d~~~~~~~~~-------- 147 (256)
.++++|=-|++.|. .+..+++.|+ +|+.+|.+++.++.+.+.+... +.++ .++.+|+.+......
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKT-LFIQCDVADQQQLRDTFRKVVDH 79 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGE-EEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcE-EEEEeecCCHHHHHHHHHHHHHH
Confidence 36778888887773 5666777787 8999999998888777766543 2345 677888876532111
Q ss_pred CCceeEEEechhh
Q psy8370 148 NIKYDVIWIQWVL 160 (256)
Q Consensus 148 ~~~~D~V~~~~~l 160 (256)
.+..|+++.+...
T Consensus 80 ~G~iDilVnnAg~ 92 (254)
T d2gdza1 80 FGRLDILVNNAGV 92 (254)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCcCeecccccc
Confidence 2579999987543
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=91.29 E-value=0.37 Score=35.08 Aligned_cols=75 Identities=9% Similarity=0.045 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
+++.+|-.|++.| ..+..|++.|+ +|+.+|.++. +.+.+..+..+.++ ..+.+|+.+...... .+
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~--~~~~~~~~~~g~~~-~~~~~Dvs~~~~v~~~~~~~~~~~G 79 (247)
T d2ew8a1 4 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPA--PEAEAAIRNLGRRV-LTVKCDVSQPGDVEAFGKQVISTFG 79 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTTCCE-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCch--HHHHHHHHHcCCcE-EEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 5678888888777 36677777888 8999998764 23334444555566 778889876532111 25
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+++.+..
T Consensus 80 ~iDilVnnAG 89 (247)
T d2ew8a1 80 RCDILVNNAG 89 (247)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999987743
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=91.25 E-value=0.35 Score=35.42 Aligned_cols=73 Identities=11% Similarity=0.008 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
+++++|-.|++.| ..+..+++.|+ +|+.+|.+++.++...+.+ +.++ .++..|+.+...... .+
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~---~~~~-~~~~~Dv~~~~~v~~~~~~~~~~~g 78 (254)
T d1hdca_ 4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATAREL---GDAA-RYQHLDVTIEEDWQRVVAYAREEFG 78 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT---GGGE-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---CCce-EEEEcccCCHHHHHHHHHHHHHHcC
Confidence 5788898998887 46777777888 8999999987666554433 3345 778888875432111 24
Q ss_pred ceeEEEech
Q psy8370 150 KYDVIWIQW 158 (256)
Q Consensus 150 ~~D~V~~~~ 158 (256)
..|+++.+.
T Consensus 79 ~iDilVnnA 87 (254)
T d1hdca_ 79 SVDGLVNNA 87 (254)
T ss_dssp CCCEEEECC
T ss_pred CccEEEecC
Confidence 789888763
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=91.15 E-value=0.81 Score=31.31 Aligned_cols=96 Identities=15% Similarity=0.008 Sum_probs=57.1
Q ss_pred CCCCCeEEEEcC--CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
.+++.+||-.|+ |.|..+..+++....+|+++.-+++..+.+++.-.. .++.-+-.+.........+|.|+-
T Consensus 29 ~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad------~vi~~~~~~~~~~l~~~~~~~vvD 102 (177)
T d1o89a2 29 RPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGAS------RVLPRDEFAESRPLEKQVWAGAID 102 (177)
T ss_dssp CGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEE------EEEEGGGSSSCCSSCCCCEEEEEE
T ss_pred CCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccc------cccccccHHHHHHHHhhcCCeeEE
Confidence 344557876654 355677777766444899999998887777654211 223222111111111125788753
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
. +. ...+....+.|+++|.++..-
T Consensus 103 ~-----Vg----g~~~~~~l~~l~~~Griv~~G 126 (177)
T d1o89a2 103 T-----VG----DKVLAKVLAQMNYGGCVAACG 126 (177)
T ss_dssp S-----SC----HHHHHHHHHTEEEEEEEEECC
T ss_pred E-----cc----hHHHHHHHHHhccccceEeec
Confidence 3 22 135778889999999999864
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.13 E-value=0.32 Score=35.61 Aligned_cols=74 Identities=11% Similarity=0.077 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
+++++|-.|++.| ..+..|++.|+ +|+.+|.+++.++.+.+.+ +.+. ..+.+|+.+...... .+
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~---~~~~-~~~~~Dvt~~~~v~~~~~~~~~~~g 78 (256)
T d1k2wa_ 4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEI---GPAA-CAIALDVTDQASIDRCVAELLDRWG 78 (256)
T ss_dssp TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHH---CTTE-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---CCce-EEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 4678888888877 36677777787 8999999987776665554 3355 677888866532111 24
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+++.+..
T Consensus 79 ~iDilVnnAg 88 (256)
T d1k2wa_ 79 SIDILVNNAA 88 (256)
T ss_dssp CCCEEEECCC
T ss_pred CccEEEeecc
Confidence 7899987743
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=90.83 E-value=0.22 Score=36.47 Aligned_cols=105 Identities=15% Similarity=0.014 Sum_probs=65.4
Q ss_pred CCCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 80 PGKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 80 ~~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
-+++++|--|++.| ..+..|++.|+ +|+.+|.+++.++.+.+.+. .+. .++..|+.+...... .
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~---~~~-~~~~~Dv~~~~~~~~~~~~~~~~~ 78 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELG---ERS-MFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHC---TTE-EEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC---CCe-EEEEeecCCHHHHHHHHHHHHHHh
Confidence 35678888887777 36677777787 89999999988777666553 234 567777765432111 2
Q ss_pred CceeEEEechhh------hccCHHHHH-----------HHHHHHhhhcC-CCcEEEEEe
Q psy8370 149 IKYDVIWIQWVL------MFILDEDII-----------KFLNLCKQILN-KNGIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~l------~~~~~~~~~-----------~~l~~~~~~Lk-pgG~l~i~~ 189 (256)
+..|+++.+... ..++.+++. .+.+.+.+.|+ .+|.++...
T Consensus 79 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~is 137 (253)
T d1hxha_ 79 GTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMA 137 (253)
T ss_dssp CSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceeccc
Confidence 578999877432 222333322 23455566664 468777653
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=90.79 E-value=0.29 Score=35.93 Aligned_cols=107 Identities=14% Similarity=-0.031 Sum_probs=65.4
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCC-HHHHHHHHHHHHh-cCCCcceEEEccccccCCCCC--------
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQS-SKFIEQAKEEILK-DCDKLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~~-~~~~i~~~~~~d~~~~~~~~~-------- 147 (256)
+++++|--|++.|. .+..|++.|+ +|+.++.+ +..++.+.+.+.. .+.++ .++..|+.+......
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~~~-~~~~~Dv~~~~~v~~~~~~~~~~ 80 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKV-LYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCE-EEECCCTTSHHHHHHHHHHHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCCcE-EEEECCCCCHHHHHHHHHHHHHH
Confidence 46778877877774 6667777888 89999986 5566666655543 33456 778888876532111
Q ss_pred CCceeEEEechh------hhccCHHHHHH-----------HHHHHhhhcC--CCcEEEEEe
Q psy8370 148 NIKYDVIWIQWV------LMFILDEDIIK-----------FLNLCKQILN--KNGIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~------l~~~~~~~~~~-----------~l~~~~~~Lk--pgG~l~i~~ 189 (256)
.+..|+++.+.. +..++.+++.+ +.+.+.+.|+ .+|.++...
T Consensus 81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~is 141 (260)
T d1x1ta1 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIA 141 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred hCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecc
Confidence 257999987743 33344444333 3344455553 357777653
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.61 E-value=0.37 Score=35.18 Aligned_cols=72 Identities=10% Similarity=0.045 Sum_probs=50.0
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
+++++|=-|++.|. .+..|++.|+ +|+.+|.+++.++...+.. .+. .++.+|+.+...... -+
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~----~~~-~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQEL----PGA-VFILCDVTQEDDVKTLVSETIRRFG 78 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC----TTE-EEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc----CCC-eEEEccCCCHHHHHHHHHHHHHhcC
Confidence 57888988988773 6677777888 8999999988777665543 234 677888766432111 24
Q ss_pred ceeEEEech
Q psy8370 150 KYDVIWIQW 158 (256)
Q Consensus 150 ~~D~V~~~~ 158 (256)
..|+++.+.
T Consensus 79 ~iDilVnnA 87 (250)
T d1ydea1 79 RLDCVVNNA 87 (250)
T ss_dssp CCCEEEECC
T ss_pred CCCEEEecc
Confidence 789998764
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.40 E-value=0.67 Score=33.51 Aligned_cols=72 Identities=19% Similarity=0.126 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC----CCCCceeE
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE----DLNIKYDV 153 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~----~~~~~~D~ 153 (256)
+++++|=.|++.|. .+..|++.|+ +|+.+|.+++-++...+.. ..+ ..+..|+.+.... ..-++.|+
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~----~~~-~~~~~Dv~~~~~v~~~~~~~g~iDi 77 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKEC----PGI-EPVCVDLGDWDATEKALGGIGPVDL 77 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS----TTC-EEEECCTTCHHHHHHHHTTCCCCSE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc----CCC-eEEEEeCCCHHHHHHHHHHcCCCeE
Confidence 56888888887773 6677777787 8999999987665554432 245 6777887654321 11247999
Q ss_pred EEech
Q psy8370 154 IWIQW 158 (256)
Q Consensus 154 V~~~~ 158 (256)
++.+.
T Consensus 78 lVnnA 82 (242)
T d1cyda_ 78 LVNNA 82 (242)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99763
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=90.20 E-value=0.14 Score=37.37 Aligned_cols=78 Identities=13% Similarity=0.086 Sum_probs=46.6
Q ss_pred eEEEccccccCCCCCCCceeEEEech--h-----hhcc-CH----HHHHHHHHHHhhhcCCCcEEEEEecccCCCCcccc
Q psy8370 133 KCYNVGIQDFKPEDLNIKYDVIWIQW--V-----LMFI-LD----EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD 200 (256)
Q Consensus 133 ~~~~~d~~~~~~~~~~~~~D~V~~~~--~-----l~~~-~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~ 200 (256)
.++.+|..+....-.++++|+|++.= . .... +. +.....++++.++|+|+|.+++...
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~---------- 75 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT---------- 75 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC----------
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccC----------
Confidence 46777766543211123788888761 0 0011 11 2345688899999999998886421
Q ss_pred CCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 201 DEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
......+...+...||....
T Consensus 76 ------~~~~~~~~~~~~~~g~~~~~ 95 (256)
T d1g60a_ 76 ------PFNCAFICQYLVSKGMIFQN 95 (256)
T ss_dssp ------HHHHHHHHHHHHHTTCEEEE
T ss_pred ------chhhhhhhhhhhcccceeee
Confidence 01234566778889998654
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=90.20 E-value=0.45 Score=35.04 Aligned_cols=76 Identities=9% Similarity=0.031 Sum_probs=53.7
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
-+++++|-.|++.|. .+..|++.|+ +|+.+|.+++.++.+.+.+...+ .+ .++.+|+.+...... .
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~-~~-~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPD-VI-SFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTT-TE-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCC-ce-EEEEccCCCHHHHHHHHHHHHHHc
Confidence 357888988988774 5666777787 89999999988887777665433 45 677888866432110 2
Q ss_pred CceeEEEech
Q psy8370 149 IKYDVIWIQW 158 (256)
Q Consensus 149 ~~~D~V~~~~ 158 (256)
+..|+++.+.
T Consensus 81 g~iD~lVnnA 90 (268)
T d2bgka1 81 GKLDIMFGNV 90 (268)
T ss_dssp SCCCEEEECC
T ss_pred CCcceecccc
Confidence 4789999764
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=90.12 E-value=0.34 Score=33.58 Aligned_cols=101 Identities=10% Similarity=0.049 Sum_probs=54.0
Q ss_pred cCCCCCCCeEEEEcCC---CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc---cccccCCC---
Q psy8370 76 KKSDPGKTRVLDVGAG---IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV---GIQDFKPE--- 145 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G---~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~---d~~~~~~~--- 145 (256)
.....++.+||=+.+| .|..+..+++. |+ +++++--++...+...+..+..+.. ..+.. +..++...
T Consensus 23 ~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGad--~vi~~~~~~~~~~~~~v~~ 99 (189)
T d1gu7a2 23 YVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGAT--QVITEDQNNSREFGPTIKE 99 (189)
T ss_dssp SSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCS--EEEEHHHHHCGGGHHHHHH
T ss_pred HhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhcccc--EEEeccccchhHHHHHHHH
Confidence 3456777888877433 35666666665 45 7777644433344343444433311 22222 22111100
Q ss_pred ---CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 146 ---DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 146 ---~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
...+.+|+|+-... . ..+....+.|+|+|.++..
T Consensus 100 ~~~~~g~~vdvv~D~vg-----~----~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 100 WIKQSGGEAKLALNCVG-----G----KSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHHHTCCEEEEEESSC-----H----HHHHHHHHTSCTTCEEEEC
T ss_pred HHhhccCCceEEEECCC-----c----chhhhhhhhhcCCcEEEEE
Confidence 00135899886422 1 2445677899999999875
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=90.09 E-value=0.74 Score=33.22 Aligned_cols=104 Identities=10% Similarity=0.049 Sum_probs=65.2
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
-+++++|=.|++.|. .+..|+++|+ +|+.++.+.+.++...+ ..+.++ .++.+|+.+...... .
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~---~~~~~~-~~~~~Dls~~~~i~~~~~~i~~~~ 77 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVA---ALEAEA-IAVVADVSDPKAVEAVFAEALEEF 77 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---TCCSSE-EEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH---HcCCce-EEEEecCCCHHHHHHHHHHHHHHh
Confidence 357888888888773 6677777787 89999999876554433 334455 677888765432111 2
Q ss_pred CceeEEEechhhh------ccCHHHH-----------HHHHHHHhhhcCCCcEEEEE
Q psy8370 149 IKYDVIWIQWVLM------FILDEDI-----------IKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 149 ~~~D~V~~~~~l~------~~~~~~~-----------~~~l~~~~~~LkpgG~l~i~ 188 (256)
+..|+++.+.... ..+.+++ ..+.+.+...++.++.+++.
T Consensus 78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ 134 (241)
T d2a4ka1 78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLT 134 (241)
T ss_dssp SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeec
Confidence 5799998875433 2232332 23345566777777776665
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=90.04 E-value=0.54 Score=34.16 Aligned_cols=102 Identities=15% Similarity=0.075 Sum_probs=62.4
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
-+++++|=-|++.|. .+..|++.|+ +|+.+|.+++..+.+++. .. .++..|+.+...... -
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~------~~-~~~~~Dv~~~~~v~~~~~~~~~~~ 74 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAI------GG-AFFQVDLEDERERVRFVEEAAYAL 74 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHH------TC-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc------CC-eEEEEeCCCHHHHHHHHHHHHHhc
Confidence 357888888887773 5667777888 899999998876655432 23 567778766432111 2
Q ss_pred CceeEEEechh------hhccCHHHHH-----------HHHHHHhhhcC--CCcEEEEEe
Q psy8370 149 IKYDVIWIQWV------LMFILDEDII-----------KFLNLCKQILN--KNGIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~------l~~~~~~~~~-----------~~l~~~~~~Lk--pgG~l~i~~ 189 (256)
++.|+++.+.. +..++.+++. .+.+.+.+.|+ .+|.++...
T Consensus 75 G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~is 134 (248)
T d2d1ya1 75 GRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVA 134 (248)
T ss_dssp SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccc
Confidence 57899887632 2333333322 23445555663 357777653
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=90.01 E-value=0.36 Score=36.00 Aligned_cols=77 Identities=10% Similarity=0.116 Sum_probs=53.1
Q ss_pred CCCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-cCCCcceEEEccccccCCCC--------C
Q psy8370 80 PGKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK-DCDKLDKCYNVGIQDFKPED--------L 147 (256)
Q Consensus 80 ~~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~i~~~~~~d~~~~~~~~--------~ 147 (256)
-+++++|=.|++.| ..+..|++.|+ +|+.+|.++..++.+.+.+.. .+.++ ..+.+|+.+..... .
T Consensus 23 l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~-~~~~~D~~~~~~v~~~~~~~~~~ 100 (294)
T d1w6ua_ 23 FQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKV-HAIQCDVRDPDMVQNTVSELIKV 100 (294)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCE-EEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCce-EEEEecccChHHHHHHhhhhhhh
Confidence 45688898888777 46677777787 899999998877766655543 33455 67778876543211 0
Q ss_pred CCceeEEEech
Q psy8370 148 NIKYDVIWIQW 158 (256)
Q Consensus 148 ~~~~D~V~~~~ 158 (256)
.+..|+++.+.
T Consensus 101 ~g~iDilvnnA 111 (294)
T d1w6ua_ 101 AGHPNIVINNA 111 (294)
T ss_dssp TCSCSEEEECC
T ss_pred ccccchhhhhh
Confidence 35789998763
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=89.64 E-value=0.5 Score=28.78 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=42.3
Q ss_pred CCCCCeEEEEcC-CCC--HhHHHHHHhcCCeEEEEeCCHH-HHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEE
Q psy8370 79 DPGKTRVLDVGA-GIG--RISKYLLAKHFDKIDLLEQSSK-FIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 79 ~~~~~~vLDiG~-G~G--~~~~~l~~~~~~~v~~vD~s~~-~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
.....+|.=||. |+| .++..|..+|+ .|+|.|.... ..+. +...+ + .+..+...+.. . ..|+|
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~----L~~~G--i-~v~~g~~~~~i---~--~~d~v 71 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQR----LAQAG--A-KIYIGHAEEHI---E--GASVV 71 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHH----HHHTT--C-EEEESCCGGGG---T--TCSEE
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhH----HHHCC--C-eEEECCccccC---C--CCCEE
Confidence 455677888864 455 56677888898 9999998632 2222 22222 3 44544433322 1 46888
Q ss_pred Eechhhhc
Q psy8370 155 WIQWVLMF 162 (256)
Q Consensus 155 ~~~~~l~~ 162 (256)
+.+..+..
T Consensus 72 V~S~AI~~ 79 (96)
T d1p3da1 72 VVSSAIKD 79 (96)
T ss_dssp EECTTSCT
T ss_pred EECCCcCC
Confidence 88766543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.92 E-value=0.4 Score=35.22 Aligned_cols=88 Identities=9% Similarity=-0.019 Sum_probs=49.2
Q ss_pred eEEEccccccCCCCCCCceeEEEech----hhh----ccCH-HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCC
Q psy8370 133 KCYNVGIQDFKPEDLNIKYDVIWIQW----VLM----FILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDED 203 (256)
Q Consensus 133 ~~~~~d~~~~~~~~~~~~~D~V~~~~----~l~----~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 203 (256)
.++.+|..+....-.++++|+|+..= ... +... +.....++++.++|+|+|.+++.........
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~------- 78 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGE------- 78 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCC-------
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCcccccc-------
Confidence 35666765542211124899998761 111 1111 3456788999999999999998532211110
Q ss_pred CceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 204 SSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 204 ~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
.........+..+++..||.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~ 102 (279)
T d1eg2a_ 79 AGSGDLISIISHMRQNSKMLLANL 102 (279)
T ss_dssp TTBCCHHHHHHHHHHHCCCEEEEE
T ss_pred ccccchhhHHHHHHhccCceeeee
Confidence 011112344556778889987654
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=88.69 E-value=0.67 Score=29.70 Aligned_cols=87 Identities=7% Similarity=-0.026 Sum_probs=54.4
Q ss_pred CCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC--CCCCCceeEEEechhhhccCHH
Q psy8370 90 AGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP--EDLNIKYDVIWIQWVLMFILDE 166 (256)
Q Consensus 90 ~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~--~~~~~~~D~V~~~~~l~~~~~~ 166 (256)
||.|..+..++...-. .++.+|.++...+..+.. .+ .++.+|..+... ..+-...+.+++.. +++
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~------~~-~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-----~~d 73 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS------GA-NFVHGDPTRVSDLEKANVRGARAVIVNL-----ESD 73 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT------TC-EEEESCTTSHHHHHHTTCTTCSEEEECC-----SSH
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc------Cc-cccccccCCHHHHHHhhhhcCcEEEEec-----cch
Confidence 6778888888775322 788999999877655432 45 778888866432 11123577777642 122
Q ss_pred HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 167 DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 167 ~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.....+-...+.+.|...++..
T Consensus 74 ~~n~~~~~~~r~~~~~~~iia~ 95 (129)
T d2fy8a1 74 SETIHCILGIRKIDESVRIIAE 95 (129)
T ss_dssp HHHHHHHHHHHHHCSSSCEEEE
T ss_pred hhhHHHHHHHHHHCCCceEEEE
Confidence 2233444556678888777764
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.38 E-value=0.78 Score=33.73 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=54.8
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEccccccCCCCC-------
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC---DKLDKCYNVGIQDFKPEDL------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~i~~~~~~d~~~~~~~~~------- 147 (256)
+++++|-.|++.| ..+..|++.|+ +|+.+|.+++.++.+.+.+...+ .++ ..+.+|+.+......
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~-~~~~~Dvs~~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQV-NSVVADVTTEDGQDQIINSTLK 81 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGE-EEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCce-EEEEccCCCHHHHHHHHHHHHH
Confidence 5678888888777 36677777888 89999999999888888876543 235 678888766432110
Q ss_pred -CCceeEEEech
Q psy8370 148 -NIKYDVIWIQW 158 (256)
Q Consensus 148 -~~~~D~V~~~~ 158 (256)
.+..|+++.+.
T Consensus 82 ~~g~iDilvnnA 93 (272)
T d1xkqa_ 82 QFGKIDVLVNNA 93 (272)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCceEEEeCC
Confidence 24789998763
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=88.28 E-value=0.47 Score=30.65 Aligned_cols=88 Identities=6% Similarity=-0.073 Sum_probs=47.5
Q ss_pred EEEEcCCCCHhHHHHH----HhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--CCCceeEEEech
Q psy8370 85 VLDVGAGIGRISKYLL----AKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--LNIKYDVIWIQW 158 (256)
Q Consensus 85 vLDiG~G~G~~~~~l~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--~~~~~D~V~~~~ 158 (256)
++=+|+ |.++..++ +.|. +|+++|.+++.++.++.. .. ..+.+|..+..... +-...|.|++..
T Consensus 3 ~iIiG~--G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~------~~-~~~~gd~~~~~~l~~a~i~~a~~vi~~~ 72 (134)
T d2hmva1 3 FAVIGL--GRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASY------AT-HAVIANATEENELLSLGIRNFEYVIVAI 72 (134)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTT------CS-EEEECCTTCTTHHHHHTGGGCSEEEECC
T ss_pred EEEECC--CHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHh------CC-cceeeecccchhhhccCCccccEEEEEc
Confidence 444444 56555544 3455 899999999988776432 22 56677776543211 112567766542
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
. +++....+-...+.+.|...++.
T Consensus 73 ~-----~~~~~~~~~~~~~~~~~~~~iia 96 (134)
T d2hmva1 73 G-----ANIQASTLTTLLLKELDIPNIWV 96 (134)
T ss_dssp C-----SCHHHHHHHHHHHHHTTCSEEEE
T ss_pred C-----chHHhHHHHHHHHHHcCCCcEEe
Confidence 1 11222333344444556666665
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=87.93 E-value=1.1 Score=32.28 Aligned_cols=103 Identities=17% Similarity=0.078 Sum_probs=61.1
Q ss_pred eEEEEcCCCCH---hHHHHHHhcCCeEEEEeC-CHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CCce
Q psy8370 84 RVLDVGAGIGR---ISKYLLAKHFDKIDLLEQ-SSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NIKY 151 (256)
Q Consensus 84 ~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~-s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~~~ 151 (256)
.||=-|++.|. .+..|++.|+ +|+..+. ++...+.+.+.++..+.++ .++..|+.+...... .+..
T Consensus 3 V~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~~~-~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (244)
T d1edoa_ 3 VVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQA-ITFGGDVSKEADVEAMMKTAIDAWGTI 80 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEE-EEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCcE-EEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 34555655552 4555666777 7877665 6677777777777666566 778888876532111 2579
Q ss_pred eEEEechh------hhccCHHHHHH-----------HHHHHhhhc--CCCcEEEEE
Q psy8370 152 DVIWIQWV------LMFILDEDIIK-----------FLNLCKQIL--NKNGIIIIK 188 (256)
Q Consensus 152 D~V~~~~~------l~~~~~~~~~~-----------~l~~~~~~L--kpgG~l~i~ 188 (256)
|+++.+.. +..++.+++.+ +.+.+.+.| +.+|.++..
T Consensus 81 DiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVni 136 (244)
T d1edoa_ 81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINI 136 (244)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEE
Confidence 99987643 22333333332 334445555 457877765
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.44 E-value=0.88 Score=33.50 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEccccccCCCCC-------
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC---DKLDKCYNVGIQDFKPEDL------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~i~~~~~~d~~~~~~~~~------- 147 (256)
+++++|=-|++.|. .+..|++.|+ +|+.+|.+++.++.+.+.+...+ .++ ..+.+|+.+......
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKI-NAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGE-EEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcce-EEEEeeCCCHHHHHHHHHHHHH
Confidence 46788888887773 6677777888 89999999998888888776653 245 678888766532111
Q ss_pred -CCceeEEEech
Q psy8370 148 -NIKYDVIWIQW 158 (256)
Q Consensus 148 -~~~~D~V~~~~ 158 (256)
-+..|+++.+.
T Consensus 81 ~~G~iDilVnnA 92 (274)
T d1xhla_ 81 KFGKIDILVNNA 92 (274)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCceEEEeec
Confidence 24789999774
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=87.15 E-value=0.61 Score=31.64 Aligned_cols=49 Identities=12% Similarity=0.013 Sum_probs=35.8
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHH-HH-HhcCCeEEEEeCCHHHHHHHHHH
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKY-LL-AKHFDKIDLLEQSSKFIEQAKEE 123 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~-l~-~~~~~~v~~vD~s~~~~~~a~~~ 123 (256)
+..+.+++.+|+=+|+|.+..... ++ ..+...|+++|.+++-++.+++.
T Consensus 22 ~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~ 72 (175)
T d1cdoa2 22 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF 72 (175)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred HhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence 445678899999999988554333 33 33556899999999888877764
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=87.03 E-value=2.8 Score=27.47 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=52.1
Q ss_pred CCCeEEEEcCCC-CH-hHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHh---cCCCcceEEEccccccCCCCCCCceeEE
Q psy8370 81 GKTRVLDVGAGI-GR-ISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILK---DCDKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 81 ~~~~vLDiG~G~-G~-~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~---~~~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
...+|.=||+|. |. ++..++..+ ..+++.+|++++..+--..-+.+ ..... .....|..+.. ..|+|
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~-~~~~~d~~~~~------~adiv 76 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPK-KIYSGEYSDCK------DADLV 76 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCC-EEEECCGGGGT------TCSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCc-eEeeccHHHhc------cccEE
Confidence 456888899864 43 334444555 45999999998654321111221 11223 45566665442 46988
Q ss_pred EechhhhccCHH-----------HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 155 WIQWVLMFILDE-----------DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 155 ~~~~~l~~~~~~-----------~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+........+.. -...+.+.+.+ -.|++.+++.
T Consensus 77 vitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~-~~p~aivivv 120 (146)
T d1ez4a1 77 VITAGAPQKPGESRLDLVNKNLNILSSIVKPVVD-SGFDGIFLVA 120 (146)
T ss_dssp EECCCC----------CHHHHHHHHHHHHHHHHH-TTCCSEEEEC
T ss_pred EEecccccCCCCCHHHHHHHHHHHHHHHHHHHhh-cCCCcEEEEe
Confidence 876433222211 12233333443 3688988885
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=86.86 E-value=0.99 Score=32.97 Aligned_cols=76 Identities=12% Similarity=0.142 Sum_probs=53.8
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEccccccCCCCC-------
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC---DKLDKCYNVGIQDFKPEDL------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~i~~~~~~d~~~~~~~~~------- 147 (256)
+++.+|-.|++.|. .+..|++.|+ +|+.+|.+++.++.+.+.+...+ .++ .++..|+.+......
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~-~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNV-NSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGE-EEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCce-EEEEccCCCHHHHHHHHHHHHH
Confidence 46777878877763 5667777787 89999999998888888776543 235 678888865432111
Q ss_pred -CCceeEEEech
Q psy8370 148 -NIKYDVIWIQW 158 (256)
Q Consensus 148 -~~~~D~V~~~~ 158 (256)
-+..|+++.+.
T Consensus 82 ~~g~iDilvnnA 93 (264)
T d1spxa_ 82 KFGKLDILVNNA 93 (264)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCEeeccc
Confidence 24789998764
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=86.61 E-value=3.2 Score=27.86 Aligned_cols=74 Identities=16% Similarity=0.057 Sum_probs=45.6
Q ss_pred CCCCCeEEEEcCCCCH-hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 79 DPGKTRVLDVGAGIGR-ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..++++||=+|+|... .....+..+..+++.+.-+.+-.+...+.+.... .....+..+.. .. .+|+|+..
T Consensus 15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~----~~~~~~~~~~~--~~--~~diiIN~ 86 (171)
T d1p77a1 15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG----NIQAVSMDSIP--LQ--TYDLVINA 86 (171)
T ss_dssp CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS----CEEEEEGGGCC--CS--CCSEEEEC
T ss_pred CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcc----ccchhhhcccc--cc--ccceeeec
Confidence 4567899999997543 3333334456699999999877776666665433 22333332222 12 68999987
Q ss_pred hhh
Q psy8370 158 WVL 160 (256)
Q Consensus 158 ~~l 160 (256)
..+
T Consensus 87 tp~ 89 (171)
T d1p77a1 87 TSA 89 (171)
T ss_dssp CCC
T ss_pred ccc
Confidence 443
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.30 E-value=0.76 Score=31.90 Aligned_cols=97 Identities=11% Similarity=0.132 Sum_probs=59.5
Q ss_pred CeEEEEcCCCC--HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC------CCcc--------------eE-EEccc
Q psy8370 83 TRVLDVGAGIG--RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC------DKLD--------------KC-YNVGI 139 (256)
Q Consensus 83 ~~vLDiG~G~G--~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~i~--------------~~-~~~d~ 139 (256)
.+|.-||+|+= ..+..++..|+ +|+.+|.+++.++.++++....- .... .+ ...|.
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~ 83 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA 83 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchh
Confidence 57888999853 24455556677 89999999999888877764210 0000 00 11111
Q ss_pred cccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 140 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 140 ~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.+. ....|+|+-.. .+.+ +...++++++.+.++++..|.-.
T Consensus 84 ~~a-----~~~ad~ViEav-~E~l--~~K~~v~~~l~~~~~~~~ilasn 124 (192)
T d1f0ya2 84 ASV-----VHSTDLVVEAI-VENL--KVKNELFKRLDKFAAEHTIFASN 124 (192)
T ss_dssp HHH-----TTSCSEEEECC-CSCH--HHHHHHHHHHTTTSCTTCEEEEC
T ss_pred Hhh-----hcccceehhhc-ccch--hHHHHHHHHHhhhcccCceeecc
Confidence 110 12467776542 2333 55678999999999998777654
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.61 E-value=1.7 Score=31.66 Aligned_cols=76 Identities=12% Similarity=0.102 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
+++++|=.|++.|. ++..++++|+ +|+.++.+++.++.+.+...... ... .....|..+...... .
T Consensus 13 ~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~ 90 (269)
T d1xu9a_ 13 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASA-HYIAGTMEDMTFAEQFVAQAGKLM 90 (269)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEE-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhcccc-hhhhhhhhhHHHHHHHHHHHHHHh
Confidence 57889989998884 7777778887 89999999998888776654332 333 556666543321100 2
Q ss_pred CceeEEEech
Q psy8370 149 IKYDVIWIQW 158 (256)
Q Consensus 149 ~~~D~V~~~~ 158 (256)
+..|+++.+.
T Consensus 91 g~~~~li~na 100 (269)
T d1xu9a_ 91 GGLDMLILNH 100 (269)
T ss_dssp TSCSEEEECC
T ss_pred CCcccccccc
Confidence 4678877653
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=83.69 E-value=1.6 Score=25.94 Aligned_cols=59 Identities=3% Similarity=-0.110 Sum_probs=34.6
Q ss_pred CCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc-cccccCCCCCCCceeEEEechhhhcc
Q psy8370 92 IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GIQDFKPEDLNIKYDVIWIQWVLMFI 163 (256)
Q Consensus 92 ~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~-d~~~~~~~~~~~~~D~V~~~~~l~~~ 163 (256)
...++..|.++|+ .|+|.|..+... .+ +++..+ + .+..+ +...+ . ..|+|+.+..+..-
T Consensus 14 Ms~LA~~L~~~G~-~VsGSD~~~~~~--t~-~L~~~G--i-~i~~gh~~~~i----~--~~d~vV~SsAI~~~ 73 (89)
T d1j6ua1 14 MSAVALHEFSNGN-DVYGSNIEETER--TA-YLRKLG--I-PIFVPHSADNW----Y--DPDLVIKTPAVRDD 73 (89)
T ss_dssp HHHHHHHHHHTTC-EEEEECSSCCHH--HH-HHHHTT--C-CEESSCCTTSC----C--CCSEEEECTTCCTT
T ss_pred HHHHHHHHHhCCC-eEEEEeCCCChh--HH-HHHHCC--C-eEEeeeccccc----C--CCCEEEEecCcCCC
Confidence 3356777878888 999999886322 11 244444 3 44333 22222 1 47998887765433
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.17 E-value=0.34 Score=38.43 Aligned_cols=75 Identities=24% Similarity=0.284 Sum_probs=44.9
Q ss_pred CCCeEEEEcCC-CCH-hHHHHHHhcCCeEEEEeCCH-------------------HHHHHHHHHHHhcCC--CcceEEEc
Q psy8370 81 GKTRVLDVGAG-IGR-ISKYLLAKHFDKIDLLEQSS-------------------KFIEQAKEEILKDCD--KLDKCYNV 137 (256)
Q Consensus 81 ~~~~vLDiG~G-~G~-~~~~l~~~~~~~v~~vD~s~-------------------~~~~~a~~~~~~~~~--~i~~~~~~ 137 (256)
.+.+||=+||| .|. .+..|+..|..+++.+|.+. .-.+.+.+++..... ++ ..+..
T Consensus 36 ~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i-~~~~~ 114 (426)
T d1yovb1 36 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNV-VPHFN 114 (426)
T ss_dssp HHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCC-EEECS
T ss_pred hcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCce-Eeeec
Confidence 35789999998 443 55556667888999998863 113555555554433 33 44444
Q ss_pred cccccCCCCCCCceeEEEec
Q psy8370 138 GIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 138 d~~~~~~~~~~~~~D~V~~~ 157 (256)
.+.+..... -..||+|++.
T Consensus 115 ~i~~~~~~~-~~~~DlVi~~ 133 (426)
T d1yovb1 115 KIQDFNDTF-YRQFHIIVCG 133 (426)
T ss_dssp CGGGBCHHH-HTTCSEEEEC
T ss_pred cccchHHHH-HHhcchheec
Confidence 444432111 1269999965
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=81.42 E-value=5.5 Score=26.64 Aligned_cols=121 Identities=12% Similarity=0.090 Sum_probs=64.8
Q ss_pred eEEEEcCCCC--HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhh
Q psy8370 84 RVLDVGAGIG--RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 161 (256)
Q Consensus 84 ~vLDiG~G~G--~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~ 161 (256)
.|-=||+|.= .++..|++.|+ +|++.|.+++..+...+.-.... . ..-.....+...... ..|.++....
T Consensus 4 nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~--~-~~~a~~~~~~~~~~~--~~~~ii~~~~-- 75 (176)
T d2pgda2 4 DIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEAKGT--K-VLGAHSLEEMVSKLK--KPRRIILLVK-- 75 (176)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTTTTS--S-CEECSSHHHHHHHBC--SSCEEEECSC--
T ss_pred cEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhccccc--c-ccchhhhhhhhhhhc--ccceEEEecC--
Confidence 4555666632 35555666677 89999999987766554322111 1 111112222211111 3566665421
Q ss_pred ccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 162 FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 162 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
..+.....++.+...+++|..++-..... ..+..++.+.+.+.|...++..
T Consensus 76 --~~~~v~~v~~~l~~~~~~g~iiid~sT~~--------------~~~~~~~~~~~~~~g~~~ldap 126 (176)
T d2pgda2 76 --AGQAVDNFIEKLVPLLDIGDIIIDGGNSE--------------YRDTMRRCRDLKDKGILFVGSG 126 (176)
T ss_dssp --TTHHHHHHHHHHHHHCCTTCEEEECSCCC--------------HHHHHHHHHHHHHTTCEEEEEE
T ss_pred --chHHHHHHHHHHHhccccCcEEEecCcch--------------hHHHHHHHHHHHhcCCceeccc
Confidence 11445567888899999887666431100 1122455667778888777643
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=81.17 E-value=5.4 Score=26.13 Aligned_cols=37 Identities=19% Similarity=0.484 Sum_probs=25.5
Q ss_pred CCeEEEEcCCC--CHhHHHHHHhcCCeEEEEeCCHHHHH
Q psy8370 82 KTRVLDVGAGI--GRISKYLLAKHFDKIDLLEQSSKFIE 118 (256)
Q Consensus 82 ~~~vLDiG~G~--G~~~~~l~~~~~~~v~~vD~s~~~~~ 118 (256)
+.+|-=||+|. +.++..++..+..++..+|++++..+
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~ 41 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPH 41 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcce
Confidence 46788899874 34555555556669999999876543
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=81.17 E-value=0.61 Score=34.83 Aligned_cols=56 Identities=7% Similarity=0.089 Sum_probs=36.3
Q ss_pred eEEEccccccCCCCCCCceeEEEec---hhh-----hccCH----HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 133 KCYNVGIQDFKPEDLNIKYDVIWIQ---WVL-----MFILD----EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 133 ~~~~~d~~~~~~~~~~~~~D~V~~~---~~l-----~~~~~----~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.++.+|..+....-.++++|+|+.. .+. ..... +.....+++++++|+|+|.+++.
T Consensus 14 ~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~ 81 (320)
T d1booa_ 14 SMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD 81 (320)
T ss_dssp EEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence 6778887654332223589999976 110 11111 23567899999999999999985
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=81.13 E-value=2.5 Score=29.99 Aligned_cols=67 Identities=9% Similarity=0.125 Sum_probs=43.7
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC--CCCCCceeEEE
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP--EDLNIKYDVIW 155 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~--~~~~~~~D~V~ 155 (256)
+++++|-.|++.|. .+..|++.|+ +|+.+|.+++.++.. .. .+...|+.+... .+..+..|+++
T Consensus 3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~l~~~---------~~-~~~~~Dv~~~~~~~~~~~g~iD~lV 71 (234)
T d1o5ia_ 3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELLKRS---------GH-RYVVCDLRKDLDLLFEKVKEVDILV 71 (234)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHT---------CS-EEEECCTTTCHHHHHHHSCCCSEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHhc---------CC-cEEEcchHHHHHHHHHHhCCCcEEE
Confidence 46888988987773 5666777787 899999997654321 22 566777654311 01124789988
Q ss_pred ech
Q psy8370 156 IQW 158 (256)
Q Consensus 156 ~~~ 158 (256)
.+.
T Consensus 72 nnA 74 (234)
T d1o5ia_ 72 LNA 74 (234)
T ss_dssp ECC
T ss_pred ecc
Confidence 763
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=81.09 E-value=3 Score=30.44 Aligned_cols=74 Identities=15% Similarity=0.137 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
+++++|=-|++.|. .+..|++.|+ +|+.+|.+++.++...+... .++ ..+..|+.+...... .+
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~---~~~-~~~~~Dv~~~~~~~~~~~~~~~~~g 78 (276)
T d1bdba_ 4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHG---DNV-LGIVGDVRSLEDQKQAASRCVARFG 78 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG---GGE-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcC---CCe-eEEecccccHHHHHHHHHHHHHHhC
Confidence 46788888887773 6677777787 89999999887766555443 244 677778765432111 24
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+++.+..
T Consensus 79 ~idilvnnAG 88 (276)
T d1bdba_ 79 KIDTLIPNAG 88 (276)
T ss_dssp CCCEEECCCC
T ss_pred Cccccccccc
Confidence 7899987643
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=81.05 E-value=2 Score=28.16 Aligned_cols=95 Identities=8% Similarity=0.011 Sum_probs=52.6
Q ss_pred CeEEEEcCCCCHhHHHHHH----hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC--CCCCCceeEEEe
Q psy8370 83 TRVLDVGAGIGRISKYLLA----KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP--EDLNIKYDVIWI 156 (256)
Q Consensus 83 ~~vLDiG~G~G~~~~~l~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~--~~~~~~~D~V~~ 156 (256)
.+|+=+|+ |..+..+++ .+. .++.+|.+++......+.... ..+ .++.+|..+... ..+-...|.|++
T Consensus 4 nHiII~G~--g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~--~~~-~vi~Gd~~d~~~L~~a~i~~a~~vi~ 77 (153)
T d1id1a_ 4 DHFIVCGH--SILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLG--DNA-DVIPGDSNDSSVLKKAGIDRCRAILA 77 (153)
T ss_dssp SCEEEECC--SHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHC--TTC-EEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhc--CCc-EEEEccCcchHHHHHhccccCCEEEE
Confidence 34555555 555555443 344 899999998654433333322 245 788898876532 111235788876
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.. +++.....+-...+.+.|...++..
T Consensus 78 ~~-----~~d~~n~~~~~~~r~~~~~~~iia~ 104 (153)
T d1id1a_ 78 LS-----DNDADNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp CS-----SCHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred cc-----ccHHHHHHHHHHHHHhCCCCceEEE
Confidence 52 1122223344455667788777764
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=80.90 E-value=0.098 Score=35.44 Aligned_cols=96 Identities=8% Similarity=-0.045 Sum_probs=52.1
Q ss_pred CeEEEEcCCC-C-HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhh
Q psy8370 83 TRVLDVGAGI-G-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 160 (256)
Q Consensus 83 ~~vLDiG~G~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l 160 (256)
.+|+=||+|. | .++..|++.|. +|+.++.++.-.+.. .............-..+..... +.+|+|+...--
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~D~iii~vka 73 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSV----NLVETDGSIFNESLTANDPDFL--ATSDLLLVTLKA 73 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEE----EEECTTSCEEEEEEEESCHHHH--HTCSEEEECSCG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhh----ccccCCccccccccccchhhhh--cccceEEEeecc
Confidence 4788899985 4 35555656666 899998876411100 0000011000000000111111 368999876332
Q ss_pred hccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 161 MFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
+ +....++.+...++++..++...+
T Consensus 74 ~-----~~~~~~~~l~~~~~~~~~Iv~~qN 98 (167)
T d1ks9a2 74 W-----QVSDAVKSLASTLPVTTPILLIHN 98 (167)
T ss_dssp G-----GHHHHHHHHHTTSCTTSCEEEECS
T ss_pred c-----chHHHHHhhccccCcccEEeeccC
Confidence 2 345788899999999887777643
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=80.42 E-value=4.5 Score=26.66 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=62.7
Q ss_pred eEEEEcCCCC--HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhh
Q psy8370 84 RVLDVGAGIG--RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 161 (256)
Q Consensus 84 ~vLDiG~G~G--~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~ 161 (256)
+|-=||+|.= .++..|++.|+ +|++.|.+++..+...+. + .....+..+.. . ..|+|++...
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~----~----~~~~~~~~e~~---~--~~d~ii~~v~-- 65 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAA----G----AETASTAKAIA---E--QCDVIITMLP-- 65 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT----T----CEECSSHHHHH---H--HCSEEEECCS--
T ss_pred EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHh----h----hhhcccHHHHH---h--CCCeEEEEcC--
Confidence 3555777643 35555666777 899999999877666542 1 12223333322 1 4688887521
Q ss_pred ccCHHHHHHHH---HHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 162 FILDEDIIKFL---NLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 162 ~~~~~~~~~~l---~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
+++.....+ ..+...++||..++-.... ...+..++.+.+.+.|...++.
T Consensus 66 --~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~--------------~p~~~~~~~~~~~~~g~~~vda 118 (161)
T d1vpda2 66 --NSPHVKEVALGENGIIEGAKPGTVLIDMSSI--------------APLASREISDALKAKGVEMLDA 118 (161)
T ss_dssp --SHHHHHHHHHSTTCHHHHCCTTCEEEECSCC--------------CHHHHHHHHHHHHTTTCEEEEC
T ss_pred --CHHHHHHHHhCCcchhhccCCCCEEEECCCC--------------CHHHHHHHHHHHHHcCCceecc
Confidence 123334444 3467778887665542110 1112345667777778776654
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=80.22 E-value=4.9 Score=26.16 Aligned_cols=83 Identities=13% Similarity=0.225 Sum_probs=47.5
Q ss_pred eEEEEcCCCCH--hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhh
Q psy8370 84 RVLDVGAGIGR--ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 161 (256)
Q Consensus 84 ~vLDiG~G~G~--~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~ 161 (256)
+|.=||||.=. ++..|.+.+..++++.|.+++..+...+.. .+ .. ..+.... . ..|+|+..
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~-----~~-~~-~~~~~~v----~--~~Div~la---- 64 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL-----GV-ET-SATLPEL----H--SDDVLILA---- 64 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT-----CC-EE-ESSCCCC----C--TTSEEEEC----
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc-----cc-cc-ccccccc----c--ccceEEEe----
Confidence 56678886432 334455566559999999998776655442 22 22 2232222 2 46988865
Q ss_pred ccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 162 FILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 162 ~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+++. .+..+.+-+++.+.++++
T Consensus 65 -vkP~----~~~~v~~~l~~~~~~viS 86 (152)
T d1yqga2 65 -VKPQ----DMEAACKNIRTNGALVLS 86 (152)
T ss_dssp -SCHH----HHHHHHTTCCCTTCEEEE
T ss_pred -cCHH----HHHHhHHHHhhcccEEee
Confidence 3333 334445556676777775
|