Psyllid ID: psy8378

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
MVGKHWMLGLLRYLGKCYNAAVTTESERGYSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLKCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSAWYYVRYLGSGGDPNVRLPDQPDGSRYCD
Secondary Structure (PSIPRED)
ccccccccccHHHHHHcccccHHHHHHcccccccccccEEEEccccccHHHHHccccccccccccccccccccccHHHHHcccccccccccccccccccHHHHHHcccccccccccEEEEEEEEEEHHHHHHHHccccccEEEccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccEEEEEEEEEEEEccccccHccccHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccEcHHHHHHHHHHHHccccccEEEccccccccccHHccccEccccccccHHccHHHccccccccccccccccccccccHccccEEEEEEccccccccccccccHHHHHccc
Coil and Loop (DISEMBL)
MVGKHWMLGLLRYLGKCYNaavttesergysrqeKCITALTTCTLEMEREMVKLLPEVLLNLSkisittsiaIPILEFVSMLTRLpklfsnfvgdqYMSVFAIcmpctnpfkynhytVSLAHHVIAVWFLKcrywgtpipmvhcpscgpvpvpyealpitlppspplplasnaewqhcscpkcghggarretdtmdtfVDSAWYYVRYLgsggdpnvrlpdqpdgsrycd
Flexible Loop (DISEMBL)
MVGKHWMLGLLRYLGKCYNAAVTtesergysrqekCITALTTCTLEMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLKCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSAWYYVRYLgsggdpnvrlpdqpdgsrycd
Low Complexity Region (SEG)
MVGKHWMLGLLRYLGKCYNAAVTTESERGYSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLKCRYWGTPIPMVHCPSCGPVPVPYEAlpitlppspplplASNAEWQHCSCPKCGHGGARRETDTMDTFVDSAWYYVRYLGSGGDPNVRLPDQPDGSRYCD
Disordered region (IsUnstruct)
***KHWMLGLLRYLGKCYNAAVTTESERGYSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLKCRYWGTPIPMVHCPSCGPVPVPYEALPITLP****LPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSAWYYVRYLGS*******************
Disordered Region (DISOPRED)
*********LLRYLGKCYNAAVTTESERGYSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLKCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSAWYYVRYLGSGGDPNVRLPDQPDGSRYCD
Disordered Region (DISEMBL)
MVGKHWMLGLLRYLGKCYNAAVT*********QEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLKCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSAWYYVRYLGSGGDPNVRLPDQPDGSRYCD
Disordered Region (DISPRO)
*VGKHWMLGLLRYLGKCYNAAVTTESERGYSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLKCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSAWYYVRYLGSGGDPNVRLPDQPDGS*YCD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGKHWMLGLLRYLGKCYNAAVTTESERGYSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLKCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSAWYYVRYLGSGGDPNVRLPDQPDGSRYCD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	230	2.2.26 [Sep-21-2011]
P49816	1809	Tuberin OS=Rattus norvegi	yes	N/A	0.526	0.066	0.487	3e-27
Q61037	1814	Tuberin OS=Mus musculus G	no	N/A	0.526	0.066	0.495	3e-27
P49815	1807	Tuberin OS=Homo sapiens G	yes	N/A	0.430	0.054	0.535	3e-27
Q8VDC0	902	Probable leucine--tRNA li	no	N/A	0.347	0.088	0.625	5e-26
Q15031	903	Probable leucine--tRNA li	no	N/A	0.339	0.086	0.633	5e-26
Q8DH61	857	Leucine--tRNA ligase OS=T	yes	N/A	0.347	0.093	0.579	8e-26
Q5RDP4	903	Probable leucine--tRNA li	no	N/A	0.347	0.088	0.625	8e-26
A9HWW6	885	Leucine--tRNA ligase OS=B	yes	N/A	0.352	0.091	0.586	1e-25
Q8FYQ7	877	Leucine--tRNA ligase OS=B	yes	N/A	0.326	0.085	0.617	1e-25
A9M845	877	Leucine--tRNA ligase OS=B	yes	N/A	0.326	0.085	0.617	1e-25

>sp|P49816|TSC2_RAT Tuberin OS=Rattus norvegicus GN=Tsc2 PE=1 SV=1

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/123 (48%), Positives = 82/123 (66%), Gaps = 2/123 (1%)

Query: 13  YLGKCYNAAVTTESERG--YSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTS 70
           YL K     +    E+G  Y    +C+ AL  C++EM   ++K LP +++ L+ IS T S
Sbjct: 779 YLDKTRQREMVYCLEQGLIYRCASQCVVALAICSVEMPDIIIKALPVLVVKLTHISATAS 838

Query: 71  IAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFL 130
           +AIP+LEF+S L RLP L+ NF  +QY SVFAI +P TNP K+N Y V LAHHVIA+WF+
Sbjct: 839 MAIPLLEFLSTLARLPHLYRNFAAEQYASVFAISLPYTNPSKFNQYIVCLAHHVIAMWFI 898

Query: 131 KCR 133
           +CR
Sbjct: 899 RCR 901

In complex with TSC1, inhibits the nutrient-mediated or growth factor-stimulated phosphorylation of S6K1 and EIF4EBP1 by negatively regulating mTORC1 signaling. Acts as a GTPase-activating protein (GAP) for the small GTPase RHEB, a direct activator of the protein kinase activity of mTORC1 (By similarity). Implicated as a tumor suppressor. Involved in microtubule-mediated protein transport, but this seems to be due to unregulated mTOR signaling (By similarity). Specifically stimulates the intrinsic GTPase activity of the Ras-related protein RAP1A and RAB5. Suggesting a possible mechanism for its role in regulating cellular growth.
Rattus norvegicus (taxid: 10116)

>sp|Q61037|TSC2_MOUSE Tuberin OS=Mus musculus GN=Tsc2 PE=1 SV=1

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/123 (49%), Positives = 83/123 (67%), Gaps = 2/123 (1%)

Query: 13  YLGKCYNAAVTTESERG--YSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTS 70
           YL K     +    E+G  Y    +C+ AL  C++EM   ++K LP +++ L+ IS T S
Sbjct: 779 YLDKTRQREMVYCLEQGLIYRCASQCVVALAICSVEMPDIIIKALPVLVVKLTHISATAS 838

Query: 71  IAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFL 130
           +AIP+LEF+S L RLP L+ NFV +QY SVFAI +P TNP K+N Y V LAHHVIA+WF+
Sbjct: 839 MAIPLLEFLSTLARLPHLYRNFVPEQYASVFAISLPYTNPSKFNQYIVCLAHHVIAMWFI 898

Query: 131 KCR 133
           +CR
Sbjct: 899 RCR 901

In complex with TSC1, inhibits the nutrient-mediated or growth factor-stimulated phosphorylation of S6K1 and EIF4EBP1 by negatively regulating mTORC1 signaling. Acts as a GTPase-activating protein (GAP) for the small GTPase RHEB, a direct activator of the protein kinase activity of mTORC1. Implicated as a tumor suppressor. Involved in microtubule-mediated protein transport, but this seems to be due to unregulated mTOR signaling (By similarity). Specifically stimulates the intrinsic GTPase activity of the Ras-related protein RAP1A and RAB5. Suggesting a possible mechanism for its role in regulating cellular growth.

Mus musculus (taxid: 10090)

>sp|P49815|TSC2_HUMAN Tuberin OS=Homo sapiens GN=TSC2 PE=1 SV=2

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 75/99 (75%)

Query: 35  KCITALTTCTLEMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSMLTRLPKLFSNFVG 94
           +C+ AL+ C++EM   ++K LP +++ L+ IS T S+A+P+LEF+S L RLP L+ NF  
Sbjct: 803 QCVVALSICSVEMPDIIIKALPVLVVKLTHISATASMAVPLLEFLSTLARLPHLYRNFAA 862

Query: 95  DQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLKCR 133
           +QY SVFAI +P TNP K+N Y V LAHHVIA+WF++CR
Sbjct: 863 EQYASVFAISLPYTNPSKFNQYIVCLAHHVIAMWFIRCR 901

In complex with TSC1, inhibits the nutrient-mediated or growth factor-stimulated phosphorylation of S6K1 and EIF4EBP1 by negatively regulating mTORC1 signaling. Acts as a GTPase-activating protein (GAP) for the small GTPase RHEB, a direct activator of the protein kinase activity of mTORC1. Implicated as a tumor suppressor. Involved in microtubule-mediated protein transport, but this seems to be due to unregulated mTOR signaling. Stimulates weakly the intrinsic GTPase activity of the Ras-related proteins RAP1A and RAB5 in vitro. Mutations in TSC2 lead to constitutive activation of RAP1A in tumors.

Homo sapiens (taxid: 9606)

>sp|Q8VDC0|SYLM_MOUSE Probable leucine--tRNA ligase, mitochondrial OS=Mus musculus GN=Lars2 PE=2 SV=1

 Score =  117 bits (294), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 55/88 (62%), Positives = 65/88 (73%), Gaps = 8/88 (9%)

Query: 128 WFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPL------PLASNAEWQHCSC 180
           W + + RYWGTPIP+VHCP+CGPVPVP + LP+ LP    L      PLA+  EW +CSC
Sbjct: 446 WLISRQRYWGTPIPIVHCPACGPVPVPLQDLPVILPSIASLTGRGGSPLATALEWVNCSC 505

Query: 181 PKCGHGGARRETDTMDTFVDSAWYYVRY 208
           P+C  G A+RETDTMDTFVDSAWYY RY
Sbjct: 506 PRC-KGSAKRETDTMDTFVDSAWYYFRY 532

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|Q15031|SYLM_HUMAN Probable leucine--tRNA ligase, mitochondrial OS=Homo sapiens GN=LARS2 PE=1 SV=2

 Score =  117 bits (294), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 65/90 (72%), Gaps = 12/90 (13%)

Query: 128 WFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPP--------SPPLPLASNAEWQHC 178
           W + + RYWGTPIP+VHCP CGP PVP E LP+TLP          PPL +AS  EW +C
Sbjct: 447 WLISRQRYWGTPIPIVHCPVCGPTPVPLEDLPVTLPNIASFTGKGGPPLAMAS--EWVNC 504

Query: 179 SCPKCGHGGARRETDTMDTFVDSAWYYVRY 208
           SCP+C  G A+RETDTMDTFVDSAWYY RY
Sbjct: 505 SCPRC-KGAAKRETDTMDTFVDSAWYYFRY 533

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|Q8DH61|SYL_THEEB Leucine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=leuS PE=3 SV=1

 Score =  117 bits (292), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 51/88 (57%), Positives = 60/88 (68%), Gaps = 8/88 (9%)

Query: 128 WFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPS------PPLPLASNAEWQHCSC 180
           W + + RYWG PIP++HCP CGPVPVP   LP+ LP         P PLA  A W+   C
Sbjct: 423 WLISRQRYWGVPIPIIHCPQCGPVPVPRSELPVLLPEEVEFTGRGPSPLAKLAAWRDVPC 482

Query: 181 PKCGHGGARRETDTMDTFVDSAWYYVRY 208
           PKCG G A+RETDTMDTF+DS+WYY RY
Sbjct: 483 PKCG-GPAQRETDTMDTFIDSSWYYFRY 509

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|Q5RDP4|SYLM_PONAB Probable leucine--tRNA ligase, mitochondrial OS=Pongo abelii GN=LARS2 PE=2 SV=1

 Score =  117 bits (292), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 55/88 (62%), Positives = 63/88 (71%), Gaps = 8/88 (9%)

Query: 128 WFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPL------PLASNAEWQHCSC 180
           W + + RYWGTPIP+VHCP CGP PVP E LP+TLP           PLA  +EW +CSC
Sbjct: 447 WLISRQRYWGTPIPIVHCPVCGPTPVPLEDLPVTLPNIASFTGKGGSPLAMASEWVNCSC 506

Query: 181 PKCGHGGARRETDTMDTFVDSAWYYVRY 208
           P+C  G A+RETDTMDTFVDSAWYY RY
Sbjct: 507 PRC-KGAAKRETDTMDTFVDSAWYYFRY 533

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|A9HWW6|SYL_BORPD Leucine--tRNA ligase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=leuS PE=3 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/87 (58%), Positives = 60/87 (68%), Gaps = 6/87 (6%)

Query: 133 RYWGTPIPMVHCPSCGPVPVPYEALPITLPPS-----PPLPLASNAEWQHCSCPKCGHGG 187
           RYWGTPIP++HC  CGPVPVP + LP+ LP          PLA N  +  CSCP+CG   
Sbjct: 444 RYWGTPIPIIHCADCGPVPVPEQDLPVVLPDDLIPDGSGNPLAKNEAFLSCSCPRCGK-P 502

Query: 188 ARRETDTMDTFVDSAWYYVRYLGSGGD 214
           ARRETDTMDTFVDS+WY++RY   G D
Sbjct: 503 ARRETDTMDTFVDSSWYFMRYTSPGND 529

Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) (taxid: 340100)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|Q8FYQ7|SYL_BRUSU Leucine--tRNA ligase OS=Brucella suis biovar 1 (strain 1330) GN=leuS PE=3 SV=1

 Score =  116 bits (290), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/81 (61%), Positives = 56/81 (69%), Gaps = 6/81 (7%)

Query: 133 RYWGTPIPMVHCPSCGPVPVPYEALPITLPPS-----PPLPLASNAEWQHCSCPKCGHGG 187
           RYWG PIPM+HC SCG  PVP   LP+ LP       P  PL  +A W+H  CPKCG G 
Sbjct: 440 RYWGCPIPMIHCESCGVNPVPRADLPVKLPDDVEFDRPGNPLDRHATWRHVKCPKCG-GD 498

Query: 188 ARRETDTMDTFVDSAWYYVRY 208
           ARRETDTMDTFVDS+WYY R+
Sbjct: 499 ARRETDTMDTFVDSSWYYTRF 519

Brucella suis biovar 1 (strain 1330) (taxid: 204722)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|A9M845|SYL_BRUC2 Leucine--tRNA ligase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=leuS PE=3 SV=1

 Score =  116 bits (290), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/81 (61%), Positives = 56/81 (69%), Gaps = 6/81 (7%)

Query: 133 RYWGTPIPMVHCPSCGPVPVPYEALPITLPPS-----PPLPLASNAEWQHCSCPKCGHGG 187
           RYWG PIPM+HC SCG  PVP   LP+ LP       P  PL  +A W+H  CPKCG G 
Sbjct: 440 RYWGCPIPMIHCESCGVNPVPRADLPVKLPDDVEFDRPGNPLDRHATWRHVKCPKCG-GD 498

Query: 188 ARRETDTMDTFVDSAWYYVRY 208
           ARRETDTMDTFVDS+WYY R+
Sbjct: 499 ARRETDTMDTFVDSSWYYTRF 519

Brucella canis (strain ATCC 23365 / NCTC 10854) (taxid: 483179)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
328708613	1839	PREDICTED: tuberin-like [Acyrthosiphon p	0.543	0.067	0.648	1e-39
242017335	1782	tuberin, putative [Pediculus humanus cor	0.430	0.055	0.808	3e-39
307197891	1711	Tuberin [Harpegnathos saltator]	0.534	0.071	0.651	1e-38
307180793	1725	Tuberin [Camponotus floridanus]	0.430	0.057	0.787	2e-38
350397985	1838	PREDICTED: tuberin-like [Bombus impatien	0.534	0.066	0.643	2e-38
380029021	1823	PREDICTED: LOW QUALITY PROTEIN: tuberin-	0.534	0.067	0.643	3e-38
383848103	1835	PREDICTED: LOW QUALITY PROTEIN: tuberin-	0.534	0.067	0.643	3e-38
328793583	1815	PREDICTED: tuberin [Apis mellifera]	0.534	0.067	0.643	3e-38
340728427	1018	PREDICTED: tuberin-like [Bombus terrestr	0.782	0.176	0.497	4e-38
332023061	1823	Tuberin [Acromyrmex echinatior]	0.430	0.054	0.767	2e-37

>gi|328708613|ref|XP_001944956.2| PREDICTED: tuberin-like [Acyrthosiphon pisum]

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 85/131 (64%), Positives = 99/131 (75%), Gaps = 6/131 (4%)

Query: 35  KCIT----ALTTCTLEMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSMLTRLPKLFS 90
           +CIT    ALTTC LEM   MVKLLPEVLLN+SK+S TT IA+PILEF+SML+RLPK+FS
Sbjct: 792 RCITPVVMALTTCILEMRDVMVKLLPEVLLNMSKLSATTQIAVPILEFLSMLSRLPKVFS 851

Query: 91  NFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLKCR--YWGTPIPMVHCPSCG 148
           NFV DQYM+VFAI +P TNPFKYNHYTVSLAH VIA+WFLKCR  +    +  +H     
Sbjct: 852 NFVADQYMAVFAITLPYTNPFKYNHYTVSLAHRVIAIWFLKCRTSFRRNFVEFIHKGLKQ 911

Query: 149 PVPVPYEALPI 159
            V VP+E   I
Sbjct: 912 NVLVPFEGRTI 922

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017335|ref|XP_002429145.1| tuberin, putative [Pediculus humanus corporis] gi|212514018|gb|EEB16407.1| tuberin, putative [Pediculus humanus corporis]

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/99 (80%), Positives = 87/99 (87%)

Query: 35  KCITALTTCTLEMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSMLTRLPKLFSNFVG 94
           +C+ ALTTCTLEM   M KLLPEVLLNLSKIS T  IAIPILEF+S LT LPK+F++FVG
Sbjct: 806 QCVMALTTCTLEMRDAMYKLLPEVLLNLSKISATVVIAIPILEFLSTLTSLPKVFASFVG 865

Query: 95  DQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLKCR 133
           DQYMSVFAI +P TNPFKYNHYTVSLAHHVIAVWFLKCR
Sbjct: 866 DQYMSVFAIALPYTNPFKYNHYTVSLAHHVIAVWFLKCR 904

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197891|gb|EFN78990.1| Tuberin [Harpegnathos saltator]

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/129 (65%), Positives = 96/129 (74%), Gaps = 6/129 (4%)

Query: 5   HWMLGLLRYLGKCYNAAVTTESERGYSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSK 64
           H    L + L KC    +T +         +C+T+LT CTLEM   M KLL EVLLNLSK
Sbjct: 661 HLEPNLQQRLIKCLEVGLTAKCA------SQCVTSLTICTLEMRDAMNKLLTEVLLNLSK 714

Query: 65  ISITTSIAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHV 124
           IS T  IAIPILEF+S LTRLPK+F++F+GDQYMSVFAI +P TNPFKYNHYTVSLAHHV
Sbjct: 715 ISATVYIAIPILEFLSTLTRLPKVFASFIGDQYMSVFAILLPYTNPFKYNHYTVSLAHHV 774

Query: 125 IAVWFLKCR 133
           IAVWFLKCR
Sbjct: 775 IAVWFLKCR 783

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180793|gb|EFN68657.1| Tuberin [Camponotus floridanus]

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/99 (78%), Positives = 87/99 (87%)

Query: 35  KCITALTTCTLEMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSMLTRLPKLFSNFVG 94
           +C+T+LT CTLEM   M KLL EVLLNLSKIS T  IAIPILEF+S LTRLPK+F++F+G
Sbjct: 702 QCVTSLTICTLEMRDAMNKLLTEVLLNLSKISATVYIAIPILEFLSTLTRLPKVFASFIG 761

Query: 95  DQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLKCR 133
           DQYMSVFAI +P TNPFKYNHYTVSLAHHVIAVWFLKCR
Sbjct: 762 DQYMSVFAILLPYTNPFKYNHYTVSLAHHVIAVWFLKCR 800

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397985|ref|XP_003485052.1| PREDICTED: tuberin-like [Bombus impatiens]

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/129 (64%), Positives = 96/129 (74%), Gaps = 6/129 (4%)

Query: 5   HWMLGLLRYLGKCYNAAVTTESERGYSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSK 64
           H    L + L KC    +T +         +C+T+LTTC LEM   M KLL EVLLNLSK
Sbjct: 794 HLEPNLQQRLIKCLEVGLTAKCA------SQCVTSLTTCILEMRDAMNKLLSEVLLNLSK 847

Query: 65  ISITTSIAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHV 124
           IS T  IAIPILEF+S LTRLPK+F++F+GDQYMSVFAI +P TNPFKY+HYTVSLAHHV
Sbjct: 848 ISATVHIAIPILEFLSTLTRLPKVFASFIGDQYMSVFAILLPYTNPFKYDHYTVSLAHHV 907

Query: 125 IAVWFLKCR 133
           IAVWFLKCR
Sbjct: 908 IAVWFLKCR 916

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029021|ref|XP_003698181.1| PREDICTED: LOW QUALITY PROTEIN: tuberin-like [Apis florea]

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/129 (64%), Positives = 96/129 (74%), Gaps = 6/129 (4%)

Query: 5   HWMLGLLRYLGKCYNAAVTTESERGYSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSK 64
           H    L + L KC    +T +         +C+T+LTTC LEM   M KLL EVLLNLSK
Sbjct: 783 HLEPNLQQRLIKCLEVGLTAKCA------SQCVTSLTTCILEMRDAMNKLLSEVLLNLSK 836

Query: 65  ISITTSIAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHV 124
           IS T  IAIPILEF+S LTRLPK+F++F+GDQYMSVFAI +P TNPFKY+HYTVSLAHHV
Sbjct: 837 ISATVHIAIPILEFLSTLTRLPKVFASFIGDQYMSVFAILLPYTNPFKYDHYTVSLAHHV 896

Query: 125 IAVWFLKCR 133
           IAVWFLKCR
Sbjct: 897 IAVWFLKCR 905

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848103|ref|XP_003699691.1| PREDICTED: LOW QUALITY PROTEIN: tuberin-like [Megachile rotundata]

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/129 (64%), Positives = 96/129 (74%), Gaps = 6/129 (4%)

Query: 5   HWMLGLLRYLGKCYNAAVTTESERGYSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSK 64
           H    L + L KC    +T +         +C+T+LTTC LEM   M KLL EVLLNLSK
Sbjct: 789 HLEPNLQQRLIKCLEVGLTAKC------ASQCVTSLTTCILEMRDAMNKLLREVLLNLSK 842

Query: 65  ISITTSIAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHV 124
           IS T  IAIPILEF+S LTRLPK+F++F+GDQYMSVFAI +P TNPFKY+HYTVSLAHHV
Sbjct: 843 ISATVHIAIPILEFLSTLTRLPKVFASFIGDQYMSVFAILLPYTNPFKYDHYTVSLAHHV 902

Query: 125 IAVWFLKCR 133
           IAVWFLKCR
Sbjct: 903 IAVWFLKCR 911

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793583|ref|XP_395739.4| PREDICTED: tuberin [Apis mellifera]

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/129 (64%), Positives = 96/129 (74%), Gaps = 6/129 (4%)

Query: 5   HWMLGLLRYLGKCYNAAVTTESERGYSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSK 64
           H    L + L KC    +T +         +C+T+LTTC LEM   M KLL EVLLNLSK
Sbjct: 772 HLEPNLQQRLIKCLEVGLTAKCA------SQCVTSLTTCILEMRDAMNKLLSEVLLNLSK 825

Query: 65  ISITTSIAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHV 124
           IS T  IAIPILEF+S LTRLPK+F++F+GDQYMSVFAI +P TNPFKY+HYTVSLAHHV
Sbjct: 826 ISATVHIAIPILEFLSTLTRLPKVFASFIGDQYMSVFAILLPYTNPFKYDHYTVSLAHHV 885

Query: 125 IAVWFLKCR 133
           IAVWFLKCR
Sbjct: 886 IAVWFLKCR 894

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728427|ref|XP_003402526.1| PREDICTED: tuberin-like [Bombus terrestris]

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 94/189 (49%), Positives = 116/189 (61%), Gaps = 9/189 (4%)

Query: 9   GLLRYLGKCYNAAVTTESERGYSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISIT 68
            L + L KC    +T +         +C+T+LTTC LEM   M KLL EVLLNLSKIS T
Sbjct: 787 NLQQRLIKCLEVGLTAKC------ASQCVTSLTTCILEMRDAMNKLLSEVLLNLSKISAT 840

Query: 69  TSIAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVW 128
             IAIPILEF+S LTRLPK+F++F+GDQYMSVFAI +P TNPFKY+HYTVSLAHHVIAVW
Sbjct: 841 VHIAIPILEFLSTLTRLPKVFASFIGDQYMSVFAILLPYTNPFKYDHYTVSLAHHVIAVW 900

Query: 129 FLKCR--YWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHG 186
           FLKCR  +    +  +       V VP+E   +       +   S+   +  S  + G  
Sbjct: 901 FLKCRLPFRRDFVRFITTGLKANVIVPFEEGHLMKSDFNFINEDSSNRKRSSSLTEQGSR 960

Query: 187 GARRETDTM 195
           G RRE   M
Sbjct: 961 G-RRERPIM 968

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023061|gb|EGI63326.1| Tuberin [Acromyrmex echinatior]

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/99 (76%), Positives = 87/99 (87%)

Query: 35  KCITALTTCTLEMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSMLTRLPKLFSNFVG 94
           +C+T+LT CTLEM   M KLL EVLLNLSKIS T  IAIPI+EF+S LTRLPK+F++F+G
Sbjct: 804 QCVTSLTICTLEMRDAMNKLLSEVLLNLSKISATVYIAIPIIEFLSTLTRLPKVFASFIG 863

Query: 95  DQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLKCR 133
           DQYMSVFAI +P TNPFKYNHYTVSLA+HVIAVWFLKCR
Sbjct: 864 DQYMSVFAILLPYTNPFKYNHYTVSLAYHVIAVWFLKCR 902

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
UNIPROTKB|O42180	1782	TSC2 "Putative uncharacterized	0.434	0.056	0.58	8.4e-28
UNIPROTKB|B4DIL8	1692	TSC2 "cDNA FLJ59538, highly si	0.526	0.071	0.471	4.9e-26
UNIPROTKB|F1P0G2	1769	TSC2 "Uncharacterized protein"	0.526	0.068	0.479	5.4e-26
UNIPROTKB|H3BMQ0	1751	TSC2 "Tuberin" [Homo sapiens (	0.526	0.069	0.471	5.4e-26
MGI|MGI:102548	1814	Tsc2 "tuberous sclerosis 2" [M	0.526	0.066	0.495	5.6e-26
UNIPROTKB|F1NGI4	1835	TSC2 "Uncharacterized protein"	0.526	0.065	0.479	5.6e-26
UNIPROTKB|P49815	1807	TSC2 "Tuberin" [Homo sapiens (	0.526	0.066	0.471	5.9e-26
UNIPROTKB|F1RFB2	1815	TSC2 "Uncharacterized protein"	0.526	0.066	0.479	7.1e-26
UNIPROTKB|J9NXS0	1746	TSC2 "Uncharacterized protein"	0.526	0.069	0.487	8.6e-26
RGD|3908	1809	Tsc2 "tuberous sclerosis 2" [R	0.526	0.066	0.487	9e-26

UNIPROTKB|O42180 TSC2 "Putative uncharacterized protein TSC2" [Takifugu rubripes (taxid:31033)]

 Score = 326 (119.8 bits), Expect = 8.4e-28, P = 8.4e-28
 Identities = 58/100 (58%), Positives = 80/100 (80%)

Query:    34 EKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSMLTRLPKLFSNFV 93
             ++C+ ALT CT+EM   M+KLLP +++ L+ IS T ++A P+LEF+S L RLP L++NFV
Sbjct:   767 KQCVVALTMCTVEMPDIMIKLLPSLMVKLTHISATVAMASPMLEFLSTLVRLPHLYANFV 826

Query:    94 GDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLKCR 133
              +QY+SVFAI +P TNP K+N Y VSLAHHVIA+WF++CR
Sbjct:   827 AEQYVSVFAISLPYTNPSKFNQYIVSLAHHVIAMWFIRCR 866

GO:0005096 "GTPase activator activity" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0008285 "negative regulation of cell proliferation" evidence=IBA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IBA

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IBA

GO:0033596 "TSC1-TSC2 complex" evidence=IBA

GO:0043491 "protein kinase B signaling cascade" evidence=IBA

GO:0043547 "positive regulation of GTPase activity" evidence=IBA

GO:0045792 "negative regulation of cell size" evidence=IBA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IBA

GO:0048009 "insulin-like growth factor receptor signaling pathway" evidence=IBA

GO:0051726 "regulation of cell cycle" evidence=IBA

UNIPROTKB|B4DIL8 TSC2 "cDNA FLJ59538, highly similar to Tuberin" [Homo sapiens (taxid:9606)]

 Score = 303 (111.7 bits), Expect = 4.9e-26, Sum P(2) = 4.9e-26
 Identities = 58/123 (47%), Positives = 83/123 (67%)

Query:    13 YLGKCYNAAVTTESERGYSRQ--EKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTS 70
             YL K     +    E+G   +   +C+ AL+ C++EM   ++K LP +++ L+ IS T S
Sbjct:   730 YLDKTKQREMVYCLEQGLIHRCASQCVVALSICSVEMPDIIIKALPVLVVKLTHISATAS 789

Query:    71 IAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFL 130
             +A+P+LEF+S L RLP L+ NF  +QY SVFAI +P TNP K+N Y V LAHHVIA+WF+
Sbjct:   790 MAVPLLEFLSTLARLPHLYRNFAAEQYASVFAISLPYTNPSKFNQYIVCLAHHVIAMWFI 849

Query:   131 KCR 133
             +CR
Sbjct:   850 RCR 852

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IEA

GO:0033596 "TSC1-TSC2 complex" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1P0G2 TSC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 309 (113.8 bits), Expect = 5.4e-26, P = 5.4e-26
 Identities = 59/123 (47%), Positives = 82/123 (66%)

Query:    13 YLGKCYNAAVTTESERG--YSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTS 70
             YL K     +    E G  Y    +C+ AL+ C++EM   ++K LP +++ L+ IS T +
Sbjct:   781 YLDKAKQREIVYCLEHGLIYRCANQCVVALSVCSVEMPDIIIKALPVLIVKLTHISATAN 840

Query:    71 IAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFL 130
             +AIP+LEF+S L RLP L+ NF  +QY SVFAI +P TNP K+N Y V LAHHVIA+WF+
Sbjct:   841 MAIPLLEFLSTLARLPHLYRNFAAEQYASVFAISLPYTNPSKFNQYIVCLAHHVIAMWFI 900

Query:   131 KCR 133
             +CR
Sbjct:   901 RCR 903

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IEA

GO:0033596 "TSC1-TSC2 complex" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|H3BMQ0 TSC2 "Tuberin" [Homo sapiens (taxid:9606)]

 Score = 303 (111.7 bits), Expect = 5.4e-26, Sum P(2) = 5.4e-26
 Identities = 58/123 (47%), Positives = 83/123 (67%)

Query:    13 YLGKCYNAAVTTESERGYSRQ--EKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTS 70
             YL K     +    E+G   +   +C+ AL+ C++EM   ++K LP +++ L+ IS T S
Sbjct:   790 YLDKTKQREMVYCLEQGLIHRCASQCVVALSICSVEMPDIIIKALPVLVVKLTHISATAS 849

Query:    71 IAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFL 130
             +A+P+LEF+S L RLP L+ NF  +QY SVFAI +P TNP K+N Y V LAHHVIA+WF+
Sbjct:   850 MAVPLLEFLSTLARLPHLYRNFAAEQYASVFAISLPYTNPSKFNQYIVCLAHHVIAMWFI 909

Query:   131 KCR 133
             +CR
Sbjct:   910 RCR 912

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IEA

GO:0033596 "TSC1-TSC2 complex" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

MGI|MGI:102548 Tsc2 "tuberous sclerosis 2" [Mus musculus (taxid:10090)]

 Score = 309 (113.8 bits), Expect = 5.6e-26, P = 5.6e-26
 Identities = 61/123 (49%), Positives = 83/123 (67%)

Query:    13 YLGKCYNAAVTTESERG--YSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTS 70
             YL K     +    E+G  Y    +C+ AL  C++EM   ++K LP +++ L+ IS T S
Sbjct:   779 YLDKTRQREMVYCLEQGLIYRCASQCVVALAICSVEMPDIIIKALPVLVVKLTHISATAS 838

Query:    71 IAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFL 130
             +AIP+LEF+S L RLP L+ NFV +QY SVFAI +P TNP K+N Y V LAHHVIA+WF+
Sbjct:   839 MAIPLLEFLSTLARLPHLYRNFVPEQYASVFAISLPYTNPSKFNQYIVCLAHHVIAMWFI 898

Query:   131 KCR 133
             +CR
Sbjct:   899 RCR 901

GO:0001666 "response to hypoxia" evidence=IMP

GO:0001843 "neural tube closure" evidence=IMP

GO:0005096 "GTPase activator activity" evidence=ISO;IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IBA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005901 "caveola" evidence=ISO

GO:0006469 "negative regulation of protein kinase activity" evidence=IMP

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0006953 "acute-phase response" evidence=ISO

GO:0007165 "signal transduction" evidence=ISO

GO:0007507 "heart development" evidence=IMP

GO:0008104 "protein localization" evidence=IDA

GO:0008285 "negative regulation of cell proliferation" evidence=ISO;IGI;IMP

GO:0014065 "phosphatidylinositol 3-kinase cascade" evidence=IMP

GO:0014067 "negative regulation of phosphatidylinositol 3-kinase cascade" evidence=IMP

GO:0016020 "membrane" evidence=ISO

GO:0019902 "phosphatase binding" evidence=ISO

GO:0030030 "cell projection organization" evidence=ISO

GO:0030100 "regulation of endocytosis" evidence=IMP

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISO;IBA

GO:0030425 "dendrite" evidence=ISO

GO:0030426 "growth cone" evidence=ISO

GO:0032007 "negative regulation of TOR signaling cascade" evidence=ISO;IMP

GO:0033596 "TSC1-TSC2 complex" evidence=ISO;IBA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0043407 "negative regulation of MAP kinase activity" evidence=ISO

GO:0043491 "protein kinase B signaling cascade" evidence=IGI;IMP

GO:0043547 "positive regulation of GTPase activity" evidence=IBA

GO:0044430 "cytoskeletal part" evidence=ISO

GO:0045121 "membrane raft" evidence=ISO

GO:0045184 "establishment of protein localization" evidence=ISO

GO:0045792 "negative regulation of cell size" evidence=ISO;IBA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IMP

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0048009 "insulin-like growth factor receptor signaling pathway" evidence=IGI;IMP

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=ISO

GO:0050918 "positive chemotaxis" evidence=IMP

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=ISO

GO:0051726 "regulation of cell cycle" evidence=ISO;IBA

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IGI;IMP

GO:0071889 "14-3-3 protein binding" evidence=IDA

UNIPROTKB|F1NGI4 TSC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 309 (113.8 bits), Expect = 5.6e-26, P = 5.6e-26
 Identities = 59/123 (47%), Positives = 82/123 (66%)

Query:    13 YLGKCYNAAVTTESERG--YSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTS 70
             YL K     +    E G  Y    +C+ AL+ C++EM   ++K LP +++ L+ IS T +
Sbjct:   781 YLDKAKQREIVYCLEHGLIYRCANQCVVALSVCSVEMPDIIIKALPVLIVKLTHISATAN 840

Query:    71 IAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFL 130
             +AIP+LEF+S L RLP L+ NF  +QY SVFAI +P TNP K+N Y V LAHHVIA+WF+
Sbjct:   841 MAIPLLEFLSTLARLPHLYRNFAAEQYASVFAISLPYTNPSKFNQYIVCLAHHVIAMWFI 900

Query:   131 KCR 133
             +CR
Sbjct:   901 RCR 903

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006469 "negative regulation of protein kinase activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0014065 "phosphatidylinositol 3-kinase cascade" evidence=IEA

GO:0014067 "negative regulation of phosphatidylinositol 3-kinase cascade" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019902 "phosphatase binding" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IEA

GO:0033596 "TSC1-TSC2 complex" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043491 "protein kinase B signaling cascade" evidence=IEA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IEA

GO:0048009 "insulin-like growth factor receptor signaling pathway" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0050918 "positive chemotaxis" evidence=IEA

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0071889 "14-3-3 protein binding" evidence=IEA

UNIPROTKB|P49815 TSC2 "Tuberin" [Homo sapiens (taxid:9606)]

 Score = 303 (111.7 bits), Expect = 5.9e-26, Sum P(2) = 5.9e-26
 Identities = 58/123 (47%), Positives = 83/123 (67%)

Query:    13 YLGKCYNAAVTTESERGYSRQ--EKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTS 70
             YL K     +    E+G   +   +C+ AL+ C++EM   ++K LP +++ L+ IS T S
Sbjct:   779 YLDKTKQREMVYCLEQGLIHRCASQCVVALSICSVEMPDIIIKALPVLVVKLTHISATAS 838

Query:    71 IAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFL 130
             +A+P+LEF+S L RLP L+ NF  +QY SVFAI +P TNP K+N Y V LAHHVIA+WF+
Sbjct:   839 MAVPLLEFLSTLARLPHLYRNFAAEQYASVFAISLPYTNPSKFNQYIVCLAHHVIAMWFI 898

Query:   131 KCR 133
             +CR
Sbjct:   899 RCR 901

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0006953 "acute-phase response" evidence=IEA

GO:0014065 "phosphatidylinositol 3-kinase cascade" evidence=IEA

GO:0030030 "cell projection organization" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043407 "negative regulation of MAP kinase activity" evidence=IEA

GO:0044430 "cytoskeletal part" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

GO:0071889 "14-3-3 protein binding" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=ISS;IBA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IBA

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IBA

GO:0043491 "protein kinase B signaling cascade" evidence=ISS;IBA

GO:0045792 "negative regulation of cell size" evidence=IBA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=ISS;IBA

GO:0048009 "insulin-like growth factor receptor signaling pathway" evidence=ISS;IBA

GO:0051726 "regulation of cell cycle" evidence=IBA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005096 "GTPase activator activity" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0006606 "protein import into nucleus" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0033596 "TSC1-TSC2 complex" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0001843 "neural tube closure" evidence=ISS

GO:0006469 "negative regulation of protein kinase activity" evidence=ISS

GO:0007507 "heart development" evidence=ISS

GO:0008104 "protein localization" evidence=ISS

GO:0014067 "negative regulation of phosphatidylinositol 3-kinase cascade" evidence=ISS

GO:0030100 "regulation of endocytosis" evidence=ISS

GO:0050918 "positive chemotaxis" evidence=ISS

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=ISS

GO:0019902 "phosphatase binding" evidence=IDA

GO:0006897 "endocytosis" evidence=TAS

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0007050 "cell cycle arrest" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=TAS

UNIPROTKB|F1RFB2 TSC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 308 (113.5 bits), Expect = 7.1e-26, P = 7.1e-26
 Identities = 59/123 (47%), Positives = 82/123 (66%)

Query:    13 YLGKCYNAAVTTESERG--YSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTS 70
             YL K     +    E+G  Y    +C+ AL  C++EM   ++K LP +++ L+ IS T S
Sbjct:   779 YLDKTRQREMVYCLEQGLIYRCASQCVVALAVCSVEMPDVIIKALPVLVVKLTHISATAS 838

Query:    71 IAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFL 130
             +A+P+LEF+S L RLP L+ NF  +QY SVFAI +P TNP K+N Y V LAHHVIA+WF+
Sbjct:   839 MAVPLLEFLSTLARLPHLYRNFAAEQYASVFAISLPYTNPSKFNQYIVCLAHHVIAMWFI 898

Query:   131 KCR 133
             +CR
Sbjct:   899 RCR 901

GO:0071889 "14-3-3 protein binding" evidence=IEA

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0050918 "positive chemotaxis" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0048009 "insulin-like growth factor receptor signaling pathway" evidence=IEA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IEA

GO:0043491 "protein kinase B signaling cascade" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0033596 "TSC1-TSC2 complex" evidence=IEA

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0019902 "phosphatase binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0014067 "negative regulation of phosphatidylinositol 3-kinase cascade" evidence=IEA

GO:0014065 "phosphatidylinositol 3-kinase cascade" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006469 "negative regulation of protein kinase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|J9NXS0 TSC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 307 (113.1 bits), Expect = 8.6e-26, P = 8.6e-26
 Identities = 60/123 (48%), Positives = 82/123 (66%)

Query:    13 YLGKCYNAAVTTESERG--YSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTS 70
             YL K     +    E+G  Y    +C+ AL  C++EM   ++K LP +++ L+ IS T S
Sbjct:   779 YLDKTRQREMVYCLEQGLIYRCASQCVVALAICSVEMPDIIIKALPVLVVKLTHISATAS 838

Query:    71 IAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFL 130
             +AIP+LEF+S L RLP L+ NF  +QY SVFAI +P TNP K+N Y V LAHHVIA+WF+
Sbjct:   839 MAIPLLEFLSTLARLPHLYRNFAAEQYASVFAISLPYTNPSKFNQYIVCLAHHVIAMWFI 898

Query:   131 KCR 133
             +CR
Sbjct:   899 RCR 901

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0033596 "TSC1-TSC2 complex" evidence=IEA

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

RGD|3908 Tsc2 "tuberous sclerosis 2" [Rattus norvegicus (taxid:10116)]

 Score = 307 (113.1 bits), Expect = 9.0e-26, P = 9.0e-26
 Identities = 60/123 (48%), Positives = 82/123 (66%)

Query:    13 YLGKCYNAAVTTESERG--YSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTS 70
             YL K     +    E+G  Y    +C+ AL  C++EM   ++K LP +++ L+ IS T S
Sbjct:   779 YLDKTRQREMVYCLEQGLIYRCASQCVVALAICSVEMPDIIIKALPVLVVKLTHISATAS 838

Query:    71 IAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFL 130
             +AIP+LEF+S L RLP L+ NF  +QY SVFAI +P TNP K+N Y V LAHHVIA+WF+
Sbjct:   839 MAIPLLEFLSTLARLPHLYRNFAAEQYASVFAISLPYTNPSKFNQYIVCLAHHVIAMWFI 898

Query:   131 KCR 133
             +CR
Sbjct:   899 RCR 901

GO:0001666 "response to hypoxia" evidence=IEA;ISO

GO:0001843 "neural tube closure" evidence=IEA;ISO

GO:0005096 "GTPase activator activity" evidence=IEA;ISO;IDA

GO:0005097 "Rab GTPase activator activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA;ISO;IBA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0005901 "caveola" evidence=IDA

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0006606 "protein import into nucleus" evidence=IEA;ISO

GO:0006953 "acute-phase response" evidence=IMP

GO:0007165 "signal transduction" evidence=IDA

GO:0007507 "heart development" evidence=IEA;ISO

GO:0008104 "protein localization" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=ISO;IMP

GO:0014065 "phosphatidylinositol 3-kinase cascade" evidence=IEA;ISO

GO:0014067 "negative regulation of phosphatidylinositol 3-kinase cascade" evidence=IEA;ISO

GO:0016020 "membrane" evidence=ISO

GO:0019902 "phosphatase binding" evidence=ISO;ISS

GO:0030030 "cell projection organization" evidence=IMP

GO:0030100 "regulation of endocytosis" evidence=IEA;ISO

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IEA;ISO;IDA

GO:0032851 "positive regulation of Rab GTPase activity" evidence=TAS

GO:0033596 "TSC1-TSC2 complex" evidence=IEA;ISO;IBA

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0043005 "neuron projection" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0043407 "negative regulation of MAP kinase activity" evidence=IMP

GO:0043491 "protein kinase B signaling cascade" evidence=ISO;IBA

GO:0044430 "cytoskeletal part" evidence=IDA

GO:0045121 "membrane raft" evidence=IDA

GO:0045184 "establishment of protein localization" evidence=IMP

GO:0045792 "negative regulation of cell size" evidence=IMP

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=ISO;IBA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0048009 "insulin-like growth factor receptor signaling pathway" evidence=ISO;IBA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;IDA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IDA

GO:0050918 "positive chemotaxis" evidence=IEA;ISO

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IMP;IDA

GO:0051291 "protein heterooligomerization" evidence=IMP;IDA

GO:0051726 "regulation of cell cycle" evidence=IMP

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA;ISO

GO:0071889 "14-3-3 protein binding" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49815	TSC2_HUMAN	No assigned EC number	0.5353	0.4304	0.0547	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.1.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	230
pfam03542	356	pfam03542, Tuberin, Tuberin	5e-45
PRK00390	805	PRK00390, leuS, leucyl-tRNA synthetase; Validated	7e-43
TIGR00396	842	TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba	1e-31
COG0495	814	COG0495, LeuS, Leucyl-tRNA synthetase [Translation	6e-27
PLN02563	963	PLN02563, PLN02563, aminoacyl-tRNA ligase	7e-14
PRK13208	800	PRK13208, valS, valyl-tRNA synthetase; Reviewed	3e-09
COG0060	933	COG0060, IleS, Isoleucyl-tRNA synthetase [Translat	1e-05
cd00817	382	cd00817, ValRS_core, catalytic core domain of valy	2e-05
COG0525	877	COG0525, ValS, Valyl-tRNA synthetase [Translation,	8e-05
cd00812	314	cd00812, LeuRS_core, catalytic core domain of leuc	9e-05
cd00818	338	cd00818, IleRS_core, catalytic core domain of isol	0.002

>gnl|CDD|217605 pfam03542, Tuberin, Tuberin

 Score =  153 bits (388), Expect = 5e-45
 Identities = 59/110 (53%), Positives = 76/110 (69%), Gaps = 1/110 (0%)

Query: 25  ESERGYSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSMLTR 84
           E          CI+ LT   LEM   ++  LP++L+ LSK+S T  +A+P+LEF+S L  
Sbjct: 244 EQGLITRCASVCISTLTILLLEMPDVLMSKLPDLLVELSKMSATVLMALPVLEFLSTLIH 303

Query: 85  LPK-LFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLKCR 133
           LPK L++NF   QYMSVFAI +P TNP +Y+HYTVSLAHHVIA WF+KCR
Sbjct: 304 LPKHLYANFTETQYMSVFAISLPYTNPARYDHYTVSLAHHVIAAWFIKCR 353

Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterized by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation either TSC1 or TSC2 tumour suppressor gene. The TSC2 gene codes for tuberin and interacts with hamartin pfam04388, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking. Length = 356

>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated

 Score =  153 bits (390), Expect = 7e-43
 Identities = 51/89 (57%), Positives = 60/89 (67%), Gaps = 10/89 (11%)

Query: 133 RYWGTPIPMVHCPSCGPVPVPYEALPITLP----PSPPL-PLASNAEWQHCSCPKCGHGG 187
           RYWG PIP++HC  CG VPVP E LP+ LP    P     PLA + EW + +CPKCG   
Sbjct: 424 RYWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKCG-KP 482

Query: 188 ARRETDTMDTFVDSAWYYVRYLGSGGDPN 216
           ARRETDTMDTFV S+WYY+RY     DP+
Sbjct: 483 ARRETDTMDTFVGSSWYYLRYT----DPH 507

Length = 805

>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family

 Score =  121 bits (305), Expect = 1e-31
 Identities = 43/83 (51%), Positives = 51/83 (61%), Gaps = 7/83 (8%)

Query: 133 RYWGTPIPMVHCPSCGPVPVPYEALPITLP------PSPPLPLASNAEWQHCSCPKCGHG 186
           RYWG PIP++HC   G VPVP E LP+ LP           PL+   EW + +CP C   
Sbjct: 421 RYWGEPIPIIHCEDGGVVPVPEEDLPVILPEDVVYDGDGGSPLSRIPEWVNVTCPSC-GK 479

Query: 187 GARRETDTMDTFVDSAWYYVRYL 209
            A RETDTMDTF  S+WYY+RYL
Sbjct: 480 PALRETDTMDTFAGSSWYYLRYL 502

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches [Protein synthesis, tRNA aminoacylation]. Length = 842

>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score =  107 bits (270), Expect = 6e-27
 Identities = 43/89 (48%), Positives = 52/89 (58%), Gaps = 12/89 (13%)

Query: 133 RYWGTPIPMVHCPSCGPVPVPYEALPITLP----PSPPL-PLASNAEWQHCSCPKCGHGG 187
           RYWG PIP++HC  CG VPVP + LP+ LP          PL  + EW   S P      
Sbjct: 428 RYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLPD---ST 484

Query: 188 ARRETDTMDTFVDSAWYYVRYLGSGGDPN 216
           A RETDTMDTF+DS+WYY+R+     DP 
Sbjct: 485 AYRETDTMDTFIDSSWYYLRFF----DPI 509

Length = 814

>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase

 Score = 69.9 bits (171), Expect = 7e-14
 Identities = 41/96 (42%), Positives = 51/96 (53%), Gaps = 14/96 (14%)

Query: 129 FLKCRYWGTPIPMVHCPSCG-PVPVPYEALPITLP------PS--PPLPLASNAEWQHCS 179
           F + RYWG PIP+V     G PVPVP   LP+TLP      P+     PLA    W +  
Sbjct: 509 FARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGEPPLAKAVSWVNTV 568

Query: 180 CPKCGHGGARRETDTMDTFVDSAWYYVRYLGSGGDP 215
            P  G   ARRET+TM  +  S WYY+R++    DP
Sbjct: 569 DPSSG-KPARRETNTMPQWAGSCWYYLRFM----DP 599

Length = 963

>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed

 Score = 56.4 bits (137), Expect = 3e-09
 Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 10/70 (14%)

Query: 133 RYWGTPIPMVHCPSCG-PVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRE 191
           RY+GTPIP+ +C  CG P+    E LP+        P           CP+CG  G   E
Sbjct: 404 RYFGTPIPVWYCKDCGHPILPDEEDLPVD-------PTKDEPPG--YKCPQCGSPGFEGE 454

Query: 192 TDTMDTFVDS 201
           TD MDT+  S
Sbjct: 455 TDVMDTWATS 464

Length = 800

>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 133 RYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQH------CSCPKCGHG 186
           RYWG PIP+ +C   G + V  E L   L          +   +         CP+ G  
Sbjct: 463 RYWGVPIPVWYCKETGEILVITEEL-EELVGQLVEEKGIDDWHRPDIDELLPPCPEDG-K 520

Query: 187 GARRETDTMDTFVDS--AWYYV 206
             RR  D +D + DS    Y V
Sbjct: 521 EYRRVPDVLDVWFDSGSTPYAV 542

Length = 933

>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 14/71 (19%)

Query: 133 RYWGTPIPMVHCPSCGPVPV-PYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRE 191
            +WG  IP  +C   G   V   E   I                   +C  CG    +++
Sbjct: 218 LWWGHRIPAWYCKDGGHWVVAREEDEAIDKA-------------APEACVPCGGEELKQD 264

Query: 192 TDTMDTFVDSA 202
            D +DT+  S+
Sbjct: 265 EDVLDTWFSSS 275

Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 382

>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 17/70 (24%)

Query: 133 RYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRET 192
            +WG  IP+ +C  CG V V                 A        +  KC      ++ 
Sbjct: 405 LWWGHRIPVWYCKECGNVVV-----------------AEEEPEDPAAAEKCPKEELEQDE 447

Query: 193 DTMDTFVDSA 202
           D +DT+  S+
Sbjct: 448 DVLDTWFSSS 457

Length = 877

>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases

 Score = 42.2 bits (100), Expect = 9e-05
 Identities = 19/77 (24%), Positives = 21/77 (27%), Gaps = 50/77 (64%)

Query: 133 RYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRET 192
           RYWGTPIP                                                   T
Sbjct: 173 RYWGTPIPW--------------------------------------------------T 182

Query: 193 DTMDTFVDSAWYYVRYL 209
           DTM++  DS WYY RY 
Sbjct: 183 DTMESLSDSTWYYARYT 199

Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314

>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 20/76 (26%), Positives = 24/76 (31%), Gaps = 38/76 (50%)

Query: 133 RYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRET 192
           RYWGTPIP+ +C  CG V V                                    RR  
Sbjct: 198 RYWGTPIPVWYCEDCGEVLV------------------------------------RRVP 221

Query: 193 DTMDTFVDS--AWYYV 206
           D +D + DS    Y  
Sbjct: 222 DVLDVWFDSGSMPYAQ 237

Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 338

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	230
PF03542	356	Tuberin: Tuberin; InterPro: IPR018515 Initiation o	100.0
KOG0435|consensus	876		99.95
PLN02563	963	aminoacyl-tRNA ligase	99.93
TIGR00396	842	leuS_bact leucyl-tRNA synthetase, eubacterial and	99.93
KOG3687|consensus	1697		99.91
PRK00390	805	leuS leucyl-tRNA synthetase; Validated	99.89
COG0495	814	LeuS Leucyl-tRNA synthetase [Translation, ribosoma	99.81
COG0060	933	IleS Isoleucyl-tRNA synthetase [Translation, ribos	99.48
PRK05743	912	ileS isoleucyl-tRNA synthetase; Reviewed	99.47
PRK13208	800	valS valyl-tRNA synthetase; Reviewed	99.43
PTZ00419	995	valyl-tRNA synthetase-like protein; Provisional	99.32
COG0525	877	ValS Valyl-tRNA synthetase [Translation, ribosomal	99.32
PRK06039	975	ileS isoleucyl-tRNA synthetase; Reviewed	99.29
PTZ00427	1205	isoleucine-tRNA ligase, putative; Provisional	99.28
PLN02882	1159	aminoacyl-tRNA ligase	99.27
PRK14900	1052	valS valyl-tRNA synthetase; Provisional	99.26
KOG0433|consensus	937		99.24
PLN02381	1066	valyl-tRNA synthetase	99.23
PRK13804	961	ileS isoleucyl-tRNA synthetase; Provisional	99.23
TIGR00392	861	ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA	99.2
PLN02843	974	isoleucyl-tRNA synthetase	99.19
PF00133	601	tRNA-synt_1: tRNA synthetases class I (I, L, M and	99.16
TIGR00422	861	valS valyl-tRNA synthetase. The valyl-tRNA synthet	99.12
cd00817	382	ValRS_core catalytic core domain of valyl-tRNA syn	99.09
PLN02943	958	aminoacyl-tRNA ligase	99.04
PRK05729	874	valS valyl-tRNA synthetase; Reviewed	98.99
KOG0434|consensus	1070		98.92
KOG0432|consensus	995		98.28
cd00818	338	IleRS_core catalytic core domain of isoleucyl-tRNA	98.14
KOG3687|consensus	1697		97.62
PLN02959	1084	aminoacyl-tRNA ligase	97.35
PF13603	185	tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; P	96.45
cd00668	312	Ile_Leu_Val_MetRS_core catalytic core domain of is	95.67
PRK12300	897	leuS leucyl-tRNA synthetase; Reviewed	95.51
cd00812	314	LeuRS_core catalytic core domain of leucyl-tRNA sy	91.12
PRK12267	648	methionyl-tRNA synthetase; Reviewed	89.92
PRK11893	511	methionyl-tRNA synthetase; Reviewed	82.86

>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH

Probab=100.00  E-value=7.1e-45  Score=336.27  Aligned_cols=128  Identities=49%  Similarity=0.820  Sum_probs=125.7

Q ss_pred             cccccchhhhHHHHHHHHHhhccccccCccchhhHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccccchhhhhHHHHHHH
Q psy8378           2 VGKHWMLGLLRYLGKCYNAAVTTESERGYSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSM   81 (230)
Q Consensus         2 y~~~~~~~~q~~iv~~~~~gl~~~~~~~~~~~~~Ci~aLtic~~E~p~s~~k~l~~il~~ls~i~t~~~mAvpilEFl~~   81 (230)
                      ||+||+|++||+||+||+.||++++      |++|||||||||+|||++|+|+||+||.|||||+|++.||+||||||+.
T Consensus       227 Yh~~~~k~~qd~iV~~l~~GL~s~~------a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~tt~~~Ai~ILEFLs~  300 (356)
T PF03542_consen  227 YHSHFSKQEQDEIVRALESGLGSKT------AKPCIHALTICCYEMPDSMKKLLPSILLKLSKISTTPNMAIHILEFLSS  300 (356)
T ss_pred             HHHhcCHhHHHHHHHHHHHHhccCc------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Confidence            9999999999999999999998866      9999999999999999999999999999999999999999999999999


Q ss_pred             hcCCC-ccccCcchhhhhhhhcccccCCCCCCCCCccHHHHHHHHHHHHhhcccC
Q psy8378          82 LTRLP-KLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLKCRYW  135 (230)
Q Consensus        82 l~~lp-~l~~nf~~~~y~~vfgi~~~~in~~~l~~~~~~lA~~vI~~Wflr~R~w  135 (230)
                      |+++| ++|+||++|||++|||||++|+|+.++++|++++|||+|..||+|+|+.
T Consensus       301 L~~lP~~ly~nF~~~~y~~VF~I~l~Y~~~~ry~~yiv~LA~hvi~~WF~~crl~  355 (356)
T PF03542_consen  301 LSRLPNHLYSNFTEDEYKRVFAIALPYTQPSRYSQYIVSLAHHVIAMWFLKCRLP  355 (356)
T ss_pred             HhhCcHHHhcCCCHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999 9999999999999999999999999999999999999999999999974

In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity

>KOG0435|consensus

Probab=99.95  E-value=4.9e-29  Score=242.09  Aligned_cols=159  Identities=38%  Similarity=0.749  Sum_probs=124.7

Q ss_pred             HhhccccchhhhhH-----HHHHHHhcCCC------ccccCcchhhhhhhhcc----------cccCCCCCCCCCccHHH
Q psy8378          62 LSKISITTSIAIPI-----LEFVSMLTRLP------KLFSNFVGDQYMSVFAI----------CMPCTNPFKYNHYTVSL  120 (230)
Q Consensus        62 ls~i~t~~~mAvpi-----lEFl~~l~~lp------~l~~nf~~~~y~~vfgi----------~~~~in~~~l~~~~~~l  120 (230)
                      ++-=+|++.|++|.     .||+..+ .+.      ..+.|+..+.+..-|.-          -+.+.+...+++|+++ 
T Consensus       339 ~~~~gt~a~m~~P~hd~rD~ela~~~-~~~~~~~~~~~f~~~~K~~~~~~~tn~~~~q~a~~~l~~~~~~~g~g~~~vs-  416 (876)
T KOG0435|consen  339 LDPYGTGAVMGAPGHDQRDKELAQKI-GIKWIICIEVIFTNFGKKNEQKAFTNLDIRQNAALKLFQFAERKGVGGYVVS-  416 (876)
T ss_pred             ccCCCcceeeeccCcccchhHHHhcc-cceeEEEEeeeecchhhhhccccccchhHHHHHHHHHHHHHHhcCCCcceec-
Confidence            34458899999999     8999884 333      12233322222222210          1233445577888876 


Q ss_pred             HHHHHHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCC-----CCCCCCCCcccccccCCCCCCCCCceecCCc
Q psy8378         121 AHHVIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPP-----SPPLPLASNAEWQHCSCPKCGHGGARRETDT  194 (230)
Q Consensus       121 A~~vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~-----~~~~p~g~~~~w~~~~~~~~g~~~~~retDt  194 (230)
                        .++.||.+ ||||||+||||++|++||.++|++++||+.||+     ..++|+.....|.++.||+||+ ..+|||||
T Consensus       417 --~kLkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~-pAkRETDT  493 (876)
T KOG0435|consen  417 --YKLKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGE-PAKRETDT  493 (876)
T ss_pred             --chhhhhhhhhhhccCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCccCCC-cccccccc
Confidence              46899988 899999999999999999999999999999996     2348999999999999999996 79999999


Q ss_pred             cccccccchhhhhhcCCCCCCCCCCCCCcccccc
Q psy8378         195 MDTFVDSAWYYVRYLGSGGDPNVRLPDQPDGSRY  228 (230)
Q Consensus       195 mD~WfdSgw~~~ry~~p~~~~~~~~~~~~~~~~y  228 (230)
                      ||||+||+|||+||+||+|.+..   +|.+.+.|
T Consensus       494 MDTFvDSsWYYlRylDpkN~e~~---~d~a~a~k  524 (876)
T KOG0435|consen  494 MDTFVDSSWYYLRYLDPKNPEEP---FDKAKAKK  524 (876)
T ss_pred             cchhhccceeeEeecCCCCcccc---cchhhhhc
Confidence            99999999999999999999887   99987665

>PLN02563 aminoacyl-tRNA ligase

Probab=99.93  E-value=6.9e-27  Score=238.91  Aligned_cols=154  Identities=31%  Similarity=0.610  Sum_probs=120.9

Q ss_pred             ccccchhhhhH-----HHHHHHhcCCC--ccccC------cchhhhhhhhcccccCCCCCC----CCCccHHHHHHHHHH
Q psy8378          65 ISITTSIAIPI-----LEFVSMLTRLP--KLFSN------FVGDQYMSVFAICMPCTNPFK----YNHYTVSLAHHVIAV  127 (230)
Q Consensus        65 i~t~~~mAvpi-----lEFl~~l~~lp--~l~~n------f~~~~y~~vfgi~~~~in~~~----l~~~~~~lA~~vI~~  127 (230)
                      -|||++|++|+     +||++.. +||  .++..      ..+..|.. .|   ..+|++.    |+|+.+.+|...|..
T Consensus       414 ~GTGaVm~~PaHd~~D~~~a~k~-~Lpi~~vI~~~d~~~~~~~~~y~~-~G---~l~ns~~~~~~~~Gl~~~eA~~~Ii~  488 (963)
T PLN02563        414 YGTGAIMAVPAHDTRDFEFAQKF-DLPIKWVVKPADGNEDDAEKAYTG-EG---VIVNSSSSGLDINGLSSKEAAKKVIE  488 (963)
T ss_pred             CCCCeEEEcCCCCHHHHHHHHHc-CCCceeeeccCccccccccccccC-ce---eEecCCCcccccCCcCHHHHHHHHHH
Confidence            39999999999     9999998 888  55521      11123332 35   4557765    999999999877776


Q ss_pred             H------------------Hh-hcccCCCccceEecCCCC-cccCCCCCCCCCCCC--------CCCCCCCCcccccccC
Q psy8378         128 W------------------FL-KCRYWGTPIPMVHCPSCG-PVPVPYEALPITLPP--------SPPLPLASNAEWQHCS  179 (230)
Q Consensus       128 W------------------fl-r~R~wg~pIPi~~~~~~~-~~~v~~~~Lp~~lp~--------~~~~p~g~~~~w~~~~  179 (230)
                      |                  ++ ||||||+|||||||++|| .+.+++++||+.||+        .+.+|+....+|....
T Consensus       489 ~L~~~g~~~~~v~y~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g~~pl~~~~~~~~~~  568 (963)
T PLN02563        489 WLEETGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGEPPLAKAVSWVNTV  568 (963)
T ss_pred             HHHhCCCCCCeeEecCCCceEeeecccCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCCCCchhcchhhhcCc
Confidence            5                  44 899999999999999988 566777889988873        2445777778888778


Q ss_pred             CCCCCCCCceecCCccccccccchhhhhhcCCCCCCCCCCCCCccccc
Q psy8378         180 CPKCGHGGARRETDTMDTFVDSAWYYVRYLGSGGDPNVRLPDQPDGSR  227 (230)
Q Consensus       180 ~~~~g~~~~~retDtmD~WfdSgw~~~ry~~p~~~~~~~~~~~~~~~~  227 (230)
                      ||+||+ .++||||||||||||||||+||++|+|++..   ++++..+
T Consensus       569 ~p~cg~-~~~RetDtmDtw~~Sswy~~r~~~p~~~~~~---~~~~~~~  612 (963)
T PLN02563        569 DPSSGK-PARRETNTMPQWAGSCWYYLRFMDPKNSNAL---VDKEKEK  612 (963)
T ss_pred             CcCCCC-CcEECCCcCCchhhccHHHHHHhCCCccccc---cCHHHHh
Confidence            999995 7999999999999999999999999987665   6655443

>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family

Probab=99.93  E-value=1.1e-26  Score=235.03  Aligned_cols=147  Identities=38%  Similarity=0.778  Sum_probs=117.2

Q ss_pred             hccccchhhhhH-----HHHHHHhcCCC--cccc----CcchhhhhhhhcccccCCCCCCCCCccHHHHHHHHHH-----
Q psy8378          64 KISITTSIAIPI-----LEFVSMLTRLP--KLFS----NFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAV-----  127 (230)
Q Consensus        64 ~i~t~~~mAvpi-----lEFl~~l~~lp--~l~~----nf~~~~y~~vfgi~~~~in~~~l~~~~~~lA~~vI~~-----  127 (230)
                      .-|||++|++|+     ++|++.. +||  .++.    ++..+.|. -.|   .++|++.|+|..+..|-..|..     
T Consensus       326 ~~GTG~V~~~Pahd~~D~~~~~k~-~L~i~~vi~~~~~~~~~~~~~-~~G---~~~~~~~~~Gl~~~~A~~~Ii~~L~~~  400 (842)
T TIGR00396       326 SYGTGAVMGVPAHDERDFEFAQKY-KLPIKVVIDPAGKNLKTQAFT-EDG---VLVNSGEFNGLNSSEAREAIIAMLEKE  400 (842)
T ss_pred             CCCCCeEEEcCCCCHHHHHHHHHh-CCCcceeeCCccccccccccc-CCc---eEecchhcCCCCHHHHHHHHHHHHHHc
Confidence            349999999999     9999998 788  4443    22223443 246   5667788888888877766654     


Q ss_pred             -------------HHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCC------CCCCCCCcccccccCCCCCCCCC
Q psy8378         128 -------------WFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPS------PPLPLASNAEWQHCSCPKCGHGG  187 (230)
Q Consensus       128 -------------Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~------~~~p~g~~~~w~~~~~~~~g~~~  187 (230)
                                   |++ |||+||+|||||||++|+.+.+++++||+.+|+.      +.+|+.....|....||+||+ .
T Consensus       401 g~~~~~v~yrlrDW~ISRQRyWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~-~  479 (842)
T TIGR00396       401 GKGKRKVNYRLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGK-P  479 (842)
T ss_pred             CCCCceEEeecccceeecccccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCcCccCCC-C
Confidence                         555 8999999999999999998888999999988852      335667777887778999985 6


Q ss_pred             ceecCCccccccccchhhhhhcCCCCCCC
Q psy8378         188 ARRETDTMDTFVDSAWYYVRYLGSGGDPN  216 (230)
Q Consensus       188 ~~retDtmD~WfdSgw~~~ry~~p~~~~~  216 (230)
                      ++||+|||||||||||||+||++|+|+..
T Consensus       480 ~~retDtmDtw~dSswy~~r~~~p~~~~~  508 (842)
T TIGR00396       480 ALRETDTMDTFAGSSWYYLRYLDPKNTDQ  508 (842)
T ss_pred             cEeCCCCCCCcccCCHHHHHhhCCCCcCC
Confidence            99999999999999999999999997543

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.

>KOG3687|consensus

Probab=99.91  E-value=1.4e-25  Score=223.58  Aligned_cols=133  Identities=43%  Similarity=0.736  Sum_probs=129.1

Q ss_pred             cccccchhhhHHHHHHHHHhhccccccCccchhhHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccccchhhhhHHHHHHH
Q psy8378           2 VGKHWMLGLLRYLGKCYNAAVTTESERGYSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSM   81 (230)
Q Consensus         2 y~~~~~~~~q~~iv~~~~~gl~~~~~~~~~~~~~Ci~aLtic~~E~p~s~~k~l~~il~~ls~i~t~~~mAvpilEFl~~   81 (230)
                      ||.+|++++|.+||.|+.+||.+++      |..||++||||.+|||+.++|.||+++.+|++++.+..+|.|.|||++.
T Consensus       728 yh~~lQ~~~~~~~I~~l~q~li~~~------aSVcv~~lsi~~Lemp~~~~~~LpD~v~Q~t~~s~t~~LaTP~leFlS~  801 (1697)
T KOG3687|consen  728 YHNYLQKTKQREMIYCLEQGLIHRC------ASVCVVALSICSLEMPDIIIKALPDLVVQLTHISATASLATPLLEFLST  801 (1697)
T ss_pred             HHHhcCCcchhhHHHHHHHHHhhhh------HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhhcccHHHHHH
Confidence            8999999999999999999999998      9999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCccccCcchhhhhhhhcccccCCCCCCCCCccHHHHHHHHHHHHhhcccCCCccc
Q psy8378          82 LTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLKCRYWGTPIP  140 (230)
Q Consensus        82 l~~lp~l~~nf~~~~y~~vfgi~~~~in~~~l~~~~~~lA~~vI~~Wflr~R~wg~pIP  140 (230)
                      |.+||++|.||+.++|+.||+|+++|.||.++++|++.+|+|||..||+++|+.-|.=.
T Consensus       802 l~~L~hlF~nF~a~~~~~vfai~lpyt~P~k~~~y~v~LahhvIa~wfi~c~lp~r~~f  860 (1697)
T KOG3687|consen  802 LARLPHLFRNFAAEQYASVFAISLPYTNPSKFNQYIVCLAHHVIAMWFIRCRLPFRKDF  860 (1697)
T ss_pred             HHHHHHHHHHHhhcCceEEEEEecCCCCcccccchhhhhhhhHhhhhhhheecchhhhh
Confidence            99999999999999999999999999999999999999999999999999998776533

>PRK00390 leuS leucyl-tRNA synthetase; Validated

Probab=99.89  E-value=1.1e-23  Score=212.54  Aligned_cols=147  Identities=41%  Similarity=0.802  Sum_probs=111.6

Q ss_pred             ccccchhhhhH-----HHHHHHhcCCC--ccccC------cchhhhhhhhcccccCCCCCCCCCccHHHHHHHHH-----
Q psy8378          65 ISITTSIAIPI-----LEFVSMLTRLP--KLFSN------FVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIA-----  126 (230)
Q Consensus        65 i~t~~~mAvpi-----lEFl~~l~~lp--~l~~n------f~~~~y~~vfgi~~~~in~~~l~~~~~~lA~~vI~-----  126 (230)
                      -|||++|++|+     ++|++.. +||  .++..      .++..|.. .|   .++|++.|+|..+..|-..|.     
T Consensus       329 ~GTG~V~~~Pah~~~D~~~~~~~-~L~~~~~i~~~g~~~~~~~~~~~~-~g---~~~~~~~~~Gl~~~~a~~~Ii~~L~~  403 (805)
T PRK00390        329 YGTGAVMAVPAHDQRDFEFAKKY-GLPIKPVIEPGDGDEDISEEAYTG-DG---VLINSGELDGLDSEEAKEAIIAWLEE  403 (805)
T ss_pred             CCCCeEEEcCCCCHHHHHHHHHc-CCCceeeeCCCCcccccccccccC-Ce---EEEeccccCCCCHHHHHHHHHHHHHH
Confidence            49999999999     9999988 788  44421      22223332 35   445666778877777665554     


Q ss_pred             -------------HHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCC----C-CCCCCCcccccccCCCCCCCCC
Q psy8378         127 -------------VWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPS----P-PLPLASNAEWQHCSCPKCGHGG  187 (230)
Q Consensus       127 -------------~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~----~-~~p~g~~~~w~~~~~~~~g~~~  187 (230)
                                   +|++ |||+||+|||||||++||.+.+++++||+.+|+.    + .+|+.....|....|+.||+ .
T Consensus       404 ~g~~~~~v~~~l~DW~ISRQR~WG~PIPi~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~  482 (805)
T PRK00390        404 KGLGKRKVNYRLRDWGISRQRYWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKCGK-P  482 (805)
T ss_pred             cCCCCCceEEECCCccccccccCCCceeEEEECCCCceeCchHhhhhhhhhhcccCCCCChhhhchhhhCCCccccCC-C
Confidence                         5777 8999999999999999998888888998877742    1 23555566676667888885 7


Q ss_pred             ceecCCccccccccchhhhhhcCCCCCCCC
Q psy8378         188 ARRETDTMDTFVDSAWYYVRYLGSGGDPNV  217 (230)
Q Consensus       188 ~~retDtmD~WfdSgw~~~ry~~p~~~~~~  217 (230)
                      ++||+|||||||||||||++|++|+|++..
T Consensus       483 ~~re~Dv~DtwfdSsw~~~~~~~p~~~~~~  512 (805)
T PRK00390        483 ARRETDTMDTFVGSSWYYLRYTDPHNDEAP  512 (805)
T ss_pred             ceeCCcccccccccccHHHHhcCcccccCc
Confidence            999999999999999999999999875543

>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=1.2e-20  Score=189.54  Aligned_cols=166  Identities=35%  Similarity=0.605  Sum_probs=131.1

Q ss_pred             HhhHHHHH--HHhhccccchhhhhH-----HHHHHHhcCCC--cccc-C--cchhhhhhhhcccccCCCCCCCCCccHHH
Q psy8378          53 KLLPEVLL--NLSKISITTSIAIPI-----LEFVSMLTRLP--KLFS-N--FVGDQYMSVFAICMPCTNPFKYNHYTVSL  120 (230)
Q Consensus        53 k~l~~il~--~ls~i~t~~~mAvpi-----lEFl~~l~~lp--~l~~-n--f~~~~y~~vfgi~~~~in~~~l~~~~~~l  120 (230)
                      +.+|-+..  -+.--+||+.|+||.     |||+... +||  .++. .  -.+..|. ..|   ..|||+.++|.....
T Consensus       322 e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y-~l~i~~vi~~~~~~~~~~~~-~~g---~linS~~~~gl~~e~  396 (814)
T COG0495         322 EKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKY-KLPIKKVIMPEGTVGKKVYE-GEG---VLINSGGLDGLDYEE  396 (814)
T ss_pred             CcCCEEEeCcccccccccceecCCCCCchhhHHHHhc-CCCeEEEEecCCCcccceec-cCc---eEeccccccCcchhH
Confidence            44444433  233459999999999     9999987 899  4442 1  2244555 677   489998899988886


Q ss_pred             HHHHHH------------------HH-HhhcccCCCccceEecCCCCcccCCCCCCCCCCCCC-----CCCCCCCccccc
Q psy8378         121 AHHVIA------------------VW-FLKCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPS-----PPLPLASNAEWQ  176 (230)
Q Consensus       121 A~~vI~------------------~W-flr~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~-----~~~p~g~~~~w~  176 (230)
                      |..++.                  +| +.||||||.||||++|++|+...++++.||+.||+.     ..+|+..+..|.
T Consensus       397 a~~~~~~~l~~~~~~q~~v~Y~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~  476 (814)
T COG0495         397 AKVKIRCGLVKRGLGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWV  476 (814)
T ss_pred             HHHHHHHhHHHhcCCceEEecccchHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcceE
Confidence            655444                  46 668999999999999999999999999999999972     136999999999


Q ss_pred             ccCCCCCCCCCceecCCccccccccchhhhhhcCCCCCCCCCCCCCcccccc
Q psy8378         177 HCSCPKCGHGGARRETDTMDTFVDSAWYYVRYLGSGGDPNVRLPDQPDGSRY  228 (230)
Q Consensus       177 ~~~~~~~g~~~~~retDtmD~WfdSgw~~~ry~~p~~~~~~~~~~~~~~~~y  228 (230)
                      .+.||.   ....|+|||||+|++|+|||+||.||.|..  .+|.+++..+|
T Consensus       477 ~~s~~~---s~~~ret~Tm~~~~~sswy~~r~~d~~~~~--~~~~~~e~~~y  523 (814)
T COG0495         477 IESLPD---STAYRETDTMDTFIDSSWYYLRFFDPIFLG--ELPFDREEFNY  523 (814)
T ss_pred             EEecCC---CceeeehhhhhHhcccccccHhhcChhcCc--cchhcHHHHhc
Confidence            888886   368999999999999999999999999884  24577777666

>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=4.6e-15  Score=150.96  Aligned_cols=91  Identities=25%  Similarity=0.395  Sum_probs=62.3

Q ss_pred             HHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccc------cCCCCCCCCCceecCCcccc
Q psy8378         125 IAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQH------CSCPKCGHGGARRETDTMDT  197 (230)
Q Consensus       125 I~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~------~~~~~~g~~~~~retDtmD~  197 (230)
                      ..+|+| |||+||+|||||+|++|+++.+..++|.... ....+..|.+.||..      ..|+.||+ .|+|++|||||
T Consensus       454 r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~-~~~~~~~g~~~w~~~~idel~~~~~~~g~-~~~rv~DvlDV  531 (933)
T COG0060         454 RPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELV-GQLVEEKGIDDWHRPDIDELLPPCPEDGK-EYRRVPDVLDV  531 (933)
T ss_pred             CCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHH-HHHhhhcCchhhhccchHhhcCCCCCCcc-eeEecCcceEE
Confidence            457888 8999999999999999888776333332100 011225577778853      22446775 89999999999


Q ss_pred             ccccchhhhhhcCCCCCCCC
Q psy8378         198 FVDSAWYYVRYLGSGGDPNV  217 (230)
Q Consensus       198 WfdSgw~~~ry~~p~~~~~~  217 (230)
                      |||||.++..-..|+++..+
T Consensus       532 WFDSGs~~~a~~~~~~~~~~  551 (933)
T COG0060         532 WFDSGSTPYAVLHPRENLKF  551 (933)
T ss_pred             EEcCCCCcccccCCcccccC
Confidence            99999555544447665443

>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed

Probab=99.47  E-value=8.1e-15  Score=150.18  Aligned_cols=81  Identities=23%  Similarity=0.286  Sum_probs=56.8

Q ss_pred             HHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCccccccc---CCCCCCCCCceecCCccccccc
Q psy8378         125 IAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHC---SCPKCGHGGARRETDTMDTFVD  200 (230)
Q Consensus       125 I~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~---~~~~~g~~~~~retDtmD~Wfd  200 (230)
                      +.+|++ |||+||+|||+|||++|+++.++++ ++..+++ .....|.+.||...   .+|.|+ ..++|++||||||||
T Consensus       451 ~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~-~~~~i~~-~~~~~g~~~W~~~~~~~~~~~~~-~~~~~~~DvlDvWfd  527 (912)
T PRK05743        451 RPDWCISRQRTWGVPIPIFYHKETGELHPTPE-LIEHVAK-LFEKEGIDAWFELDAKELLPDEA-DEYEKETDILDVWFD  527 (912)
T ss_pred             CcCccccccceeCceEEEEEECCCCcEeecHH-HHHHHHH-HHHhhCCccccccCHHHhcCCcc-cCEEECCchhhhhhh
Confidence            378888 8999999999999999988776443 3221111 01123677787532   145455 479999999999999


Q ss_pred             cc--hhhhhh
Q psy8378         201 SA--WYYVRY  208 (230)
Q Consensus       201 Sg--w~~~ry  208 (230)
                      ||  |++++.
T Consensus       528 Sg~s~~~~~~  537 (912)
T PRK05743        528 SGSSHAAVLE  537 (912)
T ss_pred             hCCCHHHHhc
Confidence            98  776665

>PRK13208 valS valyl-tRNA synthetase; Reviewed

Probab=99.43  E-value=1.2e-13  Score=139.62  Aligned_cols=79  Identities=35%  Similarity=0.704  Sum_probs=54.7

Q ss_pred             HHHh-hcccCCCccceEecCCCCcccCCC-CCCCCCCCCCCCCCCCCcccccccCCCCCCCCCceecCCccccccccchh
Q psy8378         127 VWFL-KCRYWGTPIPMVHCPSCGPVPVPY-EALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSAWY  204 (230)
Q Consensus       127 ~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~-~~Lp~~lp~~~~~p~g~~~~w~~~~~~~~g~~~~~retDtmD~WfdSgw~  204 (230)
                      +|++ |||+||.|||+|+|++||...+++ +.+|+.       |+.+...  ...|+.||...++|++||||+||||||.
T Consensus       397 DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l~~~-------~~~d~~~--~~~~~~~g~~~~~~~~dvlD~WfdS~~~  467 (800)
T PRK13208        397 DWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPVD-------PTKDEPP--GYKCPQCGSPGFEGETDVMDTWATSSIT  467 (800)
T ss_pred             CceeeeccccCCcceEEEeCCCCCeecCchhhhccC-------chhhccc--cccccccCCcCEEecCCEEEEEEeCCch
Confidence            8888 899999999999999998876653 334332       2222111  1347777755799999999999999964


Q ss_pred             hhhhc-CCCCC
Q psy8378         205 YVRYL-GSGGD  214 (230)
Q Consensus       205 ~~ry~-~p~~~  214 (230)
                      +.... .|.+.
T Consensus       468 ~~~~~~~~~~~  478 (800)
T PRK13208        468 PLIVTGWERDE  478 (800)
T ss_pred             HHHHhCCCCCh
Confidence            44333 35543

>PTZ00419 valyl-tRNA synthetase-like protein; Provisional

Probab=99.32  E-value=3.5e-13  Score=139.21  Aligned_cols=96  Identities=19%  Similarity=0.286  Sum_probs=57.0

Q ss_pred             HHHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCceecCCccccccccc
Q psy8378         124 VIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSA  202 (230)
Q Consensus       124 vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~~~~~g~~~~~retDtmD~WfdSg  202 (230)
                      .+.+|++ |||+||.|||+|||++|+....++...+..+......+......+  ..++.|| ..++|++||||||||||
T Consensus       441 ~l~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~DVlDtWFdS~  517 (995)
T PTZ00419        441 NIQDWCISRQLWWGHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKK--FGLSEED-FELEQDEDVLDTWFSSG  517 (995)
T ss_pred             ccccceeeeecccCceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccc--cCCcccc-CCeEECCceEEEEEeCC
Confidence            4779988 899999999999999987543322222221110000011110001  1133344 36999999999999999


Q ss_pred             hhhhhh-cCCCCCCCC--CCCCC
Q psy8378         203 WYYVRY-LGSGGDPNV--RLPDQ  222 (230)
Q Consensus       203 w~~~ry-~~p~~~~~~--~~~~~  222 (230)
                      +++... .+|++++.+  .+|+|
T Consensus       518 l~p~~~~g~p~~~~~~~~~~P~d  540 (995)
T PTZ00419        518 LFPFSTLGWPDQTDDLQRFFPTS  540 (995)
T ss_pred             HHHHHHhCCCCChHHHhhcCCCc
Confidence            665544 568765443  34554

>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=3.4e-13  Score=136.39  Aligned_cols=77  Identities=29%  Similarity=0.594  Sum_probs=59.2

Q ss_pred             HHHHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCceecCCcccccccc
Q psy8378         123 HVIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDS  201 (230)
Q Consensus       123 ~vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~~~~~g~~~~~retDtmD~WfdS  201 (230)
                      ..|.+|++ |||+||.|||+|||++||+..+.++ +|....             ....|+.   ..+++++|||||||+|
T Consensus       394 ~~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~-~~~~~~-------------~~~~~~~---~~~~qd~DVLDTWFSS  456 (877)
T COG0525         394 ENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEE-EPEDPA-------------AAEKCPK---EELEQDEDVLDTWFSS  456 (877)
T ss_pred             hhCcCceeeeeeecCcccceEEecCCCcEEeCCc-cccchh-------------hhccCch---hcccCCcchhhhhhhc
Confidence            45779999 8999999999999999898887665 433211             0122332   3589999999999999


Q ss_pred             c-hhhhhhcCCCCCCC
Q psy8378         202 A-WYYVRYLGSGGDPN  216 (230)
Q Consensus       202 g-w~~~ry~~p~~~~~  216 (230)
                      | |.+....+|..++.
T Consensus       457 ~LwPfstlgWp~~t~~  472 (877)
T COG0525         457 SLWPFSTLGWPEETPD  472 (877)
T ss_pred             ccccccccCCCCcchH
Confidence            9 99999999986444

>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed

Probab=99.29  E-value=5.8e-13  Score=137.41  Aligned_cols=94  Identities=30%  Similarity=0.582  Sum_probs=61.0

Q ss_pred             HHHHHHh-hcccCCCccceEecCCCCcccCCC--CCCCCC-----CCCCCCCCCCCcccccccCCCCCCCCCceecCCcc
Q psy8378         124 VIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPY--EALPIT-----LPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTM  195 (230)
Q Consensus       124 vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~--~~Lp~~-----lp~~~~~p~g~~~~w~~~~~~~~g~~~~~retDtm  195 (230)
                      .+.+|++ |||+||+|||+|+|++|++..+..  ++|...     .+.+.+.|+.+.   ....|+. | ..++|++|||
T Consensus       442 ~l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~---~~~~~~~-~-~~~~r~~dVl  516 (975)
T PRK06039        442 NARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVDE---VTLPCPD-G-GTMRRVPDVI  516 (975)
T ss_pred             cCccceeeeccccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhccccccc---ccccCCC-C-cceEeccccc
Confidence            4779988 899999999999999988655533  222100     011112222211   1234653 4 4799999999


Q ss_pred             ccccccc-hhhhhhcCCCCCCC---CCCCCC
Q psy8378         196 DTFVDSA-WYYVRYLGSGGDPN---VRLPDQ  222 (230)
Q Consensus       196 D~WfdSg-w~~~ry~~p~~~~~---~~~~~~  222 (230)
                      ||||||| |++..+..|.++..   ..+|+|
T Consensus       517 DvWFdSg~~p~a~~~~p~~~~~~f~~~~Pad  547 (975)
T PRK06039        517 DVWFDSGSMPYAQLHYPFENKEWFEKHFPAD  547 (975)
T ss_pred             cceeecCCccHHHhCCcccChhhhhccCCce
Confidence            9999999 78888888875432   235554

>PTZ00427 isoleucine-tRNA ligase, putative; Provisional

Probab=99.28  E-value=9.3e-13  Score=138.07  Aligned_cols=95  Identities=21%  Similarity=0.291  Sum_probs=58.6

Q ss_pred             HHHHHHh-hcccCCCccceEecCCCCcccCCCC--CCCCCCCC-----CCCCCCCCcccccccCCCCCC-CCCceecCCc
Q psy8378         124 VIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYE--ALPITLPP-----SPPLPLASNAEWQHCSCPKCG-HGGARRETDT  194 (230)
Q Consensus       124 vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~--~Lp~~lp~-----~~~~p~g~~~~w~~~~~~~~g-~~~~~retDt  194 (230)
                      .+.+|++ |||+||+|||||+|++|+...+.++  +|.. +++     +.+.++.+...   ..||..+ ...++|++||
T Consensus       567 n~~DWcISRqR~WGtPIPvW~~~~~~~~~~i~s~~el~~-~~~~~~~~dlh~~~iD~~~---~~~~~g~~~~~~~r~~DV  642 (1205)
T PTZ00427        567 DAKDWCISRNRYWGTPIPIWADEKMETVICVESIKHLEE-LSGVKNINDLHRHFIDHIE---IKNPKGKTYPKLKRIPEV  642 (1205)
T ss_pred             cCccceeeeccccCccceeEEcCCCCeEeccCCHHHHHH-HhccccchhhcccccChhh---ccCCccccccceeecCce
Confidence            3668888 8999999999999998876554431  2211 111     12222222211   1244211 1259999999


Q ss_pred             cccccccc-hhhhhhcCCCC--CCC--CCCCCC
Q psy8378         195 MDTFVDSA-WYYVRYLGSGG--DPN--VRLPDQ  222 (230)
Q Consensus       195 mD~WfdSg-w~~~ry~~p~~--~~~--~~~~~~  222 (230)
                      |||||||| |.|+....|.+  .+.  ..+|+|
T Consensus       643 lD~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD  675 (1205)
T PTZ00427        643 FDCWFESGSMPYAKVHYPFSTEKEDFHKIFPAD  675 (1205)
T ss_pred             EEEEEeCCCChHHHhCCCcccchhhHhccCCce
Confidence            99999999 77777777863  333  235654

>PLN02882 aminoacyl-tRNA ligase

Probab=99.27  E-value=1.2e-12  Score=136.96  Aligned_cols=86  Identities=24%  Similarity=0.370  Sum_probs=54.5

Q ss_pred             HHHHHHHh-hcccCCCccceEecCCCCcccCCC--CCCCCCCCCCCCCCCCCcccc---cccCCC-CCCC--CCceecCC
Q psy8378         123 HVIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPY--EALPITLPPSPPLPLASNAEW---QHCSCP-KCGH--GGARRETD  193 (230)
Q Consensus       123 ~vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~--~~Lp~~lp~~~~~p~g~~~~w---~~~~~~-~~g~--~~~~retD  193 (230)
                      ..+.+|++ |||+||+|||+|+|++|+...+.+  ++|. .+.+.    .+.+.|+   ....+| .+|.  ..++|++|
T Consensus       462 ~~~~DW~ISRqR~WGtPIPvw~~~~~~~~~~~~s~~el~-~~~~~----~~~dlh~~~id~i~~p~~~~~~~~~~~r~~d  536 (1159)
T PLN02882        462 ENARDWAVSRSRFWGTPLPIWISDDGEEVVVIGSIAELE-KLSGV----KVTDLHRHFIDHITIPSSRGPEFGVLRRVDD  536 (1159)
T ss_pred             hcCcccceeeccccCCccceEEeCCCCeEEecCcHHHHH-HHhCC----chhhccccchhhhccccccCCchhceEecCc
Confidence            34678888 899999999999999876544332  2221 11110    0112222   112223 2231  36999999


Q ss_pred             ccccccccc-hhhhhhcCCCC
Q psy8378         194 TMDTFVDSA-WYYVRYLGSGG  213 (230)
Q Consensus       194 tmD~WfdSg-w~~~ry~~p~~  213 (230)
                      ||||||||| |.|+....|.+
T Consensus       537 VlD~WFdSg~~p~a~~~~p~e  557 (1159)
T PLN02882        537 VFDCWFESGSMPYAYIHYPFE  557 (1159)
T ss_pred             eeeeeeccCccHHHHcCCccc
Confidence            999999999 77777788864

>PRK14900 valS valyl-tRNA synthetase; Provisional

Probab=99.26  E-value=1.1e-12  Score=136.15  Aligned_cols=71  Identities=28%  Similarity=0.601  Sum_probs=55.1

Q ss_pred             HHHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCceecCCccccccccc
Q psy8378         124 VIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSA  202 (230)
Q Consensus       124 vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~~~~~g~~~~~retDtmD~WfdSg  202 (230)
                      .+.+|++ |||+||.|||+|||+++ .+.++.+ .                   ...||.||+..++|++||||||||||
T Consensus       412 ~l~DW~ISRqr~WG~PIP~w~~~~~-~~~v~~~-~-------------------~~~~~~~~~~~~~~~~dVlDvWFdS~  470 (1052)
T PRK14900        412 NIHDWCISRQLWWGHQIPAWYCPDG-HVTVARE-T-------------------PEACSTCGKAELRQDEDVLDTWFSSG  470 (1052)
T ss_pred             cCccceEEeecCCCceeCeEEcCCC-cEEeccc-c-------------------cccccccCccceecCCceEEEEEcCC
Confidence            3678888 89999999999999874 3333221 0                   12467777667999999999999999


Q ss_pred             -hhhhhhcCCCCCC
Q psy8378         203 -WYYVRYLGSGGDP  215 (230)
Q Consensus       203 -w~~~ry~~p~~~~  215 (230)
                       ||+.++.+|++++
T Consensus       471 l~y~s~~g~p~~~~  484 (1052)
T PRK14900        471 LWPFSTMGWPEQTD  484 (1052)
T ss_pred             hHHHHHHcCCCchH
Confidence             9999999887654

>KOG0433|consensus

Probab=99.24  E-value=2.9e-13  Score=133.76  Aligned_cols=82  Identities=23%  Similarity=0.299  Sum_probs=58.4

Q ss_pred             HHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccC---CC-----C--CCCCCceecCC
Q psy8378         125 IAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCS---CP-----K--CGHGGARRETD  193 (230)
Q Consensus       125 I~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~---~~-----~--~g~~~~~retD  193 (230)
                      -..||| |||.||.|||++|.++++.+.++.+.+.+..  ...+..|.|.||....   .|     .  .-+.+|.|.||
T Consensus       466 R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~--~~~eqeGsD~Ww~~~~eellpe~~~~e~~~~a~ey~kgtD  543 (937)
T KOG0433|consen  466 RPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAK--LTREQEGSDVWWEIDVEELLPEEEVREIPDIASEYKKGTD  543 (937)
T ss_pred             CCcceeeeccccCCcceeEEecCCCceeehHHHHHHHH--HHHHHhCCcceEeCChhHhCcHhhhcccchhHHHhccCCc
Confidence            457999 8999999999999999888887765443211  0112558899996321   11     1  12247999999


Q ss_pred             ccccccccc--hhhhhh
Q psy8378         194 TMDTFVDSA--WYYVRY  208 (230)
Q Consensus       194 tmD~WfdSg--w~~~ry  208 (230)
                      |||+|||||  |.+++-
T Consensus       544 imDVWFDSGssWs~v~~  560 (937)
T KOG0433|consen  544 IMDVWFDSGSSWSAVLD  560 (937)
T ss_pred             eeeeEecCCCcceeecC
Confidence            999999999  766543

>PLN02381 valyl-tRNA synthetase

Probab=99.23  E-value=2.3e-12  Score=134.00  Aligned_cols=86  Identities=17%  Similarity=0.255  Sum_probs=50.7

Q ss_pred             HHHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccc--------cCCCCC-CCC-CceecC
Q psy8378         124 VIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQH--------CSCPKC-GHG-GARRET  192 (230)
Q Consensus       124 vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~--------~~~~~~-g~~-~~~ret  192 (230)
                      .+.+|++ |||+||+|||+|||+.++.      .+..    .+.   ..+.|+..        ..++.| |+. .++|++
T Consensus       511 n~~DWcISRQr~WG~pIPiw~~~~~~~------~~~~----~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~  577 (1066)
T PLN02381        511 NIRDWCISRQLWWGHRIPAWYVTLEDD------QLKE----LGS---YNDHWVVARNESDALLEASQKFPGKKFELSQDP  577 (1066)
T ss_pred             cCccceeeeecccCCccceEEeccChh------hccc----CCc---ccceEEEccchHhhcchhhcccCCCccceeecC
Confidence            5778988 8999999999999861111      1100    000   00112211        112122 322 499999


Q ss_pred             Cccccccccchhhhhhc-CCCCCCCC--CCCCC
Q psy8378         193 DTMDTFVDSAWYYVRYL-GSGGDPNV--RLPDQ  222 (230)
Q Consensus       193 DtmD~WfdSgw~~~ry~-~p~~~~~~--~~~~~  222 (230)
                      |||||||||||++.+++ +|.+.+.+  .+|+|
T Consensus       578 DVlDtWF~Sg~~p~~~lg~P~~~~~~~~~~P~d  610 (1066)
T PLN02381        578 DVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTS  610 (1066)
T ss_pred             ceeeEEEeCCchHHHHhcCCCCHHHHhccCCCe
Confidence            99999999996666665 57654433  35654

>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional

Probab=99.23  E-value=1.2e-12  Score=135.01  Aligned_cols=73  Identities=21%  Similarity=0.323  Sum_probs=45.8

Q ss_pred             HHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccC---CCC--CCCCCceecCCccccccc
Q psy8378         127 VWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCS---CPK--CGHGGARRETDTMDTFVD  200 (230)
Q Consensus       127 ~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~---~~~--~g~~~~~retDtmD~Wfd  200 (230)
                      +|++ |||+||+|||+|||+++ +..++.+.+....  +.....|.+.||....   ++.  +++..++|++||||||||
T Consensus       489 DWcISRQR~WG~PIP~~~~~~~-~~~~~~~~~~~~~--~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDvWFd  565 (961)
T PRK13804        489 DWVISRQRAWGVPIPIFVAEDG-EILMDEEVNARIA--DAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFD  565 (961)
T ss_pred             cceeeeeccCCceeeEEEcCCC-CEeccHHHHHHHH--HHHHhcCCccccccCHHHhcCcccCcccceEecCcceeeeec
Confidence            7888 89999999999999764 4433332211100  0011235667774211   221  123479999999999999


Q ss_pred             cc
Q psy8378         201 SA  202 (230)
Q Consensus       201 Sg  202 (230)
                      ||
T Consensus       566 Sg  567 (961)
T PRK13804        566 SG  567 (961)
T ss_pred             CC
Confidence            98

>TIGR00392 ileS isoleucyl-tRNA synthetase

Probab=99.20  E-value=3.6e-12  Score=129.88  Aligned_cols=84  Identities=24%  Similarity=0.325  Sum_probs=50.2

Q ss_pred             HHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccc----------cccCCCCCCCCCceecCC
Q psy8378         125 IAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEW----------QHCSCPKCGHGGARRETD  193 (230)
Q Consensus       125 I~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w----------~~~~~~~~g~~~~~retD  193 (230)
                      +.+|++ |||+||+|||+|+|++|+... +...... +.+ .....|.+.||          ....|+.|  ..++|++|
T Consensus       460 l~DW~ISRqr~WG~pIP~~~~~~~~~~~-~~~~~~~-~~~-~~~~~g~~~w~~~~~~~~~~~~~~~~~~~--~~~~r~~d  534 (861)
T TIGR00392       460 RPDWCISRQRYWGIPIPIWYCEDTGEPI-VVGSIEE-LIE-LIELKGIDAWFEDLHRDFLDKITLKSGDG--GEYRRVPD  534 (861)
T ss_pred             CCcceeeccccCCCeeeEEEECCCCCCc-CchhHHH-HHH-HHHHhCCccccccchhhhcCchhccCCCC--cceEEccc
Confidence            568888 899999999999999988652 1111100 000 00011222222          22345544  36999999


Q ss_pred             ccccccccc-hhhhhhcCCCC
Q psy8378         194 TMDTFVDSA-WYYVRYLGSGG  213 (230)
Q Consensus       194 tmD~WfdSg-w~~~ry~~p~~  213 (230)
                      ||||||||| |++.....|.+
T Consensus       535 vlDvWfdS~~~~~~~~~~~~~  555 (861)
T TIGR00392       535 VLDVWFDSGSMPYASIHYPFE  555 (861)
T ss_pred             cccchhhcCcchHHhcCCCCC
Confidence            999999998 44333335544

The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.

>PLN02843 isoleucyl-tRNA synthetase

Probab=99.19  E-value=2.4e-12  Score=132.84  Aligned_cols=76  Identities=26%  Similarity=0.374  Sum_probs=50.3

Q ss_pred             HHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccC---CC---CCCCCCceecCCcccc
Q psy8378         125 IAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCS---CP---KCGHGGARRETDTMDT  197 (230)
Q Consensus       125 I~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~---~~---~~g~~~~~retDtmD~  197 (230)
                      +.+|++ |||+||+|||+|||++|++..+..+.+....  +.....|.+.||....   .|   .++...|+|++|||||
T Consensus       466 ~~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~i~~~~--~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDv  543 (974)
T PLN02843        466 RSDWCISRQRTWGVPIPVFYHVETKEPLMNEETIAHVK--SIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDV  543 (974)
T ss_pred             CcceeeeeccccccEEEEEEEcCCCCEeechhhHHHHH--HHHHhhCCcccccCCHHHhCcccccCchhhhEeccccccc
Confidence            567888 8999999999999999887655443332110  0011236677885211   12   1222469999999999


Q ss_pred             ccccc
Q psy8378         198 FVDSA  202 (230)
Q Consensus       198 WfdSg  202 (230)
                      |||||
T Consensus       544 WFdSg  548 (974)
T PLN02843        544 WFDSG  548 (974)
T ss_pred             chhcC
Confidence            99999

>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6

Probab=99.16  E-value=2.5e-13  Score=133.65  Aligned_cols=87  Identities=31%  Similarity=0.547  Sum_probs=53.1

Q ss_pred             HHHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccc---cCCCCCCCCCceecCCcccccc
Q psy8378         124 VIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQH---CSCPKCGHGGARRETDTMDTFV  199 (230)
Q Consensus       124 vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~---~~~~~~g~~~~~retDtmD~Wf  199 (230)
                      .+.+|++ |||+||+|||+|+|++|+...++++.++....  .....+.+.||..   ..++.++ ..++|++||||+||
T Consensus       413 ~l~DWcISRQR~WG~PIPiw~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dvlD~Wf  489 (601)
T PF00133_consen  413 NLRDWCISRQRYWGTPIPIWYCEDCGEVLVIESTIELIAD--RVEKEGIDAWLHKPAEDKLPCCG-GELRRDTDVLDTWF  489 (601)
T ss_dssp             T--EEE-EESSSSSEBETEEEETTSEEEECCGGHHHHHHH--HSTHHHHSCTSSHHHHHHHTTTS-SEEEEHS-EE-HHH
T ss_pred             ccccchhhccCCCCccceeeecccCccccccccccccccc--ccccccccccccccccccccccc-cceEEeeeeccccc
Confidence            3567766 89999999999999999887776543332100  0012233344421   1234455 57999999999999


Q ss_pred             ccchhhh-hhcCCCC
Q psy8378         200 DSAWYYV-RYLGSGG  213 (230)
Q Consensus       200 dSgw~~~-ry~~p~~  213 (230)
                      |||+++. ....|++
T Consensus       490 dSg~~~~~~~~~~~~  504 (601)
T PF00133_consen  490 DSGLWPFAVLGWPEN  504 (601)
T ss_dssp             HHCTCHHHHTTSTTC
T ss_pred             cccCCcccccccccc
Confidence            9995544 5555766

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....

>TIGR00422 valS valyl-tRNA synthetase

Probab=99.12  E-value=1.8e-11  Score=124.91  Aligned_cols=74  Identities=26%  Similarity=0.443  Sum_probs=52.4

Q ss_pred             HHHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCC-CCceecCCcccccccc
Q psy8378         124 VIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGH-GGARRETDTMDTFVDS  201 (230)
Q Consensus       124 vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~~~~~g~-~~~~retDtmD~WfdS  201 (230)
                      .+.+|++ |||+||.|||+|||++|+.+.+..++.....+.                  .+|. ..++|++|||||||||
T Consensus       395 ~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~~~~~~~~------------------~~~~~~~~~~~~dVlDtWFdS  456 (861)
T TIGR00422       395 NIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPLPDDKT------------------NTGPSVELEQDTDVLDTWFSS  456 (861)
T ss_pred             ccccceeeeecccCCcceEEEECCCCcEEeccchHHhhhhh------------------ccCCcccEEECCCcccceecc
Confidence            3678888 899999999999999888766544322111110                  1121 3699999999999999


Q ss_pred             c-hhhhhhcCCCCCC
Q psy8378         202 A-WYYVRYLGSGGDP  215 (230)
Q Consensus       202 g-w~~~ry~~p~~~~  215 (230)
                      | ||+.....|.+++
T Consensus       457 ~l~~~s~~g~p~~~~  471 (861)
T TIGR00422       457 SLWPFSTLGWPDETK  471 (861)
T ss_pred             chHHHHHhCCCCChH
Confidence            9 6766666776543

The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.

>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases

Probab=99.09  E-value=3.5e-11  Score=112.50  Aligned_cols=78  Identities=24%  Similarity=0.493  Sum_probs=52.8

Q ss_pred             HHHHHh-hcccCCCccceEecCCCCcccCCCCC-CCCCCCCCCCCCCCCcccccccCCCCCCCCCceecCCccccccccc
Q psy8378         125 IAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEA-LPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSA  202 (230)
Q Consensus       125 I~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~-Lp~~lp~~~~~p~g~~~~w~~~~~~~~g~~~~~retDtmD~WfdSg  202 (230)
                      +.+|++ |+|.||.|||+|+|++|+...+..+. ++....        .     ...+..||+..++|++||||||||||
T Consensus       209 l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~v~dvWfds~  275 (382)
T cd00817         209 IRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKA--------A-----PEACVPCGGEELKQDEDVLDTWFSSS  275 (382)
T ss_pred             CccceeeeccccCCccceEEeCCCCcEEecchhHHHHHHh--------c-----cccccCCCccCeeECCceeeeeecCC
Confidence            446666 88999999999999998876655432 221110        0     11223456668999999999999999


Q ss_pred             -hhhhhhcCCCCCC
Q psy8378         203 -WYYVRYLGSGGDP  215 (230)
Q Consensus       203 -w~~~ry~~p~~~~  215 (230)
                       +|+.....|.+++
T Consensus       276 ~~~~~~~~~~~~~~  289 (382)
T cd00817         276 LWPFSTLGWPEETK  289 (382)
T ss_pred             CcHHHHhCCCCcch
Confidence             5555555565543

Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>PLN02943 aminoacyl-tRNA ligase

Probab=99.04  E-value=2.5e-11  Score=125.24  Aligned_cols=74  Identities=23%  Similarity=0.363  Sum_probs=49.9

Q ss_pred             HHHHHHh-hcccCCCccceEec--CCCCc-ccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCC-CceecCCccccc
Q psy8378         124 VIAVWFL-KCRYWGTPIPMVHC--PSCGP-VPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHG-GARRETDTMDTF  198 (230)
Q Consensus       124 vI~~Wfl-r~R~wg~pIPi~~~--~~~~~-~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~~~~~g~~-~~~retDtmD~W  198 (230)
                      .+.+|++ |||+||.|||+|||  ++|+. ..+..+.-+                +....++.||.. .++|++||||||
T Consensus       447 ~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~----------------~~~~~~~~~g~~~~~~~~~DVlDtW  510 (958)
T PLN02943        447 NIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEE----------------ALEKAREKYGKDVEIYQDPDVLDTW  510 (958)
T ss_pred             cCccceEEEecCCCCccCceeccccCCCceEEecCcHHH----------------HHHHhhhhcCCchheeecCceEEEE
Confidence            4677888 89999999999997  45653 222211110                000112334422 588999999999


Q ss_pred             cccc-hhhhhhcCCCC
Q psy8378         199 VDSA-WYYVRYLGSGG  213 (230)
Q Consensus       199 fdSg-w~~~ry~~p~~  213 (230)
                      |||| ||+..+.+|..
T Consensus       511 FdS~l~p~s~lgwp~~  526 (958)
T PLN02943        511 FSSALWPFSTLGWPDV  526 (958)
T ss_pred             EcCccchHHhcCCCcc
Confidence            9999 99999888763

>PRK05729 valS valyl-tRNA synthetase; Reviewed

Probab=98.99  E-value=1.7e-10  Score=118.08  Aligned_cols=69  Identities=25%  Similarity=0.409  Sum_probs=49.4

Q ss_pred             HHHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCceecCCccccccccc
Q psy8378         124 VIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSA  202 (230)
Q Consensus       124 vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~~~~~g~~~~~retDtmD~WfdSg  202 (230)
                      .+.+|++ |||+||.|||+|||++ +...+..++     |+               .+   ....++|++||||||||||
T Consensus       397 ~l~DWcISRq~~WG~pIP~~~~~~-~~~~v~~~~-----~~---------------~~---~~~~~~~~~DvlDtWfsS~  452 (874)
T PRK05729        397 NIQDWCISRQLWWGHRIPAWYDED-GEVYVGREE-----PE---------------AR---EKALLTQDEDVLDTWFSSA  452 (874)
T ss_pred             cCccceeeeecccCCcccEEEeCC-CcEEeCCcc-----cc---------------cc---cccCeEeCCceecceecCC
Confidence            3678888 8999999999999987 333332211     10               01   1124899999999999999


Q ss_pred             -hhhhhhcCCCCCCC
Q psy8378         203 -WYYVRYLGSGGDPN  216 (230)
Q Consensus       203 -w~~~ry~~p~~~~~  216 (230)
                       |++....+|++++.
T Consensus       453 l~~~~~lgwp~~~~~  467 (874)
T PRK05729        453 LWPFSTLGWPEKTED  467 (874)
T ss_pred             ccHHHHhCCCCCcHH
Confidence             99888888865543

>KOG0434|consensus

Probab=98.92  E-value=1.6e-10  Score=114.17  Aligned_cols=99  Identities=22%  Similarity=0.371  Sum_probs=63.9

Q ss_pred             CCCCCccHHHHHHHHHHHHh-hcccCCCccceEecCCCCcccCCC--CCCCCCCCCCCCCCCCCcccccccCCC-CCCCC
Q psy8378         111 FKYNHYTVSLAHHVIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPY--EALPITLPPSPPLPLASNAEWQHCSCP-KCGHG  186 (230)
Q Consensus       111 ~~l~~~~~~lA~~vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~--~~Lp~~lp~~~~~p~g~~~~w~~~~~~-~~g~~  186 (230)
                      .+|.+|...     ..+|-+ |.|+||+|||+|+.+|+.++.+.+  ++|. +|.+.....+.++. -.+.+.| ++|.+
T Consensus       444 KRF~NWL~n-----ARDW~iSRnR~WGTPIpLWVSdD~eevVcigSi~eLE-eLSG~kItDlHRe~-iD~itIps~~gkg  516 (1070)
T KOG0434|consen  444 KRFANWLKN-----ARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKELE-ELSGVKITDLHRES-IDHITIPSKKGKG  516 (1070)
T ss_pred             HHHHHHHhh-----hhhcccccccccCCCcceEEccCCceEEEeccHHHHH-HhcCCcchhhhhhh-cCceecccCCCCc
Confidence            466677654     679988 779999999999999988776655  2332 12211111111110 0123344 45667


Q ss_pred             CceecCCccccccccchh-hhhhcCCCCCCC
Q psy8378         187 GARRETDTMDTFVDSAWY-YVRYLGSGGDPN  216 (230)
Q Consensus       187 ~~~retDtmD~WfdSgw~-~~ry~~p~~~~~  216 (230)
                      .++|.++|+||||+||.+ |+.-+.|..+.+
T Consensus       517 ~l~Rv~eVfDCWFESGSMPYAq~HyPFenk~  547 (1070)
T KOG0434|consen  517 VLHRVSEVFDCWFESGSMPYAQRHYPFENKE  547 (1070)
T ss_pred             ceehhhhHhhhhhccCCCcchhhcCCccchH
Confidence            899999999999999954 455567876655

>KOG0432|consensus

Probab=98.28  E-value=6.7e-08  Score=97.75  Aligned_cols=74  Identities=18%  Similarity=0.331  Sum_probs=49.5

Q ss_pred             HHHHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccc------------cCC-CCCCCCCc
Q psy8378         123 HVIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQH------------CSC-PKCGHGGA  188 (230)
Q Consensus       123 ~vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~------------~~~-~~~g~~~~  188 (230)
                      ..|.+||+ ||-+||..||+|+-...+.  -++                 ..-|..            .++ | +.+-.+
T Consensus       452 ~~i~DWCiSRQLWWGHrIPAy~v~~~~~--~~e-----------------e~~WvvarseeeA~ekaa~k~g~-~~~~~L  511 (995)
T KOG0432|consen  452 ENIRDWCISRQLWWGHRIPAYFVNLSDG--RAE-----------------EDYWVVARSEEEAREKAAEKFGP-GKEFTL  511 (995)
T ss_pred             hhccccchhhhhhhccccceeeeecccC--CCc-----------------cceeEEeCCHHHHHHHHHHHhCC-ccccee
Confidence            56889998 8999999999998422111  000                 011110            001 1 011367


Q ss_pred             eecCCccccccccc-hhhhhhcCCCCCCC
Q psy8378         189 RRETDTMDTFVDSA-WYYVRYLGSGGDPN  216 (230)
Q Consensus       189 ~retDtmD~WfdSg-w~~~ry~~p~~~~~  216 (230)
                      +|+.|||||||.|| |.|..+.+|+.++.
T Consensus       512 ~qDpDVLDTWFSS~L~PfS~lGWP~~t~d  540 (995)
T KOG0432|consen  512 EQDPDVLDTWFSSGLWPFSTLGWPEETKD  540 (995)
T ss_pred             ecCccHHHhhhhcccccchhcCCcccccc
Confidence            99999999999999 99999999985554

>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases

Probab=98.14  E-value=8.5e-07  Score=81.86  Aligned_cols=52  Identities=40%  Similarity=0.779  Sum_probs=38.0

Q ss_pred             HHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCceecCCccccccccc-
Q psy8378         125 IAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSA-  202 (230)
Q Consensus       125 I~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~~~~~g~~~~~retDtmD~WfdSg-  202 (230)
                      +.+|++ |+|.||.|+|+|+|++++.+.+                                    .++.+||||||||| 
T Consensus       189 l~dw~iSR~~~WGip~P~~~~~~~~~~~~------------------------------------~~~~~v~~vWfda~~  232 (338)
T cd00818         189 RRDWCISRQRYWGTPIPVWYCEDCGEVLV------------------------------------RRVPDVLDVWFDSGS  232 (338)
T ss_pred             chhcceeeecccCceeeEEEecCCCeEEE------------------------------------ecCCceEEEEEeCCC
Confidence            567877 8999999999999877543221                                    46889999999998 


Q ss_pred             hhhhhhcCCC
Q psy8378         203 WYYVRYLGSG  212 (230)
Q Consensus       203 w~~~ry~~p~  212 (230)
                      +++..-..|.
T Consensus       233 ~~~~~~~~~~  242 (338)
T cd00818         233 MPYAQLHYPF  242 (338)
T ss_pred             CHHHHcCCCC
Confidence            5444333343

Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>KOG3687|consensus

Probab=97.62  E-value=1.1e-05  Score=82.97  Aligned_cols=128  Identities=11%  Similarity=0.029  Sum_probs=105.2

Q ss_pred             cccchhhhHHHHHHHHHhhccccccCccchhhHHHHHHHHHH-hhhHHHHHhhHHHHHHHhhccccchhhhhHHHHHHH-
Q psy8378           4 KHWMLGLLRYLGKCYNAAVTTESERGYSRQEKCITALTTCTL-EMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSM-   81 (230)
Q Consensus         4 ~~~~~~~q~~iv~~~~~gl~~~~~~~~~~~~~Ci~aLtic~~-E~p~s~~k~l~~il~~ls~i~t~~~mAvpilEFl~~-   81 (230)
                      +.++++++|+.+..+..|.+.|.    -....-++.+.+||+ +.|.++-+.||+++...|++.+.+...+++++|+-. 
T Consensus      1020 ~q~sr~~Ed~~~S~sfgGh~~r~----~a~~v~as~~~Ls~~~~~P~~~~~aLpe~a~TgSrv~~~P~~~~~~~~plC~~ 1095 (1697)
T KOG3687|consen 1020 QQVSRGAEDRVRSMSFGGHGLRV----GALDVPASQFLLSATSPGPRTAPAALPEKASTGSRVPVQPKTNLAAYVPLCTQ 1095 (1697)
T ss_pred             chhcccchhheeeeccCCcchhh----ccccCcHHHHHHhhcCCCchhhhhhcchhhcccceeecCCCCcceEeeehhcc
Confidence            37899999999999999999886    235666889999999 999999999999999999999999999999999877 


Q ss_pred             ---hcCC--C------------------ccccCcchhhhhhhhcccccCCCCC-------------------CCCCc-cH
Q psy8378          82 ---LTRL--P------------------KLFSNFVGDQYMSVFAICMPCTNPF-------------------KYNHY-TV  118 (230)
Q Consensus        82 ---l~~l--p------------------~l~~nf~~~~y~~vfgi~~~~in~~-------------------~l~~~-~~  118 (230)
                         ...+  |                  ++++||...+|..+||++.+|+++.                   -...+ .+
T Consensus      1096 gwae~lvrrPtgn~sw~~~~~np~~pf~~~i~nF~~~~~~~~F~~a~~~~~hrdt~~~~~~s~~aEs~ak~~p~~rs~~v 1175 (1697)
T KOG3687|consen 1096 GWAEILVRRPTGNTSWLMSLENPLSPFSSDINNFPLQELSNAFMAAERFKEHRDTALYKSLSVPAESTAKPPPLPRSNTV 1175 (1697)
T ss_pred             chHHheeeCCCCCchhhhhccCCCCcchhhHhcCCHHHHhhhhhhhhhhhcCccccccCCCCCchhhhcCCCCCchhHHH
Confidence               3333  3                  3668999999999999999999741                   23334 67


Q ss_pred             HHHHHHHHH-----------HHhhcccC
Q psy8378         119 SLAHHVIAV-----------WFLKCRYW  135 (230)
Q Consensus       119 ~lA~~vI~~-----------Wflr~R~w  135 (230)
                      +.|+.....           |+.+.+.-
T Consensus      1176 A~A~sl~q~s~~g~~~~~~~w~~S~~~~ 1203 (1697)
T KOG3687|consen 1176 ASASSLYQSSCQGQLHRSVSWADSAVVM 1203 (1697)
T ss_pred             HHHHHHHHHHhccccccccccccceeec
Confidence            778877776           88865443

>PLN02959 aminoacyl-tRNA ligase

Probab=97.35  E-value=2e-05  Score=82.94  Aligned_cols=17  Identities=6%  Similarity=-0.097  Sum_probs=14.1

Q ss_pred             cCCccccccccc-hhhhh
Q psy8378         191 ETDTMDTFVDSA-WYYVR  207 (230)
Q Consensus       191 etDtmD~WfdSg-w~~~r  207 (230)
                      +.||||+||+|| |.+..
T Consensus       635 ~~dV~D~wF~Sg~~p~~t  652 (1084)
T PLN02959        635 TDEVWDFVFCGGPLPKSS  652 (1084)
T ss_pred             CccceeEeecCCCccccc
Confidence            689999999999 66544

>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A

Probab=96.45  E-value=0.0017  Score=55.73  Aligned_cols=89  Identities=17%  Similarity=0.185  Sum_probs=54.8

Q ss_pred             cCccchhhHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccccchhhhhH-----HHHHHHhcCCC--ccccCcc-------
Q psy8378          28 RGYSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTSIAIPI-----LEFVSMLTRLP--KLFSNFV-------   93 (230)
Q Consensus        28 ~~~~~~~~Ci~aLtic~~E~p~s~~k~l~~il~~ls~i~t~~~mAvpi-----lEFl~~l~~lp--~l~~nf~-------   93 (230)
                      .|..|...++|-+|  =-++|.-|.-+.      |..-+||++|+||.     +||++.. +||  +++.+-.       
T Consensus        81 ~Gv~tg~~aihP~t--~~~iPI~va~yV------l~~yGtgAVmgvPahD~rD~~FAk~~-~lpi~~Vi~~~~~~~~~~~  151 (185)
T PF13603_consen   81 EGVFTGLYAIHPLT--GKKIPIYVANYV------LMDYGTGAVMGVPAHDERDFEFAKKY-NLPIKQVIKPKDDNEEIDN  151 (185)
T ss_dssp             -EEEEEEEEE-TTT--S-EEEEEEETTS-------TTSTTSEEEE-CCC-HHHHHHHHHH-T------EEBSSSS---ST
T ss_pred             ccCcCCCEEECCCC--CCCccEEEECce------eecCCcceEEEcCCCCHHHHHHHHHc-CCCeeEEEcCCCCcccccc
Confidence            34456667777665  455565554443      23459999999999     9999999 799  5553221       


Q ss_pred             -hhhhhhhhcccccCCCCCCCCCccHHHHHHHHHHHH
Q psy8378          94 -GDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWF  129 (230)
Q Consensus        94 -~~~y~~vfgi~~~~in~~~l~~~~~~lA~~vI~~Wf  129 (230)
                       .+.|.. -|   ..+||+.|+|+...+|..+|..|.
T Consensus       152 ~~~~~~~-~G---~l~nS~~f~Gl~~~eA~~~I~~~L  184 (185)
T PF13603_consen  152 KQEAYTG-DG---ILINSGEFNGLSSKEAREKIIKKL  184 (185)
T ss_dssp             TSS---S------EE-SSGGGTTSBHHHHHHHHHHHH
T ss_pred             cccCcCC-CE---EEEeCCCCCCCCHHHHHHHHHHHh
Confidence             123433 67   567999999999999999999885

...

>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases

Probab=95.67  E-value=0.0034  Score=56.96  Aligned_cols=19  Identities=32%  Similarity=0.398  Sum_probs=15.3

Q ss_pred             CCccccccccchhhhhhcC
Q psy8378         192 TDTMDTFVDSAWYYVRYLG  210 (230)
Q Consensus       192 tDtmD~WfdSgw~~~ry~~  210 (230)
                      .+++||||||+.+|+.+..
T Consensus       195 ~~~i~~Wfds~~~~~~~~~  213 (312)
T cd00668         195 EDVFDVWFDSGIGPLGSLG  213 (312)
T ss_pred             cccccchhhccHHHHHHcC
Confidence            6899999999977776654

Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.

>PRK12300 leuS leucyl-tRNA synthetase; Reviewed

Probab=95.51  E-value=0.0066  Score=63.07  Aligned_cols=22  Identities=23%  Similarity=0.123  Sum_probs=17.7

Q ss_pred             HHHHHh-hcccCCCccce---EecCC
Q psy8378         125 IAVWFL-KCRYWGTPIPM---VHCPS  146 (230)
Q Consensus       125 I~~Wfl-r~R~wg~pIPi---~~~~~  146 (230)
                      +.+|++ |||+||+|||+   |.++.
T Consensus       437 l~DW~ISRqr~WGtpiP~~~~w~~es  462 (897)
T PRK12300        437 LKDRACARRRGLGTRLPWDEEWIIES  462 (897)
T ss_pred             hhhcceeeccccCCcCCccCCEEeee
Confidence            678877 89999999995   66554

>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases

Probab=91.12  E-value=0.092  Score=47.96  Aligned_cols=21  Identities=52%  Similarity=1.072  Sum_probs=17.4

Q ss_pred             CCccccccccchhhhhhcCCC
Q psy8378         192 TDTMDTFVDSAWYYVRYLGSG  212 (230)
Q Consensus       192 tDtmD~WfdSgw~~~ry~~p~  212 (230)
                      .++++|||||.||++.|+...
T Consensus       182 ~~~i~~w~ds~~y~~~y~~~~  202 (314)
T cd00812         182 TDTMESLSDSTWYYARYTDAH  202 (314)
T ss_pred             ccccccccccHHHHHHHHhcc
Confidence            568999999999999887543

Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>PRK12267 methionyl-tRNA synthetase; Reviewed

Probab=89.92  E-value=0.08  Score=53.04  Aligned_cols=18  Identities=17%  Similarity=0.390  Sum_probs=13.6

Q ss_pred             CCccccccccchhhhhhc
Q psy8378         192 TDTMDTFVDSAWYYVRYL  209 (230)
Q Consensus       192 tDtmD~WfdSgw~~~ry~  209 (230)
                      ..|++|||||+..|+...
T Consensus       222 ~~v~yVWfDA~~~y~s~~  239 (648)
T PRK12267        222 KHVVYVWIDALLNYITAL  239 (648)
T ss_pred             CCEEEEcccchHHHHHHc
Confidence            469999999996555443

>PRK11893 methionyl-tRNA synthetase; Reviewed

Probab=82.86  E-value=0.4  Score=46.17  Aligned_cols=17  Identities=12%  Similarity=0.214  Sum_probs=12.7

Q ss_pred             CCccccccccchhhhhh
Q psy8378         192 TDTMDTFVDSAWYYVRY  208 (230)
Q Consensus       192 tDtmD~WfdSgw~~~ry  208 (230)
                      ..+++|||||++.|...
T Consensus       219 ~~~~~vWfda~~~y~s~  235 (511)
T PRK11893        219 KHVIYVWFDALTNYLTA  235 (511)
T ss_pred             CceEEEEecCcHHHHhH
Confidence            46888999999666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	230
2v0c_A	878	Leucyl-Trna Synthetase From Thermus Thermophilus Co		4e-20
1obh_A	878	Leucyl-Trna Synthetase From Thermus Thermophilus Co		4e-20
4aq7_A	880	Ternary Complex Of E. Coli Leucyl-Trna Synthetase,		1e-06

>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Sulphamoyl Analogue Of Leucyl-Adenylate In The Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3- Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The Editing Site Length = 878

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/108 (46%), Positives = 62/108 (57%), Gaps = 16/108 (14%)
Query: 128 WFL-KCRYWGTPIPMVHCPSCGPVPVPYEAXXXXXXXXX---------XXXXASNAEWQH 177
           W + + RYWGTPIPMVHC +CG VPVP E                        ++ E+  
Sbjct: 422 WLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYE 481
Query: 178 CSCPKCGHGGARRETDTMDTFVDSAWYYVRYLGSGGDP-NVRLPDQPD 224
            +CPKCG G A+R+TDTMDTF DS+WYY+RY     DP N RLP  P+
Sbjct: 482 TTCPKCG-GPAKRDTDTMDTFFDSSWYYLRYT----DPHNDRLPFDPE 524

>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Pre-Transfer Editing Substrate Analogue In Both Synthetic Active Site And Editing Site Length = 878

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/108 (46%), Positives = 62/108 (57%), Gaps = 16/108 (14%)
Query: 128 WFL-KCRYWGTPIPMVHCPSCGPVPVPYEAXXXXXXXXX---------XXXXASNAEWQH 177
           W + + RYWGTPIPMVHC +CG VPVP E                        ++ E+  
Sbjct: 422 WLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYE 481
Query: 178 CSCPKCGHGGARRETDTMDTFVDSAWYYVRYLGSGGDP-NVRLPDQPD 224
            +CPKCG G A+R+TDTMDTF DS+WYY+RY     DP N RLP  P+
Sbjct: 482 TTCPKCG-GPAKRDTDTMDTFFDSSWYYLRYT----DPHNDRLPFDPE 524

>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase, Trna(Leu) And Leucyl-Adenylate Analogue In The Aminoacylation Conformation Length = 880

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 131 KCRYWGTPIPMVHCPSCGPVPVPYEAX-----XXXXXXXXXXXXASNAEWQHCSCPKCGH 185
           + RYWG PIPMV       +P P +                    ++ EW   +      
Sbjct: 444 RQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVNGMP- 502
Query: 186 GGARRETDTMDTFVDSAWYYVRY 208
             A RETDT DTF++S+WYY RY
Sbjct: 503 --ALRETDTFDTFMESSWYYARY 523

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	230
2v0c_A	878	Aminoacyl-tRNA synthetase; ligase, nucleotide-bind	3e-42
4arc_A	880	Leucine--tRNA ligase; ligase-RNA complex, nucleoti	6e-40
1wkb_A	810	Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e	2e-04

>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878

 Score =  151 bits (384), Expect = 3e-42
 Identities = 50/93 (53%), Positives = 62/93 (66%), Gaps = 14/93 (15%)

Query: 133 RYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPL---------PLASNAEWQHCSCPKC 183
           RYWGTPIPMVHC +CG VPVP E LP+ LP    +         PL ++ E+   +CPKC
Sbjct: 428 RYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKC 487

Query: 184 GHGGARRETDTMDTFVDSAWYYVRYLGSGGDPN 216
           G G A+R+TDTMDTF DS+WYY+RY     DP+
Sbjct: 488 G-GPAKRDTDTMDTFFDSSWYYLRYT----DPH 515

>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880

 Score =  145 bits (367), Expect = 6e-40
 Identities = 34/89 (38%), Positives = 44/89 (49%), Gaps = 12/89 (13%)

Query: 133 RYWGTPIPMVHCPSCGPVPVPYEALPITLP----PSPPL-PLASNAEWQHCSCPKCGHGG 187
           RYWG PIPMV       +P P + LP+ LP          P+ ++ EW   +        
Sbjct: 446 RYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVNG---MP 502

Query: 188 ARRETDTMDTFVDSAWYYVRYLGSGGDPN 216
           A RETDT DTF++S+WYY RY      P 
Sbjct: 503 ALRETDTFDTFMESSWYYARYT----CPQ 527

>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 9/83 (10%), Positives = 22/83 (26%), Gaps = 10/83 (12%)

Query: 131 KCRYWGTPIPM-----VHCPSCGPVPVPYEALPITLPPSPP----LPLASNAEWQHCSCP 181
           +    GTP+P      +   S   + + Y  +   +          P     E+      
Sbjct: 510 RKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFL 569

Query: 182 KCGHGGARRETDTMDTFVDSAWY 204
           +      + +     T + +   
Sbjct: 570 EEF-SEDKEKELEKKTGIPAEII 591

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	230
4arc_A	880	Leucine--tRNA ligase; ligase-RNA complex, nucleoti	99.94
2v0c_A	878	Aminoacyl-tRNA synthetase; ligase, nucleotide-bind	99.92
1gax_A	862	Valrs, valyl-tRNA synthetase; protein-RNA complex,	99.47
1ffy_A	917	Isoleucyl-tRNA synthetase; protein-RNA complex, me	99.43
1ile_A	821	Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s	99.42
2ajg_A	196	Leucyl-tRNA synthetase; editing domain, ligase; 2.	92.81
2x1l_A	524	Methionyl-tRNA synthetase; nucleotide-binding, pro	89.65
3o0a_A	219	Leucyl-tRNA synthetase subunit alpha; CP1 hydrolyt	87.33
1wny_A	186	Isoleucyl-tRNA synthetase; ligase, structural geno	85.37
1wka_A	147	Valyl-tRNA synthetase; editing, CP1, fidelity, the	80.94

>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*

Probab=99.94  E-value=2.9e-28  Score=246.02  Aligned_cols=154  Identities=30%  Similarity=0.506  Sum_probs=124.2

Q ss_pred             hccccchhhhhH-----HHHHHHhcCCC--ccccC-------cchhhhhhhhcccccCCCCCCCCCccHHHHHHHHHHH-
Q psy8378          64 KISITTSIAIPI-----LEFVSMLTRLP--KLFSN-------FVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVW-  128 (230)
Q Consensus        64 ~i~t~~~mAvpi-----lEFl~~l~~lp--~l~~n-------f~~~~y~~vfgi~~~~in~~~l~~~~~~lA~~vI~~W-  128 (230)
                      .-|||++|++|+     +||++.. +||  .++..       .+.+.|.. .|   ..+|++.|+|+.+.+|...|..| 
T Consensus       349 ~~GTGaV~~~Pahd~~D~~~~~~~-~Lpi~~vi~~~~~~~~~~~~~~~~~-~g---~~~ns~~~~Gl~~~eA~~~ii~~L  423 (880)
T 4arc_A          349 EYGTGAVMAVPGHDQRDYEFASKY-GLNIKPVILAADGSEPDLSQQALTE-KG---VLFNSGEFNGLDHEAAFNAIADKL  423 (880)
T ss_dssp             SSTTSEEEECTTTCHHHHHHHHHH-TCCCCCCBCCTTSCCCCCSSSCCCS-CC---CBCSSGGGTTCCHHHHHHHHHHHH
T ss_pred             CCCCceEEEccCCCHHHHHHHHHc-CCCceEeeccCcccccccccccccC-Cc---eeecCcccCCCCHHHHHHHHHHHH
Confidence            348999999999     9999999 899  44432       11223332 45   35689999999999999988866 


Q ss_pred             -----------------Hh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCC-----CCCCCCCcccccccCCCCCCC
Q psy8378         129 -----------------FL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPS-----PPLPLASNAEWQHCSCPKCGH  185 (230)
Q Consensus       129 -----------------fl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~-----~~~p~g~~~~w~~~~~~~~g~  185 (230)
                                       ++ ||||||+|||||||++||.+.+++++||+.||++     .++|+..+..|....||  | 
T Consensus       424 ~~~g~~~~~v~yrlrDW~iSRQRyWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w~~~~cp--g-  500 (880)
T 4arc_A          424 TAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVN--G-  500 (880)
T ss_dssp             HHTTSEEEEEEESCCCEECEESCSSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTTTEEESS--S-
T ss_pred             HHcCCcceeEEEEcccceeeeeeccCCcceEEEECCCCeEeCChHHCccccchhcccCCCCCchHhCccceeeccC--C-
Confidence                             33 7999999999999999999999999999988863     23677777788777788  5 


Q ss_pred             CCceecCCccccccccchhhhhhcCCCCCCCCCCCCCcccccc
Q psy8378         186 GGARRETDTMDTFVDSAWYYVRYLGSGGDPNVRLPDQPDGSRY  228 (230)
Q Consensus       186 ~~~~retDtmD~WfdSgw~~~ry~~p~~~~~~~~~~~~~~~~y  228 (230)
                      ..++||||||||||||||||+||++|+|++..   ++++..+|
T Consensus       501 ~~~~retDtmDtw~dSswy~~r~~~p~~~~~~---~~~~~~~~  540 (880)
T 4arc_A          501 MPALRETDTFDTFMESSWYYARYTCPQYKEGM---LDSEAANY  540 (880)
T ss_dssp             SEEEECCCEECTTTGGGTHHHHTTSTTCCSSS---CCHHHHHH
T ss_pred             CcceeCCCcCCCcccCcHHHHhhcCCCccccc---cChHHHhc
Confidence            47999999999999999999999999988765   66654443

>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*

Probab=99.92  E-value=2.8e-26  Score=231.57  Aligned_cols=153  Identities=39%  Similarity=0.758  Sum_probs=121.8

Q ss_pred             ccccchhhhhH-----HHHHHHhcCCC--ccccC--cc-----hhhhhhhhcccccCCCCCCCCCccHHHHHHHHHHH--
Q psy8378          65 ISITTSIAIPI-----LEFVSMLTRLP--KLFSN--FV-----GDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVW--  128 (230)
Q Consensus        65 i~t~~~mAvpi-----lEFl~~l~~lp--~l~~n--f~-----~~~y~~vfgi~~~~in~~~l~~~~~~lA~~vI~~W--  128 (230)
                      -|||++|++|+     +||++.. +||  .++..  -.     .+.|.. .|   ..+|++.|+|+.+.+|...|..|  
T Consensus       332 ~GTG~V~~~PaHd~~D~~~~~k~-~L~i~~vi~~~~~~~~~~~~~~~~~-~g---~~~ns~~~~Gl~~~eA~~~Ii~~L~  406 (878)
T 2v0c_A          332 YGTGAIMAVPAHDQRDYEFARKF-GLPIKKVIERPGEPLPEPLERAYEE-PG---IMVNSGPFDGTESEEGKRKVIAWLE  406 (878)
T ss_dssp             STTSEEEECTTTCHHHHHHHHHH-TCCCCCCEECSSSCCCSSCSSCCCS-CC---EECSSGGGTTCBHHHHHHHHHHHHH
T ss_pred             CCCceEEeCCCCCHHHHHHHHHc-CCCceeeeCCCCccccccccccccC-Ce---eEecCCCCCCcCHHHHHHHHHHHHH
Confidence            48999999999     9999999 888  44431  00     122321 34   44688899999999999888765  


Q ss_pred             ----------------Hh-hcccCCCccceEecCCCCcccCCCCCCCCCCCC---------CCCCCCCCcccccccCCCC
Q psy8378         129 ----------------FL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPP---------SPPLPLASNAEWQHCSCPK  182 (230)
Q Consensus       129 ----------------fl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~---------~~~~p~g~~~~w~~~~~~~  182 (230)
                                      ++ |||+||+|||+|||++|+.+.+++++||+.||+         .+.+|+.....|....||+
T Consensus       407 ~~g~~~~~v~~rlrDW~ISRQR~WG~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~~~~~~~~~cp~  486 (878)
T 2v0c_A          407 EKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPK  486 (878)
T ss_dssp             HHTSEEEEEEESCCCEECEESCSSSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEEECTT
T ss_pred             HCCCCCCceEEecccchhhcccccCCcccEEEECCCCeEecCHHHccccccchhhhhccccCCCChhhhhHhhcCCcCCC
Confidence                            44 899999999999999999999999999988773         1456777777787778999


Q ss_pred             CCCCCceecCCccccccccchhhhhhcCCCCCCCCCCCCCcccc
Q psy8378         183 CGHGGARRETDTMDTFVDSAWYYVRYLGSGGDPNVRLPDQPDGS  226 (230)
Q Consensus       183 ~g~~~~~retDtmD~WfdSgw~~~ry~~p~~~~~~~~~~~~~~~  226 (230)
                      ||+ .++||+|||||||||||||+||++|+|++..   ++++..
T Consensus       487 cg~-~~~retDtmDtwfdSsw~~~~~~~p~~~~~~---~~~~~~  526 (878)
T 2v0c_A          487 CGG-PAKRDTDTMDTFFDSSWYYLRYTDPHNDRLP---FDPEKA  526 (878)
T ss_dssp             TCS-EEEECCCEECHHHHHTSHHHHTTSTTCSSSS---CCHHHH
T ss_pred             CCC-cceeccccccccccccchhhhccCccccccc---cCHHHH
Confidence            985 7999999999999999999999999987654   555433

>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A

Probab=99.47  E-value=2.7e-14  Score=144.14  Aligned_cols=77  Identities=27%  Similarity=0.568  Sum_probs=58.4

Q ss_pred             HHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCceecCCccccccccc-
Q psy8378         125 IAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSA-  202 (230)
Q Consensus       125 I~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~~~~~g~~~~~retDtmD~WfdSg-  202 (230)
                      +.+|++ |||+||.|||+|||++|+.+.+...++   +..       .+     ..|+.||+..++|++|||||||||| 
T Consensus       397 l~DW~ISRqr~WG~pIP~w~~~~~~~i~v~~~~~---l~~-------~~-----~~~~~~g~~~~~r~~DvlDtWfdS~~  461 (862)
T 1gax_A          397 VKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPER---YLE-------DP-----TSCEACGSPRLKRDEDVFDTWFSSAL  461 (862)
T ss_dssp             CCCCCCBCCCSSSCCCCCEEETTTCCEECCCGGG---TTC-------CC-----CSCTTTCCSCEEECCCCBCHHHHHTS
T ss_pred             ccceeEecccCCCcccCceecCCCCEEEEecccc---ccc-------cc-----hhhhhcCchheecCCcccceeeccCC
Confidence            446777 899999999999999988766644222   111       00     1467788668999999999999999 


Q ss_pred             hhhhhhcCCCCCCC
Q psy8378         203 WYYVRYLGSGGDPN  216 (230)
Q Consensus       203 w~~~ry~~p~~~~~  216 (230)
                      |+|.++.+|+|++.
T Consensus       462 ~~~~~~~~p~~~~~  475 (862)
T 1gax_A          462 WPLSTLGWPEETED  475 (862)
T ss_dssp             CTTGGGTTTSCCHH
T ss_pred             cchhhccCCCchHH
Confidence            99999999976543

>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*

Probab=99.43  E-value=1.3e-15  Score=154.45  Aligned_cols=90  Identities=24%  Similarity=0.432  Sum_probs=57.3

Q ss_pred             HHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCccccc---------ccCCCCCCCCCceecCCcc
Q psy8378         126 AVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQ---------HCSCPKCGHGGARRETDTM  195 (230)
Q Consensus       126 ~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~---------~~~~~~~g~~~~~retDtm  195 (230)
                      .+|++ |||+||+|||+|||++ +...++++ +...+++ .....|.+.||.         ...||+||+..++|++|||
T Consensus       449 ~DW~ISRqr~WG~PIP~~~~~~-g~~~~~~~-~~~~i~~-~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~D~l  525 (917)
T 1ffy_A          449 GEWVISRQRVWGVPLPVFYAEN-GEIIMTKE-TVNHVAD-LFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIM  525 (917)
T ss_dssp             CCEECEESCSSSCBCCCEECTT-SCEECCHH-HHHHHHH-HHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEE
T ss_pred             ccceeeccCCcCcccceeeCCC-CCEecCHH-HHHHHHH-HhhhcCCcccccCCHHHhcccccccccCCcccccccCCCc
Confidence            36766 8999999999999988 55555443 2111111 001124444542         1358889866899999999


Q ss_pred             ccccccc--hhhhhhcCCCCCCCCCCCCC
Q psy8378         196 DTFVDSA--WYYVRYLGSGGDPNVRLPDQ  222 (230)
Q Consensus       196 D~WfdSg--w~~~ry~~p~~~~~~~~~~~  222 (230)
                      |||||||  |+++.  +.  ++++.+|+|
T Consensus       526 D~WfdSg~~~~~~l--~~--~~~~~~P~D  550 (917)
T 1ffy_A          526 DVWFDSGSSHRGVL--ET--RPELSFPAD  550 (917)
T ss_dssp             CHHHHHHTHHHHTT--TT--STTCCSSBS
T ss_pred             CeecCCCCCHHHHc--CC--chhcCCCce
Confidence            9999998  55552  21  123446766

>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*

Probab=99.42  E-value=2.5e-14  Score=143.30  Aligned_cols=88  Identities=27%  Similarity=0.551  Sum_probs=55.3

Q ss_pred             HHHHHHh-hcccCCCccceEecCCCCcccCCC--CCC---CCCCCCCCCCCCC-CcccccccCCCCCCCCCceecCCccc
Q psy8378         124 VIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPY--EAL---PITLPPSPPLPLA-SNAEWQHCSCPKCGHGGARRETDTMD  196 (230)
Q Consensus       124 vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~--~~L---p~~lp~~~~~p~g-~~~~w~~~~~~~~g~~~~~retDtmD  196 (230)
                      .+.+|++ |||+||.|||+|+|++|+...+.+  ++|   ....+. +...+. ...+|....|| || ..++|++||||
T Consensus       440 ~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~-~~~~l~~~~~d~~~~~~~-~g-~~~~r~~dvld  516 (821)
T 1ile_A          440 NLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLP-EPFDPHRPYVDQVELACA-CG-GTMRRVPYVID  516 (821)
T ss_dssp             TCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCC-SSCCCSHHHHTTCEEECT-TS-SEEEECSCBCC
T ss_pred             CCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHHHhhcccccc-chhhhccccccccccCCC-CC-Cchhhcccccc
Confidence            3568877 899999999999999988755543  122   111100 000111 01122334587 88 47999999999


Q ss_pred             cccccchh-hhhhcCCCCC
Q psy8378         197 TFVDSAWY-YVRYLGSGGD  214 (230)
Q Consensus       197 ~WfdSgw~-~~ry~~p~~~  214 (230)
                      |||||||+ +.....|.++
T Consensus       517 ~WfdS~~~~~~~~~~p~~~  535 (821)
T 1ile_A          517 VWYDSGAMPFASLHYPFEH  535 (821)
T ss_dssp             HHHHHHHHHHHTTTTTTSC
T ss_pred             eecccccchHhhcCCCccc
Confidence            99999954 4555567543

>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A

Probab=92.81  E-value=0.091  Score=43.80  Aligned_cols=64  Identities=17%  Similarity=0.135  Sum_probs=47.7

Q ss_pred             hccccchhhhhH-----HHHHHHhcCCC--cccc-------CcchhhhhhhhcccccCCCCCCCCCccHHHHHHHHHHHH
Q psy8378          64 KISITTSIAIPI-----LEFVSMLTRLP--KLFS-------NFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWF  129 (230)
Q Consensus        64 ~i~t~~~mAvpi-----lEFl~~l~~lp--~l~~-------nf~~~~y~~vfgi~~~~in~~~l~~~~~~lA~~vI~~Wf  129 (230)
                      .-|||++|++|.     ++|++.. +||  .++.       +..+.-|.. .|   ..+|++.|+|+.+..|...|..++
T Consensus       112 ~~GTG~V~~aPah~~~D~~~~~k~-~L~i~~vI~~~~g~~~d~~~g~y~~-~g---~~~ns~~~~Gl~v~eA~~~Ii~~L  186 (196)
T 2ajg_A          112 EYGTGAVMAVPGHDQRDYEFASKY-GLNIKPVILAADGSEPDLSQQALTE-KG---VLFNSGEFNGLDHEAAFNAIADKL  186 (196)
T ss_dssp             SSSCSEEEECTTTCHHHHHHHHHH-TCCCCCCBCCTTSSCCCCSSSCCCS-CC---CBCSSGGGTTCCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCHHHHHHHHHc-CCCceeEEeCCcCcccccccccccC-Cc---eEecCcccCCeEHHHHHHHHHHHH
Confidence            348999999999     9999998 788  4553       211222332 33   456888999999999999999998


Q ss_pred             hhc
Q psy8378         130 LKC  132 (230)
Q Consensus       130 lr~  132 (230)
                      ..+
T Consensus       187 ~~~  189 (196)
T 2ajg_A          187 TAM  189 (196)
T ss_dssp             HHT
T ss_pred             HHC
Confidence            754

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*

Probab=89.65  E-value=0.02  Score=53.93  Aligned_cols=20  Identities=20%  Similarity=0.187  Sum_probs=13.8

Q ss_pred             Cccccccccchhhhhhc-CCC
Q psy8378         193 DTMDTFVDSAWYYVRYL-GSG  212 (230)
Q Consensus       193 DtmD~WfdSgw~~~ry~-~p~  212 (230)
                      +||||||||+|.|+... .|.
T Consensus       234 ~~~yvWfds~~~~~~~~g~p~  254 (524)
T 2x1l_A          234 HVMYVWVDALTNYLTGVGFPD  254 (524)
T ss_dssp             EEECHHHHHHTHHHHTTTTTC
T ss_pred             CEEEEecCCchHHHHHcCCCC
Confidence            47899999997765433 354

>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A

Probab=87.33  E-value=0.39  Score=40.85  Aligned_cols=64  Identities=16%  Similarity=0.271  Sum_probs=47.0

Q ss_pred             hccccchhhhhH-----HHHHHHhcCCC--ccccC---cc--hhhhhhhhcccccCCCCCCCCCccHHHHHHHHHHHHhh
Q psy8378          64 KISITTSIAIPI-----LEFVSMLTRLP--KLFSN---FV--GDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLK  131 (230)
Q Consensus        64 ~i~t~~~mAvpi-----lEFl~~l~~lp--~l~~n---f~--~~~y~~vfgi~~~~in~~~l~~~~~~lA~~vI~~Wflr  131 (230)
                      .-|||++|++|.     ++|++.. +||  .++.+   ..  +..|.. .|   .++|++.|+|+.+..|...|..++..
T Consensus       133 ~~GTGaV~~aPaHd~~D~~~~~k~-~Lpi~~vi~~~~~~~~~~g~ft~-~g---~~~~~~~~~Gl~~~eA~~~Ii~~L~~  207 (219)
T 3o0a_A          133 EYGTGAIMCVPAHDQRDWEFAKKY-DLPIKVVVKPEGAWDFEKGAYEG-KG---TLVNSDGFDGLDSETAKRKITEWLQD  207 (219)
T ss_dssp             TSTTSEEEECTTTCHHHHHHHHHH-TCCCCCCEECSSCCCTTTCCCCS-CC---EECSCGGGTTCBHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEECCCCCHHHHHHHHHc-CCCceeeeCCccccccccccccc-cc---eEecCCCCCCCCHHHHHHHHHHHHHH
Confidence            348999999999     9999998 888  44432   10  122221 34   45678899999999999999999875


Q ss_pred             c
Q psy8378         132 C  132 (230)
Q Consensus       132 ~  132 (230)
                      +
T Consensus       208 ~  208 (219)
T 3o0a_A          208 R  208 (219)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A

Probab=85.37  E-value=1  Score=36.97  Aligned_cols=55  Identities=15%  Similarity=0.013  Sum_probs=43.3

Q ss_pred             hccccchhhhhH-----HHHHHHhcCCC--ccccCcchhhhhhhhcccccCCCCCCCCCccHHHHHHHHHHHHhhc
Q psy8378          64 KISITTSIAIPI-----LEFVSMLTRLP--KLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLKC  132 (230)
Q Consensus        64 ~i~t~~~mAvpi-----lEFl~~l~~lp--~l~~nf~~~~y~~vfgi~~~~in~~~l~~~~~~lA~~vI~~Wflr~  132 (230)
                      .-|||++|++|.     ++|++.. +||  .++.+         .|   .|++++ |+|+.+..|-..|..++..+
T Consensus       113 ~~GTG~V~~aPahg~~D~~~~~~~-~L~i~~~id~---------~G---~~~~~~-~~Gl~v~~A~~~Ii~~L~~~  174 (186)
T 1wny_A          113 EDGTGIVHQAPAFGAEDLETARVY-GLPLLKTVDE---------EG---KLLVEP-FKGLYFREANRAILRDLRGR  174 (186)
T ss_dssp             SSSCSCEEECGGGCHHHHHHHHHH-TCCCCCCBCT---------TS---BBCSTT-CTTCBHHHHHHHHHHHHHHT
T ss_pred             CCCcccEEEcCCCCHHHHHHHHHc-CCceEeeeCC---------Cc---cCccCC-CCCcCHHHHHHHHHHHHHHC
Confidence            349999999999     9999998 787  33321         25   566556 99999999999999998754

>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*

Probab=80.94  E-value=1.7  Score=34.43  Aligned_cols=55  Identities=9%  Similarity=-0.038  Sum_probs=42.9

Q ss_pred             hccccchhhhhH-----HHHHHHhcCCC--ccccCcchhhhhhhhcccccCCCCCC----CCCccHHHHHHHHHHHHhhc
Q psy8378          64 KISITTSIAIPI-----LEFVSMLTRLP--KLFSNFVGDQYMSVFAICMPCTNPFK----YNHYTVSLAHHVIAVWFLKC  132 (230)
Q Consensus        64 ~i~t~~~mAvpi-----lEFl~~l~~lp--~l~~nf~~~~y~~vfgi~~~~in~~~----l~~~~~~lA~~vI~~Wflr~  132 (230)
                      .-|||++|++|.     ++|.+.. +||  .++.+         .|   .+ |++.    |+|+.+..|-..|..++..+
T Consensus        72 ~~GTG~V~~~Pah~~~D~~~~~~~-~L~~~~~id~---------~G---~~-~~~~~~~~~~Gl~~~~A~~~Ii~~L~~~  137 (147)
T 1wka_A           72 DFGTGALKVTPAHDPLDYEIGERH-GLKPVSVINL---------EG---RM-EGERVPEALRGLDRFEARRKAVELFREA  137 (147)
T ss_dssp             TSTTSEEEECTTTCHHHHHHHHHH-TCCCCCSBCT---------TS---BB-CSTTSCGGGTTSBHHHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEccCCCHHHHHHHHHc-CCCcceEECC---------CC---EE-cCCCcccccCCcCHHHHHHHHHHHHHHC
Confidence            348999999999     8999998 787  33322         35   34 6665    99999999999999998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	230
d1ilea3	452	c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe	4e-08
d1ivsa4	425	c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase	8e-06
d1h3na3	494	c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas	1e-05
d1ffya3	450	c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe	2e-05

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Thermus thermophilus [TaxId: 274]

 Score = 50.7 bits (120), Expect = 4e-08
 Identities = 20/100 (20%), Positives = 31/100 (31%), Gaps = 3/100 (3%)

Query: 133 RYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCS---CPKCGHGGAR 189
           RYWGTP+P+  C +CG          +    + PLP   +    +           G  R
Sbjct: 261 RYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMR 320

Query: 190 RETDTMDTFVDSAWYYVRYLGSGGDPNVRLPDQPDGSRYC 229
           R    +D + DS       L    +      +        
Sbjct: 321 RVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIA 360

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Valyl-tRNA synthetase (ValRS)
species: Thermus thermophilus [TaxId: 274]

 Score = 43.8 bits (102), Expect = 8e-06
 Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 15/84 (17%)

Query: 133 RYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRET 192
            +WG  IP  +C  C  V VP     +                   SC  CG    +R+ 
Sbjct: 253 LWWGHQIPAWYCEDCQAVNVPRPERYL---------------EDPTSCEACGSPRLKRDE 297

Query: 193 DTMDTFVDSAWYYVRYLGSGGDPN 216
           D  DT+  SA + +  LG   +  
Sbjct: 298 DVFDTWFSSALWPLSTLGWPEETE 321

>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Leucyl-tRNA synthetase (LeuRS)
species: Thermus thermophilus [TaxId: 274]

 Score = 43.4 bits (101), Expect = 1e-05
 Identities = 49/85 (57%), Positives = 59/85 (69%), Gaps = 10/85 (11%)

Query: 133 RYWGTPIPMVHCPSCGPVPVPYEALPITLP---------PSPPLPLASNAEWQHCSCPKC 183
           RYWGTPIPMVHC +CG VPVP E LP+ LP         P    PL ++ E+   +CPKC
Sbjct: 236 RYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKC 295

Query: 184 GHGGARRETDTMDTFVDSAWYYVRY 208
           G G A+R+TDTMDTF DS+WYY+RY
Sbjct: 296 G-GPAKRDTDTMDTFFDSSWYYLRY 319

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 17/122 (13%), Positives = 36/122 (29%), Gaps = 7/122 (5%)

Query: 96  QYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPY 154
               +            +    +         W + + R WG P+P+ +  +   +    
Sbjct: 225 VRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKE 284

Query: 155 EALPITLPPSPPL------PLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSAWYYVRY 208
               +    +           A +   +  + P   +G   +ETD MD + DS   +   
Sbjct: 285 TVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGV 344

Query: 209 LG 210
           L 
Sbjct: 345 LE 346

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	230
d1ffya3	450	Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus	98.05
d1ilea3	452	Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop	96.88
d1h3na3	494	Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil	96.37
d1ivsa4	425	Valyl-tRNA synthetase (ValRS) {Thermus thermophilu	96.28
d1h3na2	192	Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil	89.28

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.05  E-value=3.8e-08  Score=89.53  Aligned_cols=85  Identities=20%  Similarity=0.260  Sum_probs=45.7

Q ss_pred             HHHHHh-hcccCCCccceEecCCCCcccCCCCCCCC-CCCC-CCC-----CCCCCcccccccCCCCCCCCCceecCCccc
Q psy8378         125 IAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPI-TLPP-SPP-----LPLASNAEWQHCSCPKCGHGGARRETDTMD  196 (230)
Q Consensus       125 I~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~-~lp~-~~~-----~p~g~~~~w~~~~~~~~g~~~~~retDtmD  196 (230)
                      +.+|++ |||+||.|||+|+|++++.+..++....+ .+.+ .+.     .+......+. ..++...+..+.+++|+||
T Consensus       254 ~~Dw~iSRqr~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~dvld  332 (450)
T d1ffya3         254 RGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEG-FTHPGSPNGTFTKETDIMD  332 (450)
T ss_dssp             CCCEECEESCSSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTT-CCCSSCTTSCCEECCCEEC
T ss_pred             ccchheeeecccccCcceeecCCCCEecchhhhHHHHHhhhhcCcccccccccccccccc-ccccCCCCCcceeeeeeec
Confidence            344555 79999999999999887654332211110 0000 000     0000000000 1122222347999999999


Q ss_pred             cccccchhhhhhcC
Q psy8378         197 TFVDSAWYYVRYLG  210 (230)
Q Consensus       197 ~WfdSgw~~~ry~~  210 (230)
                      +|||||+++.....
T Consensus       333 ~wfds~~~~~~~~~  346 (450)
T d1ffya3         333 VWFDSGSSHRGVLE  346 (450)
T ss_dssp             HHHHHHTHHHHTTT
T ss_pred             cccccccccccccc
Confidence            99999966554443

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Thermus thermophilus [TaxId: 274]

Probab=96.88  E-value=5e-05  Score=67.11  Aligned_cols=84  Identities=31%  Similarity=0.578  Sum_probs=48.2

Q ss_pred             HHHHHh-hcccCCCccceEecCCCCcccCCCCCCC----C--CCCCCCCCCCCCcccccccCCCCCCCCCceecCCcccc
Q psy8378         125 IAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALP----I--TLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDT  197 (230)
Q Consensus       125 I~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp----~--~lp~~~~~p~g~~~~w~~~~~~~~g~~~~~retDtmD~  197 (230)
                      +.+|.+ |+|.||.|+|++++++++...+......    .  ..+. +..+.....+|....+ .+. ..+.+++|++|+
T Consensus       252 l~dw~IsR~~~wg~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~-~~~~~~~~v~~~  328 (452)
T d1ilea3         252 LVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPE-PFDPHRPYVDQVELAC-ACG-GTMRRVPYVIDV  328 (452)
T ss_dssp             CCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCS-SCCCSHHHHTTCEEEC-TTS-SEEEECSCBCCH
T ss_pred             CccceeecccccccCCccccccccCcccccchhhhhhhhhccccCc-cccccccccccccccc-ccc-cccccccccccc
Confidence            345666 6899999999999988776544432111    0  1111 1111111112211112 222 358899999999


Q ss_pred             ccccchhhhhhcCC
Q psy8378         198 FVDSAWYYVRYLGS  211 (230)
Q Consensus       198 WfdSgw~~~ry~~p  211 (230)
                      |++||+.+..+...
T Consensus       329 w~~s~~~~~~~~~~  342 (452)
T d1ilea3         329 WYDSGAMPFASLHY  342 (452)
T ss_dssp             HHHHHHHHHHTTTT
T ss_pred             ccccccchhhhccC
Confidence            99999766666543

>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Leucyl-tRNA synthetase (LeuRS)
species: Thermus thermophilus [TaxId: 274]

Probab=96.37  E-value=0.00056  Score=60.70  Aligned_cols=85  Identities=58%  Similarity=1.170  Sum_probs=60.8

Q ss_pred             hcccCCCccceEecCCCCcccCCCCCCCCCCCC---------CCCCCCCCcccccccCCCCCCCCCceecCCcccccccc
Q psy8378         131 KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPP---------SPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDS  201 (230)
Q Consensus       131 r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~---------~~~~p~g~~~~w~~~~~~~~g~~~~~retDtmD~WfdS  201 (230)
                      |+|.||.++|++++.++.....+...+...+|+         .+.+|+....+|....++..+ ....++.+++++||++
T Consensus       234 r~~~~~~~i~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~-~~~~~e~~~~~~w~~~  312 (494)
T d1h3na3         234 RQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCG-GPAKRDTDTMDTFFDS  312 (494)
T ss_dssp             ESCSSSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEEECTTTC-SEEEECCCEECHHHHT
T ss_pred             cccccccceEEEeeccceeecccccchhcccccccccccCCCcCCChhHhCcceeeeecccCC-CceEEeceecccceee
Confidence            579999999999998876555444444444443         344556666666555566655 4689999999999999


Q ss_pred             chhhhhhcCCCCCCC
Q psy8378         202 AWYYVRYLGSGGDPN  216 (230)
Q Consensus       202 gw~~~ry~~p~~~~~  216 (230)
                      +|.+..+.+...+..
T Consensus       313 ~~~~~~~~~~~~~~~  327 (494)
T d1h3na3         313 SWYYLRYTDPHNDRL  327 (494)
T ss_dssp             TSHHHHTTSTTCSSS
T ss_pred             cchhhhhcccccccc
Confidence            999998887765443

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Valyl-tRNA synthetase (ValRS)
species: Thermus thermophilus [TaxId: 274]

Probab=96.28  E-value=0.00054  Score=59.82  Aligned_cols=69  Identities=30%  Similarity=0.592  Sum_probs=45.2

Q ss_pred             hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCceecCCccccccccchhhhhhcC
Q psy8378         131 KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSAWYYVRYLG  210 (230)
Q Consensus       131 r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~~~~~g~~~~~retDtmD~WfdSgw~~~ry~~  210 (230)
                      |++.||.|+|++++..++...++........               ...++.++...+.+..|++++||||++.|+...+
T Consensus       251 r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~v~~~~~da~~~~~~~~~  315 (425)
T d1ivsa4         251 RQLWWGHQIPAWYCEDCQAVNVPRPERYLED---------------PTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLG  315 (425)
T ss_dssp             ECCSSSCCCCCEEETTTCCEECCCGGGTTCC---------------CCSCTTTCCSCEEECCCEECHHHHHTSCTTTTTT
T ss_pred             cccccCCccceeeccCcceeecCcccccccc---------------ccccccccCccccccCccccccccchhHHHHhhC
Confidence            6799999999999988776555443222110               0112223334678899999999999966665544


Q ss_pred             -CCCC
Q psy8378         211 -SGGD  214 (230)
Q Consensus       211 -p~~~  214 (230)
                       |.++
T Consensus       316 ~~~~~  320 (425)
T d1ivsa4         316 WPEET  320 (425)
T ss_dssp             TTTTC
T ss_pred             CCcCh
Confidence             5443

>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: ValRS/IleRS/LeuRS editing domain
superfamily: ValRS/IleRS/LeuRS editing domain
family: ValRS/IleRS/LeuRS editing domain
domain: Leucyl-tRNA synthetase (LeuRS)
species: Thermus thermophilus [TaxId: 274]

Probab=89.28  E-value=0.13  Score=40.46  Aligned_cols=69  Identities=13%  Similarity=0.189  Sum_probs=49.0

Q ss_pred             hhccccchhhhhH-----HHHHHHhcCCC--ccc---cCcchhhhhhhhcccccCCCCCCCCCccHHHHHHHHHHHHhhc
Q psy8378          63 SKISITTSIAIPI-----LEFVSMLTRLP--KLF---SNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLKC  132 (230)
Q Consensus        63 s~i~t~~~mAvpi-----lEFl~~l~~lp--~l~---~nf~~~~y~~vfgi~~~~in~~~l~~~~~~lA~~vI~~Wflr~  132 (230)
                      ..-|||++|.+|.     ++|++.. +||  .++   .++.++.....|--.-..+|++.|+|+.+..|...|..+....
T Consensus       105 ~d~GTG~Vh~aPahg~~D~~~~~k~-~lp~~~vi~~~g~~~~~~~~~~~~~~g~~~ns~~~~Gl~v~~A~~~Ii~~L~~~  183 (192)
T d1h3na2         105 FGYGTGAIMAVPAHDQRDYEFARKF-GLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEK  183 (192)
T ss_dssp             TTSTTSEEEECTTTCHHHHHHHHHH-TCCCCCCEECSSSCCCSSCSSCCCSCCEECSSGGGTTCBHHHHHHHHHHHHHHH
T ss_pred             cccccceEEEecccCcccceeeccc-cccccccccccccccccccccccccCceEecccccCCCcHHHHHHHHHHHHHHC
Confidence            3459999999999     9999998 898  444   3444332222111111456889999999999999999988743