Psyllid ID: psy8383

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-
MSPPTGIISYYNEDAAQGDAQETYGEVSRRGGARLRGRPLSILSNGTFERLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTLQINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPITLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTEDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAAGPRLFTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEETLTCLYRIDTPCRLTCLYRIDLPNYDSYQKLYDKLSQAVEE
ccccccccccccccccccccHHHHcccccccccEEEEcccccccHHHHHHHHHHccHHHHccEEEEEEcccccccccccHHHHHHHHHHHHcccccccEEEEcccccEEEEcccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHccccccccccccccHHHHHHHHHHHHcccccccccEEEEEEEEccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccHHHHHHccccccccccccHHHHHHHHHHcccHHHHHHHccEEccccccccEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEcccccccEEEcccccccHHHHHHHHHHHHHHc
cccccccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcHHHHHHHHHcccHHHHHcEEEEEEcccccccccHHHHHHHHHHHHHHccHHHccEEEcccccccEEEcHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHcccccccccccEcEEccccccccccEEccccHHHcEcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHccccccHHHHHHcEEEEccccccHHHHHHHHHHHHccHHHHHHHHHHHHccccccEEEEEEcccccccccEEEHHHcEEEccccccHHHHHHHHHHHHHccccccEEEEcccEEHHHcEEEccccccHHHHHHHHHHHHHc
mspptgiisyynedaaqgdaqeTYGEVSrrggarlrgrplsilsngTFERLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEmlnpqyglfqysrednytlqinpdsgvnpehlsYFHFAGRIIGIAVFhghyidggfttpfykisrvtTPFYKmllnkpitlediegvdpeLHRSLTWILEntlsndvldtTFAVEVNSFGVLKvhelkgggkdiqvtedNKKEYVRLYVNWRFMRGIEQQFLALQKGFteivpihllrpfdeRELELVIGGLtsidihdwkqhtrlkhctsdtpvvKWFWQIVESYSEEMRARLLQcstgaagprlftihatdspsdnlpkahtcfnridlpnydsYQKLYDKLSQAVEETLTClyridtpcrltclyridlpnydsYQKLYDKLSQAVEE
MSPPTGIISyynedaaqgdaQETYGEVSrrggarlrgrplsilsngtferlimkmrpkeMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTLQINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPITLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLkvhelkgggkdiqvtednkkEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSIDIHDWKQHTRLkhctsdtpvVKWFWQIVESYSEEMRARLLQCSTGAAGPRLFTIHatdspsdnlpKAHTCFNRIDLPNYDSYQKLYDKLSQAVEETLTclyridtpcrLTCLYRIDLPNYDSYQKLYDKLSQAVEE
MSPPTGIISYYNEDAAQGDAQETYGEVSrrggarlrgrPLSILSNGTFERLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTLQINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPITLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTEDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAAGPRLFTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEETLTCLYRIDTPCRLTCLYRIDLPNYDSYQKLYDKLSQAVEE
***************************************LSILSNGTFERLIMKMR***MRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTLQINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPITLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTEDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAAGPRLFTIHAT******LPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEETLTCLYRIDTPCRLTCLYRIDLPNYDSYQKLYD********
***PTGIISYYNEDAAQGDAQETY**************PLSILSNGTFERLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTLQINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPITLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTEDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAAGPRLFTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEETLTCLYRIDTPCRLTCLYRIDLPNYDSYQKLYDKLSQ****
MSPPTGIISYYNEDAAQGDAQETYGEVSRRGGARLRGRPLSILSNGTFERLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTLQINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPITLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTEDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAAGPRLFTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEETLTCLYRIDTPCRLTCLYRIDLPNYDSYQKLYDKLSQAVEE
*****GIISYYNEDAAQGDAQETYGEVSRRGGARLRGRPLSILSNGTFERLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTLQINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPITLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTEDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAAGPRLFTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEETLTCLYRIDTPCRLTCLYRIDLPNYDSYQKLYDKLSQA***
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MSPPTGIISYYNEDAAQGDAQETYGEVSRRGGARLRGRPLSILSNGTFERLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTLQINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPITLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTEDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAAGPRLFTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEETLTCLYRIDTPCRLTCLYRIDLPNYDSYQKLYDKLSQAVEE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query421 2.2.26 [Sep-21-2011]
Q9V8531061 E3 ubiquitin-protein liga yes N/A 0.800 0.317 0.695 1e-148
Q9PUN2731 E3 ubiquitin-protein liga N/A N/A 0.762 0.439 0.684 1e-139
Q9CUN6731 E3 ubiquitin-protein liga yes N/A 0.762 0.439 0.676 1e-138
A9JRZ0765 E3 ubiquitin-protein liga yes N/A 0.762 0.419 0.690 1e-138
Q2TAS2751 E3 ubiquitin-protein liga N/A N/A 0.762 0.427 0.684 1e-138
Q9HCE7757 E3 ubiquitin-protein liga yes N/A 0.762 0.424 0.673 1e-138
A2A5Z6748 E3 ubiquitin-protein liga no N/A 0.762 0.429 0.684 1e-135
Q9HAU4748 E3 ubiquitin-protein liga no N/A 0.762 0.429 0.679 1e-135
Q92462767 E3 ubiquitin-protein liga yes N/A 0.757 0.415 0.504 2e-98
Q4WTF3813 Probable E3 ubiquitin-pro yes N/A 0.757 0.392 0.495 2e-95
>sp|Q9V853|SMUF1_DROME E3 ubiquitin-protein ligase Smurf1 OS=Drosophila melanogaster GN=lack PE=1 SV=3 Back     alignment and function desciption
 Score =  523 bits (1347), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 258/371 (69%), Positives = 298/371 (80%), Gaps = 34/371 (9%)

Query: 40   LSILSNGTFE---RLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQY 96
            L +  N  FE   RLIMKMR K+MRKRLMVKF+ EEGLDYGGVAREWL+LLS EMLNPQY
Sbjct: 704  LEVSRNEIFEESYRLIMKMRAKDMRKRLMVKFKGEEGLDYGGVAREWLHLLSREMLNPQY 763

Query: 97   GLFQYSREDNYTLQINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRV 156
            GLFQYSR+D+YTLQINPDSGVNP+HLSYFHF GR +GIAVFHGH +DGGFTTPFYK    
Sbjct: 764  GLFQYSRDDHYTLQINPDSGVNPDHLSYFHFVGRTLGIAVFHGHCLDGGFTTPFYK---- 819

Query: 157  TTPFYKMLLNKPITLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHE 216
                   LLNKPITL DIEGVDP+LHRSLTW+LE+ +S  ++++TF+VE NSFG L VHE
Sbjct: 820  ------QLLNKPITLGDIEGVDPDLHRSLTWMLESNISG-IIESTFSVENNSFGALVVHE 872

Query: 217  LKGGGKDIQVTEDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELE 276
            LK GG  I VTE+NK+EYV+LYVN+RFMRGIEQQFLALQKGF E++P HLLRPFDERELE
Sbjct: 873  LKPGGASIPVTEENKREYVKLYVNYRFMRGIEQQFLALQKGFCELIPSHLLRPFDERELE 932

Query: 277  LVIGGLTSIDIHDWKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARL------------ 324
            LVIGG++SID++DW+ +TRLKHCT++T  V WFWQ+VESYS EMRARL            
Sbjct: 933  LVIGGISSIDVNDWRNNTRLKHCTNETTQVLWFWQVVESYSSEMRARLLQFVTGSSRVPL 992

Query: 325  -----LQCSTGAAGPRLFTIHAT-DSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAV 378
                 LQ STGA GPRLFTIH T D P+ NLPKAHTCFNRIDLP Y++YQ L DKL+QAV
Sbjct: 993  QGFRALQGSTGAVGPRLFTIHLTADVPTQNLPKAHTCFNRIDLPPYETYQLLCDKLTQAV 1052

Query: 379  EETLTCLYRID 389
            EE  TC + ++
Sbjct: 1053 EE--TCGFAVE 1061
E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Down-regulates Dpp signaling after gastrulation by promoting MAD ubiquitination and subsequent degradation.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q9PUN2|SMUF1_XENLA E3 ubiquitin-protein ligase SMURF1 OS=Xenopus laevis GN=smurf1 PE=2 SV=1 Back     alignment and function description
>sp|Q9CUN6|SMUF1_MOUSE E3 ubiquitin-protein ligase SMURF1 OS=Mus musculus GN=Smurf1 PE=2 SV=2 Back     alignment and function description
>sp|A9JRZ0|SMUF2_DANRE E3 ubiquitin-protein ligase SMURF2 OS=Danio rerio GN=smurf2 PE=2 SV=1 Back     alignment and function description
>sp|Q2TAS2|SMUF2_XENLA E3 ubiquitin-protein ligase SMURF2 OS=Xenopus laevis GN=smurf2 PE=2 SV=1 Back     alignment and function description
>sp|Q9HCE7|SMUF1_HUMAN E3 ubiquitin-protein ligase SMURF1 OS=Homo sapiens GN=SMURF1 PE=1 SV=2 Back     alignment and function description
>sp|A2A5Z6|SMUF2_MOUSE E3 ubiquitin-protein ligase SMURF2 OS=Mus musculus GN=Smurf2 PE=1 SV=1 Back     alignment and function description
>sp|Q9HAU4|SMUF2_HUMAN E3 ubiquitin-protein ligase SMURF2 OS=Homo sapiens GN=SMURF2 PE=1 SV=1 Back     alignment and function description
>sp|Q92462|PUB1_SCHPO E3 ubiquitin-protein ligase pub1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pub1 PE=1 SV=2 Back     alignment and function description
>sp|Q4WTF3|RSP5_ASPFU Probable E3 ubiquitin-protein ligase hulA OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=hulA PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query421
328784531 905 PREDICTED: e3 ubiquitin-protein ligase S 0.800 0.372 0.765 1e-160
340720899 906 PREDICTED: e3 ubiquitin-protein ligase S 0.800 0.371 0.765 1e-159
380029635 899 PREDICTED: E3 ubiquitin-protein ligase S 0.800 0.374 0.765 1e-159
332020690 900 E3 ubiquitin-protein ligase Smurf1 [Acro 0.800 0.374 0.757 1e-159
383852529 894 PREDICTED: E3 ubiquitin-protein ligase S 0.800 0.376 0.762 1e-159
350398007 906 PREDICTED: E3 ubiquitin-protein ligase S 0.800 0.371 0.765 1e-159
383852531 907 PREDICTED: E3 ubiquitin-protein ligase S 0.800 0.371 0.762 1e-159
307202664 806 E3 ubiquitin-protein ligase Smurf1 [Harp 0.800 0.418 0.757 1e-159
380029637 846 PREDICTED: E3 ubiquitin-protein ligase S 0.800 0.398 0.769 1e-159
322793996 910 hypothetical protein SINV_00995 [Solenop 0.800 0.370 0.754 1e-158
>gi|328784531|ref|XP_396318.4| PREDICTED: e3 ubiquitin-protein ligase SMURF2 [Apis mellifera] Back     alignment and taxonomy information
 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 284/371 (76%), Positives = 310/371 (83%), Gaps = 34/371 (9%)

Query: 40  LSILSNGTFE---RLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQY 96
           L +  N  FE   RLIMKMRPK+MRKRLMVKFR EEGLDYGGVAREWLYLLSHEMLNPQY
Sbjct: 548 LEVSRNEIFEESYRLIMKMRPKDMRKRLMVKFRGEEGLDYGGVAREWLYLLSHEMLNPQY 607

Query: 97  GLFQYSREDNYTLQINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRV 156
           GLFQYSR+DNYTLQINPDSG+NPEHLSYFHFAGRIIGIAVFHGH+IDGGFTTPFYK    
Sbjct: 608 GLFQYSRDDNYTLQINPDSGINPEHLSYFHFAGRIIGIAVFHGHHIDGGFTTPFYK---- 663

Query: 157 TTPFYKMLLNKPITLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHE 216
                 MLLNK ITL DIEGVDPELHRSLTW+LEN++ + VLD TF+VE +SFGVLK HE
Sbjct: 664 ------MLLNKAITLTDIEGVDPELHRSLTWMLENSI-DGVLDATFSVEHSSFGVLKNHE 716

Query: 217 LKGGGKDIQVTEDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELE 276
           LK GGKDI VTE+NKKEYVRLYVN+RFMRGIEQQFLALQKGF E++P  LLRPFDERELE
Sbjct: 717 LKPGGKDIPVTEENKKEYVRLYVNYRFMRGIEQQFLALQKGFHELIPPQLLRPFDERELE 776

Query: 277 LVIGGLTSIDIHDWKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARL------------ 324
           LVIGGL +IDI+DWK HTRLKHCT DTPVVKWFWQIVESY EEMRARL            
Sbjct: 777 LVIGGLGTIDINDWKMHTRLKHCTPDTPVVKWFWQIVESYGEEMRARLLQFVTGSSRVPL 836

Query: 325 -----LQCSTGAAGPRLFTIHATDSPSDNLPKAHTCFNRIDLP-NYDSYQKLYDKLSQAV 378
                LQ STGAAGPRLFTIHA D+PS+NLPKAHTCFNRID+P +Y SYQK+ DKL+QAV
Sbjct: 837 QGFKALQGSTGAAGPRLFTIHAVDAPSENLPKAHTCFNRIDIPESYPSYQKMLDKLTQAV 896

Query: 379 EETLTCLYRID 389
           EE  TC + ++
Sbjct: 897 EE--TCGFAVE 905

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|340720899|ref|XP_003398866.1| PREDICTED: e3 ubiquitin-protein ligase SMURF2-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|380029635|ref|XP_003698473.1| PREDICTED: E3 ubiquitin-protein ligase SMURF2-like isoform 1 [Apis florea] Back     alignment and taxonomy information
>gi|332020690|gb|EGI61095.1| E3 ubiquitin-protein ligase Smurf1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|383852529|ref|XP_003701779.1| PREDICTED: E3 ubiquitin-protein ligase SMURF2-like isoform 1 [Megachile rotundata] Back     alignment and taxonomy information
>gi|350398007|ref|XP_003485059.1| PREDICTED: E3 ubiquitin-protein ligase SMURF2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383852531|ref|XP_003701780.1| PREDICTED: E3 ubiquitin-protein ligase SMURF2-like isoform 2 [Megachile rotundata] Back     alignment and taxonomy information
>gi|307202664|gb|EFN81984.1| E3 ubiquitin-protein ligase Smurf1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|380029637|ref|XP_003698474.1| PREDICTED: E3 ubiquitin-protein ligase SMURF2-like isoform 2 [Apis florea] Back     alignment and taxonomy information
>gi|322793996|gb|EFZ17234.1| hypothetical protein SINV_00995 [Solenopsis invicta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query421
ZFIN|ZDB-GENE-030131-1830765 smurf2 "SMAD specific E3 ubiqu 0.776 0.427 0.677 5.3e-127
UNIPROTKB|F1MLS5770 Bt.110349 "E3 ubiquitin-protei 0.776 0.424 0.666 7.8e-126
UNIPROTKB|F1NJU6737 SMURF2 "E3 ubiquitin-protein l 0.776 0.443 0.672 9.9e-126
RGD|1310067732 Smurf2 "SMAD specific E3 ubiqu 0.776 0.446 0.672 8.9e-125
UNIPROTKB|F1LX00732 Smurf2 "E3 ubiquitin-protein l 0.776 0.446 0.672 8.9e-125
MGI|MGI:1913563748 Smurf2 "SMAD specific E3 ubiqu 0.776 0.437 0.672 1.1e-124
FB|FBgn00290061061 lack "lethal with a checkpoint 0.781 0.310 0.643 1.3e-124
UNIPROTKB|F1N3W8730 SMURF2 "E3 ubiquitin-protein l 0.776 0.447 0.672 1.5e-124
UNIPROTKB|Q9HAU4748 SMURF2 "E3 ubiquitin-protein l 0.776 0.437 0.666 3e-124
UNIPROTKB|Q9PUN2731 smurf1 "E3 ubiquitin-protein l 0.755 0.435 0.623 1.1e-116
ZFIN|ZDB-GENE-030131-1830 smurf2 "SMAD specific E3 ubiquitin protein ligase 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 1247 (444.0 bits), Expect = 5.3e-127, P = 5.3e-127
 Identities = 240/354 (67%), Positives = 277/354 (78%)

Query:    50 RLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTL 109
             R +MKMRPK++ KRLMVKFR EEGLDYGGVAREWLYLLSHEMLNP YGLFQYSR+D YTL
Sbjct:   425 RQVMKMRPKDLWKRLMVKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTL 484

Query:   110 QINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPI 169
             QINPDS VNPEHLSYFHF GRI+G+AVFHGHYIDGGFT PFYK           LL KPI
Sbjct:   485 QINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYK----------QLLGKPI 534

Query:   170 TLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTED 229
             TL+D+E VDP+LH SL WIL+N ++  VLD TF VE N++G +  HELK  GK I VT+D
Sbjct:   535 TLDDMESVDPDLHNSLVWILDNDITG-VLDHTFCVEHNAYGEIIQHELKPNGKSIPVTQD 593

Query:   230 NKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSIDIHD 289
              KKEYVRLYVNWRF+RGIE QFLALQKGF E++P HLL+ FDE+ELEL++ GL  IDI+D
Sbjct:   594 TKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKAFDEKELELIVCGLGKIDIND 653

Query:   290 WKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTG--------------AAGPR 335
             WK +TRLKHCT D+ +VKWFW+ VESY EE RARLLQ  TG              AAGPR
Sbjct:   654 WKSNTRLKHCTPDSNIVKWFWRAVESYDEERRARLLQFVTGSSRVPLQGFKALQGAAGPR 713

Query:   336 LFTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEETLTCLYRID 389
             LFTIH  D+ ++NLPKAHTCFNRID+P Y+SY KLYDKL  A+EET  C + ++
Sbjct:   714 LFTIHQIDASTNNLPKAHTCFNRIDIPPYESYDKLYDKLLTAIEET--CGFAVE 765
GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0006464 "cellular protein modification process" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0016874 "ligase activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0045121 "membrane raft" evidence=IEA
UNIPROTKB|F1MLS5 Bt.110349 "E3 ubiquitin-protein ligase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NJU6 SMURF2 "E3 ubiquitin-protein ligase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1310067 Smurf2 "SMAD specific E3 ubiquitin protein ligase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LX00 Smurf2 "E3 ubiquitin-protein ligase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1913563 Smurf2 "SMAD specific E3 ubiquitin protein ligase 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0029006 lack "lethal with a checkpoint kinase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1N3W8 SMURF2 "E3 ubiquitin-protein ligase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9HAU4 SMURF2 "E3 ubiquitin-protein ligase SMURF2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9PUN2 smurf1 "E3 ubiquitin-protein ligase SMURF1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q92462PUB1_SCHPO6, ., 3, ., 2, ., -0.50430.75770.4159yesN/A
Q9V853SMUF1_DROME6, ., 3, ., 2, ., -0.69540.80040.3176yesN/A
A9JRZ0SMUF2_DANRE6, ., 3, ., 2, ., -0.69070.76240.4196yesN/A
Q9HCE7SMUF1_HUMAN6, ., 3, ., 2, ., -0.67330.76240.4240yesN/A
Q9CUN6SMUF1_MOUSE6, ., 3, ., 2, ., -0.67620.76240.4391yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query421
cd00078352 cd00078, HECTc, HECT domain; C-terminal catalytic 1e-141
smart00119328 smart00119, HECTc, Domain Homologous to E6-AP Carb 1e-129
COG5021872 COG5021, HUL4, Ubiquitin-protein ligase [Posttrans 1e-125
pfam00632298 pfam00632, HECT, HECT-domain (ubiquitin-transferas 2e-99
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information 
 Score =  406 bits (1047), Expect = e-141
 Identities = 147/343 (42%), Positives = 208/343 (60%), Gaps = 21/343 (6%)

Query: 50  RLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTL 109
           R + K+   +++K L V+F  EEG+D GGV RE+  L+S E+ NP YGLF+Y+ +D+  L
Sbjct: 16  RQLSKVSSSDLKKVLEVEFVGEEGIDAGGVTREFFTLVSKELFNPSYGLFRYTPDDSGLL 75

Query: 110 QINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPI 169
             NP S  + +HL  F F GR++G A++ G  +D  F          +  FYK LL KP+
Sbjct: 76  YPNPSSFADEDHLKLFRFLGRLLGKALYEGRLLDLPF----------SRAFYKKLLGKPL 125

Query: 170 TLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNS-FGVLKVHELKGGGKDIQVTE 228
           +LED+E +DPEL++SL  +L+N    D L+ TF +E++S FG     ELK GG+DI VT 
Sbjct: 126 SLEDLEELDPELYKSLKELLDNDGDEDDLELTFTIELDSSFGGAVTVELKPGGRDIPVTN 185

Query: 229 DNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSIDIH 288
           +NK+EYV LYV++R  +GIE+Q  A + GF+E++P  LL  F   ELEL+I G   ID+ 
Sbjct: 186 ENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLE 245

Query: 289 DWKQHTRLKHCTSDT-PVVKWFWQIVESYSEEMRARLLQCSTG---------AAGPRLFT 338
           D K++T  K   S   P ++WFW+++ES++ E R + LQ  TG         A     FT
Sbjct: 246 DLKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNPKFT 305

Query: 339 IHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEET 381
           I    SP D LP AHTCFN + LP Y S + L +KL  A+ E 
Sbjct: 306 IRRVGSPDDRLPTAHTCFNLLKLPPYSSKEILREKLLYAINEG 348

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 421
COG5021872 HUL4 Ubiquitin-protein ligase [Posttranslational m 100.0
cd00078352 HECTc HECT domain; C-terminal catalytic domain of 100.0
smart00119336 HECTc Domain Homologous to E6-AP Carboxyl Terminus 100.0
KOG0941|consensus850 100.0
KOG0939|consensus720 100.0
KOG0942|consensus1001 100.0
KOG4427|consensus1096 100.0
PF00632317 HECT: HECT-domain (ubiquitin-transferase); InterPr 100.0
KOG0170|consensus621 100.0
KOG0940|consensus358 100.0
KOG0943|consensus3015 100.0
COG5021872 HUL4 Ubiquitin-protein ligase [Posttranslational m 98.23
KOG0941|consensus850 98.1
smart00119336 HECTc Domain Homologous to E6-AP Carboxyl Terminus 97.92
cd00078352 HECTc HECT domain; C-terminal catalytic domain of 97.9
PF00632317 HECT: HECT-domain (ubiquitin-transferase); InterPr 97.83
KOG0939|consensus720 97.52
KOG0940|consensus358 97.02
KOG0170|consensus621 94.59
KOG0942|consensus1001 93.11
KOG4427|consensus1096 82.98
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=5.3e-83  Score=678.37  Aligned_cols=371  Identities=44%  Similarity=0.779  Sum_probs=338.0

Q ss_pred             cceeecchhHhhhhhhhhccccccCCCCCCCceEEEcChHHHHHHH---hccCcccccceEEEEEeccccccCCchHHHH
Q psy8383           7 IISYYNEDAAQGDAQETYGEVSRRGGARLRGRPLSILSNGTFERLI---MKMRPKEMRKRLMVKFRAEEGLDYGGVAREW   83 (421)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~R~~i~~~~~---~~~~~~~l~~~l~V~F~gE~giD~GG~~REf   83 (421)
                      ++.+..++.+...+...+--.....+...+.++|.|||++++++.+   ....+..+++.|+|+|.||+|+|+||++|||
T Consensus       484 ~~~~~~~r~~~~~r~~l~~~~~~~~~~~~~~l~I~VrRd~vf~Dsy~~i~~~~~~~~k~~L~i~F~~EeGiD~GGltrE~  563 (872)
T COG5021         484 LNKLDIRRIKEDKRRKLFYSLKQKAKIFDPYLHIKVRRDRVFEDSYREIMDESGDDLKKTLEIEFVGEEGIDAGGLTREW  563 (872)
T ss_pred             hchhHHHHHHHHHHHHHHHHHhhhccccCcceEEEEecccchHHHHHHHHHhchhhhcceEEEEecCcccccCCccchHH
Confidence            3333344444433333322222233455778999999999999554   4556667777899999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCccccCCccccccCCCCCCChhhHHHHHHHHHHHHHHHhcCcccccCCCChhhhhcccchhHHHh
Q psy8383          84 LYLLSHEMLNPQYGLFQYSREDNYTLQINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKM  163 (421)
Q Consensus        84 f~~l~~el~~~~~~lF~~~~~~~~~~~~~p~~~~~~~~l~~f~~lG~llg~al~~~~~l~~~f~~~f~~~~~~~~~f~k~  163 (421)
                      |.++++++++|.++||..+.++.+.+++||.+..+|+++++|+|+|++||+||+++..++++|+.+          |||+
T Consensus       564 ~~lLs~~~Fnp~y~LF~y~t~d~~~~~~n~~s~~npe~L~yf~fiGrvIGkaIyd~~~LD~~F~~~----------fyKk  633 (872)
T COG5021         564 LFLLSKEMFNPDYGLFEYITEDLYTLPINPLSSINPEHLSYFKFLGRVIGKAIYDSRILDVQFSKA----------FYKK  633 (872)
T ss_pred             HHHHhHHhcCCcccceeeecccccccCcCccccCCHHHHHHHHHHHHHHHHHHHhcceeeecchHH----------HHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999988          9999


Q ss_pred             hhCCCCCcchhhhcCHHHHHhhhHHHhcCCCcccccceeEEEeecCCceeEEEccCCCcceecCCCcHHHHHHHHHHhHH
Q psy8383         164 LLNKPITLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTEDNKKEYVRLYVNWRF  243 (421)
Q Consensus       164 Llg~~~t~~DL~~~D~~l~~sL~~l~~~~~~~~~~~l~F~~~~~~~g~~~~~eL~~~G~~~~VT~~N~~eyv~~~~~~~l  243 (421)
                      |++.+++++|+.++||++|++|.+|++++.++..++++|+++.+.+|..++|||||||++++||.+||.+||.++++|++
T Consensus       634 lL~~~~sl~Dl~s~Dpe~y~sLv~ll~~~~d~~~l~l~Fsve~~~fg~~~tVeLipnG~ni~VT~~Nk~eYV~~vvdy~L  713 (872)
T COG5021         634 LLGKPVSLVDLESLDPELYRSLVWLLNNDIDETILDLTFTVEDDSFGESRTVELIPNGRNISVTNENKKEYVKKVVDYKL  713 (872)
T ss_pred             HhCCCCchhhhhhcCHHHHHHHHHHHcCCCCcceeeeeEEEeecccCceeEEEeccCCccccccchHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999983389999999999999999999999999999999999999999999999


Q ss_pred             hhcHHHHHHHHhhcccccccccccCCCCHHHHHHHHhCCCC-CcccccccceEecCCCCCchHHHHHHHHHhhCCHHHHH
Q psy8383         244 MRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTS-IDIHDWKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRA  322 (421)
Q Consensus       244 ~~~i~~~~~afr~Gf~~vip~~~l~~fs~~eL~~licG~~~-id~~~l~~~~~~~g~~~~~~~i~~Fw~vl~~~s~eer~  322 (421)
                      ..++++|++||..||..|+|.+++++|++.||+.||||.++ ||+++||++|.|.||++++++|.|||+++++|+.|+|+
T Consensus       714 ~k~ie~Q~~AF~~GF~~ii~~~~i~iF~e~ELe~LI~G~~e~iDidd~K~~T~Y~GY~~~s~~I~wFWeii~~f~~eer~  793 (872)
T COG5021         714 NKRVEKQFSAFKSGFSEIIPPDLLQIFDESELELLIGGIPEDIDIDDWKSNTAYHGYTEDSPIIVWFWEIISEFDFEERA  793 (872)
T ss_pred             hhhHHHHHHHHHhhHHHhcCHHHHhhcCHHHHHHHHCCCCccccHHHHhhcccccccccCCcHHHHHHHHHHHhCHHHHh
Confidence            99999999999999999999999999999999999999998 99999999999999999999999999999999999999


Q ss_pred             HhHhhhcCC--------------CCCCCceEeeCCCCCCCCceeccccCeeecCCCCCHHHHHHHHHHhhhcCcccccc
Q psy8383         323 RLLQCSTGA--------------AGPRLFTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEETLTCLYR  387 (421)
Q Consensus       323 ~fL~F~TGs--------------~~p~~~~i~~~~~~~~~LP~A~TCf~~L~LP~Yss~e~l~ekL~~AI~~~~~f~~~  387 (421)
                      +|||||||+              .+|..|+|+..+.++++||+||||||+|+||.|+|||+|++||.+||++|.||+++
T Consensus       794 klLQFvTGtsriPi~GFk~L~~~~~~~kf~I~~~g~~~~rLP~ahTCFN~L~LP~YsSke~Lr~kL~~AI~Eg~GFg~~  872 (872)
T COG5021         794 KLLQFVTGTSRIPINGFKDLQGSDGVRKFTIEKGGTDDDRLPSAHTCFNRLKLPEYSSKEKLRSKLLTAINEGAGFGLL  872 (872)
T ss_pred             hhheeccCCCCCCCCChhhcCCCcccceeeeecCCCccccCCchhhhhhhccCCCCCCHHHHHHHHHHHHHhccCcCcC
Confidence            999999998              23446788888888999999999999999999999999999999999999999874

>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>KOG0941|consensus Back     alignment and domain information
>KOG0939|consensus Back     alignment and domain information
>KOG0942|consensus Back     alignment and domain information
>KOG4427|consensus Back     alignment and domain information
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] Back     alignment and domain information
>KOG0170|consensus Back     alignment and domain information
>KOG0940|consensus Back     alignment and domain information
>KOG0943|consensus Back     alignment and domain information
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941|consensus Back     alignment and domain information
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] Back     alignment and domain information
>KOG0939|consensus Back     alignment and domain information
>KOG0940|consensus Back     alignment and domain information
>KOG0170|consensus Back     alignment and domain information
>KOG0942|consensus Back     alignment and domain information
>KOG4427|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query421
1zvd_A380 Regulation Of Smurf2 Ubiquitin Ligase Activity By A 1e-132
3olm_A429 Structure And Function Of A Ubiquitin Binding Site 2e-95
1nd7_A374 Conformational Flexibility Underlies Ubiquitin Liga 3e-90
2xbb_A386 Nedd4 Hect:ub Complex Length = 386 3e-90
3tug_A398 Crystal Structure Of The Hect Domain Of Itch E3 Ubi 4e-89
3jvz_C385 E2~ubiquitin-Hect Length = 385 1e-87
3jw0_C385 E2~ubiquitin-Hect Length = 385 2e-87
2oni_A392 Catalytic Domain Of The Human Nedd4-Like E3 Ligase 1e-85
3g1n_A388 Catalytic Domain Of The Human E3 Ubiquitin-Protein 2e-71
3h1d_A405 Structure Of The Huwe1 Hect Domain Length = 405 3e-71
1c4z_A358 Structure Of E6ap: Insights Into Ubiquitination Pat 4e-39
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The E2 To The Hect Domain Length = 380 Back     alignment and structure 
Iteration: 1

 Score =  468 bits (1204), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/346 (66%), Positives = 265/346 (76%), Gaps = 25/346 (7%)
Query: 50  RLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTL 109
           R + K RPK++ KRL +KFR EEGLDYGGVAREWLYLLSHE LNP YGLFQYSR+D YTL
Sbjct: 40  RQVXKXRPKDLWKRLXIKFRGEEGLDYGGVAREWLYLLSHEXLNPYYGLFQYSRDDIYTL 99
Query: 110 QINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPI 169
           QINPDS VNPEHLSYFHF GRI G AVFHGHYIDGGFT PFYK           LL K I
Sbjct: 100 QINPDSAVNPEHLSYFHFVGRIXGXAVFHGHYIDGGFTLPFYK----------QLLGKSI 149
Query: 170 TLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTED 229
           TL+D E VDP+LH SL WILEN ++  VLD TF VE N++G +  HELK  GK I V E+
Sbjct: 150 TLDDXELVDPDLHNSLVWILENDITG-VLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEE 208
Query: 230 NKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSIDIHD 289
           NKKEYVRLYVNWRF+RGIE QFLALQKGF E++P HLL+ FDE+ELEL+I GL  ID++D
Sbjct: 209 NKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVND 268
Query: 290 WKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCST--------------GAAGPR 335
           WK +TRLKHCT D+ +VKWFW+ VE + EE RARLLQ  T              GAAGPR
Sbjct: 269 WKVNTRLKHCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPR 328
Query: 336 LFTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEET 381
           LFTIH  D+ ++NLPKAHTCFNRID+P Y+SY+KLY+KL  A+EET
Sbjct: 329 LFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEET 374
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 429 Back     alignment and structure
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation Mediated By The Wwp1 Hect Domain E3 Ligase Length = 374 Back     alignment and structure
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex Length = 386 Back     alignment and structure
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin Ligase Length = 398 Back     alignment and structure
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase Length = 392 Back     alignment and structure
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase Huwe1 Length = 388 Back     alignment and structure
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain Length = 405 Back     alignment and structure
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 358 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query421
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 1e-179
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 1e-178
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 1e-173
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 1e-173
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 1e-170
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 1e-155
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 6e-36
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380 Back     alignment and structure
 Score =  504 bits (1301), Expect = e-179
 Identities = 235/346 (67%), Positives = 272/346 (78%), Gaps = 25/346 (7%)

Query: 50  RLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTL 109
           R +MKMRPK++ KRLM+KFR EEGLDYGGVAREWLYLLSHEMLNP YGLFQYSR+D YTL
Sbjct: 40  RQVMKMRPKDLWKRLMIKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTL 99

Query: 110 QINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPI 169
           QINPDS VNPEHLSYFHF GRI+G+AVFHGHYIDGGFT PFYK           LL K I
Sbjct: 100 QINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYK----------QLLGKSI 149

Query: 170 TLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTED 229
           TL+D+E VDP+LH SL WILEN ++  VLD TF VE N++G +  HELK  GK I V E+
Sbjct: 150 TLDDMELVDPDLHNSLVWILENDIT-GVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEE 208

Query: 230 NKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSIDIHD 289
           NKKEYVRLYVNWRF+RGIE QFLALQKGF E++P HLL+ FDE+ELEL+I GL  ID++D
Sbjct: 209 NKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVND 268

Query: 290 WKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTG--------------AAGPR 335
           WK +TRLKHCT D+ +VKWFW+ VE + EE RARLLQ  TG              AAGPR
Sbjct: 269 WKVNTRLKHCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPR 328

Query: 336 LFTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEET 381
           LFTIH  D+ ++NLPKAHTCFNRID+P Y+SY+KLY+KL  A+EET
Sbjct: 329 LFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEET 374
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405 Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374 Back     alignment and structure
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392 Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358 Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Length = 118 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query421
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 100.0
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 100.0
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 100.0
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 100.0
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 100.0
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 100.0
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 99.97
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 98.77
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 98.24
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 98.22
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 98.19
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 98.16
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 98.15
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 98.13
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.6e-87  Score=667.54  Aligned_cols=341  Identities=68%  Similarity=1.169  Sum_probs=317.5

Q ss_pred             CCCceEEEcChHHHHHH---HhccCcccccceEEEEEeccccccCCchHHHHHHHHHHHhcCCCCCCCccccCCcccccc
Q psy8383          35 LRGRPLSILSNGTFERL---IMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTLQI  111 (421)
Q Consensus        35 ~~~~~l~V~R~~i~~~~---~~~~~~~~l~~~l~V~F~gE~giD~GG~~REff~~l~~el~~~~~~lF~~~~~~~~~~~~  111 (421)
                      ..+++|+|+|++|++++   +....+++++++|+|+|.||+|+|+|||+||||+++++|+++|+++||..++++.+.+++
T Consensus        22 ~~~~~l~V~R~~i~~ds~~~l~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~~~~~~~~  101 (380)
T 1zvd_A           22 AGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQI  101 (380)
T ss_dssp             SCEEEEEECSTTHHHHHHHHHHTSCGGGGGSEEEEEETTCCCSCHHHHHHHHHHHHHHHHTSGGGSSEEEETTEEEEEEE
T ss_pred             CCceEEEEccCCHHHHHHHHHHccCHHHhcCceEEEECCCcCcCCCccHHHHHHHHHHHHcCCcCCCeeccCCCCeeecc
Confidence            45679999999999965   455678889999999999999999999999999999999999999999998888888899


Q ss_pred             CCCCCCChhhHHHHHHHHHHHHHHHhcCcccccCCCChhhhhcccchhHHHhhhCCCCCcchhhhcCHHHHHhhhHHHhc
Q psy8383         112 NPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPITLEDIEGVDPELHRSLTWILEN  191 (421)
Q Consensus       112 ~p~~~~~~~~l~~f~~lG~llg~al~~~~~l~~~f~~~f~~~~~~~~~f~k~Llg~~~t~~DL~~~D~~l~~sL~~l~~~  191 (421)
                      ||++..+++++++|+++|++||+||++|.+++++|+++          |||+|+|.+++++||+++||+++++|++|+++
T Consensus       102 np~s~~~~~~l~~f~flG~l~g~al~~~~~ld~~f~~~----------f~k~llg~~~~l~Dl~~~Dp~l~~sL~~ll~~  171 (380)
T 1zvd_A          102 NPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLP----------FYKQLLGKSITLDDMELVDPDLHNSLVWILEN  171 (380)
T ss_dssp             CTTGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHH----------HHHHHTTCCCCSTTHHHHCHHHHHHHHHHHHS
T ss_pred             CchhhcChHHHHHHHHhHHHHHHHHhCCceeCCcCCHH----------HHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhC
Confidence            99988888999999999999999999999999999998          99999999999999999999999999999999


Q ss_pred             CCCcccccceeEEEeecCCceeEEEccCCCcceecCCCcHHHHHHHHHHhHHhhcHHHHHHHHhhcccccccccccCCCC
Q psy8383         192 TLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTEDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFD  271 (421)
Q Consensus       192 ~~~~~~~~l~F~~~~~~~g~~~~~eL~~~G~~~~VT~~N~~eyv~~~~~~~l~~~i~~~~~afr~Gf~~vip~~~l~~fs  271 (421)
                      +.+ +.++++|+++.+.+|...++||+|||++++||.+||++||+++++|+++.+++.|++||++||.+|+|.++|++|+
T Consensus       172 d~~-~~l~ltF~~~~~~~g~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~  250 (380)
T 1zvd_A          172 DIT-GVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFD  250 (380)
T ss_dssp             CCT-TTSCCCSEEEEEETTEEEEEESSTTCCCCCCTTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHSCGGGGTTCC
T ss_pred             Ccc-ccccceeEEeeecCCcEeEEecCCCCCCCccccccHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHhHHHHHhCCC
Confidence            877 5799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCcccccccceEecCCCCCchHHHHHHHHHhhCCHHHHHHhHhhhcCCCC--------------CCCc
Q psy8383         272 ERELELVIGGLTSIDIHDWKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAAG--------------PRLF  337 (421)
Q Consensus       272 ~~eL~~licG~~~id~~~l~~~~~~~g~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TGs~~--------------p~~~  337 (421)
                      |+||+.++||.++||+++|+++|.|.||++++++|+|||+++++||+++|++||+|+||+..              |+.|
T Consensus       251 ~~ELe~li~G~~~id~~dl~~~t~y~gy~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~gp~~f  330 (380)
T 1zvd_A          251 EKELELIICGLGKIDVNDWKVNTRLKHCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLF  330 (380)
T ss_dssp             HHHHHHHHHCBSSCCHHHHHHTEEEESSCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSSBCTTCGGGCEETTEECCE
T ss_pred             HHHHHHhhCCCCCCChhhhhhccEecCCCCCcchhhhHHHHHHhCCHHHHHHHHHHHhCCCCCCCcchhhccccCCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999821              2357


Q ss_pred             eEeeCCCCCCCCceeccccCeeecCCCCCHHHHHHHHHHhhhcCccccc
Q psy8383         338 TIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEETLTCLY  386 (421)
Q Consensus       338 ~i~~~~~~~~~LP~A~TCf~~L~LP~Yss~e~l~ekL~~AI~~~~~f~~  386 (421)
                      +|+..+.++++||+||||||+|+||.|+|+|+|++||++||++++||++
T Consensus       331 ~I~~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~GF~l  379 (380)
T 1zvd_A          331 TIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCGFAV  379 (380)
T ss_dssp             EEEECCCCTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHHCC------
T ss_pred             EEEecCCCCCCCCEEecCcCEEECCCCCCHHHHHHHHHHHHHhCCCcCc
Confidence            8886677889999999999999999999999999999999999999975
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Back     alignment and structure
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Back     alignment and structure
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 421
d1nd7a_374 d.148.1.1 (A:) WW domain-containing protein 1, WWP 1e-106
d1c4za_350 d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) 1e-87
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  316 bits (810), Expect = e-106
 Identities = 158/346 (45%), Positives = 226/346 (65%), Gaps = 25/346 (7%)

Query: 50  RLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTL 109
           + IM ++P ++R+RL V FR EEGLDYGG+AREW +LLSHE+LNP Y LF+Y+ ++NY L
Sbjct: 39  QQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCL 98

Query: 110 QINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPI 169
           QINP S +NP+HLSYF F GR I +A+FHG +ID GF+ PFYK           +L+K +
Sbjct: 99  QINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYK----------RMLSKKL 148

Query: 170 TLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTED 229
           T++D+E +D E + SL WI +N +    L+  F+V++   G +  H+LK GG +I VTE+
Sbjct: 149 TIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEE 208

Query: 230 NKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSIDIHD 289
           NK EY+ L   WRF RG+++Q  A   GF E+VP+  L+ FDE+ELE+++ G+  +D+ D
Sbjct: 209 NKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLAD 268

Query: 290 WKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAA--------------GPR 335
           W+++T  +H T ++  + WFWQ V+    E+R RLLQ  TG                GP+
Sbjct: 269 WQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQ 328

Query: 336 LFTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEET 381
            F I         LP++HTCFNR+DLP Y SY++L +KL  A+EET
Sbjct: 329 KFCIEKVG-KDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEET 373
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query421
d1nd7a_374 WW domain-containing protein 1, WWP1 {Human (Homo 100.0
d1c4za_350 Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s 100.0
d1nd7a_374 WW domain-containing protein 1, WWP1 {Human (Homo 98.06
d1c4za_350 Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s 97.9
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-80  Score=614.77  Aligned_cols=338  Identities=47%  Similarity=0.882  Sum_probs=314.1

Q ss_pred             CCCCceEEEcChHHHHHH---HhccCcccccceEEEEEeccccccCCchHHHHHHHHHHHhcCCCCCCCccccCCccccc
Q psy8383          34 RLRGRPLSILSNGTFERL---IMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTLQ  110 (421)
Q Consensus        34 ~~~~~~l~V~R~~i~~~~---~~~~~~~~l~~~l~V~F~gE~giD~GG~~REff~~l~~el~~~~~~lF~~~~~~~~~~~  110 (421)
                      ...+++|+|+|+++++++   +.++.+.+++++|+|+|+||+|+|+|||+||||+++++|+++|+.+||..++++.+.+.
T Consensus        20 ~~~~~~i~V~R~~l~~d~~~~l~~~~~~~l~~~l~V~F~gE~g~D~GG~~rEff~~l~~el~~p~~~lf~~~~~~~~~~~   99 (374)
T d1nd7a_          20 LPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQ   99 (374)
T ss_dssp             CSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETTTCCCCCTHHHHHHHHHHHHHHTCGGGSSEEESSSSSCCEE
T ss_pred             CCCceEEEEccccHHHHHHHHHHhcCHHHhCCCeEEEECCCCccCCCccHHHHHHHHHHHHcCCccCCeeecCCCCcccc
Confidence            345789999999999955   55667888999999999999999999999999999999999999999999888888888


Q ss_pred             cCCCCCCChhhHHHHHHHHHHHHHHHhcCcccccCCCChhhhhcccchhHHHhhhCCCCCcchhhhcCHHHHHhhhHHHh
Q psy8383         111 INPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPITLEDIEGVDPELHRSLTWILE  190 (421)
Q Consensus       111 ~~p~~~~~~~~l~~f~~lG~llg~al~~~~~l~~~f~~~f~~~~~~~~~f~k~Llg~~~t~~DL~~~D~~l~~sL~~l~~  190 (421)
                      +||.+...++++++|+++|+++|+||+++.+++++|+++          |||+|+|.+++++||+++||+++++|.++++
T Consensus       100 ~~p~~~~~~~~~~~f~~lG~lig~al~~~~~~~~~f~~~----------f~k~Llg~~~t~~DL~~iD~~~~~sl~~l~~  169 (374)
T d1nd7a_         100 INPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLP----------FYKRMLSKKLTIKDLESIDTEFYNSLIWIRD  169 (374)
T ss_dssp             ECGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHH----------HHHHHTTCCCCHHHHHTTCHHHHHHHHHHHS
T ss_pred             cCCccccChhHHHHHHHhHHHHHHHHHcCcccCCCccHH----------HHHHhcCCCCCHHHHHHhCHHHHHhHHHHHh
Confidence            999888888899999999999999999999999999999          9999999999999999999999999999999


Q ss_pred             cCCCcccccceeEEEeecCCceeEEEccCCCcceecCCCcHHHHHHHHHHhHHhhcHHHHHHHHhhcccccccccccCCC
Q psy8383         191 NTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTEDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPF  270 (421)
Q Consensus       191 ~~~~~~~~~l~F~~~~~~~g~~~~~eL~~~G~~~~VT~~N~~eyv~~~~~~~l~~~i~~~~~afr~Gf~~vip~~~l~~f  270 (421)
                      ++.++..++++|+++.+..|...+++|++||++++||.+|+++||++++++++.++++.|++|||+||++|+|...++.|
T Consensus       170 ~~~e~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~VT~~N~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f  249 (374)
T d1nd7a_         170 NNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYF  249 (374)
T ss_dssp             SCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSCGGGGTTC
T ss_pred             ccccccccceeEEEEeecCCCcceeecCCCCCcccchHHHHHHHHHHHHHHHHhccHHHHHHHHHHhHHHhCCHHHHhhC
Confidence            88776678899999988888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccccccceEecCCCCCchHHHHHHHHHhhCCHHHHHHhHhhhcCCCCCC--------------C
Q psy8383         271 DERELELVIGGLTSIDIHDWKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAAGPR--------------L  336 (421)
Q Consensus       271 s~~eL~~licG~~~id~~~l~~~~~~~g~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TGs~~p~--------------~  336 (421)
                      +|+||+.++||.+++|+++|++++.|.||++++++|+|||+++++||+++|++||+|+||+...|              .
T Consensus       250 ~~~eL~~licG~~~id~~~l~~~~~y~gy~~~s~~i~~fw~vl~~~t~ee~~~fL~FvTGs~rlP~~G~~~l~~~~~~~~  329 (374)
T d1nd7a_         250 DEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQK  329 (374)
T ss_dssp             CHHHHHHHHHCCCCCCHHHHHHTEEEESCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGGCEETTEECC
T ss_pred             CHHHHHHhhCCCCCCCHHHHhhheeeccCCCCCHHHHHHHHHHHhcCHHHHHHhheeecCCCCCCCcchhhhcccCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999993221              2


Q ss_pred             ceEeeCCCCCCCCceeccccCeeecCCCCCHHHHHHHHHHhhhcCc
Q psy8383         337 FTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEETL  382 (421)
Q Consensus       337 ~~i~~~~~~~~~LP~A~TCf~~L~LP~Yss~e~l~ekL~~AI~~~~  382 (421)
                      +.|.. ..++++||+||||||+|+||.|+|+|+|++||++||+||+
T Consensus       330 ~~i~~-~~~~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI~~~e  374 (374)
T d1nd7a_         330 FCIEK-VGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE  374 (374)
T ss_dssp             EEEEC-CSCTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred             eeecc-CCCCCCCCchhhhhcEeeCCCCCCHHHHHHHHHHHHHhcC
Confidence            33332 3466799999999999999999999999999999999984
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure