Psyllid ID: psy8413

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790------

MSNRRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLETDLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNCQWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPWVGRELYEKKEQALALLLLNIELYLNKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKLRQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPEEPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKYNMKIPLEYCIVEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAWFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPLLPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGADPINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNRVGKELLDAKERLKHVSSESEEESDGEGGKKNEEKISEEVVEKIEEKLEAAQADQKNLFLIIFQRFIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQDLEPHILDVFHQFLALNA

cccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHccccccccccccccccccccccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHcHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHccccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccc

cccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHcHHHHHHHHHHccccccccccccccccccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccEEcHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHEEHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcc

msnrrrpheeddgyERAYKkrrrvpenqelEDRFEVLIVKVGERSTTSLESHLDGLAKVLETDLATYRVKILRILTDCatkypekccIYTTLVGLlnaknynfgGEFVELMVKTFKDALKNCQWNAARYALRFLADLVNCHVISTNSLLQLLENMLdaskedgvpnvrkDWYVYAVLSCLPWVGRELYEKKEQALALLLLNIELYLNKRSKKHVAALQvwssdkphpqeeyLDCLWAQIVKLRqdnwtdhhiyrpytvfdSRLSVALqhnlpniilpphhdsliypmpsvvfrmfdytdcpeepsisplpgahsiERFLIEEHLLQIIEMNYFERKDCATQLLKYNMKIPLEYCIVEIIFgelfrlptpkylEIFYGSVLIELckmkpdtmpQVLAQATVILFMRIESMNTACFDRFVAWFAYHLSNFQFQWSWEDWESALKLdlehpkpkfiHEVLNKCVRLSYHQRikeivppqfapllplkpephfkynqeggehlpgFVYAQELINAIKKKQSSPNEIMAILNkipsssmdedgadpinplkiDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQMMAVLIDKMLKTQLLHCSSVANWifskemqpefTKLYVWEILHLTIKKMSKYVNRVGKELLDAKERLKhvsseseeesdgeggkknEEKISEEVVEKIEEKLEAAQADQKNLFLIIFQRFIMILSEHLvrcdtdgvdfnthWYKWTIGRLQQVLLAHHEQVQKYSSTLETLlftqdlephILDVFHQFLALNA

msnrrrpheeddgyeraykkrrrvpenqeledrfEVLIVKVGersttsleshlDGLAKVLETDLATYRVKILRILtdcatkypEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNCQWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPWVGRELYEKKEQALALLLLNIELYLNKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKLRQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPEEPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKYNMKIPLEYCIVEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAWFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPLLPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGADPINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNRVGKELLDAkerlkhvsseseeesdgeggkkneeKISEEVVEKIEEKLEAAQADQKNLFLIIFQRFIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQDLEPHILDVFHQFLALNA

MSNRRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLETDLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNCQWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPWVGRelyekkeqalallllnielylnKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKLRQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPEEPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKYNMKIPLEYCIVEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAWFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPLLPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGADPINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNRVGKELLDAKERLKHVsseseeesdgeggkkneekiseevvekieekleAAQADQKNLFLIIFQRFIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQDLEPHILDVFHQFLALNA

********************************RFEVLIVKVGERSTTSLESHLDGLAKVLETDLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNCQWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPWVGRELYEKKEQALALLLLNIELYLNKRSKKHVAALQVWSSD***PQEEYLDCLWAQIVKLRQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPEEPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKYNMKIPLEYCIVEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAWFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPLLPLKPEPHFKYNQEGGEHLPGFVYAQELINAI*****************************INPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNRVGKELL***********************************************QKNLFLIIFQRFIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQDLEPHILDVFHQFLAL**

*********************************FEVLIVKVGERSTTSLESHLDGLAKVLETDLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNCQWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPWVGRELY****QALALLLLNIELYLNKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKLRQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPEEPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKYNMKIPLEYCIVEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAWFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPLLPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQS**NEIMAIL****************NPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNRV**********************************************EAAQADQKNLFLIIFQRFIMILS***********DFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQDLEPHILDVFHQFLALN*

**************ERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLETDLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNCQWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPWVGRELYEKKEQALALLLLNIELYLNKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKLRQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPEEPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKYNMKIPLEYCIVEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAWFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPLLPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGADPINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNRVGKELLDAKER**********************KISEEVVEKIEEKLEAAQADQKNLFLIIFQRFIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQDLEPHILDVFHQFLALNA

************************PENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLETDLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNCQWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPWVGRELYEKKEQALALLLLNIELYLNKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKLRQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPEEPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKYNMKIPLEYCIVEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAWFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPLLPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGADPINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNRVGKELLDAKERLKHV********************SEEVVEKIEEKLEAAQADQKNLFLIIFQRFIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQDLEPHILDVFHQFLALNA

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MSNRRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLETDLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNCQWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPWVGRELYEKKEQALALLLLNIELYLNKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKLRQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPEEPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKYNMKIPLEYCIVEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAWFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPLLPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGADPINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNRVGKELLDAKERLKHVSSESEEESDGEGGKKNExxxxxxxxxxxxxxxxxxxxxQKNLFLIIFQRFIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQDLEPHILDVFHQFLALNA

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		796	2.2.26 [Sep-21-2011]
B4NC41		800	Nuclear cap-binding prote	N/A	N/A	0.993	0.988	0.667	0.0
Q7PX35		807	Nuclear cap-binding prote	yes	N/A	0.984	0.971	0.659	0.0
Q7K4N3		800	Nuclear cap-binding prote	yes	N/A	0.993	0.988	0.668	0.0
B4I0W6		800	Nuclear cap-binding prote	N/A	N/A	0.993	0.988	0.667	0.0
B3NU52		800	Nuclear cap-binding prote	N/A	N/A	0.993	0.988	0.664	0.0
B4Q034		800	Nuclear cap-binding prote	N/A	N/A	0.993	0.988	0.665	0.0
B4JM29		800	Nuclear cap-binding prote	N/A	N/A	0.993	0.988	0.663	0.0
B3MS75		800	Nuclear cap-binding prote	N/A	N/A	0.993	0.988	0.663	0.0
Q29G82		800	Nuclear cap-binding prote	yes	N/A	0.993	0.988	0.659	0.0
B4GW22		800	Nuclear cap-binding prote	N/A	N/A	0.993	0.988	0.659	0.0

>sp\|B4NC41\|NCBP1_DROWI Nuclear cap-binding protein subunit 1 OS=Drosophila willistoni GN=Cbp80 PE=3 SV=1	Back alignment and function desciption

 Score = 1095 bits (2831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/805 (66%), Positives = 643/805 (79%), Gaps = 14/805 (1%)

Query: 1   MSNRRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVL 60
           MS RR    ED+GY+    KRRRV ENQE+EDR E LI++VGERST+S+ES+L+GL  VL
Sbjct: 1   MSRRRAHDTEDEGYDHRRNKRRRVSENQEIEDRLESLILRVGERSTSSVESNLEGLVSVL 60

Query: 61  ETDLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALK 120
           E DL T+R+KILRIL+DCA + PEKC +YTTLVGLLNAKNY FGGEFV+ MVKTFK++LK
Sbjct: 61  EADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLK 120

Query: 121 NCQWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCL 180
            C+W+AARY+LRFLADLVNCHVIS  SLLQLL+ M+D S ED VP VR+DW+V+AVLS L
Sbjct: 121 LCRWDAARYSLRFLADLVNCHVISATSLLQLLDTMIDVSNEDTVPQVRRDWFVFAVLSTL 180

Query: 181 PWVGRELYEKKEQALALLLLNIELYLNKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIV 240
           PWVGR+LYEKKE AL  LLL IE+YLNKRSKKH  AL+VWSSD PHPQEEYLDCLWAQI 
Sbjct: 181 PWVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSDAPHPQEEYLDCLWAQIR 240

Query: 241 KLRQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDC 300
           KLRQDNW + HI RPY VFDS L  ALQHNLP II PPHHD+  YPMP VV+RMFDYTDC
Sbjct: 241 KLRQDNWAEKHIPRPYLVFDSILCEALQHNLPQIIPPPHHDAFEYPMPWVVYRMFDYTDC 300

Query: 301 PEEPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKYNM--KIPLEYCIVEI 358
           P+ P+   LPGAHSIERFLIEEHL  IIE +++ERKDCA QLL +    KIPLEYCIVE+
Sbjct: 301 PDGPN---LPGAHSIERFLIEEHLHHIIETHHYERKDCAAQLLNFPFKHKIPLEYCIVEV 357

Query: 359 IFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFV 418
           IF ELF +PTP+YL+I YGS+LIELCK++P T+PQVLAQAT ILFMRI+SMNT+CFDRFV
Sbjct: 358 IFAELFHMPTPRYLDICYGSILIELCKLQPGTLPQVLAQATEILFMRIDSMNTSCFDRFV 417

Query: 419 AWFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFA 478
            WF+YHLSNF+F WSW++W+S L L+ EHP+PKFI EVL KC+RLSYHQRI E++P  +A
Sbjct: 418 NWFSYHLSNFKFTWSWDEWDSCLLLEAEHPRPKFIQEVLQKCLRLSYHQRITEMMPTTYA 477

Query: 479 PLLPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSS--SMDE 536
            L+PL P P++KY  E   +LPG   A +L+ AI++K  +P E++ IL +IPSS  S +E
Sbjct: 478 KLIPLTPVPNYKYANEEAANLPGTTVAHQLVVAIRQK-CTPEEVVNILKEIPSSGYSGEE 536

Query: 537 DGADPINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFE 596
                 N LKIDVF Q LL LGSKSFSHSFAA+SKF+ V +  +  TEE+Q  +L ++FE
Sbjct: 537 MSDGSFNALKIDVFVQTLLNLGSKSFSHSFAAISKFHAVFRA-LAETEEAQICILHNIFE 595

Query: 597 LWHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYV 656
           LW  HQQMM VLIDK+LK Q++ CS+VA WIFSKEM  EFTK+Y+WEILHLTIKKM+K+V
Sbjct: 596 LWSSHQQMMVVLIDKLLKLQIVDCSAVATWIFSKEMTGEFTKMYLWEILHLTIKKMNKHV 655

Query: 657 NRVGKELLDAKERLKHVSSESEEESDGEGGKKNE-----EKISEEVVEKIEEKLEAAQAD 711
            ++  EL DAK++L    S S +  +    K+ +     +K SEEVVE++EEKLEAA  +
Sbjct: 656 IKLNTELSDAKDKLSKADSSSSDSDEDTPHKRKKPITHADKPSEEVVERMEEKLEAANVN 715

Query: 712 QKNLFLIIFQRFIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTL 771
           QK LFLI+FQRFIMILSEHL+R DTDG D +T WY+WTIGRLQQV L HHEQVQKYSSTL
Sbjct: 716 QKRLFLIVFQRFIMILSEHLLRSDTDGRDPDTDWYRWTIGRLQQVFLMHHEQVQKYSSTL 775

Query: 772 ETLLFTQDLEPHILDVFHQFLALNA 796
           ETLLFT DL+ HIL+VF QF+AL A
Sbjct: 776 ETLLFTSDLDTHILEVFQQFVALRA 800

Component of the cap-binding complex (CBC), which binds co-transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference via its interaction with Ars2 and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp80 does not bind directly capped RNAs (m7GpppG-capped RNA) but is required to stabilize the movement of the N-terminal loop of Cbp20 and lock the CBC into a high affinity cap-binding state with the cap structure.
Drosophila willistoni (taxid: 7260)

>sp\|Q7PX35\|NCBP1_ANOGA Nuclear cap-binding protein subunit 1 OS=Anopheles gambiae GN=Cbp80 PE=3 SV=4	Back alignment and function description

>sp\|Q7K4N3\|NCBP1_DROME Nuclear cap-binding protein subunit 1 OS=Drosophila melanogaster GN=Cbp80 PE=1 SV=1	Back alignment and function description

>sp\|B4I0W6\|NCBP1_DROSE Nuclear cap-binding protein subunit 1 OS=Drosophila sechellia GN=Cbp80 PE=3 SV=1	Back alignment and function description

>sp\|B3NU52\|NCBP1_DROER Nuclear cap-binding protein subunit 1 OS=Drosophila erecta GN=Cbp80 PE=3 SV=1	Back alignment and function description

>sp\|B4Q034\|NCBP1_DROYA Nuclear cap-binding protein subunit 1 OS=Drosophila yakuba GN=Cbp80 PE=3 SV=1	Back alignment and function description

>sp\|B4JM29\|NCBP1_DROGR Nuclear cap-binding protein subunit 1 OS=Drosophila grimshawi GN=Cbp80 PE=3 SV=1	Back alignment and function description

>sp\|B3MS75\|NCBP1_DROAN Nuclear cap-binding protein subunit 1 OS=Drosophila ananassae GN=Cbp80 PE=3 SV=1	Back alignment and function description

>sp\|Q29G82\|NCBP1_DROPS Nuclear cap-binding protein subunit 1 OS=Drosophila pseudoobscura pseudoobscura GN=Cbp80 PE=3 SV=1	Back alignment and function description

>sp\|B4GW22\|NCBP1_DROPE Nuclear cap-binding protein subunit 1 OS=Drosophila persimilis GN=Cbp80 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		796
189234539		798	PREDICTED: similar to AGAP001195-PA [Tri	0.991	0.988	0.690	0.0
383848630		794	PREDICTED: nuclear cap-binding protein s	0.991	0.993	0.690	0.0
340720611		794	PREDICTED: nuclear cap-binding protein s	0.991	0.993	0.684	0.0
350412538		794	PREDICTED: nuclear cap-binding protein s	0.991	0.993	0.681	0.0
110761103		794	PREDICTED: nuclear cap-binding protein s	0.991	0.993	0.680	0.0
380015662		794	PREDICTED: LOW QUALITY PROTEIN: nuclear	0.991	0.993	0.680	0.0
307199475		790	Nuclear cap-binding protein subunit 1 [H	0.986	0.993	0.676	0.0
307181337		794	Nuclear cap-binding protein subunit 1 [C	0.991	0.993	0.682	0.0
156546902		791	PREDICTED: nuclear cap-binding protein s	0.989	0.996	0.679	0.0
322784736		781	hypothetical protein SINV_08090 [Solenop	0.976	0.994	0.680	0.0

>gi\|189234539\|ref\|XP_973056.2\| PREDICTED: similar to AGAP001195-PA [Tribolium castaneum]	Back alignment and taxonomy information

 Score = 1149 bits (2973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/802 (69%), Positives = 661/802 (82%), Gaps = 13/802 (1%)

Query: 3   NRRRPHEEDDGY----ERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAK 58
           +RRRPHEE+DGY    +RAY+KRRRV ENQE+EDR E LI++VGE+ST+SLES+L+GLA 
Sbjct: 2   SRRRPHEEEDGYAPISDRAYRKRRRVSENQEIEDRLESLILRVGEKSTSSLESNLEGLAS 61

Query: 59  VLETDLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDA 118
           VLE DL+T+RVKILRILTDCA K PEKC IYTTLVGLLN KNYNFGG+FVE MVK FK++
Sbjct: 62  VLEADLSTFRVKILRILTDCAIKMPEKCTIYTTLVGLLNVKNYNFGGDFVEYMVKNFKES 121

Query: 119 LKNCQWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLS 178
           LKNC+W+AARYALRFLADLVNCHV+S  SLLQLL+NM+DA+ ED VP VR+DWYV+A+LS
Sbjct: 122 LKNCKWDAARYALRFLADLVNCHVVSAPSLLQLLDNMIDAANEDNVPQVRRDWYVFAILS 181

Query: 179 CLPWVGRELYEKKEQALALLLLNIELYLNKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQ 238
            LPWVGRELYEKKEQAL  LL+ IE++LNKR+KKH  AL+VW+ D PHPQEEYLDCLW+Q
Sbjct: 182 TLPWVGRELYEKKEQALEHLLVQIEVFLNKRTKKHHNALRVWAIDTPHPQEEYLDCLWSQ 241

Query: 239 IVKLRQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYT 298
           I KLRQDNW + HI RPY  FDS L  ALQH+LP+I+ PPHHDS  YPMP V FR+FDYT
Sbjct: 242 IRKLRQDNWAEKHIPRPYLAFDSILCEALQHSLPSILPPPHHDSYQYPMPWVTFRLFDYT 301

Query: 299 DCPEEPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLK--YNMKIPLEYCIV 356
           DCPE P    LPGAHSIERFLIEEH+  IIEM + ERKDCA  LL   Y +KIPLEYCIV
Sbjct: 302 DCPEGPI---LPGAHSIERFLIEEHIHSIIEMYHLERKDCAAHLLNFPYKLKIPLEYCIV 358

Query: 357 EIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDR 416
           E IF ELF +PTP+YLEI YG++LIELCK++P TMPQVLAQAT +LFMRI+SMN +CFDR
Sbjct: 359 ECIFAELFHMPTPRYLEIAYGAILIELCKLQPSTMPQVLAQATEMLFMRIDSMNVSCFDR 418

Query: 417 FVAWFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQ 476
           FV WF+YHLSNFQF+WSWEDW+S L LD+EHPKPKFI E + KC+RLSYHQRI+EI+P  
Sbjct: 419 FVGWFSYHLSNFQFRWSWEDWDSCLTLDMEHPKPKFIRETMLKCMRLSYHQRIREILPDS 478

Query: 477 FAPLLPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDE 536
           F+  +P KPEP +KY +EG   LPG   A +L+ +I++K  +P E++ +L  +P+   +E
Sbjct: 479 FSCFIPAKPEPDYKYAKEGAASLPGTTAAHQLVVSIRQK-CTPEEVLGVLKDLPNPRSEE 537

Query: 537 DGADPINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFE 596
           +     NPLKIDVF Q LL LGSKSFSHSFAA+SKF  V K  +  +EE+Q  VL+++FE
Sbjct: 538 ETDSRFNPLKIDVFVQTLLNLGSKSFSHSFAAISKFLYVFKI-LAESEEAQICVLRNMFE 596

Query: 597 LWHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYV 656
           LWH HQQMM VL+DKMLK Q++ CS+VANWIFSKEM  EFTK+Y+WEILHLTIKKM+++V
Sbjct: 597 LWHHHQQMMVVLVDKMLKIQIVECSAVANWIFSKEMTAEFTKMYLWEILHLTIKKMNRHV 656

Query: 657 NRVGKELLDAKERLKHV--SSESEEESDGEGGKKNEEKISEEVVEKIEEKLEAAQADQKN 714
            ++G EL +A+E+L     S    E+ D +  + + EK +EE VE++EEKLEAAQADQKN
Sbjct: 657 IKLGGELAEAREKLARAESSESESEDEDSKKKQSDNEKPTEEYVERMEEKLEAAQADQKN 716

Query: 715 LFLIIFQRFIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETL 774
           LFLIIFQRFIMILSEHLVRCDTDG D+NTHWYKWTIGRLQQV LAHHEQVQKYSSTLETL
Sbjct: 717 LFLIIFQRFIMILSEHLVRCDTDGRDYNTHWYKWTIGRLQQVFLAHHEQVQKYSSTLETL 776

Query: 775 LFTQDLEPHILDVFHQFLALNA 796
           LFTQDL+PHIL+VF QF++L A
Sbjct: 777 LFTQDLDPHILEVFQQFVSLRA 798

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|383848630\|ref\|XP_003699951.1\| PREDICTED: nuclear cap-binding protein subunit 1-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|340720611\|ref\|XP_003398727.1\| PREDICTED: nuclear cap-binding protein subunit 1-like [Bombus terrestris]	Back alignment and taxonomy information

>gi\|350412538\|ref\|XP_003489682.1\| PREDICTED: nuclear cap-binding protein subunit 1-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|110761103\|ref\|XP_392985.3\| PREDICTED: nuclear cap-binding protein subunit 1 isoform 1 [Apis mellifera]	Back alignment and taxonomy information

>gi\|380015662\|ref\|XP_003691818.1\| PREDICTED: LOW QUALITY PROTEIN: nuclear cap-binding protein subunit 1-like [Apis florea]	Back alignment and taxonomy information

>gi\|307199475\|gb\|EFN80088.1\| Nuclear cap-binding protein subunit 1 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|307181337\|gb\|EFN68971.1\| Nuclear cap-binding protein subunit 1 [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|156546902\|ref\|XP_001599815.1\| PREDICTED: nuclear cap-binding protein subunit 1-like [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|322784736\|gb\|EFZ11562.1\| hypothetical protein SINV_08090 [Solenopsis invicta]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		796
FB\|FBgn0022942		800	Cbp80 "cap binding protein 80"	0.991	0.986	0.629	4.5e-272
UNIPROTKB\|Q09161		790	NCBP1 "Nuclear cap-binding pro	0.986	0.993	0.530	3e-227
UNIPROTKB\|F1PUP7		790	NCBP1 "Uncharacterized protein	0.986	0.993	0.528	8e-227
MGI\|MGI:1891840		790	Ncbp1 "nuclear cap binding pro	0.987	0.994	0.528	1.3e-226
UNIPROTKB\|Q5ZJZ6		793	NCBP1 "Nuclear cap-binding pro	0.991	0.994	0.525	5.6e-226
RGD\|1308973		790	Ncbp1 "nuclear cap binding pro	0.987	0.994	0.527	5.6e-226
UNIPROTKB\|Q6DIE2		791	ncbp1 "Nuclear cap-binding pro	0.987	0.993	0.525	1.2e-225
UNIPROTKB\|E1BMM0		790	NCBP1 "Uncharacterized protein	0.967	0.974	0.531	8.3e-225
UNIPROTKB\|F1P0M6		796	NCBP1 "Nuclear cap-binding pro	0.992	0.992	0.516	3.3e-221
UNIPROTKB\|Q4R440		723	Q4R440 "Testis cDNA clone: Qts	0.900	0.991	0.528	1.5e-209

FB\|FBgn0022942 Cbp80 "cap binding protein 80" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 2616 (925.9 bits), Expect = 4.5e-272, P = 4.5e-272
 Identities = 506/804 (62%), Positives = 603/804 (75%)

Query:     3 NRRRPHE-EDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLE 61
             +RRR H+ ED+GY+    KRRRV ENQE+EDR E LI++VGERST+S+ES+L+GL  VLE
Sbjct:     2 SRRRAHDTEDEGYDHRRNKRRRVSENQEIEDRLESLILRVGERSTSSVESNLEGLVSVLE 61

Query:    62 TDLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKN 121
              DL T+R+KILRIL+DCA + PEKC +YTTLVGLLNAKNY FGGEFV+ MVKTFK++LK 
Sbjct:    62 ADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLKM 121

Query:   122 CQWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLP 181
             C+W+AARY+LRFLADLVNCHVIS  SLLQLL+ M+D S ED VP VR+DW+V+AVLS LP
Sbjct:   122 CRWDAARYSLRFLADLVNCHVISATSLLQLLDTMIDVSNEDTVPQVRRDWFVFAVLSTLP 181

Query:   182 WVGRXXXXXXXXXXXXXXXXXXXXXXKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVK 241
             WVGR                      KRSKKH  AL+VWSSD PHPQEEYLDCLWAQI K
Sbjct:   182 WVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSDAPHPQEEYLDCLWAQIRK 241

Query:   242 LRQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCP 301
             LRQDNW + HI RPY VFDS L  ALQHNLP I+ PPHHD+  YPMP VV+RMFDYTDCP
Sbjct:   242 LRQDNWAEKHIPRPYLVFDSILCEALQHNLPTIVPPPHHDNFEYPMPWVVYRMFDYTDCP 301

Query:   302 EEPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLK--YNMKIPLEYCIVEII 359
             + P+   LPGAHSIERFLIEEHL  IIE  + ERKDCA QLL   Y  KIPLEYCIVE++
Sbjct:   302 DGPN---LPGAHSIERFLIEEHLHHIIETYHHERKDCAAQLLSFPYKHKIPLEYCIVEVV 358

Query:   360 FGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVA 419
             F ELF +PTP+YL+I YGS+LIELCK++P T+PQVLAQAT ILFMRI+SMNT+CFDRFV 
Sbjct:   359 FAELFHMPTPRYLDICYGSILIELCKLQPATLPQVLAQATEILFMRIDSMNTSCFDRFVN 418

Query:   420 WFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAP 479
             WF+YHLSNF+F WSW++W+S L LD EHP+PKFI EVL KC+RLSYHQRI E++P  +A 
Sbjct:   419 WFSYHLSNFKFTWSWDEWDSCLLLDGEHPRPKFIQEVLQKCLRLSYHQRITEMMPTTYAK 478

Query:   480 LLPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMD-EDG 538
             L+PL P P++KY  E   +LPG   A +L+ AI++K  +P E++ IL  IP+S    E+ 
Sbjct:   479 LIPLTPVPNYKYANEEAANLPGTTVAHQLVVAIRQK-CTPEEVVNILKDIPNSGYSGEEM 537

Query:   539 AD-PINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFEL 597
             +D   N LKIDVF Q LL LGSKSFSHSFAA+SKF+ V +  +  TEE+Q  +L ++FEL
Sbjct:   538 SDGSFNALKIDVFVQTLLNLGSKSFSHSFAAISKFHSVFRA-LAETEEAQICILHNIFEL 596

Query:   598 WHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVN 657
             W  HQQMM VLIDK+LK Q++ CS+VA WIFSKEM  EFTKLY+WEILHLTIKKM+K+V 
Sbjct:   597 WSSHQQMMVVLIDKLLKLQIVDCSAVATWIFSKEMTGEFTKLYLWEILHLTIKKMNKHVI 656

Query:   658 RVGKELLDAKERLKHVXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXAAQADQ 712
             ++  EL +AKE+L                                         AA  +Q
Sbjct:   657 KLNTELSEAKEKLAKADSSSSDSEDDSSHKRKKPITHADKPSEEVVERMEEKLEAANVNQ 716

Query:   713 KNLFLIIFQRFIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLE 772
             K LFLI+FQRFIMILSEHL+R DTDG D +T WY+WTIGRLQQV L HHEQVQKYSSTLE
Sbjct:   717 KRLFLIVFQRFIMILSEHLLRSDTDGRDPDTDWYRWTIGRLQQVFLMHHEQVQKYSSTLE 776

Query:   773 TLLFTQDLEPHILDVFHQFLALNA 796
             TLLFT DL+ HIL+VF QF+AL A
Sbjct:   777 TLLFTSDLDTHILEVFQQFVALRA 800

GO:0000339 "RNA cap binding" evidence=ISS

GO:0005846 "nuclear cap binding complex" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0003677 "DNA binding" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0035195 "gene silencing by miRNA" evidence=IMP

GO:0045071 "negative regulation of viral genome replication" evidence=IMP

GO:0030422 "production of siRNA involved in RNA interference" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB\|Q09161 NCBP1 "Nuclear cap-binding protein subunit 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PUP7 NCBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:1891840 Ncbp1 "nuclear cap binding protein subunit 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZJZ6 NCBP1 "Nuclear cap-binding protein subunit 1" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|1308973 Ncbp1 "nuclear cap binding protein subunit 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6DIE2 ncbp1 "Nuclear cap-binding protein subunit 1" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BMM0 NCBP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P0M6 NCBP1 "Nuclear cap-binding protein subunit 1" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4R440 Q4R440 "Testis cDNA clone: QtsA-12580, similar to human nuclear cap binding protein subunit 1, 80kDa (NCBP1)," [Macaca fascicularis (taxid:9541)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B4I0W6	NCBP1_DROSE	No assigned EC number	0.6670	0.9937	0.9887	N/A	N/A
B4L2J8	NCBP1_DROMO	No assigned EC number	0.6608	0.9937	0.9887	N/A	N/A
B4NC41	NCBP1_DROWI	No assigned EC number	0.6670	0.9937	0.9887	N/A	N/A
Q3UYV9	NCBP1_MOUSE	No assigned EC number	0.5487	0.9874	0.9949	yes	N/A
Q56A27	NCBP1_RAT	No assigned EC number	0.5487	0.9874	0.9949	yes	N/A
Q6GQ80	NBP1A_XENLA	No assigned EC number	0.5448	0.9824	0.9886	N/A	N/A
B4Q034	NCBP1_DROYA	No assigned EC number	0.6658	0.9937	0.9887	N/A	N/A
Q9SIU2	NCBP1_ARATH	No assigned EC number	0.2826	0.8630	0.8101	yes	N/A
B4GW22	NCBP1_DROPE	No assigned EC number	0.6596	0.9937	0.9887	N/A	N/A
C0H906	NCBP1_SALSA	No assigned EC number	0.54	0.9861	0.9861	N/A	N/A
Q09161	NCBP1_HUMAN	No assigned EC number	0.5513	0.9861	0.9936	yes	N/A
Q7K4N3	NCBP1_DROME	No assigned EC number	0.6683	0.9937	0.9887	yes	N/A
Q16UN6	NCBP1_AEDAE	No assigned EC number	0.6401	0.9912	0.9704	N/A	N/A
B4M7T6	NCBP1_DROVI	No assigned EC number	0.6422	0.9723	0.9885	N/A	N/A
Q6DIE2	NCBP1_XENTR	No assigned EC number	0.5509	0.9836	0.9898	yes	N/A
B4JM29	NCBP1_DROGR	No assigned EC number	0.6633	0.9937	0.9887	N/A	N/A
O01763	NCBP1_CAEEL	No assigned EC number	0.3736	0.9786	0.9761	yes	N/A
B3NU52	NCBP1_DROER	No assigned EC number	0.6645	0.9937	0.9887	N/A	N/A
Q6GQD0	NBP1B_XENLA	No assigned EC number	0.5473	0.9824	0.9886	N/A	N/A
Q5ZJZ6	NCBP1_CHICK	No assigned EC number	0.5544	0.9685	0.9722	yes	N/A
Q7PX35	NCBP1_ANOGA	No assigned EC number	0.6593	0.9849	0.9714	yes	N/A
B3MS75	NCBP1_DROAN	No assigned EC number	0.6633	0.9937	0.9887	N/A	N/A
Q29G82	NCBP1_DROPS	No assigned EC number	0.6596	0.9937	0.9887	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		796
pfam09088		189	pfam09088, MIF4G_like, MIF4G like	2e-71
pfam09090		250	pfam09090, MIF4G_like_2, MIF4G like	3e-57
smart00543		200	smart00543, MIF4G, Middle domain of eukaryotic ini	2e-26
pfam02854		198	pfam02854, MIF4G, MIF4G domain	4e-17

>gnl\|CDD\|149958 pfam09088, MIF4G_like, MIF4G like	Back alignment and domain information

 Score =  231 bits (592), Expect = 2e-71
 Identities = 80/188 (42%), Positives = 105/188 (55%), Gaps = 23/188 (12%)

Query: 310 PGAHSIERFLIEEHLLQIIEMNYFERKDCATQLL-----------------------KYN 346
           P A SI  FL  + L  II +  F RK+CA +LL                          
Sbjct: 1   PPASSIAAFLFRDILADIINLLEFNRKECARELLDLDCFFTRKTFAPRGTSVDKLLDPPE 60

Query: 347 MKIPLEYCIVEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRI 406
               LE  IVE I GELF+LPTP Y  I+Y S+LIELCK+ P  +  VL +A   L+ R+
Sbjct: 61  STWKLEDVIVETILGELFQLPTPPYKPIYYHSLLIELCKLAPAAIAPVLGRAIRFLYRRL 120

Query: 407 ESMNTACFDRFVAWFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYH 466
           +S++    DRFV WF++HLSNF F+W W +W   L+L   HP+  FI EV+ K +RLSY+
Sbjct: 121 DSLDLELIDRFVDWFSHHLSNFGFRWKWTEWVPDLELPDLHPRKVFIREVIEKEIRLSYY 180

Query: 467 QRIKEIVP 474
            RIKE +P
Sbjct: 181 DRIKETLP 188

Members of this family are involved in mediating U snRNA export from the nucleus. They adopt a highly helical structure, wherein the polypeptide chain forms a right-handed solenoid. At the tertiary level, the domain is composed of a superhelical arrangement of successive antiparallel pairs of helices. Length = 189

>gnl\|CDD\|220107 pfam09090, MIF4G_like_2, MIF4G like	Back alignment and domain information

>gnl\|CDD\|214713 smart00543, MIF4G, Middle domain of eukaryotic initiation factor 4G (eIF4G)	Back alignment and domain information

>gnl\|CDD\|217253 pfam02854, MIF4G, MIF4G domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		796
KOG1104\|consensus		759		100.0
PF09088		191	MIF4G_like: MIF4G like; InterPro: IPR015172 This e	100.0
PF09090		253	MIF4G_like_2: MIF4G like; InterPro: IPR015174 This	100.0
smart00543		200	MIF4G Middle domain of eukaryotic initiation facto	99.7
KOG2140\|consensus		739		99.68
PF02854		209	MIF4G: MIF4G domain; InterPro: IPR003890 This entr	99.58
KOG2141\|consensus		822		97.92
KOG2051\|consensus		1128		96.71
KOG2051\|consensus		1128		86.47

>KOG1104\|consensus	Back alignment and domain information

Probab=100.00  E-value=3.6e-189  Score=1581.09  Aligned_cols=755  Identities=53%  Similarity=0.906  Sum_probs=716.3

Q ss_pred             CCCCCCCCCCCCchhhhcccccCCCCchhHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q psy8413           1 MSNRRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLETDLATYRVKILRILTDCAT   80 (796)
Q Consensus         1 m~~rrR~~d~~d~~d~~~~kr~r~~~~~~~~~~l~~~I~~ige~~~~s~e~~l~~La~~l~~d~~~~~~~i~~~l~~~v~   80 (796)
                      || |||+.||+|++  ++.+|||.++.+++++||+++|+++||.+++++|+||++|+.+|.+|++++++.|++++..||.
T Consensus         1 ms-rRrr~d~edE~--y~~rr~r~~~~e~l~krl~~~i~~vg~~s~ss~e~~l~~l~~~l~~~~~~~~~~iL~~L~~ca~   77 (759)
T KOG1104|consen    1 MS-RRRRGDDEDEN--YDDRRRRISPAETLEKRLESLIREVGEPSGSSVEDNLENLVAVLEADLENFKSKILDILNTCAV   77 (759)
T ss_pred             CC-CCccCCccccc--cccccccCCcHHHHHHHHHHHHHhhcCCCCCcHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            44 55666655543  4667889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCchHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHhhcccccccChhhHHHHHHHHHHhhh
Q psy8413          81 KYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNCQWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASK  160 (796)
Q Consensus        81 e~P~K~p~yAtLVgllN~kn~~~g~~iv~~l~~~lq~~l~~~~w~~~kl~lrFLa~L~n~~Vi~~~sl~~ll~~ll~~a~  160 (796)
                      ++|+|+|+||||||++|+||++||+++|++++.++|+++++|+|++||.++|||++|+||+|+++++++++|++|++++.
T Consensus        78 ~lP~K~~~yaTLvgllN~kn~~fg~~~v~~~~~~~q~sl~~~~~n~ar~llrfL~dL~~~~vl~~~sli~l~esl~~~~~  157 (759)
T KOG1104|consen   78 YLPEKITAYATLVGLLNLKNFNFGGEFVEYMIEELQESLKSGNWNEARYLLRFLSDLSNCHVLQADSLINLFESLLDAAI  157 (759)
T ss_pred             HcccchhHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccchhhHHHHHHhhchhccHHhHHhhHHHHHHHHHHHHHHHhhcccccccccccccCCCCCChhhHHHHHHHHHH
Q psy8413         161 EDGVPNVRKDWYVYAVLSCLPWVGRELYEKKEQALALLLLNIELYLNKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIV  240 (796)
Q Consensus       161 e~~~~q~R~d~~vy~vL~~LP~~G~~L~e~~~~~l~~ll~~i~~yl~~r~~~~~~ll~~~~~~~~~~~~d~l~~L~~qi~  240 (796)
                      |+++||+|+|||+||+|++|||+|++|++++++++++|+..|+.|+++|+++|.+++++|+++.|++|+|||++||+||+
T Consensus       158 e~~~Pqvr~D~~v~~vLs~lPw~g~el~e~~~~~~e~ll~~ie~Yl~~R~~shi~lL~vw~~~~~~~qeeyle~L~~qI~  237 (759)
T KOG1104|consen  158 EENVPQVRRDYYVYCVLSSLPWFGRELNEKKPTEMEELLVYIEIYLKKRKKSHINLLNVWSGEPDHPQEEYLELLWAQIQ  237 (759)
T ss_pred             hhcCcchhhhHHHHHHHhccchhhhhhcccchHHHHHHHHHHHHHHHHhcccccchhhcCCCCCCchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCccccccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCCCCCCeeEEEeccCCCC-CCCCCCCCCCCCcchHHHH
Q psy8413         241 KLRQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDC-PEEPSISPLPGAHSIERFL  319 (796)
Q Consensus       241 ~l~~~~w~~~~i~rpy~~f~~~L~~a~~h~Lp~~~~p~~~~~~~y~~P~~~frlf~~~~~-~~~~~~~~lP~~~sier~l  319 (796)
                      ++++|+|++++|||||.+|+++|++|.+|+||+|..|+|+.++.||+|+++||+|++++| +++   +++||.+||||||
T Consensus       238 ~lr~n~w~e~hIprPy~~Fes~L~~~~~h~Lp~~~~pph~~~~~yp~p~v~fR~f~~~~~~~e~---p~mp~~ssi~rfl  314 (759)
T KOG1104|consen  238 KLRQNDWAENHIPRPYLGFESTLVHALQHNLPSFVSPPHTEDSEYPMPRVVFRMFQYTDCGFEI---PTMPGASSIERFL  314 (759)
T ss_pred             HHHhcCcccccCCCchhhHHHHHHHhcccCCCCCCCCCCcccccCCcchhhhhcccccccCCCC---CCCCCchhHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999 487   9999999999999


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHhcCC---CCCCchhHHHHHHHHHhhcCCCCCccchhHHHHHHHHhccCCCChhHHHH
Q psy8413         320 IEEHLLQIIEMNYFERKDCATQLLKYN---MKIPLEYCIVEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLA  396 (796)
Q Consensus       320 ~ee~i~Dii~~~~~nRkecA~~Ll~lp---~~~~~E~~ivEtIfs~lf~LP~p~~~~iyY~slLielCk~~P~~i~pv~~  396 (796)
                      |||+|+|||+.+++||||||+||++||   ..+|+||+|||||||+||+||+||+++|||||||+||||++|+++|||||
T Consensus       315 fe~~i~dii~sl~fnRKecA~~l~~l~~~f~~~p~eylivEtIfgell~LP~~~~~~iyy~slLiElCK~~P~~lpqV~a  394 (759)
T KOG1104|consen  315 FEEIILDIIESLEFNRKECARQLLSLPVKFKAIPIEYLIVETIFGELLRLPTPPYKTIYYTSLLIELCKLQPKALPQVLA  394 (759)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHcCcccccCccHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhCccchhHHHH
Confidence            999999999999999999999999999   45889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCccccHHHHHHHHHHHHHHhhccCCcccchhhhhhhcCCCCCChHHHHHHHHHHHHhhcchHHHhhhCccc
Q psy8413         397 QATVILFMRIESMNTACFDRFVAWFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQ  476 (796)
Q Consensus       397 ~Air~ly~~l~~mD~e~~~Rf~dWFS~hLSNF~F~W~W~eW~~~l~~~~~~Pk~~Fi~~~l~KeiRLSy~~rIk~~lPe~  476 (796)
                      ||+|+||+++++||++|++||+||||||||||||+|+|+||++|+++|.+|||++|+|++|+||+|||||+||+++||+-
T Consensus       395 qa~r~lY~rldsm~~~c~dR~idWFShHLSNF~F~w~W~eW~~~l~~d~~~pk~~FvreviqkelrLsy~~rI~dslP~~  474 (759)
T KOG1104|consen  395 QAVRILYMRLDSMDTECFDRFIDWFSHHLSNFQFRWKWNEWADCLGLDFEHPKPNFVREVIQKELRLSYYQRIKDSLPTL  474 (759)
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHhccCcceechhhhhhhcCCCCcCcchhHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCcccCCCCCCCCCchHHHHHHHHHHHhcCCCHHHHHHHHhhCCCCCCCCCCCCCCChhHHHHHHHHHHh
Q psy8413         477 FAPLLPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGADPINPLKIDVFTQVLLY  556 (796)
Q Consensus       477 ~~~llp~~p~p~fky~~e~~~~~p~~~~a~~l~~~i~~k~~~~eev~~~l~~i~~~~~~~~~~~~~~~~~i~v~~q~ll~  556 (796)
                      +..|+|++|+|+|+|++|+....|++..+.++..+++.|+ ++|++..+|++-     ++....++|.++|.+||||+++
T Consensus       475 ~~~l~P~~~~pny~y~~Ee~~~~~~~~~~~~l~~~~~~k~-~~e~~~~iLk~~-----~~~~~~~~n~~~i~lfvq~~l~  548 (759)
T KOG1104|consen  475 LAKLLPPPPLPNYKYTDEEDPVLPQSLVAVQLIVAFREKA-TAEEIVNILKSE-----DESEIGSFNRLKIILFVQTLLD  548 (759)
T ss_pred             HHHhCCCCCCCceeeecccCccccchHHHHHHHHHHhccC-CHHHHHHHHhcC-----ccccccCCcceehhhHHHHHHH
Confidence            9999999999999999999988899888999999999999 999999999921     1111156789999999999999


Q ss_pred             hccchHHhHHHHHHhHHHHHHhhhCCChHHHHHHHHHHHHHHhhCcCeeHHHHHHHHhCCCCChhhhhhhhcccCCcchh
Q psy8413         557 LGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEF  636 (796)
Q Consensus       557 ~GsKSfSH~~~~iery~~~Lk~l~~~~~~~q~~il~~v~~~W~~~~Q~~~iiidkll~~~iv~p~~Vv~w~F~~~~~~~~  636 (796)
                      +|||||||++++++||+++||+++.+++..|.++|++|++||++||||+++++|||++|+||+|.+||+|+|+++|..+|
T Consensus       549 lGSKSfSH~f~~lek~~~vfk~l~~~~e~~q~~vl~~vft~Wk~n~Qm~~v~~Dkml~~~ii~~~aVv~WiF~~~m~~~~  628 (759)
T KOG1104|consen  549 LGSKSFSHAFSALEKYHTVFKKLCEDSETKQIIVLEAVFTFWKANPQMGFVLTDKMLKYQIIDCSAVVRWIFSEEMVNEF  628 (759)
T ss_pred             hccchhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhcCchhhHHHHHHHhccccccHHHHHHHhcCHHhhhhH
Confidence            99999999999999999999999997887899999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHH
Q psy8413         637 TKLYVWEILHLTIKKMSKYVNRVGKELLDAKERLKHVSSESEEESDGEGGKKNEEKISEEVVEKIEEKLEAAQADQKNLF  716 (796)
Q Consensus       637 ~~~~~Weil~~ti~kv~~rv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~a~~eqk~l~  716 (796)
                      ++.|+||+||+|++|+++|+.+++++++++.+++..+.++...+++...  ..+++..++.+|...++++.+..++|..|
T Consensus       629 ~r~~~wEil~~al~K~~~~~~~~~k~ie~~~e~~~~~~~~~~d~~~~~~--~~~~~~~~e~~e~~~~~~E~~~~~~k~~~  706 (759)
T KOG1104|consen  629 TRLYLWEILHSALNKLNKHLNRSQKNIEEVTEKLETAEKSEIDLEDDLS--AERDEIKEENVEGDPEDLEDANLKEKWLF  706 (759)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccccchhhhhh--hhhhhhhHHHhccChhhhhhhhHHHHHHH
Confidence            9999999999999999999999999999999999776655532222111  22356667888888999999999999999


Q ss_pred             HHHHHHHHHHhcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhccC
Q psy8413         717 LIIFQRFIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQDLEPHILDVFHQFLALNA  796 (796)
Q Consensus       717 ~~i~~~fv~~Lse~~~~~~~~~~~~~~~W~~~~~gr~~~~~~~~~~~~~~~~~~L~~~~ft~~~d~~i~~vf~qf~al~~  796 (796)
                      ..+||+|+                           ++++.|..|++...+|+.++++.+||+|+||+|+++|+||+++++
T Consensus       707 ~~v~~k~~---------------------------~le~~f~~~~e~~~k~~~~i~~~~~te~l~psi~~~~~~f~~~~~  759 (759)
T KOG1104|consen  707 FVVFQKFI---------------------------ILEAYFLEHEELAQKYSSTIENLVFTEDLDPSISNVFQQFVALRA  759 (759)
T ss_pred             HHHhhhhH---------------------------HHHHHHHHHHHHHHHHHHHhhccccccccChHHHHHHHHHhhhcC
Confidence            99999998                           889999999999999999999999999999999999999999985

>PF09088 MIF4G_like: MIF4G like; InterPro: IPR015172 This entry represents an MIF4G-like domain	Back alignment and domain information

>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain	Back alignment and domain information

>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G)	Back alignment and domain information

>KOG2140\|consensus	Back alignment and domain information

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain	Back alignment and domain information

>KOG2141\|consensus	Back alignment and domain information

>KOG2051\|consensus	Back alignment and domain information

>KOG2051\|consensus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		796
1n52_A		790	Cap Binding Complex Length = 790		0.0
1h6k_A		757	Nuclear Cap Binding Complex Length = 757		0.0
1h2v_C		771	Structure Of The Human Nuclear Cap-Binding-Complex		0.0
1h2t_C		723	Structure Of The Human Nuclear Cap-Binding-Complex		0.0

>pdb|1N52|A Chain A, Cap Binding Complex Length = 790

Back alignment and structure

Iteration: 1

Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/798 (53%), Positives = 552/798 (69%), Gaps = 13/798 (1%) Query: 3 NRRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLET 62 +RRR +E+DG + KRR+ + E ED E LI KVGE+S SLES+L+GLA VLE Sbjct: 2 SRRRHSDENDGGQP--HKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEA 59 Query: 63 DLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNC 122 DL Y+ KILR+L A PEK IYTTLVGLLNA+NYNFGGEFVE M++ K++LK Sbjct: 60 DLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKAN 119 Query: 123 QWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPW 182 +N A Y +RFL+DLVNCHVI+ S++ + EN + ++E+ VP VR+DWYVYA LS LPW Sbjct: 120 NYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPW 179 Query: 183 VGRXXXXXXXXXXXXXXXXXXXXXXKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKL 242 VG+ +R K HV LQVW++DKPHPQEEYLDCLWAQI KL Sbjct: 180 VGKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKL 239 Query: 243 RQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPE 302 ++D W + HI RPY FDS L ALQHNLP PPH + +YPMP V+FRMFDYTD PE Sbjct: 240 KKDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPE 299 Query: 303 EPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKY--NMKIPLEYCIVEIIF 360 P +PG+HS+ERF+IEE+L II+ ++ ERK CA QL+ Y KIPL Y IVE+IF Sbjct: 300 GPV---MPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIF 356 Query: 361 GELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAW 420 ELF+LP P ++++ Y ++LIELCK++P ++PQVLAQAT +L+MR+++MNT C DRF+ W Sbjct: 357 AELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINW 416 Query: 421 FAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPL 480 F++HLSNFQF+WSWEDW L D E PKPKF+ EVL KC+RLSYHQRI +IVPP F+ L Sbjct: 417 FSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSAL 476 Query: 481 LPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGAD 540 P P +KY E LPG A L A K K ++ +EI +IL +P+ + D+D + Sbjct: 477 CPANPTCIYKYGDESSNSLPGHSVALCLAVAFKSKATN-DEIFSILKDVPNPNQDDDDDE 535 Query: 541 --PINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELW 598 NPLKI+VF Q LL+L +KSFSHSF+AL+KF++V K + ++E + +VL+ +FE+W Sbjct: 536 GFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKT-LAESDEGKLHVLRVMFEVW 594 Query: 599 HDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNR 658 +H QM+AVL+DKM++TQ++ C++VANWIFS E+ +FT+L+VWEILH TI+KM+K+V + Sbjct: 595 RNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLK 654 Query: 659 VGKELLDAKERLKHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQADQKNLFLI 718 + KEL +AKE+L +AQ++QKNLFL+ Sbjct: 655 IQKELEEAKEKL--ARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLV 712 Query: 719 IFQRFIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQ 778 IFQRFIMIL+EHLVRC+TDG T WYK I RLQQ+ L HH+ +Q+Y TLE LLFT Sbjct: 713 IFQRFIMILTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTA 772 Query: 779 DLEPHILDVFHQFLALNA 796 +L+PHIL VF QF AL A Sbjct: 773 ELDPHILAVFQQFCALQA 790

PyMOL of 1n52

>pdb|1H6K|A Chain A, Nuclear Cap Binding Complex Length = 757

Back alignment and structure

>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc) Length = 771

Back alignment and structure

>pdb|1H2T|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc) In Complex With A Cap Analogue M7gpppg Length = 723

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		796
1h2v_C		771	80 kDa nuclear CAP binding protein; CAP-binding-co	0.0
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A* Length = 771	Back alignment and structure

 Score =  771 bits (1991), Expect = 0.0
 Identities = 431/778 (55%), Positives = 568/778 (73%), Gaps = 11/778 (1%)

Query: 23  RVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLETDLATYRVKILRILTDCATKY 82
           +  +  E ED  E LI KVGE+S  SLES+L+GLA VLE DL  Y+ KILR+L   A   
Sbjct: 1   KTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLL 60

Query: 83  PEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNCQWNAARYALRFLADLVNCHV 142
           PEK  IYTTLVGLLNA+NYNFGGEFVE M++  K++LK   +N A Y +RFL+DLVNCHV
Sbjct: 61  PEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHV 120

Query: 143 ISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPWVGRELYEKKEQALALLLLNI 202
           I+  S++ + EN +  ++E+ VP VR+DWYVYA LS LPWVG+ELYEKK+  +  +  N 
Sbjct: 121 IAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANT 180

Query: 203 ELYLNKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKLRQDNWTDHHIYRPYTVFDSR 262
           E YL +R K HV  LQVW++DKPHPQEEYLDCLWAQI KL++D W + HI RPY  FDS 
Sbjct: 181 ESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSI 240

Query: 263 LSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPEEPSISPLPGAHSIERFLIEE 322
           L  ALQHNLP    PPH +  +YPMP V+FRMFDYTD PE P    +PG+HS+ERF+IEE
Sbjct: 241 LCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEGPV---MPGSHSVERFVIEE 297

Query: 323 HLLQIIEMNYFERKDCATQLLKYNMK--IPLEYCIVEIIFGELFRLPTPKYLEIFYGSVL 380
           +L  II+ ++ ERK CA QL+ Y  K  IPL Y IVE+IF ELF+LP P ++++ Y ++L
Sbjct: 298 NLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLL 357

Query: 381 IELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAWFAYHLSNFQFQWSWEDWESA 440
           IELCK++P ++PQVLAQAT +L+MR+++MNT C DRF+ WF++HLSNFQF+WSWEDW   
Sbjct: 358 IELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDC 417

Query: 441 LKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPLLPLKPEPHFKYNQEGGEHLP 500
           L  D E PKPKF+ EVL KC+RLSYHQRI +IVPP F+ L P  P   +KY  E    LP
Sbjct: 418 LSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPSNPTCIYKYGDESSNSLP 477

Query: 501 GFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGADPI--NPLKIDVFTQVLLYLG 558
           G   A  L  A K K  + +EI +IL  +P+ + D+D  +    NPLKI+VF Q LL+L 
Sbjct: 478 GHSVALCLAVAFKSKA-TNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLA 536

Query: 559 SKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQMMAVLIDKMLKTQLL 618
           +KSFSHSF+AL+KF++V K  +  ++E + +VL+ +FE+W +H QM+AVL+DKM++TQ++
Sbjct: 537 AKSFSHSFSALAKFHEVFK-TLAESDEGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIV 595

Query: 619 HCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNRVGKELLDAKERLKHVSSESE 678
            C++VANWIFS E+  +FT+L+VWEILH TI+KM+K+V ++ KEL +AKE+L        
Sbjct: 596 DCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRS 655

Query: 679 EESDGEGGKKNEEKISEEVVEKIEEKLEAAQADQKNLFLIIFQRFIMILSEHLVRCDTDG 738
           ++ D       ++ + EE +E+++EK+E+AQ++QKNLFL+IFQRFIMIL+EHLVRC+TDG
Sbjct: 656 DDDDRSS--DRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETDG 713

Query: 739 VDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQDLEPHILDVFHQFLALNA 796
               T WYK  I RLQQ+ L HH+ +Q+Y  TLE LLFT +L+PHIL VF QF AL A
Sbjct: 714 TSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQQFCALQA 771

PyMOL of 1h2v

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		796
1h2v_C		771	80 kDa nuclear CAP binding protein; CAP-binding-co	100.0
1hu3_A		260	EIF4GII; heat repeat, translation; 2.37A {Homo sap	99.02
2vso_E		284	Eukaryotic initiation factor 4F subunit P150; acet	98.91
3rk6_A		234	Polyadenylate-binding protein-interacting protein;	98.42
2i2o_A		224	EIF4G-like protein; protein structure initiative,	97.89
3uky_C		32	Nuclear CAP-binding protein complex subunit 1; arm	96.99
1uw4_B		248	UPF2, regulator of nonsense transcripts 2; nonsens	96.83
1ug3_A		339	EIF4GI, eukaryotic protein synthesis initiation fa	96.81
1paq_A		189	Translation initiation factor EIF-2B epsilon subun	95.88
3ul0_C		26	Nuclear CAP-binding protein subunit 1; arm repeat,	95.69
3d3m_A		168	Eukaryotic translation initiation factor 4 gamma 2	95.57
3l6a_A		364	Eukaryotic translation initiation factor 4 gamma;	95.3
3jui_A		182	Translation initiation factor EIF-2B subunit EPSI;	94.65
2iu1_A		208	EIF5, eukaryotic translation initiation factor 5;	89.1
2ful_A		177	EIF-5, eukaryotic translation initiation factor 5;	87.32

>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*	Back alignment and structure

Probab=100.00  E-value=3.7e-188  Score=1664.65  Aligned_cols=766  Identities=56%  Similarity=0.996  Sum_probs=709.2

Q ss_pred             CCCchhHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHhCCCCchHHHHHHHHHhccCccc
Q psy8413          24 VPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLETDLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNF  103 (796)
Q Consensus        24 ~~~~~~~~~~l~~~I~~ige~~~~s~e~~l~~La~~l~~d~~~~~~~i~~~l~~~v~e~P~K~p~yAtLVgllN~kn~~~  103 (796)
                      ++++.++.++|+++|+||||++++++++||++|+++|.++++++|+.|++++++||.++|+|+|+||||||++|+|+|+|
T Consensus         2 ~~~~~~~~~~l~~lI~rlge~~~~s~~~~l~~L~~~l~~~l~~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~pe~   81 (771)
T 1h2v_C            2 TSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNF   81 (771)
T ss_dssp             --------CHHHHHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHH
T ss_pred             CCCcccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHcCChhH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCChhhHHHHHHHHhhcccccccChhhHHHHHHHHHHhhhcCCCCccchhhHHHHHHhhchhc
Q psy8413         104 GGEFVELMVKTFKDALKNCQWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPWV  183 (796)
Q Consensus       104 g~~iv~~l~~~lq~~l~~~~w~~~kl~lrFLa~L~n~~Vi~~~sl~~ll~~ll~~a~e~~~~q~R~d~~vy~vL~~LP~~  183 (796)
                      |++++++++.+|++++++|+|++||+++||||||+||+|+++++++++|+.|+++++|+++||+|+||+|||+|.+|||+
T Consensus        82 G~~lv~~l~~~f~~~l~~~~~~~~k~~lrFLa~L~n~~Vv~~~~il~lL~~Ll~~~~e~~~~q~r~D~~v~~vL~~Lp~~  161 (771)
T 1h2v_C           82 GGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWV  161 (771)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCHHHHHHHHHHHHHGGGCSSCCHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHhccCCeecHHHHHHHHHHHHHhhhhcCCcccchhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHhHHhhHHHHHHHHHHHHHHHhhcccccccccccccCCCCCChhhHHHHHHHHHHHHHhCCccccccCCCcchhhhhh
Q psy8413         184 GRELYEKKEQALALLLLNIELYLNKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKLRQDNWTDHHIYRPYTVFDSRL  263 (796)
Q Consensus       184 G~~L~e~~~~~l~~ll~~i~~yl~~r~~~~~~ll~~~~~~~~~~~~d~l~~L~~qi~~l~~~~w~~~~i~rpy~~f~~~L  263 (796)
                      |++|++++++++++||++++.|+++|++.+++++++|+++.|++++++|++||+||+++++|||+++++||||..|++.|
T Consensus       162 G~~L~e~~~~~l~~lle~~~~yl~~r~~~~~~ll~~~~~~~~~~~~~~l~~L~~ql~~lr~~~w~~~~iprp~~~f~~~l  241 (771)
T 1h2v_C          162 GKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSIL  241 (771)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCCTTHHHHCSBCCCSSCCCCBHHHHHHHHHHHHHHTTTCCSCCCCGGGGGTTTC
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHhcCccchhhhhccccCCCCchhhHHHHHHHHHHHHHHCCCCCcCCCchhhhccccc
Confidence            99999999999999999999999999998999999999989999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCCCCCCCCCCCCCCCCCeeEEEeccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhccCHHHHHHHHh
Q psy8413         264 SVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPEEPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLL  343 (796)
Q Consensus       264 ~~a~~h~Lp~~~~p~~~~~~~y~~P~~~frlf~~~~~~~~~~~~~lP~~~sier~l~ee~i~Dii~~~~~nRkecA~~Ll  343 (796)
                      +++.+|+||++++|+|..+..||+|+++||+|+++++++|   +++|+.++|||+|+|++++|||++|++||||||++|+
T Consensus       242 ~d~~~H~lp~~~~p~~~~~~~yp~p~~~f~if~~~d~~e~---~~~p~~~~idr~l~re~ildIi~~~~~nrkecA~~Ll  318 (771)
T 1h2v_C          242 CEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEG---PVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLV  318 (771)
T ss_dssp             CGGGCBCCCCCCCCCCCTTCCCCCCCBCCCCCCGGGCTTS---SCCCCTTSHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccCCCCCCCCCCCcccccCCccceeeeccCCcccccc---ccCCCcchHHHHHHHHHHHHHHHHccCCHHHHHHHHh
Confidence            9999999999999999889999999999999999999887   8999999999999999999999999999999999999


Q ss_pred             cCC--CCCCchhHHHHHHHHHhhcCCCCCccchhHHHHHHHHhccCCCChhHHHHHHHHHHHhcCccccHHHHHHHHHHH
Q psy8413         344 KYN--MKIPLEYCIVEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAWF  421 (796)
Q Consensus       344 ~lp--~~~~~E~~ivEtIfs~lf~LP~p~~~~iyY~slLielCk~~P~~i~pv~~~Air~ly~~l~~mD~e~~~Rf~dWF  421 (796)
                      ++|  .++++||+|||||||+||+||+|+++.+|||+|++||||++|+++||+||+|||++|+++++||++|++||++||
T Consensus       319 ~l~~~~~~~~e~~iVE~i~~el~~LP~p~~~~iyY~sll~eLCkl~P~~~~~v~~~ai~~lY~~i~~md~e~~~Rf~dwF  398 (771)
T 1h2v_C          319 SYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWF  398 (771)
T ss_dssp             TCCCSSCCCHHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHHHHHSTTTHHHHHHHHHHHHHHTGGGBCHHHHHHHHHHH
T ss_pred             cCCCCCcccHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence            999  578999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccCCcccchhhhhhhcCCCCCChHHHHHHHHHHHHhhcchHHHhhhCcccccccCCCCCCCCcccCCCCCCCCCc
Q psy8413         422 AYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPLLPLKPEPHFKYNQEGGEHLPG  501 (796)
Q Consensus       422 S~hLSNF~F~W~W~eW~~~l~~~~~~Pk~~Fi~~~l~KeiRLSy~~rIk~~lPe~~~~llp~~p~p~fky~~e~~~~~p~  501 (796)
                      |||||||+|+|+|+||++|++++..|||++||+++|+||+||||++||+++||++|++|+|++|.|+|+|++|+++++|+
T Consensus       399 ShhLSNF~f~W~W~eW~~~~e~~~~~p~r~Fik~ll~k~~RLSy~~rIk~~lP~~~~~llp~~p~p~f~y~~e~~~~~p~  478 (771)
T 1h2v_C          399 SHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPSNPTCIYKYGDESSNSLPG  478 (771)
T ss_dssp             HHHHTTTTTCCCGGGGGGGTTSCTTSHHHHHHHHHHHHHHHTSCHHHHHTTSCGGGGGGSCCCCCCCCTTSTTSCTTSTT
T ss_pred             HHHHhcCCcCccHHHhHHhhcCCccCcHHHHHHHHHHHHHhhhhHHHHHHhCcHHHHhhCCCCCCCCceeCCccccCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHhhCCCCCCCCCCC--CCCChhHHHHHHHHHHhhccchHHhHHHHHHhHHHHHHhh
Q psy8413         502 FVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGA--DPINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEH  579 (796)
Q Consensus       502 ~~~a~~l~~~i~~k~~~~eev~~~l~~i~~~~~~~~~~--~~~~~~~i~v~~q~ll~~GsKSfSH~~~~iery~~~Lk~l  579 (796)
                      ++.|++|+++||+|+ +++||.++|++++++..+++++  .++|++++++|+||+|++|||||||++++|+||+++||++
T Consensus       479 ~~~a~~l~~~ir~k~-~~eei~~~l~~i~~~~~~~~~~~~~~~~~~~i~v~~q~ll~~GskS~SH~~~~lery~~~lk~l  557 (771)
T 1h2v_C          479 HSVALCLAVAFKSKA-TNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTL  557 (771)
T ss_dssp             HHHHHHHHHHHHTTC-CHHHHHHHGGGCC-------------CCHHHHHHHHHHHHHHSTTCHHHHHHHHHHTHHHHHHH
T ss_pred             hHHHHHHHHHHHccC-CHHHHHHHHHhchhcccccccccccccchHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999 9999999999999887655433  4678899999999999999999999999999999999999


Q ss_pred             hCCChHHHHHHHHHHHHHHhhCcCeeHHHHHHHHhCCCCChhhhhhhhcccCCcchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy8413         580 IGHTEESQSYVLKSLFELWHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNRV  659 (796)
Q Consensus       580 ~~~~~~~q~~il~~v~~~W~~~~Q~~~iiidkll~~~iv~p~~Vv~w~F~~~~~~~~~~~~~Weil~~ti~kv~~rv~~~  659 (796)
                      ++ ++++|.+||++|++||++||||+++++|||++|+||+|.+||+|+|+++|+++|+++|+||||++|++||++||+++
T Consensus       558 ~~-~~~~q~~il~~v~~~W~~~~q~~~ividkll~~~iv~p~~Vv~w~f~~~~~~~~~~~~~weil~~ti~kv~~rv~~~  636 (771)
T 1h2v_C          558 AE-SDEGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKI  636 (771)
T ss_dssp             TS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCHHHHHHHHTSGGGTTTTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cC-CHHHHHHHHHHHHHHHhcCCceEehHHHHHHhcCCCCHHHHHHHHcCchhhhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99 99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhccCCcccccCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCC
Q psy8413         660 GKELLDAKERLKHVSSESEEESDGEGGKKNEEKISEEVVEKIEEKLEAAQADQKNLFLIIFQRFIMILSEHLVRCDTDGV  739 (796)
Q Consensus       660 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~a~~eqk~l~~~i~~~fv~~Lse~~~~~~~~~~  739 (796)
                      +++++++|++++.+++++.++++++.  ++++++.++++|++|++|++++++||+||+.+||+|+++|++|+++|+++|+
T Consensus       637 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~~e~~l~~~~~~~k~l~~~~~~~fv~~l~~~~~~~~~~~~  714 (771)
T 1h2v_C          637 QKELEEAKEKLARQHKRRSDDDDRSS--DRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETDGT  714 (771)
T ss_dssp             HHHHHHC-------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhhhhhhhcccccc--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhccCC
Confidence            99999999999776555433222222  4567888899999999999999999999999999999999999999999999


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhccC
Q psy8413         740 DFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQDLEPHILDVFHQFLALNA  796 (796)
Q Consensus       740 ~~~~~W~~~~~gr~~~~~~~~~~~~~~~~~~L~~~~ft~~~d~~i~~vf~qf~al~~  796 (796)
                      |++|+||+|++||||||+|+|+++|++|++||++++||+|+||+|++||+||+||||
T Consensus       715 ~~~~~W~~~~~gr~~~~~~~~~~~~~~~~~~l~~~~f~~~~d~~i~~v~~~f~~l~~  771 (771)
T 1h2v_C          715 SVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQQFCALQA  771 (771)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHTHHHHGGGHHHHHHHTSCTTSCHHHHHHHHHHHHTTC
T ss_pred             CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999999999996

PyMOL of 1h2v

>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14	Back alignment and structure

>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*	Back alignment and structure

>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}	Back alignment and structure

>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}	Back alignment and structure

>3uky_C Nuclear CAP-binding protein complex subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding; 2.35A {Saccharomyces cerevisiae}	Back alignment and structure

>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14	Back alignment and structure

>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14	Back alignment and structure

>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14	Back alignment and structure

>3ul0_C Nuclear CAP-binding protein subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 2.00A {Mus musculus} PDB: 3ukz_C	Back alignment and structure

>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}	Back alignment and structure

>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}	Back alignment and structure

>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0	Back alignment and structure

>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}	Back alignment and structure

>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		796
d1h2vc3		310	a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-bi	1e-112
d1h2vc1		262	a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-bin	2e-92
d1h2vc2		190	a.118.1.14 (C:291-480) CBP80, 80KDa nuclear cap-bi	7e-89

>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 310	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: CBP80, 80KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  341 bits (877), Expect = e-112
 Identities = 157/314 (50%), Positives = 222/314 (70%), Gaps = 6/314 (1%)

Query: 485 PEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGADPI-- 542
           P   +KY  E    LPG   A  L  A K K +  +EI +IL  +P+ + D+D  +    
Sbjct: 1   PTCIYKYGDESSNSLPGHSVALCLAVAFKSKAT-NDEIFSILKDVPNPNQDDDDDEGFSF 59

Query: 543 NPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQ 602
           NPLKI+VF Q LL+L +KSFSHSF+AL+KF++V K  +  ++E + +VL+ +FE+W +H 
Sbjct: 60  NPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFK-TLAESDEGKLHVLRVMFEVWRNHP 118

Query: 603 QMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNRVGKE 662
           QM+AVL+DKM++TQ++ C++VANWIFS E+  +FT+L+VWEILH TI+KM+K+V ++ KE
Sbjct: 119 QMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKE 178

Query: 663 LLDAKERLKHVSSESEEESDGEGGKKNEEKISEEVVEKIEEKLEAAQADQKNLFLIIFQR 722
           L +AKE+L           D +     ++ + EE +E+++EK+E+AQ++QKNLFL+IFQR
Sbjct: 179 LEEAKEKLA--RQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQR 236

Query: 723 FIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQDLEP 782
           FIMIL+EHLVRC+TDG    T WYK  I RLQQ+ L HH+ +Q+Y  TLE LLFT +L+P
Sbjct: 237 FIMILTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDP 296

Query: 783 HILDVFHQFLALNA 796
           HIL VF QF AL A
Sbjct: 297 HILAVFQQFCALQA 310

PyMOL of d1h2vc3

>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 262	Back information, alignment and structure

>d1h2vc2 a.118.1.14 (C:291-480) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 190	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		796
d1h2vc3		310	CBP80, 80KDa nuclear cap-binding protein {Human (H	100.0
d1h2vc2		190	CBP80, 80KDa nuclear cap-binding protein {Human (H	100.0
d1h2vc1		262	CBP80, 80KDa nuclear cap-binding protein {Human (H	100.0
d1hu3a_		243	Eukaryotic initiation factor eIF4G {Human (Homo sa	98.78
d1uw4b_		248	Regulator of nonsense transcripts 2, UPF2 {Human (	98.69
d1ug3a2		127	Eukaryotic initiation factor eIF4G {Human (Homo sa	97.99
d1paqa_		161	Translation initiation factor eIF-2b epsilon {Bake	91.71

>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: CBP80, 80KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-76  Score=627.67  Aligned_cols=308  Identities=51%  Similarity=0.862  Sum_probs=265.0

Q ss_pred             CCCCcccCCCCCCCCCchHHHHHHHHHHHhcCCCHHHHHHHHhhCCCCCCCCCCC--CCCChhHHHHHHHHHHhhccchH
Q psy8413         485 PEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGA--DPINPLKIDVFTQVLLYLGSKSF  562 (796)
Q Consensus       485 p~p~fky~~e~~~~~p~~~~a~~l~~~i~~k~~~~eev~~~l~~i~~~~~~~~~~--~~~~~~~i~v~~q~ll~~GsKSf  562 (796)
                      |.|.|||++|+++++|+++.|++|+++||+|+ ++|||+++|++++++.++++++  .++++++++||+||+|++|||||
T Consensus         1 p~~~fky~~e~~~~~P~~~~a~~L~~~ir~K~-~~eei~~~l~~i~~~~~~~~~~~~~~~~~~~i~vfvqtll~~GSKSf   79 (310)
T d1h2vc3           1 PTCIYKYGDESSNSLPGHSVALCLAVAFKSKA-TNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLAAKSF   79 (310)
T ss_dssp             CCCCCTTSTTSCTTSTTHHHHHHHHHHHHTTC-CHHHHHHHGGGCC-------------CCHHHHHHHHHHHHHHSTTCH
T ss_pred             CCCccccCCcCCCCCChHHHHHHHHHHHHccC-CHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHccchH
Confidence            78999999999989999999999999999999 9999999999999987765433  56888999999999999999999


Q ss_pred             HhHHHHHHhHHHHHHhhhCCChHHHHHHHHHHHHHHhhCcCeeHHHHHHHHhCCCCChhhhhhhhcccCCcchhhhhhHH
Q psy8413         563 SHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVW  642 (796)
Q Consensus       563 SH~~~~iery~~~Lk~l~~~~~~~q~~il~~v~~~W~~~~Q~~~iiidkll~~~iv~p~~Vv~w~F~~~~~~~~~~~~~W  642 (796)
                      ||++++|+||+++||++++ ++++|.+||++|++||++||||+++++|||++|+||+|.+||+|+|+++|.++|+++|+|
T Consensus        80 SH~~~~lery~~~lk~l~~-~~~~q~~il~~v~~~W~~~~q~~~v~~dkll~~~ii~~~aVv~W~fs~~~~~~~~~~~~w  158 (310)
T d1h2vc3          80 SHSFSALAKFHEVFKTLAE-SDEGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVW  158 (310)
T ss_dssp             HHHHHHHHHTHHHHHHHTS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCHHHHHHHHTSGGGTTTTTSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHcCCcChHHHHHHhcChhhhhHHhhhhHH
Confidence            9999999999999999999 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8413         643 EILHLTIKKMSKYVNRVGKELLDAKERLKHVSSESEEESDGEGGKKNEEKISEEVVEKIEEKLEAAQADQKNLFLIIFQR  722 (796)
Q Consensus       643 eil~~ti~kv~~rv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~a~~eqk~l~~~i~~~  722 (796)
                      |+|++|++||++|++++++++++++++++...+++.++.+...  ++.+++.++++|+++++|++++.|||+||+.|||+
T Consensus       159 E~l~~tl~kv~~rv~~~~~ele~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~e~~~~~Le~a~~eqk~Lfl~i~q~  236 (310)
T d1h2vc3         159 EILHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRSDDDDRSS--DRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQR  236 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc--ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999776555433222222  34456778899999999999999999999999999


Q ss_pred             HHHHhcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhccC
Q psy8413         723 FIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQDLEPHILDVFHQFLALNA  796 (796)
Q Consensus       723 fv~~Lse~~~~~~~~~~~~~~~W~~~~~gr~~~~~~~~~~~~~~~~~~L~~~~ft~~~d~~i~~vf~qf~al~~  796 (796)
                      |+++|++|+++|+++|++++++||+|++||||+|||+|++++++|+++||+++||+|+||+|++||+||+||||
T Consensus       237 Fv~iLse~l~~~e~~~~~~~~~W~~~~~grlk~~~~~y~~~~~~~~~~Le~~~ft~~~dp~il~vf~qf~aL~~  310 (310)
T d1h2vc3         237 FIMILTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQQFCALQA  310 (310)
T ss_dssp             HHHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHTHHHHGGGHHHHHHHTSCTTSCHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhhccccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997

PyMOL of d1h2vc3

>d1h2vc2 a.118.1.14 (C:291-480) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure