Psyllid ID: psy8436

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300------
Protein Sequence
MEKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEKSQTSNCSKIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKLS
Secondary Structure (PSIPRED)
cccccEEEEEEEcccccccEEEEccccccccccEEEEEEccccHHHHccccccccEEEEEccEEcccccHHHHHHHHHHccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccEEEEcccccccccccEEEEEEccccHHHHccccccccEEEEEccEEcccccHHHHHHHHHccccccEEEc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEcccccEEEEEEcccccccccEEEEEEEccccccccccccccccEEEEEcccccccccHHHHHHHHHHcccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccEEEEEcccccccccccEEEEEEccccccccccccccccEEEEEcccccccccHHHHHHHHHHcccccEEEc
Coil and Loop (DISEMBL)
MEKQFKVFRVVkddsnelgiyierqdggahfspylishiepggaihrdgrfhvgDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVIcrnpddaksatncdnlqpnpknlpkkniiINQRQKNivekslmperqvsmpeiernkTEVIATTQvsneksqtsnCSKIRNKVtgmrkfscqfdgisprrrqsvvdhnrsnvaatpnnsnatvkrpkslsLSMFTVTfqkgpgqkslgfsivggrdspkgnlGIFVKTIFQSgqaaeneklregdeiiaingvplenkTHAEAIAMFKdifpqsskls
Flexible Loop (DISEMBL)
mekqfkvfrvvkddsnelGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEARealnnkdshveIVICRNpddaksatncdnlqpnpknlpkkniiinqrqknivekslmperqvsmpeiernkteviattqvsneksqtsncskirnkvtgmrkfscqfdgisprrrqsvvdhnrsnvaatpnnsnatvkrpkSLSLSMFTVTfqkgpgqkslGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKLS
Low Complexity Region (SEG)
MEKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLPkkniiinqrqkniVEKSLMPERQVSMPEIERNKTEVIATTQVSNEKSQTSNCSKIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKLS
Disordered region (IsUnstruct)
*****KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICR***********************************************************************************************************************************FTVTF********LGFSIVGGRDSPKGNLGIFVKTIFQSG**********GDEIIAINGVPLENKTHAEAIAMFKDI********
Disordered Region (DISOPRED)
*EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVI**********************************************************************************************************************************LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQ***L*
Disordered Region (DISEMBL)
MEKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKSLMPERQVSMPEIERNKTEVIATT************SKIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKLS
Disordered Region (DISPRO)
MEKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNP*****************************************************************************************************************************SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKLS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEKSQTSNCSKIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	306	2.2.26 [Sep-21-2011]
O15018	2839	PDZ domain-containing pro	yes	N/A	0.895	0.096	0.295	2e-24
Q9QZR8	2766	PDZ domain-containing pro	yes	N/A	0.849	0.093	0.318	9e-24
O55164	2054	Multiple PDZ domain prote	no	N/A	0.235	0.035	0.554	2e-16
Q8VBX6	2055	Multiple PDZ domain prote	no	N/A	0.235	0.035	0.554	2e-16
O75970	2070	Multiple PDZ domain prote	no	N/A	0.235	0.034	0.527	8e-16
Q8NI35	1801	InaD-like protein OS=Homo	no	N/A	0.872	0.148	0.252	2e-14
Q63ZW7	1834	InaD-like protein OS=Mus	no	N/A	0.937	0.156	0.248	4e-14
Q91XM9	852	Disks large homolog 2 OS=	no	N/A	0.781	0.280	0.254	2e-11
Q63622	852	Disks large homolog 2 OS=	no	N/A	0.781	0.280	0.254	3e-11
Q15700	870	Disks large homolog 2 OS=	no	N/A	0.797	0.280	0.258	3e-11

>sp|O15018|PDZD2_HUMAN PDZ domain-containing protein 2 OS=Homo sapiens GN=PDZD2 PE=1 SV=4

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 157/332 (47%), Gaps = 58/332 (17%)

Query: 14  DSNELGIYIERQDGGAHFSPY--LISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQ 71
           +S+ LGI +    G +  SP+  +++ ++ GGA HRDGR  +GDEL+ +N   L GL+ +
Sbjct: 340 ESDGLGIQVSGGRG-SKRSPHAIVVTQVKEGGAAHRDGRLSLGDELLVINGHLLVGLSHE 398

Query: 72  EAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIII----------NQR 121
           EA   L +    V++V+    + A+     D L+   K+LP     +          +Q 
Sbjct: 399 EAVAILRSATGMVQLVVASKENSAE-----DLLRLTSKSLPDLTSSVEDVSSWTDNEDQE 453

Query: 122 QKNIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEKS--QTSNCSKIRNKVTGM----- 174
                ++      Q +MP  +  +    A     N +S  Q SN  K++++++G      
Sbjct: 454 ADGEEDEGTSSSVQRAMPGTDEPQDVCGAEESKGNLESPKQGSNKIKLKSRLSGGVHRLE 513

Query: 175 --------------------------RKFSCQ--FDGISPRRRQSVVDHNRSNVAATPNN 206
                                     RK S     D  S  +   +V  +  +++ T   
Sbjct: 514 SVEEYNELMVRNGDPRIRMLEVSRDGRKHSLPQLLDSSSASQEYHIVKKSTRSLSTTQVE 573

Query: 207 SNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAEN 266
           S   + RP  +S+    +  +KG   K LGFSI GGRD  +G +GIFVKTIF +G AAE+
Sbjct: 574 SPWRLIRPSVISI--IGLYKEKG---KGLGFSIAGGRDCIRGQMGIFVKTIFPNGSAAED 628

Query: 267 EKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
            +L+EGDEI+ +NG+P++  T  EAI  FK I
Sbjct: 629 GRLKEGDEILDVNGIPIKGLTFQEAIHTFKQI 660

Homo sapiens (taxid: 9606)

>sp|Q9QZR8|PDZD2_RAT PDZ domain-containing protein 2 OS=Rattus norvegicus GN=Pdzd2 PE=1 SV=1

 Score =  110 bits (276), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 94/295 (31%), Positives = 148/295 (50%), Gaps = 35/295 (11%)

Query: 14  DSNELGIYIERQDGGAHFSPY--LISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQ 71
           +S+ LGI +    G +  SP+  +++ ++ GGA HRDGR  +GDEL+ +N   L GL+ +
Sbjct: 340 ESDGLGIQVSGGRG-SKRSPHAIVVTQVKEGGAAHRDGRLSLGDELLVINGHLLVGLSHE 398

Query: 72  EAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNL--PKKNIIINQRQKNIVEKS 129
           EA   L +    V++V+      ++ + +  + + +  NL  PK+    N + K     S
Sbjct: 399 EAVAILRSATGMVQLVVASKMPGSEESQDVGSSEESKGNLESPKQG---NCKTKLKSRLS 455

Query: 130 LMPERQVSMPE----IERNKTEVIATTQVSNEKSQTSNCSKIRNKVTGMRKFSCQ--FDG 183
               R  S+ E    + RN    I   +VS +                 RK S     D 
Sbjct: 456 GGVHRLESVEEYNELMVRNGDPRIRMLEVSRDG----------------RKHSLPQLLDS 499

Query: 184 ISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGR 243
               +   +V  +  +++ T   S   + RP  +S+    +  +KG   K LGFSI GGR
Sbjct: 500 TGTSQEYHIVKKSTRSLSTTHVESPWRLIRPSVISI--IGLYKEKG---KGLGFSIAGGR 554

Query: 244 DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
           D  +G +GIFVKTIF +G AAE+ +L+EGDEI+ +NG+P++  T  EAI  FK I
Sbjct: 555 DCIRGQMGIFVKTIFPNGSAAEDGRLKEGDEILDVNGIPIKGLTFQEAIHTFKQI 609

Rattus norvegicus (taxid: 10116)

>sp|O55164|MPDZ_RAT Multiple PDZ domain protein OS=Rattus norvegicus GN=Mpdz PE=1 SV=1

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 53/74 (71%), Gaps = 2/74 (2%)

Query: 223  TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            T+T  +GP    LGFSIVGG  SP G+L I+VKT+F  G AAE+ +L+ GD+IIA+NG  
Sbjct: 1971 TITLDRGP--DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAAAEDGRLKRGDQIIAVNGQS 2028

Query: 283  LENKTHAEAIAMFK 296
            LE  TH EA+A+ K
Sbjct: 2029 LEGVTHEEAVAILK 2042

Interacts with HTR2C and provokes its clustering at the cell surface. Member of the NMDAR signaling complex that may play a role in control of AMPAR potentiation and synaptic plasticity in excitatory synapses.

Rattus norvegicus (taxid: 10116)

>sp|Q8VBX6|MPDZ_MOUSE Multiple PDZ domain protein OS=Mus musculus GN=Mpdz PE=1 SV=2

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 53/74 (71%), Gaps = 2/74 (2%)

Query: 223  TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            T+T  +GP    LGFSIVGG  SP G+L I+VKT+F  G AAE+ +L+ GD+IIA+NG  
Sbjct: 1972 TITLDRGP--DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAAAEDGRLKRGDQIIAVNGQS 2029

Query: 283  LENKTHAEAIAMFK 296
            LE  TH EA+A+ K
Sbjct: 2030 LEGVTHEEAVAILK 2043

Interacts with HTR2C and provokes its clustering at the cell surface. Member of the NMDAR signaling complex that may play a role in control of AMPAR potentiation and synaptic plasticity in excitatory synapses.

Mus musculus (taxid: 10090)

>sp|O75970|MPDZ_HUMAN Multiple PDZ domain protein OS=Homo sapiens GN=MPDZ PE=1 SV=2

 Score = 84.7 bits (208), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 54/74 (72%), Gaps = 2/74 (2%)

Query: 223  TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            ++T ++GP    LGFSIVGG  SP G+L I+VKT+F  G A+E+ +L+ GD+IIA+NG  
Sbjct: 1987 SITLERGP--DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQS 2044

Query: 283  LENKTHAEAIAMFK 296
            LE  TH EA+A+ K
Sbjct: 2045 LEGVTHEEAVAILK 2058

Interacts with HTR2C and provokes its clustering at the cell surface (By similarity). Member of the NMDAR signaling complex that may play a role in control of AMPAR potentiation and synaptic plasticity in excitatory synapses.

Homo sapiens (taxid: 9606)

>sp|Q8NI35|INADL_HUMAN InaD-like protein OS=Homo sapiens GN=INADL PE=1 SV=3

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 134/301 (44%), Gaps = 34/301 (11%)

Query: 11   VKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
            ++ D N LG+ +      +  S +++  I P G    DGR  +GDEL+++N++ L G + 
Sbjct: 1242 LEKDKNGLGLSLAGNKDRSRMSIFVVG-INPEGPAAADGRMRIGDELLEINNQILYGRSH 1300

Query: 71   QEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKSL 130
            Q A   +    S V++V  RN D    A N   + P P      + I +Q     +    
Sbjct: 1301 QNASAIIKTAPSKVKLVFIRNED----AVNQMAVTPFPVPSSSPSSIEDQSGTEPISSEE 1356

Query: 131  MPERQVSMPEIERNKTEVIATTQVSNEKSQTSNCSKIRNKVTGMRKFSCQFDGISPRRRQ 190
                +V + ++  +++  +A +Q+  +K  T        KV+    FS Q   ++P    
Sbjct: 1357 DGSVEVGIKQLPESESFKLAVSQMKQQKYPT--------KVS----FSSQEIPLAPASSY 1404

Query: 191  SVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVT------FQKGPGQKSLGFSIVGGRD 244
               D + +             + P S+  +   +        +   G+  LG SIVGG+D
Sbjct: 1405 HSTDADFTGYGG--------FQAPLSVDPATCPIVPGQEMIIEISKGRSGLGLSIVGGKD 1456

Query: 245  SPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSK 304
            +P     I +  +++ G AA + +L  GD+I+ +NGV L N +H EAI   +   PQ  +
Sbjct: 1457 TPLN--AIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQT-PQKVR 1513

Query: 305  L 305
            L
Sbjct: 1514 L 1514

Scaffolding protein that may bring different proteins into adjacent positions at the cell membrane. May regulate protein targeting, cell polarity and integrity of tight junctions. May regulate the surface expression and/or function of ASIC3 in sensory neurons.

Homo sapiens (taxid: 9606)

>sp|Q63ZW7|INADL_MOUSE InaD-like protein OS=Mus musculus GN=Inadl PE=1 SV=2

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 140/310 (45%), Gaps = 23/310 (7%)

Query: 11   VKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
            ++ D N LG+ +      +  S +++  I P G    DGR  +GDEL+++N++ L G + 
Sbjct: 1248 LEKDKNGLGLSLAGNKDRSRMSIFVVG-INPEGPAAADGRMRIGDELLEINNQILYGRSH 1306

Query: 71   QEAREALNNKDSHVEIVICRNPDDAKSATNCDNL-----QPNPKNLPKKNIIINQRQKNI 125
            Q A   +    + V++V  RN +DA S             P+P        +++  +++ 
Sbjct: 1307 QNASAIIKTAPTRVKLVFIRN-EDAVSQMAVAPFPELSHSPSPVEDLGGTELVSSEEESS 1365

Query: 126  VEKSLMPERQVSMPEIERNKTEVIATTQVSNEK--SQTSNCSKIRNKVTGMRKFSCQFDG 183
            V+   +PE + S PE   + ++V+    V+ ++  S++ + +  + K             
Sbjct: 1366 VDAKHLPEPESSKPE---DLSQVVDDNMVAEQQKESESPDSAACQIKQQTYSTQVSSSSQ 1422

Query: 184  ISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKG--------PGQKSL 235
             SP     +     ++V  + N        P  LS+   T     G         G+  L
Sbjct: 1423 DSPSSPAPLCQSAHADVTGSGNFQAPLPVDPAPLSVDPATCPIVPGQEMIIEISKGRSGL 1482

Query: 236  GFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMF 295
            G SIVGG+D+P     I +  +++ G AA + +L  GD+I+ +NGV L + +H EAI   
Sbjct: 1483 GLSIVGGKDTPLD--AIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRSSSHEEAITAL 1540

Query: 296  KDIFPQSSKL 305
            +   PQ  +L
Sbjct: 1541 RQT-PQKVRL 1549

Scaffolding protein that may bring different proteins into adjacent positions at the cell membrane. May regulate protein targeting, cell polarity and integrity of tight junctions. May regulate the surface expression and/or function of ASIC3 in sensory neurons.

Mus musculus (taxid: 10090)

>sp|Q91XM9|DLG2_MOUSE Disks large homolog 2 OS=Mus musculus GN=Dlg2 PE=1 SV=2

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 121/287 (42%), Gaps = 48/287 (16%)

Query: 36  ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDA 95
           ++ I  GGA  +DGR  VGD L+ VN+  L+ +T +EA   L N    V + + +     
Sbjct: 224 VTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSDVVYLKVGK----P 279

Query: 96  KSATNCDNLQP----NPKNLPKKNIIINQRQKNIVEKSLMPERQVSMPEIERNKTEVIAT 151
            +    D   P    +  + P +N +++     +       E + S+P I   +   I  
Sbjct: 280 TTIYMTDPYGPPDITHSYSPPMENHLLSGNNGTL-------EYKTSLPPISPGRYSPIPK 332

Query: 152 TQVSNEKSQTSNCSKIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPN------ 205
             +  E   T     + + V  +    C  D  +  R  S V+ ++S + +TP       
Sbjct: 333 HML-GEDDYTRPPEPVYSTVNKL----C--DKPASPRHYSPVECDKSFLLSTPYPHYHLG 385

Query: 206 ---NSNATVKRPKSLSLSMFTVTFQKG-------------PGQKSLGFSIVGGRDSPKGN 249
              +S+ T     S +    +VT Q+               G   LGF+IVGG D     
Sbjct: 386 LLPDSDMTSHSQHSTATRQPSVTLQRAISLEGEPRKVVLHKGSTGLGFNIVGGEDGE--- 442

Query: 250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
            GIFV  I   G A  + +L+ GD+I+++NG+ L   +H +A A  K
Sbjct: 443 -GIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALK 488

Required for perception of chronic pain through NMDA receptor signaling. Regulates surface expression of NMDA receptors in dorsal horn neurons of the spinal cord. Interacts with the cytoplasmic tail of NMDA receptor subunits as well as inward rectifying potassium channels. Involved in regulation of synaptic stability at cholinergic synapses. Part of the postsynaptic protein scaffold of excitatory synapses.

Mus musculus (taxid: 10090)

>sp|Q63622|DLG2_RAT Disks large homolog 2 OS=Rattus norvegicus GN=Dlg2 PE=1 SV=1

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 121/287 (42%), Gaps = 48/287 (16%)

Query: 36  ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDA 95
           ++ I  GGA  +DGR  VGD L+ VN+  L+ +T +EA   L N    V + + +     
Sbjct: 224 VTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSDVVYLKVGK----P 279

Query: 96  KSATNCDNLQP----NPKNLPKKNIIINQRQKNIVEKSLMPERQVSMPEIERNKTEVIAT 151
            +    D   P    +  + P +N +++     +       E + S+P I   +   I  
Sbjct: 280 TTIYMTDPYGPPDITHSYSPPMENHLLSGNNGTL-------EYKTSLPPISPGRYSPIPK 332

Query: 152 TQVSNEKSQTSNCSKIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPN------ 205
             +  E   T     + + V  +    C  D  +  R  S V+ ++S + +TP       
Sbjct: 333 HMLV-EDDYTRPPEPVYSTVNKL----C--DKPASPRHYSPVECDKSFLLSTPYPHYHLG 385

Query: 206 ---NSNATVKRPKSLSLSMFTVTFQKG-------------PGQKSLGFSIVGGRDSPKGN 249
              +S+ T     S +    +VT Q+               G   LGF+IVGG D     
Sbjct: 386 LLPDSDMTSHSQHSTATRQPSVTLQRAISLEGEPRKVVLHKGSTGLGFNIVGGEDGE--- 442

Query: 250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
            GIFV  I   G A  + +L+ GD+I+++NG+ L   +H +A A  K
Sbjct: 443 -GIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALK 488

Required for perception of chronic pain through NMDA receptor signaling. Regulates surface expression of NMDA receptors in dorsal horn neurons of the spinal cord. Interacts with the cytoplasmic tail of NMDA receptor subunits as well as inward rectifying potassium channels. Involved in regulation of synaptic stability at cholinergic synapses. Part of the postsynaptic protein scaffold of excitatory synapses.

Rattus norvegicus (taxid: 10116)

>sp|Q15700|DLG2_HUMAN Disks large homolog 2 OS=Homo sapiens GN=DLG2 PE=1 SV=3

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 120/282 (42%), Gaps = 38/282 (13%)

Query: 36  ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDA 95
           ++ I  GGA  +DGR  VGD L+ VN+  L+ +T +EA   L N    V + + +     
Sbjct: 224 VTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGK----P 279

Query: 96  KSATNCDNLQP----NPKNLPKKNIIINQRQKNIVEKSLMPERQVSMPEIERNKTEVIAT 151
            +    D   P    +  + P +N +++     +       E + S+P I   +   I  
Sbjct: 280 TTIYMTDPYGPPDITHSYSPPMENHLLSGNNGTL-------EYKTSLPPISPGRYSPIPK 332

Query: 152 TQVSNEKSQ------TSNCSKIRNKVTGMRKFS---C--QFDGISPRRRQSVVDHNRSNV 200
             + ++          S  +K+ +K    R +S   C   F   +P     +     S +
Sbjct: 333 HMLVDDDYTRPPEPVYSTVNKLCDKPASPRHYSPVECDKSFLLSAPYSHYHLGLLPDSEM 392

Query: 201 AATPNNSNAT------VKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFV 254
            +   +S AT      ++R  SL      V   KG     LGF+IVGG D      GIFV
Sbjct: 393 TSHSQHSTATRQPSMTLQRAVSLEGEPRKVVLHKG--STGLGFNIVGGEDGE----GIFV 446

Query: 255 KTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
             I   G A  + +L+ GD+I+++NG+ L   +H +A A  K
Sbjct: 447 SFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALK 488

Required for perception of chronic pain through NMDA receptor signaling. Regulates surface expression of NMDA receptors in dorsal horn neurons of the spinal cord. Interacts with the cytoplasmic tail of NMDA receptor subunits as well as inward rectifying potassium channels. Involved in regulation of synaptic stability at cholinergic synapses. Part of the postsynaptic protein scaffold of excitatory synapses.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
242014198	861	pdz domain protein arc, putative [Pedicu	0.950	0.337	0.421	9e-55
328718661	638	PREDICTED: hypothetical protein LOC10016	0.810	0.388	0.352	2e-37
242014196	756	pdz domain protein arc, putative [Pedicu	0.944	0.382	0.349	2e-35
307190906	781	PDZ domain-containing protein 2 [Campono	0.803	0.314	0.34	2e-34
357611875	872	putative pdz domain protein arc [Danaus	0.954	0.334	0.320	1e-33
383852306	918	PREDICTED: uncharacterized protein LOC10	0.859	0.286	0.331	5e-33
307209133	795	FERM and PDZ domain-containing protein 2	0.764	0.294	0.355	6e-33
345485946	903	PREDICTED: hypothetical protein LOC10067	0.849	0.287	0.323	6e-33
380028145	767	PREDICTED: uncharacterized protein LOC10	0.807	0.322	0.355	1e-32
328780558	768	PREDICTED: hypothetical protein LOC10057	0.807	0.321	0.355	2e-32

>gi|242014198|ref|XP_002427780.1| pdz domain protein arc, putative [Pediculus humanus corporis] gi|212512238|gb|EEB15042.1| pdz domain protein arc, putative [Pediculus humanus corporis]

 Score =  219 bits (559), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 137/325 (42%), Positives = 193/325 (59%), Gaps = 34/325 (10%)

Query: 5   FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
           FK  R  K++  E+GI+IE++D  A  S  +++ IE GG   RDGR  +GDELIKVN KR
Sbjct: 522 FKTIRFYKEEYEEMGIFIEKKDSNAKTSNCVVTQIENGGLADRDGRIKIGDELIKVNGKR 581

Query: 65  LKGLTIQEAREALNNKDSHVEIVICRNP--DDAKSATNCDNLQPNPKNLPKKNIIINQRQ 122
           L+G+++ EA+  L N    VE+VI RNP  +D++   +  N     K   +K+     R+
Sbjct: 582 LRGVSLGEAKVILKNVGKEVELVIARNPTSEDSERKNHKGNNYETEKKTDRKDSHGGNRK 641

Query: 123 KNIVEK-SLMPERQVSMPEIERN------------KTEVIATTQ------VSNEKSQTSN 163
            ++ +          S  EI RN             +E+I            ++K+  + 
Sbjct: 642 ISLSDLLVNRSSVNSSSKEISRNFGSKLKSDNNKFDSEMIMPKTKPPPIVTRSDKNHETK 701

Query: 164 CSKIRNKVTGMRKFSCQFDGISPR-RRQSVVDHNRSNVAATPNNSNATV---------KR 213
             K +  +TGM KFS  FD ++PR +R++ +    S+ +AT     +           +R
Sbjct: 702 FDKDKT-MTGMLKFSYNFDAVTPRSQRENTLPP--SSFSATGGMKGSEGGGGGGGTLPRR 758

Query: 214 PKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGD 273
           PKSL+LS  TVTF KGPG+KSLGFSIVGG+DSPKGN+GIFVKTIFQSGQA+E+ KL+EGD
Sbjct: 759 PKSLTLSFLTVTFVKGPGKKSLGFSIVGGKDSPKGNIGIFVKTIFQSGQASEDGKLKEGD 818

Query: 274 EIIAINGVPLENKTHAEAIAMFKDI 298
           EI+A+NG PL+  THAEAI MFK++
Sbjct: 819 EILAVNGTPLQGMTHAEAINMFKNV 843

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328718661|ref|XP_001946238.2| PREDICTED: hypothetical protein LOC100160232 [Acyrthosiphon pisum]

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/295 (35%), Positives = 154/295 (52%), Gaps = 47/295 (15%)

Query: 4   QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
           + K  R  K    ++G+ +E +D  +     +I+ +   G   RDG+  + DE+IK+N  
Sbjct: 357 EMKTIRFSKRLGEDVGVNVECRDSSSRTRTLIITALT--GPAARDGKLCIQDEIIKINGT 414

Query: 64  RLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQK 123
           R+KGL  Q+    + +    VE V+ R+     S T    L   P  +PK       + +
Sbjct: 415 RVKGLRRQDVESIMRSSKYSVEFVVSRSKCQPISNTEQVLLIQKPPTVPK----YPAKSE 470

Query: 124 NIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEKSQTSNCSKIRNKVTGMRKFSCQFDG 183
            + E   +  RQ S+PEI+  +                      + K+TGMRKFS   D 
Sbjct: 471 EVHEP--LYSRQSSLPEIKLEE----------------------KPKMTGMRKFSVHLDQ 506

Query: 184 ISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGR 243
             P+  Q                    + RP+SLS+S+ T+ F KGPG KSLGFSIVGG 
Sbjct: 507 TRPKHTQL-----------------PRLPRPRSLSISLKTIIFHKGPGYKSLGFSIVGGI 549

Query: 244 DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
           DSPKG +GIFVKTIF +GQAAE++ L+EGDEII++NG  ++   H++AIA+FK++
Sbjct: 550 DSPKGCMGIFVKTIFPTGQAAESQLLKEGDEIISVNGKSMDGFKHSQAIALFKEV 604

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014196|ref|XP_002427779.1| pdz domain protein arc, putative [Pediculus humanus corporis] gi|212512237|gb|EEB15041.1| pdz domain protein arc, putative [Pediculus humanus corporis]

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/318 (34%), Positives = 173/318 (54%), Gaps = 29/318 (9%)

Query: 5   FKVFRVVKDDSNE-LGIYIERQDGGAHFSP-YLISHIEPGGAIHRDGRFHVGDELIKVND 62
           FKV R+ +   +E LGI+I +       +P YLI+HI P G   RD    VGDE++ VN 
Sbjct: 408 FKVIRLFRSSPDEELGIFIAKTKLADQGAPGYLIAHIVPDGLADRDKNLLVGDEIVNVNG 467

Query: 63  KRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQP---NPKNLPKKNIIIN 119
           +RL+GL++  AR  L +    V+IVI R+    + A      +P      ++  +N+ I 
Sbjct: 468 RRLRGLSMPTARRILCSGPVEVDIVIARSVSKDEDAVTVKREKPIKMRESSVDYENVQIQ 527

Query: 120 QRQKNI-----VEKSLMPERQVSMPEIERNKTEVIATT----QVSNEKSQTSNCSKIRNK 170
               +      ++K +  E   S P I    T    +T    ++   K    N + I +K
Sbjct: 528 MSSSSTSTVVNIKKKMENEEDGSRPVIF---TPGFCSTPSKPKMDKAKILLRNGNSINSK 584

Query: 171 VTGMRKFSCQFDGISPRRRQSVV----DHNRSNVAATPN----NSNATV--KRPKSLSLS 220
           +  ++K    ++  +  ++ S++    + N+   + T +    N N     +RPKS   S
Sbjct: 585 M--LQKALANYNSSNDEQQSSLILQSSNMNKKKKSITESSLFLNGNLCTLPRRPKSTICS 642

Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
             T+ ++KGPG+KSLGF+IVGG+DSPKG LGIF+K+I  +GQAAE+ +LREGDEI+A+NG
Sbjct: 643 FQTIIYEKGPGKKSLGFTIVGGKDSPKGALGIFIKSILDNGQAAEDGRLREGDEILAVNG 702

Query: 281 VPLENKTHAEAIAMFKDI 298
               + TH EA+A+FK I
Sbjct: 703 QVCHDLTHTEAVAIFKRI 720

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307190906|gb|EFN74730.1| PDZ domain-containing protein 2 [Camponotus floridanus]

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 160/300 (53%), Gaps = 54/300 (18%)

Query: 7   VFRVVKDDSNE-LGIYIERQDGGAHFSP-YLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
           V +++K+ S++ LGI+I +    +  SP YL++H+ P G   ++G   +GDE++ VN KR
Sbjct: 494 VVKLLKETSDQCLGIFIAKT---SESSPGYLVAHVVPNGLADKEGTLRIGDEILIVNGKR 550

Query: 65  LKGLTIQEAREALNNKDS--HVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQ 122
           L+GL++ EAR+ L N      V+IVI R  D                        ++Q  
Sbjct: 551 LRGLSMAEARKILGNGSGPGDVDIVISRYSD------------------------VDQLA 586

Query: 123 KNIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEKSQTSNCSKIR----NKVTGMRKFS 178
           K + E S+  E  VSM   E     ++ ++  S+ +   + C + R    N+     KF+
Sbjct: 587 KKLKESSVDYE-NVSM---EDGHGVIVESSPSSHFRKHQTRCHRDRKDESNRSISSDKFA 642

Query: 179 CQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFS 238
              D        +    N S     P       +RP++   +  TV F+KG G+KSLGF+
Sbjct: 643 TNID--------NTFAQNISKFCTLP-------RRPRNTVSTFLTVLFEKGAGKKSLGFT 687

Query: 239 IVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
           IVGGRDSPKG++GIF+K++   GQAAE+ +LR GDEI+A+NG    + TH EA+ +F++I
Sbjct: 688 IVGGRDSPKGSIGIFIKSVLPGGQAAEDGRLRAGDEILAVNGQVCHDLTHREAVQLFRNI 747

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357611875|gb|EHJ67690.1| putative pdz domain protein arc [Danaus plexippus]

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/331 (32%), Positives = 174/331 (52%), Gaps = 39/331 (11%)

Query: 2   EKQFKVFRVVKDD-SNELGIYIERQ---DGGAHFSPYLISHIEPGGAIHRDGRFHVGDEL 57
           + +FKV R++K++  +ELGI+I +    D G H   YL++H+   G   ++G   +GDEL
Sbjct: 516 QSEFKVVRIIKNNPGDELGIFIAKTKLLDEG-HVG-YLVAHVVAEGLADKEGTLQIGDEL 573

Query: 58  IKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLP----- 112
           + VN +RL+ LT+ EA+EAL +  + ++IVICR     KS       +P  +N+      
Sbjct: 574 LNVNGRRLRDLTMSEAKEALRSGSAEIDIVICRQ--RQKSEHESIQREPTQRNIALMRES 631

Query: 113 ---KKNIIINQRQKNIVEKSLMPERQVSMPEIER-----NKTEVIATTQVSNEKSQTSNC 164
               +N II  +++   +  +  + +   P   R     ++ +    TQ    K Q++  
Sbjct: 632 SVDYENAIILGKERCNNKYDIKVDLRQKEPACNRLLSGTDEADGTEDTQSRFLKGQSAGY 691

Query: 165 SKIRNKVT--------GMRK----FSCQFDGIS---PRRRQSVVDHNRSNVAATPNNSNA 209
           S + NK+         G  K     SC  D +    P       D +  N+  T N +N 
Sbjct: 692 SSMNNKLLRRQVVSYGGANKDALVLSCAGDIVDVDVPDGTTERTDKHEDNMQ-TQNTANF 750

Query: 210 TV--KRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENE 267
               ++P++ + +  T+ F+KG G+K LGF+IVGGRDSP+G LGIF+K+I   GQA ++ 
Sbjct: 751 CTLPRKPRAPTHTYHTIVFEKGHGKKPLGFTIVGGRDSPRGPLGIFIKSILPQGQAIDDG 810

Query: 268 KLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
           +L  GDE++A+NG       H EA+A+FK +
Sbjct: 811 RLNAGDEVLAVNGQACHELAHVEALALFKAV 841

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852306|ref|XP_003701669.1| PREDICTED: uncharacterized protein LOC100876977 [Megachile rotundata]

 Score =  147 bits (371), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/296 (33%), Positives = 149/296 (50%), Gaps = 33/296 (11%)

Query: 1   MEKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
           + ++ K  ++  D    LGI +ER++    F  Y+IS +   G   +  +F +GDE+++V
Sbjct: 616 VRRELKTMKLTVDKPGSLGISVERREAVRPF--YVISKMNVNGEAAKSKQFRIGDEIVRV 673

Query: 61  NDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQ 120
             +RL+G++I EAR AL N    VE+ I R P         D            +I++  
Sbjct: 674 CGRRLRGMSIAEARNALKNCLGTVELQIAREPTFTFGEELGDTW---------GDILVRT 724

Query: 121 RQKNIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEKSQTSNCSKIRNKVTGMRKFSCQ 180
           R  + V      +   S+ + +    +  A   +S+  S+T++      K+TGMRKF   
Sbjct: 725 RSDSAVWTLKEKDVSASVDDKDNKVAKDEANLSISSMDSETNSKKDSDQKMTGMRKF--- 781

Query: 181 FDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIV 240
                       V   R+     P       +R  SLS+ + T+T  KG  +K LGFSIV
Sbjct: 782 -----------YVVRKRATTLVCP-------RRATSLSMDLLTITLDKGASKK-LGFSIV 822

Query: 241 GGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
           GG DS KG++GIFVK I   GQAAE   L+ GDEI+AING+ ++  THA+A+  FK
Sbjct: 823 GGSDSNKGSMGIFVKDIIAGGQAAEEGTLKVGDEILAINGISMDGLTHAKALQTFK 878

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209133|gb|EFN86275.1| FERM and PDZ domain-containing protein 2 [Harpegnathos saltator]

 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 103/290 (35%), Positives = 155/290 (53%), Gaps = 56/290 (19%)

Query: 18  LGIYIERQDGGAHFSP-YLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREA 76
           LGI+I +    A  +P YL++H+ P G   ++G   +GDE++ VN KRL+GL++ EAR  
Sbjct: 519 LGIFIAKT---AESNPGYLVAHVVPNGLADKEGTLRIGDEILIVNGKRLRGLSMTEARRI 575

Query: 77  LNNKD--SHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKSLMPER 134
           L N      V+IV+ R  D                        ++QR + + E S+  E 
Sbjct: 576 LGNGSGPGDVDIVVSRFSD------------------------VDQRARRLKESSVDYE- 610

Query: 135 QVSMPEIERNKTEVIATTQVSN-EKSQTSNCSKIR----NKVTGMRKFSCQFD-GISPRR 188
            VSM   E     ++ T+  S+  K Q +   + R    ++     KF+   D G+S   
Sbjct: 611 NVSM---EDGHGTIVETSPGSHFRKHQATRSQRDRKDESSRSASSDKFATNLDCGLS--- 664

Query: 189 RQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKG 248
            +SV     S     P       +RP+S   +  TV F+KG G+KSLGF+IVGGRDSPKG
Sbjct: 665 -RSV-----SKFCTLP-------RRPRSTVSTFLTVVFEKGAGKKSLGFTIVGGRDSPKG 711

Query: 249 NLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
           ++GIF+K++   GQAAE+ +LR GDEI+A+NG    + TH EA+ +F++I
Sbjct: 712 SIGIFIKSVLPGGQAAEDGRLRAGDEILALNGHVCHDLTHREAVQLFRNI 761

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485946|ref|XP_003425372.1| PREDICTED: hypothetical protein LOC100679383 [Nasonia vitripennis]

 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 151/306 (49%), Gaps = 46/306 (15%)

Query: 1   MEKQFKVFRVVKDDSNELGIYIERQDGGAHFSPY-LISHIEPGGAIHRDGRFHVGDELIK 59
           + ++ K  ++  +    LGI ++R D      PY +IS +EP G   +   F VGDE+++
Sbjct: 602 IRRELKTMKLQVERCGSLGISVQRCDA---VRPYFVISEMEPQGDARKSKMFRVGDEIVR 658

Query: 60  VNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD-----DAKSATNCDNLQPNPKNLPKK 114
           V+ +RL+G+++ EA+ AL N    VE+ I R P+     +      C+           +
Sbjct: 659 VSGRRLRGMSLAEAKNALKNCVGSVELQIAREPNFFFGGELGDTWGCE-----------E 707

Query: 115 NIIINQRQKNIVEKSLMPER----QVSMPEIERNKTEVIATTQVSNEKSQTSNCSKIRNK 170
            +++  +  + V   +  ER    Q    + E    E+I             +      K
Sbjct: 708 EVMVRSKSDSDVWGPIAKEREEEEQHRFQQAEAKTCEIIGAVTKDGRTVSAQDMECEEQK 767

Query: 171 VTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGP 230
           VTGM+KF  +                RS+  AT +      +R  SLS+ + TVT +KG 
Sbjct: 768 VTGMKKFQIR---------------KRSSTIATGS------RRATSLSMDLLTVTLEKG- 805

Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
           G K LGF+IVGG DS KG +GIF+K I   GQAAE   L+  DEI+A+NGVPL+  THA 
Sbjct: 806 GPKRLGFTIVGGADSNKGRMGIFIKDIMAYGQAAEQGVLKVEDEILAVNGVPLDGMTHAR 865

Query: 291 AIAMFK 296
           A+ +FK
Sbjct: 866 ALQIFK 871

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028145|ref|XP_003697769.1| PREDICTED: uncharacterized protein LOC100871550 [Apis florea]

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/298 (35%), Positives = 161/298 (54%), Gaps = 51/298 (17%)

Query: 7   VFRVVKDDSNE-LGIYIERQDGGAHFSP-YLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
           V ++ ++ S++ LGI+I +    A  SP YL++H+ P G   ++G   +GDE++ VN KR
Sbjct: 481 VVKLPRESSDQCLGIFIAKT---AESSPGYLVAHVVPNGLADKEGTLRIGDEILIVNGKR 537

Query: 65  LKGLTIQEAREALN--NKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQ 122
           L+GL++ EAR+ L   N    V+IV+ R                           ++Q  
Sbjct: 538 LRGLSMAEARKILGSGNGPGDVDIVVSRYS------------------------AVDQSP 573

Query: 123 KNIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEKSQTSNCSKIRNKVTGMRKFSCQFD 182
           K + E S+  E  V M     N   VI       E S  ++  K + K    RK  C   
Sbjct: 574 KKLTESSVDYE-NVHM----ENGHGVIV------ENSPGTHFRKHQTKHHRDRKNECNRS 622

Query: 183 GISPRRRQSVVDHNRSNVAATPNNSNATV--KRPKSLSLSMFTVTFQKGPGQKSLGFSIV 240
           G S +   +VV+    N  ++ N SN     +RP++   +  TV FQKGPG+KSLGF+IV
Sbjct: 623 GSSDK---AVVE----NGTSSQNVSNFCTLPRRPRNTVSTFLTVVFQKGPGKKSLGFTIV 675

Query: 241 GGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
           GG DSPKG++GIF+K++   GQAAE+ +LR GDEI+A+NG    + TH +A+ +F++I
Sbjct: 676 GGSDSPKGSIGIFIKSVLPGGQAAEDGRLRAGDEILAVNGHVCHDLTHRKAVQLFRNI 733

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780558|ref|XP_003249819.1| PREDICTED: hypothetical protein LOC100578420 [Apis mellifera]

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/298 (35%), Positives = 161/298 (54%), Gaps = 51/298 (17%)

Query: 7   VFRVVKDDSNE-LGIYIERQDGGAHFSP-YLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
           V ++ ++ S++ LGI+I +    A  SP YL++H+ P G   ++G   +GDE++ VN KR
Sbjct: 482 VVKLPRESSDQCLGIFIAKT---AESSPGYLVAHVVPNGLADKEGTLRIGDEILIVNGKR 538

Query: 65  LKGLTIQEAREALN--NKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQ 122
           L+GL++ EAR+ L   N    V+IV+ R                           ++Q  
Sbjct: 539 LRGLSMAEARKILGSGNGPGDVDIVVSRYS------------------------AVDQSP 574

Query: 123 KNIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEKSQTSNCSKIRNKVTGMRKFSCQFD 182
           K + E S+  E  V M     N   VI       E S  ++  K + K    RK  C   
Sbjct: 575 KKLTESSVDYE-NVHM----ENGHGVIV------ENSPGTHFRKHQTKHHRDRKNECNRT 623

Query: 183 GISPRRRQSVVDHNRSNVAATPNNSNATV--KRPKSLSLSMFTVTFQKGPGQKSLGFSIV 240
           G S +   +VV+    N  ++ N SN     +RP++   +  TV FQKGPG+KSLGF+IV
Sbjct: 624 GSSDK---AVVE----NGTSSQNVSNFCTLPRRPRNTVSTFLTVVFQKGPGKKSLGFTIV 676

Query: 241 GGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
           GG DSPKG++GIF+K++   GQAAE+ +LR GDEI+A+NG    + TH +A+ +F++I
Sbjct: 677 GGSDSPKGSIGIFIKSVLPGGQAAEDGRLRAGDEILAVNGHVCHDLTHRKAVQLFRNI 734

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
FB|FBgn0000008	1329	a "arc" [Drosophila melanogast	0.248	0.057	0.657	1.4e-30
UNIPROTKB|O15018	2839	PDZD2 "PDZ domain-containing p	0.366	0.039	0.418	2.8e-26
UNIPROTKB|F1SP36	2636	PDZD2 "Uncharacterized protein	0.366	0.042	0.410	1.9e-24
RGD|619958	2766	Pdzd2 "PDZ domain containing 2	0.366	0.040	0.410	6.2e-24
MGI|MGI:1343489	2055	Mpdz "multiple PDZ domain prot	0.235	0.035	0.554	4.5e-22
RGD|3105	2054	Mpdz "multiple PDZ domain prot	0.235	0.035	0.554	7.3e-22
UNIPROTKB|D4A2W4	2068	Mpdz "Multiple PDZ domain prot	0.235	0.034	0.554	7.4e-22
UNIPROTKB|O75970	2070	MPDZ "Multiple PDZ domain prot	0.235	0.034	0.527	2.3e-21
UNIPROTKB|F1SMP5	1588	MPDZ "Uncharacterized protein"	0.235	0.045	0.527	8.9e-21
UNIPROTKB|F1MMT3	2056	F1MMT3 "Uncharacterized protei	0.235	0.035	0.527	2e-20

FB|FBgn0000008 a "arc" [Drosophila melanogaster (taxid:7227)]

 Score = 269 (99.8 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
 Identities = 50/76 (65%), Positives = 63/76 (82%)

Query:   223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
             T+TF KGPG KSLGFSIVGGRDSPKGN+GIFVKT+F SGQAA++  L+ GDEI+ ING  
Sbjct:  1232 TITFFKGPGLKSLGFSIVGGRDSPKGNMGIFVKTVFPSGQAADDGTLQAGDEIVEINGNS 1291

Query:   283 LENKTHAEAIAMFKDI 298
             ++  +HAE I +FK++
Sbjct:  1292 VQGMSHAETIGLFKNV 1307

GO:0005912 "adherens junction" evidence=IDA

GO:0048749 "compound eye development" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|O15018 PDZD2 "PDZ domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 215 (80.7 bits), Expect = 2.8e-26, Sum P(2) = 2.8e-26
 Identities = 49/117 (41%), Positives = 70/117 (59%)

Query:   182 DGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVG 241
             D  S  +   +V  +  +++ T   S   + RP  +S+    +   K  G K LGFSI G
Sbjct:   549 DSSSASQEYHIVKKSTRSLSTTQVESPWRLIRPSVISI----IGLYKEKG-KGLGFSIAG 603

Query:   242 GRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
             GRD  +G +GIFVKTIF +G AAE+ +L+EGDEI+ +NG+P++  T  EAI  FK I
Sbjct:   604 GRDCIRGQMGIFVKTIFPNGSAAEDGRLKEGDEILDVNGIPIKGLTFQEAIHTFKQI 660

GO:0007155 "cell adhesion" evidence=IEA

GO:0005634 "nucleus" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005576 "extracellular region" evidence=ISS

GO:0005911 "cell-cell junction" evidence=ISS

UNIPROTKB|F1SP36 PDZD2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 212 (79.7 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
 Identities = 48/117 (41%), Positives = 69/117 (58%)

Query:   182 DGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVG 241
             D     +   +V  +  +++ T   S   + RP  +S+    +   K  G K LGFSI G
Sbjct:   392 DSTGSAQEYHIVKKSTRSLSTTQVESPWRLIRPSVISI----IGLYKEKG-KGLGFSIAG 446

Query:   242 GRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
             GRD  +G +GIFVKTIF +G AAE+ +L+EGDEI+ +NG+P++  T  EAI  FK I
Sbjct:   447 GRDCIRGQMGIFVKTIFPNGSAAEDGRLKEGDEILDVNGIPIKGLTFQEAIHTFKQI 503

GO:0005737 "cytoplasm" evidence=IEA

RGD|619958 Pdzd2 "PDZ domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 211 (79.3 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
 Identities = 48/117 (41%), Positives = 69/117 (58%)

Query:   182 DGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVG 241
             D     +   +V  +  +++ T   S   + RP  +S+    +   K  G K LGFSI G
Sbjct:   498 DSTGTSQEYHIVKKSTRSLSTTHVESPWRLIRPSVISI----IGLYKEKG-KGLGFSIAG 552

Query:   242 GRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
             GRD  +G +GIFVKTIF +G AAE+ +L+EGDEI+ +NG+P++  T  EAI  FK I
Sbjct:   553 GRDCIRGQMGIFVKTIFPNGSAAEDGRLKEGDEILDVNGIPIKGLTFQEAIHTFKQI 609

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA;ISO;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005911 "cell-cell junction" evidence=IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IDA

GO:0035556 "intracellular signal transduction" evidence=TAS

GO:0043005 "neuron projection" evidence=IDA

GO:0045177 "apical part of cell" evidence=IDA

MGI|MGI:1343489 Mpdz "multiple PDZ domain protein" [Mus musculus (taxid:10090)]

 Score = 205 (77.2 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
 Identities = 41/74 (55%), Positives = 53/74 (71%)

Query:   223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
             T+T  +GP    LGFSIVGG  SP G+L I+VKT+F  G AAE+ +L+ GD+IIA+NG  
Sbjct:  1972 TITLDRGPD--GLGFSIVGGYGSPHGDLPIYVKTVFAKGAAAEDGRLKRGDQIIAVNGQS 2029

Query:   283 LENKTHAEAIAMFK 296
             LE  TH EA+A+ K
Sbjct:  2030 LEGVTHEEAVAILK 2043

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0005923 "tight junction" evidence=IDA

GO:0007155 "cell adhesion" evidence=IDA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0016327 "apicolateral plasma membrane" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0042552 "myelination" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IDA

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

RGD|3105 Mpdz "multiple PDZ domain protein" [Rattus norvegicus (taxid:10116)]

 Score = 205 (77.2 bits), Expect = 7.3e-22, Sum P(2) = 7.3e-22
 Identities = 41/74 (55%), Positives = 53/74 (71%)

Query:   223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
             T+T  +GP    LGFSIVGG  SP G+L I+VKT+F  G AAE+ +L+ GD+IIA+NG  
Sbjct:  1971 TITLDRGPD--GLGFSIVGGYGSPHGDLPIYVKTVFAKGAAAEDGRLKRGDQIIAVNGQS 2028

Query:   283 LENKTHAEAIAMFK 296
             LE  TH EA+A+ K
Sbjct:  2029 LEGVTHEEAVAILK 2042

GO:0005737 "cytoplasm" evidence=ISO

GO:0005923 "tight junction" evidence=IEA;ISO

GO:0007155 "cell adhesion" evidence=IEA;ISO

GO:0008022 "protein C-terminus binding" evidence=IEA;ISO

GO:0012505 "endomembrane system" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA;ISO

GO:0016327 "apicolateral plasma membrane" evidence=IEA;ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA;ISO

GO:0035556 "intracellular signal transduction" evidence=TAS

GO:0042552 "myelination" evidence=IPI

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA;ISO

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|D4A2W4 Mpdz "Multiple PDZ domain protein" [Rattus norvegicus (taxid:10116)]

 Score = 205 (77.2 bits), Expect = 7.4e-22, Sum P(2) = 7.4e-22
 Identities = 41/74 (55%), Positives = 53/74 (71%)

Query:   223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
             T+T  +GP    LGFSIVGG  SP G+L I+VKT+F  G AAE+ +L+ GD+IIA+NG  
Sbjct:  1985 TITLDRGPD--GLGFSIVGGYGSPHGDLPIYVKTVFAKGAAAEDGRLKRGDQIIAVNGQS 2042

Query:   283 LENKTHAEAIAMFK 296
             LE  TH EA+A+ K
Sbjct:  2043 LEGVTHEEAVAILK 2056

GO:0005923 "tight junction" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

UNIPROTKB|O75970 MPDZ "Multiple PDZ domain protein" [Homo sapiens (taxid:9606)]

 Score = 200 (75.5 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
 Identities = 39/74 (52%), Positives = 54/74 (72%)

Query:   223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
             ++T ++GP    LGFSIVGG  SP G+L I+VKT+F  G A+E+ +L+ GD+IIA+NG  
Sbjct:  1987 SITLERGPD--GLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQS 2044

Query:   283 LENKTHAEAIAMFK 296
             LE  TH EA+A+ K
Sbjct:  2045 LEGVTHEEAVAILK 2058

GO:0019048 "virus-host interaction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0016327 "apicolateral plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1SMP5 MPDZ "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 198 (74.8 bits), Expect = 8.9e-21, Sum P(2) = 8.9e-21
 Identities = 39/74 (52%), Positives = 53/74 (71%)

Query:   223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
             ++T  +GP    LGFSIVGG  SP G+L I+VKT+F  G A+E+ +L+ GD+IIA+NG  
Sbjct:  1505 SITLDRGPD--GLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQS 1562

Query:   283 LENKTHAEAIAMFK 296
             LE  TH EA+A+ K
Sbjct:  1563 LEGVTHEEAVAILK 1576

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

UNIPROTKB|F1MMT3 F1MMT3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 198 (74.8 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
 Identities = 39/74 (52%), Positives = 53/74 (71%)

Query:   223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
             ++T  +GP    LGFSIVGG  SP G+L I+VKT+F  G A+E+ +L+ GD+IIA+NG  
Sbjct:  1973 SITLDRGPD--GLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQS 2030

Query:   283 LENKTHAEAIAMFK 296
             LE  TH EA+A+ K
Sbjct:  2031 LEGVTHEEAVAILK 2044

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	306
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	3e-19
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	1e-15
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	2e-13
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	2e-11
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	1e-10
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	9e-10
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	6e-05
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	1e-04
cd00988	85	cd00988, PDZ_CTP_protease, PDZ domain of C-termina	2e-04
cd00988	85	cd00988, PDZ_CTP_protease, PDZ domain of C-termina	4e-04

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 79.9 bits (198), Expect = 3e-19
 Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 5/75 (6%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
            TVT +K PG   LGFS+ GG+DS     GIFV  + + G  AE   LR GD I+ +NGV
Sbjct: 2   RTVTLRKDPG-GGLGFSLRGGKDS---GGGIFVSRV-EPGGPAERGGLRVGDRILEVNGV 56

Query: 282 PLENKTHAEAIAMFK 296
            +E  TH EA+ + K
Sbjct: 57  SVEGLTHEEAVELLK 71

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 70.5 bits (173), Expect = 1e-15
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
              V  +KG G   LGFS+VGG+D   G   + V ++   G  A    LR GD I+ +NG
Sbjct: 2   PRLVELEKGGGG--LGFSLVGGKDEGGG---VVVSSVVP-GSPAAKAGLRVGDVILEVNG 55

Query: 281 VPLENKTHAEAIAMFK 296
             +E  TH EA+ + K
Sbjct: 56  TSVEGLTHLEAVDLLK 71

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 64.1 bits (157), Expect = 2e-13
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 9  RVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
           + KD    LG  +  + G        +S +EPGG   R G   VGD +++VN   ++GL
Sbjct: 5  TLRKDPGGGLGFSL--RGGKDSGGGIFVSRVEPGGPAER-GGLRVGDRILEVNGVSVEGL 61

Query: 69 TIQEAREALNNKDSHVEIVIC 89
          T +EA E L N    V + + 
Sbjct: 62 THEEAVELLKNSGDEVTLTVR 82

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 5/76 (6%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            VT +K  G+  LGFS+VGG D   G+ GIFV  +   G AAE   L+EGD I++ING  
Sbjct: 1   EVTLEK-SGRGGLGFSLVGGSD---GDPGIFVSEV-LPGGAAEAGGLQEGDRILSINGQD 55

Query: 283 LENKTHAEAIAMFKDI 298
           LEN +H EA+   K  
Sbjct: 56  LENLSHDEAVLALKGS 71

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 14 DSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA 73
              LG  +    G       ++S + PG    + G   VGD +++VN   ++GLT  EA
Sbjct: 10 GGGGLGFSL--VGGKDEGGGVVVSSVVPGSPAAKAG-LRVGDVILEVNGTSVEGLTHLEA 66

Query: 74 REALNNKDSHVEIVICRNP 92
           + L      V + + R  
Sbjct: 67 VDLLKKAGGKVTLTVLRGG 85

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 53.8 bits (130), Expect = 9e-10
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAI 292
             LGFSI GG        G+ V ++      AE   L+ GD I+A+NG  ++N T  +  
Sbjct: 1   GGLGFSIRGG-----TEGGVVVLSVEPGS-PAERAGLQAGDVILAVNGTDVKNLTLEDVA 54

Query: 293 AMFKDIFPQSSKL 305
            + K    +   L
Sbjct: 55  ELLKKEVGEKVTL 67

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 16 NELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEARE 75
            LG  I     G      ++  +EPG    R G    GD ++ VN   +K LT+++  E
Sbjct: 1  GGLGFSI----RGGTEGGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAE 55

Query: 76 ALNNKDSH-VEIVI 88
           L  +    V + +
Sbjct: 56 LLKKEVGEKVTLTV 69

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 9  RVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
           + K     LG  +     G       +S + PGGA    G    GD ++ +N + L+ L
Sbjct: 3  TLEKSGRGGLGFSLVGGSDGDP--GIFVSEVLPGGAAEAGG-LQEGDRILSINGQDLENL 59

Query: 69 TIQEAREALNNKDSHVEIVI 88
          +  EA  AL      V + I
Sbjct: 60 SHDEAVLALKGSGGEVTLTI 79

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 17/83 (20%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 18 LGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL 77
          +G+ ++  DGG      +I+ + PG    + G    GD ++ ++ + + GL++++  + L
Sbjct: 4  IGLELKYDDGG-----LVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLL 57

Query: 78 NNK-DSHVEIVICRNPDDAKSAT 99
            K  + V + + R   + +  T
Sbjct: 58 RGKAGTKVRLTLKRGDGEPREVT 80

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 85

>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 10/46 (21%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 251 GIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
           G+ + ++   G  A    ++ GD I+AI+G P++  +  + + + +
Sbjct: 14  GLVITSVL-PGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLR 58

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	306
KOG3209|consensus	984		100.0
KOG3209|consensus	984		99.96
KOG3580|consensus	1027		99.95
KOG3580|consensus	1027		99.94
KOG3605|consensus	829		99.85
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.75
KOG3550|consensus	207		99.66
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.64
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	99.63
PRK10139	455	serine endoprotease; Provisional	99.63
KOG3550|consensus	207		99.62
PRK10942	473	serine endoprotease; Provisional	99.6
PRK10779	449	zinc metallopeptidase RseP; Provisional	99.6
KOG3551|consensus	506		99.51
KOG3549|consensus	505		99.51
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	99.5
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	99.46
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	99.4
KOG3553|consensus	124		99.33
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	99.33
KOG3551|consensus	506		99.32
KOG3553|consensus	124		99.32
KOG1892|consensus	1629		99.31
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	99.31
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	99.27
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	99.22
KOG3549|consensus	505		99.18
KOG3571|consensus	626		99.17
KOG3571|consensus	626		99.16
KOG1892|consensus	1629		99.14
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	99.1
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	99.07
KOG3651|consensus	429		99.05
KOG3552|consensus	1298		99.0
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	98.99
KOG3606|consensus	358		98.96
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	98.93
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.91
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	98.82
KOG0609|consensus	542		98.81
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	98.8
KOG3542|consensus	1283		98.78
KOG3552|consensus	1298		98.77
KOG4371|consensus	1332		98.72
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	98.69
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	98.68
PLN00049	389	carboxyl-terminal processing protease; Provisional	98.67
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	98.65
KOG3542|consensus	1283		98.62
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	98.61
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.6
KOG3605|consensus	829		98.59
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	98.57
KOG0609|consensus	542		98.55
KOG3606|consensus	358		98.55
KOG3651|consensus	429		98.54
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	98.53
PRK11186	667	carboxy-terminal protease; Provisional	98.52
PLN00049	389	carboxyl-terminal processing protease; Provisional	98.49
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	98.46
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	98.45
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	98.44
KOG3938|consensus	334		98.33
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	98.33
PRK10942	473	serine endoprotease; Provisional	98.31
PRK11186	667	carboxy-terminal protease; Provisional	98.31
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	98.31
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	98.28
PRK10139	455	serine endoprotease; Provisional	98.28
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.25
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	98.2
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	98.18
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	98.18
PRK10898	353	serine endoprotease; Provisional	98.18
KOG3834|consensus	462		98.12
KOG4407|consensus	1973		98.1
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.07
KOG3938|consensus	334		97.96
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	97.93
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	97.91
KOG1421|consensus	955		97.83
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	97.77
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	97.76
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	97.71
PRK10898	353	serine endoprotease; Provisional	97.69
KOG0606|consensus	1205		97.62
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	97.56
KOG3129|consensus	231		97.56
KOG1738|consensus	638		97.46
KOG1421|consensus	955		97.36
KOG1320|consensus	473		97.35
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	97.35
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	97.33
KOG0606|consensus	1205		97.3
KOG1738|consensus	638		97.28
COG3975	558	Predicted protease with the C-terminal PDZ domain	97.25
PRK09681	276	putative type II secretion protein GspC; Provision	97.12
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	97.0
KOG3532|consensus	1051		96.97
COG3975	558	Predicted protease with the C-terminal PDZ domain	96.96
COG3031	275	PulC Type II secretory pathway, component PulC [In	96.86
KOG3129|consensus	231		96.83
KOG1320|consensus	473		96.55
KOG4371|consensus	1332		95.97
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	95.91
KOG3532|consensus	1051		95.59
PF12812	78	PDZ_1: PDZ-like domain	95.54
KOG4407|consensus	1973		95.53
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	95.11
KOG0792|consensus	1144		94.81
PF12812	78	PDZ_1: PDZ-like domain	94.78
PRK09681	276	putative type II secretion protein GspC; Provision	94.21
KOG3834|consensus	462		91.73
COG0750	375	Predicted membrane-associated Zn-dependent proteas	90.77
KOG2921|consensus	484		87.24
COG0750	375	Predicted membrane-associated Zn-dependent proteas	85.61
KOG2921|consensus	484		85.3
KOG0792|consensus	1144		83.33
PF11874	183	DUF3394: Domain of unknown function (DUF3394); Int	81.84
COG3031	275	PulC Type II secretory pathway, component PulC [In	81.57

>KOG3209|consensus

Probab=100.00  E-value=3.4e-32  Score=249.00  Aligned_cols=214  Identities=24%  Similarity=0.397  Sum_probs=153.7

Q ss_pred             EEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEE
Q psy8436           6 KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVE   85 (306)
Q Consensus         6 ~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~   85 (306)
                      .-|.|+|.+++||||.|....+.. ..|  |..|.+||||+|||+|++||+|++|||+++.+++|.+.+.+||.+|-.|+
T Consensus       755 yDV~lhR~ENeGFGFVi~sS~~kp-~sg--iGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVt  831 (984)
T KOG3209|consen  755 YDVVLHRKENEGFGFVIMSSQNKP-ESG--IGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVT  831 (984)
T ss_pred             eeeEEecccCCceeEEEEecccCC-CCC--ccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEE
Confidence            458899999999999999875542 134  99999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCcccCcCCCCCCCCCCCCCCchhhhhccccccccc------CCCCCCCChhhhhcCccceeeecccCcccc
Q psy8436          86 IVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKS------LMPERQVSMPEIERNKTEVIATTQVSNEKS  159 (306)
Q Consensus        86 L~v~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (306)
                      |+|.-.+.........+.                ..+..+....      ..+..+.+..+                   
T Consensus       832 LtIip~ee~~~~~~~~sa----------------~~~s~~t~~~~~~q~~glp~~~~s~~~-------------------  876 (984)
T KOG3209|consen  832 LTIIPPEEAGPPTSMTSA----------------EKQSPFTQNGPYEQQYGLPGPRPSVYE-------------------  876 (984)
T ss_pred             EEEcChhccCCCCCCcch----------------hhcCcccccCCHhHccCCCCCCccccc-------------------
Confidence            999865433211111000                0000000000      00000000000                   


Q ss_pred             cccccccccccccccccceecccCCCCCCcCccccCCCCCCCCCCCCCCCCcCC-CCCCccceEEEEEEeCCCCCcccEE
Q psy8436         160 QTSNCSKIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKR-PKSLSLSMFTVTFQKGPGQKSLGFS  238 (306)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~l~k~~~~~~lG~~  238 (306)
                                                        ..+.      +......... .......+++|+|.|+.  .+|||+
T Consensus       877 ----------------------------------~~pq------pdt~~~~~~~~r~~qn~~~~~VelErG~--kGFGFS  914 (984)
T KOG3209|consen  877 ----------------------------------EHPQ------PDTFQGLSINDRMSQNGDLYTVELERGA--KGFGFS  914 (984)
T ss_pred             ----------------------------------cCCC------CccccceeccccccccCCeeEEEeeccc--cccceE
Confidence                                              0000      0000000000 11234778999999995  799999


Q ss_pred             EEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCc
Q psy8436         239 IVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQS  302 (306)
Q Consensus       239 l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~  302 (306)
                      |+||.+.   ++++||-++..+|||.++|++++||+|++|||++..+|+|..|+++||+-....
T Consensus       915 iRGGrey---nM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~v  975 (984)
T KOG3209|consen  915 IRGGREY---NMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRRV  975 (984)
T ss_pred             eeccccc---ccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeEE
Confidence            9999876   489999999999999999999999999999999999999999999999865443

>KOG3209|consensus

Probab=99.96  E-value=1e-26  Score=213.34  Aligned_cols=91  Identities=19%  Similarity=0.307  Sum_probs=81.6

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--C
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--D   81 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~   81 (306)
                      ++..++|+| ...||||+|.||++-..+.-+-|+.|.++|||+++|+|.+||.|+.|||..+.+.+|.+|+++++..  +
T Consensus       344 ~~ist~LvK-g~~GFGfTliGGdd~~gDefLqVKsvl~DGPAa~dGkle~GDviV~INg~cvlGhTHAqaV~~fqaiPvg  422 (984)
T KOG3209|consen  344 ELISTKLVK-GYMGFGFTLIGGDDVRGDEFLQVKSVLKDGPAAQDGKLETGDVIVHINGECVLGHTHAQAVKRFQAIPVG  422 (984)
T ss_pred             eEEEEEEee-cccccceEEecCCcCCCCceeeeeecccCCchhhcCccccCcEEEEECCceeccccHHHHHHHhhccccC
Confidence            466788998 6789999999998544445688999999999999999999999999999999999999999999998  8


Q ss_pred             CeEEEEEEeCCCCC
Q psy8436          82 SHVEIVICRNPDDA   95 (306)
Q Consensus        82 ~~v~L~v~r~~~~~   95 (306)
                      ..|.|+++|..+..
T Consensus       423 ~~V~L~lcRgyelp  436 (984)
T KOG3209|consen  423 QSVDLVLCRGYELP  436 (984)
T ss_pred             CeeeEEEecCccCC
Confidence            89999999987655

>KOG3580|consensus

Probab=99.95  E-value=2e-27  Score=214.56  Aligned_cols=259  Identities=21%  Similarity=0.271  Sum_probs=159.1

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCC----CeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFS----PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN   79 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~----gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~   79 (306)
                      |-++|+|.|++..||||.|.||.++.||.    .|+|++|.|||||  .|+||.||+|+.|||++|+++.|..|++.|++
T Consensus         8 EQhTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPA--eG~LQenDrvvMVNGvsMenv~haFAvQqLrk   85 (1027)
T KOG3580|consen    8 EQHTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPA--EGLLQENDRVVMVNGVSMENVLHAFAVQQLRK   85 (1027)
T ss_pred             hhheeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCc--ccccccCCeEEEEcCcchhhhHHHHHHHHHHh
Confidence            34799999999999999999999988764    5999999999999  69999999999999999999999999999999


Q ss_pred             CCCeEEEEEEeCCCCCcccCcCCCCCCCCCCCCCCch-hhhhcccccccccCCCCCCCChhhhhcCccceeeecccCccc
Q psy8436          80 KDSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNI-IINQRQKNIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEK  158 (306)
Q Consensus        80 ~~~~v~L~v~r~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (306)
                      |+....++|.|..+........    .+|-..+.... ...........+.+....+-.........++-......++.+
T Consensus        86 sgK~A~ItvkRprkvqvpa~~a----sPp~s~~~r~~~ded~~d~Rs~rsg~~~r~~~~s~~grsrsw~~~~er~rP~~R  161 (1027)
T KOG3580|consen   86 SGKVAAITVKRPRKVQVPALQA----SPPLSQDDRAFEDEDEFDGRSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHER  161 (1027)
T ss_pred             hccceeEEecccceeeccccCC----CCCCCCccccccchhccCcccccccccccccccccCCcccccccccccCCcccc
Confidence            9999999999987655322221    11111111111 011000000000000000000000000000000000111111


Q ss_pred             ccccccccccccccccccceecccCCCCCCcCccccCCCCCCCCCCCCCCCCcCCCCCCccceEEEEEEeCCCCCcccEE
Q psy8436         159 SQTSNCSKIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFS  238 (306)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k~~~~~~lG~~  238 (306)
                      +.....+             .......+.....  .++ +        ......+| .....+..|.|.|...++.||+.
T Consensus       162 ~rsrer~-------------ls~~~~gprs~~r--~~~-s--------s~~~~p~p-~~~~~p~kv~LvKsR~nEEyGlr  216 (1027)
T KOG3580|consen  162 ARSRERD-------------LSRDRRGPRSRSR--EHP-S--------SRSPSPEP-RGRPGPIKVLLVKSRANEEYGLR  216 (1027)
T ss_pred             ccccccc-------------cccCCCCCccccc--ccc-c--------CCCCCCCc-cCCCCcceEEEEeeccchhhccc
Confidence            0000000             0000000000000  000 0        00001111 12244567888888777899999


Q ss_pred             EEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCc
Q psy8436         239 IVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQS  302 (306)
Q Consensus       239 l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~  302 (306)
                      |.         .-|||++|...|.|+++|.|+.||.||.|||+..++|+..+|..+|.++.++-
T Consensus       217 Lg---------SqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL  271 (1027)
T KOG3580|consen  217 LG---------SQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKL  271 (1027)
T ss_pred             cc---------chhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCce
Confidence            83         46999999999999999999999999999999999999999999999887654

>KOG3580|consensus

Probab=99.94  E-value=1.1e-25  Score=203.36  Aligned_cols=266  Identities=24%  Similarity=0.394  Sum_probs=158.6

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      ++..+.++++.++.||+.+.        ..|||+.|...|.|+++|.|+.||.||.|||+..++++..+|..+|..+...
T Consensus       199 p~kv~LvKsR~nEEyGlrLg--------SqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GK  270 (1027)
T KOG3580|consen  199 PIKVLLVKSRANEEYGLRLG--------SQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGK  270 (1027)
T ss_pred             cceEEEEeeccchhhccccc--------chhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCc
Confidence            46777778889999999997        6799999999999999999999999999999999999999999999999889


Q ss_pred             EEEEEEeCCCCCcccCcCCCCCCCCCCCCCCchh--hhhcccccccccCCCC-C--CCChhhhhcCccceeeecccCccc
Q psy8436          84 VEIVICRNPDDAKSATNCDNLQPNPKNLPKKNII--INQRQKNIVEKSLMPE-R--QVSMPEIERNKTEVIATTQVSNEK  158 (306)
Q Consensus        84 v~L~v~r~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~  158 (306)
                      +.|+|.|+....        +...|+..+.....  .+.. ..+...+..++ +  +.+.........++ .......++
T Consensus       271 L~lvVlRD~~qt--------LiNiP~l~d~dSe~~disEi-~tms~rs~spp~rrs~~~s~d~~s~s~h~-p~~Ps~r~~  340 (1027)
T KOG3580|consen  271 LQLVVLRDSQQT--------LINIPSLNDSDSEIEDISEI-ETMSDRSFSPPERRSQYSSYDYHSSSEHL-PERPSSRED  340 (1027)
T ss_pred             eEEEEEecCCce--------eeecCCCccccccccchhhh-hccccccCCCchhhhhccCccccCchhcC-CCCCCcccc
Confidence            999999986554        22222222211000  0000 00111111111 1  00111000000000 000000000


Q ss_pred             --cccccccccccccccc-ccceecccCC--CCCCcCccccCCCCCCCCCCCCCCCCcCCCCC-------CccceEEEEE
Q psy8436         159 --SQTSNCSKIRNKVTGM-RKFSCQFDGI--SPRRRQSVVDHNRSNVAATPNNSNATVKRPKS-------LSLSMFTVTF  226 (306)
Q Consensus       159 --~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~l  226 (306)
                        ...+..+....++... ..........  .....+. .++|.+..      .......|+.       .....+.|.+
T Consensus       341 ~~~R~s~~gat~tPvks~~d~~~~~V~e~t~e~~~~q~-p~lP~pk~------~~~~~~~pS~~~m~~ygysP~tk~VrF  413 (1027)
T KOG3580|consen  341 TPSRLSRMGATPTPVKSTGDIAGTVVPETTKEPRYQQE-PPLPQPKA------APRTFLRPSPEDMAIYGYSPNTKMVRF  413 (1027)
T ss_pred             chhhcccCCCCCCCccCccccCCccccccccCcccccC-CCCCCccc------CcceeeecCHHHHHHhcCCCCceeEEe
Confidence              0000000000000000 0000000000  0000000 01111110      0011111111       1244578888


Q ss_pred             EeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCce
Q psy8436         227 QKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSS  303 (306)
Q Consensus       227 ~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~  303 (306)
                      .|+   .+.|+.|+||+|     .||||..|..|+||++.| |+.||+||.||.+++.++..+|||..|-.+|++..
T Consensus       414 ~KG---dSvGLRLAGGND-----VGIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEe  481 (1027)
T KOG3580|consen  414 KKG---DSVGLRLAGGND-----VGIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEE  481 (1027)
T ss_pred             ecC---CeeeeEeccCCc-----eeEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhcCCCCcE
Confidence            888   579999999998     799999999999999998 99999999999999999999999999999998764

>KOG3605|consensus

Probab=99.85  E-value=4.7e-21  Score=174.90  Aligned_cols=156  Identities=24%  Similarity=0.458  Sum_probs=135.7

Q ss_pred             EEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC--e
Q psy8436           6 KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS--H   83 (306)
Q Consensus         6 ~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~--~   83 (306)
                      +.|.|.|..++.||+.|+...++.-.+.++|.++..+|||+|+|.|.+||+|++|||.+|.++....+..++|...+  .
T Consensus       647 KEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~  726 (829)
T KOG3605|consen  647 KEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTA  726 (829)
T ss_pred             ceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccce
Confidence            57889999999999999999898878889999999999999999999999999999999999999999999999855  4


Q ss_pred             EEEEEEeCCCCCcccCcCCCCCCCCCCCCCCchhhhhcccccccccCCCCCCCChhhhhcCccceeeecccCcccccccc
Q psy8436          84 VEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEKSQTSN  163 (306)
Q Consensus        84 v~L~v~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (306)
                      |+|.|.+....                                                                     
T Consensus       727 VkltiV~cpPV---------------------------------------------------------------------  737 (829)
T KOG3605|consen  727 VKLNIVSCPPV---------------------------------------------------------------------  737 (829)
T ss_pred             EEEEEecCCCc---------------------------------------------------------------------
Confidence            88888764321                                                                     


Q ss_pred             cccccccccccccceecccCCCCCCcCccccCCCCCCCCCCCCCCCCcCCCCCCccceEEEEEEeCCCCCcccEEEEcCC
Q psy8436         164 CSKIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGR  243 (306)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k~~~~~~lG~~l~gg~  243 (306)
                                                                                .+|.|+|..-...|||++..  
T Consensus       738 ----------------------------------------------------------~~V~I~RPd~kyQLGFSVQN--  757 (829)
T KOG3605|consen  738 ----------------------------------------------------------TTVLIRRPDLRYQLGFSVQN--  757 (829)
T ss_pred             ----------------------------------------------------------eEEEeecccchhhccceeeC--
Confidence                                                                      25666666555679999963  


Q ss_pred             CCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         244 DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       244 ~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                             || |+++..||.|++-| +|+|-||+||||++|.-..|+..|++|..+-
T Consensus       758 -------Gi-ICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~pHekIV~lLs~aV  804 (829)
T KOG3605|consen  758 -------GI-ICSLLRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVQLLSNAV  804 (829)
T ss_pred             -------cE-eehhhcccchhccC-ceeeeeEEEECCceEEeccHHHHHHHHHHhh
Confidence                   44 78889999999965 9999999999999999999999999998653

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.75  E-value=1.4e-17  Score=118.59  Aligned_cols=81  Identities=20%  Similarity=0.426  Sum_probs=74.5

Q ss_pred             EEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEE
Q psy8436           7 VFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEI   86 (306)
Q Consensus         7 ~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L   86 (306)
                      +|.|.|...++|||++.++..+. ..++||..|.++|||+++| |++||+|++|||+++.++++++++.+++.++..|+|
T Consensus         1 ~v~l~k~~~~~lG~~l~~~~~~~-~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L   78 (81)
T PF00595_consen    1 QVTLEKSGNGPLGFTLRGGSDND-EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTL   78 (81)
T ss_dssp             EEEEEESTTSBSSEEEEEESTSS-SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEE
T ss_pred             CEEEEeCCCCCcCEEEEecCCCC-cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEE
Confidence            47899988899999999997653 3489999999999999999 999999999999999999999999999999889999


Q ss_pred             EEE
Q psy8436          87 VIC   89 (306)
Q Consensus        87 ~v~   89 (306)
                      +|+
T Consensus        79 ~V~   81 (81)
T PF00595_consen   79 TVQ   81 (81)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            884

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>KOG3550|consensus

Probab=99.66  E-value=3.1e-16  Score=118.78  Aligned_cols=85  Identities=31%  Similarity=0.464  Sum_probs=77.4

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV   84 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v   84 (306)
                      -|.|+|.| ..+||||.|.||..-.  ..|||+.|.|||.|++.|.|+-||++|+|||+++++-.|+.|+.+|+.+-+.|
T Consensus        91 prvvelpk-tdeglgfnvmggkeqn--spiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsv  167 (207)
T KOG3550|consen   91 PRVVELPK-TDEGLGFNVMGGKEQN--SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSV  167 (207)
T ss_pred             CceeecCc-cccccceeeccCcccC--CceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcE
Confidence            47889999 4679999999996543  68999999999999999999999999999999999999999999999998899


Q ss_pred             EEEEEeCC
Q psy8436          85 EIVICRNP   92 (306)
Q Consensus        85 ~L~v~r~~   92 (306)
                      .|+|+..+
T Consensus       168 klvvrytp  175 (207)
T KOG3550|consen  168 KLVVRYTP  175 (207)
T ss_pred             EEEEecCh
Confidence            99998654

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.64  E-value=1.4e-15  Score=108.25  Aligned_cols=78  Identities=31%  Similarity=0.575  Sum_probs=68.3

Q ss_pred             EEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCc
Q psy8436         223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQS  302 (306)
Q Consensus       223 ~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~  302 (306)
                      +|++.|.. ..+|||.+.++.+..  ..++||.+|.++|+|+++| |++||+|++|||+++.+++|++++.+|+..++ .
T Consensus         1 ~v~l~k~~-~~~lG~~l~~~~~~~--~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~-~   75 (81)
T PF00595_consen    1 QVTLEKSG-NGPLGFTLRGGSDND--EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASN-P   75 (81)
T ss_dssp             EEEEEEST-TSBSSEEEEEESTSS--SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTS-E
T ss_pred             CEEEEeCC-CCCcCEEEEecCCCC--cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCC-c
Confidence            47788863 589999999988742  2489999999999999999 99999999999999999999999999999887 5


Q ss_pred             eec
Q psy8436         303 SKL  305 (306)
Q Consensus       303 ~~l  305 (306)
                      +.|
T Consensus        76 v~L   78 (81)
T PF00595_consen   76 VTL   78 (81)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=99.63  E-value=5.7e-15  Score=137.33  Aligned_cols=75  Identities=23%  Similarity=0.420  Sum_probs=58.1

Q ss_pred             CceeEEEEecCCC-------CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEE
Q psy8436          16 NELGIYIERQDGG-------AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEI   86 (306)
Q Consensus        16 ~~lG~~i~gg~~~-------~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L   86 (306)
                      ..||+.+..-...       ....|++|..|.++|||+++| |+.||+|++|||+.+.+  +.+...++..  .+..+.|
T Consensus       234 ~~lGi~~~~~~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~--~~~~~~~l~~~~~g~~v~l  310 (428)
T TIGR02037       234 GWLGVTIQEVTSDLAKSLGLEKQRGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISS--FADLRRAIGTLKPGKKVTL  310 (428)
T ss_pred             CcCceEeecCCHHHHHHcCCCCCCceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEE
Confidence            4578877654210       012589999999999999999 99999999999999984  5666666654  4678999


Q ss_pred             EEEeCCC
Q psy8436          87 VICRNPD   93 (306)
Q Consensus        87 ~v~r~~~   93 (306)
                      +|.|+..
T Consensus       311 ~v~R~g~  317 (428)
T TIGR02037       311 GILRKGK  317 (428)
T ss_pred             EEEECCE
Confidence            9998653

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10139 serine endoprotease; Provisional

Probab=99.63  E-value=1.1e-14  Score=135.61  Aligned_cols=75  Identities=21%  Similarity=0.320  Sum_probs=58.3

Q ss_pred             CceeEEEEecCC------C-CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEE
Q psy8436          16 NELGIYIERQDG------G-AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEI   86 (306)
Q Consensus        16 ~~lG~~i~gg~~------~-~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L   86 (306)
                      .-||+.+..-..      + ....|++|..|.++|||+++| |+.||+|++|||+.+.  ++.+....+..  .++.+.|
T Consensus       267 ~~LGv~~~~l~~~~~~~lgl~~~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l  343 (455)
T PRK10139        267 GLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKL  343 (455)
T ss_pred             cceeEEEEECCHHHHHhcCCCCCCceEEEEECCCChHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEE
Confidence            357887754310      0 112589999999999999999 9999999999999999  56777777764  4778999


Q ss_pred             EEEeCCC
Q psy8436          87 VICRNPD   93 (306)
Q Consensus        87 ~v~r~~~   93 (306)
                      +|.|...
T Consensus       344 ~V~R~G~  350 (455)
T PRK10139        344 GLLRNGK  350 (455)
T ss_pred             EEEECCE
Confidence            9998653

>KOG3550|consensus

Probab=99.62  E-value=1e-15  Score=115.94  Aligned_cols=77  Identities=29%  Similarity=0.597  Sum_probs=70.7

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      .++.|+|.|..  ++|||.+.||++.   +.+|||++|.|||.|++.|+|+.||++|+|||+++++-.|+.|+++||.+.
T Consensus        90 hprvvelpktd--eglgfnvmggkeq---nspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~  164 (207)
T KOG3550|consen   90 HPRVVELPKTD--EGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAV  164 (207)
T ss_pred             CCceeecCccc--cccceeeccCccc---CCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhc
Confidence            35679999985  7999999999987   479999999999999999999999999999999999999999999999876


Q ss_pred             CC
Q psy8436         300 PQ  301 (306)
Q Consensus       300 ~~  301 (306)
                      +.
T Consensus       165 gs  166 (207)
T KOG3550|consen  165 GS  166 (207)
T ss_pred             Cc
Confidence            54

>PRK10942 serine endoprotease; Provisional

Probab=99.60  E-value=5.6e-14  Score=131.40  Aligned_cols=59  Identities=17%  Similarity=0.357  Sum_probs=50.6

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L~v~r~~~   93 (306)
                      .|++|..|.++|||+++| |+.||+|++|||+.+.+  +++....+...  ++.+.|+|.|+..
T Consensus       311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~G~  371 (473)
T PRK10942        311 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISS--FAALRAQVGTMPVGSKLTLGLLRDGK  371 (473)
T ss_pred             CceEEEEECCCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCe
Confidence            589999999999999999 99999999999999995  56666666543  6789999998753

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=99.60  E-value=1.1e-14  Score=135.79  Aligned_cols=58  Identities=21%  Similarity=0.228  Sum_probs=46.9

Q ss_pred             eEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHh--cCCCeEEEEEEeCCCC
Q psy8436          34 YLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALN--NKDSHVEIVICRNPDD   94 (306)
Q Consensus        34 i~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~--~~~~~v~L~v~r~~~~   94 (306)
                      .+|..|.++|||+++| ||.||+|++|||+.+.++  ++....+.  ..++.+.++|.|+.+.
T Consensus       128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~--~~l~~~v~~~~~g~~v~v~v~R~gk~  187 (449)
T PRK10779        128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDW--DAVRLALVSKIGDESTTITVAPFGSD  187 (449)
T ss_pred             ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhhccCCceEEEEEeCCcc
Confidence            4689999999999999 999999999999999965  44444433  3356899999997643

>KOG3551|consensus

Probab=99.51  E-value=5.5e-14  Score=122.09  Aligned_cols=87  Identities=32%  Similarity=0.422  Sum_probs=81.5

Q ss_pred             EEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEE
Q psy8436           6 KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVE   85 (306)
Q Consensus         6 ~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~   85 (306)
                      |+|.+.|-+.+||||+|.||+.|+  -.|+|++|.+|=+|++.+.|..||-||+|||.++..++|++|++.||.+|..|.
T Consensus        86 R~V~V~K~d~gGLGISIKGGreNk--MPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~  163 (506)
T KOG3551|consen   86 RRVRVVKQDAGGLGISIKGGRENK--MPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVL  163 (506)
T ss_pred             ceeEEEEecCCcceEEeecCcccC--CceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceee
Confidence            899999999999999999998886  789999999999999999999999999999999999999999999999999998


Q ss_pred             EEEEeCCCC
Q psy8436          86 IVICRNPDD   94 (306)
Q Consensus        86 L~v~r~~~~   94 (306)
                      |.|....+.
T Consensus       164 levKy~REv  172 (506)
T KOG3551|consen  164 LEVKYMREV  172 (506)
T ss_pred             eeeeeehhc
Confidence            888765544

>KOG3549|consensus

Probab=99.51  E-value=4.1e-14  Score=121.35  Aligned_cols=89  Identities=22%  Similarity=0.325  Sum_probs=82.5

Q ss_pred             CccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy8436           1 MEKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK   80 (306)
Q Consensus         1 ~~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~   80 (306)
                      ||..-|+|+|.|..-+|||++|.||..-+  -+++|++|.+.-.|+..|.|-+||-||.|||+.++.++|++++.+||++
T Consensus        51 ~~s~eRtVtirRQ~vGGlGLSIKGGaEHn--~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNA  128 (505)
T KOG3549|consen   51 MESKERTVTIRRQKVGGLGLSIKGGAEHN--LPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNA  128 (505)
T ss_pred             ccCCceeEEEEeeecCcceeeeccccccC--ccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhc
Confidence            67788999999999999999999995432  5799999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEeC
Q psy8436          81 DSHVEIVICRN   91 (306)
Q Consensus        81 ~~~v~L~v~r~   91 (306)
                      |+.|+|+|..-
T Consensus       129 GdeVtlTV~~l  139 (505)
T KOG3549|consen  129 GDEVTLTVKHL  139 (505)
T ss_pred             CCEEEEEeHhh
Confidence            99999999754

>TIGR00054 RIP metalloprotease RseP

Probab=99.50  E-value=3.1e-13  Score=124.98  Aligned_cols=58  Identities=17%  Similarity=0.358  Sum_probs=47.8

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNP   92 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~   92 (306)
                      .|.+|..|.++|||+++| |+.||+|++|||+.+.++  .+....+....+.+.+.+.|..
T Consensus       128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~--~dl~~~ia~~~~~v~~~I~r~g  185 (420)
T TIGR00054       128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGF--KDVRQQIADIAGEPMVEILAER  185 (420)
T ss_pred             CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhhcccceEEEEEec
Confidence            578899999999999999 999999999999999954  5555555544477888888853

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=99.46  E-value=1.2e-12  Score=93.07  Aligned_cols=81  Identities=31%  Similarity=0.544  Sum_probs=71.1

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV   84 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v   84 (306)
                      .+.+.+.+....+|||.+.+....  ..|++|..|.+++||+++| |++||+|++|||.++..+++.++..+++.....+
T Consensus         1 ~~~~~l~~~~~~~~G~~~~~~~~~--~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v   77 (82)
T cd00992           1 VRTVTLRKDPGGGLGFSLRGGKDS--GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEV   77 (82)
T ss_pred             CEEEEEEeCCCCCcCEEEeCcccC--CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeE
Confidence            367889997788999999876542  2579999999999999988 9999999999999999999999999999987677


Q ss_pred             EEEE
Q psy8436          85 EIVI   88 (306)
Q Consensus        85 ~L~v   88 (306)
                      .|+|
T Consensus        78 ~l~v   81 (82)
T cd00992          78 TLTV   81 (82)
T ss_pred             EEEE
Confidence            7776

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=99.40  E-value=7.5e-12  Score=89.46  Aligned_cols=83  Identities=24%  Similarity=0.432  Sum_probs=72.6

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV   84 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v   84 (306)
                      ...+.+.+.. ..|||.+..+....  .+++|..|.++++|+++| |++||+|++|||+.+.++++.+...+++.++..+
T Consensus         2 ~~~~~~~~~~-~~~G~~~~~~~~~~--~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~   77 (85)
T smart00228        2 PRLVELEKGG-GGLGFSLVGGKDEG--GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKV   77 (85)
T ss_pred             cEEEEEEECC-CcccEEEECCCCCC--CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            4567888866 89999998664322  579999999999999999 9999999999999999999999999999887789


Q ss_pred             EEEEEeC
Q psy8436          85 EIVICRN   91 (306)
Q Consensus        85 ~L~v~r~   91 (306)
                      .|++.|.
T Consensus        78 ~l~i~r~   84 (85)
T smart00228       78 TLTVLRG   84 (85)
T ss_pred             EEEEEeC
Confidence            9998875

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>KOG3553|consensus

Probab=99.33  E-value=5e-13  Score=94.07  Aligned_cols=85  Identities=14%  Similarity=0.199  Sum_probs=69.2

Q ss_pred             cEEEEEEeCC---CC-----ceeEEEEecCCC--------CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCC
Q psy8436           5 FKVFRVVKDD---SN-----ELGIYIERQDGG--------AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL   68 (306)
Q Consensus         5 ~~~v~l~r~~---~~-----~lG~~i~gg~~~--------~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~   68 (306)
                      ...|+|+|..   .+     -+||.|-||.+-        ..+.||||..|.+||||+.+| |+.+|.||.|||-+..-+
T Consensus        16 si~velHK~~~~d~~Gre~l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMv   94 (124)
T KOG3553|consen   16 SIRVELHKLRDYDQQGRENLILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMV   94 (124)
T ss_pred             EEEEEeeeehhhhcCCcEEEEEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEE
Confidence            3456676642   12     489999998321        134599999999999999999 999999999999999999


Q ss_pred             CHHHHHHHHhcCCCeEEEEEEeC
Q psy8436          69 TIQEAREALNNKDSHVEIVICRN   91 (306)
Q Consensus        69 ~~~~a~~~l~~~~~~v~L~v~r~   91 (306)
                      +|++|+..|++. ..++|.|.|.
T Consensus        95 THd~Avk~i~k~-~vl~mLVaR~  116 (124)
T KOG3553|consen   95 THDQAVKRITKE-EVLRMLVARQ  116 (124)
T ss_pred             EhHHHHHHhhHh-HHHHHHHHhh
Confidence            999999999985 5678888775

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=99.33  E-value=1.2e-11  Score=85.17  Aligned_cols=67  Identities=27%  Similarity=0.513  Sum_probs=60.4

Q ss_pred             ceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC-CeEEEEE
Q psy8436          17 ELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD-SHVEIVI   88 (306)
Q Consensus        17 ~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~-~~v~L~v   88 (306)
                      +|||.+.+...    .+++|..|.+++||+++| |++||+|++|||.++.+++++++..+|+... ..|.|+|
T Consensus         2 ~~G~~~~~~~~----~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136           2 GLGFSIRGGTE----GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CccEEEecCCC----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            68999987654    369999999999999988 9999999999999999999999999999875 6788876

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>KOG3551|consensus

Probab=99.32  E-value=4.1e-12  Score=110.60  Aligned_cols=81  Identities=31%  Similarity=0.423  Sum_probs=72.6

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.|.+.|... ++|||+|.||++..   ++|.|+.|.+|-+|++.+.|..||-||+|||.++.+.||+|||+.||++
T Consensus        83 ~~~R~V~V~K~d~-gGLGISIKGGreNk---MPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKra  158 (506)
T KOG3551|consen   83 EAERRVRVVKQDA-GGLGISIKGGRENK---MPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRA  158 (506)
T ss_pred             cccceeEEEEecC-CcceEEeecCcccC---CceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhh
Confidence            3447788888875 89999999999864   7999999999999999999999999999999999999999999999998


Q ss_pred             CCCce
Q psy8436         299 FPQSS  303 (306)
Q Consensus       299 ~~~~~  303 (306)
                      .+..+
T Consensus       159 GkeV~  163 (506)
T KOG3551|consen  159 GKEVL  163 (506)
T ss_pred             Cceee
Confidence            76543

>KOG3553|consensus

Probab=99.32  E-value=3.4e-12  Score=89.88  Aligned_cols=80  Identities=29%  Similarity=0.373  Sum_probs=65.7

Q ss_pred             cceEEEEEEeCC-----C--CCcccEEEEcCCCCCC-------CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCC
Q psy8436         219 LSMFTVTFQKGP-----G--QKSLGFSIVGGRDSPK-------GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLE  284 (306)
Q Consensus       219 ~~~~~v~l~k~~-----~--~~~lG~~l~gg~~~~~-------~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~  284 (306)
                      |-...|+|.|..     |  +--+||.|-||.|...       .+.||||.+|..||||+.+| |+.+|.||+|||.++.
T Consensus        14 clsi~velHK~~~~d~~Gre~l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfT   92 (124)
T KOG3553|consen   14 CLSIRVELHKLRDYDQQGRENLILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFT   92 (124)
T ss_pred             EEEEEEEeeeehhhhcCCcEEEEEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeE
Confidence            444567776653     1  1247999999988532       26799999999999999999 9999999999999999


Q ss_pred             CCCHHHHHHHHhhcC
Q psy8436         285 NKTHAEAIAMFKDIF  299 (306)
Q Consensus       285 ~~~~~eav~~Lk~~~  299 (306)
                      =+||.+|+..|++.+
T Consensus        93 MvTHd~Avk~i~k~~  107 (124)
T KOG3553|consen   93 MVTHDQAVKRITKEE  107 (124)
T ss_pred             EEEhHHHHHHhhHhH
Confidence            999999999998854

>KOG1892|consensus

Probab=99.31  E-value=6.6e-12  Score=119.83  Aligned_cols=91  Identities=23%  Similarity=0.429  Sum_probs=79.7

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCC-CCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDG-GAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK   80 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~-~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~   80 (306)
                      |-++.+|+|.|.  +|+|++|+.-.+ +.+.-||||++|.+||+|+.+|||..||++|+|||.+|.+.+.+.|..++-..
T Consensus       931 ~pei~~vtL~Kn--nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrt 1008 (1629)
T KOG1892|consen  931 EPEIITVTLKKN--NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRT 1008 (1629)
T ss_pred             CCceEEEEEecc--CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhcc
Confidence            346888999995  689999987644 33345999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEeCCCC
Q psy8436          81 DSHVEIVICRNPDD   94 (306)
Q Consensus        81 ~~~v~L~v~r~~~~   94 (306)
                      |..|.|.|+.....
T Consensus      1009 g~vV~leVaKqgAi 1022 (1629)
T KOG1892|consen 1009 GNVVHLEVAKQGAI 1022 (1629)
T ss_pred             CCeEEEehhhhhhH
Confidence            99999999876543

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=99.31  E-value=1.8e-11  Score=84.23  Aligned_cols=66  Identities=32%  Similarity=0.510  Sum_probs=59.0

Q ss_pred             cccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436         234 SLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL  305 (306)
Q Consensus       234 ~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l  305 (306)
                      +|||.+.+..+     .+++|..|.+++||+++| |++||+|++|||.++.+++++++..+|+..++..+.|
T Consensus         2 ~~G~~~~~~~~-----~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l   67 (70)
T cd00136           2 GLGFSIRGGTE-----GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTL   67 (70)
T ss_pred             CccEEEecCCC-----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEE
Confidence            58999987664     389999999999999877 9999999999999999999999999999988666655

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=99.27  E-value=8.1e-11  Score=83.56  Aligned_cols=74  Identities=45%  Similarity=0.689  Sum_probs=63.2

Q ss_pred             EEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC
Q psy8436         222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP  300 (306)
Q Consensus       222 ~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~  300 (306)
                      +.+.+.+.. ..+|||.+.+..+.   ..|++|..|.++++|+++| |++||+|++|||.++.++++.++..+|+....
T Consensus         2 ~~~~l~~~~-~~~~G~~~~~~~~~---~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~   75 (82)
T cd00992           2 RTVTLRKDP-GGGLGFSLRGGKDS---GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGD   75 (82)
T ss_pred             EEEEEEeCC-CCCcCEEEeCcccC---CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCC
Confidence            357777774 36899999876543   2489999999999999977 99999999999999999999999999998665

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=99.22  E-value=1.2e-10  Score=82.78  Aligned_cols=71  Identities=17%  Similarity=0.411  Sum_probs=57.9

Q ss_pred             ceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEEEEEeCCC
Q psy8436          17 ELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEIVICRNPD   93 (306)
Q Consensus        17 ~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L~v~r~~~   93 (306)
                      .||+.+......   .|++|..|.++|||+++| |++||+|++|||+.+.  +..+....+..  .+..|.|+|.|...
T Consensus         2 ~lGv~~~~~~~~---~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~~~~g~~v~l~v~R~g~   74 (82)
T PF13180_consen    2 GLGVTVQNLSDT---GGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVN--SSEDLVNILSKGKPGDTVTLTVLRDGE   74 (82)
T ss_dssp             E-SEEEEECSCS---SSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESS--SHHHHHHHHHCSSTTSEEEEEEEETTE
T ss_pred             EECeEEEEccCC---CeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            588888766542   479999999999999999 9999999999999997  56777777754  37789999999764

...

>KOG3549|consensus

Probab=99.18  E-value=4e-11  Score=103.19  Aligned_cols=80  Identities=25%  Similarity=0.410  Sum_probs=72.9

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...++|+|++.+ .+|||++|.||.+-.   .+++|+.|.++-+|+..|.|-+||-||+|||+.+...+|+|+|++||++
T Consensus        53 s~eRtVtirRQ~-vGGlGLSIKGGaEHn---~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNA  128 (505)
T KOG3549|consen   53 SKERTVTIRRQK-VGGLGLSIKGGAEHN---LPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNA  128 (505)
T ss_pred             CCceeEEEEeee-cCcceeeeccccccC---ccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhc
Confidence            446789998887 589999999999874   7999999999999999999999999999999999999999999999998


Q ss_pred             CCCc
Q psy8436         299 FPQS  302 (306)
Q Consensus       299 ~~~~  302 (306)
                      .+..
T Consensus       129 GdeV  132 (505)
T KOG3549|consen  129 GDEV  132 (505)
T ss_pred             CCEE
Confidence            7654

>KOG3571|consensus

Probab=99.17  E-value=9.9e-11  Score=105.28  Aligned_cols=90  Identities=22%  Similarity=0.344  Sum_probs=78.6

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC---
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK---   80 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~---   80 (306)
                      .|.+|.|.-+.-.-|||+|+|..+...+.||||.+|.++|+.+.+||+.+||.||.||.++.++++..+||.+||.+   
T Consensus       249 nIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~  328 (626)
T KOG3571|consen  249 NIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSR  328 (626)
T ss_pred             eEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhcc
Confidence            56788888876667999999975555556899999999999999999999999999999999999999999999986   


Q ss_pred             CCeEEEEEEeCCC
Q psy8436          81 DSHVEIVICRNPD   93 (306)
Q Consensus        81 ~~~v~L~v~r~~~   93 (306)
                      ...++|+|+...+
T Consensus       329 ~gPi~ltvAk~~D  341 (626)
T KOG3571|consen  329 PGPIKLTVAKCWD  341 (626)
T ss_pred             CCCeEEEEeeccC
Confidence            5569999987544

>KOG3571|consensus

Probab=99.16  E-value=8.7e-11  Score=105.62  Aligned_cols=81  Identities=32%  Similarity=0.595  Sum_probs=68.2

Q ss_pred             ccceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       218 ~~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      ...+.+|.|.-+. ..-|||+|+|-... .|+.||||.+|.++|+.|.+|+|.+||.||+||.+++++++..|||..||.
T Consensus       247 slnIITV~LnMe~-vnfLGiSivgqsn~-rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLRE  324 (626)
T KOG3571|consen  247 SLNIITVTLNMET-VNFLGISIVGQSNA-RGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLRE  324 (626)
T ss_pred             ceeEEEEEecccc-cccceeEeecccCc-CCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHH
Confidence            3567788886654 24599999984443 235799999999999999999999999999999999999999999999998


Q ss_pred             cCC
Q psy8436         298 IFP  300 (306)
Q Consensus       298 ~~~  300 (306)
                      +-.
T Consensus       325 aV~  327 (626)
T KOG3571|consen  325 AVS  327 (626)
T ss_pred             Hhc
Confidence            543

>KOG1892|consensus

Probab=99.14  E-value=1.1e-10  Score=111.60  Aligned_cols=79  Identities=27%  Similarity=0.530  Sum_probs=69.3

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .++.+|+|+|.   +|+|++|+..+..-....||||+.|.+||+|+.+|+|..||++|.|||+++.|++.+.|..++...
T Consensus       932 pei~~vtL~Kn---nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrt 1008 (1629)
T KOG1892|consen  932 PEIITVTLKKN---NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRT 1008 (1629)
T ss_pred             CceEEEEEecc---CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhcc
Confidence            56889999998   469999976555433358999999999999999999999999999999999999999999999876


Q ss_pred             CC
Q psy8436         299 FP  300 (306)
Q Consensus       299 ~~  300 (306)
                      .+
T Consensus      1009 g~ 1010 (1629)
T KOG1892|consen 1009 GN 1010 (1629)
T ss_pred             CC
Confidence            54

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=99.10  E-value=9e-10  Score=78.78  Aligned_cols=70  Identities=20%  Similarity=0.517  Sum_probs=60.8

Q ss_pred             CceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeEEEEEEeC
Q psy8436          16 NELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-DSHVEIVICRN   91 (306)
Q Consensus        16 ~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~v~L~v~r~   91 (306)
                      .+|||.+.-..     .+++|..|.+++||+++| |++||+|++|||..+.++++.++..+++.. +..+.|++.|.
T Consensus         2 ~~lG~~~~~~~-----~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988           2 GGIGLELKYDD-----GGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             eEEEEEEEEcC-----CeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            47899986432     469999999999999998 999999999999999999889999988764 67899999886

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=99.07  E-value=2.5e-09  Score=76.23  Aligned_cols=77  Identities=36%  Similarity=0.576  Sum_probs=62.9

Q ss_pred             EEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCC
Q psy8436         222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQ  301 (306)
Q Consensus       222 ~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~  301 (306)
                      ..+.+.+..  ..|||.+.......   .+++|..|.++++|+++| |++||+|++|||+.+.++++.++..+++..+. 
T Consensus         3 ~~~~~~~~~--~~~G~~~~~~~~~~---~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~-   75 (85)
T smart00228        3 RLVELEKGG--GGLGFSLVGGKDEG---GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGG-   75 (85)
T ss_pred             EEEEEEECC--CcccEEEECCCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC-
Confidence            356777774  67999997654321   489999999999999999 99999999999999999999999999988643 


Q ss_pred             ceec
Q psy8436         302 SSKL  305 (306)
Q Consensus       302 ~~~l  305 (306)
                      .+.|
T Consensus        76 ~~~l   79 (85)
T smart00228       76 KVTL   79 (85)
T ss_pred             eEEE
Confidence            4443

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>KOG3651|consensus

Probab=99.05  E-value=8.4e-10  Score=93.44  Aligned_cols=84  Identities=25%  Similarity=0.316  Sum_probs=75.6

Q ss_pred             EEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEE
Q psy8436           6 KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVE   85 (306)
Q Consensus         6 ~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~   85 (306)
                      .+|.|+|+..+-+||+|.||...-  +.+||..|..++||+++|+++-||.|++|||+++.+.+-.++..+++.+-+.|.
T Consensus         6 ~~v~ltKD~~nliGISIGGGapyC--PClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~   83 (429)
T KOG3651|consen    6 ETVELTKDEKNLIGISIGGGAPYC--PCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVK   83 (429)
T ss_pred             CcEEEeeccccceeEEecCCCCcC--CeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceE
Confidence            468999999888999999885432  679999999999999999999999999999999999999999999999988898


Q ss_pred             EEEEeC
Q psy8436          86 IVICRN   91 (306)
Q Consensus        86 L~v~r~   91 (306)
                      +.+-.-
T Consensus        84 IhyNKL   89 (429)
T KOG3651|consen   84 IHYNKL   89 (429)
T ss_pred             EEehhc
Confidence            887543

>KOG3552|consensus

Probab=99.00  E-value=3.5e-10  Score=108.07  Aligned_cols=80  Identities=19%  Similarity=0.407  Sum_probs=70.4

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      +.+.|.|++.|+..  |||.++.|      ..++|..|++|||+  .|.|++||+||+|||.++..++++.+++++|.|.
T Consensus        53 ~~~pr~vq~~r~~~--lGFgfvag------rPviVr~VT~GGps--~GKL~PGDQIl~vN~Epv~daprervIdlvRace  122 (1298)
T KOG3552|consen   53 RWEPRQVQLQRNAS--LGFGFVAG------RPVIVRFVTEGGPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACE  122 (1298)
T ss_pred             cCcchhhhhhcccc--ccceeecC------CceEEEEecCCCCc--cccccCCCeEEEecCcccccccHHHHHHHHHHHh
Confidence            44678899999765  55555544      46999999999999  6899999999999999999999999999999999


Q ss_pred             CeEEEEEEeC
Q psy8436          82 SHVEIVICRN   91 (306)
Q Consensus        82 ~~v~L~v~r~   91 (306)
                      ..|.|+|++.
T Consensus       123 ~sv~ltV~qP  132 (1298)
T KOG3552|consen  123 SSVNLTVCQP  132 (1298)
T ss_pred             hhcceEEecc
Confidence            9999999986

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=98.99  E-value=2.1e-09  Score=76.88  Aligned_cols=66  Identities=18%  Similarity=0.432  Sum_probs=55.6

Q ss_pred             CcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436         233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL  305 (306)
Q Consensus       233 ~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l  305 (306)
                      .+||+.+.-..      .+++|..|.++++|+++| |++||+|++|||+.+.++++.++..+++...+..+.|
T Consensus         2 ~~lG~~~~~~~------~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l   67 (85)
T cd00988           2 GGIGLELKYDD------GGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRL   67 (85)
T ss_pred             eEEEEEEEEcC------CeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEE
Confidence            36888885422      479999999999999987 9999999999999999998899999998766555544

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3606|consensus

Probab=98.96  E-value=1.9e-09  Score=89.89  Aligned_cols=86  Identities=23%  Similarity=0.411  Sum_probs=72.2

Q ss_pred             cEEEEEEeC-CCCceeEEEEecCC-------CCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy8436           5 FKVFRVVKD-DSNELGIYIERQDG-------GAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREA   76 (306)
Q Consensus         5 ~~~v~l~r~-~~~~lG~~i~gg~~-------~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~   76 (306)
                      -|+|.|.|- ....|||.|+.|..       -..-+||||+.+.|||.|+-.|.|-+.|+||+|||+.|.+.+.+++.++
T Consensus       159 HRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDM  238 (358)
T KOG3606|consen  159 HRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDM  238 (358)
T ss_pred             hhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHH
Confidence            366777775 44589999998721       1134699999999999999999999999999999999999999999999


Q ss_pred             HhcCCCeEEEEEEe
Q psy8436          77 LNNKDSHVEIVICR   90 (306)
Q Consensus        77 l~~~~~~v~L~v~r   90 (306)
                      +-.....+.++|.-
T Consensus       239 MvANshNLIiTVkP  252 (358)
T KOG3606|consen  239 MVANSHNLIITVKP  252 (358)
T ss_pred             HhhcccceEEEecc
Confidence            98887777777753

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=98.93  E-value=5.1e-09  Score=74.39  Aligned_cols=65  Identities=26%  Similarity=0.451  Sum_probs=50.0

Q ss_pred             cccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHh-hcCCCceec
Q psy8436         234 SLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK-DIFPQSSKL  305 (306)
Q Consensus       234 ~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk-~~~~~~~~l  305 (306)
                      .||+.+....+.    .|++|.+|.+++||+++| |++||+|++|||.++.+  ..+...+|. ..++..+.|
T Consensus         2 ~lGv~~~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~~~~g~~v~l   67 (82)
T PF13180_consen    2 GLGVTVQNLSDT----GGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNS--SEDLVNILSKGKPGDTVTL   67 (82)
T ss_dssp             E-SEEEEECSCS----SSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSS--HHHHHHHHHCSSTTSEEEE
T ss_pred             EECeEEEEccCC----CeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCC--HHHHHHHHHhCCCCCEEEE
Confidence            478888765542    589999999999999999 99999999999999954  578888884 445554443

...

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.91  E-value=1e-08  Score=72.21  Aligned_cols=59  Identities=17%  Similarity=0.309  Sum_probs=51.9

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L~v~r~~~   93 (306)
                      .|++|..|.++|||+++| |+.||+|++|||..+.  ++++...+|...  +..+.|++.|...
T Consensus        10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g~   70 (79)
T cd00991          10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPSTT   70 (79)
T ss_pred             CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECCE
Confidence            589999999999999999 9999999999999999  567888888764  6789999998653

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.82  E-value=3.2e-08  Score=69.60  Aligned_cols=57  Identities=19%  Similarity=0.493  Sum_probs=49.8

Q ss_pred             CeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeEEEEEEeCC
Q psy8436          33 PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-DSHVEIVICRNP   92 (306)
Q Consensus        33 gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~v~L~v~r~~   92 (306)
                      .++|..|.++++|++.| |+.||+|++|||..+.  +++++..+|... +..+.|++.|..
T Consensus        13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~~~~l~v~r~~   70 (79)
T cd00989          13 EPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVERNG   70 (79)
T ss_pred             CcEEEeECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHHCCCceEEEEEEECC
Confidence            48899999999999999 9999999999999999  567888888765 568899998864

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG0609|consensus

Probab=98.81  E-value=1.7e-08  Score=92.24  Aligned_cols=86  Identities=27%  Similarity=0.470  Sum_probs=78.1

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      .-++.|.+.|+.+..||.++.-....    -+||..|..||.|++.|.|++||+|++|||+++.+....++..+|+.+.+
T Consensus       121 ~~vriv~i~k~~~eplG~Tik~~e~~----~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G  196 (542)
T KOG0609|consen  121 EAVRIVRIVKNTGEPLGATIRVEEDT----KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRG  196 (542)
T ss_pred             ceeEEEEEeecCCCccceEEEeccCC----ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCC
Confidence            34789999998899999999976553    39999999999999999999999999999999999999999999999988


Q ss_pred             eEEEEEEeCC
Q psy8436          83 HVEIVICRNP   92 (306)
Q Consensus        83 ~v~L~v~r~~   92 (306)
                      .++++|.-..
T Consensus       197 ~itfkiiP~~  206 (542)
T KOG0609|consen  197 SITFKIIPSY  206 (542)
T ss_pred             cEEEEEcccc
Confidence            9999997553

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=98.80  E-value=3.3e-08  Score=69.73  Aligned_cols=67  Identities=21%  Similarity=0.438  Sum_probs=51.7

Q ss_pred             ceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCC
Q psy8436          17 ELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNP   92 (306)
Q Consensus        17 ~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~   92 (306)
                      .||+.+....     .+++|..|.++|+|+++| |++||+|++|||..+.+  +.++...+ ..+..+.|++.|..
T Consensus         2 ~~G~~~~~~~-----~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g   68 (80)
T cd00990           2 YLGLTLDKEE-----GLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDD   68 (80)
T ss_pred             cccEEEEccC-----CcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECC
Confidence            3677775321     369999999999999999 99999999999999985  44443333 24568899998864

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3542|consensus

Probab=98.78  E-value=7.3e-09  Score=96.48  Aligned_cols=82  Identities=28%  Similarity=0.485  Sum_probs=71.8

Q ss_pred             ccceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       218 ~~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      ....+.|.|.|..-...|-|.+.||.+.-   .||||.+|.||+-|++.| |+.||+||+|||+++++++...|.++|++
T Consensus       533 KAK~RqviLtk~sre~pl~f~L~GGsEkG---fgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrn  608 (1283)
T KOG3542|consen  533 KAKPRQVILTKASREDPLMFRLVGGSEKG---FGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRN  608 (1283)
T ss_pred             cccceeEEEecccccCCceeEeccCcccc---ceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcC
Confidence            45668899998655578999999999863   689999999999999999 99999999999999999999999999998


Q ss_pred             cCCCce
Q psy8436         298 IFPQSS  303 (306)
Q Consensus       298 ~~~~~~  303 (306)
                      .-.-.+
T Consensus       609 nthLtl  614 (1283)
T KOG3542|consen  609 NTHLTL  614 (1283)
T ss_pred             CceEEE
Confidence            654433

>KOG3552|consensus

Probab=98.77  E-value=1e-08  Score=98.32  Aligned_cols=72  Identities=29%  Similarity=0.547  Sum_probs=62.2

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      .++.|.+++..   .|||.++.|.       +++|..|.+|||+.  |+|++|||||+|||.++.+.+++.+++++|.+.
T Consensus        55 ~pr~vq~~r~~---~lGFgfvagr-------PviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace  122 (1298)
T KOG3552|consen   55 EPRQVQLQRNA---SLGFGFVAGR-------PVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACE  122 (1298)
T ss_pred             cchhhhhhccc---cccceeecCC-------ceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHh
Confidence            35678888874   5777777663       79999999999995  889999999999999999999999999999987


Q ss_pred             CCce
Q psy8436         300 PQSS  303 (306)
Q Consensus       300 ~~~~  303 (306)
                      .+..
T Consensus       123 ~sv~  126 (1298)
T KOG3552|consen  123 SSVN  126 (1298)
T ss_pred             hhcc
Confidence            6643

>KOG4371|consensus

Probab=98.72  E-value=5.1e-08  Score=94.74  Aligned_cols=169  Identities=26%  Similarity=0.399  Sum_probs=122.4

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV   84 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v   84 (306)
                      +..|++.|.+ +.||..++.....     +.|+...-.+.--+-. |++||.++.+||+-+++.-|.+|+.+++..++.|
T Consensus      1148 ~i~~~~~r~~-~~l~~~~a~~~~~-----~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~ 1220 (1332)
T KOG4371|consen 1148 VIDVELDRNE-GSLGVQIASLSGR-----VCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRV 1220 (1332)
T ss_pred             cccccCCCCC-CCCCceeccCccc-----eehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhccCceE
Confidence            3456677765 6899998754332     5677766555555555 9999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCCcccCcCCCCCCCCCCCCCCchhhhhcccccccccCCCCCCCChhhhhcCccceeeecccCccccccccc
Q psy8436          85 EIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEKSQTSNC  164 (306)
Q Consensus        85 ~L~v~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (306)
                      .|-|.|.+..+........                                                           . 
T Consensus      1221 ~~~~~r~~~~~~d~~~~s~-----------------------------------------------------------~- 1240 (1332)
T KOG4371|consen 1221 VLGVQRPPPAYSDQHHASS-----------------------------------------------------------T- 1240 (1332)
T ss_pred             EEEeecCCcccccchhhhh-----------------------------------------------------------h-
Confidence            9999997654311000000                                                           0 


Q ss_pred             ccccccccccccceecccCCCCCCcCccccCCCCCCCCCCCCCCCCcCCCCCCccceEEEEEEeCCCCCcccEEEEcCCC
Q psy8436         165 SKIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRD  244 (306)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k~~~~~~lG~~l~gg~~  244 (306)
                                                                         +...-...+.+.+.+ ..++|+.+.-..-
T Consensus      1241 ---------------------------------------------------~~~~~l~~~~~~~~p-~~~~~~~~~~~~~ 1268 (1332)
T KOG4371|consen 1241 ---------------------------------------------------SASAPLISVMLLKKP-MATLGLSLAKRTM 1268 (1332)
T ss_pred             ---------------------------------------------------cccchhhhheeeecc-cccccccccccCc
Confidence                                                               000011224444444 3689998865444


Q ss_pred             CCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436         245 SPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK  296 (306)
Q Consensus       245 ~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk  296 (306)
                      +    .|+||..+..+++|...|.+|+||++...+|+++.+.+-.+..+.++
T Consensus      1269 s----~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~ 1316 (1332)
T KOG4371|consen 1269 S----DGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLK 1316 (1332)
T ss_pred             C----CceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhh
Confidence            3    58999999999999989999999999999999999988776666665

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=98.69  E-value=1e-07  Score=68.70  Aligned_cols=58  Identities=26%  Similarity=0.522  Sum_probs=49.6

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEEEEEeCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEIVICRNP   92 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L~v~r~~   92 (306)
                      .|++|..|.+++||+++| |+.||+|++|||+.+.+  ..+...++...  +..+.|.+.|+.
T Consensus        24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~--~~~~~~~l~~~~~~~~i~l~v~r~g   83 (90)
T cd00987          24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKS--VADLRRALAELKPGDKVTLTVLRGG   83 (90)
T ss_pred             CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECC
Confidence            479999999999999999 99999999999999985  45666666654  678999998865

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=98.68  E-value=1.5e-07  Score=66.30  Aligned_cols=58  Identities=17%  Similarity=0.316  Sum_probs=49.4

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L~v~r~~~   93 (306)
                      .|++|..|.++|||+. | |+.||+|++|||..+.  ++++...++..  .+..+.|++.|...
T Consensus         8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~g~   67 (79)
T cd00986           8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKREEK   67 (79)
T ss_pred             cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            4799999999999986 7 9999999999999998  56778888874  36689999988654

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=98.67  E-value=1.4e-07  Score=86.64  Aligned_cols=79  Identities=24%  Similarity=0.484  Sum_probs=63.8

Q ss_pred             CCCceeEEEEecCC-CCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc-CCCeEEEEEEeC
Q psy8436          14 DSNELGIYIERQDG-GAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN-KDSHVEIVICRN   91 (306)
Q Consensus        14 ~~~~lG~~i~gg~~-~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~-~~~~v~L~v~r~   91 (306)
                      ...|+|+.+.-... ++...+++|..|.++|||+++| |+.||+|++|||+++.+++..++..+|+. .+..|.|+|.|.
T Consensus        83 ~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~  161 (389)
T PLN00049         83 AVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRG  161 (389)
T ss_pred             CceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEEC
Confidence            34578888864332 1112379999999999999999 99999999999999999998898888875 466899999886


Q ss_pred             CC
Q psy8436          92 PD   93 (306)
Q Consensus        92 ~~   93 (306)
                      ..
T Consensus       162 g~  163 (389)
T PLN00049        162 PE  163 (389)
T ss_pred             CE
Confidence            53

>TIGR00225 prc C-terminal peptidase (prc)

Probab=98.65  E-value=1.6e-07  Score=84.73  Aligned_cols=73  Identities=25%  Similarity=0.449  Sum_probs=61.5

Q ss_pred             CCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc-CCCeEEEEEEeCCC
Q psy8436          15 SNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN-KDSHVEIVICRNPD   93 (306)
Q Consensus        15 ~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~-~~~~v~L~v~r~~~   93 (306)
                      -.++|+.+....     .+++|..|.++|||+++| |+.||+|++|||+.+.+++..++..+++. .+..+.|+|.|...
T Consensus        50 ~~~lG~~~~~~~-----~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~  123 (334)
T TIGR00225        50 LEGIGIQVGMDD-----GEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGK  123 (334)
T ss_pred             eEEEEEEEEEEC-----CEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCC
Confidence            346888886432     359999999999999999 99999999999999999887888888866 46789999998753

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>KOG3542|consensus

Probab=98.62  E-value=6.3e-08  Score=90.40  Aligned_cols=88  Identities=18%  Similarity=0.331  Sum_probs=76.2

Q ss_pred             ccEEEEEEe-CCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           4 QFKVFRVVK-DDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         4 ~~~~v~l~r-~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      ..|.|.|+| .....|=|.+.||...+  -||||..|.||+-|+++| |+-||+||+|||++.++.+...|.++|+.. .
T Consensus       535 K~RqviLtk~sre~pl~f~L~GGsEkG--fgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnn-t  610 (1283)
T KOG3542|consen  535 KPRQVILTKASREDPLMFRLVGGSEKG--FGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNN-T  610 (1283)
T ss_pred             cceeEEEecccccCCceeEeccCcccc--ceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCC-c
Confidence            468899998 45568999999997654  689999999999999999 999999999999999999999999999987 5


Q ss_pred             eEEEEEEeCCCCC
Q psy8436          83 HVEIVICRNPDDA   95 (306)
Q Consensus        83 ~v~L~v~r~~~~~   95 (306)
                      .++|+|..+.-.+
T Consensus       611 hLtltvKtNvfvf  623 (1283)
T KOG3542|consen  611 HLTLTVKTNVFVF  623 (1283)
T ss_pred             eEEEEEecceeeH
Confidence            6788887654433

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=98.61  E-value=1.9e-07  Score=85.88  Aligned_cols=73  Identities=23%  Similarity=0.407  Sum_probs=65.0

Q ss_pred             CCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeEEEEEEeC
Q psy8436          14 DSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-DSHVEIVICRN   91 (306)
Q Consensus        14 ~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~v~L~v~r~   91 (306)
                      .-+|+|+.+.-...    .++.|.++.+++||+++| |++||+|++|||.++.+++..+|+..++.. |..|+|++.|.
T Consensus        98 ~~~GiG~~i~~~~~----~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~  171 (406)
T COG0793          98 EFGGIGIELQMEDI----GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA  171 (406)
T ss_pred             cccceeEEEEEecC----CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence            44688898886553    359999999999999999 999999999999999999999999999987 66899999996

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.60  E-value=1.6e-07  Score=66.10  Aligned_cols=52  Identities=21%  Similarity=0.354  Sum_probs=44.2

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC-CCcee
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF-PQSSK  304 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~-~~~~~  304 (306)
                      .|++|..|.++++|+++| |++||+|++|||.++.+  ++++..+|.... +..+.
T Consensus        10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~--~~d~~~~l~~~~~g~~v~   62 (79)
T cd00991          10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITT--LEDFMEALKPTKPGEVIT   62 (79)
T ss_pred             CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCC--HHHHHHHHhcCCCCCEEE
Confidence            589999999999999988 99999999999999985  578888888753 44443

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3605|consensus

Probab=98.59  E-value=4.7e-08  Score=90.81  Aligned_cols=81  Identities=28%  Similarity=0.414  Sum_probs=68.7

Q ss_pred             ceEEEEEEeCCCCCcccEEEEc-CCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVG-GRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~g-g~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .++.|.+.|.+| +.||+-|+. |..+-+  --++|..+..+|||+++|+|-.||||++|||.++.|++..-...+||+.
T Consensus       645 ~qKEVvv~K~kG-EiLGVViVESGWGSmL--PTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~  721 (829)
T KOG3605|consen  645 NQKEVVLEKHKG-EILGVVIVESGWGSIL--PTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGL  721 (829)
T ss_pred             ccceeeeecccC-ceeeEEEEecCccccc--hHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcc
Confidence            357888888887 789998853 554432  1367899999999999999999999999999999999999999999999


Q ss_pred             CCCce
Q psy8436         299 FPQSS  303 (306)
Q Consensus       299 ~~~~~  303 (306)
                      ++++.
T Consensus       722 KnQT~  726 (829)
T KOG3605|consen  722 KNQTA  726 (829)
T ss_pred             cccce
Confidence            98864

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.57  E-value=2.6e-07  Score=64.87  Aligned_cols=52  Identities=19%  Similarity=0.344  Sum_probs=43.6

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCcee
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSK  304 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~  304 (306)
                      .+++|..|.++++|++.| |++||+|++|||.++.+  ++++..+|+...+..+.
T Consensus        12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~--~~~~~~~l~~~~~~~~~   63 (79)
T cd00989          12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKS--WEDLVDAVQENPGKPLT   63 (79)
T ss_pred             cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHHCCCceEE
Confidence            368999999999999988 99999999999999975  57888888876544443

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG0609|consensus

Probab=98.55  E-value=2.3e-07  Score=85.04  Aligned_cols=79  Identities=28%  Similarity=0.424  Sum_probs=68.3

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      ..+.|.+.|.-+ ..||.++.-..+     ..+||.+|..||.|++.|.|++||.|++|||+++.+....++..+|+++.
T Consensus       122 ~vriv~i~k~~~-eplG~Tik~~e~-----~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~  195 (542)
T KOG0609|consen  122 AVRIVRIVKNTG-EPLGATIRVEED-----TKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSR  195 (542)
T ss_pred             eeEEEEEeecCC-CccceEEEeccC-----CccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCC
Confidence            356788888854 789999976553     25899999999999999999999999999999999999999999999988


Q ss_pred             CCceec
Q psy8436         300 PQSSKL  305 (306)
Q Consensus       300 ~~~~~l  305 (306)
                       +++++
T Consensus       196 -G~itf  200 (542)
T KOG0609|consen  196 -GSITF  200 (542)
T ss_pred             -CcEEE
Confidence             55543

>KOG3606|consensus

Probab=98.55  E-value=1.3e-07  Score=79.21  Aligned_cols=77  Identities=29%  Similarity=0.438  Sum_probs=64.9

Q ss_pred             EEEEEEeCCCCCcccEEEEcCCCCCC---C---CCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy8436         222 FTVTFQKGPGQKSLGFSIVGGRDSPK---G---NLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMF  295 (306)
Q Consensus       222 ~~v~l~k~~~~~~lG~~l~gg~~~~~---~---~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~L  295 (306)
                      +.|.|.|-.....|||.|+.|.....   |   --||||+++.|||.|+..|-|-+.|++|||||+.|.|.|..|+..++
T Consensus       160 RRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMM  239 (358)
T KOG3606|consen  160 RRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMM  239 (358)
T ss_pred             hheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHH
Confidence            46777776666789999987765321   1   35899999999999999999999999999999999999999999987


Q ss_pred             hhc
Q psy8436         296 KDI  298 (306)
Q Consensus       296 k~~  298 (306)
                      -..
T Consensus       240 vAN  242 (358)
T KOG3606|consen  240 VAN  242 (358)
T ss_pred             hhc
Confidence            544

>KOG3651|consensus

Probab=98.54  E-value=3.2e-07  Score=78.04  Aligned_cols=74  Identities=31%  Similarity=0.529  Sum_probs=63.4

Q ss_pred             EEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC
Q psy8436         223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP  300 (306)
Q Consensus       223 ~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~  300 (306)
                      +|+|.|.. .+-+|++|-||...-   -=+||-+|..+.||+++|+|+-||.|++|||+++.|.+..++..+|+-+.+
T Consensus         7 ~v~ltKD~-~nliGISIGGGapyC---PClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~   80 (429)
T KOG3651|consen    7 TVELTKDE-KNLIGISIGGGAPYC---PCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLN   80 (429)
T ss_pred             cEEEeecc-ccceeEEecCCCCcC---CeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhcc
Confidence            68898885 356799997776531   248999999999999999999999999999999999999999999987654

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=98.53  E-value=3.6e-07  Score=64.34  Aligned_cols=44  Identities=25%  Similarity=0.307  Sum_probs=37.7

Q ss_pred             ccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCC
Q psy8436         235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN  285 (306)
Q Consensus       235 lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~  285 (306)
                      ||+.+....      .+++|..|.++++|+++| |++||+|++|||..+.+
T Consensus         3 ~G~~~~~~~------~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~   46 (80)
T cd00990           3 LGLTLDKEE------GLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA   46 (80)
T ss_pred             ccEEEEccC------CcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH
Confidence            677774321      479999999999999998 99999999999999876

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PRK11186 carboxy-terminal protease; Provisional

Probab=98.52  E-value=3.7e-07  Score=88.34  Aligned_cols=71  Identities=18%  Similarity=0.387  Sum_probs=59.2

Q ss_pred             CceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECC-----EeCCCCCHHHHHHHHhcC-CCeEEEEEE
Q psy8436          16 NELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVND-----KRLKGLTIQEAREALNNK-DSHVEIVIC   89 (306)
Q Consensus        16 ~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG-----~~l~~~~~~~a~~~l~~~-~~~v~L~v~   89 (306)
                      .|+|+.+....     .+++|..|.|||||++++.|++||+|++|||     .++.+++.++++.+|+.. |..|+|+|.
T Consensus       244 ~GIGa~l~~~~-----~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~  318 (667)
T PRK11186        244 EGIGAVLQMDD-----DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEIL  318 (667)
T ss_pred             eEEEEEEEEeC-----CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEE
Confidence            47788876432     2589999999999999844999999999994     467789999999999976 668999998


Q ss_pred             eC
Q psy8436          90 RN   91 (306)
Q Consensus        90 r~   91 (306)
                      |.
T Consensus       319 r~  320 (667)
T PRK11186        319 PA  320 (667)
T ss_pred             eC
Confidence            84

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=98.49  E-value=4.9e-07  Score=83.06  Aligned_cols=72  Identities=26%  Similarity=0.287  Sum_probs=56.4

Q ss_pred             CcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436         233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL  305 (306)
Q Consensus       233 ~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l  305 (306)
                      .++|+.+...........+++|..|.++|||+++| |++||+|++|||+++.+++..++..+|+...+..+.|
T Consensus        85 ~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~l  156 (389)
T PLN00049         85 TGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVEL  156 (389)
T ss_pred             eEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEE
Confidence            56888875322210001379999999999999999 9999999999999999999999999998766666554

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=98.46  E-value=3.8e-07  Score=83.83  Aligned_cols=69  Identities=20%  Similarity=0.268  Sum_probs=61.6

Q ss_pred             CCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceecC
Q psy8436         232 QKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKLS  306 (306)
Q Consensus       232 ~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l~  306 (306)
                      .+++|+.+....+     .+++|.++.+++||+++| |++||+|+.|||.++.+++..+|+..|+..++..++|+
T Consensus        99 ~~GiG~~i~~~~~-----~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~  167 (406)
T COG0793          99 FGGIGIELQMEDI-----GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLT  167 (406)
T ss_pred             ccceeEEEEEecC-----CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEE
Confidence            3678998876553     378999999999999999 99999999999999999999999999999998888773

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=98.45  E-value=1.2e-06  Score=75.71  Aligned_cols=72  Identities=14%  Similarity=0.235  Sum_probs=57.7

Q ss_pred             ceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEEEEEeCCC
Q psy8436          17 ELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEIVICRNPD   93 (306)
Q Consensus        17 ~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L~v~r~~~   93 (306)
                      .+|+...-...  ...|+.|..+.++++|++.| |+.||+|++|||+++.  +.+++.+++...  ++.+.|+|.|+..
T Consensus       178 ~lgi~p~~~~g--~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~--~~~~~~~~l~~~~~~~~v~l~V~R~G~  251 (259)
T TIGR01713       178 YIRLSPVMKND--KLEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLR--DPEQAFQALQMLREETNLTLTVERDGQ  251 (259)
T ss_pred             eEeEEEEEeCC--ceeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCeEEEEEEECCE
Confidence            46666643322  23689999999999999999 9999999999999999  456777777663  4689999999764

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>TIGR00225 prc C-terminal peptidase (prc)

Probab=98.44  E-value=4.7e-07  Score=81.66  Aligned_cols=66  Identities=21%  Similarity=0.360  Sum_probs=55.2

Q ss_pred             CcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436         233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL  305 (306)
Q Consensus       233 ~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l  305 (306)
                      .++|+.+....      .+++|..|.+++||+++| |++||+|++|||.++.+++..++..+|+...+..+.|
T Consensus        51 ~~lG~~~~~~~------~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l  116 (334)
T TIGR00225        51 EGIGIQVGMDD------GEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSL  116 (334)
T ss_pred             EEEEEEEEEEC------CEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEE
Confidence            46888886422      379999999999999999 9999999999999999998888888887766665544

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>KOG3938|consensus

Probab=98.33  E-value=1e-06  Score=73.69  Aligned_cols=82  Identities=24%  Similarity=0.357  Sum_probs=69.7

Q ss_pred             EEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCe
Q psy8436           6 KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSH   83 (306)
Q Consensus         6 ~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~   83 (306)
                      +.|.+.|. ...||++|+.+..+.    .||+.|.++|.-++--.+++||.|-+|||.++.++.|-++..+|+..  +..
T Consensus       128 kEv~v~Ks-edalGlTITDNG~Gy----AFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~  202 (334)
T KOG3938|consen  128 KEVEVVKS-EDALGLTITDNGAGY----AFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGET  202 (334)
T ss_pred             eeEEEEec-ccccceEEeeCCcce----eeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCe
Confidence            56778885 459999999664443    89999999999999999999999999999999999999999999987  556


Q ss_pred             EEEEEEeCC
Q psy8436          84 VEIVICRNP   92 (306)
Q Consensus        84 v~L~v~r~~   92 (306)
                      .+|.+..++
T Consensus       203 ftlrLiePk  211 (334)
T KOG3938|consen  203 FTLRLIEPK  211 (334)
T ss_pred             eEEEeeccc
Confidence            777666543

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=98.33  E-value=2.3e-06  Score=60.14  Aligned_cols=51  Identities=29%  Similarity=0.527  Sum_probs=41.9

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc-CCCcee
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI-FPQSSK  304 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~-~~~~~~  304 (306)
                      .|++|..|.++++|+. | |++||+|++|||..+.+  +++...+|+.. ++..+.
T Consensus         8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~   59 (79)
T cd00986           8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVK   59 (79)
T ss_pred             cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEE
Confidence            4899999999999986 7 99999999999999975  57888888763 444443

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PRK10942 serine endoprotease; Provisional

Probab=98.31  E-value=3.2e-06  Score=79.50  Aligned_cols=59  Identities=27%  Similarity=0.460  Sum_probs=53.3

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~   93 (306)
                      .|++|..|.++|+|+++| |++||+|++|||+.+.  +.++..++++..+..+.|+|.|...
T Consensus       408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~--s~~dl~~~l~~~~~~v~l~V~R~g~  466 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVK--NIAELRKILDSKPSVLALNIQRGDS  466 (473)
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECCE
Confidence            479999999999999999 9999999999999999  5688888998877789999998754

>PRK11186 carboxy-terminal protease; Provisional

Probab=98.31  E-value=1.2e-06  Score=84.75  Aligned_cols=67  Identities=19%  Similarity=0.289  Sum_probs=55.8

Q ss_pred             CcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECC-----EeCCCCCHHHHHHHHhhcCCCceec
Q psy8436         233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING-----VPLENKTHAEAIAMFKDIFPQSSKL  305 (306)
Q Consensus       233 ~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG-----~~v~~~~~~eav~~Lk~~~~~~~~l  305 (306)
                      .|+|+.+.-..      .+++|..|.+||||+++++|++||+|++||+     +++.+++..+++.+|+.-.+..+.|
T Consensus       244 ~GIGa~l~~~~------~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~L  315 (667)
T PRK11186        244 EGIGAVLQMDD------DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRL  315 (667)
T ss_pred             eEEEEEEEEeC------CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEE
Confidence            56788875422      3689999999999999855999999999994     4677899999999999888877766

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=98.31  E-value=2.1e-06  Score=61.71  Aligned_cols=52  Identities=25%  Similarity=0.430  Sum_probs=42.8

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC-CCcee
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF-PQSSK  304 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~-~~~~~  304 (306)
                      .|++|..|.++++|+++| |++||+|++|||+.+.++  .++..+++... +..+.
T Consensus        24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~--~~~~~~l~~~~~~~~i~   76 (90)
T cd00987          24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSV--ADLRRALAELKPGDKVT   76 (90)
T ss_pred             CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEE
Confidence            489999999999999988 999999999999999764  57777776653 34433

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=98.28  E-value=1.9e-05  Score=61.39  Aligned_cols=86  Identities=13%  Similarity=0.219  Sum_probs=57.7

Q ss_pred             cccEEEEEEeC----CCCceeEEEEecCCC-CcCCCeEEEEeCCCChhcccCCCCC-CCEEEEECCEeCCCCCHHHHHHH
Q psy8436           3 KQFKVFRVVKD----DSNELGIYIERQDGG-AHFSPYLISHIEPGGAIHRDGRFHV-GDELIKVNDKRLKGLTIQEAREA   76 (306)
Q Consensus         3 ~~~~~v~l~r~----~~~~lG~~i~gg~~~-~~~~gi~V~~V~~gs~A~~~G~L~~-GD~Il~VNG~~l~~~~~~~a~~~   76 (306)
                      .++|.|.+...    ..+-||++|.-.... ....++-|-+|.|+|||+++| |++ .|-|+.+++..+.+.  ++...+
T Consensus         9 ~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~--~~l~~~   85 (138)
T PF04495_consen    9 QTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDE--DDLFEL   85 (138)
T ss_dssp             SSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--ST--CHHHHH
T ss_pred             CeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCH--HHHHHH
Confidence            35677777552    246889999877443 334678899999999999999 998 699999999999854  466666


Q ss_pred             HhcC-CCeEEEEEEeC
Q psy8436          77 LNNK-DSHVEIVICRN   91 (306)
Q Consensus        77 l~~~-~~~v~L~v~r~   91 (306)
                      +++. +..+.|.|...
T Consensus        86 v~~~~~~~l~L~Vyns  101 (138)
T PF04495_consen   86 VEANENKPLQLYVYNS  101 (138)
T ss_dssp             HHHTTTS-EEEEEEET
T ss_pred             HHHcCCCcEEEEEEEC
Confidence            6665 56789998753

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>PRK10139 serine endoprotease; Provisional

Probab=98.28  E-value=2.7e-06  Score=79.60  Aligned_cols=59  Identities=25%  Similarity=0.418  Sum_probs=53.0

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~   93 (306)
                      .|++|..|.++|||+++| |+.||+|++|||+.+.  ++++...+++..+..+.|+|.|+..
T Consensus       390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~  448 (455)
T PRK10139        390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVRGNE  448 (455)
T ss_pred             CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECCE
Confidence            479999999999999999 9999999999999998  5788888888776789999998764

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.25  E-value=3.3e-06  Score=78.83  Aligned_cols=59  Identities=22%  Similarity=0.473  Sum_probs=52.5

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L~v~r~~~   93 (306)
                      .|++|..|.++|||+++| |++||+|++|||+.+.  +.++..++++..  ++.+.|+|.|...
T Consensus       362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~--s~~d~~~~l~~~~~g~~v~l~v~R~g~  422 (428)
T TIGR02037       362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVS--SVAELRKVLDRAKKGGRVALLILRGGA  422 (428)
T ss_pred             CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            589999999999999999 9999999999999998  567888888763  6789999999754

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=98.20  E-value=5e-06  Score=75.45  Aligned_cols=59  Identities=22%  Similarity=0.392  Sum_probs=51.1

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L~v~r~~~   93 (306)
                      .|++|..|.++|||+++| |+.||+|++|||+.+.  ++++..+.++.  .++.+.|+|.|+..
T Consensus       278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~g~  338 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVI--GAEELMDRIAETRPGSKVMVTVLRQGK  338 (351)
T ss_pred             ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            489999999999999999 9999999999999998  45677677764  47789999998753

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>TIGR00054 RIP metalloprotease RseP

Probab=98.18  E-value=5.5e-06  Score=76.95  Aligned_cols=60  Identities=18%  Similarity=0.397  Sum_probs=52.1

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeEEEEEEeCCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-DSHVEIVICRNPDD   94 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~v~L~v~r~~~~   94 (306)
                      .+++|..|.++|||+++| |++||+|++|||+++.  ++++....++.. ++.+.|+|.|+...
T Consensus       203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~~  263 (420)
T TIGR00054       203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLR--SWTDFVSAVKENPGKSMDIKVERNGET  263 (420)
T ss_pred             cCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCceEEEEEECCEE
Confidence            368999999999999999 9999999999999998  568888888764 55789999987643

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=98.18  E-value=7.4e-06  Score=74.81  Aligned_cols=49  Identities=24%  Similarity=0.413  Sum_probs=41.5

Q ss_pred             EEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEE
Q psy8436          36 ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVIC   89 (306)
Q Consensus        36 V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~   89 (306)
                      |..|.|+|+|+++| |++||+|++|||+.+.  ++.+....+.  +..+.|+|.
T Consensus         2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~--Dw~D~~~~l~--~e~l~L~V~   50 (433)
T TIGR03279         2 ISAVLPGSIAEELG-FEPGDALVSINGVAPR--DLIDYQFLCA--DEELELEVL   50 (433)
T ss_pred             cCCcCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHhc--CCcEEEEEE
Confidence            67899999999999 9999999999999998  5667766664  356888886

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>PRK10898 serine endoprotease; Provisional

Probab=98.18  E-value=6.8e-06  Score=74.55  Aligned_cols=59  Identities=22%  Similarity=0.429  Sum_probs=49.8

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L~v~r~~~   93 (306)
                      .|++|..|.++|||+++| |+.||+|++|||+.+.+  +.+....+..  .++.+.|+|.|...
T Consensus       279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~~l~~~l~~~~~g~~v~l~v~R~g~  339 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDDK  339 (353)
T ss_pred             CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            689999999999999999 99999999999999984  4555555544  46789999998754

>KOG3834|consensus

Probab=98.12  E-value=4.4e-05  Score=68.44  Aligned_cols=59  Identities=15%  Similarity=0.280  Sum_probs=50.1

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRN   91 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~   91 (306)
                      .|.-|-+|.++++|+++|..--=|-|++|||.-|.. ..+...++|+..-+.|+|+|...
T Consensus        15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~sekVkltv~n~   73 (462)
T KOG3834|consen   15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKANSEKVKLTVYNS   73 (462)
T ss_pred             eeEEEEEeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhcccceEEEEEec
Confidence            468888999999999999777789999999999975 45777788888877799999754

>KOG4407|consensus

Probab=98.10  E-value=4.2e-06  Score=83.36  Aligned_cols=51  Identities=24%  Similarity=0.423  Sum_probs=47.0

Q ss_pred             cEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCc
Q psy8436         251 GIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQS  302 (306)
Q Consensus       251 gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~  302 (306)
                      -|||++|.++|+|+.+- |+-||+++.||..++.++...+++.++++.+...
T Consensus       144 T~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~  194 (1973)
T KOG4407|consen  144 TIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVL  194 (1973)
T ss_pred             hhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCCCCC
Confidence            47899999999999986 9999999999999999999999999999987654

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.07  E-value=1.3e-05  Score=75.24  Aligned_cols=58  Identities=19%  Similarity=0.392  Sum_probs=50.7

Q ss_pred             CeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeEEEEEEeCCC
Q psy8436          33 PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-DSHVEIVICRNPD   93 (306)
Q Consensus        33 gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~v~L~v~r~~~   93 (306)
                      +.+|..|.++|||+++| |++||+|++|||+.+.  ++++....++.. ++.+.|+|.|+..
T Consensus       222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~  280 (449)
T PRK10779        222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLT--QWQTFVTLVRDNPGKPLALEIERQGS  280 (449)
T ss_pred             CcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCEEEEEEEECCE
Confidence            47899999999999999 9999999999999998  567787787764 5679999998764

>KOG3938|consensus

Probab=97.96  E-value=1.1e-05  Score=67.72  Aligned_cols=77  Identities=27%  Similarity=0.295  Sum_probs=65.5

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ....+|.+.|..  ..||++|+..-     ..-.||+.|.++|.-++--.+++||.|-+|||+++.|+-|-|+..+||+.
T Consensus       125 Gq~kEv~v~Kse--dalGlTITDNG-----~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel  197 (334)
T KOG3938|consen  125 GQAKEVEVVKSE--DALGLTITDNG-----AGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKEL  197 (334)
T ss_pred             CcceeEEEEecc--cccceEEeeCC-----cceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhc
Confidence            455688888884  67999996421     12379999999999998878999999999999999999999999999999


Q ss_pred             CCCc
Q psy8436         299 FPQS  302 (306)
Q Consensus       299 ~~~~  302 (306)
                      +.+.
T Consensus       198 ~rge  201 (334)
T KOG3938|consen  198 PRGE  201 (334)
T ss_pred             ccCC
Confidence            8765

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=97.93  E-value=6.1e-05  Score=68.42  Aligned_cols=70  Identities=16%  Similarity=0.394  Sum_probs=55.5

Q ss_pred             CCCceeEEEEecCCCCcCCCeEEEEeC--------CCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeE
Q psy8436          14 DSNELGIYIERQDGGAHFSPYLISHIE--------PGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-DSHV   84 (306)
Q Consensus        14 ~~~~lG~~i~gg~~~~~~~gi~V~~V~--------~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~v   84 (306)
                      .+..+|+.+..       .|++|....        .++||+++| |++||.|++|||+.+.  +++++.++++.. +..+
T Consensus        94 gG~~iGI~l~t-------~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~--s~~DL~~iL~~~~g~~V  163 (402)
T TIGR02860        94 GGQSIGVKLNT-------KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIK--NMDDLANLINKAGGEKL  163 (402)
T ss_pred             CCEEEEEEEec-------CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCeE
Confidence            45677777752       578875542        268999999 9999999999999998  567888888876 5679


Q ss_pred             EEEEEeCCC
Q psy8436          85 EIVICRNPD   93 (306)
Q Consensus        85 ~L~v~r~~~   93 (306)
                      .|+|.|+..
T Consensus       164 ~LtV~R~Ge  172 (402)
T TIGR02860       164 TLTIERGGK  172 (402)
T ss_pred             EEEEEECCE
Confidence            999998764

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=97.91  E-value=3.1e-05  Score=66.98  Aligned_cols=49  Identities=18%  Similarity=0.267  Sum_probs=43.0

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCC
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQ  301 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~  301 (306)
                      .|+.|..+.++++|++.| |++||.|++|||.++.++  +++.+++.+...+
T Consensus       191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~--~~~~~~l~~~~~~  239 (259)
T TIGR01713       191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDP--EQAFQALQMLREE  239 (259)
T ss_pred             eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCC
Confidence            589999999999999999 999999999999999764  6888888876543

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>KOG1421|consensus

Probab=97.83  E-value=0.00038  Score=65.99  Aligned_cols=56  Identities=21%  Similarity=0.430  Sum_probs=48.6

Q ss_pred             eEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeEEEEEEeCCC
Q psy8436          34 YLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-DSHVEIVICRNPD   93 (306)
Q Consensus        34 i~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~v~L~v~r~~~   93 (306)
                      ++|..|.++|||.+.  |++||.+|+||+..+.  +.+++.++|... +..+.|+|.|...
T Consensus       305 LvV~~vL~~gpa~k~--Le~GDillavN~t~l~--df~~l~~iLDegvgk~l~LtI~Rggq  361 (955)
T KOG1421|consen  305 LVVETVLPEGPAEKK--LEPGDILLAVNSTCLN--DFEALEQILDEGVGKNLELTIQRGGQ  361 (955)
T ss_pred             EEEEEeccCCchhhc--cCCCcEEEEEcceehH--HHHHHHHHHhhccCceEEEEEEeCCE
Confidence            779999999999765  9999999999998887  567888888776 7789999999753

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=97.77  E-value=0.0002  Score=55.70  Aligned_cols=83  Identities=22%  Similarity=0.197  Sum_probs=53.5

Q ss_pred             ceEEEEEEeC---CCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCC-CCEEEEECCEeCCCCCHHHHHHHH
Q psy8436         220 SMFTVTFQKG---PGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLRE-GDEIIAINGVPLENKTHAEAIAMF  295 (306)
Q Consensus       220 ~~~~v~l~k~---~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~-GD~Il~VNG~~v~~~~~~eav~~L  295 (306)
                      ..+.|.+.-.   ++.+-||+++.-.........+.-|.+|.|+|||+++| |++ .|-|+.+++..+.+.  ++..+++
T Consensus        10 ~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~--~~l~~~v   86 (138)
T PF04495_consen   10 TTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDE--DDLFELV   86 (138)
T ss_dssp             SEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--ST--CHHHHHH
T ss_pred             eEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCH--HHHHHHH
Confidence            3455655432   22467899985433332223578899999999999999 998 699999999998864  5888888


Q ss_pred             hhcCCCceec
Q psy8436         296 KDIFPQSSKL  305 (306)
Q Consensus       296 k~~~~~~~~l  305 (306)
                      +..-++.+.|
T Consensus        87 ~~~~~~~l~L   96 (138)
T PF04495_consen   87 EANENKPLQL   96 (138)
T ss_dssp             HHTTTS-EEE
T ss_pred             HHcCCCcEEE
Confidence            8888887765

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=97.76  E-value=0.00022  Score=50.81  Aligned_cols=71  Identities=21%  Similarity=0.358  Sum_probs=43.2

Q ss_pred             ceeEEEEecCCCCcCCCeEEEEeCCC--------ChhcccC-CCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEE
Q psy8436          17 ELGIYIERQDGGAHFSPYLISHIEPG--------GAIHRDG-RFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIV   87 (306)
Q Consensus        17 ~lG~~i~gg~~~~~~~gi~V~~V~~g--------s~A~~~G-~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~   87 (306)
                      -||..+.-..     .+..|.+|.+|        ||-.+.| .+++||.|++|||+.|..- ..-...+..+++.+|.|+
T Consensus         2 ~LGAd~~~~~-----~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~-~~~~~lL~~~agk~V~Lt   75 (88)
T PF14685_consen    2 LLGADFSYDN-----GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD-ANPYRLLEGKAGKQVLLT   75 (88)
T ss_dssp             B-SEEEEEET-----TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT-B-HHHHHHTTTTSEEEEE
T ss_pred             ccceEEEEcC-----CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC-CCHHHHhcccCCCEEEEE
Confidence            3565555442     35889999987        5666666 2569999999999999853 233344455568899999


Q ss_pred             EEeCCC
Q psy8436          88 ICRNPD   93 (306)
Q Consensus        88 v~r~~~   93 (306)
                      |.+...
T Consensus        76 v~~~~~   81 (88)
T PF14685_consen   76 VNRKPG   81 (88)
T ss_dssp             EE-STT
T ss_pred             EecCCC
Confidence            988653

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=97.71  E-value=6.8e-05  Score=68.07  Aligned_cols=52  Identities=17%  Similarity=0.193  Sum_probs=43.1

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc-CCCcee
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI-FPQSSK  304 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~-~~~~~~  304 (306)
                      .|++|..|.+++||+++| |++||+|++|||+++.+  +++....|++. ++..+.
T Consensus       278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~dl~~~l~~~~~g~~v~  330 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIG--AEELMDRIAETRPGSKVM  330 (351)
T ss_pred             ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEE
Confidence            489999999999999998 99999999999999976  46777777763 444443

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10898 serine endoprotease; Provisional

Probab=97.69  E-value=9.3e-05  Score=67.20  Aligned_cols=52  Identities=23%  Similarity=0.286  Sum_probs=42.1

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh-cCCCcee
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD-IFPQSSK  304 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~-~~~~~~~  304 (306)
                      .|++|.+|.+++||+++| |++||+|++|||+++.++  ++....|.. .++..+.
T Consensus       279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~--~~l~~~l~~~~~g~~v~  331 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISA--LETMDQVAEIRPGSVIP  331 (353)
T ss_pred             CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEE
Confidence            589999999999999998 999999999999999764  566666655 3444343

>KOG0606|consensus

Probab=97.62  E-value=0.00014  Score=72.46  Aligned_cols=82  Identities=18%  Similarity=0.255  Sum_probs=66.5

Q ss_pred             EEEEEeCCCCceeEEEEecCC--CC---cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           7 VFRVVKDDSNELGIYIERQDG--GA---HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         7 ~v~l~r~~~~~lG~~i~gg~~--~~---~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      .+.+.+ .+.+|||++..-..  +.   ..--..|..|.+++||..+| |+.||.|+.|||..+.++.|.+++++|-+.+
T Consensus       629 pI~i~~-~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~g  706 (1205)
T KOG0606|consen  629 PITIHF-SGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSG  706 (1205)
T ss_pred             ceeeec-cccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcC
Confidence            467777 56799998865422  11   11136689999999999999 9999999999999999999999999999888


Q ss_pred             CeEEEEEEe
Q psy8436          82 SHVEIVICR   90 (306)
Q Consensus        82 ~~v~L~v~r   90 (306)
                      +.|.+.+.-
T Consensus       707 n~v~~~ttp  715 (1205)
T KOG0606|consen  707 NKVTLRTTP  715 (1205)
T ss_pred             CeeEEEeec
Confidence            888877654

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=97.56  E-value=0.00063  Score=59.03  Aligned_cols=57  Identities=18%  Similarity=0.315  Sum_probs=49.8

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEEEEEeCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEIVICRNP   92 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L~v~r~~   92 (306)
                      .|+|+..+..+++|  .|.|+.||.|++|||+.+.  +.++....++..  |+.|++.+.|..
T Consensus       130 ~gvyv~~v~~~~~~--~gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~~  188 (342)
T COG3480         130 AGVYVLSVIDNSPF--KGKLEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERHN  188 (342)
T ss_pred             eeEEEEEccCCcch--hceeccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEecc
Confidence            38999999999999  6889999999999999999  567888887764  889999999754

>KOG3129|consensus

Probab=97.56  E-value=0.00026  Score=57.58  Aligned_cols=60  Identities=20%  Similarity=0.439  Sum_probs=46.6

Q ss_pred             eEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCC-HHHHHHHHhcC-CCeEEEEEEeCCCC
Q psy8436          34 YLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT-IQEAREALNNK-DSHVEIVICRNPDD   94 (306)
Q Consensus        34 i~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~-~~~a~~~l~~~-~~~v~L~v~r~~~~   94 (306)
                      ++|..|.|+|||+++| |++||.|+++..+.-.+.. ........+.. +..+.++|.|....
T Consensus       141 a~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~  202 (231)
T KOG3129|consen  141 AVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQK  202 (231)
T ss_pred             EEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCE
Confidence            7899999999999999 9999999999877666554 44444444444 55789999887644

>KOG1738|consensus

Probab=97.46  E-value=0.00018  Score=67.53  Aligned_cols=73  Identities=22%  Similarity=0.429  Sum_probs=65.0

Q ss_pred             CCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEe
Q psy8436          14 DSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICR   90 (306)
Q Consensus        14 ~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r   90 (306)
                      ++.|+|+.|-..-+|    ..+|+.+.+++||+.++.+..||+|+.||++-+.+|.+..++.-|+.....|.++|..
T Consensus       211 p~eglg~~I~Ssydg----~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkK  283 (638)
T KOG1738|consen  211 PSEGLGLYIDSSYDG----PHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKK  283 (638)
T ss_pred             cccCCceEEeeecCC----ceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeec
Confidence            778999999876655    3889999999999999999999999999999999999999999999987777776654

>KOG1421|consensus

Probab=97.36  E-value=0.004  Score=59.29  Aligned_cols=50  Identities=26%  Similarity=0.253  Sum_probs=45.0

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCce
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSS  303 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~  303 (306)
                      .|+||...-.++||.+ + |+.-.-|.+|||+.+.  +.++.+.+|+..|..++
T Consensus       862 ~gvyvt~rg~gspalq-~-l~aa~fitavng~~t~--~lddf~~~~~~ipdnsy  911 (955)
T KOG1421|consen  862 EGVYVTSRGYGSPALQ-M-LRAAHFITAVNGHDTN--TLDDFYHMLLEIPDNSY  911 (955)
T ss_pred             CceEEeecccCChhHh-h-cchheeEEEecccccC--cHHHHHHHHhhCCCCce
Confidence            5899999999999998 5 9999999999999985  56899999999998765

>KOG1320|consensus

Probab=97.35  E-value=0.0032  Score=58.41  Aligned_cols=47  Identities=17%  Similarity=0.388  Sum_probs=40.8

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      .+++|.+|.+++++...+ +++||+|+.|||+.+.++  .+...+|+..-
T Consensus       398 q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~--~~l~~~i~~~~  444 (473)
T KOG1320|consen  398 QLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNL--KHLYELIEECS  444 (473)
T ss_pred             eEEEEEEeccCCCccccc-ccCCCEEEEECCEEeech--HHHHHHHHhcC
Confidence            478999999999999876 999999999999999986  57777776654

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.00053  Score=62.28  Aligned_cols=59  Identities=19%  Similarity=0.361  Sum_probs=49.1

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L~v~r~~~   93 (306)
                      .|++|..|.+++||+++| ++.||.|+++||+.+.+  ..+....+...  +..+.+.+.|..+
T Consensus       270 ~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~--~~~l~~~v~~~~~g~~v~~~~~r~g~  330 (347)
T COG0265         270 AGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVAS--LSDLVAAVASNRPGDEVALKLLRGGK  330 (347)
T ss_pred             CceEEEecCCCChHHHcC-CCCCCEEEEECCEEccC--HHHHHHHHhccCCCCEEEEEEEECCE
Confidence            689999999999999999 99999999999999995  44444444443  6789999999843

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=97.33  E-value=0.00056  Score=62.28  Aligned_cols=62  Identities=21%  Similarity=0.328  Sum_probs=47.2

Q ss_pred             CcccEEEEcCCCCCCCCCcEEEEEE---c-----CCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCcee
Q psy8436         233 KSLGFSIVGGRDSPKGNLGIFVKTI---F-----QSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSK  304 (306)
Q Consensus       233 ~~lG~~l~gg~~~~~~~~gi~V~~V---~-----~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~  304 (306)
                      ..+|+.+.-        .|++|-..   .     .++||+++| |++||.|++|||.++.+  ++++.++|++..++.+.
T Consensus        96 ~~iGI~l~t--------~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s--~~DL~~iL~~~~g~~V~  164 (402)
T TIGR02860        96 QSIGVKLNT--------KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKN--MDDLANLINKAGGEKLT  164 (402)
T ss_pred             EEEEEEEec--------CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCeEE
Confidence            567777731        47777443   2     258999888 99999999999999975  57888999888766654


Q ss_pred             c
Q psy8436         305 L  305 (306)
Q Consensus       305 l  305 (306)
                      |
T Consensus       165 L  165 (402)
T TIGR02860       165 L  165 (402)
T ss_pred             E
Confidence            4

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>KOG0606|consensus

Probab=97.30  E-value=0.00049  Score=68.72  Aligned_cols=75  Identities=24%  Similarity=0.351  Sum_probs=59.8

Q ss_pred             EEEEEeCCCCCcccEEEE------cCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436         223 TVTFQKGPGQKSLGFSIV------GGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK  296 (306)
Q Consensus       223 ~v~l~k~~~~~~lG~~l~------gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk  296 (306)
                      .|++.+..  .+|||++.      |..+.  --+-..|..|.+++||..+| |+.||-|+.|||+.+.++.|.|++++|-
T Consensus       629 pI~i~~~~--~~yGft~~airVy~Gd~d~--ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll  703 (1205)
T KOG0606|consen  629 PITIHFSG--KKYGFTLRAIRVYMGDKDV--YTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLL  703 (1205)
T ss_pred             ceeeeccc--cccCceeeeEEEecCCccc--ceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHH
Confidence            37777774  68998872      44431  11346789999999999988 9999999999999999999999999998


Q ss_pred             hcCCCc
Q psy8436         297 DIFPQS  302 (306)
Q Consensus       297 ~~~~~~  302 (306)
                      +...+.
T Consensus       704 ~~gn~v  709 (1205)
T KOG0606|consen  704 KSGNKV  709 (1205)
T ss_pred             hcCCee
Confidence            765543

>KOG1738|consensus

Probab=97.28  E-value=0.00023  Score=66.83  Aligned_cols=68  Identities=19%  Similarity=0.250  Sum_probs=60.9

Q ss_pred             CCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCcee
Q psy8436         232 QKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSK  304 (306)
Q Consensus       232 ~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~  304 (306)
                      ..+||+-|...-+     ..++|..+.+++||+.+..|..||+|+.||+..+.+|.+.-.|+.|+..+.+.++
T Consensus       212 ~eglg~~I~Ssyd-----g~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l  279 (638)
T KOG1738|consen  212 SEGLGLYIDSSYD-----GPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIEL  279 (638)
T ss_pred             ccCCceEEeeecC-----CceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCccccee
Confidence            4789999976555     4689999999999999999999999999999999999999999999998887654

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=97.25  E-value=0.00098  Score=61.72  Aligned_cols=66  Identities=17%  Similarity=0.313  Sum_probs=48.8

Q ss_pred             CCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCCC
Q psy8436          15 SNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDD   94 (306)
Q Consensus        15 ~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~~   94 (306)
                      ...||+.+....     .+..|..|.++|||.++| |.+||+|++|||.+-.-..+        ++++.+.+.+.|....
T Consensus       450 ~~~LGl~v~~~~-----g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~s~~l~~~--------~~~d~i~v~~~~~~~L  515 (558)
T COG3975         450 AYYLGLKVKSEG-----GHEKITFVFPGGPAYKAG-LSPGDKIVAINGISDQLDRY--------KVNDKIQVHVFREGRL  515 (558)
T ss_pred             CcccceEecccC-----CeeEEEecCCCChhHhcc-CCCccEEEEEcCcccccccc--------ccccceEEEEccCCce
Confidence            347888875322     358999999999999999 99999999999992221111        4567788888776543

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=97.12  E-value=0.0015  Score=56.49  Aligned_cols=49  Identities=14%  Similarity=0.272  Sum_probs=38.4

Q ss_pred             ChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEEEEEeCCCC
Q psy8436          43 GAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEIVICRNPDD   94 (306)
Q Consensus        43 s~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L~v~r~~~~   94 (306)
                      ..-.+.| ||.||.+++|||.+|..  -+++.+++++-  ...++|+|.|+...
T Consensus       218 ~lF~~~G-Lq~GDva~sING~dL~D--~~qa~~l~~~L~~~tei~ltVeRdGq~  268 (276)
T PRK09681        218 SLFDASG-FKEGDIAIALNQQDFTD--PRAMIALMRQLPSMDSIQLTVLRKGAR  268 (276)
T ss_pred             HHHHHcC-CCCCCEEEEeCCeeCCC--HHHHHHHHHHhccCCeEEEEEEECCEE
Confidence            3456789 99999999999999994  46666666554  35799999998754

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=97.00  E-value=0.003  Score=44.94  Aligned_cols=55  Identities=27%  Similarity=0.418  Sum_probs=37.2

Q ss_pred             CcEEEEEEcCC--------ChhhhcC-CCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceecC
Q psy8436         250 LGIFVKTIFQS--------GQAAENE-KLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKLS  306 (306)
Q Consensus       250 ~gi~V~~V~~~--------g~A~~~G-~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l~  306 (306)
                      .+..|..|.++        ||.++.| .+++||.|++|||+++..-  .....+|.+..++.+.|+
T Consensus        12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~--~~~~~lL~~~agk~V~Lt   75 (88)
T PF14685_consen   12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD--ANPYRLLEGKAGKQVLLT   75 (88)
T ss_dssp             TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT--B-HHHHHHTTTTSEEEEE
T ss_pred             CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC--CCHHHHhcccCCCEEEEE
Confidence            36778999887        5666665 2679999999999999754  367888888888887763

>KOG3532|consensus

Probab=96.97  E-value=0.0031  Score=59.95  Aligned_cols=73  Identities=16%  Similarity=0.384  Sum_probs=57.9

Q ss_pred             eCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeC
Q psy8436          12 KDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRN   91 (306)
Q Consensus        12 r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~   91 (306)
                      +..+..+|+..-...+    ..+-|-.|.+++||.++. |++||.+++|||+++.  +..++..+++.....|...+.|.
T Consensus       382 ~~~s~~ig~vf~~~~~----~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~~  454 (1051)
T KOG3532|consen  382 YDVSSPIGLVFDKNTN----RAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVERS  454 (1051)
T ss_pred             ccccCceeEEEecCCc----eEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcccceEEEEeec
Confidence            3455667766653322    358899999999999998 9999999999999999  77899999999866666666553

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=96.96  E-value=0.00052  Score=63.52  Aligned_cols=50  Identities=28%  Similarity=0.434  Sum_probs=38.9

Q ss_pred             cccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCE--eCCCCCHHH
Q psy8436         234 SLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV--PLENKTHAE  290 (306)
Q Consensus       234 ~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~--~v~~~~~~e  290 (306)
                      .||+.+....      .+..|..|.++|||.++| |.+||.|++|||.  .+.+....+
T Consensus       452 ~LGl~v~~~~------g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~s~~l~~~~~~d  503 (558)
T COG3975         452 YLGLKVKSEG------GHEKITFVFPGGPAYKAG-LSPGDKIVAINGISDQLDRYKVND  503 (558)
T ss_pred             ccceEecccC------CeeEEEecCCCChhHhcc-CCCccEEEEEcCcccccccccccc
Confidence            6788774322      468899999999999999 9999999999999  444443333

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=96.86  E-value=0.0075  Score=50.33  Aligned_cols=73  Identities=15%  Similarity=0.271  Sum_probs=53.0

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CC
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DS   82 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~   82 (306)
                      +|.+-+.| .++-+|+.+..|              .+++.-.+.| ||.||..++||+.++.  +-+++..+|+..  ..
T Consensus       195 Irltpv~r-~eki~Gyr~~pg--------------kd~slF~~sg-lq~GDIavaiNnldlt--dp~~m~~llq~l~~m~  256 (275)
T COG3031         195 IRLTPVIR-NEKIEGYRFEPG--------------KDGSLFYKSG-LQRGDIAVAINNLDLT--DPEDMFRLLQMLRNMP  256 (275)
T ss_pred             eEeeeEee-CCceEEEEecCC--------------CCcchhhhhc-CCCcceEEEecCcccC--CHHHHHHHHHhhhcCc
Confidence            44445545 345667766633              4567778889 9999999999999998  456777777765  45


Q ss_pred             eEEEEEEeCCCCC
Q psy8436          83 HVEIVICRNPDDA   95 (306)
Q Consensus        83 ~v~L~v~r~~~~~   95 (306)
                      .+.|+|.|++...
T Consensus       257 s~qlTv~R~G~rh  269 (275)
T COG3031         257 SLQLTVIRRGKRH  269 (275)
T ss_pred             ceEEEEEecCccc
Confidence            6899999987543

>KOG3129|consensus

Probab=96.83  E-value=0.0025  Score=52.05  Aligned_cols=51  Identities=24%  Similarity=0.200  Sum_probs=38.3

Q ss_pred             EEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCC-HHHHHHHHhhcCCCce
Q psy8436         252 IFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKT-HAEAIAMFKDIFPQSS  303 (306)
Q Consensus       252 i~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~-~~eav~~Lk~~~~~~~  303 (306)
                      .+|.+|.++|||+++| |+.||+|+++..+.-.+.. ........++..++.+
T Consensus       141 a~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v  192 (231)
T KOG3129|consen  141 AVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIV  192 (231)
T ss_pred             EEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcce
Confidence            5799999999999988 9999999999887665543 4555555555544443

>KOG1320|consensus

Probab=96.55  E-value=0.0075  Score=55.98  Aligned_cols=61  Identities=30%  Similarity=0.458  Sum_probs=51.2

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC--CeEEEEEEeCCCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD--SHVEIVICRNPDDA   95 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~--~~v~L~v~r~~~~~   95 (306)
                      .+++|..|.|++++...+ +..||+|++|||+.+.++  .+...+++.|.  ++|.++.++..+..
T Consensus       398 q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~--~~l~~~i~~~~~~~~v~vl~~~~~e~~  460 (473)
T KOG1320|consen  398 QLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNL--KHLYELIEECSTEDKVAVLDRRSAEDA  460 (473)
T ss_pred             eEEEEEEeccCCCccccc-ccCCCEEEEECCEEeech--HHHHHHHHhcCcCceEEEEEecCccce
Confidence            378999999999999888 999999999999999965  67888888884  47777777765443

>KOG4371|consensus

Probab=95.97  E-value=0.0082  Score=59.71  Aligned_cols=85  Identities=21%  Similarity=0.373  Sum_probs=71.6

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      .+..|.|.+.+..++|+.++.-...   .|+||..+.-.+.|...|.|++||+++..+|+++.+.+-.+..+-++-.-+.
T Consensus      1245 ~l~~~~~~~~p~~~~~~~~~~~~~s---~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p 1321 (1332)
T KOG4371|consen 1245 PLISVMLLKKPMATLGLSLAKRTMS---DGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGP 1321 (1332)
T ss_pred             hhhhheeeecccccccccccccCcC---CceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCc
Confidence            4566778888999999999765433   4899999999999999999999999999999999999988888877766667


Q ss_pred             EEEEEEeC
Q psy8436          84 VEIVICRN   91 (306)
Q Consensus        84 v~L~v~r~   91 (306)
                      |.+++.|.
T Consensus      1322 ~~~~~~~~ 1329 (1332)
T KOG4371|consen 1322 VQITVTRE 1329 (1332)
T ss_pred             hhheehhh
Confidence            77877663

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.91  E-value=0.02  Score=51.96  Aligned_cols=47  Identities=26%  Similarity=0.404  Sum_probs=39.3

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      .|++|..|.+++||+++| ++.||.|+++||..+.+.  .+....+....
T Consensus       270 ~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~--~~l~~~v~~~~  316 (347)
T COG0265         270 AGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASL--SDLVAAVASNR  316 (347)
T ss_pred             CceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCH--HHHHHHHhccC
Confidence            589999999999999998 999999999999999764  45555554443

>KOG3532|consensus

Probab=95.59  E-value=0.038  Score=52.85  Aligned_cols=65  Identities=22%  Similarity=0.351  Sum_probs=50.4

Q ss_pred             CcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436         233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL  305 (306)
Q Consensus       233 ~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l  305 (306)
                      ..+|+-.....     +..+-|..|.++++|.++. +.+||.+++|||+++.  +..++...++......+.|
T Consensus       386 ~~ig~vf~~~~-----~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l  450 (1051)
T KOG3532|consen  386 SPIGLVFDKNT-----NRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVL  450 (1051)
T ss_pred             CceeEEEecCC-----ceEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcccceEEE
Confidence            45666553221     2467899999999999987 9999999999999996  4679999998877655443

>PF12812 PDZ_1: PDZ-like domain

Probab=95.54  E-value=0.045  Score=38.09  Aligned_cols=46  Identities=20%  Similarity=0.177  Sum_probs=36.8

Q ss_pred             EEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC
Q psy8436         252 IFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP  300 (306)
Q Consensus       252 i~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~  300 (306)
                      .++.....++++.. +++..|-.|.+|||+++.++  ++.++.+|++|+
T Consensus        32 gv~v~~~~g~~~~~-~~i~~g~iI~~Vn~kpt~~L--d~f~~vvk~ipd   77 (78)
T PF12812_consen   32 GVYVAVSGGSLAFA-GGISKGFIITSVNGKPTPDL--DDFIKVVKKIPD   77 (78)
T ss_pred             EEEEEecCCChhhh-CCCCCCeEEEeECCcCCcCH--HHHHHHHHhCCC
Confidence            44445567777765 44999999999999999765  799999999886

>KOG4407|consensus

Probab=95.53  E-value=0.0071  Score=61.39  Aligned_cols=62  Identities=15%  Similarity=0.366  Sum_probs=56.0

Q ss_pred             CeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCC
Q psy8436          33 PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDA   95 (306)
Q Consensus        33 gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~~~   95 (306)
                      -|||+.|.+++||+-+- ||.||+++.||...+.++-+.+++.++++....+.|.|.-.....
T Consensus       144 T~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P~~~dv  205 (1973)
T KOG4407|consen  144 TIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVPKECDV  205 (1973)
T ss_pred             hhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCCCCCCceeccccCch
Confidence            59999999999999998 999999999999999999999999999999888888886655443

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=95.11  E-value=0.04  Score=48.13  Aligned_cols=48  Identities=29%  Similarity=0.528  Sum_probs=40.9

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCC
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQ  301 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~  301 (306)
                      .|+|+..|..++++.  |.|+.||.|++|||.++..  .+|...++++.+.+
T Consensus       130 ~gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~k~G  177 (342)
T COG3480         130 AGVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFTS--SDELIDYVSSKKPG  177 (342)
T ss_pred             eeEEEEEccCCcchh--ceeccCCeEEeeCCeecCC--HHHHHHHHhccCCC
Confidence            489999999999985  7799999999999999975  47999988765443

>KOG0792|consensus

Probab=94.81  E-value=0.2  Score=50.57  Aligned_cols=69  Identities=23%  Similarity=0.432  Sum_probs=57.1

Q ss_pred             CcccEEEEcCCCCCC--CCCcEEEEEEc-------------CCChhhhc-CCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436         233 KSLGFSIVGGRDSPK--GNLGIFVKTIF-------------QSGQAAEN-EKLREGDEIIAINGVPLENKTHAEAIAMFK  296 (306)
Q Consensus       233 ~~lG~~l~gg~~~~~--~~~gi~V~~V~-------------~~g~A~~~-G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk  296 (306)
                      +.+||-+.|+.+...  -+.+..++.|.             |++.|+.+ -++..||+++.|||.++....|++.+.+|+
T Consensus       716 g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~ir  795 (1144)
T KOG0792|consen  716 GRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLIR  795 (1144)
T ss_pred             ccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHHh
Confidence            679999999888641  23567788888             88888665 458999999999999999999999999999


Q ss_pred             hcCCC
Q psy8436         297 DIFPQ  301 (306)
Q Consensus       297 ~~~~~  301 (306)
                      +...+
T Consensus       796 s~r~~  800 (1144)
T KOG0792|consen  796 SPREN  800 (1144)
T ss_pred             hhhhc
Confidence            87664

>PF12812 PDZ_1: PDZ-like domain

Probab=94.78  E-value=0.11  Score=36.12  Aligned_cols=47  Identities=13%  Similarity=0.137  Sum_probs=38.4

Q ss_pred             CeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436          33 PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus        33 gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      |.++.....|+++..-| +..|-.|.+|||+++.  +.++.+++++..++
T Consensus        31 ~gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~--~Ld~f~~vvk~ipd   77 (78)
T PF12812_consen   31 GGVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTP--DLDDFIKVVKKIPD   77 (78)
T ss_pred             CEEEEEecCCChhhhCC-CCCCeEEEeECCcCCc--CHHHHHHHHHhCCC
Confidence            35555678888888666 9999999999999999  56888888887754

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=94.21  E-value=0.088  Score=45.72  Aligned_cols=34  Identities=24%  Similarity=0.403  Sum_probs=27.1

Q ss_pred             hcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCC
Q psy8436         265 ENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQ  301 (306)
Q Consensus       265 ~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~  301 (306)
                      +.| |++||.+++|||.++.+.  +++.+++++.+..
T Consensus       222 ~~G-Lq~GDva~sING~dL~D~--~qa~~l~~~L~~~  255 (276)
T PRK09681        222 ASG-FKEGDIAIALNQQDFTDP--RAMIALMRQLPSM  255 (276)
T ss_pred             HcC-CCCCCEEEEeCCeeCCCH--HHHHHHHHHhccC
Confidence            456 999999999999999864  6777777766553

>KOG3834|consensus

Probab=91.73  E-value=0.9  Score=41.53  Aligned_cols=85  Identities=12%  Similarity=0.228  Sum_probs=59.0

Q ss_pred             ccEEEEEEeCCCCc---eeEEEEecCC-CCcCCCeEEEEeCCCChhcccCCCC-CCCEEEEE-CCEeCCCCCHHHHHHHH
Q psy8436           4 QFKVFRVVKDDSNE---LGIYIERQDG-GAHFSPYLISHIEPGGAIHRDGRFH-VGDELIKV-NDKRLKGLTIQEAREAL   77 (306)
Q Consensus         4 ~~~~v~l~r~~~~~---lG~~i~gg~~-~~~~~gi~V~~V~~gs~A~~~G~L~-~GD~Il~V-NG~~l~~~~~~~a~~~l   77 (306)
                      ++|.|.|......+   ||++|+=-.. .....-..|-+|.+++||+++| |+ .+|-|+-+ |.+.-   ..++...+|
T Consensus        77 ~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAg-l~~~~DYivG~~~~~~~---~~eDl~~lI  152 (462)
T KOG3834|consen   77 EVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAG-LRPYTDYIVGIWDAVMH---EEEDLFTLI  152 (462)
T ss_pred             eeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcc-cccccceEecchhhhcc---chHHHHHHH
Confidence            57888898887778   9999864432 1111224578899999999999 77 89999988 55433   345566666


Q ss_pred             hcC-CCeEEEEEEeCC
Q psy8436          78 NNK-DSHVEIVICRNP   92 (306)
Q Consensus        78 ~~~-~~~v~L~v~r~~   92 (306)
                      ... ++.+.|.|....
T Consensus       153 eshe~kpLklyVYN~D  168 (462)
T KOG3834|consen  153 ESHEGKPLKLYVYNHD  168 (462)
T ss_pred             HhccCCCcceeEeecC
Confidence            655 556788776543

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=90.77  E-value=0.83  Score=41.82  Aligned_cols=53  Identities=19%  Similarity=0.439  Sum_probs=41.2

Q ss_pred             EEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCe---EEEEEEe
Q psy8436          35 LISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-DSH---VEIVICR   90 (306)
Q Consensus        35 ~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~---v~L~v~r   90 (306)
                      ++..+..+++|+.+| |+.||+|+++|+..+..  ..++...+... +..   +.+.+.|
T Consensus       132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~i~~~~  188 (375)
T COG0750         132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVAS--WDDVRRLLVAAAGDVFNLLTILVIR  188 (375)
T ss_pred             eeeecCCCCHHHHcC-CCCCCEEEeECCEEccC--HHHHHHHHHhccCCcccceEEEEEe
Confidence            344789999999999 99999999999999995  45555555443 334   6777877

>KOG2921|consensus

Probab=87.24  E-value=1.1  Score=40.63  Aligned_cols=48  Identities=17%  Similarity=0.274  Sum_probs=39.2

Q ss_pred             CCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         249 NLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       249 ~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      +.|+.|.+|...+|+----+|.+||+|..+||.+|..  .++..+.|+.+
T Consensus       219 g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~--v~dW~ecl~ts  266 (484)
T KOG2921|consen  219 GEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHK--VSDWLECLATS  266 (484)
T ss_pred             CceEEEEeccccCCCcCcccCCccceEEecCCcccCC--HHHHHHHHHhh
Confidence            3588999999999886544599999999999999976  46888877763

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=85.61  E-value=2.2  Score=38.98  Aligned_cols=44  Identities=23%  Similarity=0.314  Sum_probs=35.0

Q ss_pred             EEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         253 FVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       253 ~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      ++..+..+++|+.+| |++||+|+++|+..+..+  .+....+....
T Consensus       132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~--~~~~~~~~~~~  175 (375)
T COG0750         132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVASW--DDVRRLLVAAA  175 (375)
T ss_pred             eeeecCCCCHHHHcC-CCCCCEEEeECCEEccCH--HHHHHHHHhcc
Confidence            455799999999998 999999999999999765  45555554433

>KOG2921|consensus

Probab=85.30  E-value=1.7  Score=39.46  Aligned_cols=47  Identities=11%  Similarity=0.162  Sum_probs=38.0

Q ss_pred             CCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc
Q psy8436          31 FSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN   79 (306)
Q Consensus        31 ~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~   79 (306)
                      ..|+.|..|...||+---..|.+||.|.++||..|.+  -++-...++.
T Consensus       219 g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~--v~dW~ecl~t  265 (484)
T KOG2921|consen  219 GEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHK--VSDWLECLAT  265 (484)
T ss_pred             CceEEEEeccccCCCcCcccCCccceEEecCCcccCC--HHHHHHHHHh
Confidence            3689999999999886554599999999999999994  5666666665

>KOG0792|consensus

Probab=83.33  E-value=0.66  Score=47.03  Aligned_cols=73  Identities=12%  Similarity=0.228  Sum_probs=56.8

Q ss_pred             EEEEeCCCCceeEEEEecCCCC---cCCCeEEEEeC-------------CCChhcccC-CCCCCCEEEEECCEeCCCCCH
Q psy8436           8 FRVVKDDSNELGIYIERQDGGA---HFSPYLISHIE-------------PGGAIHRDG-RFHVGDELIKVNDKRLKGLTI   70 (306)
Q Consensus         8 v~l~r~~~~~lG~~i~gg~~~~---~~~gi~V~~V~-------------~gs~A~~~G-~L~~GD~Il~VNG~~l~~~~~   70 (306)
                      +.|..++.+.|||.+.|+.+-.   --....++.+.             |+++|+.+. ++..||+++.|||.++....|
T Consensus       708 ~~~~~~~~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~  787 (1144)
T KOG0792|consen  708 SYLAEDPPGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEH  787 (1144)
T ss_pred             cccccCCCccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccc
Confidence            3455556789999999983321   11246677777             888886654 489999999999999999999


Q ss_pred             HHHHHHHhcC
Q psy8436          71 QEAREALNNK   80 (306)
Q Consensus        71 ~~a~~~l~~~   80 (306)
                      +..+.+++++
T Consensus       788 ~~~vs~irs~  797 (1144)
T KOG0792|consen  788 DQVVSLIRSP  797 (1144)
T ss_pred             cchHHHHhhh
Confidence            9999999987

>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised

Probab=81.84  E-value=2.3  Score=34.68  Aligned_cols=38  Identities=18%  Similarity=0.410  Sum_probs=31.3

Q ss_pred             ceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEE
Q psy8436          17 ELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV   60 (306)
Q Consensus        17 ~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~V   60 (306)
                      ..|+.+....+     .+.|..|..||+|++.| +.-+++|++|
T Consensus       112 ~~GL~l~~e~~-----~~~Vd~v~fgS~A~~~g-~d~d~~I~~v  149 (183)
T PF11874_consen  112 AAGLTLMEEGG-----KVIVDEVEFGSPAEKAG-IDFDWEITEV  149 (183)
T ss_pred             hCCCEEEeeCC-----EEEEEecCCCCHHHHcC-CCCCcEEEEE
Confidence            35777775432     49999999999999999 9999988876

This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=81.57  E-value=2.7  Score=35.55  Aligned_cols=51  Identities=22%  Similarity=0.358  Sum_probs=36.2

Q ss_pred             CcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCC
Q psy8436         233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQ  301 (306)
Q Consensus       233 ~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~  301 (306)
                      .-+|+.+.-|++               ++.-.+.| |+.||..++||+.++.+  -+++..+|+..+..
T Consensus       205 ki~Gyr~~pgkd---------------~slF~~sg-lq~GDIavaiNnldltd--p~~m~~llq~l~~m  255 (275)
T COG3031         205 KIEGYRFEPGKD---------------GSLFYKSG-LQRGDIAVAINNLDLTD--PEDMFRLLQMLRNM  255 (275)
T ss_pred             ceEEEEecCCCC---------------cchhhhhc-CCCcceEEEecCcccCC--HHHHHHHHHhhhcC
Confidence            457777765554               33445567 99999999999999865  46677777665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	306
2fne_A	117	The Crystal Structure Of The 13th Pdz Domain Of Mpd		1e-16
2iwo_A	120	12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz		1e-11
2dm8_A	116	Solution Structure Of The Eighth Pdz Domain Of Huma		1e-09
2jin_A	102	Crystal Structure Of Pdz Domain Of Synaptojanin-2 B		9e-09
1um7_A	113	Solution Structure Of The Third Pdz Domain Of Synap		2e-08
2eno_A	120	Solution Structure Of The Pdz Domain From Human Syn		2e-08
3jxt_A	104	Crystal Structure Of The Third Pdz Domain Of Sap-10		2e-08
2opg_A	98	The Crystal Structure Of The 10th Pdz Domain Of Mpd		2e-08
2jik_A	101	Crystal Structure Of Pdz Domain Of Synaptojanin-2 B		4e-08
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		4e-08
3zrt_A	199	Crystal Structure Of Human Psd-95 Pdz1-2 Length = 1		5e-08
2x7z_A	99	Crystal Structure Of The Sap97 Pdz2 I342w C378a Mut		5e-08
2o2t_A	117	The Crystal Structure Of The 1st Pdz Domain Of Mpdz		6e-08
1vj6_A	102	Pdz2 From Ptp-Bl In Complex With The C-Terminal Lig		7e-08
4g69_A	100	Structure Of The Human Discs Large 1 Pdz2 - Adenoma		7e-08
3gsl_A	196	Crystal Structure Of Psd-95 Tandem Pdz Domains 1 An		8e-08
2ka9_A	189	Solution Structure Of Psd-95 Pdz12 Complexed With C		8e-08
1gm1_A	94	Second Pdz Domain (Pdz2) Of Ptp-Bl Length = 94		8e-08
1tp3_A	119	Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv		1e-07
2aww_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		1e-07
1wfv_A	103	Solution Structure Of The Fifth Pdz Domain Of Human		1e-07
2awx_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		1e-07
1d5g_A	96	Solution Structure Of The Pdz2 Domain From Human Ph		1e-07
3pdz_A	96	Solution Structure Of The Pdz2 Domain From Human Ph		1e-07
1be9_A	119	The Third Pdz Domain From The Synaptic Protein Psd-		1e-07
4amh_A	106	Influence Of Circular Permutation On The Folding Pa		1e-07
2g2l_A	105	Crystal Structure Of The Second Pdz Domain Of Sap97		2e-07
2r4h_B	112	Crystal Structure Of A C1190s Mutant Of The 6th Pdz		2e-07
2awu_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		2e-07
2i0l_A	84	X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The		2e-07
3rl8_A	105	Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc L		2e-07
1qlc_A	95	Solution Structure Of The Second Pdz Domain Of Post		3e-07
2db5_A	128	Solution Structure Of The First Pdz Domain Of Inad-		3e-07
2oqs_A	97	Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV		3e-07
2byg_A	117	2nd Pdz Domain Of Discs Large Homologue 2 Length =		3e-07
2fe5_A	94	The Crystal Structure Of The Second Pdz Domain Of H		4e-07
2qg1_A	92	Crystal Structure Of The 11th Pdz Domain Of Mpdz (M		5e-07
2he2_A	102	Crystal Structure Of The 3rd Pdz Domain Of Human Di		6e-07
3k82_A	98	Crystal Structure Of The Third Pdz Domain Of Psd-95		9e-07
1wha_A	105	Solution Structure Of The Second Pdz Domain Of Huma		9e-07
3i4w_A	104	Crystal Structure Of The Third Pdz Domain Of Psd-95		9e-07
3hvq_C	170	Crystal Structure Of A Complex Between Protein Phos		1e-06
2wl7_A	102	Crystal Structure Of The Psd93 Pdz1 Domain Length =		2e-06
2dlu_A	111	Solution Structure Of The Second Pdz Domain Of Huma		2e-06
1uhp_A	107	Solution Structure Of Rsgi Ruh-005, A Pdz Domain In		2e-06
3rl7_B	107	Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc L		3e-06
1iu0_A	91	The First Pdz Domain Of Psd-95 Length = 91		3e-06
2koh_A	111	Nmr Structure Of Mouse Par3-Pdz3 In Complex With Ve		4e-06
2k1z_A	104	Solution Structure Of Par-3 Pdz3 Length = 104		5e-06
1ujd_A	117	Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of		5e-06
1uez_A	101	Solution Structure Of The First Pdz Domain Of Human		5e-06
1rgr_A	99	Cyclic Peptides Targeting Pdz Domains Of Psd-95: St		6e-06
1kef_A	93	Pdz1 Of Sap90 Length = 93		6e-06
1ozi_A	99	The Alternatively Spliced Pdz2 Domain Of Ptp-Bl Len		6e-06
2ehr_A	117	Solution Structure Of The Sixth Pdz Domain Of Human		7e-06
1zok_A	93	Pdz1 Domain Of Synapse Associated Protein 97 Length		8e-06
2rey_A	100	Crystal Structure Of The Pdz Domain Of Human Dishev		8e-06
1wg6_A	127	Solution Structure Of Pdz Domain In Protein Xp_1108		9e-06
1q7x_A	108	Solution Structure Of The Alternatively Spliced Pdz		1e-05
2koj_A	111	Solution Structure Of Mouse Par-3 Pdz2 (Residues 45		1e-05
1z87_A	263	Solution Structure Of The Split Ph-Pdz Supramodule		1e-05
2ogp_A	97	Solution Structure Of The Second Pdz Domain Of Par-		1e-05
2kaw_A	90	Nmr Structure Of The Mdvl1 Pdz Domain In Complex Wi		1e-05
2fcf_A	103	The Crystal Structure Of The 7th Pdz Domain Of Mpdz		2e-05
2iwq_A	123	7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz		2e-05
1x6d_A	119	Solution Structures Of The Pdz Domain Of Human Inte		2e-05
3b76_A	118	Crystal Structure Of The Third Pdz Domain Of Human		2e-05
2kom_A	121	Solution Structure Of Humar Par-3b Pdz2 (Residues 4		2e-05
1wi2_A	104	Solution Structure Of The Pdz Domain From Riken Cdn		2e-05
1mc7_A	95	Solution Structure Of Mdvl1 Pdz Domain Length = 95		2e-05
3egh_C	170	Crystal Structure Of A Complex Between Protein Phos		3e-05
3egg_C	170	Crystal Structure Of A Complex Between Protein Phos		3e-05
3shw_A	468	Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule		3e-05
3tsw_A	391	Crystal Structure Of The Pdz3-Sh3-Guk Core Module O		4e-05
2daz_A	124	Solution Structure Of The 7th Pdz Domain Of Inad-Li		4e-05
1uju_A	111	Solution Structure Of The Fourth Pdz Domain Of Huma		5e-05
1uju_A	111	Solution Structure Of The Fourth Pdz Domain Of Huma		8e-05
3axa_A	106	Crystal Structure Of Afadin Pdz Domain In Complex W		5e-05
2g5m_B	113	Spinophilin Pdz Domain Length = 113		6e-05
2csj_A	117	Solution Structure Of N-Terminal Pdz Domain From Mo		6e-05
2eeh_A	100	Solution Structure Of First Pdz Domain Of Pdz Domai		7e-05
4e34_A	87	Crystal Structure Of Cftr Associated Ligand (Cal) P		7e-05
3tsw_B	194	Crystal Structure Of The Pdz3-Sh3-Guk Core Module O		7e-05
2dkr_A	93	Solution Structure Of The Pdz Domain From Human Lin		7e-05
1p1d_A	196	Structural Insights Into The Inter-Domain Chaperoni		8e-05
2h3m_A	97	Crystal Structure Of Zo-1 Pdz1 Length = 97		9e-05
3fy5_A	91	Dishevelled Pdz Domain Homodimer Length = 91		9e-05
2rrm_A	100	Interplay Between Phosphatidyl-Inositol-Phosphates		9e-05
2h2c_A	107	Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Der		1e-04
2h2b_A	107	Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-der		1e-04
3tsv_A	124	Crystal Structure Of The Third Pdz Domain Of The Hu		1e-04
1ueq_A	123	Solution Structure Of The First Pdz Domain Of Human		1e-04
1v6b_A	118	Solution Structure Of The Third Pdz Domain Of Mouse		1e-04
2i1n_A	102	Crystal Structure Of The 1st Pdz Domain Of Human Dl		1e-04
1pdr_A	99	Crystal Structure Of The Third Pdz Domain From The		2e-04
1l6o_A	95	Xenopus Dishevelled Pdz Domain Length = 95		2e-04
1i16_A	130	Structure Of Interleukin 16: Implications For Funct		2e-04
3shu_A	95	Crystal Structure Of Zo-1 Pdz3 Length = 95		2e-04
1um1_A	110	Solution Structure Of Rsgi Ruh-007, Pdz Domain In H		2e-04
2f0a_A	98	Crystal Structure Of Monomeric Uncomplexed Form Of		2e-04
3cby_A	108	The Dvl2 Pdz Domain In Complex With The N1 Inhibito		2e-04
3cbz_A	108	The Dvl2 Pdz Domain In Complex With The N2 Inhibito		2e-04
3cc0_A	108	The Dvl2 Pdz Domain In Complex With The N3 Inhibito		2e-04
1vb7_A	94	Solution Structure Of The Pdz Domain Of Pdz And Lim		2e-04
2i0i_A	85	X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The		2e-04
3cbx_A	105	The Dvl2 Pdz Domain In Complex With The C1 Inhibito		2e-04
1wf8_A	107	Solution Structure Of The Pdz Domain Of Spinophilin		2e-04
2w4f_A	97	Crystal Structure Of The First Pdz Domain Of Human		2e-04
1x5q_A	110	Solution Structure Of The First Pdz Domain Of Scrib		2e-04
1t2m_A	101	Solution Structure Of The Pdz Domain Of Af-6 Length		3e-04
1xz9_A	101	Structure Of Af-6 Pdz Domain Length = 101		3e-04
2ain_A	93	Solution Structure Of The Af-6 Pdz Domain Complexed		3e-04
2vrf_A	95	Crystal Structure Of The Human Beta-2-Syntrophin Pd		3e-04
2dc2_A	103	Solution Structure Of Pdz Domain Length = 103		3e-04
2pdz_A	86	Solution Structure Of The Syntrophin Pdz Domain In		3e-04
1z86_A	87	Solution Structure Of The Pdz Domain Of Alpha-Syntr		3e-04
1qav_A	90	Unexpected Modes Of Pdz Domain Scaffolding Revealed		3e-04
1wh1_A	124	Solution Structure Of The Fourth Pdz Domain Of Kiaa		3e-04
2i04_A	85	X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The		4e-04
2kpk_A	129	Magi-1 Pdz1 Length = 129		4e-04
2iwn_A	97	3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz		5e-04
2fn5_A	94	Nmr Structure Of The Neurabin Pdz Domain (502-594)		6e-04
2ocs_A	88	The Crystal Structure Of The First Pdz Domain Of Hu		7e-04
1wi4_A	109	Solution Structure Of The Pdz Domain Of Syntaxin Bi		7e-04
1n7e_A	97	Crystal Structure Of The Sixth Pdz Domain Of Grip1		7e-04
2lob_A	112	Pdz Domain Of Cal (Cystic Fibrosis Transmembrane Re		7e-04
1uf1_A	128	Solution Structure Of The Second Pdz Domain Of Huma		7e-04
1zub_A	114	Solution Structure Of The Rim1alpha Pdz Domain In C		8e-04
1uep_A	103	Solution Structure Of The Third Pdz Domain Of Human		8e-04
1ihj_A	98	Crystal Structure Of The N-Terminal Pdz Domain Of I		9e-04

>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz Length = 117

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 54/74 (72%), Gaps = 2/74 (2%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
           ++T ++GP    LGFSIVGG  SP G+L I+VKT+F  G A+E+ +L+ GD+IIA+NG  
Sbjct: 28  SITLERGP--DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQS 85
Query: 283 LENKTHAEAIAMFK 296
           LE  TH EA+A+ K
Sbjct: 86  LEGVTHEEAVAILK 99

>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp Target) Length = 120

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
           S+ + TV  +KGP   SLG SI GG  SP G++ IF+  +  +G AA+ +KLR GD I+ 
Sbjct: 22  SMGLRTVEMKKGP-TDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVT 80
Query: 278 INGVPLENKTHAEAIAMFKD 297
           I G   E  TH +A+ + K+
Sbjct: 81  ICGTSTEGMTHTQAVNLLKN 100

>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad- Like Protein Length = 116

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
           G+  LG SIVGG+D+P     I +  +++ G AA + +L  GD+I+ +NGV L N +H E
Sbjct: 26  GRSGLGLSIVGGKDTPLN--AIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEE 83
Query: 291 AIAMFKDIFPQSSKL 305
           AI   +   PQ  +L
Sbjct: 84  AITALRQT-PQKVRL 97

>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Protein Length = 102

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
           +   +GP    LGF+IVGG D      + GI+V  I ++G AA + +L+EGD+I+++NG 
Sbjct: 13  INLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQ 70
Query: 282 PLENKTHAEAIAMFKD 297
            L+N  H +A+ +F++
Sbjct: 71  DLKNLLHQDAVDLFRN 86

>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse- Associated Protein 102 Length = 113

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
           G   LGF+IVGG D      GIFV  I   G A  + +LR GD I+++NGV L N TH +
Sbjct: 24  GSTGLGFNIVGGEDGE----GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQ 79
Query: 291 AIAMFK 296
           A A  K
Sbjct: 80  AAAALK 85

>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human Synaptojanin 2 Binding Protein Length = 120

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
           +   +GP    LGF+IVGG D      + GI+V  I ++G AA + +L+EGD+I+++NG 
Sbjct: 21  INLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQ 78
Query: 282 PLENKTHAEAIAMFKD 297
            L+N  H +A+ +F++
Sbjct: 79  DLKNLLHQDAVDLFRN 94

>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In Complex With A Fluorogenic Peptide-Based Ligand Length = 104

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
           G   LGF+IVGG D      GIFV  I   G A  + +LR GD I+++NGV L N TH +
Sbjct: 21  GSTGLGFNIVGGEDGE----GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQ 76
Query: 291 AIAMFK 296
           A A  K
Sbjct: 77  AAAALK 82

>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz Length = 98

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 225 TFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLE 284
           T +   G+  LG SIVGG D+  G   I +  +++ G A ++ +L  GD+I+ +NG+ L 
Sbjct: 7   TIEISKGRTGLGLSIVGGSDTLLG--AIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLR 64
Query: 285 NKTHAEAIAMFKDIFPQSSKLS 306
             TH EAI + +   PQ  +L+
Sbjct: 65  KATHDEAINVLRQT-PQRVRLT 85

>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Protein Length = 101

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
           +   +GP    LGF+IVGG D      + GI+V  I ++G AA + +L+EGD+I+++NG 
Sbjct: 11  INLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQ 68
Query: 282 PLENKTHAEAIAMFKD 297
            L+N  H +A+ +F++
Sbjct: 69  DLKNLLHQDAVDLFRN 84

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 211 VKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEK 268
           V R K  +  +  +   KGP  K LGFSI GG  +    G+  I+V  I + G A ++ +
Sbjct: 145 VMRRKPPAEKVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGR 202
Query: 269 LREGDEIIAINGVPLENKTHAEAIAMFKDIF 299
           L+ GD+I+A+N V LE+  H +A+A  K+ +
Sbjct: 203 LQIGDKILAVNSVGLEDVMHEDAVAALKNTY 233

>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2 Length = 199

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 211 VKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEK 268
           V R K  +  +  +   KGP  K LGFSI GG  +    G+  I+V  I + G A ++ +
Sbjct: 98  VMRRKPPAEKVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGR 155
Query: 269 LREGDEIIAINGVPLENKTHAEAIAMFKDIF 299
           L+ GD+I+A+N V LE+  H +A+A  K+ +
Sbjct: 156 LQIGDKILAVNSVGLEDVMHEDAVAALKNTY 186

>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant Protein Domain Length = 99

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 215 KSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREG 272
           K +S  +  +   KGP  K LGFSI GG  +    G+  I+V  I + G A ++ KL+ G
Sbjct: 3   KPVSEKIMEIKLIKGP--KGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIG 60
Query: 273 DEIIAINGVPLENKTHAEAIAMFKD 297
           D+++A+N V LE  TH EA+   K+
Sbjct: 61  DKLLAVNNVALEEVTHEEAVTALKN 85

>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz Length = 117

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 230 PGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENK-TH 288
           P    LGFS+VG R   +G LGIFV+ I +   A  + +L+E D+I+AING  L+   TH
Sbjct: 29  PPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITH 88
Query: 289 AEAIAMFK 296
            +AI++ +
Sbjct: 89  QQAISILQ 96

>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand From The Apc Protein Length = 102

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
           F V   K  G  SLG S+ GG ++   + GI+VK I   G A  + ++ +GD ++A+NGV
Sbjct: 14  FEVELAKTDG--SLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGV 71
Query: 282 PLENKTHAEAIAMFKD 297
            LE  TH +A+   ++
Sbjct: 72  SLEGATHKQAVETLRN 87

>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous Polyposis Coli Cytoskeletal Polarity Complex Length = 100

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 215 KSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREG 272
           K +S  +  +   KGP  K LGFSI GG  +    G+  I+V  I + G A ++ KL+ G
Sbjct: 4   KPVSEKIMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIG 61
Query: 273 DEIIAINGVPLENKTHAEAIAMFKD 297
           D+++A+N V LE  TH EA+   K+
Sbjct: 62  DKLLAVNNVCLEEVTHEEAVTALKN 86

>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2 Length = 196

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 211 VKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEK 268
           V R K  +  +  +   KGP  K LGFSI GG  +    G+  I+V  I + G A ++ +
Sbjct: 91  VMRRKPPAEKVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGR 148
Query: 269 LREGDEIIAINGVPLENKTHAEAIAMFKDIF 299
           L+ GD+I+A+N V LE+  H +A+A  K+ +
Sbjct: 149 LQIGDKILAVNSVGLEDVMHEDAVAALKNTY 179

>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin Peptide Length = 189

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 211 VKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEK 268
           V R K  +  +  +   KGP  K LGFSI GG  +    G+  I+V  I + G A ++ +
Sbjct: 88  VMRRKPPAEKVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGR 145
Query: 269 LREGDEIIAINGVPLENKTHAEAIAMFKDIF 299
           L+ GD+I+A+N V LE+  H +A+A  K+ +
Sbjct: 146 LQIGDKILAVNSVGLEDVMHEDAVAALKNTY 176

>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl Length = 94

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
           F V   K  G  SLG S+ GG ++   + GI+VK I   G A  + ++ +GD ++A+NGV
Sbjct: 6   FEVELAKTDG--SLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGV 63
Query: 282 PLENKTHAEAIAMFKD 297
            LE  TH +A+   ++
Sbjct: 64  SLEGATHKQAVETLRN 79

>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv Peptide Ligand Length = 119

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
           G   LGF+IVGG D      GIF+  I   G A  + +LR+GD+I+++NGV L N +H +
Sbjct: 23  GSTGLGFNIVGGEDGE----GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 78
Query: 291 AIAMFKD 297
           A    K+
Sbjct: 79  AAIALKN 85

>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g With C-Terminal Glur-A Peptide Length = 105

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
           +  +   KGP  K LGFSI GG  +    G+  I+V +I + G A ++ KL+ GD+++A+
Sbjct: 4   IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAV 61
Query: 279 NGVPLENKTHAEAIAMFKD 297
           N V LE  TH EA+   K+
Sbjct: 62  NSVGLEEVTHEEAVTALKN 80

>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human Membrane Associated Guanylate Kinase Inverted-2 (Kiaa0705 Protein) Length = 103

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
           FTV  +KG   K  GFSI GGR+     + ++V  + + G A  N ++R GD+II ING 
Sbjct: 13  FTVDMEKGA--KGFGFSIRGGREY---KMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGE 67
Query: 282 PLENKTHAEAIAMFK 296
              + THA AI + K
Sbjct: 68  STRDMTHARAIELIK 82

>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s Length = 105

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
           +  +   KGP  K LGFSI GG  +    G+  I+V  I + G A ++ KL+ GD+++A+
Sbjct: 4   IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 279 NGVPLENKTHAEAIAMFKD 297
           N V LE  TH EA+   K+
Sbjct: 62  NSVSLEEVTHEEAVTALKN 80

>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Complexed With A Peptide Length = 96

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 234 SLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIA 293
           SLG S+ GG ++   + GI+VK +   G A  + ++ +GD ++A+NGV LE  TH +A+ 
Sbjct: 17  SLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE 76
Query: 294 MFKD 297
             ++
Sbjct: 77  TLRN 80

>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Length = 96

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 234 SLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIA 293
           SLG S+ GG ++   + GI+VK +   G A  + ++ +GD ++A+NGV LE  TH +A+ 
Sbjct: 17  SLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE 76
Query: 294 MFKD 297
             ++
Sbjct: 77  TLRN 80

>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In Complex With A C-Terminal Peptide Derived From Cript. Length = 119

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
           G   LGF+I+GG D      GIF+  I   G A  + +LR+GD+I+++NGV L N +H +
Sbjct: 23  GSTGLGFNIIGGEDGE----GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 78
Query: 291 AIAMFKD 297
           A    K+
Sbjct: 79  AAIALKN 85

>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway Of A Pdz Domain Length = 106

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 231 GQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
           G K LGFSI GG  +    G+  I+V  I + G A ++ KL+ GD+++A+N V LE  TH
Sbjct: 11  GSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTH 70
Query: 289 AEAIAMFKD 297
            EA+   K+
Sbjct: 71  EEAVTALKN 79

>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In Complex With A Glur-A C-Terminal Peptide Length = 105

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
           +  +   KGP  K LGFSI GG  +    G+  I+V  I + G A ++ KL+ GD+++A+
Sbjct: 4   IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 279 NGVPLENKTHAEAIAMFKD 297
           N V LE  TH EA+   K+
Sbjct: 62  NSVCLEEVTHEEAVTALKN 80

>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain Of Human Membrane Associated Guanylate Kinase Length = 112

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
           S+  +TV  ++G   K  GFS+ GGR+    N+ ++V  + + G A  + K+R GDEI+ 
Sbjct: 22  SMDFYTVELERGA--KGFGFSLRGGREY---NMDLYVLRLAEDGPAERSGKMRIGDEILE 76
Query: 278 INGVPLENKTHAEAIAMFKD 297
           ING   +N  H+ AI + K+
Sbjct: 77  INGETTKNMKHSRAIELIKN 96

>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g Length = 105

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
           +  +   KGP  K LGFSI GG  +    G+  I+V  I + G A ++ KL+ GD+++A+
Sbjct: 4   IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 279 NGVPLENKTHAEAIAMFKD 297
           N V LE  TH EA+   K+
Sbjct: 62  NSVGLEEVTHEEAVTALKN 80

>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C- Terminal Peptide Of Hpv18 E6. Length = 84

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 228 KGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
           KGP  K LGFSI GG  +    G+  I+V  I + G A ++ KL+ GD+++A+N V LE 
Sbjct: 6   KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEE 63
Query: 286 KTHAEAIAMFKD 297
            TH EA+   K+
Sbjct: 64  VTHEEAVTALKN 75

>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc Length = 105

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
           +  +   KGP  K LGFSI GG  +    G+  I+V  I + G A ++ KL+ GD+++A+
Sbjct: 12  IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 69
Query: 279 NGVPLENKTHAEAIAMFKD 297
           N V LE  TH EA+   K+
Sbjct: 70  NNVCLEEVTHEEAVTALKN 88

>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of Postsynaptic Density-95 Length = 95

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 228 KGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
           KGP  K LGFSI GG  +    G+  I+V  I + G A ++ +L+ GD+I+A+N V LE+
Sbjct: 11  KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLED 68
Query: 286 KTHAEAIAMFKDIF 299
             H +A+A  K+ +
Sbjct: 69  VMHEDAVAALKNTY 82

>pdb|2DB5|A Chain A, Solution Structure Of The First Pdz Domain Of Inad-Like Protein Length = 128

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 230 PGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL-ENKTH 288
           P    LGFS+V  R    G + IFVK +     A  +++L+E D+I+AIN  PL +N +H
Sbjct: 34  PSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISH 93
Query: 289 AEAIAMFK 296
            +AIA+ +
Sbjct: 94  QQAIALLQ 101

>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18 Papillomavirus E6 Peptide Length = 97

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 228 KGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
           KGP  K LGFSI GG  +    G+  I+V  I + G A ++ KL+ GD+++A+N V LE 
Sbjct: 7   KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEE 64
Query: 286 KTHAEAIAMFKD 297
            TH EA+   K+
Sbjct: 65  VTHEEAVTALKN 76

>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2 Length = 117

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEI 275
           S+++  +   KGP  K LGFSI GG  +    G+  I+V  I   G A ++ +L+ GD +
Sbjct: 22  SMTVVEIKLFKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRL 79
Query: 276 IAINGVPLENKTHAEAIAMFKD 297
           + +N   LE  TH EA+A+ K+
Sbjct: 80  LMVNNYSLEEVTHEEAVAILKN 101

>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human Dlg3 Length = 94

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEI 275
           S+++  V   KGP  K LGFSI GG  +    G+  I++  I + G A ++ +L+ GD +
Sbjct: 1   SMTIMEVNLLKGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRL 58
Query: 276 IAINGVPLENKTHAEAIAMFKD 297
           +A+N   L++  H EA+A  K+
Sbjct: 59  LAVNNTNLQDVRHEEAVASLKN 80

>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1) Length = 92

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
            T+  QK PG K LG SIVG R+    + G+FV  I + G A  + +L +GD+I+ +NG 
Sbjct: 6   LTIGLQKKPG-KGLGLSIVGKRN----DTGVFVSDIVKGGIADADGRLMQGDQILMVNGE 60
Query: 282 PLENKTHAEAIAMFK 296
            + N T     A+ K
Sbjct: 61  DVRNATQEAVAALLK 75

>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs Large Homologue 2, Dlg2 Length = 102

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
           G   LGF+IVGG D      GIFV  I   G A  + +L+ GD+I+++NG+ L   +H +
Sbjct: 12  GSTGLGFNIVGGEDGE----GIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQ 67
Query: 291 AIAMFK 296
           A A  K
Sbjct: 68  AAAALK 73

>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 98

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
           G   LGF+IVGG        GIF+  I   G A  + +LR+GD+I+++NGV L N +H +
Sbjct: 15  GSTGLGFNIVGGEXGE----GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 70
Query: 291 AIAMFKD 297
           A    K+
Sbjct: 71  AAIALKN 77

>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Scribble (Kiaa0147 Protein) Length = 105

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 232 QKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
           ++ LGFSI GG+ S     G+ GIFV  I + G A     L+ GD +++INGV +    H
Sbjct: 17  ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARH 76
Query: 289 AEAIAMFKDIFPQSSKL 305
             A+++     P  + L
Sbjct: 77  DHAVSLLTAASPTIALL 93

>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 104

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
           G   LGF+IVGG        GIF+  I   G A  + +LR+GD+I+++NGV L N +H +
Sbjct: 20  GSTGLGFNIVGGEXGE----GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 75
Query: 291 AIAMFKD 297
           A    K+
Sbjct: 76  AAIALKN 82

>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase 1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of Neurabin Length = 170

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 176 KFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLS-LSMFTVTFQKGPGQKS 234
           KFSC    I      S  D++R N    P  ++A  +  K +  L +F V  +K   +  
Sbjct: 37  KFSCA--PIKVFNTYSNEDYDRRNDDVDPVAASAEYELEKRVEKLELFPVELEKD--EDG 92
Query: 235 LGFSIVG---GRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEA 291
           LG SI+G   G D+    LGIFVKT+ + G A  + +++  D+I+ ++G+ L   T   A
Sbjct: 93  LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFA 152
Query: 292 IAMFKD 297
             + ++
Sbjct: 153 ATVLRN 158

>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain Length = 102

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
           +T ++G     LGFSI GG D+P    + GIF+  I   G AAE+ +LR  D I+ +N V
Sbjct: 13  ITLERG--NSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEV 70
Query: 282 PLENKTHAEAIAMFKD 297
            +   +H++A+   K+
Sbjct: 71  DVSEVSHSKAVEALKE 86

>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad- Like Protein Length = 111

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 13  DDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQE 72
           +D + LG  I     G   S  ++  I PGG   RDGR   GD ++K+    ++G+T ++
Sbjct: 23  NDGSGLGFGIV----GGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQ 78
Query: 73  AREALNNKDSHVEIVICRNPDDAKSATN 100
             + L N  + V +++ R+P    S T+
Sbjct: 79  VAQVLRNCGNSVRMLVARDPAGDISVTS 106

>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human Cdna, Kiaa1095 Length = 107

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGR---DSPKGNL--GIFVKTIFQSGQAAENEKLREGDEII 276
            T+   +  G  SLGF+I+GGR   D+  G+   GIFV  I  SG AA+   L+  D II
Sbjct: 10  LTLVLHRDSG--SLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRII 67
Query: 277 AINGVPLENKTHAEAIAMFK 296
            +NG  L   TH +A+  FK
Sbjct: 68  EVNGRDLSRATHDQAVEAFK 87

>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc Length = 107

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
           +T ++G     LGFSI GG D+P    +  IF+  I   G AA++ +LR  D I+ +N V
Sbjct: 15  ITLERG--NSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEV 72
Query: 282 PLENKTHAEAIAMFKD 297
            + + TH++A+   K+
Sbjct: 73  DVRDVTHSKAVEALKE 88

>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95 Length = 91

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 231 GQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
           G   LGFSI GG D+P    +  IF+  I   G AA++ +LR  D I+ +N V +   TH
Sbjct: 11  GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 70
Query: 289 AEAIAMFKD 297
           + A+   K+
Sbjct: 71  SAAVEALKE 79

>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With Ve-Cadherin C-Terminus Length = 111

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 230 PGQKSLGFSIVGGRDSPK-GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
            G   LG S+ G R      +LGIFVK+I   G A+++ +LR  D++IA+NG  L  K +
Sbjct: 18  SGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKAN 77
Query: 289 AEAIAMFK 296
            EA+   +
Sbjct: 78  QEAMETLR 85

>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3 Length = 104

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 230 PGQKSLGFSIVGGRDSPK-GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
            G   LG S+ G R      +LGIFVK+I   G A+++ +LR  D++IA+NG  L  K +
Sbjct: 15  SGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKAN 74
Query: 289 AEAIAMFK 296
            EA+   +
Sbjct: 75  QEAMETLR 82

>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of Hypothetical Kiaa0559 Protein From Human Cdna Length = 117

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 235 LGFSIVGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
           LG  IVGG++ P   G +G ++  I   G A +  KL EG +++  NG+PL +KT+ E
Sbjct: 32  LGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEE 89

>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human Kiaa1526 Protein Length = 101

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
           V+ ++    + LGFSI GG +     +GI+V ++ + G  AE E LR GD+I+ +N   L
Sbjct: 12  VSLRRAKAHEGLGFSIRGGSEH---GVGIYV-SLVEPGSLAEKEGLRVGDQILRVNDKSL 67
Query: 284 ENKTHAEAIAMFK 296
              THAEA+   K
Sbjct: 68  ARVTHAEAVKALK 80

>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95: Structural Basis For Enhanced Affinity And Enzymatic Stability Length = 99

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
           +T ++G     LGFSI GG D+P    +  IF+  I   G AA++ +LR  D I+ +N V
Sbjct: 5   ITLERG--NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV 62
Query: 282 PLENKTHAEAIAMFKD 297
            +   TH+ A+   K+
Sbjct: 63  DVREVTHSAAVEALKE 78

>pdb|1KEF|A Chain A, Pdz1 Of Sap90 Length = 93

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
           +T ++G     LGFSI GG D+P    +  IF+  I   G AA++ +LR  D I+ +N V
Sbjct: 5   ITLERG--NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV 62
Query: 282 PLENKTHAEAIAMFKD 297
            +   TH+ A+   K+
Sbjct: 63  DVREVTHSAAVEALKE 78

>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl Length = 99

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 222 FTVTFQKGPGQKSLGFSIV-----GGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEII 276
           F V   K  G  SLG S+      GG ++   + GI+VK I   G A  + ++ +GD ++
Sbjct: 6   FEVELAKTDG--SLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVL 63
Query: 277 AINGVPLENKTHAEAIAMFKD 297
           A+NGV LE  TH +A+   ++
Sbjct: 64  AVNGVSLEGATHKQAVETLRN 84

>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad- Like Protein Length = 117

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 234 SLGFSIVGGRDSPKGNL-------GIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENK 286
           SLG SIVGG+   K  L       GIF+K + +   A +   L+ GD+I+ ++GV L+N 
Sbjct: 28  SLGISIVGGQTVIK-RLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNA 86
Query: 287 THAEAIAMFKD 297
           +H+EA+   K+
Sbjct: 87  SHSEAVEAIKN 97

>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97 Length = 93

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 231 GQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
           G   LGFSI GG D+P    +  IF+  I   G AA++ +LR  D I+ +N   + + TH
Sbjct: 10  GNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTH 69
Query: 289 AEAIAMFKD 297
           ++A+   K+
Sbjct: 70  SKAVEALKE 78

>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled 2 (Homologous To Drosophila Dsh) Length = 100

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 216 SLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEI 275
           S+SL++ TVT         LG SIVG + + +G+ GI++ +I + G  A + ++  GD +
Sbjct: 1   SMSLNIITVTLNM-EKYNFLGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDML 58
Query: 276 IAINGVPLENKTHAEAIAMFKDI 298
           + +N +  EN ++ +A+ + +DI
Sbjct: 59  LQVNDMNFENMSNDDAVRVLRDI 81

>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852 Length = 127

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 231 GQKSLGFSIVGGRDSPKG-NLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHA 289
           G   LG S+ G +    G +LGIF+K+I   G A ++ +LR  D++IA+NG  L  K++ 
Sbjct: 35  GSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNH 94
Query: 290 EAIAMFK 296
           EA+   +
Sbjct: 95  EAMETLR 101

>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2 Domain (Pdz2b) Of Ptp-Bas (Hptp1e) Length = 108

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 234 SLGFSIV-----GGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
           SLG S+      GG ++   + GI+VK +   G A  + ++ +GD ++A+NGV LE  TH
Sbjct: 21  SLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATH 80
Query: 289 AEAIAMFKD 297
            +A+   ++
Sbjct: 81  KQAVETLRN 89

>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558) Length = 111

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
           +  Q   G + LGFSI     +  G+  I+VK I   G A ++ +L+ GD +I +NGV L
Sbjct: 13  LNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDL 72
Query: 284 ENKTHAEAIAMFK 296
             K+  E +++ +
Sbjct: 73  AGKSQEEVVSLLR 85

>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of Alpha- Syntrophin Length = 263

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 199 NVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIF 258
           N AA P    A  + P++L L    VT +K      LG SI GGR++    + I +  IF
Sbjct: 58  NGAAEPGA--APPQLPEALLLQRRRVTVRKA-DAGGLGISIKGGREN---KMPILISKIF 111
Query: 259 QSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
           +   A + E L  GD I+++NG  L + TH EA+   K
Sbjct: 112 KGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALK 149

>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3 Length = 97

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
           +  Q   G + LGFSI     +  G+  I+VK I   G A ++ +L+ GD +I +NGV L
Sbjct: 7   LNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDL 66
Query: 284 ENKTHAEAIAMFK 296
             K+  E +++ +
Sbjct: 67  AGKSQEEVVSLLR 79

>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With Its Inhibitor Length = 90

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
           LG SIVG + + +G+ GI++ +I + G  A + ++  GD ++ +N V  EN ++ +A+ +
Sbjct: 15  LGISIVG-QSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRV 73
Query: 295 FKDIFPQSSKLS 306
            ++I  Q+  +S
Sbjct: 74  LREIVSQTGPIS 85

>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz (Mupp-1) Length = 103

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 233 KSLGFSIVGGRDS----PKGNL--GIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENK 286
           KSLG SIVGGR        G +  GIF+K + +   A +N  L+ GD I+ ++G+ L + 
Sbjct: 16  KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDA 75
Query: 287 THAEAIAMFK 296
           +H +A+   +
Sbjct: 76  SHEQAVEAIR 85

>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz Length = 123

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 233 KSLGFSIVGGRDS----PKGNL--GIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENK 286
           KSLG SIVGGR        G +  GIF+K + +   A +N  L+ GD I+ ++G+ L + 
Sbjct: 36  KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDA 95
Query: 287 THAEAI 292
           +H +A+
Sbjct: 96  SHEQAV 101

>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human Interleukin- 16 Length = 119

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 202 ATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSG 261
            +  +S AT+K+   + +++     ++G G   LGFS+ GG D    N  I V  +F +G
Sbjct: 1   GSSGSSGATLKQLDGIHVTILHK--EEGAG---LGFSLAGGADLE--NKVITVHRVFPNG 53
Query: 262 QAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
            A++   +++G+E+++ING  L+  TH +A+A+ +
Sbjct: 54  LASQEGTIQKGNEVLSINGKSLKGTTHHDALAILR 88

>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human Ligand-of-numb Protein-x (lnx1) In Complex With The C-terminal Peptide From The Coxsackievirus And Adenovirus Receptor Length = 118

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            V  QK PG+ SLG ++ GG    + +L I+V ++   G  + + +++ GD ++ ++GV 
Sbjct: 27  VVNIQKDPGE-SLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVE 85
Query: 283 LENKTHAEAIAMFK 296
           L   + +EA+A+ K
Sbjct: 86  LTEVSRSEAVALLK 99

>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549) Length = 121

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
           G + LGFSI     +  G+  I+VK I   G A ++ +L+ GD +I +NGV L  K+  E
Sbjct: 39  GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEE 98
Query: 291 AIAMFK 296
            +++ +
Sbjct: 99  VVSLLR 104

>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna 2700099c19 Length = 104

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
           VT +K PG + LGF+I GG+ S    LGIF+  +     A     L+EGD+++A+N V  
Sbjct: 19  VTLKKPPGAQ-LGFNIRGGKAS---QLGIFISKVIPDSDA-HRAGLQEGDQVLAVNDVDF 73
Query: 284 ENKTHAEAIAMFK 296
           ++  H++A+ + K
Sbjct: 74  QDIEHSKAVEILK 86

>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain Length = 95

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
           LG SIVG + + +G+ GI++ +I + G  A + ++  GD ++ +N V  EN ++ +A+ +
Sbjct: 12  LGISIVG-QSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRV 70
Query: 295 FKDIFPQSSKLS 306
            ++I  Q+  +S
Sbjct: 71  LREIVSQTGPIS 82

>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase 1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of Spinophilin And The Small Natural Molecular Toxin Nodularin-R Length = 170

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 194 DHNRSNVAATPNNSNATVKRPKSLS-LSMFTVTFQKGPGQKSLGFSIVG---GRDSPKGN 249
           D++R N    P  ++A  +  K +  L +F V  +K    + LG SI+G   G D     
Sbjct: 53  DYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKD--SEGLGISIIGMGAGADMGLEK 110
Query: 250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD 297
           LGIFVKT+ + G A  + +++  D ++ ++G  L   T + A ++ ++
Sbjct: 111 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN 158

>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase 1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of Spinophilin Length = 170

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 194 DHNRSNVAATPNNSNATVKRPKSLS-LSMFTVTFQKGPGQKSLGFSIVG---GRDSPKGN 249
           D++R N    P  ++A  +  K +  L +F V  +K    + LG SI+G   G D     
Sbjct: 53  DYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKD--SEGLGISIIGMGAGADMGLEK 110
Query: 250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD 297
           LGIFVKT+ + G A  + +++  D ++ ++G  L   T + A ++ ++
Sbjct: 111 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN 158

>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex With Connexin-45 Peptide Length = 468

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
           SM  V F+KG    S+G  + GG D     +GIFV  + +   AA+ E L EGD+I+ +N
Sbjct: 1   SMKLVKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAK-EGLEEGDQILRVN 51
Query: 280 GVPLENKTHAEAIAMFKDI 298
            V   N    EA+    D+
Sbjct: 52  NVDFTNIIREEAVLFLLDL 70

>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human Zo-1 Length = 391

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
           SM  V F+KG    S+G  + GG D     +GIFV  + +   AA+ E L EGD+I+ +N
Sbjct: 9   SMKLVKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAK-EGLEEGDQILRVN 59
Query: 280 GVPLENKTHAEAIAMFKDI 298
            V   N    EA+    D+
Sbjct: 60  NVDFTNIIREEAVLFLLDL 78

>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like Protein Length = 124

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 11  VKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
           ++ D N LG+ +      +  S +++  I P G    DGR  +GDEL+++N++ L G + 
Sbjct: 31  LEKDKNGLGLSLAGNKDRSRMSIFVVG-INPEGPAAADGRMRIGDELLEINNQILYGRSH 89
Query: 71  QEAREALNNKDSHVEIVICRNPD 93
           Q A   +    S V++V  RN D
Sbjct: 90  QNASAIIKTAPSKVKLVFIRNED 112

>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human Scribble (Kiaa0147 Protein) Length = 111

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 35  LISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVIC 89
            IS + P GA  RDGR  VG  L++VN + L GLT  EA + L +    + +++C
Sbjct: 47  FISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVC 101

>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human Scribble (Kiaa0147 Protein) Length = 111

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNL------GIFVKTIFQSGQAAENEKLREGDEIIA 277
           +  QK PG++ LG SI GG     GN       GIF+  +  +G A  + +LR G  ++ 
Sbjct: 13  LCIQKAPGER-LGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLE 71
Query: 278 INGVPLENKTHAEAIAMFKDI 298
           +N   L   TH EA+ + + +
Sbjct: 72  VNQQSLLGLTHGEAVQLLRSV 92

>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The C-Terminal Peptide From Nectin-3 Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
           + TVT +K   Q  +G SIV  + + +  LGI+VK++ + G A  + +L  GD++++++G
Sbjct: 12  IITVTLKK---QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 68
Query: 281 ---VPLENKTHAE 290
              V L  +  AE
Sbjct: 69  RSLVGLSQERAAE 81

>pdb|2G5M|B Chain B, Spinophilin Pdz Domain Length = 113

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 11 VKDDSNELGIYIERQDGGAHFS----PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLK 66
          ++ DS  LGI I     GA          +  +  GGA HRDGR  V D L++V+   L 
Sbjct: 10 LEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLV 69
Query: 67 GLTIQEAREALNNKDSHVEIVICR 90
          G+T   A   L N    V  +I R
Sbjct: 70 GVTQSFAASVLRNTKGRVRFMIGR 93

>pdb|2CSJ|A Chain A, Solution Structure Of N-Terminal Pdz Domain From Mouse Tjp2 Length = 117

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
           +TVT QK   ++  G ++ GGRD+P    G   I +  +   G A  +  L+E D ++ +
Sbjct: 16  YTVTLQK-DSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQENDRVVMV 72
Query: 279 NGVPLENKTHAEAIAMFK 296
           NG P+E+  H+ A+   +
Sbjct: 73  NGTPMEDVLHSFAVQQLR 90

>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain Containing Protein 7 Length = 100

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
           + +V  +K P  + LGFS+ GG +     LGIFV  + + G +AE   L  GD+I  +NG
Sbjct: 11  IHSVRVEKSPAGR-LGFSVRGGSEH---GLGIFVSKV-EEGSSAERAGLCVGDKITEVNG 65
Query: 281 VPLENKTHAEAIAMFKDIFPQSSKL 305
           + LE+ T   A+     +   SS+L
Sbjct: 66  LSLESTTMGSAV----KVLTSSSRL 86

>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz Domain Bound To Ical36 (Ansrwptsii) Peptide Length = 87

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
          ++K+D   LGI I    G  H  P LIS I PG    R G  HVGD ++ VN   L+   
Sbjct: 8  LLKEDHEGLGISI--TGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 65
Query: 70 IQEAREALNNKDSHVE 85
           +EA   L+ +   +E
Sbjct: 66 HKEAVTILSQQRGEIE 81

>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7 Homolog B Length = 93

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAI 292
           + LGF+I+GG++    N  I++  +   G A  +  L+ GD+++++NGV +E + H +A+
Sbjct: 16  EGLGFNIMGGKEQ---NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAV 72
Query: 293 AMFK 296
            + K
Sbjct: 73  ELLK 76

>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of Tandem Pdz Domains In Glutamate Receptor Interacting Proteins Length = 196

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 12  KDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQ 71
           K  S ELGI I          P +IS I+ G   HR G   +GD+L+ +++ RL   +++
Sbjct: 115 KKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSME 174
Query: 72  EAREALNNKDSHVEIVICRNPD 93
           +A + L   +  V++ I ++ D
Sbjct: 175 DAVQILQQCEDLVKLKIRKDED 196

>pdb|2H3M|A Chain A, Crystal Structure Of Zo-1 Pdz1 Length = 97

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPK---GNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
           TVT  + PG    G +I GGRD+P    G   I +  + + G A    +L+E D +  +N
Sbjct: 10  TVTLHRAPG-FGFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMVN 66
Query: 280 GVPLENKTHAEAIAMFK 296
           GV ++N  HA A+   +
Sbjct: 67  GVSMDNVEHAFAVQQLR 83

>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer Length = 91

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
           LG SIVG + + +G+ GI++ +I + G  A + ++  GD ++ +N +  EN ++ +A+ +
Sbjct: 13  LGISIVG-QSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRV 71
Query: 295 FKDI 298
            +DI
Sbjct: 72  LRDI 75

>pdb|2RRM|A Chain A, Interplay Between Phosphatidyl-Inositol-Phosphates And Claudins Upon Binding To The 1st Pdz Domain Of Zonula Occludens 1 Length = 100

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
           TVT  + PG    G +I GGRD+P    G   I +  + + G A    +L+E D +  +N
Sbjct: 13  TVTLHRAPG-FGFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMVN 69
Query: 280 GVPLENKTHAEAIAMFK 296
           GV ++N  HA A+   +
Sbjct: 70  GVSMDNVEHAFAVQQLR 86

>pdb|2H2C|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Derived Ligand (Wrrttwv) Length = 107

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
           TVT  + PG    G +I GGRD+P    G   I +  + + G A    +L+E D +  +N
Sbjct: 10  TVTLHRAPG-FGFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMVN 66
Query: 280 GVPLENKTHAEAIAMFK 296
           GV ++N  HA A+   +
Sbjct: 67  GVSMDNVEHAFAVQQLR 83

>pdb|2H2B|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-derived Ligand (wrrttyl) Length = 107

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
           TVT  + PG    G +I GGRD+P    G   I +  + + G A    +L+E D +  +N
Sbjct: 10  TVTLHRAPG-FGFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMVN 66
Query: 280 GVPLENKTHAEAIAMFK 296
           GV ++N  HA A+   +
Sbjct: 67  GVSMDNVEHAFAVQQLR 83

>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human Zo-1 Maguk Protein Length = 124

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
           SM  V F+KG    S+G  + GG D     +GIFV  + +   AA+ E L EGD+I+ +N
Sbjct: 29  SMKLVKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAK-EGLEEGDQILRVN 79
Query: 280 GVPLENKTHAEAIAMFKDI 298
            V   N    EA+    D+
Sbjct: 80  NVDFTNIIREEAVLFLLDL 98

>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein) Length = 123

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
            GF+I+GG D P   L   VK++   G AA++ K+  GD I+ IN V +   THA+ + +
Sbjct: 32  FGFTIIGG-DEPDEFLQ--VKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKL 88
Query: 295 FKDI 298
           F+ +
Sbjct: 89  FQSV 92

>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse Harmonin Length = 118

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 232 QKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEA 291
           + SL  ++ GG DSP G   + V  +++ G A  +  + +GDEI+AING  + + T AEA
Sbjct: 27  EGSLDLALEGGVDSPVGK--VVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEA 84
Query: 292 IAMFKDIFPQSS 303
            A  +  + Q  
Sbjct: 85  EAALQKAWNQGG 96

>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3 Length = 102

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 231 GQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
           G   LGFSI GG D+P    + GIF+  I   G AA + +L   D ++ +N V +    H
Sbjct: 13  GNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVH 72
Query: 289 AEAIAMFKDIFP 300
           + A+   K+  P
Sbjct: 73  SRAVEALKEAGP 84

>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human Homolog Of Discs Large Protein Length = 99

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
           G   LGF+IVGG D      GIF+  I   G A  + +LR+GD II++N V L
Sbjct: 16  GSTGLGFNIVGGEDGE----GIFISFILAGGPADLSGELRKGDRIISVNSVDL 64

>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain Length = 95

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
           LG SIVG + + +G+ GI++ +I + G  A + ++  GD ++ +N +  EN ++ +A+ +
Sbjct: 15  LGISIVG-QSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRV 73
Query: 295 FKDI 298
            +DI
Sbjct: 74  LRDI 77

>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function, Nmr, 20 Structures Length = 130

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
           ++ TVT +K      LGFS+ GG+ S  G+  + +  IF+   + ++E ++ GDEI+ + 
Sbjct: 29  TVCTVTLEKM--SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLG 86
Query: 280 GVPLENKTHAEAIAMFKDI 298
           G  ++  T  EA  + K +
Sbjct: 87  GTAMQGLTRFEAWNIIKAL 105

>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3 Length = 95

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
           SM  V F+KG    S+G  + GG D     +GIFV  + +   AA+ E L EGD+I+ +N
Sbjct: 4   SMKLVKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAK-EGLEEGDQILRVN 54
Query: 280 GVPLENKTHAEAIAMFKDI 298
            V   N    EA+    D+
Sbjct: 55  NVDFTNIIREEAVLFLLDL 73

>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human Cdna Length = 110

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
           +FTV  ++GP    LG  ++ G  +  G  G++++T+     AA + +L  GD I+ +NG
Sbjct: 9   VFTVELERGP--SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNG 66
Query: 281 VPLENKTHAEAIAMFK 296
             L    +  A+ + +
Sbjct: 67  SSLLGLGYLRAVDLIR 82

>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus Dishevelled Pdz Domain Length = 98

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
           LG SIVG + + +G+ GI++ +I + G  A + ++  GD ++ +N +  EN ++ +A+ +
Sbjct: 15  LGISIVG-QSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRV 73
Query: 295 FKDI 298
            +DI
Sbjct: 74  LRDI 77

>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory Peptide Length = 108

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
           LG SIVG + + +G+ GI++ +I + G  A + ++  GD ++ +N +  EN ++ +A+ +
Sbjct: 19  LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 295 FKDI 298
            +DI
Sbjct: 78  LRDI 81

>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory Peptide Length = 108

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
           LG SIVG + + +G+ GI++ +I + G  A + ++  GD ++ +N +  EN ++ +A+ +
Sbjct: 19  LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 295 FKDI 298
            +DI
Sbjct: 78  LRDI 81

>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory Peptide Length = 108

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
           LG SIVG + + +G+ GI++ +I + G  A + ++  GD ++ +N +  EN ++ +A+ +
Sbjct: 19  LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 295 FKDI 298
            +DI
Sbjct: 78  LRDI 81

>pdb|1VB7|A Chain A, Solution Structure Of The Pdz Domain Of Pdz And Lim Domain 2 Length = 94

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 231 GQKSLGFSIVGGRD--SPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
           G    GF I GGRD  +P     I V  + + G+A E   LR GD I+AING   EN  H
Sbjct: 14  GPAPWGFRISGGRDFHTP-----IIVTKVTERGKA-EAADLRPGDIIVAINGQSAENMLH 67
Query: 289 AEA 291
           AEA
Sbjct: 68  AEA 70

>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C- Terminal Peptide Of Hpv18 E6 Length = 85

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
           G   LGF+IVGG D      GIF+  I   G A  + +LR+GD II++N V L
Sbjct: 13  GSTGLGFNIVGGEDGE----GIFISFILAGGPADLSGELRKGDRIISVNSVDL 61

>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory Peptide Length = 105

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
           LG SIVG + + +G+ GI++ +I + G  A + ++  GD ++ +N +  EN ++ +A+ +
Sbjct: 19  LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 295 FKDI 298
            +DI
Sbjct: 78  LRDI 81

>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of SpinophilinNEURABINII PROTEIN Length = 107

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 216 SLSLSMFTVTFQKGPGQKSLGFSIVG---GRDSPKGNLGIFVKTIFQSGQAAENEKLREG 272
           S  L +F V  +K   +  LG SI+G   G D+    LGIFVKT+ + G A  + +++  
Sbjct: 5   SSGLELFPVELEKD--EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVN 62
Query: 273 DEIIAINGVPLENKTHAEAIAMFKD 297
           D+I+ ++G+ L   T   A  + ++
Sbjct: 63  DQIVEVDGISLVGVTQNFAATVLRN 87

>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1 Length = 97

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSP--KGN-LGIFVKTIFQSGQAAENEKLREGDE 274
           S+   T+T  +  G   LG SI GG+ S   KG+  GIF+  + + G AA    +R GD+
Sbjct: 1   SMEELTLTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAAR-AGVRVGDK 57
Query: 275 IIAINGVPLENKTHAEAIAMFK 296
           ++ +NGV L+   H EA+   +
Sbjct: 58  LLEVNGVALQGAEHHEAVEALR 79

>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble Homolog Protein (Hscrib) Length = 110

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 206 NSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSP--KGN-LGIFVKTIFQSGQ 262
            S+ +   P  +     T+T  +  G   LG SI GG+ S   KG+  GIF+  + + G 
Sbjct: 1   GSSGSSGEPARIEEEELTLTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEGP 58
Query: 263 AAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
           AA    +R GD+++ +NGV L+   H EA+   +
Sbjct: 59  AA-RAGVRVGDKLLEVNGVALQGAEHHEAVEALR 91

>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6 Length = 101

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
           + TVT +K   Q  +G SIV  + + +  LGI+VK++ + G A  + +L  GD++++++G
Sbjct: 6   IITVTLKK---QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 62
Query: 281 VPL 283
             L
Sbjct: 63  RSL 65

>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain Length = 101

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
           + TVT +K   Q  +G SIV  + + +  LGI+VK++ + G A  + +L  GD++++++G
Sbjct: 12  IITVTLKK---QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 68
Query: 281 VPL 283
             L
Sbjct: 69  RSL 71

>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With The C-Terminal Peptide From The Bcr Protein Length = 93

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
           + TVT +K   Q  +G SIV  + + +  LGI+VK++ + G A  + +L  GD++++++G
Sbjct: 6   IITVTLKK---QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 62
Query: 281 VPL 283
             L
Sbjct: 63  RSL 65

>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz Domain Length = 95

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
           LG SI GGR++    + I +  IF    A ++  LR GD I+++NG  L   TH +A+  
Sbjct: 17  LGISIKGGREN---RMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQA 73
Query: 295 FK 296
            K
Sbjct: 74  LK 75

>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain Length = 103

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
          ++K+D   LGI I    G  H  P LIS I PG    R G  HVGD ++ VN   L+   
Sbjct: 15 LLKEDHEGLGISI--TGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 72
Query: 70 IQEAREALNNKDSHVE 85
           +EA   L+ +   +E
Sbjct: 73 HKEAVTILSQQRGEIE 88

>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex With The Peptide Gvkeslv, Nmr, 15 Structures Length = 86

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
           LG SI GGR++    + I +  IF+   A + E L  GD I+++NG  L + TH EA+  
Sbjct: 14  LGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQA 70
Query: 295 FK 296
            K
Sbjct: 71  LK 72

>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin Length = 87

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
           LG SI GGR++    + I +  IF+   A + E L  GD I+++NG  L + TH EA+  
Sbjct: 14  LGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQA 70
Query: 295 FK 296
            K
Sbjct: 71  LK 72

>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By Structure Of Nnos-Syntrophin Complex Length = 90

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
           LG SI GGR++    + I +  IF+   A + E L  GD I+++NG  L + TH EA+  
Sbjct: 18  LGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQA 74
Query: 295 FK 296
            K
Sbjct: 75  LK 76

>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095 Protein Length = 124

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
           V   +   Q  LG ++   R   + ++GI++  I  +  AA++ ++REGD II ING+ +
Sbjct: 23  VDLYRMNSQDKLGLTVCY-RTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEV 81
Query: 284 ENKTHAEAI 292
           +N+  A A+
Sbjct: 82  QNREEAVAL 90

>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C- Terminal Peptide Of Hpv18 E6 Length = 85

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAI 292
           +  GF++VGG D P   L I  K++   G AA + K+  GD I+++N   +   THA+ +
Sbjct: 11  RGFGFTVVGG-DEPDEFLQI--KSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVV 67
Query: 293 AMFKDI 298
            +F+ I
Sbjct: 68  KIFQSI 73

>pdb|2KPK|A Chain A, Magi-1 Pdz1 Length = 129

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAI 292
           +  GF++VGG D P   L I  K++   G AA + K+  GD I+++N   +   THA+ +
Sbjct: 29  RGFGFTVVGG-DEPDEFLQI--KSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVV 85
Query: 293 AMFKDI 298
            +F+ I
Sbjct: 86  KIFQSI 91

>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp Target) Length = 97

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 18 LGIYIERQDGGAHFSP--YLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEARE 75
          LGI I    G     P    +  I    A+  DGR  +GD++I V+   L+G T Q+A E
Sbjct: 17 LGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVE 76
Query: 76 ALNNKDSHVEIVICR 90
           L +    V + + R
Sbjct: 77 VLRHTGQTVLLTLMR 91

>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594) Length = 94

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 219 LSMFTVTFQKGPGQKSLGFSIVG---GRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEI 275
           + +F V  +K   +  LG SI+G   G D+    LGIFVKT+ + G A  + +++  D+I
Sbjct: 3   MELFPVELEKD--EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQI 60
Query: 276 IAINGVPLENKTHAEAIAMFKD 297
           + ++G+ L   T   A  + ++
Sbjct: 61  VEVDGISLVGVTQNFAATVLRN 82

>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human Nherf-2 (slc9a3r2) Length = 88

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
           G++  GF + G     KG  G F++ + + G  AE   LR GD ++ +NGV +E +TH +
Sbjct: 10  GEQGYGFHLHG----EKGRRGQFIRRV-EPGSPAEAAALRAGDRLVEVNGVNVEGETHHQ 64
Query: 291 AIAMFKDIFPQSSKL 305
            +   K +  Q+  L
Sbjct: 65  VVQRIKAVEGQTRLL 79

>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding Protein 4 Length = 109

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 5   FKVFRVVKDDSNELGIY--IERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVND 62
           F+V  V K+    L I   I R +G   +    I  + PGG  ++DGR   GD+L+ +N 
Sbjct: 16  FRVITVTKETGLGLKILGGINRNEGPLVY----IHEVIPGGDCYKDGRLKPGDQLVSINK 71
Query: 63  KRLKGLTIQEAREALN----NKDSHVEIVICRN 91
           + + G++ +EA+  +       +S  EI   R+
Sbjct: 72  ESMIGVSFEEAKSIITRAKLRSESPWEIAFIRS 104

>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 Length = 97

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 31  FSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
           F P +IS +  GG   R G  H+GD ++ +N   LKG  + EA   L      V + I +
Sbjct: 29  FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKI-K 87
Query: 91  NPDDAKSATN 100
              DA+ A++
Sbjct: 88  KQTDAQPASS 97

>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane Regulator-Associated Ligand) Length = 112

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 10  VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
           ++K+D   LGI I    G  H  P LIS I PG    R G  HVGD ++ VN   L+   
Sbjct: 33  LLKEDHEGLGISI--TGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 90
Query: 70  IQEAREALNNKDSHVE 85
            +EA   L+ +   +E
Sbjct: 91  HKEAVTILSQQRGEIE 106

>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Kiaa1526 Protein Length = 128

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAI 292
           +SLG +I GG +     LGI++ T    G  AE   L+ GD+I+ +NG    N  H EA+
Sbjct: 32  RSLGLTIRGGAEY---GLGIYI-TGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAV 87
Query: 293 AMFK 296
            + K
Sbjct: 88  RLLK 91

>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In Complex With An Elks1b C-Terminal Peptide Length = 114

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEA 291
           LG  +VGG+ +  G LG F+  + +   A     LR GDE++  NG PL   T+ E 
Sbjct: 39  LGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEV 95

>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein) Length = 103

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 232 QKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEA 291
           +   GF I+GG D P     I +  +   G A  + +L  GDE++ ++G+P+  KTH   
Sbjct: 19  ESGFGFRILGG-DEP--GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYV 75
Query: 292 IAMF 295
           I + 
Sbjct: 76  IDLM 79

>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In Complex With A Norpa C-Terminal Peptide Length = 98

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 224 VTFQKGPGQKSLGFSIVGG--RDSPKG-NLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
           VT  K  G+KS G  IV G  +DSP     GIF+K I     A    +L+ GD I+++NG
Sbjct: 9   VTLDK-TGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNG 67
Query: 281 VPLENKTHAEAIAMFKD 297
             + N T    I + K+
Sbjct: 68  KDVRNSTEQAVIDLIKE 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	306
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-31
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-14
2fne_A	117	Multiple PDZ domain protein; structural protein, s	2e-31
2fne_A	117	Multiple PDZ domain protein; structural protein, s	7e-13
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	7e-31
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	5e-13
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	2e-29
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	1e-14
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	3e-29
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	2e-14
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	3e-29
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	4e-12
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	5e-29
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	7e-13
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	6e-29
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	9e-13
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	1e-28
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	3e-14
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-28
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	1e-12
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	4e-28
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	2e-14
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	5e-28
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	3e-14
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	1e-27
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	3e-12
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	2e-27
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	1e-15
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	2e-27
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	2e-11
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	2e-27
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	5e-13
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	2e-27
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	7e-12
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	2e-27
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	5e-12
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	4e-27
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	3e-13
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	4e-27
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	7e-12
2awx_A	105	Synapse associated protein 97; membrane protein, s	5e-27
2awx_A	105	Synapse associated protein 97; membrane protein, s	4e-13
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	6e-27
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	2e-11
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	1e-26
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	2e-14
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	2e-26
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	9e-14
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	4e-26
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	5e-14
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	4e-26
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	7e-13
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	5e-26
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	3e-14
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	9e-26
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	2e-12
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	1e-25
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	2e-12
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	1e-25
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	4e-11
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	1e-25
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	6e-14
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	3e-25
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	8e-14
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	4e-25
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	5e-13
2opg_A	98	Multiple PDZ domain protein; structural protein, s	5e-25
2opg_A	98	Multiple PDZ domain protein; structural protein, s	4e-15
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	7e-25
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	4e-14
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	7e-25
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	4e-16
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	8e-25
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	1e-12
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	1e-24
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	3e-15
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	1e-24
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	5e-13
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	1e-24
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	1e-13
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	1e-24
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	9e-14
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	1e-24
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	6e-13
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	1e-24
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	3e-12
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	1e-24
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	2e-14
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	2e-24
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	1e-14
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	2e-24
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	3e-14
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	2e-24
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	1e-13
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	2e-24
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	2e-13
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	3e-24
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	4e-14
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	3e-24
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	1e-09
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	3e-24
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	5e-14
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	3e-24
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	6e-13
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	3e-24
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	2e-14
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	3e-24
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	2e-10
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	4e-24
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	3e-13
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	4e-24
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	3e-10
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	5e-24
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	2e-12
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	7e-24
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	5e-15
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	8e-24
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	2e-14
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	8e-24
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	8e-10
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	1e-23
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	1e-13
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	1e-23
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	1e-14
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	2e-23
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	1e-10
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	9e-23
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	3e-13
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	1e-22
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	2e-15
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	1e-22
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	2e-16
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	2e-22
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	2e-09
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	2e-22
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	7e-13
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	3e-22
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	2e-11
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	4e-22
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	8e-15
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	7e-22
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	3e-15
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	8e-22
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	5e-13
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	1e-21
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	7e-10
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	2e-21
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	4e-14
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	2e-21
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	4e-14
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	3e-21
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	2e-20
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	1e-14
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	1e-13
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	3e-21
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	4e-13
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	7e-21
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	1e-10
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	7e-21
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	4e-14
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	8e-21
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	2e-12
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	1e-20
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	8e-15
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	2e-20
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	2e-10
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	2e-20
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	5e-19
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	3e-15
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	9e-15
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	3e-20
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	7e-16
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	4e-20
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	1e-09
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	4e-20
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	4e-13
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	6e-20
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	2e-08
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	1e-19
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	8e-09
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	1e-19
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	3e-10
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	2e-19
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	4e-09
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	2e-19
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	2e-08
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	3e-19
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	2e-18
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	6e-18
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	6e-15
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	3e-19
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	7e-09
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	5e-19
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	4e-09
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	6e-19
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	5e-17
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	6e-19
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	2e-09
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	7e-19
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	1e-09
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	7e-19
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	5e-09
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	8e-19
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	2e-13
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	9e-19
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	3e-09
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	9e-19
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	2e-08
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	1e-18
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	1e-13
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	2e-18
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	9e-11
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	2e-18
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	1e-08
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	2e-18
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	3e-09
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	2e-18
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	4e-10
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	2e-18
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	6e-08
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	5e-18
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	5e-13
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	5e-18
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	2e-09
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	1e-17
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	2e-17
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	3e-09
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	2e-17
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	7e-17
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	2e-12
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	8e-17
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	4e-07
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	8e-17
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	1e-16
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	1e-14
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	4e-08
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	9e-17
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	2e-07
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	1e-16
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	4e-07
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	2e-16
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	7e-14
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	3e-16
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	2e-14
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	1e-15
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	1e-05
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	2e-15
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	5e-07
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	2e-15
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	2e-07
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	3e-15
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	4e-12
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	4e-15
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	3e-08
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	7e-15
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	3e-09
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	7e-15
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	5e-06
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	8e-15
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	4e-07
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	1e-14
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	7e-13
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	2e-14
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	2e-14
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	4e-14
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	1e-06
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	4e-14
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	6e-05
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	4e-14
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	2e-06
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	5e-14
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	1e-05
2d90_A	102	PDZ domain containing protein 1; structural genomi	5e-14
2d90_A	102	PDZ domain containing protein 1; structural genomi	1e-05
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	7e-14
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	7e-14
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	2e-05
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	8e-14
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	5e-06
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	1e-13
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	3e-06
2ego_A	96	General receptor for phosphoinositides 1- associat	1e-13
2ego_A	96	General receptor for phosphoinositides 1- associat	4e-06
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	2e-13
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	3e-05
3khf_A	99	Microtubule-associated serine/threonine-protein ki	5e-13
3khf_A	99	Microtubule-associated serine/threonine-protein ki	8e-06
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	7e-13
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	8e-06
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	8e-13
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	2e-04
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	1e-12
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	4e-05
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	1e-12
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	3e-06
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	3e-12
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	5e-10
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	1e-05
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	1e-04
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	4e-12
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	1e-06
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	4e-12
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	5e-06
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	6e-12
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	3e-06
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	6e-12
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	3e-10
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	8e-12
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	4e-04
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	8e-12
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	4e-04
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	2e-11
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	1e-04
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	3e-11
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	5e-05
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	5e-11
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	2e-07
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	2e-10
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	8e-05
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	2e-10
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	6e-10
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	5e-08
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	2e-07
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	2e-08
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	3e-04
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	3e-06
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	7e-05

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score =  113 bits (284), Expect = 2e-31
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query: 195 HNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFV 254
           H+ S+       +             + TV  +KGP   SLG SI GG  SP G++ IF+
Sbjct: 5   HHHSSGVDLGTENLYFQSM------GLRTVEMKKGPT-DSLGISIAGGVGSPLGDVPIFI 57

Query: 255 KTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
             +  +G AA+ +KLR GD I+ I G   E  TH +A+ + K
Sbjct: 58  AMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLK 99

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 68.2 bits (167), Expect = 1e-14
 Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 1/98 (1%)

Query: 2   EKQFKVFRVVKDDSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
               +   + K  ++ LGI I           P  I+ + P G   +  +  VGD ++ +
Sbjct: 22  SMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTI 81

Query: 61  NDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSA 98
                +G+T  +A   L N    +E+ +    D ++++
Sbjct: 82  CGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSETS 119

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score =  112 bits (283), Expect = 2e-31
 Identities = 42/102 (41%), Positives = 61/102 (59%), Gaps = 7/102 (6%)

Query: 195 HNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFV 254
           H+ S+       +      P+       ++T ++GP    LGFSIVGG  SP G+L I+V
Sbjct: 5   HHHSSGVDLGTENLYFQSMPQ-----CKSITLERGP--DGLGFSIVGGYGSPHGDLPIYV 57

Query: 255 KTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
           KT+F  G A+E+ +L+ GD+IIA+NG  LE  TH EA+A+ K
Sbjct: 58  KTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILK 99

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 63.1 bits (154), Expect = 7e-13
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 14  DSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQE 72
             + LG  I           P  +  +   GA   DGR   GD++I VN + L+G+T +E
Sbjct: 34  GPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEE 93

Query: 73  AREALNNKDSHVEIVICRNPD 93
           A   L      V +++  + +
Sbjct: 94  AVAILKRTKGTVTLMVLSSDE 114

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score =  111 bits (280), Expect = 7e-31
 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 2/103 (1%)

Query: 194 DHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIF 253
           D N S  +A   ++ + V    +   ++ TVT +K      LGFS+ GG+ S  G+  + 
Sbjct: 3   DLNSSTDSAASASAASDVSVESTAEATVCTVTLEKMSA--GLGFSLEGGKGSLHGDKPLT 60

Query: 254 VKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
           +  IF+   + ++E ++ GDEI+ + G  ++  T  EA  + K
Sbjct: 61  INRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIK 103

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 64.1 bits (156), Expect = 5e-13
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 10  VVKDDSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
            ++  S  LG  +E  +       P  I+ I  G A  +      GDE++++    ++GL
Sbjct: 34  TLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGL 93

Query: 69  TIQEAREAL-NNKDSHVEIVICRNPDDAKSAT 99
           T  EA   +    D  V IVI R    +K  T
Sbjct: 94  TRFEAWNIIKALPDGPVTIVIRRKSLQSKETT 125

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score =  107 bits (270), Expect = 2e-29
 Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 8/103 (7%)

Query: 194 DHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIF 253
            H+ S V     N        K        V  QK PG +SLG ++ GG    + +L I+
Sbjct: 5   HHHSSGVDLGTENLYFQSMHEK-------VVNIQKDPG-ESLGMTVAGGASHREWDLPIY 56

Query: 254 VKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
           V ++   G  + + +++ GD ++ ++GV L   + +EA+A+ K
Sbjct: 57  VISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLK 99

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 1/95 (1%)

Query: 2   EKQFKVFRVVKDDSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
               KV  + KD    LG+ +           P  +  +EPGG I RDGR   GD L+ V
Sbjct: 22  SMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNV 81

Query: 61  NDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDA 95
           +   L  ++  EA   L    S + +      + +
Sbjct: 82  DGVELTEVSRSEAVALLKRTSSSIVLKALEVKEGS 116

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score =  106 bits (267), Expect = 3e-29
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
           +F V   K     SLG S+ GG ++   + GI+VK +   G A  + ++ +GD ++A+NG
Sbjct: 6   IFEVELAKNDN--SLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNG 63

Query: 281 VPLENKTHAEAIAMFK 296
           V LE  TH +A+   +
Sbjct: 64  VSLEGATHKQAVETLR 79

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 67.2 bits (165), Expect = 2e-14
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 6  KVFRVV-KDDSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
           +F V    + N LGI +    +         +  + P GA   DGR H GD ++ VN  
Sbjct: 5  DIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGV 64

Query: 64 RLKGLTIQEAREALNNKDSHVEIVICRNPD 93
           L+G T ++A E L N    V +++ +   
Sbjct: 65 SLEGATHKQAVETLRNTGQVVHLLLEKGQS 94

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score =  107 bits (269), Expect = 3e-29
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 2/104 (1%)

Query: 195 HNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFV 254
           H+  +      N                 +  +KG   + LGFSI     +  G+  I+V
Sbjct: 5   HHHHHHHHGSENLYFQGSYNTKKIGKRLNIQLKKGT--EGLGFSITSRDVTIGGSAPIYV 62

Query: 255 KTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
           K I   G A ++ +L+ GD +I +NGV L  K+  E +++ +  
Sbjct: 63  KNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRST 106

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 4/96 (4%)

Query: 2   EKQFKVFRVV-KDDSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
           +K  K   +  K  +  LG  I  R       +P  + +I P GA  +DGR   GD LI+
Sbjct: 26  KKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIE 85

Query: 60  VNDKRLKGLTIQEAREALNN--KDSHVEIVICRNPD 93
           VN   L G + +E    L +   +  V +++ R  D
Sbjct: 86  VNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQED 121

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score =  106 bits (266), Expect = 5e-29
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
             +  +KG   + LGFSI     +  G+  I+VK I   G A ++ +L+ GD +I +NGV
Sbjct: 13  LNIQLKKGT--EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGV 70

Query: 282 PLENKTHAEAIAMFKDI 298
            L  K+  E +++ +  
Sbjct: 71  DLAGKSQEEVVSLLRST 87

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 63.1 bits (154), Expect = 7e-13
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 4/96 (4%)

Query: 2   EKQFKVFRVV-KDDSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
           +K  K   +  K  +  LG  I  R       +P  + +I P GA  +DGR   GD LI+
Sbjct: 7   KKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIE 66

Query: 60  VNDKRLKGLTIQEAREALNN--KDSHVEIVICRNPD 93
           VN   L G + +E    L +   +  V +++ R  +
Sbjct: 67  VNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEE 102

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score =  105 bits (264), Expect = 6e-29
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 4/81 (4%)

Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEI 275
           S+++  V   KGP  K LGFSI GG  +    G+  I++  I + G A ++ +L+ GD +
Sbjct: 1   SMTIMEVNLLKGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRL 58

Query: 276 IAINGVPLENKTHAEAIAMFK 296
           +A+N   L++  H EA+A  K
Sbjct: 59  LAVNNTNLQDVRHEEAVASLK 79

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 62.3 bits (152), Expect = 9e-13
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 10/93 (10%)

Query: 5  FKVFRVV-KDDSNELGIYIERQDGGAHFSPYL------ISHIEPGGAIHRDGRFHVGDEL 57
            +  V        LG  I    GG             I+ I  GGA  +DGR  +GD L
Sbjct: 2  MTIMEVNLLKGPKGLGFSIA---GGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRL 58

Query: 58 IKVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
          + VN+  L+ +  +EA  +L N    V + + +
Sbjct: 59 LAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAK 91

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score =  105 bits (263), Expect = 1e-28
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
           FTV  ++GP    LG  ++ G  +  G  G++++T+     AA + +L  GD I+ +NG 
Sbjct: 10  FTVELERGP--SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGS 67

Query: 282 PLENKTHAEAIAMFK 296
            L    +  A+ + +
Sbjct: 68  SLLGLGYLRAVDLIR 82

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 67.0 bits (164), Expect = 3e-14
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 2/97 (2%)

Query: 6   KVFRVV-KDDSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
            VF V  +   + LG+ +              I  + PG     DGR  +GD +++VN  
Sbjct: 8   YVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGS 67

Query: 64  RLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATN 100
            L GL    A + + +    +  ++ ++  +     +
Sbjct: 68  SLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIH 104

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score =  114 bits (285), Expect = 2e-28
 Identities = 64/330 (19%), Positives = 109/330 (33%), Gaps = 40/330 (12%)

Query: 2   EKQFKVFRVVKDDSNE-LGIYI---ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDEL 57
           E + +   +  +  N  LG  I                I+ I PGGA  +DGR  V D +
Sbjct: 55  EGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSI 114

Query: 58  IKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNII 117
           + VN+  ++ +T   A EAL    S V + + R    A+       ++            
Sbjct: 115 LFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGG 174

Query: 118 INQR---------QKNIVEKSLMPERQVSMPE---IERNKTEVIATTQVSNEKSQTSNCS 165
           +  +            I+E     +          +  N   +          +  +   
Sbjct: 175 VGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYD 234

Query: 166 KIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMF--- 222
            +  KV              P    S   H  + ++ +              S   +   
Sbjct: 235 VVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPV 294

Query: 223 ---------------TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENE 267
                           +   +G     LGF+IVGG D      GIF+  I   G A  + 
Sbjct: 295 AKDLLGEEDIPREPRRIVIHRGST--GLGFNIVGGEDGE----GIFISFILAGGPADLSG 348

Query: 268 KLREGDEIIAINGVPLENKTHAEAIAMFKD 297
           +LR+GD+I+++NGV L N +H +A    K+
Sbjct: 349 ELRKGDQILSVNGVDLRNASHEQAAIALKN 378

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 67.2 bits (163), Expect = 1e-12
 Identities = 26/130 (20%), Positives = 40/130 (30%), Gaps = 3/130 (2%)

Query: 10  VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
           V+   S  LG  I    GG       IS I  GG     G    GD+++ VN   L+  +
Sbjct: 312 VIHRGSTGLGFNIV---GGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 368

Query: 70  IQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKS 129
            ++A  AL N    V I+    P++        +                  + N     
Sbjct: 369 HEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSSLGSGTASLRSNPKRGF 428

Query: 130 LMPERQVSMP 139
            +        
Sbjct: 429 YIRALFDYDK 438

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score =  104 bits (261), Expect = 4e-28
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 213 RPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREG 272
           +  +    +      K P    LGFS+VG R   +G LGIFV+ I +   A  + +L+E 
Sbjct: 13  KNMAQGRHVEVFELLKPPS-GGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKET 71

Query: 273 DEIIAINGVPL-ENKTHAEAIAMFK 296
           D+I+AING  L +  TH +AI++ +
Sbjct: 72  DQILAINGQALDQTITHQQAISILQ 96

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 2/94 (2%)

Query: 2   EKQFKVFRVVKDDSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
            +  +VF ++K  S  LG  +   +          +  I+ G   HRDGR    D+++ +
Sbjct: 18  GRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAI 77

Query: 61  NDKRL-KGLTIQEAREALNNKDSHVEIVICRNPD 93
           N + L + +T Q+A   L      V++VI R   
Sbjct: 78  NGQALDQTITHQQAISILQKAKDTVQLVIARGSL 111

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score =  104 bits (260), Expect = 5e-28
 Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 2/100 (2%)

Query: 198 SNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTI 257
           S  +   N    +V +  +    +  +  ++      LGFS+V  R    G + IFVK +
Sbjct: 3   SGSSGLGNEDFNSVIQQMAQGRQIEYIDIERPST-GGLGFSVVALRSQNLGKVDIFVKDV 61

Query: 258 FQSGQAAENEKLREGDEIIAINGVPL-ENKTHAEAIAMFK 296
                A  +++L+E D+I+AIN  PL +N +H +AIA+ +
Sbjct: 62  QPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQ 101

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 67.5 bits (165), Expect = 3e-14
 Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 3   KQFKVFRVVKDDSNELGIYI-ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
           +Q +   + +  +  LG  +   +          +  ++PG    RD R    D+++ +N
Sbjct: 24  RQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAIN 83

Query: 62  DKRL-KGLTIQEAREALNNKDSHVEIVICRNPDDAKSAT 99
              L + ++ Q+A   L      + +++ R P   KS+T
Sbjct: 84  HTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKSST 122

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score =  102 bits (257), Expect = 1e-27
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 7/104 (6%)

Query: 195 HNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGI 252
           H+  + ++  +     +      S+++  +   KGP  K LGFSI GG  +    G+  I
Sbjct: 2   HHHHHHSSGVDLGTENLYFQ---SMTVVEIKLFKGP--KGLGFSIAGGVGNQHIPGDNSI 56

Query: 253 FVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
           +V  I   G A ++ +L+ GD ++ +N   LE  TH EA+A+ K
Sbjct: 57  YVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILK 100

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 61.6 bits (150), Expect = 3e-12
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 3   KQFKVFRVV-KDDSNELGIYI---ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELI 58
           +   V  +        LG  I            +   ++ I  GGA  +DGR  VGD L+
Sbjct: 21  QSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLL 80

Query: 59  KVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
            VN+  L+ +T +EA   L N    V + + +
Sbjct: 81  MVNNYSLEEVTHEEAVAILKNTSEVVYLKVGK 112

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score =  102 bits (255), Expect = 2e-27
 Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
           + TVT +K  G   +G SIV  + + +  LGI+VK++ + G A  + +L  GD++++++G
Sbjct: 12  IITVTLKKQNG---MGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 68

Query: 281 VPLENKTHAEAIAMFK 296
             L   +   A  +  
Sbjct: 69  RSLVGLSQERAAELMT 84

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 70.4 bits (173), Expect = 1e-15
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 2  EKQFKVFRVVKDDSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
           K+ ++  V     N +G+ I   +  G       +  +  GGA   DGR   GD+L+ V
Sbjct: 7  HKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSV 66

Query: 61 NDKRLKGLTIQEAREALNNKDSHVEIVICR 90
          + + L GL+ + A E +    S V + + +
Sbjct: 67 DGRSLVGLSQERAAELMTRTSSVVTLEVAK 96

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score =  102 bits (256), Expect = 2e-27
 Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 4/92 (4%)

Query: 207 SNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQAA 264
            ++ +       ++   +   +GP    LGF+IVGG D      + GI+V  I ++G AA
Sbjct: 4   GSSGMNGRVDYLVTEEEINLTRGPS--GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAA 61

Query: 265 ENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
            + +L+EGD+I+++NG  L+N  H +A+ +F+
Sbjct: 62  LDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR 93

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 14  DSNELGIYI---ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
             + LG  I     Q   ++ S   +S I+  GA   DGR   GD+++ VN + LK L  
Sbjct: 26  GPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLH 85

Query: 71  QEAREALNNKDSHVEIVICRNPDDAKS 97
           Q+A +   N    V + +         
Sbjct: 86  QDAVDLFRNAGYAVSLRVQHRLQVQNG 112

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score =  102 bits (255), Expect = 2e-27
 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGN--LGIFVKTIFQSGQAAENEKLREGDEI 275
             S+++V   +     SLG SI G RD        GI+VK++     AA + ++   D+I
Sbjct: 10  GFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKI 69

Query: 276 IAINGVPLENKTHAEAIAMFK 296
           + ++ V ++    ++ + + +
Sbjct: 70  LRVDDVNVQGMAQSDVVEVLR 90

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 63.5 bits (155), Expect = 5e-13
 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 10  VVKDDSNELGIYI----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
             + D++ LGI I    ++   G     Y +  + PG A   DGR    D++++V+D  +
Sbjct: 19  FREKDTSSLGISISGMRDQSTTGEATGIY-VKSLIPGSAAALDGRIEPNDKILRVDDVNV 77

Query: 66  KGLTIQEAREALNNKDSHVEIVICR 90
           +G+   +  E L N  + V +++ R
Sbjct: 78  QGMAQSDVVEVLRNAGNPVRLLLIR 102

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score =  102 bits (256), Expect = 2e-27
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 2/100 (2%)

Query: 198 SNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKG-NLGIFVKT 256
           S  +      +      +S       +      G   LG S+ G +    G +LGIF+K+
Sbjct: 3   SGSSGLKGEPDCYALSLESSEQLTLEIPLND-SGSAGLGVSLKGNKSRETGTDLGIFIKS 61

Query: 257 IFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
           I   G A ++ +LR  D++IA+NG  L  K++ EA+   +
Sbjct: 62  IIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLR 101

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 61.0 bits (148), Expect = 7e-12
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 15/96 (15%)

Query: 10  VVKDDSNELGIYIERQDGGAHFS-----PYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
           +    S  LG+ ++   G             I  I  GGA  +DGR  + D+LI VN + 
Sbjct: 31  LNDSGSAGLGVSLK---GNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGET 87

Query: 65  LKGLTIQEAREAL-------NNKDSHVEIVICRNPD 93
           L G +  EA E L        N    +++VI R   
Sbjct: 88  LLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG 123

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score =  101 bits (254), Expect = 2e-27
 Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 4/77 (5%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
             +   +GP    LGF+IVGG D      + GI+V  I ++G AA + +L+EGD+I+++N
Sbjct: 9   EEINLTRGPS--GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVN 66

Query: 280 GVPLENKTHAEAIAMFK 296
           G  L+N  H +A+ +F+
Sbjct: 67  GQDLKNLLHQDAVDLFR 83

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 60.4 bits (147), Expect = 5e-12
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 14 DSNELGIYI---ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
            + LG  I     Q   ++ S   +S I+  GA   DGR   GD+++ VN + LK L  
Sbjct: 16 GPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLH 75

Query: 71 QEAREALNNKDSHVEIVICRNPD 93
          Q+A +   N    V + +    +
Sbjct: 76 QDAVDLFRNAGYAVSLRVQHRLE 98

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score =  101 bits (253), Expect = 4e-27
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
           F+V   +G      G ++ GGRD   G+  + V+ + + G A    +L  GD ++ ING 
Sbjct: 13  FSVELVRGYA--GFGLTLGGGRDVA-GDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGE 69

Query: 282 PLENKTHAEAIAMFK 296
             +  THA+A+   +
Sbjct: 70  STQGLTHAQAVERIR 84

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 63.8 bits (156), Expect = 3e-13
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 14  DSNELGIYIERQDGGAHFS---PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
                G+ +    GG   +   P  +  +   G   R GR  VGD ++ +N +  +GLT 
Sbjct: 20  GYAGFGLTLG---GGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTH 76

Query: 71  QEAREALNNKDSHVEIVICRNPDDAKSA 98
            +A E +      + +VI R      S 
Sbjct: 77  AQAVERIRAGGPQLHLVIRRPLSGPSSG 104

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score =  101 bits (254), Expect = 4e-27
 Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 202 ATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSG 261
            +  +S    +    L  +  + T +K       GF+I+GG +    +  + VK++   G
Sbjct: 1   GSSGSSGLFTRDASQLKGTFLSTTLKKSN--MGFGFTIIGGDEP---DEFLQVKSVIPDG 55

Query: 262 QAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
            AA++ K+  GD I+ IN V +   THA+ + +F+ +
Sbjct: 56  PAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSV 92

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 60.5 bits (147), Expect = 7e-12
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 14  DSNELGIYIERQDGGAHFSPYL-ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQE 72
            +   G  I    GG     +L +  + P G   +DG+   GD ++ +N+  + G T  +
Sbjct: 28  SNMGFGFTII---GGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHAD 84

Query: 73  AREALNN--KDSHVEIVICRNPDDAKSATNCDNLQPNP 108
             +   +      V +V+CR         +  N  P+ 
Sbjct: 85  VVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPANSGPSS 122

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score =  100 bits (252), Expect = 5e-27
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
           +  +   KGP  K LGFSI GG  +    G+  I+V  I + G A ++ KL+ GD+++A+
Sbjct: 4   IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61

Query: 279 NGVPLENKTHAEAIAMFKD 297
           N V LE  TH EA+   K+
Sbjct: 62  NSVSLEEVTHEEAVTALKN 80

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 63.5 bits (155), Expect = 4e-13
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 1  MEKQFKVFRVVKDDSNELGIYIERQDGGAHF---SPYLISHIEPGGAIHRDGRFHVGDEL 57
          MEK  ++   +      LG  I    G  H    +   ++ I  GGA H+DG+  +GD+L
Sbjct: 1  MEKIMEI--KLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKL 58

Query: 58 IKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD 93
          + VN   L+ +T +EA  AL N    V + + +   
Sbjct: 59 LAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTS 94

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score =  100 bits (251), Expect = 6e-27
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
               +  ++G     LGFSI GG D+P    + GIF+  I   G AA + +L   D ++ 
Sbjct: 4   KYEEIVLERGNS--GLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLR 61

Query: 278 INGVPLENKTHAEAIAMFK 296
           +N V +    H+ A+   K
Sbjct: 62  VNEVDVSEVVHSRAVEALK 80

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 9/90 (10%)

Query: 10 VVKDDSNELGIYIERQDGGAHFS------PYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
          V++  ++ LG  I    GG             I+ I PGGA   DGR  V D +++VN+ 
Sbjct: 9  VLERGNSGLGFSIA---GGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEV 65

Query: 64 RLKGLTIQEAREALNNKDSHVEIVICRNPD 93
           +  +    A EAL      V +V+ R   
Sbjct: 66 DVSEVVHSRAVEALKEAGPVVRLVVRRRQP 95

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score =  100 bits (250), Expect = 1e-26
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGN------LGIFVKTIFQSGQAAENEKLREGD 273
            +  +  QK PG + LG SI GG     GN       GIF+  +  +G A  + +LR G 
Sbjct: 9   GLRELCIQKAPG-ERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGL 67

Query: 274 EIIAINGVPLENKTHAEAIAMFK 296
            ++ +N   L   TH EA+ + +
Sbjct: 68  RLLEVNQQSLLGLTHGEAVQLLR 90

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 67.0 bits (164), Expect = 2e-14
 Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 4   QFKVFRVVKDDSNELGIYI-------ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDE 56
             +   + K     LGI I                    IS + P GA  RDGR  VG  
Sbjct: 9   GLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLR 68

Query: 57  LIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSA 98
           L++VN + L GLT  EA + L +    + +++C   +   S+
Sbjct: 69  LLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFESGPSS 110

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 99.0 bits (247), Expect = 2e-26
 Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
            +++ TVT         LG SIVG  +   G+ GI++ +I + G  A + ++  GD ++ 
Sbjct: 3   HMNIITVTLNMEKY-NFLGISIVGQSNER-GDGGIYIGSIMKGGAVAADGRIEPGDMLLQ 60

Query: 278 INGVPLENKTHAEAIAMFKDIFPQSSK 304
           +N +  EN ++ +A+ + +DI  +   
Sbjct: 61  VNDMNFENMSNDDAVRVLRDIVHKPGP 87

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 65.5 bits (160), Expect = 9e-14
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 3/98 (3%)

Query: 9   RVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
            +  +  N LGI I  Q          I  I  GGA+  DGR   GD L++VND   + +
Sbjct: 10  TLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENM 69

Query: 69  TIQEAREALNN---KDSHVEIVICRNPDDAKSATNCDN 103
           +  +A   L +   K   + + + ++   + +    D 
Sbjct: 70  SNDDAVRVLRDIVHKPGPIVLTVAKSGGGSGNEVWIDG 107

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 99.1 bits (247), Expect = 4e-26
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 212 KRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLRE 271
           +R   L   +  +  +K      LG S+ G +D  +  + IFV  I   G AA + ++R 
Sbjct: 17  QRYADLPGELHIIELEKDKN--GLGLSLAGNKDRSR--MSIFVVGINPEGPAAADGRMRI 72

Query: 272 GDEIIAINGVPLENKTHAEAIAMFK 296
           GDE++ IN   L  ++H  A A+ K
Sbjct: 73  GDELLEINNQILYGRSHQNASAIIK 97

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 66.7 bits (163), Expect = 5e-14
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 10  VVKDDSNELGIYIERQDGGAHFS--PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
            ++ D N LG+ +    G    S     +  I P G    DGR  +GDEL+++N++ L G
Sbjct: 30  ELEKDKNGLGLSLA---GNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYG 86

Query: 68  LTIQEAREALNNKDSHVEIVICRNPD 93
            + Q A   +    S V++V  RN D
Sbjct: 87  RSHQNASAIIKTAPSKVKLVFIRNED 112

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 98.6 bits (246), Expect = 4e-26
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 207 SNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSP-KGNLGIFVKTIFQSGQAAE 265
           S+ +       S  +  V   K    K LGFSI+  +D        I ++++   G A  
Sbjct: 2   SSGSSGELALWSPEVKIVELVKDC--KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAER 59

Query: 266 NEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
           +  L  GD ++++N   L+N + AEA+ + K +
Sbjct: 60  SGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAV 92

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 62.8 bits (153), Expect = 7e-13
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 36  ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL-NNKDSHVEIVICRNP 92
           I  +   G   R G    GD L+ VN+  L   ++ EA E L       V + IC  P
Sbjct: 48  IRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 99.1 bits (247), Expect = 5e-26
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 3/114 (2%)

Query: 183 GISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGG 242
           G S     S    ++  V   P+     +     L+  +   +  +  G   LG  +VGG
Sbjct: 1   GSSGSSGHS--HSDKHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSG-AMLGLKVVGG 57

Query: 243 RDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
           + +  G L  F+  + +   A     LR GDE++  NG  L+  T  E   +  
Sbjct: 58  KMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIIL 111

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 67.1 bits (164), Expect = 3e-14
 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 1   MEKQFKVFRVVKDDSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
           + K+ K   V +D    LG+ +   +   +      I+ ++ G      G    GDE+++
Sbjct: 33  LNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLE 92

Query: 60  VNDKRLKGLTIQEAREALNN--KDSHVEIVICRNP 92
            N + L+G T +E    +     +  VE+V+ R+ 
Sbjct: 93  WNGRLLQGATFEEVYNIILESKPEPQVELVVSRSG 127

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 97.0 bits (242), Expect = 9e-26
 Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 5/82 (6%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
                +K    +  GF++VGG +    +  + +K++   G AA + K+  GD I+++N  
Sbjct: 2   IHTKLRKSS--RGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDT 56

Query: 282 PLENKTHAEAIAMFKDIFPQSS 303
            +   THA+ + +F+ I   +S
Sbjct: 57  CVLGHTHAQVVKIFQSIPIGAS 78

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 60.7 bits (148), Expect = 2e-12
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 14 DSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA 73
           S   G  +    G        I  +   G    DG+   GD ++ VND  + G T  + 
Sbjct: 9  SSRGFGFTV--VGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQV 66

Query: 74 REALNN--KDSHVEIVICR 90
           +   +    + V++ +CR
Sbjct: 67 VKIFQSIPIGASVDLELCR 85

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 97.5 bits (243), Expect = 1e-25
 Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDS-----PKGNLGIFVKTIFQSGQAAENEKLREGDEII 276
            T+   +  G  SLGF+I+GGR S        + GIFV  I  SG AA+   L+  D II
Sbjct: 10  LTLVLHRDSG--SLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRII 67

Query: 277 AINGVPLENKTHAEAIAMFK 296
            +NG  L   TH +A+  FK
Sbjct: 68  EVNGRDLSRATHDQAVEAFK 87

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 6/95 (6%)

Query: 10  VVKDDSNELGIYI------ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
           V+  DS  LG  I           G+      +S I   G   ++G   + D +I+VN +
Sbjct: 13  VLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGR 72

Query: 64  RLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSA 98
            L   T  +A EA       + + + R      S 
Sbjct: 73  DLSRATHDQAVEAFKTAKEPIVVQVLRRTSGPSSG 107

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 98.3 bits (245), Expect = 1e-25
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 212 KRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLRE 271
           + P  L         +K    +  GF++VGG +    +  + +K++   G AA + K+  
Sbjct: 10  RNPSELKGKFIHTKLRKSS--RGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMET 64

Query: 272 GDEIIAINGVPLENKTHAEAIAMFKDI 298
           GD I+++N   +   THA+ + +F+ I
Sbjct: 65  GDVIVSVNDTCVLGHTHAQVVKIFQSI 91

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 58.7 bits (142), Expect = 4e-11
 Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 11/82 (13%)

Query: 20  IYIERQDGGAHFS---------PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
             + +   G  F+            I  +   G    DG+   GD ++ VND  + G T 
Sbjct: 22  TKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH 81

Query: 71  QEAREALNN--KDSHVEIVICR 90
            +  +   +    + V++ +CR
Sbjct: 82  AQVVKIFQSIPIGASVDLELCR 103

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 97.4 bits (243), Expect = 1e-25
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 216 SLSLSMFTVTFQKGPGQKSLGFSIVG---GRDSPKGNLGIFVKTIFQSGQAAENEKLREG 272
           S  L +F V  +K      LG SI+G   G D+    LGIFVKT+ + G A  + +++  
Sbjct: 5   SSGLELFPVELEKDE--DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVN 62

Query: 273 DEIIAINGVPLENKTHAEAIAMFKD 297
           D+I+ ++G+ L   T   A  + ++
Sbjct: 63  DQIVEVDGISLVGVTQNFAATVLRN 87

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 65.8 bits (161), Expect = 6e-14
 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 5   FKVFRVV-KDDSNELGIYIERQDGGAHFSPYL----ISHIEPGGAIHRDGRFHVGDELIK 59
            ++F V  + D + LGI I     GA          +  +  GGA  RDGR  V D++++
Sbjct: 8   LELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVE 67

Query: 60  VNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKS 97
           V+   L G+T   A   L N   +V  VI R      S
Sbjct: 68  VDGISLVGVTQNFAATVLRNTKGNVRFVIGREKPSGPS 105

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 95.9 bits (239), Expect = 3e-25
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
           FTV  +KG      GFSI GGR+     + ++V  + + G A  N ++R GD+II ING 
Sbjct: 13  FTVDMEKGAK--GFGFSIRGGREYK---MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGE 67

Query: 282 PLENKTHAEAIAMFK 296
              + THA AI + K
Sbjct: 68  STRDMTHARAIELIK 82

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 65.4 bits (160), Expect = 8e-14
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 14  DSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQE 72
            +   G  I    GG  +     +  +   G   R+GR  VGD++I++N +  + +T   
Sbjct: 20  GAKGFGFSIR---GGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHAR 76

Query: 73  AREALNNKDSHVEIVICRNPDDAKS 97
           A E + +    V +++ R      S
Sbjct: 77  AIELIKSGGRRVRLLLKRGTGSGPS 101

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 95.9 bits (239), Expect = 4e-25
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
                 +      LGFSI GG+ S     G+ GIFV  I + G A     L+ GD +++I
Sbjct: 9   HVACLARSER--GLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI 66

Query: 279 NGVPLENKTHAEAIAMFK 296
           NGV +    H  A+++  
Sbjct: 67  NGVDVTEARHDHAVSLLT 84

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 63.1 bits (154), Expect = 5e-13
 Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 10  VVKDDSNELGIYIERQDGGAHFSPY----LISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
            +      LG  I    G   +        +S I  GGA HR G   VGD ++ +N   +
Sbjct: 12  CLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDV 71

Query: 66  KGLTIQEAREALNNKDSHVEIVICRNPDDAKS 97
                  A   L      + +++ R      S
Sbjct: 72  TEARHDHAVSLLTAASPTIALLLEREAGSGPS 103

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 95.4 bits (238), Expect = 5e-25
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
            T+   KG     LG SIVGG D+  G   I +  +++ G A ++ +L  GD+I+ +NG+
Sbjct: 6   TTIEISKGRT--GLGLSIVGGSDTLLG--AIIIHEVYEEGAACKDGRLWAGDQILEVNGI 61

Query: 282 PLENKTHAEAIAMFK 296
            L   TH EAI + +
Sbjct: 62  DLRKATHDEAINVLR 76

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 68.9 bits (169), Expect = 4e-15
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 10 VVKDDSNELGIYIERQDGGAHFS--PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
           +      LG+ I    GG+       +I  +   GA  +DGR   GD++++VN   L+ 
Sbjct: 9  EISKGRTGLGLSIV---GGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRK 65

Query: 68 LTIQEAREALNNKDSHVEIVICRNPDDAKS 97
           T  EA   L      V + + R+    KS
Sbjct: 66 ATHDEAINVLRQTPQRVRLTLYRDEAPYKS 95

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 95.0 bits (237), Expect = 7e-25
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 3/76 (3%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPK-GNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
           F V   K    + LG +I G     K    GIFVK+I +S     + +++ GD+IIA++G
Sbjct: 6   FDVELTKNV--QGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDG 63

Query: 281 VPLENKTHAEAIAMFK 296
             L+  T+ +A+ + +
Sbjct: 64  TNLQGFTNQQAVEVLR 79

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 66.1 bits (162), Expect = 4e-14
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 1  MEKQFKVFRVVKDDSNELGIYIE--RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELI 58
          M + F V   +  +   LGI I     D     S   +  I    A+  DGR  +GD++I
Sbjct: 2  MSETFDV--ELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQII 59

Query: 59 KVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD 93
           V+   L+G T Q+A E L +    V + + R  +
Sbjct: 60 AVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 94

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 94.6 bits (236), Expect = 7e-25
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
            T+  QK PG K LG SIVG R+      G+FV  I + G A  + +L +GD+I+ +NG 
Sbjct: 6   LTIGLQKKPG-KGLGLSIVGKRNDT----GVFVSDIVKGGIADADGRLMQGDQILMVNGE 60

Query: 282 PLENKTHAEAIAMFKD 297
            + N T     A+ K 
Sbjct: 61  DVRNATQEAVAALLKC 76

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 71.5 bits (176), Expect = 4e-16
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 4/90 (4%)

Query: 1  MEKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
          M     +  + K     LG+ I    G  + +   +S I  GG    DGR   GD+++ V
Sbjct: 2  MSDTLTI-GLQKKPGKGLGLSIV---GKRNDTGVFVSDIVKGGIADADGRLMQGDQILMV 57

Query: 61 NDKRLKGLTIQEAREALNNKDSHVEIVICR 90
          N + ++  T +     L      V + + R
Sbjct: 58 NGEDVRNATQEAVAALLKCSLGTVTLEVGR 87

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 97.3 bits (242), Expect = 8e-25
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 6/126 (4%)

Query: 175 RKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSL-SLSMFTVTFQKGPGQK 233
           RK       I      S  D++R N    P  ++A  +  K +  L +F V  +K    +
Sbjct: 34  RKIHFSTAPIQVFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDS--E 91

Query: 234 SLGFSIVGGR---DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
            LG SI+G     D     LGIFVKT+ + G A  + +++  D ++ ++G  L   T + 
Sbjct: 92  GLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSF 151

Query: 291 AIAMFK 296
           A ++ +
Sbjct: 152 AASVLR 157

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 64.2 bits (156), Expect = 1e-12
 Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 14  DSNELGIYIERQDGGAHFSPYL----ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
           DS  LGI I     GA          +  +  GGA HRDGR  V D L++V+   L G+T
Sbjct: 89  DSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVT 148

Query: 70  IQEAREALNNKDSHVEIVICR 90
              A   L N    V  +I R
Sbjct: 149 QSFAASVLRNTKGRVRFMIGR 169

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 95.2 bits (237), Expect = 1e-24
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 2/98 (2%)

Query: 207 SNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAEN 266
           S           ++   V   +   + SL  ++ GG DSP G   + V  +++ G A  +
Sbjct: 2   SEGAATMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVG--KVVVSAVYEGGAAERH 59

Query: 267 EKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSK 304
             + +GDEI+AING  + + T AEA A  +  + Q   
Sbjct: 60  GGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGD 97

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 69.8 bits (171), Expect = 3e-15
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 10  VVKDDSNELGIYIERQDGGA--HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
           +       L + +E   GG        ++S +  GGA  R G    GDE++ +N K +  
Sbjct: 22  LRIKKEGSLDLALE---GGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTD 78

Query: 68  LTIQEA----REALNNKDSHVEIVICRNP 92
            T+ EA    ++A N     +++V+   P
Sbjct: 79  YTLAEAEAALQKAWNQGGDWIDLVVAVCP 107

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 94.7 bits (236), Expect = 1e-24
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
             VT  K    KS G  IV G           GIF+K I     A    +L+ GD I+++
Sbjct: 7   HMVTLDKTGK-KSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 65

Query: 279 NGVPLENKTHAEAIAMFKD 297
           NG  + N T    I + K+
Sbjct: 66  NGKDVRNSTEQAVIDLIKE 84

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 63.1 bits (154), Expect = 5e-13
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 7  VFRVV--KDDSNELGIYI----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
          +  V   K      GI I     +       +   I  I P    H  GR  VGD ++ +
Sbjct: 6  IHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 65

Query: 61 NDKRLKGLTIQEAREALNNKDSHVEIVICR 90
          N K ++  T Q   + +   D  +E+ I  
Sbjct: 66 NGKDVRNSTEQAVIDLIKEADFKIELEIQT 95

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 95.1 bits (237), Expect = 1e-24
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 205 NNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAA 264
           +  +   +     S+  +TV  ++G      GFS+ GGR+    N+ ++V  + + G A 
Sbjct: 9   SGVDLGTENLYFQSMDFYTVELERGAK--GFGFSLRGGREY---NMDLYVLRLAEDGPAE 63

Query: 265 ENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
            + K+R GDEI+ ING   +N  H+ AI + K
Sbjct: 64  RSGKMRIGDEILEINGETTKNMKHSRAIELIK 95

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 65.1 bits (159), Expect = 1e-13
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 14  DSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQE 72
            +   G  +    GG  ++    +  +   G   R G+  +GDE++++N +  K +    
Sbjct: 33  GAKGFGFSLR---GGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSR 89

Query: 73  AREALNNKDSHVEIVICRNPD 93
           A E + N    V + + R   
Sbjct: 90  AIELIKNGGRRVRLFLKRGET 110

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 95.2 bits (237), Expect = 1e-24
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 228 KGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
                  LG  IVGG++ P   G +G ++  I   G A +  KL EG +++  NG+PL +
Sbjct: 25  HTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTS 84

Query: 286 KTHAEAIAMFK 296
           KT+ E  ++  
Sbjct: 85  KTYEEVQSIIS 95

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 65.6 bits (160), Expect = 9e-14
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 9   RVVKDDSNELGIYI---ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
           +      N LGI I   +   G +      I+ I PGG+  + G+   G ++++ N   L
Sbjct: 23  KDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPL 82

Query: 66  KGLTIQEAREALNNKDSHVEIVICRNPD 93
              T +E +  ++ +    EI +  + +
Sbjct: 83  TSKTYEEVQSIISQQSGEAEICVRLDLN 110

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 94.3 bits (235), Expect = 1e-24
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
             +   +       GF I+GG +       I++  I   G A  + +LR GDE+I+++G 
Sbjct: 4   QDIFLWRKET--GFGFRILGGNEP---GEPIYIGHIVPLGAADTDGRLRSGDELISVDGT 58

Query: 282 PLENKTHAEAIAMFKDI 298
           P+  K+H   + + +  
Sbjct: 59  PVIGKSHQLVVQLMQQA 75

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 62.7 bits (153), Expect = 6e-13
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 11/89 (12%)

Query: 15 SNELGIYIERQDGGAHFS---------PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
          S E  I++ R++ G  F          P  I HI P GA   DGR   GDELI V+   +
Sbjct: 1  SMEQDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPV 60

Query: 66 KGLTIQEAREALNN--KDSHVEIVICRNP 92
           G + Q   + +    K  HV + + +  
Sbjct: 61 IGKSHQLVVQLMQQAAKQGHVNLTVRQTR 89

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 95.2 bits (237), Expect = 1e-24
 Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 3/93 (3%)

Query: 207 SNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAA 264
           S+ +     S     + V   +  G +SLG  IVG   +       GI+VK++     A 
Sbjct: 2   SSGSSGGSDSSLFETYNVELVRKDG-QSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAY 60

Query: 265 ENEKLREGDEIIAINGVPLENKTHAEAIAMFKD 297
            N  ++  D+I+A++GV ++   + + + + ++
Sbjct: 61  HNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN 93

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 61.7 bits (150), Expect = 3e-12
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 10  VVKDDSNELGIYI----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
           +V+ D   LGI I         G     Y +  + PG A + +G   V D+++ V+   +
Sbjct: 21  LVRKDGQSLGIRIVGYVGTSHTGEASGIY-VKSVIPGSAAYHNGHIQVNDKIVAVDGVNI 79

Query: 66  KGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLP 112
           +G    +  E L N    V + + R    + ++           + P
Sbjct: 80  QGFANHDVVEVLRNAGQVVHLTLVRRKTSSSTSPLEPPSDRGTVSGP 126

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 94.2 bits (235), Expect = 1e-24
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKG-NLGIFVKTIFQSGQAAENEKLREGDEII 276
           S+    VT  K     + GF I GG    +  +  + + ++   G A     ++ GD ++
Sbjct: 1   SMRTVEVTLHKEGN--TFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLL 58

Query: 277 AINGVPLENKTHAEAIAMFKD 297
           +++G+ L   THAEA+++ K 
Sbjct: 59  SVDGIRLLGTTHAEAMSILKQ 79

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 67.2 bits (165), Expect = 2e-14
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 6  KVFRVV-KDDSNELGIYIE--RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVND 62
          +   V    + N  G  I     D      P +I+ + PGG   R+G    GD L+ V+ 
Sbjct: 3  RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDG 62

Query: 63 KRLKGLTIQEAREALNNKDSHVEIVICRNP 92
           RL G T  EA   L        ++I  + 
Sbjct: 63 IRLLGTTHAEAMSILKQCGQEAALLIEYDV 92

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 93.9 bits (234), Expect = 2e-24
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
           S+ +  V   K    + LG  +V   D P    G+F+  + + G AA++ +L   D ++A
Sbjct: 1   SMEILQVALHKRDSGEQLGIKLVRRTDEP----GVFILDLLEGGLAAQDGRLSSNDRVLA 56

Query: 278 INGVPLENKTHAEAIAMFK 296
           ING  L+  T   A  + +
Sbjct: 57  INGHDLKYGTPELAAQIIQ 75

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 67.3 bits (165), Expect = 1e-14
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 7  VFRVV--KDDSNE-LGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
          + +V   K DS E LGI +             I  +  GG   +DGR    D ++ +N  
Sbjct: 4  ILQVALHKRDSGEQLGIKLV---RRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGH 60

Query: 64 RLKGLTIQEAREALNNKDSHVEIVICRNPD 93
           LK  T + A + +      V + I R   
Sbjct: 61 DLKYGTPELAAQIIQASGERVNLTIARPGK 90

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 94.8 bits (236), Expect = 2e-24
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 216 SLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEI 275
            +      VT QK      +G SI GG         +++  +F +  AA +  +  GDEI
Sbjct: 15  GIPTVPGKVTLQKDAQ-NLIGISIGGGAQY---CPCLYIVQVFDNTPAALDGTVAAGDEI 70

Query: 276 IAINGVPLENKTHAEAIAMFKDI 298
             +NG  ++ KT  E   M +++
Sbjct: 71  TGVNGRSIKGKTKVEVAKMIQEV 93

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 67.5 bits (165), Expect = 3e-14
 Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 4/97 (4%)

Query: 1   MEKQFKVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
           +        + KD  N +GI I    GGA +     I  +        DG    GDE+  
Sbjct: 16  IPTVPGKVTLQKDAQNLIGISIG---GGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITG 72

Query: 60  VNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAK 96
           VN + +KG T  E  + +      V I   +   D K
Sbjct: 73  VNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPK 109

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 93.9 bits (234), Expect = 2e-24
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
              V  ++       GF I+GG +       I +  +   G A  + +L  GDE++ ++G
Sbjct: 10  ELDVHLRRMES--GFGFRILGGDEP---GQPILIGAVIAMGSADRDGRLHPGDELVYVDG 64

Query: 281 VPLENKTHAEAIAMFK 296
           +P+  KTH   I +  
Sbjct: 65  IPVAGKTHRYVIDLMH 80

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 64.6 bits (158), Expect = 1e-13
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 11/97 (11%)

Query: 13  DDSNELGIYIERQDGGAHFS---------PYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
               EL +++ R + G  F          P LI  +   G+  RDGR H GDEL+ V+  
Sbjct: 6   SGYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGI 65

Query: 64  RLKGLTIQEAREALNN--KDSHVEIVICRNPDDAKSA 98
            + G T +   + +++  ++  V + + R      S+
Sbjct: 66  PVAGKTHRYVIDLMHHAARNGQVNLTVRRKVLSGPSS 102

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 94.0 bits (234), Expect = 2e-24
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%)

Query: 221 MFTVTFQKGPGQKSLGFSIV-----GGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEI 275
           +F V   K     SLG S+      GG ++   + GI+VK +   G A  + ++ +GD +
Sbjct: 10  IFEVELAKNDN--SLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRV 67

Query: 276 IAINGVPLENKTHAEAIAMFK 296
           +A+NGV LE  TH +A+   +
Sbjct: 68  LAVNGVSLEGATHKQAVETLR 88

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 64.3 bits (157), Expect = 2e-13
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 14  DSNELGIYI--ERQDGGAHFS----PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
           + N LGI +      GG + S       +  + P GA   DGR H GD ++ VN   L+G
Sbjct: 18  NDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 77

Query: 68  LTIQEAREALNNKDSHVEIVICRNPD 93
            T ++A E L N    V +++ +   
Sbjct: 78  ATHKQAVETLRNTGQVVHLLLEKGQS 103

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 94.1 bits (234), Expect = 3e-24
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 7/95 (7%)

Query: 202 ATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSG 261
            +  +S AT+K+   +          K  G   LGFS+ GG D       I V  +F +G
Sbjct: 1   GSSGSSGATLKQLDGI----HVTILHKEEG-AGLGFSLAGGADLENK--VITVHRVFPNG 53

Query: 262 QAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
            A++   +++G+E+++ING  L+  TH +A+A+ +
Sbjct: 54  LASQEGTIQKGNEVLSINGKSLKGTTHHDALAILR 88

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 66.7 bits (163), Expect = 4e-14
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 10  VVKDDSNELGIYIERQDGGAHF--SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
           + K++   LG  +    GGA        +  + P G   ++G    G+E++ +N K LKG
Sbjct: 21  LHKEEGAGLGFSLA---GGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKG 77

Query: 68  LTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQP 106
            T  +A   L       + VI       ++  + ++  P
Sbjct: 78  TTHHDALAILRQAREPRQAVIVTRKLTPEAMPDLNSSGP 116

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 93.6 bits (233), Expect = 3e-24
 Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            V+ ++    + LGFSI GG +     +GI+V  +   G  AE E LR GD+I+ +N   
Sbjct: 11  LVSLRRAKAHEGLGFSIRGGSEH---GVGIYVSLVE-PGSLAEKEGLRVGDQILRVNDKS 66

Query: 283 LENKTHAEAIAMFK 296
           L   THAEA+   K
Sbjct: 67  LARVTHAEAVKALK 80

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 6/98 (6%)

Query: 2  EKQFKVFRVVKDDSNE-LGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
            + ++  + +  ++E LG  I    GG+ H     +S +EPG    ++G   VGD++++
Sbjct: 6  SGEVRLVSLRRAKAHEGLGFSIR---GGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILR 61

Query: 60 VNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKS 97
          VNDK L  +T  EA +AL      V  V         S
Sbjct: 62 VNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRISGPS 99

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 94.1 bits (234), Expect = 3e-24
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
           S+    VT QK      +G SI GG         +++  +F +  AA +  +  GDEI  
Sbjct: 22  SMVPGKVTLQKDAQ-NLIGISIGGGAQY---CPCLYIVQVFDNTPAALDGTVAAGDEITG 77

Query: 278 INGVPLENKTHAEAIAMFK 296
           +NG  ++ KT  E   M +
Sbjct: 78  VNGRSIKGKTKVEVAKMIQ 96

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 66.3 bits (162), Expect = 5e-14
 Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 1   MEKQFKVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
                    + KD  N +GI I    GGA +     I  +        DG    GDE+  
Sbjct: 21  QSMVPGKVTLQKDAQNLIGISIG---GGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITG 77

Query: 60  VNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
           VN + +KG T  E  + +      V I   +
Sbjct: 78  VNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 108

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 94.1 bits (234), Expect = 3e-24
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 7/82 (8%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDS------PKGNLGIFVKTIFQSGQAAENEKLREGDEI 275
             V   + P  KSLG SIVGGR         +   GIF+K + +   A +N  L+ GD I
Sbjct: 26  RRVELWREPS-KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 84

Query: 276 IAINGVPLENKTHAEAIAMFKD 297
           + ++G+ L + +H +A+   + 
Sbjct: 85  VEVDGMDLRDASHEQAVEAIRK 106

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 63.6 bits (155), Expect = 6e-13
 Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 7/96 (7%)

Query: 2   EKQFKVFRVVKDDSNELGIYI-------ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVG 54
             Q +   + ++ S  LGI I        R   G       I H+       ++G    G
Sbjct: 22  SMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPG 81

Query: 55  DELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
           D +++V+   L+  + ++A EA+    + V  ++  
Sbjct: 82  DRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 117

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 93.6 bits (233), Expect = 3e-24
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 221 MFTVTFQKGPGQKSLGFSIVGGR---DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
           +F V  +K    + LG SI+G     D     LGIFVKT+ + G A  + +++  D ++ 
Sbjct: 5   LFPVELEKDS--EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVE 62

Query: 278 INGVPLENKTHAEAIAMFK 296
           ++G  L   T + A ++ +
Sbjct: 63  VDGTSLVGVTQSFAASVLR 81

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 67.8 bits (166), Expect = 2e-14
 Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 14  DSNELGIYIERQDGGAHFSPYL----ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
           DS  LGI I     GA          +  +  GGA HRDGR  V D L++V+   L G+T
Sbjct: 13  DSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVT 72

Query: 70  IQEAREALNNKDSHVEIVICRNPDDAKS 97
              A   L N    V  +I R     +S
Sbjct: 73  QSFAASVLRNTKGRVRFMIGRERPGEQS 100

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 93.7 bits (233), Expect = 3e-24
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 214 PKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLR 270
            + +    +TVT QK    +  G ++ GGRD+P    G   I +  +   G A  +  L+
Sbjct: 8   MEEVIWEQYTVTLQKDSK-RGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQ 64

Query: 271 EGDEIIAINGVPLENKTHAEAIAMFKD 297
           E D ++ +NG P+E+  H+ A+   + 
Sbjct: 65  ENDRVVMVNGTPMEDVLHSFAVQQLRK 91

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 9   RVVKDDSNELGIYI----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
            + KD     GI +    +        +  +IS + PGG    DG     D ++ VN   
Sbjct: 19  TLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGP--ADGLLQENDRVVMVNGTP 76

Query: 65  LKGLTIQEAREALNNKDSHVEIVICRNPD 93
           ++ +    A + L        IV+ R   
Sbjct: 77  MEDVLHSFAVQQLRKSGKIAAIVVKRPRK 105

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 93.2 bits (232), Expect = 4e-24
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 7/86 (8%)

Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRD------SPKGNLGIFVKTIFQSGQAAENEKLRE 271
           S+    V   + P  KSLG SIVGGR       + +   GIF+K + +   A +N  L+ 
Sbjct: 2   SMQPRRVELWREPS-KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKP 60

Query: 272 GDEIIAINGVPLENKTHAEAIAMFKD 297
           GD I+ ++G+ L + +H +A+   + 
Sbjct: 61  GDRIVEVDGMDLRDASHEQAVEAIRK 86

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 9  RVVKDDSNELGIYI-------ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
           + ++ S  LGI I        R   G       I H+       ++G    GD +++V+
Sbjct: 9  ELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVD 68

Query: 62 DKRLKGLTIQEAREALNNKDSHVEIVICR 90
             L+  + ++A EA+    + V  ++  
Sbjct: 69 GMDLRDASHEQAVEAIRKAGNPVVFMVQS 97

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 93.1 bits (232), Expect = 4e-24
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLREGDE 274
           S+   T+T  +  G   LG SI GG+ S      + GIF+  + + G  A    +R GD+
Sbjct: 1   SMEELTLTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEG-PAARAGVRVGDK 57

Query: 275 IIAINGVPLENKTHAEAIAMFKD 297
           ++ +NGV L+   H EA+   + 
Sbjct: 58  LLEVNGVALQGAEHHEAVEALRG 80

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 14 DSNELGIYI----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
           +  LGI I                 IS +   G   R G   VGD+L++VN   L+G  
Sbjct: 12 QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAE 70

Query: 70 IQEAREALNNKDSHVEIVICRNPDDA 95
            EA EAL    + V++ + R  + +
Sbjct: 71 HHEAVEALRGAGTAVQMRVWRERETS 96

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 93.3 bits (232), Expect = 5e-24
 Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 207 SNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAEN 266
           S+ +   P     +   +T  K  G   LG  I+GG +  +G   +++  +   G   ++
Sbjct: 2   SSGSSGSPLDRDPAFRVITVTKETG---LGLKILGGINRNEGP-LVYIHEVIPGGDCYKD 57

Query: 267 EKLREGDEIIAINGVPLENKTHAEAIAMFK 296
            +L+ GD++++IN   +   +  EA ++  
Sbjct: 58  GRLKPGDQLVSINKESMIGVSFEEAKSIIT 87

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 62.1 bits (151), Expect = 2e-12
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 6/94 (6%)

Query: 2   EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
           +  F+V  V K+    LG+ I             I  + PGG  ++DGR   GD+L+ +N
Sbjct: 13  DPAFRVITVTKETG--LGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSIN 70

Query: 62  DKRLKGLTIQEA----REALNNKDSHVEIVICRN 91
            + + G++ +EA      A    +S  EI   R+
Sbjct: 71  KESMIGVSFEEAKSIITRAKLRSESPWEIAFIRS 104

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 92.8 bits (231), Expect = 7e-24
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
             +   KG     LG SIVGG+D+P     I +  +++ G AA + +L  GD+I+ +NGV
Sbjct: 19  MIIEISKGR--SGLGLSIVGGKDTPLN--AIVIHEVYEEGAAARDGRLWAGDQILEVNGV 74

Query: 282 PLENKTHAEAIAMFK 296
            L N +H EAI   +
Sbjct: 75  DLRNSSHEEAITALR 89

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 69.0 bits (169), Expect = 5e-15
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 10  VVKDDSNELGIYIERQDGGAHF--SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
            +    + LG+ I    GG     +  +I  +   GA  RDGR   GD++++VN   L+ 
Sbjct: 22  EISKGRSGLGLSIV---GGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRN 78

Query: 68  LTIQEAREALNNKDSHVEIVICRNPDDAKSATNC 101
            + +EA  AL      V +V+ R+    +   + 
Sbjct: 79  SSHEEAITALRQTPQKVRLVVYRDEAHYRDEESG 112

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 91.9 bits (229), Expect = 8e-24
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 5/75 (6%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
             V   K      LGF+I+GG++    N  I++  +   G A  +  L+ GD+++++NGV
Sbjct: 7   GVVELPKTDE--GLGFNIMGGKEQ---NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGV 61

Query: 282 PLENKTHAEAIAMFK 296
            +E + H +A+ + K
Sbjct: 62  SVEGEQHEKAVELLK 76

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 66.5 bits (163), Expect = 2e-14
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 13 DDSNELGIYIERQDGGAHFS---------PYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
             +   + + + D G  F+         P  IS + PGG   R G    GD+L+ VN  
Sbjct: 2  SSGSSGVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGV 61

Query: 64 RLKGLTIQEAREALNNKDSHVEIVICRNP 92
           ++G   ++A E L      V++V+   P
Sbjct: 62 SVEGEQHEKAVELLKAAQGSVKLVVRSGP 90

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 92.4 bits (230), Expect = 8e-24
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 207 SNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQA 263
           S+ +   P  +     T+T  +  G   LG SI GG+ S      + GIF+  + + G  
Sbjct: 2   SSGSSGEPARIEEEELTLTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEG-P 58

Query: 264 AENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
           A    +R GD+++ +NGV L+   H EA+   +
Sbjct: 59  AARAGVRVGDKLLEVNGVALQGAEHHEAVEALR 91

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 54.7 bits (132), Expect = 8e-10
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 1   MEKQFKVFRVVKDDSNELGIYIERQDGGAHF----SPYLISHIEPGGAIHRDGRFHVGDE 56
           +E++     +++     LGI I    G   +        IS +   G   R G   VGD+
Sbjct: 12  IEEEELTLTILRQTGG-LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDK 69

Query: 57  LIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD 93
           L++VN   L+G    EA EAL    + V++ + R   
Sbjct: 70  LLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESG 106

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 91.6 bits (228), Expect = 1e-23
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            VT +K      LG SI GGR++    + I +  IF+   A + E L  GD I+++NG  
Sbjct: 7   RVTVRKADA-GGLGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGED 62

Query: 283 LENKTHAEAIAMFKD 297
           L + TH EA+   K 
Sbjct: 63  LSSATHDEAVQALKK 77

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 64.2 bits (157), Expect = 1e-13
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 4  QFKVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVND 62
          Q +   V K D+  LGI I+   GG  +  P LIS I  G A  +     VGD ++ VN 
Sbjct: 4  QRRRVTVRKADAGGLGISIK---GGRENKMPILISKIFKGLAADQTEALFVGDAILSVNG 60

Query: 63 KRLKGLTIQEAREALNNKDSHVEIVICR 90
          + L   T  EA +AL      V + +  
Sbjct: 61 EDLSSATHDEAVQALKKTGKEVVLEVKY 88

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 92.4 bits (230), Expect = 1e-23
 Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 6/90 (6%)

Query: 207 SNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAEN 266
           S+ +  RP   +     +   KG     LGF+IVGG D      GIFV  I   G A  +
Sbjct: 2   SSGSSGRPGGDAREPRKIILHKGST--GLGFNIVGGEDGE----GIFVSFILAGGPADLS 55

Query: 267 EKLREGDEIIAINGVPLENKTHAEAIAMFK 296
            +LR GD I+++NGV L N TH +A A  K
Sbjct: 56  GELRRGDRILSVNGVNLRNATHEQAAAALK 85

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 68.2 bits (167), Expect = 1e-14
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 10  VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
           ++   S  LG  I    GG       +S I  GG     G    GD ++ VN   L+  T
Sbjct: 20  ILHKGSTGLGFNIV---GGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNAT 76

Query: 70  IQEAREALNNKDSHVEIVICRNPDD 94
            ++A  AL      V IV    P++
Sbjct: 77  HEQAAAALKRAGQSVTIVAQYRPEE 101

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 91.7 bits (228), Expect = 2e-23
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
            TVT  + PG    G +I GGRD+P    G   I +  + + G A    +L+E D +  +
Sbjct: 9   HTVTLHRAPG-FGFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMV 65

Query: 279 NGVPLENKTHAEAIAMFKD 297
           NGV ++N  HA A+   + 
Sbjct: 66  NGVSMDNVEHAFAVQQLRK 84

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 9   RVVKDDSNELGIYI----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
            + +      GI I    +     +  +  +IS +  GG    +G+    D +  VN   
Sbjct: 12  TLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGP--AEGQLQENDRVAMVNGVS 69

Query: 65  LKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATN 100
           +  +    A + L     + +I I R        T 
Sbjct: 70  MDNVEHAFAVQQLRKSGKNAKITIRRKKGGGWRRTT 105

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 89.8 bits (223), Expect = 9e-23
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 195 HNRSNVAATPNNSNATVKRPKSLSLS-MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIF 253
           H+  +     ++ +   +  ++L    +  V   K    + LG SI GG++     + I 
Sbjct: 1   HHHHHHHHHHSSGHIEGRHMENLYFQGIRKVLLLKEDH-EGLGISITGGKEH---GVPIL 56

Query: 254 VKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD 297
           +  I     A     L  GD I+A+NGV L +  H EA+ +   
Sbjct: 57  ISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ 100

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 64.0 bits (156), Expect = 3e-13
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 9   RVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
            ++K+D   LGI I    GG  H  P LIS I PG    R G  HVGD ++ VN   L+ 
Sbjct: 32  LLLKEDHEGLGISIT---GGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRD 88

Query: 68  LTIQEAREALNNKDSHVEIVI 88
              +EA   L+ +   +E  +
Sbjct: 89  TKHKEAVTILSQQRGEIEFEV 109

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 89.4 bits (222), Expect = 1e-22
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 7/76 (9%)

Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
           +  V          LGF IVGG+ S     G+ V+TI   G A  + +L+ GD I+ I G
Sbjct: 16  VEEVELINDG--SGLGFGIVGGKTS-----GVVVRTIVPGGLADRDGRLQTGDHILKIGG 68

Query: 281 VPLENKTHAEAIAMFK 296
             ++  T  +   + +
Sbjct: 69  TNVQGMTSEQVAQVLR 84

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 70.1 bits (172), Expect = 2e-15
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 6   KVFRVV-KDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
            V  V   +D + LG  I    GG   S  ++  I PGG   RDGR   GD ++K+    
Sbjct: 15  HVEEVELINDGSGLGFGIV---GGKT-SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTN 70

Query: 65  LKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNC 101
           ++G+T ++  + L N  + V +++ R+P    S T+ 
Sbjct: 71  VQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSG 107

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 88.9 bits (221), Expect = 1e-22
 Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 7/79 (8%)

Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
           SL  F V   K  G K LG S+           G  +  + Q      + KL+ GD I  
Sbjct: 6   SLEKFNVDLMKKAG-KELGLSLSPNEI------GCTIADLIQGQYPEIDSKLQRGDIITK 58

Query: 278 INGVPLENKTHAEAIAMFK 296
            NG  LE      + A+FK
Sbjct: 59  FNGDALEGLPFQVSYALFK 77

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 72.3 bits (178), Expect = 2e-16
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 2  EKQFKVFRV--VKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
              + F V  +K    ELG+ +   + G       I+ +  G     D +   GD + K
Sbjct: 4  RNSLEKFNVDLMKKAGKELGLSLSPNEIGC-----TIADLIQGQYPEIDSKLQRGDIITK 58

Query: 60 VNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKS 97
           N   L+GL  Q +       +  V + + R    A S
Sbjct: 59 FNGDALEGLPFQVSYALFKGANGKVSMEVTRPKPAAAS 96

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 89.0 bits (221), Expect = 2e-22
 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 5/74 (6%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            VT +K PG   LGF+I GG+ S    LGIF+  +     A     L+EGD+++A+N V 
Sbjct: 18  IVTLKKPPG-AQLGFNIRGGKAS---QLGIFISKVIPDSDAHRA-GLQEGDQVLAVNDVD 72

Query: 283 LENKTHAEAIAMFK 296
            ++  H++A+ + K
Sbjct: 73  FQDIEHSKAVEILK 86

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 9   RVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
            + K    +LG  I    GG        IS + P    HR G    GD+++ VND   + 
Sbjct: 20  TLKKPPGAQLGFNIR---GGKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQD 75

Query: 68  LTIQEAREALNNKDSHVEIVICRNPD 93
           +   +A E L      + + +     
Sbjct: 76  IEHSKAVEILKTAR-EISMRVRFFSG 100

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 89.1 bits (221), Expect = 2e-22
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 16/106 (15%)

Query: 198 SNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSP------KGNLG 251
           S+ ++ PN S+    R          V   + P   SLG SIVGG+         +   G
Sbjct: 2   SSGSSGPNFSHWGPPR---------IVEIFREPN-VSLGISIVGGQTVIKRLKNGEELKG 51

Query: 252 IFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD 297
           IF+K + +   A +   L+ GD+I+ ++GV L+N +H+EA+   K+
Sbjct: 52  IFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKN 97

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 63.3 bits (154), Expect = 7e-13
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 9   RVVKDDSNELGIYI-------ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
            + ++ +  LGI I       +R   G       I  +       +      GD++++V+
Sbjct: 20  EIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVS 79

Query: 62  DKRLKGLTIQEAREALNNKDSHVEIVICRNPD 93
              L+  +  EA EA+ N  + V  ++     
Sbjct: 80  GVDLQNASHSEAVEAIKNAGNPVVFIVQSLSS 111

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 89.1 bits (221), Expect = 3e-22
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 212 KRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLRE 271
           +      L +  V   +   Q  LG ++    D    ++GI++  I  +  AA++ ++RE
Sbjct: 11  QEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDE-DDIGIYISEIDPNSIAAKDGRIRE 69

Query: 272 GDEIIAINGVPLENKTHAEAI 292
           GD II ING+ ++N+  A A+
Sbjct: 70  GDRIIQINGIEVQNREEAVAL 90

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 59.5 bits (144), Expect = 2e-11
 Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 1/102 (0%)

Query: 5   FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
            +V     +  ++LG+ +  +          IS I+P     +DGR   GD +I++N   
Sbjct: 21  EEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIE 80

Query: 65  LKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQP 106
           ++      A      ++ +  ++I R           D+  P
Sbjct: 81  VQNREEAVALLTS-EENKNFSLLIARPELQLDEGWMDDDSGP 121

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 88.3 bits (219), Expect = 4e-22
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 6/75 (8%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
             +   +G     LGF+IVGG D      GIF+  I   G A  + +LR+GD+I+++NGV
Sbjct: 16  RRIVIHRGST--GLGFNIVGGEDGE----GIFISFILAGGPADLSGELRKGDQILSVNGV 69

Query: 282 PLENKTHAEAIAMFK 296
            L N +H +A    K
Sbjct: 70  DLRNASHEQAAIALK 84

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 68.6 bits (168), Expect = 8e-15
 Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 3/98 (3%)

Query: 10  VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
           V+   S  LG  I    GG       IS I  GG     G    GD+++ VN   L+  +
Sbjct: 19  VIHRGSTGLGFNIV---GGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 75

Query: 70  IQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPN 107
            ++A  AL N    V I+    P++         +  +
Sbjct: 76  HEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDSS 113

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 87.4 bits (217), Expect = 7e-22
 Identities = 23/78 (29%), Positives = 29/78 (37%), Gaps = 7/78 (8%)

Query: 219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
           L  F V   K  G K LG S+           G  +  + Q      + KL+ GD I   
Sbjct: 1   LEKFNVDLMKKAG-KELGLSLSPNEI------GCTIADLIQGQYPEIDSKLQRGDIITKF 53

Query: 279 NGVPLENKTHAEAIAMFK 296
           NG  LE        A+FK
Sbjct: 54  NGDALEGLPFQVCYALFK 71

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 69.3 bits (170), Expect = 3e-15
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 1  MEKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
          +EK F V  ++K    ELG+ +   + G       I+ +  G     D +   GD + K 
Sbjct: 1  LEK-FNV-DLMKKAGKELGLSLSPNEIGC-----TIADLIQGQYPEIDSKLQRGDIITKF 53

Query: 61 NDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKS 97
          N   L+GL  Q         +  V + + R    +  
Sbjct: 54 NGDALEGLPFQVCYALFKGANGKVSMEVTRPKPGSGG 90

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 87.5 bits (217), Expect = 8e-22
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
            +V   K      LGF +      P     + +  + + G A ++  ++ GD I+A+N  
Sbjct: 3   ISVRLFKRKV-GGLGFLVKERVSKP----PVIISDLIRGGAAEQSGLIQAGDIILAVNDR 57

Query: 282 PLENKTHAEAIAMFKDI 298
           PL + ++  A+ + + I
Sbjct: 58  PLVDLSYDSALEVLRGI 74

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 63.7 bits (155), Expect = 5e-13
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 9  RVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
          R+ K     LG  ++         P +IS +  GGA  + G    GD ++ VND+ L  L
Sbjct: 6  RLFKRKVGGLGFLVK---ERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 62

Query: 69 TIQEAREALNNKDSHVEI-VICRNPDD 94
          +   A E L    S   + +I R P+ 
Sbjct: 63 SYDSALEVLRGIASETHVVLILRGPEG 89

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 87.2 bits (216), Expect = 1e-21
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            V    G G+ SLG +I GG +     LGI++  +   G  AE   L+ GD+I+ +NG  
Sbjct: 23  KVNLVLGDGR-SLGLTIRGGAEY---GLGIYITGVDP-GSEAEGSGLKVGDQILEVNGRS 77

Query: 283 LENKTHAEAIAMFK 296
             N  H EA+ + K
Sbjct: 78  FLNILHDEAVRLLK 91

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 55.2 bits (133), Expect = 7e-10
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 5/105 (4%)

Query: 9   RVVKDDSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
            +V  D   LG+ I    GGA +     I+ ++PG      G   VGD++++VN +    
Sbjct: 25  NLVLGDGRSLGLTIR---GGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLN 80

Query: 68  LTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLP 112
           +   EA   L +    +  V           T  +       + P
Sbjct: 81  ILHDEAVRLLKSSRHLILTVKDVGRLPHARTTVDETKWIASSSGP 125

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 86.3 bits (214), Expect = 2e-21
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 216 SLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGN----LGIFVKTIFQSGQAAENEKLRE 271
           S SL    V   +    +  GF I+   + P+      +   +  I     A    KL+ 
Sbjct: 6   SGSLQTSDVVIHRKEN-EGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKV 64

Query: 272 GDEIIAINGVPLENKTHAEAIAMFKD 297
           GD I+A+NG  + N  HA+ + + KD
Sbjct: 65  GDRILAVNGQSIINMPHADIVKLIKD 90

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 66.7 bits (163), Expect = 4e-14
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 10  VVKDDSNELGIYI-----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
           + + ++   G  I       + G     P+ I  I  G    R  +  VGD ++ VN + 
Sbjct: 16  IHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQS 75

Query: 65  LKGLTIQEAREALNNKDSHVEIVICRNPD 93
           +  +   +  + + +    V + I    +
Sbjct: 76  IINMPHADIVKLIKDAGLSVTLRIIPQEE 104

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 86.2 bits (214), Expect = 2e-21
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 213 RPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREG 272
             + +      +   +G     LGF+IVGG        GIF+  I   G A  + +LR+G
Sbjct: 4   GEEDIPREPRRIVIHRGST--GLGFNIVGGEXGE----GIFISFILAGGPADLSGELRKG 57

Query: 273 DEIIAINGVPLENKTHAEAIAMFK 296
           D+I+++NGV L N +H +A    K
Sbjct: 58  DQILSVNGVDLRNASHEQAAIALK 81

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 66.2 bits (162), Expect = 4e-14
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
          V+   S  LG  I    GG       IS I  GG     G    GD+++ VN   L+  +
Sbjct: 16 VIHRGSTGLGFNIV---GGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 72

Query: 70 IQEAREALNNKDSHVEIVICRNPDD 94
           ++A  AL N    V I+    P++
Sbjct: 73 HEQAAIALKNAGQTVTIIAQYKPEE 97

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 88.3 bits (219), Expect = 3e-21
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 216 SLSLSMFTVTFQKGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGD 273
           S S+    +T ++G     LGFSI GG D+P    +  IF+  I   G AA++ +LR  D
Sbjct: 1   SGSMEYEEITLERGNS--GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVND 58

Query: 274 EIIAINGVPLENKTHAEAIAMFKD 297
            I+ +N V +   TH+ A+   K+
Sbjct: 59  SILFVNEVDVREVTHSAAVEALKE 82

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 86.0 bits (213), Expect = 2e-20
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 210 TVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQAAENE 267
            V R K  +  +  +   KGP  K LGFSI GG  +    G+  I+V  I + G A ++ 
Sbjct: 90  YVMRRKPPAEKVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDG 147

Query: 268 KLREGDEIIAINGVPLENKTHAEAIAMFK 296
           +L+ GD+I+A+N V LE+  H +A+A  K
Sbjct: 148 RLQIGDKILAVNSVGLEDVMHEDAVAALK 176

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 70.5 bits (173), Expect = 1e-14
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 4/101 (3%)

Query: 1   MEKQFKVFRVVKDDSNELGIYIERQDGGAHFS---PYLISHIEPGGAIHRDGRFHVGDEL 57
              +  +   +      LG  I    G  H        ++ I  GGA H+DGR  +GD++
Sbjct: 96  PPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKI 155

Query: 58  IKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSA 98
           + VN   L+ +  ++A  AL N    V + + + P +A++ 
Sbjct: 156 LAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK-PSNAETM 195

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 67.5 bits (165), Expect = 1e-13
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 6/106 (5%)

Query: 10  VVKDDSNELGIYI----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
            ++  ++ LG  I    +    G   S + I+ I PGGA  +DGR  V D ++ VN+  +
Sbjct: 10  TLERGNSGLGFSIAGGTDNPHIGDDPSIF-ITKIIPGGAAAQDGRLRVNDSILFVNEVDV 68

Query: 66  KGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNL 111
           + +T   A EAL    S V + + R             L   PK L
Sbjct: 69  REVTHSAAVEALKEAGSIVRLYVMRRKPP-AEKVMEIKLIKGPKGL 113

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 85.5 bits (212), Expect = 3e-21
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            V   K   +  LG SI GG++     + I +  I     A     L  GD I+A+NGV 
Sbjct: 12  KVLLLKEDHE-GLGISITGGKEH---GVPILISEIHPGQPADRCGGLHVGDAILAVNGVN 67

Query: 283 LENKTHAEAIAMFKD 297
           L +  H EA+ +   
Sbjct: 68  LRDTKHKEAVTILSQ 82

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 63.5 bits (155), Expect = 4e-13
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 9  RVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
           ++K+D   LGI I    GG  H  P LIS I PG    R G  HVGD ++ VN   L+ 
Sbjct: 14 LLLKEDHEGLGISIT---GGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRD 70

Query: 68 LTIQEAREALNNKDSHVEIVICRNPDD 94
             +EA   L+ +   +E  +     +
Sbjct: 71 TKHKEAVTILSQQRGEIEFEVVYVALE 97

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 84.3 bits (209), Expect = 7e-21
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
           +V  +K P    LGFS+ GG +     LGIFV  +   G +AE   L  GD+I  +NG+ 
Sbjct: 13  SVRVEKSPAG-RLGFSVRGGSEH---GLGIFVSKVE-EGSSAERAGLCVGDKITEVNGLS 67

Query: 283 LENKTHAEAIAMFK 296
           LE+ T   A+ +  
Sbjct: 68  LESTTMGSAVKVLT 81

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 9   RVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
           RV K  +  LG  +    GG+ H     +S +E G +  R G   VGD++ +VN   L+ 
Sbjct: 15  RVEKSPAGRLGFSVR---GGSEHGLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLES 70

Query: 68  LTIQEAREALNNKDSHVEIVICRNPDDAKSA 98
            T+  A + L +    + +++ R      S 
Sbjct: 71  TTMGSAVKVLTSSS-RLHMMVRRMGSGPSSG 100

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 85.3 bits (211), Expect = 7e-21
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
            +V   K      LGF +      P     + +  + + G A ++  ++ GD I+A+N  
Sbjct: 10  ISVRLFKRKV-GGLGFLVKERVSKP----PVIISDLIRGGAAEQSGLIQAGDIILAVNDR 64

Query: 282 PLENKTHAEAIAMFKDI 298
           PL + ++  A+ + + I
Sbjct: 65  PLVDLSYDSALEVLRGI 81

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 67.2 bits (164), Expect = 4e-14
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 9  RVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
          R+ K     LG  ++         P +IS +  GGA  + G    GD ++ VND+ L  L
Sbjct: 13 RLFKRKVGGLGFLVK---ERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 69

Query: 69 TIQEAREALNNKDSHVEIVICRNPDDA 95
          +   A E L    S   +V+     + 
Sbjct: 70 SYDSALEVLRGIASETHVVLILRGPEG 96

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 84.4 bits (209), Expect = 8e-21
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 216 SLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEI 275
           S   S   V  +K     +LG +I GG ++ +      + TI + G A    +L+ G  I
Sbjct: 2   SSGSSGTLVRVKKSAA--TLGIAIEGGANTRQP--LPRIVTIQRGGSAHNCGQLKVGHVI 57

Query: 276 IAINGVPLENKTHAEAIAMFKDIFPQSSK 304
           + +NG+ L  K H EA  +  + F    +
Sbjct: 58  LEVNGLTLRGKEHREAARIIAEAFKTKDR 86

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 61.7 bits (150), Expect = 2e-12
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 10/96 (10%)

Query: 10  VVKDDSNELGIYIERQDGGA-HFSPY-LISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
            VK  +  LGI IE   GGA    P   I  I+ GG+ H  G+  VG  +++VN   L+G
Sbjct: 11  RVKKSAATLGIAIE---GGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRG 67

Query: 68  LTIQEAREALNN-----KDSHVEIVICRNPDDAKSA 98
              +EA   +          +++ ++        S 
Sbjct: 68  KEHREAARIIAEAFKTKDRDYIDFLVTEFNSGPSSG 103

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 83.5 bits (207), Expect = 1e-20
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
           ++TV  ++  G   LG +I G  +       I + ++ + G A     +  GD I+AIN 
Sbjct: 6   IYTVELKRYGG--PLGITISGTEEP---FDPIIISSLTKGGLAERTGAIHIGDRILAINS 60

Query: 281 VPLENKTHAEAIAMFK 296
             L+ K  +EAI + +
Sbjct: 61  SSLKGKPLSEAIHLLQ 76

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 68.1 bits (167), Expect = 8e-15
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 14 DSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA 73
              LGI I        F P +IS +  GG   R G  H+GD ++ +N   LKG  + EA
Sbjct: 14 YGGPLGITI--SGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEA 71

Query: 74 REALNNKDSHVEIVICRNPDDAKSAT 99
             L      V + I +  D   +++
Sbjct: 72 IHLLQMAGETVTLKIKKQTDAQPASS 97

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 87.9 bits (217), Expect = 2e-20
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 184 ISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGR 243
           +SP   +   +   + +        A  + P++L L    VT +K      LG SI GGR
Sbjct: 41  VSPADGEPGPEPEPAQLNGAAEPGAAPPQLPEALLLQRRRVTVRKADAG-GLGISIKGGR 99

Query: 244 DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD 297
           ++    + I +  IF+   A + E L  GD I+++NG  L + TH EA+   K 
Sbjct: 100 ENK---MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK 150

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 59.0 bits (142), Expect = 2e-10
 Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 4/99 (4%)

Query: 4   QFKVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVND 62
           Q +   V K D+  LGI I+   GG  +  P LIS I  G A  +     VGD ++ VN 
Sbjct: 77  QRRRVTVRKADAGGLGISIK---GGRENKMPILISKIFKGLAADQTEALFVGDAILSVNG 133

Query: 63  KRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNC 101
           + L   T  EA +AL      V + +    + +    N 
Sbjct: 134 EDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNS 172

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 86.3 bits (214), Expect = 2e-20
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 221 MFTVTFQKGPGQKSLGFSIVGGRD-SPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
              VT  K     + GF I GG       +  + +  +   G A     ++ GD +++++
Sbjct: 107 TVEVTLHKEGN--TFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVD 164

Query: 280 GVPLENKTHAEAIAMFK 296
           G+ L   THAEA+++ K
Sbjct: 165 GIRLLGTTHAEAMSILK 181

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 82.5 bits (204), Expect = 5e-19
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
             V   K  G  +LG ++ GG D    +    V  + Q G AA +++L  GD I A+NG+
Sbjct: 9   TVVELMKKEGT-TLGLTVSGGIDK---DGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGI 64

Query: 282 PLENKTHAEAIAMFK 296
            L    H E I++ K
Sbjct: 65  NLAKFRHDEIISLLK 79

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 72.1 bits (177), Expect = 3e-15
 Identities = 23/116 (19%), Positives = 38/116 (32%), Gaps = 4/116 (3%)

Query: 1   MEKQFKVFRVVKDDSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIK 59
             K   V  ++K +   LG+ +    GG        +S++  GG   R  +  VGD +  
Sbjct: 4   SFKGSTVVELMKKEGTTLGLTVS---GGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKA 60

Query: 60  VNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKN 115
           VN   L      E    L N    V + +           +    +     L K+ 
Sbjct: 61  VNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEG 116

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 70.5 bits (173), Expect = 9e-15
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 2/85 (2%)

Query: 10  VVKDDSNELGIYIE--RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
            +  + N  G  I     D      P +I+ + PGG   R+G    GD L+ V+  RL G
Sbjct: 111 TLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLG 170

Query: 68  LTIQEAREALNNKDSHVEIVICRNP 92
            T  EA   L        ++I  + 
Sbjct: 171 TTHAEAMSILKQCGQEATLLIEYDV 195

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 83.3 bits (206), Expect = 3e-20
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 3/77 (3%)

Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
              V   K PG  +LG S+       K    I +  I  +     +  L  GD I++I+G
Sbjct: 16  PLMVEIVKTPGS-ALGISLTTTSLRNKS--VITIDRIKPASVVDRSGALHPGDHILSIDG 72

Query: 281 VPLENKTHAEAIAMFKD 297
             +E+ +  EA  +   
Sbjct: 73  TSMEHCSLLEATKLLAS 89

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 71.3 bits (175), Expect = 7e-16
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 9   RVVKDDSNELGIYIERQDGGAHF--SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLK 66
            +VK   + LGI +      +    S   I  I+P   + R G  H GD ++ ++   ++
Sbjct: 20  EIVKTPGSALGISLT---TTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSME 76

Query: 67  GLTIQEAREALNNKDSHVEIVICRNPDDAKSAT 99
             ++ EA + L +    V + I   P   +   
Sbjct: 77  HCSLLEATKLLASISEKVRLEILPVPQSQRPLR 109

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 82.0 bits (203), Expect = 4e-20
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
           S+  F V  +        GF + GG+D    N+ + +  +   G+AA+   +  GD +++
Sbjct: 1   SMDSFKVVLEGPAP---WGFRLQGGKDF---NVPLSISRLTPGGKAAQA-GVAVGDWVLS 53

Query: 278 INGVPLENKTHAEAIAMFK 296
           I+G    + TH EA    +
Sbjct: 54  IDGENAGSLTHIEAQNKIR 72

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 8  FRVVKDDSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLK 66
          F+VV +     G  ++   GG  F+ P  IS + PGG   + G   VGD ++ ++ +   
Sbjct: 5  FKVVLEGPAPWGFRLQ---GGKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAG 60

Query: 67 GLTIQEAREALNNKDSHVEIVICRNP 92
           LT  EA+  +      + + + R  
Sbjct: 61 SLTHIEAQNKIRACGERLSLGLSRAI 86

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 83.0 bits (205), Expect = 4e-20
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKG-NLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
             V     P     G  + G   + +  +    +  I     A     L+ GD ++AING
Sbjct: 17  TEVVLTADPVT-GFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAING 75

Query: 281 VPLENKTHAEAIAMFKD 297
           +P E+ T  EA  + +D
Sbjct: 76  IPTEDSTFEEANQLLRD 92

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 64.1 bits (156), Expect = 4e-13
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 10  VVKDDSNELGIYIE--RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
           +  D     GI ++          SP LIS+IE      R G   +GD ++ +N    + 
Sbjct: 21  LTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTED 80

Query: 68  LTIQEAREALNNKDSHVEIVICRNPDDAKS 97
            T +EA + L +     ++ +    D A+S
Sbjct: 81  STFEEANQLLRDSSITSKVTLEIEFDVAES 110

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 81.7 bits (202), Expect = 6e-20
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 10/80 (12%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPK-----GNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
            V  +K P    LGFSI GG           + GIFV  +   G A++   L+ GD+II 
Sbjct: 6   RVRVEKDPE---LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQ 60

Query: 278 INGVPLENKTHAEAIAMFKD 297
            NG    N  H +A+++ K 
Sbjct: 61  ANGYSFINIEHGQAVSLLKT 80

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 8/92 (8%)

Query: 5  FKVFRVVKDDSNELGIYI------ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELI 58
              RV  +   ELG  I                   ++ ++P G          GD++I
Sbjct: 2  SMEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGP--ASKLLQPGDKII 59

Query: 59 KVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
          + N      +   +A   L    + VE++I R
Sbjct: 60 QANGYSFINIEHGQAVSLLKTFQNTVELIIVR 91

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 80.8 bits (200), Expect = 1e-19
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 7/79 (8%)

Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
           S+S ++V+          GF + GG+D    N+ + + ++   G  A    +R GD +++
Sbjct: 1   SMSNYSVSLVGPAP---WGFRLQGGKD---FNMPLTISSLKDGG-KAAQANVRIGDVVLS 53

Query: 278 INGVPLENKTHAEAIAMFK 296
           I+G+  +  TH EA    K
Sbjct: 54  IDGINAQGMTHLEAQNKIK 72

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 51.1 bits (123), Expect = 8e-09
 Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 8  FRVVKDDSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLK 66
          + V        G  ++   GG  F+ P  IS ++ GG   +     +GD ++ ++    +
Sbjct: 5  YSVSLVGPAPWGFRLQ---GGKDFNMPLTISSLKDGGKAAQ-ANVRIGDVVLSIDGINAQ 60

Query: 67 GLTIQEAREALNNKDSHVEIVICRNPD 93
          G+T  EA+  +      + + + R  D
Sbjct: 61 GMTHLEAQNKIKGCTGSLNMTLQRESD 87

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 81.2 bits (201), Expect = 1e-19
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
             V  Q G      GF++ GG +       + V  I   G+AA ++K+R GDE++ ING 
Sbjct: 13  VPVQLQGGAP---WGFTLKGGLEH---CEPLTVSKIEDGGKAALSQKMRTGDELVNINGT 66

Query: 282 PLENKTHAEAIAMFK 296
           PL   +  EA+ + K
Sbjct: 67  PLYG-SRQEALILIK 80

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 5   FKVFRVVKDDSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
           F+   V        G  ++   GG     P  +S IE GG      +   GDEL+ +N  
Sbjct: 10  FQYVPVQLQGGAPWGFTLK---GGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGT 66

Query: 64  RLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSA 98
            L G + QEA   +      +++++ R      S 
Sbjct: 67  PLYG-SRQEALILIKGSFRILKLIVRRRNSGPSSG 100

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 81.4 bits (201), Expect = 2e-19
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 207 SNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAEN 266
           S+ +   P +       V       +  LG SI  G        GIF+  +   G  +  
Sbjct: 2   SSGSSGSPGNRENKEKKVFISLVGSR-GLGCSISSGPIQ---KPGIFISHVK-PGSLSAE 56

Query: 267 EKLREGDEIIAINGVPLENKTHAEAIAMFK 296
             L  GD+I+ +NGV   N  H EA+ + K
Sbjct: 57  VGLEIGDQIVEVNGVDFSNLDHKEAVNVLK 86

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 52.9 bits (127), Expect = 4e-09
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 6   KVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
           K   +    S  LG  I     G        ISH++PG      G   +GD++++VN   
Sbjct: 17  KKVFISLVGSRGLGCSIS---SGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVD 72

Query: 65  LKGLTIQEAREALNNKDSHVEIVICRNPDD 94
              L  +EA   L +  S    ++     +
Sbjct: 73  FSNLDHKEAVNVLKSSRSLTISIVAAAGRE 102

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 80.6 bits (199), Expect = 2e-19
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 10/80 (12%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPK-----GNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
            V  +K P    LGFSI GG           + GIFV  +   G A++   L+ GD+II 
Sbjct: 14  RVRVEKDPE---LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQ 68

Query: 278 INGVPLENKTHAEAIAMFKD 297
            NG    N  H +A+++ K 
Sbjct: 69  ANGYSFINIEHGQAVSLLKT 88

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 2  EKQFKVFRVVKDDSNELGIYI------ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGD 55
          E   +  RV  +   ELG  I                   ++ ++P G          GD
Sbjct: 7  ELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGP--ASKLLQPGD 64

Query: 56 ELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
          ++I+ N      +   +A   L    + VE++I R
Sbjct: 65 KIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 99

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 82.9 bits (205), Expect = 3e-19
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPK-GNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
             V     P     G  + G   + +  +    +  I     A     L+ GD ++AING
Sbjct: 8   TEVVLTADPVT-GFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAING 66

Query: 281 VPLENKTHAEAIAMFKD 297
           +P E+ T  EA  + +D
Sbjct: 67  IPTEDSTFEEANQLLRD 83

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 81.0 bits (200), Expect = 2e-18
 Identities = 25/85 (29%), Positives = 45/85 (52%)

Query: 9   RVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
           ++ K  S ELGI I          P +IS I+ G   HR G   +GD+L+ +++ RL   
Sbjct: 112 KLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSC 171

Query: 69  TIQEAREALNNKDSHVEIVICRNPD 93
           ++++A + L   +  V++ I ++ D
Sbjct: 172 SMEDAVQILQQCEDLVKLKIRKDED 196

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 79.4 bits (196), Expect = 6e-18
 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 202 ATPNNSNATVKRPKSLSLS------MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVK 255
            +   S  T++    ++ S       F V   K      LG +I        G+  + + 
Sbjct: 83  DSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSV-ELGITISSPSSRKPGD-PLVIS 140

Query: 256 TIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD 297
            I +   A     L  GD+++AI+ + L++ +  +A+ + + 
Sbjct: 141 DIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQ 182

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 71.0 bits (174), Expect = 6e-15
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 10  VVKDDSNELGIYIE--RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
           +  D     GI ++          SP LIS+IE      R G   +GD ++ +N    + 
Sbjct: 12  LTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTED 71

Query: 68  LTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQ 105
            T +EA + L +     ++ +    D A+S        
Sbjct: 72  STFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTF 109

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 79.7 bits (197), Expect = 3e-19
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
           + +  VT  K  G +  GFS+  G        G++VK I  +G   +   L+  D ++ +
Sbjct: 5   VELHKVTLYKDSGMEDFGFSVADGLLEK----GVYVKNIRPAG-PGDLGGLKPYDRLLQV 59

Query: 279 NGVPLENKTHAEAIAMFK 296
           N V   +      + +  
Sbjct: 60  NHVRTRDFDCCLVVPLIA 77

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 51.2 bits (123), Expect = 7e-09
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 9  RVVKDDSNE-LGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
           + KD   E  G  +     G       + +I P G     G     D L++VN  R + 
Sbjct: 11 TLYKDSGMEDFGFSVA---DGLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRD 66

Query: 68 LTIQEAREALNNKDSHVEIVICRNP 92
                   +    + +++VI RNP
Sbjct: 67 FDCCLVVPLIAESGNKLDLVISRNP 91

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 79.9 bits (197), Expect = 5e-19
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 205 NNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAA 264
           ++             ++  +  +        GF++ GG D     + + V  +     A 
Sbjct: 2   SSPEKPTPNGGIPHDNLVLIRMKPDEN-GRFGFNVKGGYDQ---KMPVIVSRVAPGTPAD 57

Query: 265 ENE-KLREGDEIIAINGVPLENKTHAEAIAMFK 296
               +L EGD+++ ING  +   TH + +   K
Sbjct: 58  LCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIK 90

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 52.5 bits (126), Expect = 4e-09
 Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 9   RVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHR-DGRFHVGDELIKVNDKRLK 66
           R+  D++   G  ++   GG     P ++S + PG        R + GD+++ +N + + 
Sbjct: 22  RMKPDENGRFGFNVK---GGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 78

Query: 67  GLTIQEAREALNNKDSHVEIVI 88
             T  +    +          +
Sbjct: 79  EHTHDQVVLFIKASCERHSGEL 100

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 79.4 bits (196), Expect = 6e-19
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 2/84 (2%)

Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
           +   V  +K  G + LG ++V             +  +   G A  +  L  GD + AIN
Sbjct: 9   NCREVHLEKRRG-EGLGVALVESGWGSLLP-TAVIANLLHGGPAERSGALSIGDRLTAIN 66

Query: 280 GVPLENKTHAEAIAMFKDIFPQSS 303
           G  L     A   A  ++   Q+S
Sbjct: 67  GTSLVGLPLAACQAAVRETKSQTS 90

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 74.0 bits (182), Expect = 5e-17
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 2  EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
              +   + K     LG+ +     G+     +I+++  GG   R G   +GD L  +N
Sbjct: 7  GDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAIN 66

Query: 62 DKRLKGLTIQEAREALNN--KDSHVEIVICRNP 92
             L GL +   + A+      + V + I   P
Sbjct: 67 GTSLVGLPLAACQAAVRETKSQTSVTLSIVHCP 99

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 78.8 bits (195), Expect = 6e-19
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
            +VT +        GF +VGGRD    +  + +  +  +G  A    L  GD I AING 
Sbjct: 10  HSVTLRGPSP---WGFRLVGGRDF---SAPLTISRVH-AGSKAALAALCPGDLIQAINGE 62

Query: 282 PLENKTHAEAIAMFK 296
             E  TH EA    K
Sbjct: 63  STELMTHLEAQNRIK 77

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 5/88 (5%)

Query: 6  KVFRVVKDDSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
              V     +  G  +    GG  FS P  IS +  G           GD +  +N + 
Sbjct: 8  MPHSVTLRGPSPWGFRLV---GGRDFSAPLTISRVHAGSKAALAA-LCPGDLIQAINGES 63

Query: 65 LKGLTIQEAREALNNKDSHVEIVICRNP 92
           + +T  EA+  +     H+ + +   P
Sbjct: 64 TELMTHLEAQNRIKGCHDHLTLSVSSGP 91

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 79.9 bits (197), Expect = 7e-19
 Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 198 SNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTI 257
            +  ++    N   +    L  SM  V F+KG     +G  + GG D     +GIFV  +
Sbjct: 7   HHHHSSGGTENLYFQGHMILRPSMKLVKFRKGDS---VGLRLAGGND-----VGIFVAGV 58

Query: 258 FQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
                 A  E L EGD+I+ +N V   N    EA+    
Sbjct: 59  -LEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLL 96

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 10  VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
           V     + +G+ +    GG     + ++ +       ++G    GD++++VN+     + 
Sbjct: 33  VKFRKGDSVGLRLA---GGNDVGIF-VAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNII 87

Query: 70  IQEAREALNNKDS--HVEIVICRNPDD 94
            +EA   L +      V I+  +  D 
Sbjct: 88  REEAVLFLLDLPKGEEVTILAQKKKDV 114

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 79.5 bits (196), Expect = 7e-19
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAE-NEKLREGDEIIAINGV 281
            +  +        GF++ GG D     + + V  +     A     +L EGD+++ ING 
Sbjct: 18  LIRMKPDEN-GRFGFNVKGGYDQ---KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGR 73

Query: 282 PLENKTHAEAIAMFK 296
            +   TH + +   K
Sbjct: 74  DIAEHTHDQVVLFIK 88

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 52.6 bits (126), Expect = 5e-09
 Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 9   RVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHR-DGRFHVGDELIKVNDKRLK 66
           R+  D++   G  ++   GG     P ++S + PG        R + GD+++ +N + + 
Sbjct: 20  RMKPDENGRFGFNVK---GGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 76

Query: 67  GLTIQEA----REALNNKDSHVEIVICRNP 92
             T  +     + +       + +++  N 
Sbjct: 77  EHTHDQVVLFIKASCERHSGELMLLVRPNA 106

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 79.9 bits (197), Expect = 8e-19
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKG------NLGIFVKTIFQSGQAAENEKLREGDEII 276
            V   K   +K LGF I  G              GIF+  +   G A     L   DE++
Sbjct: 32  RVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVL 91

Query: 277 AINGVPLENKTHAEAIAMFKD 297
            +NG+ +  K+  +   M   
Sbjct: 92  EVNGIEVSGKSLDQVTDMMIA 112

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 65.3 bits (159), Expect = 2e-13
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 8/96 (8%)

Query: 1   MEKQFKVFRVVKDDSNE-LGIYI-------ERQDGGAHFSPYLISHIEPGGAIHRDGRFH 52
           + +  +  R+ K  + + LG YI           G        IS + PGG     G   
Sbjct: 26  LPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLA 85

Query: 53  VGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVI 88
           V DE+++VN   + G ++ +  + +     ++ I +
Sbjct: 86  VNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITV 121

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 81.5 bits (201), Expect = 9e-19
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 5/74 (6%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            V   +    + LG S+ GG +      G+F+  + + G  A++  L+ GDEI+ ING  
Sbjct: 87  EVRLDR-LHPEGLGLSVRGGLEF---GCGLFISHLIK-GGQADSVGLQVGDEIVRINGYS 141

Query: 283 LENKTHAEAIAMFK 296
           + + TH E I + +
Sbjct: 142 ISSCTHEEVINLIR 155

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 55.0 bits (132), Expect = 3e-09
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 2   EKQFKVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
            ++ K  R+ +     LG+ +    GG        ISH+  GG     G   VGDE++++
Sbjct: 82  SRKLKEVRLDRLHPEGLGLSVR---GGLEFGCGLFISHLIKGGQADSVG-LQVGDEIVRI 137

Query: 61  NDKRLKGLTIQEAREALNNKDSHVEIVICRNP 92
           N   +   T +E    +  +   V I +    
Sbjct: 138 NGYSISSCTHEEVINLIRTEK-TVSIKVRHIG 168

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 78.5 bits (194), Expect = 9e-19
 Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 8/78 (10%)

Query: 220 SM-FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
           SM  TV           GF I GGRD    +  I V  + +    A++  LR GD I+AI
Sbjct: 1   SMALTVDVAGPAP---WGFRITGGRDF---HTPIMVTKVAE-RGKAKDADLRPGDIIVAI 53

Query: 279 NGVPLENKTHAEAIAMFK 296
           NG   E   HAEA +  +
Sbjct: 54  NGESAEGMLHAEAQSKIR 71

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 7  VFRVVKDDSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
             V        G  I    GG  F  P +++ +   G          GD ++ +N +  
Sbjct: 3  ALTVDVAGPAPWGFRIT---GGRDFHTPIMVTKVAERGKAKD-ADLRPGDIIVAINGESA 58

Query: 66 KGLTIQEAREALNNKDSHVEIVICR 90
          +G+   EA+  +    S + + + R
Sbjct: 59 EGMLHAEAQSKIRQSPSPLRLQLDR 83

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 78.1 bits (193), Expect = 1e-18
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 9/76 (11%)

Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
           M  V   K     +  + +  G         IFVK + ++G A ++  L EGD I+ ING
Sbjct: 1   MIGVLLMKSR--ANEEYGLRLGS-------QIFVKEMTRTGLATKDGNLHEGDIILKING 51

Query: 281 VPLENKTHAEAIAMFK 296
              EN +  +A  + +
Sbjct: 52  TVTENMSLTDARKLIE 67

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 64.3 bits (157), Expect = 1e-13
 Identities = 13/62 (20%), Positives = 32/62 (51%)

Query: 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRN 91
          S   +  +   G   +DG  H GD ++K+N    + +++ +AR+ +      +++V+ R+
Sbjct: 21 SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRD 80

Query: 92 PD 93
           +
Sbjct: 81 LE 82

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 78.8 bits (194), Expect = 2e-18
 Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 9/98 (9%)

Query: 202 ATPNNSNATVKRPKSLSLS-MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQS 260
           +       +  +    SL+ +       G     LG  ++           + +  +   
Sbjct: 8   SKNEKEQLSKAKASVSSLNKVIQTKLTVGN--LGLGLVVIQNGP------YLQISHLINK 59

Query: 261 GQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
           G AA +  L+ GD +I++    +   T  E + + ++I
Sbjct: 60  GAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNI 97

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 57.6 bits (139), Expect = 9e-11
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 8/92 (8%)

Query: 11  VKDDSNELGIYIERQDGGAHFS-----PYL-ISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
           V   +  +   +   + G         PYL ISH+   GA   DG    GD LI V    
Sbjct: 22  VSSLNKVIQTKLTVGNLGLGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHAN 81

Query: 65  LKGLTIQEAREALNN--KDSHVEIVICRNPDD 94
           + G T++E  + L N    + ++I   R   +
Sbjct: 82  VLGYTLREFLKLLQNITIGTVLQIKAYRGFLE 113

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 77.7 bits (192), Expect = 2e-18
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
           ++VT          GF + GG+D    N+ + +  I    +AA++ +L +GD ++AI+GV
Sbjct: 3   YSVTLTGPGP---WGFRLQGGKDF---NMPLTISRITPGSKAAQS-QLSQGDLVVAIDGV 55

Query: 282 PLENKTHAEAIAMFK 296
             +  TH EA    K
Sbjct: 56  NTDTMTHLEAQNKIK 70

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 7  VFRVVKDDSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
           + V        G  ++   GG  F+ P  IS I PG    +  +   GD ++ ++    
Sbjct: 2  AYSVTLTGPGPWGFRLQ---GGKDFNMPLTISRITPGSKAAQ-SQLSQGDLVVAIDGVNT 57

Query: 66 KGLTIQEAREALNNKDSHVEIVICRNP 92
            +T  EA+  + +   ++ + + ++ 
Sbjct: 58 DTMTHLEAQNKIKSASYNLSLTLQKSK 84

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 77.8 bits (192), Expect = 2e-18
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 7/79 (8%)

Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
           S++   +  Q        GF +VGG+D       + +  +   G  A    L  GD I A
Sbjct: 1   SMTTQQIDLQGPGP---WGFRLVGGKDF---EQPLAISRVT-PGSKAALANLCIGDVITA 53

Query: 278 INGVPLENKTHAEAIAMFK 296
           I+G    N TH EA    K
Sbjct: 54  IDGENTSNMTHLEAQNRIK 72

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 7  VFRVVKDDSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
            ++        G  +    GG  F  P  IS + PG          +GD +  ++ +  
Sbjct: 4  TQQIDLQGPGPWGFRLV---GGKDFEQPLAISRVTPGSKAAL-ANLCIGDVITAIDGENT 59

Query: 66 KGLTIQEAREALNNKDSHVEIVICRNPDDA 95
            +T  EA+  +     ++ + + R+  ++
Sbjct: 60 SNMTHLEAQNRIKGCTDNLTLTVARSEHES 89

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 78.3 bits (193), Expect = 2e-18
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 203 TPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQ 262
           +  +S    ++ +        V  QKG     LG SIV G        GI+V  +   G 
Sbjct: 2   SSGSSGGERRKDRPYVEEPRHVKVQKGSE--PLGISIVSGEKG-----GIYVSKVTV-GS 53

Query: 263 AAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
            A    L  GD+++  NG+ L + T  +A  +  
Sbjct: 54  IAHQAGLEYGDQLLEFNGINLRSATEQQARLIIG 87

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 55.6 bits (134), Expect = 4e-10
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 6   KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
           +  +V K     LGI I     G       +S +  G   H+ G    GD+L++ N   L
Sbjct: 21  RHVKVQKGSEP-LGISIV---SGEK-GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINL 74

Query: 66  KGLTIQEAREALNNKDSHVEIVICRNPDDAKSATN 100
           +  T Q+AR  +  +   + I+   NP   + +++
Sbjct: 75  RSATEQQARLIIGQQCDTITILAQYNPHVHQLSSH 109

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 77.8 bits (192), Expect = 2e-18
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
            +V+          GF + GG+D    N+ + + ++   G  A    +R GD +++I+G+
Sbjct: 7   GSVSLVGPAP---WGFRLQGGKDF---NMPLTISSLK-DGGKASQAHVRIGDVVLSIDGI 59

Query: 282 PLENKTHAEAIAMFK 296
             +  TH EA    K
Sbjct: 60  SAQGMTHLEAQNKIK 74

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 48.9 bits (117), Expect = 6e-08
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 27 GGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVE 85
          GG  F+ P  IS ++ GG   +     +GD ++ ++    +G+T  EA+  +      + 
Sbjct: 23 GGKDFNMPLTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLN 81

Query: 86 IVICRNPDDAKS 97
          + + R    AKS
Sbjct: 82 MTLQRASAAAKS 93

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 76.2 bits (188), Expect = 5e-18
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
             VT  K    +  G  +            IFVK I Q   AA +  ++EGD ++ ING 
Sbjct: 2   SKVTLVKSRKNEEYGLRLASH---------IFVKEISQDSLAARDGNIQEGDVVLKINGT 52

Query: 282 PLENKTHAEAIAMFK 296
             EN +  +A  + +
Sbjct: 53  VTENMSLTDAKTLIE 67

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 62.7 bits (153), Expect = 5e-13
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 5  FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
           KV  V    + E G+ +        F    +  I       RDG    GD ++K+N   
Sbjct: 2  SKVTLVKSRKNEEYGLRL----ASHIF----VKEISQDSLAARDGNIQEGDVVLKINGTV 53

Query: 65 LKGLTIQEAREALNNKDSHVEIVICRN 91
           + +++ +A+  +      +++V+ R+
Sbjct: 54 TENMSLTDAKTLIERSKGKLKMVVQRD 80

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 76.6 bits (189), Expect = 5e-18
 Identities = 30/81 (37%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 216 SLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEI 275
           S   S  TV           GF I GGRD    +  I V  + +    AE   LR GD I
Sbjct: 2   SSGSSGLTVDVAGPAP---WGFRISGGRDF---HTPIIVTKVTE-RGKAEAADLRPGDII 54

Query: 276 IAINGVPLENKTHAEAIAMFK 296
           +AING   EN  HAEA +  +
Sbjct: 55  VAINGQSAENMLHAEAQSKIR 75

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 6  KVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
              V        G  I    GG    +P +++ +   G          GD ++ +N + 
Sbjct: 6  SGLTVDVAGPAPWGFRIS---GGRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQS 61

Query: 65 LKGLTIQEAREALNNKDSHVEIVICRNPD 93
           + +   EA+  +    S + + + R+  
Sbjct: 62 AENMLHAEAQSKIRQSASPLRLQLDRSSG 90

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 75.4 bits (186), Expect = 1e-17
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 9/80 (11%)

Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
           S+ + TV   KGP     GF+I           G  VK I  S ++     L+EGD I+ 
Sbjct: 1   SMELITVHIVKGP--MGFGFTIADSPGGG----GQRVKQIVDSPRSR---GLKEGDLIVE 51

Query: 278 INGVPLENKTHAEAIAMFKD 297
           +N   ++  TH + + M  +
Sbjct: 52  VNKKNVQALTHNQVVDMLVE 71

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 75.1 bits (185), Expect = 2e-17
 Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 7/79 (8%)

Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
           S S   V           GF + GG D    N  + +  I   G  A    L  GD I+A
Sbjct: 3   SGSSGNVVLPGPAP---WGFRLSGGIDF---NQPLVITRIT-PGSKAAAANLCPGDVILA 55

Query: 278 INGVPLENKTHAEAIAMFK 296
           I+G   E+ THA+A    K
Sbjct: 56  IDGFGTESMTHADAQDRIK 74

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 8  FRVVKDDSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLK 66
            VV       G  +    GG  F+ P +I+ I PG           GD ++ ++    +
Sbjct: 7  GNVVLPGPAPWGFRLS---GGIDFNQPLVITRITPGSKAAA-ANLCPGDVILAIDGFGTE 62

Query: 67 GLTIQEAREALNNKDSHVEIVICRNPDDAKS 97
           +T  +A++ +      + + I R      S
Sbjct: 63 SMTHADAQDRIKAASYQLCLKIDRAETRLWS 93

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 74.7 bits (184), Expect = 2e-17
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 11/77 (14%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
            T+T  KG   +  GF+I           G  VK I           L EGD I+ IN  
Sbjct: 12  MTLTIVKGA--QGFGFTIADSPT------GQRVKQILDIQGCPG---LCEGDLIVEINQQ 60

Query: 282 PLENKTHAEAIAMFKDI 298
            ++N +H E + + KD 
Sbjct: 61  NVQNLSHTEVVDILKDC 77

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 73.6 bits (181), Expect = 7e-17
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 9/74 (12%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            VT  K    +  G  +            IFVK I Q   AA +  ++EGD ++ ING  
Sbjct: 5   KVTLVKSAKNEEYGLRLASH---------IFVKEISQDSLAARDGNIQEGDVVLKINGTV 55

Query: 283 LENKTHAEAIAMFK 296
            EN +  +A  + +
Sbjct: 56  TENMSLTDAKTLIE 69

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 61.3 bits (149), Expect = 2e-12
 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 9/84 (10%)

Query: 10 VVKDDSNE-LGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
          +VK   NE  G+ +         S   +  I       RDG    GD ++K+N    + +
Sbjct: 8  LVKSAKNEEYGLRLA--------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENM 59

Query: 69 TIQEAREALNNKDSHVEIVICRNP 92
          ++ +A+  +      +++V+ R+ 
Sbjct: 60 SLTDAKTLIERSKGKLKMVVQRDE 83

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 74.7 bits (183), Expect = 8e-17
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 15/111 (13%)

Query: 195 HNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSP-------- 246
           H+ S+       +       + + +       ++G     LGFSI GG D          
Sbjct: 5   HHHSSGVDLGTENLYFQSMVQRVEI----HKLRQGENL-ILGFSIGGGIDQDPSQNPFSE 59

Query: 247 -KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
            K + GI+V  + + G  AE   L+ GD+I+ +NG  +   TH +A     
Sbjct: 60  DKTDKGIYVTRVSEGG-PAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLT 109

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 47.7 bits (113), Expect = 4e-07
 Identities = 19/105 (18%), Positives = 46/105 (43%), Gaps = 12/105 (11%)

Query: 1   MEKQFKVFRVVKDDSNELGIYI----ERQDGGAHFS------PYLISHIEPGGAIHRDGR 50
           M ++ ++ ++ + ++  LG  I    ++      FS         ++ +  GG     G 
Sbjct: 23  MVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG- 81

Query: 51  FHVGDELIKVNDKRLKGLTIQEAREAL-NNKDSHVEIVICRNPDD 94
             +GD++++VN   +  +T  +AR+ L    +  V +++ R    
Sbjct: 82  LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQ 126

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 76.5 bits (188), Expect = 8e-17
 Identities = 26/96 (27%), Positives = 32/96 (33%), Gaps = 7/96 (7%)

Query: 201 AATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQS 260
                    TV R     L  F V   K  G K LG S+           G  +  + Q 
Sbjct: 94  TTYEKAVTLTVFRADPPELEKFNVDLMKKAG-KELGLSLSPNEI------GCTIADLIQG 146

Query: 261 GQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
                + KL+ GD I   NG  LE        A+FK
Sbjct: 147 QYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFK 182

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 76.1 bits (187), Expect = 1e-16
 Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
             +  +       +G  + GG+++     G  +  ++  GQ A +++L+  D I  ING 
Sbjct: 20  ILIELKVEKK--PMGVIVCGGKNNHVTT-GCVITHVYPEGQVAADKRLKIFDHICDINGT 76

Query: 282 PL--ENKTHAEAIAMFKDIFPQSSKLS 306
           P+   + T  +   +F   + ++  L+
Sbjct: 77  PIHVGSMTTLKVHQLFHTTYEKAVTLT 103

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 70.3 bits (172), Expect = 1e-14
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 9   RVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
            ++K    ELG+ +   + G       I+ +  G     D +   GD + K N   L+GL
Sbjct: 118 DLMKKAGKELGLSLSPNEIGC-----TIADLIQGQYPEIDSKLQRGDIITKFNGDALEGL 172

Query: 69  TIQEAREALNNKDSHVEIVICR 90
             Q         +  V + + R
Sbjct: 173 PFQVCYALFKGANGKVSMEVTR 194

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 12/99 (12%), Positives = 32/99 (32%), Gaps = 2/99 (2%)

Query: 14  DSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL--KGLTIQ 71
           +   +G+ +         +  +I+H+ P G +  D R  + D +  +N   +    +T  
Sbjct: 27  EKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTL 86

Query: 72  EAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKN 110
           +  +  +        +     D  +      +L      
Sbjct: 87  KVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGK 125

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 73.1 bits (180), Expect = 9e-17
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
               +KGP     GF + G     KG LG +++ + + G  AE   L  GD ++ +NG  
Sbjct: 6   LCCLEKGP--NGYGFHLHGE----KGKLGQYIRLV-EPGSPAEKAGLLAGDRLVEVNGEN 58

Query: 283 LENKTHAEAIAMFK 296
           +E +TH + ++  +
Sbjct: 59  VEKETHQQVVSRIR 72

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
           ++   N  G ++    G        I  +EPG    + G    GD L++VN + ++  T
Sbjct: 8  CLEKGPNGYGFHLH---GEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKET 63

Query: 70 IQEAREALNNKDSHVEIVICRNPDD 94
           Q+    +    + V +++     D
Sbjct: 64 HQQVVSRIRAALNAVRLLVVDPETD 88

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 72.4 bits (178), Expect = 2e-16
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
           S+  +   K      LG +I     +      I V  I + G A  +  +  GDE+  +N
Sbjct: 4   SVKIIRLVKNRE--PLGATIKKDEQTG----AIIVARIMRGGAADRSGLIHVGDELREVN 57

Query: 280 GVPLENKTHAEAIAMFKD 297
           G+P+E+K   E I +   
Sbjct: 58  GIPVEDKRPEEIIQILAQ 75

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 65.1 bits (159), Expect = 7e-14
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 6  KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
          K+ R+VK+    LG  I+           +++ I  GGA  R G  HVGDEL +VN   +
Sbjct: 6  KIIRLVKNREP-LGATIK---KDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPV 61

Query: 66 KGLTIQEAREALNNKDSHVEIVICRNPDDA 95
          +    +E  + L      +   I     + 
Sbjct: 62 EDKRPEEIIQILAQSQGAITFKIIPGSKEE 91

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 72.5 bits (178), Expect = 3e-16
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
           ++  V  +K      LG ++    D       + +  I + G A ++  L EGDE++ IN
Sbjct: 25  TVKIVRIEKARDI-PLGATVRNEMD------SVIISRIVKGGAAEKSGLLHEGDEVLEIN 77

Query: 280 GVPLENKTHAEAIAMFKD 297
           G+ +  K   E   +  D
Sbjct: 78  GIEIRGKDVNEVFDLLSD 95

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 67.5 bits (165), Expect = 2e-14
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 2   EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
            +  K+ R+ K     LG  +  +         +IS I  GGA  + G  H GDE++++N
Sbjct: 23  GETVKIVRIEKARDIPLGATVRNEMD-----SVIISRIVKGGAAEKSGLLHEGDEVLEIN 77

Query: 62  DKRLKGLTIQEAREALNNKDSHVEIVICRNPDDA 95
              ++G  + E  + L++    +  V+  +   +
Sbjct: 78  GIEIRGKDVNEVFDLLSDMHGTLTFVLIPSSGPS 111

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 70.2 bits (172), Expect = 1e-15
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 10/74 (13%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
           ++ F    G   LGF++       +GN  + V  +     +A     REGD I++I  V 
Sbjct: 26  SIRFTAEEG--DLGFTL-------RGNAPVQVHFLDPYC-SASVAGAREGDYIVSIQLVD 75

Query: 283 LENKTHAEAIAMFK 296
            +  T +E + + K
Sbjct: 76  CKWLTLSEVMKLLK 89

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 20 IYIERQDGGAHFS-----PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAR 74
          I    ++G   F+     P  +  ++P  +    G    GD ++ +     K LT+ E  
Sbjct: 27 IRFTAEEGDLGFTLRGNAPVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVM 85

Query: 75 EALNN 79
          + L +
Sbjct: 86 KLLKS 90

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 69.7 bits (171), Expect = 2e-15
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
             T +KGP     GF++   +  P    G F++++      AE   LR  D I+ +NGV 
Sbjct: 12  LCTMKKGP--SGYGFNLHSDKSKP----GQFIRSVDPDS-PAEASGLRAQDRIVEVNGVC 64

Query: 283 LENKTHAEAIAMFK 296
           +E K H + ++  +
Sbjct: 65  MEGKQHGDVVSAIR 78

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 11/86 (12%), Positives = 27/86 (31%), Gaps = 4/86 (4%)

Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
           +K   +  G  +             I  ++P       G     D +++VN   ++G  
Sbjct: 14 TMKKGPSGYGFNLH---SDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69

Query: 70 IQEAREALNNKDSHVEIVICRNPDDA 95
            +   A+       ++++     D 
Sbjct: 70 HGDVVSAIRAGGDETKLLVVDRETDE 95

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 69.4 bits (170), Expect = 2e-15
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 220 SMFTVTFQKGPGQ-KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
           S   ++  + PG+    GF+I           GIFV ++ ++G  AE  +L+  DEIIAI
Sbjct: 3   SDMRISINQTPGKSLDFGFTIKWDIP------GIFVASV-EAGSPAEFSQLQVDDEIIAI 55

Query: 279 NGVPLENKTHAEAIAMFK 296
           N          E      
Sbjct: 56  NNTKFSYNDSKEWEEAMA 73

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 12/94 (12%)

Query: 4  QFKVFRVV----KDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
          QF   R+        S + G  I+    G       ++ +E G       +  V DE+I 
Sbjct: 1  QFSDMRISINQTPGKSLDFGFTIKWDIPGI-----FVASVEAGSPAEF-SQLQVDDEIIA 54

Query: 60 VNDKRLKGLTIQEAREALNN--KDSHVEIVICRN 91
          +N+ +      +E  EA+    +  H+ + + R 
Sbjct: 55 INNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRY 88

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 69.0 bits (169), Expect = 3e-15
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 7/77 (9%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
             V   K     SLG +I             F+K I   G     + +  GD I +ING 
Sbjct: 7   KEVNVYKSED--SLGLTITDNGVGY-----AFIKRIKDGGVIDSVKTICVGDHIESINGE 59

Query: 282 PLENKTHAEAIAMFKDI 298
            +    H +     K++
Sbjct: 60  NIVGWRHYDVAKKLKEL 76

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 60.5 bits (147), Expect = 4e-12
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 5/85 (5%)

Query: 4  QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
            K   V K + + LG+ I     G  F    I  I+ GG I       VGD +  +N +
Sbjct: 5  IEKEVNVYKSEDS-LGLTITDNGVGYAF----IKRIKDGGVIDSVKTICVGDHIESINGE 59

Query: 64 RLKGLTIQEAREALNNKDSHVEIVI 88
           + G    +  + L          +
Sbjct: 60 NIVGWRHYDVAKKLKELKKEELFTM 84

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 68.9 bits (169), Expect = 4e-15
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            +  +KGP  +  GF +   +    G  G F+  +      A+   ++ GD ++A+ G  
Sbjct: 6   CLHLEKGP--QGFGFLLREEK-GLDGRPGQFLWEVDPGL-PAKKAGMQAGDRLVAVAGES 61

Query: 283 LENKTHAEAIAMFK 296
           +E   H E ++  +
Sbjct: 62  VEGLGHEETVSRIQ 75

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 1/85 (1%)

Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
           ++      G  +  + G        +  ++PG    + G    GD L+ V  + ++GL 
Sbjct: 8  HLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLG 66

Query: 70 IQEAREALNNKDSHVEIVICRNPDD 94
           +E    +  + S V + +     D
Sbjct: 67 HEETVSRIQGQGSCVSLTVVDPEAD 91

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 68.2 bits (167), Expect = 7e-15
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 215 KSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDE 274
              S    TV   K    +  GF I         +L + V  +  +G +A   KL  GD+
Sbjct: 3   SGSSGVRHTVKIDKDTLLQDYGFHI-------SESLPLTVVAVT-AGGSAHG-KLFPGDQ 53

Query: 275 IIAINGVPLENKTHAEAIAMFK 296
           I+ +N  P E+ +   A+ + +
Sbjct: 54  ILQMNNEPAEDLSWERAVDILR 75

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 14/86 (16%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 20 IYIERQDGGAHF-------SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQE 72
          + I++      +        P  +  +  GG+    G+   GD+++++N++  + L+ + 
Sbjct: 12 VKIDKDTLLQDYGFHISESLPLTVVAVTAGGS--AHGKLFPGDQILQMNNEPAEDLSWER 69

Query: 73 AREALNNKDSHVEIVICRNPDDAKSA 98
          A + L   +  + I + R      S+
Sbjct: 70 AVDILREAEDSLSITVVRCTSSGPSS 95

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 67.7 bits (166), Expect = 7e-15
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
               +KGP  +  GF++   +  P    G +++++      A    LR  D +I +NG  
Sbjct: 7   LCHLRKGP--QGYGFNLHSDKSRP----GQYIRSVDPGS-PAARSGLRAQDRLIEVNGQN 59

Query: 283 LENKTHAEAIAMFK 296
           +E   HAE +A  K
Sbjct: 60  VEGLRHAEVVASIK 73

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 43.0 bits (102), Expect = 5e-06
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 4/81 (4%)

Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
           ++      G  +             I  ++PG    R G     D LI+VN + ++GL 
Sbjct: 9  HLRKGPQGYGFNLH---SDKSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLR 64

Query: 70 IQEAREALNNKDSHVEIVICR 90
            E   ++  ++    +++  
Sbjct: 65 HAEVVASIKAREDEARLLVVG 85

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 68.2 bits (167), Expect = 8e-15
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
                K  G  S GFS+       +G  G+++  I   G  A    +   D +I +NG  
Sbjct: 11  LCYLVKEGG--SYGFSLKTV----QGKKGVYMTDITPQG-VAMRAGVLADDHLIEVNGEN 63

Query: 283 LENKTHAEAIAMFK 296
           +E+ +H E +   K
Sbjct: 64  VEDASHEEVVEKVK 77

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 9/83 (10%)

Query: 20 IYIERQDGGAHFS--------PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQ 71
           Y+ ++ G   FS           ++ I P G   R G     D LI+VN + ++  + +
Sbjct: 12 CYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGV-LADDHLIEVNGENVEDASHE 70

Query: 72 EAREALNNKDSHVEIVICRNPDD 94
          E  E +    S V  ++     D
Sbjct: 71 EVVEKVKKSGSRVMFLLVDKETD 93

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 67.0 bits (164), Expect = 1e-14
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            V FQK   +  +G ++     +        V  I   G       L  GDEI  ING+ 
Sbjct: 4   LVQFQKNTDE-PMGITLKMNELN-----HCIVARIMHGGMIHRQGTLHVGDEIREINGIS 57

Query: 283 LENKTHAEAIAMFKDI 298
           + N+T  +   M +++
Sbjct: 58  VANQTVEQLQKMLREM 73

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 62.4 bits (152), Expect = 7e-13
 Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 6  KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
          ++ +  K+    +GI ++  +        +++ I  GG IHR G  HVGDE+ ++N   +
Sbjct: 3  RLVQFQKNTDEPMGITLKMNELN----HCIVARIMHGGMIHRQGTLHVGDEIREINGISV 58

Query: 66 KGLTIQEAREALNNKDSHVEIVI 88
             T+++ ++ L      +   I
Sbjct: 59 ANQTVEQLQKMLREMRGSITFKI 81

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 67.0 bits (164), Expect = 2e-14
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 6/75 (8%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            + F+K   +  +G  +              V  I   G       L  GDEI+ ING  
Sbjct: 15  LIQFEKVTEE-PMGICLKLNEKQS-----CTVARILHGGMIHRQGSLHVGDEILEINGTN 68

Query: 283 LENKTHAEAIAMFKD 297
           + N +  +     K+
Sbjct: 69  VTNHSVDQLQKAMKE 83

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 18/91 (19%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 2  EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
              ++ +  K     +GI ++  +  +      ++ I  GG IHR G  HVGDE++++N
Sbjct: 10 GHMVRLIQFEKVTEEPMGICLKLNEKQSCT----VARILHGGMIHRQGSLHVGDEILEIN 65

Query: 62 DKRLKGLTIQEAREALNNKDSHVEIVICRNP 92
             +   ++ + ++A+      + + +  N 
Sbjct: 66 GTNVTNHSVDQLQKAMKETKGMISLKVIPNQ 96

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 66.3 bits (162), Expect = 4e-14
 Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 10/90 (11%)

Query: 207 SNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAEN 266
           S+ +       +     +T ++G      GF+I            + V+ +   G  AE 
Sbjct: 2   SSGSSGEGDPENGEKLQITIRRGKD--GFGFTICCDS-------PVRVQAVDSGG-PAER 51

Query: 267 EKLREGDEIIAINGVPLENKTHAEAIAMFK 296
             L++ D ++ +N  P+E+    E     +
Sbjct: 52  AGLQQLDTVLQLNERPVEHWKCVELAHEIR 81

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 20 IYIERQDGGAHFS-----PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAR 74
          I I R   G  F+     P  +  ++ GG   R G     D ++++N++ ++     E  
Sbjct: 19 ITIRRGKDGFGFTICCDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELA 77

Query: 75 EALNNKDSHVEIVICRNP 92
            + +  S + +++ R  
Sbjct: 78 HEIRSCPSEIILLVWRVS 95

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 66.3 bits (162), Expect = 4e-14
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 223 TVTFQKGPGQKSLGFSIVGGR----DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
            VT +K   + + GF I   R    ++    +   +  I +    A    L+ GD +  I
Sbjct: 18  LVTVEKQDNE-TFGFEIQSYRPQNQNACSSEMFTLICKIQE-DSPAHCAGLQAGDVLANI 75

Query: 279 NGVPLENKTHAEAIAMFKD 297
           NGV  E  T+ + + + + 
Sbjct: 76  NGVSTEGFTYKQVVDLIRS 94

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 6   KVFRVVKDDSNELGIYI-----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
           K+  V K D+   G  I     + Q+  +     LI  I+     H  G    GD L  +
Sbjct: 17  KLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANI 75

Query: 61  NDKRLKGLTIQEAREALNNKDSHVEIVI 88
           N    +G T ++  + + +  + + I  
Sbjct: 76  NGVSTEGFTYKQVVDLIRSSGNLLTIET 103

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 65.7 bits (161), Expect = 4e-14
 Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 10/74 (13%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
           +V   +G      GF++ G            +  + +    A+   LR GD+I+A+N + 
Sbjct: 5   SVEVARGRA--GYGFTLSGQA-------PCVLSCVMRGS-PADFVGLRAGDQILAVNEIN 54

Query: 283 LENKTHAEAIAMFK 296
           ++  +H + + +  
Sbjct: 55  VKKASHEDVVKLIG 68

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 20 IYIERQDGGAHFS-----PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAR 74
          + + R   G  F+     P ++S +  G      G    GD+++ VN+  +K  + ++  
Sbjct: 6  VEVARGRAGYGFTLSGQAPCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVV 64

Query: 75 EALNNKDSHVEIVICRNP 92
          + +      + +VI    
Sbjct: 65 KLIGKCSGVLHMVIAEGV 82

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 65.8 bits (161), Expect = 5e-14
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            V  +KG      GF +  G +      G  +K I      AE   L+  D ++A+NG  
Sbjct: 8   VVVIKKGS--NGYGFYLRAGPEQK----GQIIKDIEPGS-PAEAAGLKNNDLVVAVNGKS 60

Query: 283 LENKTHAEAIAMFK 296
           +E   H   + M +
Sbjct: 61  VEALDHDGVVEMIR 74

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
          V+K  SN  G Y+     G      +I  IEPG      G     D ++ VN K ++ L 
Sbjct: 10 VIKKGSNGYGFYLR---AGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALD 65

Query: 70 IQEAREALNNKDSHVEIVICRNPDD 94
               E +        +++     +
Sbjct: 66 HDGVVEMIRKGGDQTTLLVLDKELE 90

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 65.9 bits (161), Expect = 5e-14
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            V  +KG      GF +  G +      G  +K I   G  AE   L+  D ++A+NG  
Sbjct: 9   VVVIKKGS--NGYGFYLRAGPEQK----GQIIKDIEP-GSPAEAAGLKNNDLVVAVNGKS 61

Query: 283 LENKTHAEAIAMFKD 297
           +E   H   + M + 
Sbjct: 62  VEALDHDGVVEMIRK 76

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
          V+K  SN  G Y+     G      +I  IEPG      G     D ++ VN K ++ L 
Sbjct: 11 VIKKGSNGYGFYLR---AGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALD 66

Query: 70 IQEAREALNNKDSHVEIVICRNPDD 94
               E +        +++     +
Sbjct: 67 HDGVVEMIRKGGDQTTLLVLDKEAE 91

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 66.0 bits (161), Expect = 7e-14
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 11/78 (14%)

Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
           + T+   KGP  K  GF+I           G  VK I  S        L++GD I  I  
Sbjct: 13  LVTIPLIKGP--KGFGFAIADS------PTGQKVKMILDSQWCQ---GLQKGDIIKEIYH 61

Query: 281 VPLENKTHAEAIAMFKDI 298
             ++N TH + + + K  
Sbjct: 62  QNVQNLTHLQVVEVLKQF 79

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 66.4 bits (162), Expect = 7e-14
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
             T +KGP     GF++   +  P    G F++++      AE   LR  D I+ +NGV 
Sbjct: 12  LCTMKKGP--SGYGFNLHSDKSKP----GQFIRSV-DPDSPAEASGLRAQDRIVEVNGVC 64

Query: 283 LENKTHAEAIAMFK 296
           +E K H + ++  +
Sbjct: 65  MEGKQHGDVVSAIR 78

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 9/84 (10%)

Query: 20 IYIERQDGGAHFS--------PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQ 71
            +++   G  F+           I  ++P       G     D +++VN   ++G    
Sbjct: 13 CTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHG 71

Query: 72 EAREALNNKDSHVEIVICRNPDDA 95
          +   A+       ++++     D 
Sbjct: 72 DVVSAIRAGGDETKLLVVDRETDE 95

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 65.0 bits (159), Expect = 8e-14
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
                KG      GF +   R  P    G F+K + + G  A+   L + D II +NGV 
Sbjct: 6   LCRLAKGEN--GYGFHLNAIRGLP----GSFIKEVQKGG-PADLAGLEDEDVIIEVNGVN 58

Query: 283 LENKTHAEAIAMFK 296
           + ++ + + +   +
Sbjct: 59  VLDEPYEKVVDRIQ 72

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 4/85 (4%)

Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
           +    N  G ++    G        I  ++ GG     G     D +I+VN   +    
Sbjct: 8  RLAKGENGYGFHLNAIRGL---PGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEP 63

Query: 70 IQEAREALNNKDSHVEIVICRNPDD 94
           ++  + + +   +V +++C     
Sbjct: 64 YEKVVDRIQSSGKNVTLLVCGKKAQ 88

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 64.7 bits (158), Expect = 1e-13
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
           S+    +T  +G      GF+I            + V+ +   G  AE   L++ D ++ 
Sbjct: 1   SMRYRQITIPRGKD--GFGFTICCDS-------PVRVQAVDSGG-PAERAGLQQLDTVLQ 50

Query: 278 INGVPLENKTHAEAIAMFK 296
           +N  P+E+    E     +
Sbjct: 51  LNERPVEHWKCVELAHEIR 69

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 20 IYIERQDGGAHFS-----PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAR 74
          I I R   G  F+     P  +  ++ GG   R G     D ++++N++ ++     E  
Sbjct: 7  ITIPRGKDGFGFTICCDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELA 65

Query: 75 EALNNKDSHVEIVICRNPDDAKS 97
            + +  S + +++ R     K 
Sbjct: 66 HEIRSCPSEIILLVWRMVPQVKP 88

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 64.7 bits (158), Expect = 1e-13
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 223 TVTFQKGPGQKSLGFSIVGGR----DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
            +T +KG  Q + GF I        +  +  +  FV  +      A+   L  GD I ++
Sbjct: 7   VLTLEKGDNQ-TFGFEIQTYGLHHREEQRVEMVTFVARV-HESSPAQLAGLTPGDTIASV 64

Query: 279 NGVPLENKTHAEAIAMFK 296
           NG+ +E   H E + + K
Sbjct: 65  NGLNVEGIRHREIVDIIK 82

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 6/92 (6%)

Query: 4  QFKVFRVVKDDSNELGIYI-----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELI 58
          Q KV  + K D+   G  I       ++         ++ +         G    GD + 
Sbjct: 4  QRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIA 62

Query: 59 KVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
           VN   ++G+  +E  + +    + + +    
Sbjct: 63 SVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 69.1 bits (168), Expect = 2e-13
 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            V F+KG    S+G  + GG D      GIFV  +      A  E L EGD+I+ +N V 
Sbjct: 12  LVKFRKG---DSVGLRLAGGNDV-----GIFVAGV-LEDSPAAKEGLEEGDQILRVNNVD 62

Query: 283 LENKTHAEAIAMFKDI 298
             N    EA+    D+
Sbjct: 63  FTNIIREEAVLFLLDL 78

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 44.4 bits (104), Expect = 3e-05
 Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 9  RVVK-DDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
          ++VK    + +G+ +    GG       ++ +       ++G    GD++++VN+     
Sbjct: 11 KLVKFRKGDSVGLRLA---GGND-VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTN 65

Query: 68 LTIQEAREALNNKDSHVEIVICRNPD 93
          +  +EA   L +     E+ I     
Sbjct: 66 IIREEAVLFLLDLPKGEEVTILAQKK 91

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 63.2 bits (154), Expect = 5e-13
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 223 TVTFQKGPGQKSLGFSIVGGR----DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
            +        K  GFS+   R    DS    +   V ++ + G  A+   LR GD I  I
Sbjct: 5   PIVIHSSG--KKYGFSLRAIRVYMGDSDVYTVHHVVWSV-EDGSPAQEAGLRAGDLITHI 61

Query: 279 NGVPLENKTHAEAIAMFK 296
           NG  +    H + + +  
Sbjct: 62  NGESVLGLVHMDVVELLL 79

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 42.8 bits (101), Expect = 8e-06
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 1/79 (1%)

Query: 19 GIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALN 78
           I +   D   +   +++  +E G      G    GD +  +N + + GL   +  E L 
Sbjct: 21 AIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLL 79

Query: 79 NKDSHVEIVICRNPDDAKS 97
             + + +      +   S
Sbjct: 80 KSGNKISLRTTALENTETS 98

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 62.3 bits (152), Expect = 7e-13
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 10/74 (13%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            V  QK       GF++ G R        + V+++   G AA    ++EGD II +NG  
Sbjct: 11  CVIIQKDQ--HGFGFTVSGDR-------IVLVQSVRPGG-AAMKAGVKEGDRIIKVNGTM 60

Query: 283 LENKTHAEAIAMFK 296
           + N +H E + + K
Sbjct: 61  VTNSSHLEVVKLIK 74

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 20 IYIERQDGGAHFS-----PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAR 74
          + I++   G  F+       L+  + PGGA  + G    GD +IKVN   +   +  E  
Sbjct: 12 VIIQKDQHGFGFTVSGDRIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVV 70

Query: 75 EALNNKDSHVEIVICRNPDDAKSA 98
          + + +  ++V + +  +     S 
Sbjct: 71 KLIKS-GAYVALTLLGSSSGPSSG 93

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Length = 195

 Score = 65.0 bits (157), Expect = 8e-13
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)

Query: 233 KSLGFSIVGGRDSPK-----GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKT 287
             LGFSI GG           + GIFV  +   G A++   L+ GD+II  NG    N  
Sbjct: 2   PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIE 59

Query: 288 HAEAIAMFKD 297
           H +A+++ K 
Sbjct: 60  HGQAVSLLKT 69

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Length = 195

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 33  PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNP 92
              ++ ++P G          GD++I+ N      +   +A   L    + VE++I R  
Sbjct: 25  GIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV 82

Query: 93  DDAKSATNCDNLQPNP 108
            +         ++ + 
Sbjct: 83  GNGAKQEIRVRVEKDG 98

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 67.2 bits (163), Expect = 1e-12
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
           SM  V F+KG    S+G  + GG D      GIFV  +      A  E L EGD+I+ +N
Sbjct: 1   SMKLVKFRKG---DSVGLRLAGGNDV-----GIFVAGV-LEDSPAAKEGLEEGDQILRVN 51

Query: 280 GVPLENKTHAEAIAMFKDI 298
            V   N    EA+    D+
Sbjct: 52  NVDFTNIIREEAVLFLLDL 70

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 44.1 bits (103), Expect = 4e-05
 Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 9  RVVK-DDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
          ++VK    + +G+ +    GG       ++ +       ++G    GD++++VN+     
Sbjct: 3  KLVKFRKGDSVGLRLA---GGND-VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTN 57

Query: 68 LTIQEAREALNNKDSHVEIVICRNPD 93
          +  +EA   L +     E+ I     
Sbjct: 58 IIREEAVLFLLDLPKGEEVTILAQKK 83

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 62.5 bits (152), Expect = 1e-12
 Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 13/97 (13%)

Query: 201 AATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQS 260
            ++ ++  A+   P+            K  GQ + GF +   +D+     G  ++ I + 
Sbjct: 1   GSSGSSGMASTFNPR-------ECKLSKQEGQ-NYGFFLRIEKDTD----GHLIRVI-EE 47

Query: 261 GQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD 297
           G  AE   L +GD ++ INGV ++ + HA+ + + + 
Sbjct: 48  GSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRK 84

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 9   RVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
           ++ K +    G ++           +LI  IE G    + G    GD ++++N   +   
Sbjct: 18  KLSKQEGQNYGFFLR---IEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKE 73

Query: 69  TIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQP 106
              +  E +    + V +++       K+  N  +L+ 
Sbjct: 74  EHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLKE 111

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 62.9 bits (153), Expect = 3e-12
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            V   K      +G  +    +      GIFV+ +  +   A    LR GD+++ ING  
Sbjct: 7   EVILCKDQDG-KIGLRLKSIDN------GIFVQLVQANS-PASLVGLRFGDQVLQINGEN 58

Query: 283 LENKTHAEAIAMFKDIFPQSSKL 305
               +  +A  + K  F +   +
Sbjct: 59  CAGWSSDKAHKVLKQAFGEKITM 81

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 56.4 bits (136), Expect = 5e-10
 Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
          + KD   ++G+ ++  D G       +  ++        G    GD+++++N +   G +
Sbjct: 10 LCKDQDGKIGLRLKSIDNGI-----FVQLVQANSPASLVG-LRFGDQVLQINGENCAGWS 63

Query: 70 IQEAREALNN-KDSHVEIVICRNP 92
            +A + L       + + I   P
Sbjct: 64 SDKAHKVLKQAFGEKITMTIRDRP 87

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 1/70 (1%)

Query: 20  IYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN 79
                   G  F    I+ I    +  R+G       + ++N + + GL   +  + L+ 
Sbjct: 95  HKDSTGHVGFIFKNGKITSIVKDSSAARNGL-LTEHNICEINGQNVIGLKDSQIADILST 153

Query: 80  KDSHVEIVIC 89
             + V I I 
Sbjct: 154 SGTVVTITIM 163

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 13/77 (16%), Positives = 21/77 (27%), Gaps = 12/77 (15%)

Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
             T+T  K      +GF    G+            T      +A    L     I  ING
Sbjct: 89  ERTITMHKDST-GHVGFIFKNGKI-----------TSIVKDSSAARNGLLTEHNICEING 136

Query: 281 VPLENKTHAEAIAMFKD 297
             +     ++   +   
Sbjct: 137 QNVIGLKDSQIADILST 153

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 61.2 bits (148), Expect = 4e-12
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 219 LSMFTVTFQKGPG-QKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
               ++  +K      + GFS+    +   G   ++V ++ ++G  A  + L+ GDEI+ 
Sbjct: 14  KVTQSIHIEKSDTAADTYGFSLSSVEE--DGIRRLYVNSVKETG-LASKKGLKAGDEILE 70

Query: 278 INGVPLENKTHAEAIAMFK 296
           IN    +    +       
Sbjct: 71  INNRAADALNSSMLKDFLS 89

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 12/96 (12%), Positives = 35/96 (36%), Gaps = 4/96 (4%)

Query: 1   MEKQFKVFRVVKDDSNE--LGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELI 58
             K  +   + K D+     G  +   +         ++ ++  G   + G    GDE++
Sbjct: 12  CPKVTQSIHIEKSDTAADTYGFSLSSVEE-DGIRRLYVNSVKETGLASKKG-LKAGDEIL 69

Query: 59  KVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDD 94
           ++N++    L     ++ L+     + +      ++
Sbjct: 70  EINNRAADALNSSMLKDFLSQPSLGLLVRTYPELEE 105

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 61.0 bits (148), Expect = 4e-12
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 10/74 (13%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            + F    G   LGF++ G          + V  +     +A     +EGD I++I GV 
Sbjct: 18  GIHFTVEEG--DLGFTLRGNT-------PVQVHFLDPHC-SASLAGAKEGDYIVSIQGVD 67

Query: 283 LENKTHAEAIAMFK 296
            +  T +E + + K
Sbjct: 68  CKWLTVSEVMKLLK 81

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 43.6 bits (103), Expect = 5e-06
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 20  IYIERQDGGAHF-----SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAR 74
           I+   ++G   F     +P  +  ++P  +    G    GD ++ +     K LT+ E  
Sbjct: 19  IHFTVEEGDLGFTLRGNTPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVM 77

Query: 75  EAL-NNKDSHVEIVICRNPDDAKSATN 100
           + L +     VE+ +    D   S  N
Sbjct: 78  KLLKSFGGEEVEMKVVSLLDSTSSMHN 104

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 60.5 bits (147), Expect = 6e-12
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
                K  GQ + GF +   +D+     G  ++ I + G  AE   L +GD ++ INGV 
Sbjct: 4   ESKLSKQEGQ-NYGFFLRIEKDTD----GHLIRVI-EEGSPAEKAGLLDGDRVLRINGVF 57

Query: 283 LENKTHAEAIAMFKD 297
           ++ + HA+ + + + 
Sbjct: 58  VDKEEHAQVVELVRK 72

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 4/104 (3%)

Query: 9   RVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
           ++ K +    G ++           +LI  IE G    + G    GD ++++N   +   
Sbjct: 6   KLSKQEGQNYGFFLR---IEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKE 61

Query: 69  TIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLP 112
              +  E +    + V +++       K+  N  +L+   +   
Sbjct: 62  EHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLKELDQEAK 105

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 59.8 bits (145), Expect = 6e-12
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 2  EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
              ++  + K     LG+    + G       +I+ I  GG + + G  HVGD + +VN
Sbjct: 4  GSSGRMVGIRKTAGEHLGVTFRVEGG-----ELVIARILHGGMVAQQGLLHVGDIIKEVN 58

Query: 62 DKRLKGLTIQEAREALNNKDSHVEIVICRNPDDA 95
           + + G   +  +E L N    V + I   P   
Sbjct: 59 GQPV-GSDPRALQELLRNASGSVILKILSGPSSG 91

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 8/78 (10%)

Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
           S   V  +K  G+  LG +             + +  I   G  A+   L  GD I  +N
Sbjct: 6   SGRMVGIRKTAGE-HLGVTFRVEGG------ELVIARILHGGMVAQQGLLHVGDIIKEVN 58

Query: 280 GVPLENKTHAEAIAMFKD 297
           G P+ +        + ++
Sbjct: 59  GQPVGS-DPRALQELLRN 75

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 60.2 bits (146), Expect = 8e-12
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 11/83 (13%)

Query: 223 TVTFQKGPGQKSLGFSIVGGR---------DSPKGNLGIFVKTIFQSGQAAENEKLREGD 273
           TV  QK   +   GF + G +          +P      +++++   G  A    LR GD
Sbjct: 10  TVLLQKKDSE-GFGFVLRGAKAQTPIEEFTPTPAFPALQYLESV-DEGGVAWRAGLRMGD 67

Query: 274 EIIAINGVPLENKTHAEAIAMFK 296
            +I +NG  +    H + + M +
Sbjct: 68  FLIEVNGQNVVKVGHRQVVNMIR 90

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 14/97 (14%)

Query: 10  VVKDDSNELGIYI----------ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
           + K DS   G  +          E     A  +   +  ++ GG   R G   +GD LI+
Sbjct: 13  LQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIE 71

Query: 60  VNDKRLKGLTIQEAREALNNKDSHVEIVI---CRNPD 93
           VN + +  +  ++    +    + + + +    R+PD
Sbjct: 72  VNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPD 108

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 60.8 bits (147), Expect = 8e-12
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 17/116 (14%)

Query: 190 QSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGR------ 243
            S   H+ S     P  S +     +       TV  QK   +   GF + G +      
Sbjct: 3   SSHHHHHHSQDPLVPRGSGSDYIIKE------KTVLLQKKDSE-GFGFVLRGAKAQTPIE 55

Query: 244 ---DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
               +P      +++++   G  A    LR GD +I +NG  +    H + + M +
Sbjct: 56  EFTPTPAFPALQYLESV-DEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIR 110

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 10  VVKDDSNELGIYI----------ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
           + K DS   G  +          E     A  +   +  ++ GG   R G   +GD LI+
Sbjct: 33  LQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIE 91

Query: 60  VNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDD 94
           VN + +  +  ++    +    + + + +      
Sbjct: 92  VNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRH 126

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 61.7 bits (149), Expect = 2e-11
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
             T +KGP     GF++   +  P    G F++++      AE   LR  D I+ +NGV 
Sbjct: 12  LCTMKKGP--SGYGFNLHSDKSKP----GQFIRSVDPDS-PAEASGLRAQDRIVEVNGVC 64

Query: 283 LENKTHAEAIAMFK 296
           +E K H + ++  +
Sbjct: 65  MEGKQHGDVVSAIR 78

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 4/131 (3%)

Query: 10  VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
            +K   +  G  +             I  ++P       G     D +++VN   ++G  
Sbjct: 14  TMKKGPSGYGFNLH---SDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69

Query: 70  IQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKS 129
             +   A+       ++++     D               N P      N   +    + 
Sbjct: 70  HGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSRE 129

Query: 130 LMPERQVSMPE 140
            + E  +  P 
Sbjct: 130 ALAEAALESPR 140

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 58.1 bits (140), Expect = 3e-11
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 216 SLSLSMFTVTFQKGPG-QKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDE 274
           ++     ++  +K      + GFS+    +   G   ++V ++ ++G  A  + L+ GDE
Sbjct: 2   AMGKVTHSIHIEKSDTAADTYGFSLSSVEED--GIRRLYVNSVKETG-LASKKGLKAGDE 58

Query: 275 IIAINGVPLENKTHAEAIAMFK 296
           I+ IN    +    +       
Sbjct: 59  ILEINNRAADALNSSMLKDFLS 80

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 40.3 bits (94), Expect = 5e-05
 Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 1  MEKQFKVFRVVKDDSNE--LGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELI 58
          M K      + K D+     G  +   +         ++ ++  G   + G    GDE++
Sbjct: 3  MGKVTHSIHIEKSDTAADTYGFSLSSVEE-DGIRRLYVNSVKETGLASKKG-LKAGDEIL 60

Query: 59 KVNDKRLKGLTIQEAREALNNK 80
          ++N++    L     ++ L+  
Sbjct: 61 EINNRAADALNSSMLKDFLSQP 82

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 58.4 bits (141), Expect = 5e-11
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 28/99 (28%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSP-------------------------KGNLGIFVKTI 257
           TVT ++    +  GF++      P                         +    IFVK +
Sbjct: 11  TVTLKRTS--QGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQV 68

Query: 258 FQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
            + G  A    L  GD II +NG  +  KT+++ IA+ +
Sbjct: 69  KEGG-PAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQ 106

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 1/91 (1%)

Query: 8   FRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
            +    D        ++++         +  ++ GG     G    GD +IKVN + + G
Sbjct: 37  IQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIG 95

Query: 68  LTIQEAREALNNKDSHVEIVICRNPDDAKSA 98
            T  +    + N D+ +E+ +        S 
Sbjct: 96  KTYSQVIALIQNSDTTLELSVMPKDSGPSSG 126

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 12/75 (16%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
           T+T  K      +GF    G+          + +I +   +A    L     I  ING  
Sbjct: 7   TITMHKDSTG-HVGFIFKNGK----------ITSIVK-DSSAARNGLLTEHNICEINGQN 54

Query: 283 LENKTHAEAIAMFKD 297
           +     ++   +   
Sbjct: 55  VIGLKDSQIADILST 69

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 20 IYIERQDGGA---HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREA 76
          I + +   G     F    I+ I    +  R+G       + ++N + + GL   +  + 
Sbjct: 8  ITMHKDSTGHVGFIFKNGKITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADI 66

Query: 77 LNNKDSHVEIVI 88
          L+   + V I I
Sbjct: 67 LSTSGTVVTITI 78

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 59.6 bits (143), Expect = 2e-10
 Identities = 15/93 (16%), Positives = 39/93 (41%)

Query: 1   MEKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
             +  K  ++ K     LG+ +     G+     +++++  GG   R G+  +GD+++ +
Sbjct: 201 NSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSI 260

Query: 61  NDKRLKGLTIQEAREALNNKDSHVEIVICRNPD 93
           N   L GL +   +  +    +  ++ +     
Sbjct: 261 NGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSC 293

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 58.4 bits (140), Expect = 6e-10
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAI 292
           + LG  +V           + +  +   G AA + KL  GD+I++ING  L     A   
Sbjct: 216 EILGVVVVESGWGSILP-TVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQ 274

Query: 293 AMFKDIFPQS 302
            + K +  Q+
Sbjct: 275 GIIKGLKNQT 284

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 52.7 bits (125), Expect = 5e-08
 Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 12/76 (15%)

Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
              +  +       LGFS+  G           +      G  AE   +R G  II ING
Sbjct: 297 TTVLIKRPDLK-YQLGFSVQNG-----------IICSLMRGGIAERGGVRVGHRIIEING 344

Query: 281 VPLENKTHAEAIAMFK 296
             +    H + +    
Sbjct: 345 QSVVATAHEKIVQALS 360

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 50.7 bits (120), Expect = 2e-07
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 6   KVFRVVKDDSNELGIYIERQDGGAHFSPYL----ISHIEPGGAIHRDGRFHVGDELIKVN 61
           +V   +        + I+R D        +    I  +  GG   R G   VG  +I++N
Sbjct: 285 QVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRGGIAERGG-VRVGHRIIEIN 343

Query: 62  DKRLKGLTIQEAREALNNKDSHVEIVICR 90
            + +     ++  +AL+N    + +    
Sbjct: 344 GQSVVATAHEKIVQALSNSVGEIHMKTMP 372

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 26/103 (25%)

Query: 195 HNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFV 254
           H+  ++    N +   ++RP                 +  LGFS+  G           +
Sbjct: 1   HHHHHLETMGNVTTVLIRRPDL---------------RYQLGFSVQNG----------II 35

Query: 255 KTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD 297
            ++ + G  AE   +R G  II ING  +    H + + +  +
Sbjct: 36  CSLMR-GGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSN 77

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 22 IERQDG----GAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL 77
          I R D     G      +I  +  GG   R G   VG  +I++N + +     ++    L
Sbjct: 17 IRRPDLRYQLGFSVQNGIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHIL 75

Query: 78 NNKDSHVEIVI 88
          +N    + +  
Sbjct: 76 SNAVGEIHMKT 86

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 44.8 bits (105), Expect = 3e-06
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 6/97 (6%)

Query: 202 ATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSG 261
            +  +S    + P S++L    ++          GFS+     S      + VK + +  
Sbjct: 1   GSSGSSGVQDQLPYSVTL----ISMPATTE-CRRGFSVTVESASSNYATTVQVKEVNRMH 55

Query: 262 QAAENE-KLREGDEIIAINGVPLENKTHAEAIAMFKD 297
            +  N   +  GD I+ ING P+      E     K 
Sbjct: 56  ISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQ 92

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 40.6 bits (94), Expect = 7e-05
 Identities = 10/77 (12%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 18  LGIYIERQDGGAHFSPYL-ISHIEPGG-AIHRDGRFHVGDELIKVNDKRLKGLTIQEARE 75
            G  +  +   ++++  + +  +     + +     H GD ++++N   ++ L ++E  +
Sbjct: 29  RGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVED 88

Query: 76  ALNNKDSHVEIVICRNP 92
           A+      ++++I  +P
Sbjct: 89  AIKQTSQTLQLLIEHDP 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	306
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.97
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.97
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.96
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.95
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.95
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.92
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	99.92
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.91
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	99.83
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.8
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.78
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.77
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.76
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.75
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.75
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.74
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.74
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.74
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.74
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.73
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.73
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.73
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.73
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.73
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.73
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.73
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.73
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.73
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.72
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.72
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.72
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.72
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.72
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.72
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.72
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.72
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.72
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.72
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.71
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.71
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.71
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.71
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.71
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.71
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.71
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.71
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.7
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.7
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.7
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.7
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.7
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.7
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.7
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.69
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.69
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.69
2ego_A	96	General receptor for phosphoinositides 1- associat	99.69
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.69
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.69
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.69
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.69
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.69
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	99.69
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.69
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.69
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.69
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.69
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.69
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.68
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.68
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.68
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.68
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.68
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.68
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.68
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.68
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.68
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.68
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.67
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.67
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.67
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.67
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.67
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.67
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.67
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.67
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.67
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.67
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.67
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.67
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.67
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.67
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.66
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.66
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.66
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.66
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.66
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.66
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.65
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.65
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.65
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.65
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.65
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.65
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.65
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	99.65
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.65
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.65
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.64
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.64
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.64
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.64
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.64
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.64
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	99.64
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.64
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.64
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	99.64
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.63
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.63
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	99.63
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.63
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.62
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.62
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.62
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.62
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.62
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.62
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.62
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.62
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.62
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.62
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.62
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.62
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.62
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.61
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.61
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.61
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.61
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.61
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.61
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.61
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.61
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.61
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.61
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.61
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.61
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.61
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.6
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.6
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.6
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.6
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.6
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.6
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.6
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.6
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.6
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.6
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.59
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.59
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.59
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.59
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.59
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.59
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	99.59
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.59
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.59
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.59
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.59
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.59
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.59
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.58
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.58
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.58
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.58
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.58
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.58
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.58
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.58
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.58
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.58
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	99.35
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.57
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.57
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.57
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.57
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.57
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.57
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	99.57
2ego_A	96	General receptor for phosphoinositides 1- associat	99.57
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.57
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.57
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.56
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.56
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.56
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.56
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.56
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.56
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.56
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.56
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	99.56
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.55
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.55
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.55
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.55
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.55
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	99.55
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.55
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.55
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.55
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.54
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.54
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	99.54
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.54
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	99.54
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.54
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.54
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.54
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	99.53
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.53
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.53
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.53
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.53
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.53
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.53
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.53
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	99.53
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.53
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.53
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	99.53
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	99.52
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.52
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.52
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	99.52
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.51
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.51
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	99.51
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.51
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.51
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.51
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.51
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	99.51
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.51
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	99.51
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.5
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.5
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	99.5
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	99.5
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.5
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	99.5
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.5
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.49
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.49
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.49
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.49
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.48
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.48
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.48
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.48
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.48
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.48
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.48
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.48
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.47
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.47
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.47
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.47
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.47
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.47
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.46
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.46
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.46
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	99.46
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.46
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.46
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.45
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.45
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.45
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	99.45
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	99.45
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.45
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.44
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.44
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	99.44
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.44
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	99.43
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	99.43
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.43
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.42
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	99.42
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	99.42
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.42
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	99.42
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.42
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	99.42
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.42
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	99.42
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	99.41
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.41
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	99.11
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	99.4
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	99.4
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.39
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	99.39
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.39
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.38
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.37
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	99.37
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	99.37
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.36
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.35
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	99.35
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	99.35
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	99.35
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.34
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	99.33
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	99.33
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	99.33
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.33
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	99.33
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	99.32
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	99.3
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	99.3
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	99.29
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	99.26
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.26
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.26
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	99.25
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.24
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	99.12
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	99.1
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.99
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.95
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.92
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.9
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	98.9
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	98.85
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.83
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	98.81
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.78
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.77
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	98.71
3k50_A	403	Putative S41 protease; structural genomics, joint	98.65
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	98.65
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.64
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	98.61
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	98.6
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.6
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	98.57
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.56
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.55
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	98.54
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.53
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.53
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.53
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.52
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.52
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	98.48
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	98.47
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.47
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	98.45
4fgm_A	597	Aminopeptidase N family protein; structural genomi	98.44
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	98.38
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	98.29
3k50_A	403	Putative S41 protease; structural genomics, joint	98.25
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	98.22
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	98.2
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	98.19
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.18
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	98.13
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	98.1
4fgm_A	597	Aminopeptidase N family protein; structural genomi	98.05
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	97.98
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	97.97
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.82
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	97.61
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.55
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.27

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.97  E-value=3.8e-30  Score=213.37  Aligned_cols=177  Identities=32%  Similarity=0.540  Sum_probs=148.4

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCc---CCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAH---FSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALN   78 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~---~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~   78 (306)
                      +-+++.|+|.|. +++|||+|.++.....   ..|+||..|.|+|||+++|+|+.||+|++|||+++.++++.++..+++
T Consensus         3 ~~~~~~v~l~~~-~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~   81 (196)
T 3gsl_A            3 SMEYEEITLERG-NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK   81 (196)
T ss_dssp             CEEEEEEEEECB-TTBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CcEEEEEEEEEC-CCCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            457899999995 5789999999865421   368999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCCCCCcccCcCCCCCCCCCCCCCCchhhhhcccccccccCCCCCCCChhhhhcCccceeeecccCccc
Q psy8436          79 NKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEK  158 (306)
Q Consensus        79 ~~~~~v~L~v~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (306)
                      .++..+.|+|.|.....                                                               
T Consensus        82 ~~g~~v~l~v~r~~~~~---------------------------------------------------------------   98 (196)
T 3gsl_A           82 EAGSIVRLYVMRRKPPA---------------------------------------------------------------   98 (196)
T ss_dssp             TSCSEEEEEEEEECCCC---------------------------------------------------------------
T ss_pred             hCCCcEEEEEEecCCCc---------------------------------------------------------------
Confidence            99999999998853110                                                               


Q ss_pred             ccccccccccccccccccceecccCCCCCCcCccccCCCCCCCCCCCCCCCCcCCCCCCccceEEEEEEeCCCCCcccEE
Q psy8436         159 SQTSNCSKIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFS  238 (306)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k~~~~~~lG~~  238 (306)
                                                                                  ...+++.+.+..  .+|||+
T Consensus        99 ------------------------------------------------------------~~~~~v~l~~~~--~~lG~~  116 (196)
T 3gsl_A           99 ------------------------------------------------------------EKVMEIKLIKGP--KGLGFS  116 (196)
T ss_dssp             ------------------------------------------------------------EEEEEEEEEEBT--TBSCEE
T ss_pred             ------------------------------------------------------------cccEEEEEecCC--CCceEE
Confidence                                                                        123457777775  589999


Q ss_pred             EEcCCCCCC--CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436         239 IVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL  305 (306)
Q Consensus       239 l~gg~~~~~--~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l  305 (306)
                      +.++.+...  ...|+||..|.++|+|+++|+|++||+|++|||+++.+++|++++.+|++. ++.+.|
T Consensus       117 ~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~-~~~v~l  184 (196)
T 3gsl_A          117 IAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT-YDVVYL  184 (196)
T ss_dssp             EEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSC-CEEEEE
T ss_pred             EEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcC-CCeEEE
Confidence            988765432  135899999999999999999999999999999999999999999999875 444443

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.97  E-value=1.7e-29  Score=211.25  Aligned_cols=170  Identities=21%  Similarity=0.348  Sum_probs=142.8

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCC--CCHHHHHHHHhcCC
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG--LTIQEAREALNNKD   81 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~--~~~~~a~~~l~~~~   81 (306)
                      +...|.|.| .+.+|||+|.++.+.....|++|..|.++|||+++|+|+.||+|++|||+++.+  ++|.+++.+++.++
T Consensus        18 ~~~~v~~~~-~~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~   96 (206)
T 3r0h_A           18 KKILIELKV-EKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTY   96 (206)
T ss_dssp             SCEEEEEEC-TTSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHSCC
T ss_pred             CEEEEEEEe-CCCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHhcC
Confidence            456788988 568999999998654322589999999999999999999999999999999999  99999999999998


Q ss_pred             Ce-EEEEEEeCCCCCcccCcCCCCCCCCCCCCCCchhhhhcccccccccCCCCCCCChhhhhcCccceeeecccCccccc
Q psy8436          82 SH-VEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEKSQ  160 (306)
Q Consensus        82 ~~-v~L~v~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (306)
                      .. |.|+|.|.....                                                                 
T Consensus        97 ~~~v~l~v~R~~~~~-----------------------------------------------------------------  111 (206)
T 3r0h_A           97 EKAVTLTVFRADPPE-----------------------------------------------------------------  111 (206)
T ss_dssp             SSEEEEEEECCSSCC-----------------------------------------------------------------
T ss_pred             CCceEEEEEecccCC-----------------------------------------------------------------
Confidence            87 999999863210                                                                 


Q ss_pred             ccccccccccccccccceecccCCCCCCcCccccCCCCCCCCCCCCCCCCcCCCCCCccceEEEEEEeCCCCCcccEEEE
Q psy8436         161 TSNCSKIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIV  240 (306)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k~~~~~~lG~~l~  240 (306)
                                                                                ...+++.+.+... .+|||++.
T Consensus       112 ----------------------------------------------------------~~~~~v~l~~~~~-~~lG~~~~  132 (206)
T 3r0h_A          112 ----------------------------------------------------------LEKFNVDLMKKAG-KELGLSLS  132 (206)
T ss_dssp             ----------------------------------------------------------EEEEEEEEECCTT-CCCCEEEE
T ss_pred             ----------------------------------------------------------CcEEEEEEecCCC-CccCeEEE
Confidence                                                                      1234566666543 57999998


Q ss_pred             cCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436         241 GGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL  305 (306)
Q Consensus       241 gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l  305 (306)
                      ++.      .|+||..|.++|+|+++|+|++||+|++|||+++.+++|++++.+|++.. +.+.|
T Consensus       133 ~~~------~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-~~v~L  190 (206)
T 3r0h_A          133 PNE------IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGAN-GKVSM  190 (206)
T ss_dssp             ECS------SCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SEEEE
T ss_pred             cCC------ceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEE
Confidence            654      58999999999999999889999999999999999999999999998754 44443

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.96  E-value=9.8e-28  Score=199.61  Aligned_cols=182  Identities=23%  Similarity=0.365  Sum_probs=145.6

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      ..+.|.|.|..+++|||+|.++....  .+++|..|.++|||+++|.|+.||+|++|||+++.+++|.++..+++.+++.
T Consensus         7 ~~~~v~l~~~~~~~lG~~i~~~~~~~--~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~   84 (200)
T 2qt5_A            7 GSTVVELMKKEGTTLGLTVSGGIDKD--GKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGER   84 (200)
T ss_dssp             EEEEEEEECCTTCCCCEEEECCTTSS--SCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSE
T ss_pred             CCEEEEEEeCCCCCCCEEEecccCCC--CCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            46788999988999999999886543  5799999999999999933999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCCcccCcCCCCCCCCCCCCCCchhhhhcccccccccCCCCCCCChhhhhcCccceeeecccCcccccccc
Q psy8436          84 VEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEKSQTSN  163 (306)
Q Consensus        84 v~L~v~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (306)
                      |.|+|.|..+...   .           ..                                                  
T Consensus        85 v~l~v~R~~~~~~---~-----------~g--------------------------------------------------  100 (200)
T 2qt5_A           85 VVLEVEYELPPVS---I-----------QG--------------------------------------------------  100 (200)
T ss_dssp             EEEEEEEECCCCC---C-----------CC--------------------------------------------------
T ss_pred             EEEEEeccCCCcc---c-----------CC--------------------------------------------------
Confidence            9999988532100   0           00                                                  


Q ss_pred             cccccccccccccceecccCCCCCCcCccccCCCCCCCCCCCCCCCCcCCCCCCccceEEEEEEeCCCCCcccEEEEcCC
Q psy8436         164 CSKIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGR  243 (306)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k~~~~~~lG~~l~gg~  243 (306)
                                                                         .........+.+.+.  ...|||.+.++.
T Consensus       101 ---------------------------------------------------~~~~~~~~~v~l~~~--~~~lG~~l~~g~  127 (200)
T 2qt5_A          101 ---------------------------------------------------SSVMFRTVEVTLHKE--GNTFGFVIRGGA  127 (200)
T ss_dssp             ---------------------------------------------------SSEEEEEEEEEEECB--TTBCSEEEEEEC
T ss_pred             ---------------------------------------------------CccceeEEEEEEecC--CCCeEEEEECCC
Confidence                                                               000012345666554  367999998765


Q ss_pred             CCCC-CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436         244 DSPK-GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL  305 (306)
Q Consensus       244 ~~~~-~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l  305 (306)
                      +... ...|++|..|.++|+|+++|+|++||+|++|||+++.++++++++.+|++ +++.+.|
T Consensus       128 ~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~v~l  189 (200)
T 2qt5_A          128 HDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEATL  189 (200)
T ss_dssp             CSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-TCSEEEE
T ss_pred             CCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEE
Confidence            4211 13589999999999999999999999999999999999999999999998 6666654

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.95  E-value=7.2e-27  Score=193.74  Aligned_cols=181  Identities=22%  Similarity=0.311  Sum_probs=145.5

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCC--cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGA--HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK   80 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~--~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~   80 (306)
                      -+.++|.|.|.+..+|||++.++....  ...+++|..|.++|||+++|+|+.||+|++|||+.+.+++|.++..+|+..
T Consensus         5 ~~~~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~   84 (196)
T 1p1d_A            5 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS   84 (196)
T ss_dssp             CEEEEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTC
T ss_pred             cEEEEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            467889999988899999999985432  235799999999999999999999999999999999999999999999988


Q ss_pred             --CCeEEEEEEeCCCCCcccCcCCCCCCCCCCCCCCchhhhhcccccccccCCCCCCCChhhhhcCccceeeecccCccc
Q psy8436          81 --DSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEK  158 (306)
Q Consensus        81 --~~~v~L~v~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (306)
                        +..|.|+|.|.......          |                                                  
T Consensus        85 ~~g~~v~l~v~R~~~~~~~----------~--------------------------------------------------  104 (196)
T 1p1d_A           85 SITSKVTLEIEFDVAESVI----------P--------------------------------------------------  104 (196)
T ss_dssp             CSSSEEEEEEEECSCSCCB----------C--------------------------------------------------
T ss_pred             CCCCeEEEEEEecCCCCCC----------C--------------------------------------------------
Confidence              67899999986532100          0                                                  


Q ss_pred             ccccccccccccccccccceecccCCCCCCcCccccCCCCCCCCCCCCCCCCcCCCCCCccceEEEEEEeCCCCCcccEE
Q psy8436         159 SQTSNCSKIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFS  238 (306)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k~~~~~~lG~~  238 (306)
                                                                              .   ...+.+.+.+.. ...|||.
T Consensus       105 --------------------------------------------------------~---~~~~~v~l~~~~-~~~lG~~  124 (196)
T 1p1d_A          105 --------------------------------------------------------S---SGTFHVKLPKKH-SVELGIT  124 (196)
T ss_dssp             --------------------------------------------------------C---SSCEEEEECCCS-SCCCCCE
T ss_pred             --------------------------------------------------------C---CCcEEEEecCCC-CCCcCEE
Confidence                                                                    0   001234444332 2579999


Q ss_pred             EEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436         239 IVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL  305 (306)
Q Consensus       239 l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l  305 (306)
                      +....+.. ...|++|..|.++|+|+++|+|++||+|++|||+++.+++++++.++|++. ++.+.|
T Consensus       125 ~~~~~~~~-~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l  189 (196)
T 1p1d_A          125 ISSPSSRK-PGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC-EDLVKL  189 (196)
T ss_dssp             EECSCSSS-TTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHC-TTCEEE
T ss_pred             EECCCCCC-CCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEE
Confidence            98764332 125899999999999999988999999999999999999999999999987 666654

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.95  E-value=1.6e-26  Score=226.02  Aligned_cols=171  Identities=32%  Similarity=0.562  Sum_probs=144.0

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCC---cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGA---HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN   79 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~---~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~   79 (306)
                      -+.++|.|.|.. ++|||+|.||.+..   ...|++|..|.+||||+++|+|+.||+|++|||+++.+++|.+++.+|+.
T Consensus        58 ~~~~~v~l~k~~-~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~  136 (721)
T 2xkx_A           58 MEYEEITLERGN-SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE  136 (721)
T ss_pred             ceEEEEEEEeCC-CCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhc
Confidence            356889999966 69999999986542   24689999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEEeCCCCCcccCcCCCCCCCCCCCCCCchhhhhcccccccccCCCCCCCChhhhhcCccceeeecccCcccc
Q psy8436          80 KDSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEKS  159 (306)
Q Consensus        80 ~~~~v~L~v~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (306)
                      ++..|.|+|.|.....                                                                
T Consensus       137 ~g~~v~l~v~R~~~~~----------------------------------------------------------------  152 (721)
T 2xkx_A          137 AGSIVRLYVMRRKPPA----------------------------------------------------------------  152 (721)
T ss_pred             cccccceEEEeccccc----------------------------------------------------------------
Confidence            9999999998853110                                                                


Q ss_pred             cccccccccccccccccceecccCCCCCCcCccccCCCCCCCCCCCCCCCCcCCCCCCccceEEEEEEeCCCCCcccEEE
Q psy8436         160 QTSNCSKIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSI  239 (306)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k~~~~~~lG~~l  239 (306)
                                                                                 ...++|+|.+..  .+|||++
T Consensus       153 -----------------------------------------------------------~~~~~v~l~k~~--~~lG~~i  171 (721)
T 2xkx_A          153 -----------------------------------------------------------EKVMEIKLIKGP--KGLGFSI  171 (721)
T ss_pred             -----------------------------------------------------------ccceeeeeeeec--CCCceee
Confidence                                                                       012356776653  5799999


Q ss_pred             EcCCCCC--CCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         240 VGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       240 ~gg~~~~--~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      .++.+..  .+..|++|..|.++|+|+++|+|++||+|++|||+++.+++|.+++.+|+...
T Consensus       172 ~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~  233 (721)
T 2xkx_A          172 AGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTY  233 (721)
T ss_pred             ccCCCccccCCCCceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHcCC
Confidence            8875432  12368999999999999999999999999999999999999999999998754

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.92  E-value=2e-23  Score=204.06  Aligned_cols=227  Identities=25%  Similarity=0.434  Sum_probs=147.5

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCCc---CCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGAH---FSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~~---~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      ..+|.|.+. ..+|||++.++....+   ..|++|..|.++|+|+++|+|++||+|++|||+++.+++|.+++.+++.++
T Consensus       155 ~~~v~l~k~-~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~  233 (721)
T 2xkx_A          155 VMEIKLIKG-PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTY  233 (721)
T ss_pred             ceeeeeeee-cCCCceeeccCCCccccCCCCceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHcCC
Confidence            356778774 5689999998743221   258999999999999999999999999999999999999999999999998


Q ss_pred             CeEEEEEEeCCCCCcccCcCCCCCCCCCCCCCCchhhhhcccccccccCCCCCCCChhhhhcCccceeeecccCcccccc
Q psy8436          82 SHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEKSQT  161 (306)
Q Consensus        82 ~~v~L~v~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (306)
                      ..|.|+|.|.........     ...|........    .         . ....+.                  .    
T Consensus       234 ~~v~l~V~R~g~~~~~~~-----~~~p~~~~~~s~----~---------~-~~~~~~------------------~----  272 (721)
T 2xkx_A          234 DVVYLKVAKPSNAYLSDS-----YAPPDITTSYSQ----H---------L-DNEISH------------------S----  272 (721)
T ss_pred             CeEEEEEEeCCcccccCC-----CCCCCcccCCCC----C---------c-ccccCC------------------c----
Confidence            999999999764321000     000000000000    0         0 000000                  0    


Q ss_pred             cccccccccccccccceecccCCCCCCcCccccCCCCCCCCCCCCCCCCcCCCCCCccceEEEEEEeCCCCCcccEEEEc
Q psy8436         162 SNCSKIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVG  241 (306)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k~~~~~~lG~~l~g  241 (306)
                      ...+.             ......+..       .....++..  ... . .........+.|.|.+..  .+|||++.+
T Consensus       273 ~~~~~-------------~~~~~~~~~-------~~~~~~p~~--~~~-~-~~~~~~~~~~~v~l~~~~--~~lG~~i~~  326 (721)
T 2xkx_A          273 SYLGT-------------DYPTAMTPT-------SPRRYSPVA--KDL-L-GEEDIPREPRRIVIHRGS--TGLGFNIVG  326 (721)
T ss_pred             ccccc-------------cccccCCCC-------CCcccCCcc--ccc-c-cccccccceEEEEEEECC--CCccEEEec
Confidence            00000             000000000       000000000  000 0 000112346778898874  679999988


Q ss_pred             CCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCcee
Q psy8436         242 GRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSK  304 (306)
Q Consensus       242 g~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~  304 (306)
                      +.+.    .|+||..|.++|+|+++|+|++||+|++|||+++.+++|++++.+|++.. +.+.
T Consensus       327 ~~~~----~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~-~~v~  384 (721)
T 2xkx_A          327 GEDG----EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG-QTVT  384 (721)
T ss_pred             cCCC----CCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhcC-CeEE
Confidence            7652    59999999999999999999999999999999999999999999999864 4443

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=99.92  E-value=2e-26  Score=209.76  Aligned_cols=161  Identities=21%  Similarity=0.424  Sum_probs=78.2

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--   80 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--   80 (306)
                      ...+.|.|.|..+++|||+|.+...+...+|++|..|.++|||+++|+|+.||+|++|||+++.+++|.+++.+|+..  
T Consensus       203 ~~~~~V~i~k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~  282 (388)
T 3suz_A          203 ENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKN  282 (388)
T ss_dssp             SCCEEEEECCCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTT
T ss_pred             ccceEEEEECCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccC
Confidence            457899999988899999999865554456799999999999999999999999999999999999999999999986  


Q ss_pred             CCeEEEEEEeCCCCCcccCcCCCCCCCCCCCCCCchhhhhcccccccccCCCCCCCChhhhhcCccceeeecccCccccc
Q psy8436          81 DSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEKSQ  160 (306)
Q Consensus        81 ~~~v~L~v~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (306)
                      +..|.|+|.|.....                                                                 
T Consensus       283 ~~~v~l~v~r~~~~~-----------------------------------------------------------------  297 (388)
T 3suz_A          283 QTQVKLNIVSCPPVT-----------------------------------------------------------------  297 (388)
T ss_dssp             CSCEEEEEEECCSCC-----------------------------------------------------------------
T ss_pred             CCccccccccccccc-----------------------------------------------------------------
Confidence            345999998853211                                                                 


Q ss_pred             ccccccccccccccccceecccCCCCCCcCccccCCCCCCCCCCCCCCCCcCCCCCCccceEEEEEEeCCCCCcccEEEE
Q psy8436         161 TSNCSKIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIV  240 (306)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k~~~~~~lG~~l~  240 (306)
                                                                                    ++.+.......+|||.+.
T Consensus       298 --------------------------------------------------------------~v~l~~~~~~~~lG~~i~  315 (388)
T 3suz_A          298 --------------------------------------------------------------TVLIKRPDLKYQLGFSVQ  315 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------eeeEeecCCCCccceEEe
Confidence                                                                          111111111246999875


Q ss_pred             cCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCC
Q psy8436         241 GGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQ  301 (306)
Q Consensus       241 gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~  301 (306)
                      +          .+|..|.++|+|+++| |++||+|++|||+++.+++|++++.+|++.+..
T Consensus       316 ~----------g~I~~V~~gs~A~~aG-L~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~  365 (388)
T 3suz_A          316 N----------GIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSVGE  365 (388)
T ss_dssp             -------------------------------------------------------------
T ss_pred             c----------CEEEEeecCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            3          3799999999999999 999999999999999999999999999986543

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.91  E-value=1.3e-22  Score=163.61  Aligned_cols=151  Identities=19%  Similarity=0.322  Sum_probs=126.0

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CC
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-DS   82 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~   82 (306)
                      +.|+|.|.|....+|||++....     .|++|..|.++|||+++| |+.||+|++|||+++.+++++.+..+++.. +.
T Consensus         4 ~~r~v~l~k~~~~~lG~~~~~~~-----~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~   77 (166)
T 1w9e_A            4 DPREVILCKDQDGKIGLRLKSID-----NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGE   77 (166)
T ss_dssp             CCEEEEEECCTTSCCSEEEEEET-----TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSS
T ss_pred             CCEEEEEEeCCCCcEeEEEEeCC-----CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCC
Confidence            57899999988889999998753     479999999999999999 999999999999999999987888888775 45


Q ss_pred             eEEEEEEeCCCCCcccCcCCCCCCCCCCCCCCchhhhhcccccccccCCCCCCCChhhhhcCccceeeecccCccccccc
Q psy8436          83 HVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEKSQTS  162 (306)
Q Consensus        83 ~v~L~v~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (306)
                      .+.|+|++...                                                                     
T Consensus        78 ~v~l~vr~~~~---------------------------------------------------------------------   88 (166)
T 1w9e_A           78 KITMTIRDRPF---------------------------------------------------------------------   88 (166)
T ss_dssp             EEEEEEECCTT---------------------------------------------------------------------
T ss_pred             EEEEEEEcCCC---------------------------------------------------------------------
Confidence            89999944311                                                                     


Q ss_pred             ccccccccccccccceecccCCCCCCcCccccCCCCCCCCCCCCCCCCcCCCCCCccceEEEEEEeCCCCCcccEEEEcC
Q psy8436         163 NCSKIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGG  242 (306)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k~~~~~~lG~~l~gg  242 (306)
                                                                                .+++.+.+.. ...|||.+.  
T Consensus        89 ----------------------------------------------------------~~~v~l~~~~-~~~lG~~~~--  107 (166)
T 1w9e_A           89 ----------------------------------------------------------ERTITMHKDS-TGHVGFIFK--  107 (166)
T ss_dssp             ----------------------------------------------------------CEEEEEECCT-TSCCSEEEE--
T ss_pred             ----------------------------------------------------------cEEEEEecCC-CCcEeEEEe--
Confidence                                                                      1234554332 357999987  


Q ss_pred             CCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         243 RDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       243 ~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                             .| +|..|.++++|+++| |++||+|++|||.++.++++.++...++...
T Consensus       108 -------~g-~v~~v~~~s~a~~aG-l~~GD~I~~ing~~v~~~~~~~v~~~v~r~g  155 (166)
T 1w9e_A          108 -------NG-KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSG  155 (166)
T ss_dssp             -------TT-EEEEECTTSHHHHTT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred             -------CC-EEEEEccCCHHHHcC-CCCCCEEEEECCEECCCCChHHHHHHHhhCC
Confidence                   14 899999999999998 9999999999999999999999888877644

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=99.83  E-value=1.8e-19  Score=150.51  Aligned_cols=157  Identities=20%  Similarity=0.173  Sum_probs=107.1

Q ss_pred             ceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCC-CEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCC
Q psy8436          17 ELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVG-DELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDA   95 (306)
Q Consensus        17 ~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~G-D~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~~~   95 (306)
                      ++|++...+...  ..|++|..|.++|||+++| |+.| |+|++|||+.+.++......-+....+..+.|+|.|.....
T Consensus         3 g~~~~~~~~~~~--~~G~~V~~V~~~SpA~~AG-L~~G~D~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~   79 (209)
T 3rle_A            3 GSSQSVEIPGGG--TEGYHVLRVQENSPGHRAG-LEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLE   79 (209)
T ss_dssp             -----CCCTTSS--SEEEEEEEECTTSHHHHTT-CCTTTEEEEEETTEECCSSSSHHHHHHHHTTTSCEEEEEEETTTCC
T ss_pred             chhhhhhccCCC--CCEEEEEEECCCCHHHHCC-CCcCCeEEEEECCEECcCHHHHHHHHHhcCCCCEEEEEEEecCCce
Confidence            444444433332  3689999999999999999 9999 99999999999988754443233344778999999864221


Q ss_pred             cccCcCCCCCCCCCCCCCCchhhhhcccccccccCCCCCCCChhhhhcCccceeeecccCcccccccccccccccccccc
Q psy8436          96 KSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEKSQTSNCSKIRNKVTGMR  175 (306)
Q Consensus        96 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (306)
                      .                                                                               
T Consensus        80 ~-------------------------------------------------------------------------------   80 (209)
T 3rle_A           80 L-------------------------------------------------------------------------------   80 (209)
T ss_dssp             E-------------------------------------------------------------------------------
T ss_pred             E-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             cceecccCCCCCCcCccccCCCCCCCCCCCCCCCCcCCCCCCccceEEEEEEeC---CCCCcccEEEEcCCCCCCCCCcE
Q psy8436         176 KFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKG---PGQKSLGFSIVGGRDSPKGNLGI  252 (306)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k~---~~~~~lG~~l~gg~~~~~~~~gi  252 (306)
                                                                    ..+++...   .....||+++...........|+
T Consensus        81 ----------------------------------------------~~v~l~p~~~~~~~~~lGi~~~~~~~~~~~~~Gv  114 (209)
T 3rle_A           81 ----------------------------------------------RETSVTPSNLWGGQGLLGVSIRFCSFDGANENVW  114 (209)
T ss_dssp             ----------------------------------------------EEEEECCCSSSSSSSSSCEEEEEEECTTGGGSCE
T ss_pred             ----------------------------------------------EEEEEcccccccccCccceEEeecChhHccccce
Confidence                                                          00011000   00135888876322211112589


Q ss_pred             EEEEEcCCChhhhcCCCCC-CCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436         253 FVKTIFQSGQAAENEKLRE-GDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL  305 (306)
Q Consensus       253 ~V~~V~~~g~A~~~G~L~~-GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l  305 (306)
                      +|..|.++|||+++| |++ ||+|++|||. +.++  +++..+|++.+++.+.|
T Consensus       115 ~V~~V~~~spA~~aG-l~~~GD~I~~ing~-v~~~--~~l~~~l~~~~g~~v~l  164 (209)
T 3rle_A          115 HVLEVESNSPAALAG-LRPHSDYIIGADTV-MNES--EDLFSLIETHEAKPLKL  164 (209)
T ss_dssp             EEEEECTTSHHHHHT-CCTTTEEEEEESSC-CCSS--SCHHHHHHHTTTSCEEE
T ss_pred             EEEEeCCCChHHHCC-CCCCCCEEEECCCE-eCCH--HHHHHHHHhCCCCeEEE
Confidence            999999999999999 999 9999999997 6554  68888888887777654

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.80  E-value=5.4e-19  Score=126.41  Aligned_cols=86  Identities=20%  Similarity=0.285  Sum_probs=75.5

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--C
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--D   81 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~   81 (306)
                      +.+.|.|.|. .++|||+|.++..    ..+||+.|.++|+|+++|.|++||+|++|||+++.+++|.+++.+|+.+  +
T Consensus         5 ~~k~V~l~K~-~~~LG~tI~~~g~----g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g   79 (95)
T 3gge_A            5 IEKEVNVYKS-EDSLGLTITDNGV----GYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKE   79 (95)
T ss_dssp             EEEEEEEECC-SSCCCEEEECSSS----SCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTT
T ss_pred             eEEEEEEEEC-CCCceEEEEcCCC----CcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCC
Confidence            4578999995 4899999996533    3499999999999999999999999999999999999999999999997  4


Q ss_pred             CeEEEEEEeCCCC
Q psy8436          82 SHVEIVICRNPDD   94 (306)
Q Consensus        82 ~~v~L~v~r~~~~   94 (306)
                      ..++|++.++.+.
T Consensus        80 ~~~~L~lv~p~~~   92 (95)
T 3gge_A           80 ELFTMKLIEPKKS   92 (95)
T ss_dssp             CEEEEEEEEECSC
T ss_pred             CEEEEEEECcccc
Confidence            4799999887543

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.78  E-value=1.7e-18  Score=121.57  Aligned_cols=77  Identities=18%  Similarity=0.324  Sum_probs=71.0

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      ..|+|.|.|++.++|||++.+        | +|..|.++|||+++| |+.||+|++|||+++.+++|++++++|+.++..
T Consensus         4 ~~r~v~l~k~~~g~~Gf~i~~--------g-~I~~v~~gspA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~   73 (82)
T 1r6j_A            4 DPRTITMHKDSTGHVGFIFKN--------G-KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTV   73 (82)
T ss_dssp             CCEEEEEECCTTSCCCEEEET--------T-EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSE
T ss_pred             ceEEEEEEECCCCCeEEEEEC--------C-EEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCE
Confidence            468999999888899999984        3 378999999999999 999999999999999999999999999999999


Q ss_pred             EEEEEEe
Q psy8436          84 VEIVICR   90 (306)
Q Consensus        84 v~L~v~r   90 (306)
                      |+|+|..
T Consensus        74 V~L~v~p   80 (82)
T 1r6j_A           74 VTITIMP   80 (82)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999864

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.77  E-value=5.2e-18  Score=121.31  Aligned_cols=78  Identities=23%  Similarity=0.238  Sum_probs=70.0

Q ss_pred             ccceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       218 ~~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      ...++.|+|.|..  ++|||+|.++..     ..+||++|.++|+|+++|.|++||+|++|||+++.+++|.|++++||+
T Consensus         3 ~g~~k~V~l~K~~--~~LG~tI~~~g~-----g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~   75 (95)
T 3gge_A            3 KGIEKEVNVYKSE--DSLGLTITDNGV-----GYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKE   75 (95)
T ss_dssp             CEEEEEEEEECCS--SCCCEEEECSSS-----SCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             CCeEEEEEEEECC--CCceEEEEcCCC-----CcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHh
Confidence            3667899999985  799999986432     468999999999999999999999999999999999999999999999


Q ss_pred             cCCCc
Q psy8436         298 IFPQS  302 (306)
Q Consensus       298 ~~~~~  302 (306)
                      .+.+.
T Consensus        76 ~~~g~   80 (95)
T 3gge_A           76 LKKEE   80 (95)
T ss_dssp             SCTTC
T ss_pred             CCCCC
Confidence            98765

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.76  E-value=7.1e-18  Score=127.54  Aligned_cols=89  Identities=28%  Similarity=0.424  Sum_probs=79.8

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCC-CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGG-AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~-~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      ..++|.|.|.++.+|||+|.++... ....|+||..|.++|||+++|+|++||+|++|||+++.++++++++.+|+.+++
T Consensus        24 ~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~  103 (118)
T 3b76_A           24 HEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSS  103 (118)
T ss_dssp             EEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSCCS
T ss_pred             CcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            4688999998889999999998532 123589999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeCC
Q psy8436          83 HVEIVICRNP   92 (306)
Q Consensus        83 ~v~L~v~r~~   92 (306)
                      .|.|+|.|..
T Consensus       104 ~v~L~v~R~~  113 (118)
T 3b76_A          104 SIVLKALEVK  113 (118)
T ss_dssp             EEEEEEEEEE
T ss_pred             eEEEEEEECC
Confidence            9999998853

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.75  E-value=2.9e-18  Score=127.85  Aligned_cols=90  Identities=24%  Similarity=0.358  Sum_probs=79.6

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC---
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK---   80 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~---   80 (306)
                      +.++|.|.|++..+|||+|.++.......|+||..|.++|||+++|+|++||+|++|||+++.+++|++++.+|+.+   
T Consensus         5 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~   84 (108)
T 3cbz_A            5 NIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK   84 (108)
T ss_dssp             CEEEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTS
T ss_pred             eEEEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccC
Confidence            57889999877889999999985433346899999999999999999999999999999999999999999999987   


Q ss_pred             CCeEEEEEEeCCC
Q psy8436          81 DSHVEIVICRNPD   93 (306)
Q Consensus        81 ~~~v~L~v~r~~~   93 (306)
                      +..|.|+|.|...
T Consensus        85 ~~~v~l~v~R~~~   97 (108)
T 3cbz_A           85 PGPIVLTVAKSGG   97 (108)
T ss_dssp             SSCEEEEEECCCC
T ss_pred             CCeEEEEEEeCCC
Confidence            4579999998653

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.75  E-value=1.8e-17  Score=120.69  Aligned_cols=89  Identities=22%  Similarity=0.333  Sum_probs=80.5

Q ss_pred             ccccEEEEEEeC-CCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy8436           2 EKQFKVFRVVKD-DSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK   80 (306)
Q Consensus         2 ~~~~~~v~l~r~-~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~   80 (306)
                      |.+..+|.|.|. ++.+|||++.++...   .|++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++.+
T Consensus         1 e~~~~~v~l~k~~~~~~lG~~~~~~~~~---~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   77 (95)
T 2vwr_A            1 SMEILQVALHKRDSGEQLGIKLVRRTDE---PGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQAS   77 (95)
T ss_dssp             CEEEEEEEEECSSTTCCCCEEEEECSSS---CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             CcEEEEEEEEECCCCCcccEEEEeccCC---CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            457889999996 567999999987654   5899999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEeCCC
Q psy8436          81 DSHVEIVICRNPD   93 (306)
Q Consensus        81 ~~~v~L~v~r~~~   93 (306)
                      +..+.|+|.|...
T Consensus        78 g~~v~l~v~R~~~   90 (95)
T 2vwr_A           78 GERVNLTIARPGK   90 (95)
T ss_dssp             CSEEEEEEEEESC
T ss_pred             CCEEEEEEEcCCc
Confidence            9999999998654

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.74  E-value=1.7e-17  Score=120.33  Aligned_cols=88  Identities=27%  Similarity=0.436  Sum_probs=77.2

Q ss_pred             CccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy8436           1 MEKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK   80 (306)
Q Consensus         1 ~~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~   80 (306)
                      .|+.+|.|.|.|. +++|||++.++...   .+++|..|.++|||+++|+|+.||+|++|||+++.+++|++++.+|+.+
T Consensus         1 ~~~~~r~v~l~k~-~~~lG~~i~~~~~~---~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~   76 (93)
T 3o46_A            1 GSDSVKIIRLVKN-REPLGATIKKDEQT---GAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQS   76 (93)
T ss_dssp             ---CCEEEEEEES-SSCCCEEEEECTTT---CCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHC
T ss_pred             CCccEEEEEEEeC-CCCccEEEEecCCC---CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            3678999999996 56999999987332   5799999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEeCC
Q psy8436          81 DSHVEIVICRNP   92 (306)
Q Consensus        81 ~~~v~L~v~r~~   92 (306)
                      ++.|.|+|.+..
T Consensus        77 ~~~v~l~v~~~~   88 (93)
T 3o46_A           77 QGAITFKIIPGS   88 (93)
T ss_dssp             CEEEEEEEECC-
T ss_pred             CCeEEEEEEeCC
Confidence            889999998754

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.74  E-value=6.1e-18  Score=128.44  Aligned_cols=91  Identities=22%  Similarity=0.407  Sum_probs=75.8

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCC-cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~-~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      ...++|.|.|.++++|||+|.++.... ...|+||..|.++|||+++|.|++||+|++|||+++.+++|.+++.+++.++
T Consensus        23 ~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~  102 (120)
T 2iwo_A           23 MGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNAS  102 (120)
T ss_dssp             --CEEEEEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCC
T ss_pred             CCcEEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            457899999988789999999985311 1247999999999999999559999999999999999999999999999999


Q ss_pred             CeEEEEEEeCCC
Q psy8436          82 SHVEIVICRNPD   93 (306)
Q Consensus        82 ~~v~L~v~r~~~   93 (306)
                      +.|+|+|.|...
T Consensus       103 ~~v~l~v~r~g~  114 (120)
T 2iwo_A          103 GSIEMQVVAGGD  114 (120)
T ss_dssp             SEEEEEEECCTT
T ss_pred             CeEEEEEEECCc
Confidence            999999999754

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.74  E-value=2.6e-17  Score=119.07  Aligned_cols=87  Identities=22%  Similarity=0.330  Sum_probs=79.1

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      .+.++|.|.|.++.+|||++.++...   .|++|..|.++|||+++|+|++||+|++|||+++.+++++++..+++.++.
T Consensus         3 ~~~~~v~l~k~~~~~lG~~~~~~~~~---~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   79 (92)
T 2qg1_A            3 SDTLTIGLQKKPGKGLGLSIVGKRND---TGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLG   79 (92)
T ss_dssp             -CEEEEEEECCTTSCCSEEEECCSSS---CSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             ceEEEEEEEeCCCCcccEEEEeccCC---CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            35788999998889999999987543   589999999999999999999999999999999999999999999999888


Q ss_pred             eEEEEEEeCC
Q psy8436          83 HVEIVICRNP   92 (306)
Q Consensus        83 ~v~L~v~r~~   92 (306)
                      .+.|+|.|..
T Consensus        80 ~v~l~v~R~~   89 (92)
T 2qg1_A           80 TVTLEVGRIS   89 (92)
T ss_dssp             EEEEEEECCC
T ss_pred             eEEEEEEccc
Confidence            9999999875

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.74  E-value=1.9e-17  Score=123.56  Aligned_cols=88  Identities=28%  Similarity=0.475  Sum_probs=78.2

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC-
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD-   81 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~-   81 (306)
                      .+++.|.|.|.  .+|||+|.|+.......++||..|.++|||+++|+|++||+|++|||+++.+++|++++++|+.+. 
T Consensus        14 ~~~~~v~l~k~--~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~   91 (109)
T 1wi4_A           14 PAFRVITVTKE--TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKL   91 (109)
T ss_dssp             TTEEEEEECCS--SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCC
T ss_pred             CcEEEEEEeCC--CccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcccc
Confidence            46889999884  699999999865444458999999999999999999999999999999999999999999999875 


Q ss_pred             ---CeEEEEEEeCC
Q psy8436          82 ---SHVEIVICRNP   92 (306)
Q Consensus        82 ---~~v~L~v~r~~   92 (306)
                         ..+.|.|.|..
T Consensus        92 r~~~~~~l~v~R~~  105 (109)
T 1wi4_A           92 RSESPWEIAFIRSG  105 (109)
T ss_dssp             SSSSCEEEEEECCC
T ss_pred             CCCceEEEEEEeCC
Confidence               57899998864

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.73  E-value=6.7e-17  Score=149.24  Aligned_cols=59  Identities=24%  Similarity=0.432  Sum_probs=50.6

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L~v~r~~~   93 (306)
                      .|++|..|.++|||+++| |+.||+|++|||+.+.++  .+...++..  .++.|.|+|.|+..
T Consensus       263 ~G~~V~~V~~~spA~~aG-L~~GD~I~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~  323 (436)
T 4a8c_A          263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGK  323 (436)
T ss_pred             cceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence            589999999999999999 999999999999999954  556666554  47899999999753

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.73  E-value=1.9e-17  Score=118.70  Aligned_cols=85  Identities=22%  Similarity=0.449  Sum_probs=75.7

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      .+|+|.|.|.++.+|||+|.++..    .+++|..|.++|||++++.|++||+|++|||+++.+++|+++..+|+.++..
T Consensus         1 ~~r~V~l~K~~~~~lG~~i~~~~~----~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~   76 (88)
T 1kwa_A            1 RSRLVQFQKNTDEPMGITLKMNEL----NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGS   76 (88)
T ss_dssp             CCEEEEEEECSSSCCCEEEECSCG----GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEE
T ss_pred             CeEEEEEEeCCCCceeEEEEeCCC----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCc
Confidence            478999999888999999997532    3699999999999999444999999999999999999999999999998778


Q ss_pred             EEEEEEeCC
Q psy8436          84 VEIVICRNP   92 (306)
Q Consensus        84 v~L~v~r~~   92 (306)
                      |.|+|.|..
T Consensus        77 v~l~v~r~~   85 (88)
T 1kwa_A           77 ITFKIVPSY   85 (88)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEECCc
Confidence            999998864

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.73  E-value=1.7e-17  Score=122.58  Aligned_cols=89  Identities=29%  Similarity=0.456  Sum_probs=78.5

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      .+++|.|.|..+.+|||+|.++....  .+++|..|.++|||++++.|++||+|++|||+++.++++.+++.+++.+++.
T Consensus         9 ~~~~v~l~~~~~~~lG~~l~~g~~~~--~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~   86 (103)
T 2dc2_A            9 PIRKVLLLKEDHEGLGISITGGKEHG--VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGE   86 (103)
T ss_dssp             CEEEEEEECCSSSCCCEEEEEEGGGT--EEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCSE
T ss_pred             CcEEEEEEeCCCCccCEEEEeccCCC--CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc
Confidence            46889999988899999999885432  4799999999999999733999999999999999999999999999999899


Q ss_pred             EEEEEEeCCCC
Q psy8436          84 VEIVICRNPDD   94 (306)
Q Consensus        84 v~L~v~r~~~~   94 (306)
                      |+|+|.+....
T Consensus        87 v~l~v~~~~~~   97 (103)
T 2dc2_A           87 IEFEVVYVALE   97 (103)
T ss_dssp             EEEEEEECC--
T ss_pred             EEEEEEecCCc
Confidence            99999987654

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.73  E-value=1.9e-17  Score=118.48  Aligned_cols=84  Identities=31%  Similarity=0.513  Sum_probs=76.0

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcc-cCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHR-DGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~-~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      +++.|.|.|+++.+|||++.++....  .+++|..|.++|||++ +| |++||+|++|||+++.+++|.+++.+++.+++
T Consensus         2 ~~~~v~l~~~~~~~lG~~i~~~~~~~--~~~~V~~V~~gspA~~~ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   78 (87)
T 4e34_A            2 PIRKVLLLKEDHEGLGISITGGKEHG--VPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQRG   78 (87)
T ss_dssp             CCEEEEEECCTTBCCCEEEEEEGGGT--EEEEEEEECTTSHHHHHSC-CCTTEEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             CEEEEEEEECCCCcccEEEEccCCCC--CCEEEEEECCCCHHHhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            57899999988889999999885432  5799999999999999 47 99999999999999999999999999999988


Q ss_pred             eEEEEEEe
Q psy8436          83 HVEIVICR   90 (306)
Q Consensus        83 ~v~L~v~r   90 (306)
                      .+.|+|.+
T Consensus        79 ~v~l~v~~   86 (87)
T 4e34_A           79 EIEFEVVY   86 (87)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEE
Confidence            99999865

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.73  E-value=2.1e-17  Score=123.25  Aligned_cols=90  Identities=29%  Similarity=0.413  Sum_probs=78.9

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCC--CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGG--AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN   79 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~--~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~   79 (306)
                      +.++++|.|.|.. .+|||+|.++...  ....|++|..|.++|||+++|+|++||+|++|||+++.+++|++++.+|+.
T Consensus        13 ~~~~~~v~l~k~~-~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   91 (108)
T 2d92_A           13 SPEVKIVELVKDC-KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKA   91 (108)
T ss_dssp             CSSCEEEEEEECS-SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHH
T ss_pred             CCceEEEEEEECC-CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            4578999999965 6999999997541  123689999999999999999999999999999999999999999999999


Q ss_pred             C-CCeEEEEEEeCC
Q psy8436          80 K-DSHVEIVICRNP   92 (306)
Q Consensus        80 ~-~~~v~L~v~r~~   92 (306)
                      + +..|.|+|.|..
T Consensus        92 ~~~~~v~l~v~R~~  105 (108)
T 2d92_A           92 VPPGLVHLGICSGP  105 (108)
T ss_dssp             SCSEEEEEEEECCC
T ss_pred             CCCCeEEEEEEcCC
Confidence            6 568999999864

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.73  E-value=2.8e-17  Score=118.37  Aligned_cols=88  Identities=31%  Similarity=0.346  Sum_probs=78.9

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      ..+.++|.|.|..+.+|||++.++....  .|++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+++.++
T Consensus         2 ~~~~~~v~l~k~~~~~lG~~i~~~~~~~--~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~   79 (90)
T 1qav_A            2 SLQRRRVTVRKADAGGLGISIKGGRENK--MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG   79 (90)
T ss_dssp             CSSCEEEEEECCTTTCCCEEEEEEGGGT--EEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             CCccEEEEEEeCCCCCcCEEEEcccCCC--CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            4568999999988899999999875432  57999999999999999449999999999999999999999999999998


Q ss_pred             CeEEEEEEeC
Q psy8436          82 SHVEIVICRN   91 (306)
Q Consensus        82 ~~v~L~v~r~   91 (306)
                      ..+.|+|.|.
T Consensus        80 ~~v~l~v~r~   89 (90)
T 1qav_A           80 KEVVLEVKYM   89 (90)
T ss_dssp             SEEEEEEEEC
T ss_pred             CeEEEEEEEe
Confidence            8999999874

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.73  E-value=5.5e-17  Score=119.44  Aligned_cols=91  Identities=22%  Similarity=0.433  Sum_probs=78.8

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--   79 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--   79 (306)
                      ..+++.|.|.|..+.+|||+|.+...+...++++|..|.++|||+++|.|++||+|++|||+++.+++++++..+|+.  
T Consensus         7 ~~~~~~v~l~k~~g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~   86 (101)
T 2yt7_A            7 GDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETK   86 (101)
T ss_dssp             TCCCEEEEEECCTTCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTT
T ss_pred             CCceEEEEEEeCCCCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            357899999998888999999864433334579999999999999976699999999999999999999999999998  


Q ss_pred             CCCeEEEEEEeCC
Q psy8436          80 KDSHVEIVICRNP   92 (306)
Q Consensus        80 ~~~~v~L~v~r~~   92 (306)
                      .+..|+|+|.|..
T Consensus        87 ~g~~v~l~v~R~~   99 (101)
T 2yt7_A           87 SQTSVTLSIVHCP   99 (101)
T ss_dssp             TSSEEEEEECCCC
T ss_pred             CCCeEEEEEEeCC
Confidence            6789999998864

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.73  E-value=5.6e-17  Score=119.63  Aligned_cols=92  Identities=25%  Similarity=0.358  Sum_probs=80.8

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCC---cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGA---HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALN   78 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~---~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~   78 (306)
                      +-+++.|.|.|. ..+|||+|.++.+..   ...|++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++
T Consensus         2 ~~~~~~v~l~k~-~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~   80 (102)
T 2i1n_A            2 MFKYEEIVLERG-NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALK   80 (102)
T ss_dssp             CEEEEEEEEECB-TTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             CceEEEEEEEEC-CCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            346789999995 679999999985421   1358999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCCCC
Q psy8436          79 NKDSHVEIVICRNPDD   94 (306)
Q Consensus        79 ~~~~~v~L~v~r~~~~   94 (306)
                      .++..+.|+|.|....
T Consensus        81 ~~g~~v~l~v~R~~~~   96 (102)
T 2i1n_A           81 EAGPVVRLVVRRRQPP   96 (102)
T ss_dssp             HSCSEEEEEEEEECCC
T ss_pred             cCCCeEEEEEEeCCCC
Confidence            9989999999997643

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.73  E-value=6.7e-17  Score=117.36  Aligned_cols=88  Identities=27%  Similarity=0.442  Sum_probs=77.8

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCC---cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGA---HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK   80 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~---~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~   80 (306)
                      ++++|.|.|. ..+|||+|.++....   ...|++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++.+
T Consensus         3 ~~~~v~l~k~-~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   81 (94)
T 2fe5_A            3 TIMEVNLLKG-PKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT   81 (94)
T ss_dssp             CEEEEEEECC-TTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC
T ss_pred             EEEEEEEEEC-CCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            5789999996 569999999985432   224899999999999999999999999999999999999999999999988


Q ss_pred             CCeEEEEEEeCC
Q psy8436          81 DSHVEIVICRNP   92 (306)
Q Consensus        81 ~~~v~L~v~r~~   92 (306)
                      ++.|.|+|.|..
T Consensus        82 ~~~v~l~v~R~g   93 (94)
T 2fe5_A           82 SDMVYLKVAKPG   93 (94)
T ss_dssp             CSEEEEEEECCC
T ss_pred             CCeEEEEEEcCC
Confidence            889999998864

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.72  E-value=5.3e-17  Score=125.30  Aligned_cols=91  Identities=16%  Similarity=0.265  Sum_probs=80.4

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCC---------c-CCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHH
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGA---------H-FSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQ   71 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~---------~-~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~   71 (306)
                      ..+.|+|.|.|...++|||+|.++....         . ..|++|..|.++|||+++| |+.||+|++|||+++.+++++
T Consensus        25 ~~~~r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~  103 (132)
T 3l4f_D           25 IIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHR  103 (132)
T ss_dssp             CCCCCEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEESSSBCTTSCHH
T ss_pred             CCCCEEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHH
Confidence            4567899999988889999999996531         1 1279999999999999999 999999999999999999999


Q ss_pred             HHHHHHhcCCCeEEEEEEeCCC
Q psy8436          72 EAREALNNKDSHVEIVICRNPD   93 (306)
Q Consensus        72 ~a~~~l~~~~~~v~L~v~r~~~   93 (306)
                      +++.+|+.++..+.|+|.+...
T Consensus       104 ~~~~~l~~~g~~v~l~v~~~~~  125 (132)
T 3l4f_D          104 QVVNMIRQGGNTLMVKVVMVTR  125 (132)
T ss_dssp             HHHHHHHHTTTEEEEEEECCCC
T ss_pred             HHHHHHHcCCCEEEEEEEECCC
Confidence            9999999999999999988653

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.72  E-value=4.3e-17  Score=125.61  Aligned_cols=86  Identities=28%  Similarity=0.499  Sum_probs=76.0

Q ss_pred             ccceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       218 ~~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      ...++.|.|.|..  .+|||+|.|+.+.+.+..++||..|.++++|+++|+|++||+|++|||+++.+++|++|+++|+.
T Consensus        27 ~~~~~~v~l~k~~--~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~  104 (130)
T 1i16_A           27 EATVCTVTLEKMS--AGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKA  104 (130)
T ss_dssp             SEEEEEEEEETTS--SSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHT
T ss_pred             CCcEEEEEEEcCC--CccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            3567889999874  68999999998865555789999999999999996699999999999999999999999999999


Q ss_pred             cCCCceec
Q psy8436         298 IFPQSSKL  305 (306)
Q Consensus       298 ~~~~~~~l  305 (306)
                      .+...+.|
T Consensus       105 ~~~~~v~l  112 (130)
T 1i16_A          105 LPDGPVTI  112 (130)
T ss_dssp             SCSSEEEE
T ss_pred             CCCceEEE
Confidence            98776654

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.72  E-value=3.8e-17  Score=119.64  Aligned_cols=90  Identities=23%  Similarity=0.350  Sum_probs=79.6

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCC----cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGA----HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALN   78 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~----~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~   78 (306)
                      ..+++|.|.|....+|||+|.++....    ...|++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++
T Consensus         4 e~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~   83 (98)
T 1ihj_A            4 ELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIK   83 (98)
T ss_dssp             CEEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             ceEEEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            347889999988889999999885432    1248999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCC
Q psy8436          79 NKDSHVEIVICRNP   92 (306)
Q Consensus        79 ~~~~~v~L~v~r~~   92 (306)
                      ..+..+.|+|.|..
T Consensus        84 ~~g~~v~l~v~R~g   97 (98)
T 1ihj_A           84 EADFKIELEIQTFD   97 (98)
T ss_dssp             HSCSEEEEEEEEC-
T ss_pred             cCCCeEEEEEEeCC
Confidence            98889999999864

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.72  E-value=6.8e-17  Score=119.81  Aligned_cols=91  Identities=27%  Similarity=0.460  Sum_probs=79.1

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCC---cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGA---HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN   79 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~---~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~   79 (306)
                      ..+++|.|.|.. .+|||+|.++.+..   ...|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++.
T Consensus         2 e~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   80 (105)
T 2awx_A            2 EKIMEIKLIKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKN   80 (105)
T ss_dssp             -CEEEEEEECBT-TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHS
T ss_pred             CeEEEEEEEECC-CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            357789999966 69999999985432   12489999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEEeCCCC
Q psy8436          80 KDSHVEIVICRNPDD   94 (306)
Q Consensus        80 ~~~~v~L~v~r~~~~   94 (306)
                      ++..|.|+|.|....
T Consensus        81 ~~~~v~l~v~R~~~~   95 (105)
T 2awx_A           81 TSDFVYLKVAKPTSM   95 (105)
T ss_dssp             CCSEEEEEEECCCC-
T ss_pred             CCCeEEEEEEcCCCC
Confidence            988999999997644

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.72  E-value=5.8e-17  Score=122.51  Aligned_cols=89  Identities=28%  Similarity=0.408  Sum_probs=79.0

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCC---cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGA---HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN   79 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~---~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~   79 (306)
                      .+++.|.|.|.. .+|||+|.++....   ...|++|..|.++|||+++|+|++||+|++|||+++.++++++++.+++.
T Consensus        23 ~~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~  101 (117)
T 2byg_A           23 MTVVEIKLFKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKN  101 (117)
T ss_dssp             EEEEEEEEECBT-TBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             CceEEEEEEeCC-CCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            467889999865 79999999985432   13589999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEEeCC
Q psy8436          80 KDSHVEIVICRNP   92 (306)
Q Consensus        80 ~~~~v~L~v~r~~   92 (306)
                      ++..|+|+|.|..
T Consensus       102 ~g~~v~l~v~R~~  114 (117)
T 2byg_A          102 TSEVVYLKVGKPT  114 (117)
T ss_dssp             CCSEEEEEEEEEE
T ss_pred             CCCeEEEEEEeCC
Confidence            9899999999864

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.72  E-value=3.9e-17  Score=125.60  Aligned_cols=92  Identities=17%  Similarity=0.391  Sum_probs=81.6

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCC-cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCC-CCCHHHHHHHHhcC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLK-GLTIQEAREALNNK   80 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~-~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~-~~~~~~a~~~l~~~   80 (306)
                      .+++.|.|.|....+|||+|.++.... ...|+||..|.++|||+++|+|++||+|++|||+++. +++|++++.+|+.+
T Consensus        24 ~~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~  103 (128)
T 2db5_A           24 RQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQT  103 (128)
T ss_dssp             CEEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHC
T ss_pred             CceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcC
Confidence            467899999987789999999885432 1248999999999999999999999999999999997 99999999999999


Q ss_pred             CCeEEEEEEeCCCC
Q psy8436          81 DSHVEIVICRNPDD   94 (306)
Q Consensus        81 ~~~v~L~v~r~~~~   94 (306)
                      +..|.|+|.|....
T Consensus       104 ~~~v~l~v~r~~~~  117 (128)
T 2db5_A          104 TGSLRLIVAREPVH  117 (128)
T ss_dssp             CSEEEEEEEECCCS
T ss_pred             CCeEEEEEEcCCCC
Confidence            89999999997643

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.72  E-value=9.2e-17  Score=118.23  Aligned_cols=89  Identities=25%  Similarity=0.344  Sum_probs=78.9

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCC---cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGA---HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK   80 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~---~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~   80 (306)
                      ..+.|.|.|.. .+|||+|.++....   ...|++|..|.++|||+++|+|+.||+|++|||+++.++++.++..+++.+
T Consensus         7 ~~~~v~l~~~~-~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   85 (101)
T 2jik_A            7 TEEEINLTRGP-SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA   85 (101)
T ss_dssp             EEEEEEEECCT-TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTC
T ss_pred             ccEEEEEEeCC-CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            57889999965 79999999985432   135899999999999999999999999999999999999999999999988


Q ss_pred             CCeEEEEEEeCCC
Q psy8436          81 DSHVEIVICRNPD   93 (306)
Q Consensus        81 ~~~v~L~v~r~~~   93 (306)
                      +..+.|+|.|...
T Consensus        86 g~~v~l~v~R~~~   98 (101)
T 2jik_A           86 GYAVSLRVQHRLE   98 (101)
T ss_dssp             CSEEEEEEEEESC
T ss_pred             CCeEEEEEEeCCC
Confidence            8899999988653

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.72  E-value=8.5e-17  Score=119.71  Aligned_cols=91  Identities=21%  Similarity=0.321  Sum_probs=79.8

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCC------CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGG------AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEARE   75 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~------~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~   75 (306)
                      |.+.++|.|.|. ..+|||+|.++...      ....|+||..|.++|||+++|.|++||+|++|||+++.+++|.+++.
T Consensus         6 ~~~~~~v~l~k~-~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~   84 (107)
T 1uhp_A            6 SGKSLTLVLHRD-SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVE   84 (107)
T ss_dssp             SSEEEEEEECCS-SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHH
T ss_pred             CcEEEEEEEEeC-CCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            567889999996 78999999987532      12368999999999999999449999999999999999999999999


Q ss_pred             HHhcCCCeEEEEEEeCCC
Q psy8436          76 ALNNKDSHVEIVICRNPD   93 (306)
Q Consensus        76 ~l~~~~~~v~L~v~r~~~   93 (306)
                      +++.++..|.|+|.|...
T Consensus        85 ~~~~~~~~v~l~v~R~~~  102 (107)
T 1uhp_A           85 AFKTAKEPIVVQVLRRTS  102 (107)
T ss_dssp             HHHHCCSSEEEEEEECCS
T ss_pred             HHHcCCCcEEEEEEeCCC
Confidence            999998999999998754

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.72  E-value=1e-16  Score=115.40  Aligned_cols=86  Identities=17%  Similarity=0.377  Sum_probs=78.0

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      +...|+|.|.|.. .+|||++.++...   .|++|..|.++|||+++| |++||+|++|||+++.+++|+++..+|+.++
T Consensus         2 ~~~~r~v~l~k~~-~g~G~~~~~~~~~---~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   76 (90)
T 2he4_A            2 MLRPRLCHLRKGP-QGYGFNLHSDKSR---PGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKARE   76 (90)
T ss_dssp             TTCCEEEEEECBT-TBCCEEEEECSSS---SSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHTTSS
T ss_pred             CCCcEEEEEEECC-CCccEEEEccCCC---CCEEEEEECCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            3467899999965 5999999987653   589999999999999999 9999999999999999999999999999998


Q ss_pred             CeEEEEEEeCC
Q psy8436          82 SHVEIVICRNP   92 (306)
Q Consensus        82 ~~v~L~v~r~~   92 (306)
                      ..+.|+|.|..
T Consensus        77 ~~v~l~v~r~~   87 (90)
T 2he4_A           77 DEARLLVVGPS   87 (90)
T ss_dssp             SEEEEEEECCC
T ss_pred             CcEEEEEEccC
Confidence            89999999865

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.72  E-value=2.5e-17  Score=126.96  Aligned_cols=91  Identities=29%  Similarity=0.362  Sum_probs=78.4

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCc-CCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAH-FSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK   80 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~-~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~   80 (306)
                      +.+++.|.|.|. ..+|||+|.++....+ ..++||..|.++|||+++|.|++||+|++|||+++.+++|++++.+|+.+
T Consensus        27 ~~~~~~v~l~k~-~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~  105 (130)
T 1i16_A           27 EATVCTVTLEKM-SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL  105 (130)
T ss_dssp             SEEEEEEEEETT-SSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTS
T ss_pred             CCcEEEEEEEcC-CCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            457889999995 5799999999865221 25799999999999999955999999999999999999999999999998


Q ss_pred             CC-eEEEEEEeCCC
Q psy8436          81 DS-HVEIVICRNPD   93 (306)
Q Consensus        81 ~~-~v~L~v~r~~~   93 (306)
                      +. .|.|+|.|...
T Consensus       106 ~~~~v~l~v~r~~~  119 (130)
T 1i16_A          106 PDGPVTIVIRRKSL  119 (130)
T ss_dssp             CSSEEEEEEEEESS
T ss_pred             CCceEEEEEEeCCC
Confidence            55 59999988643

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.71  E-value=6.8e-17  Score=122.21  Aligned_cols=91  Identities=21%  Similarity=0.307  Sum_probs=79.6

Q ss_pred             ccEEEEEEeCC------CCceeEEEEecCCCC---cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy8436           4 QFKVFRVVKDD------SNELGIYIERQDGGA---HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAR   74 (306)
Q Consensus         4 ~~~~v~l~r~~------~~~lG~~i~gg~~~~---~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~   74 (306)
                      .++.|.|.|..      +.+|||+|.++....   ...|+||..|.++|||+++|+|++||+|++|||+++.+++|.+++
T Consensus        12 ~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~   91 (117)
T 1ujd_A           12 PHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQ   91 (117)
T ss_dssp             CEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             ceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHH
Confidence            46788899976      579999999885421   123799999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCeEEEEEEeCCCC
Q psy8436          75 EALNNKDSHVEIVICRNPDD   94 (306)
Q Consensus        75 ~~l~~~~~~v~L~v~r~~~~   94 (306)
                      .+|+.++..|.|+|.|....
T Consensus        92 ~~l~~~~~~v~l~v~R~~~~  111 (117)
T 1ujd_A           92 SIISQQSGEAEICVRLDLNM  111 (117)
T ss_dssp             HHHSCCSSCEEEEEESSCCC
T ss_pred             HHHhcCCCEEEEEEEECCcc
Confidence            99999989999999987543

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.71  E-value=1.3e-16  Score=115.11  Aligned_cols=85  Identities=19%  Similarity=0.310  Sum_probs=76.8

Q ss_pred             cccEEEEEEeCCC-CceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           3 KQFKVFRVVKDDS-NELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         3 ~~~~~v~l~r~~~-~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      .+++.|.|.|+.+ .+|||+|.++...   .|++|..|.++|||+++| |+.||+|++|||+++.++++.++..+++..+
T Consensus         5 ~~~~~v~l~k~~~~~~~G~~~~~~~~~---~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   80 (91)
T 1m5z_A            5 VELHKVTLYKDSGMEDFGFSVADGLLE---KGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESG   80 (91)
T ss_dssp             CEEEEEEEECCTTCSSSSEEEEECTTS---SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTST
T ss_pred             cceEEEEEEECCCCCCccEEEEeccCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4678999999765 5899999987543   589999999999999999 9999999999999999999999999999888


Q ss_pred             CeEEEEEEeC
Q psy8436          82 SHVEIVICRN   91 (306)
Q Consensus        82 ~~v~L~v~r~   91 (306)
                      ..+.|+|.|+
T Consensus        81 ~~v~l~v~R~   90 (91)
T 1m5z_A           81 NKLDLVISRN   90 (91)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEeC
Confidence            8999999885

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.71  E-value=1.7e-16  Score=115.87  Aligned_cols=89  Identities=27%  Similarity=0.446  Sum_probs=78.4

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      +.++++|.|.+ ..++|||++.++....  .+++|..|.++|||+++|+|+.||+|++|||+++.+++++++..+|+..+
T Consensus         3 ~~~~~~v~l~~-~~~~lG~~i~~~~~~~--~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g   79 (97)
T 1n7e_A            3 GAIIYTVELKR-YGGPLGITISGTEEPF--DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAG   79 (97)
T ss_dssp             CCCEEEEEEEC-TTSCCCEEEECCSSTT--SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             CceEEEEEEEe-CCCCcCEEEEcccCCC--CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            35678899977 5678999999875432  57999999999999999999999999999999999999999999999888


Q ss_pred             CeEEEEEEeCCC
Q psy8436          82 SHVEIVICRNPD   93 (306)
Q Consensus        82 ~~v~L~v~r~~~   93 (306)
                      ..|.|+|.|...
T Consensus        80 ~~v~l~v~R~~~   91 (97)
T 1n7e_A           80 ETVTLKIKKQTD   91 (97)
T ss_dssp             SEEEEEEECCCC
T ss_pred             CeEEEEEEeCCC
Confidence            899999998754

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.71  E-value=6.5e-17  Score=122.35  Aligned_cols=91  Identities=16%  Similarity=0.274  Sum_probs=80.9

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCC-------cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGA-------HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEARE   75 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~-------~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~   75 (306)
                      ...++|.|.|..+.+|||+|.++....       ...|++|..|.++|||+++|+|++||+|++|||+++.+++|.+++.
T Consensus        14 ~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~   93 (117)
T 2ehr_A           14 GPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVE   93 (117)
T ss_dssp             CCCEEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHH
T ss_pred             CCCEEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            357899999988889999999885421       1358999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCeEEEEEEeCCC
Q psy8436          76 ALNNKDSHVEIVICRNPD   93 (306)
Q Consensus        76 ~l~~~~~~v~L~v~r~~~   93 (306)
                      +++.++..|.|+|.|...
T Consensus        94 ~~~~~g~~v~l~v~r~~~  111 (117)
T 2ehr_A           94 AIKNAGNPVVFIVQSLSS  111 (117)
T ss_dssp             HHHTSCSSEEEEECCBSC
T ss_pred             HHHcCCCeEEEEEEECCC
Confidence            999998999999988654

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.71  E-value=1.2e-16  Score=120.80  Aligned_cols=91  Identities=22%  Similarity=0.366  Sum_probs=80.5

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      ...+.|.|.|+.+.+|||+|.++.... ..++||..|.++|||+++|+|++||+|++|||+++.+++|++++.+|+.++.
T Consensus        14 ~~~~~v~l~k~~~~~lG~~i~~~~~~~-~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~   92 (117)
T 1v62_A           14 SGPLMVEIVKTPGSALGISLTTTSLRN-KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISE   92 (117)
T ss_dssp             SSSEEEEEECCTTCCCCCEEEEECCSS-SCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSS
T ss_pred             CCcEEEEEEcCCCCcccEEEEccCCCC-CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            357889999988889999999875421 1349999999999999999999999999999999999999999999998899


Q ss_pred             eEEEEEEeCCCC
Q psy8436          83 HVEIVICRNPDD   94 (306)
Q Consensus        83 ~v~L~v~r~~~~   94 (306)
                      .|.|+|.|....
T Consensus        93 ~v~l~v~r~~~~  104 (117)
T 1v62_A           93 KVRLEILPVPQS  104 (117)
T ss_dssp             EEEEEECCBTTB
T ss_pred             eEEEEEEECCCC
Confidence            999999987653

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.71  E-value=1.2e-16  Score=122.25  Aligned_cols=87  Identities=23%  Similarity=0.232  Sum_probs=79.4

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      ..++|.|.|....+|||++.++....  .+++|..|.++|||+++|+|+.||+|++|||+++.+++|++++.+++.+++.
T Consensus        19 ~~~~v~l~k~~~~~lG~~i~gg~~~~--~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~   96 (125)
T 3hpk_A           19 VPGKVTLQKDAQNLIGISIGGGAQYC--PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE   96 (125)
T ss_dssp             EEEEEEEECCTTSCCCEEEEECSSCC--SSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSE
T ss_pred             CCeEEEEEeCCCCCcCEEEeccCCCC--CCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            45788999988889999999986543  6899999999999999999999999999999999999999999999999889


Q ss_pred             EEEEEEeCC
Q psy8436          84 VEIVICRNP   92 (306)
Q Consensus        84 v~L~v~r~~   92 (306)
                      |.|+|.|..
T Consensus        97 v~l~v~r~~  105 (125)
T 3hpk_A           97 VTIHYNKLQ  105 (125)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEECC
Confidence            999998843

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.71  E-value=6.5e-17  Score=117.65  Aligned_cols=85  Identities=21%  Similarity=0.497  Sum_probs=76.3

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      -+.+.|.|.|..+++|||++.....    .|++|..|.++|||+++|+|++||+|++|||+++.+++++++..+|+..+.
T Consensus        11 ~~~~~v~l~K~~~~~lG~~l~~~~~----~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~   86 (97)
T 2ejy_A           11 HMVRLIQFEKVTEEPMGICLKLNEK----QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKG   86 (97)
T ss_dssp             --CEEEEEEECSSSCCSEEEEECTT----CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCE
T ss_pred             CccEEEEEEeCCCCCeeEEEEeCCC----CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            3678999999999999999987543    479999999999999999999999999999999999999999999999888


Q ss_pred             eEEEEEEeC
Q psy8436          83 HVEIVICRN   91 (306)
Q Consensus        83 ~v~L~v~r~   91 (306)
                      .+.|+|.+.
T Consensus        87 ~v~L~V~~~   95 (97)
T 2ejy_A           87 MISLKVIPN   95 (97)
T ss_dssp             EEEEEEECC
T ss_pred             eEEEEEEEC
Confidence            899999754

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.71  E-value=3.2e-16  Score=119.59  Aligned_cols=90  Identities=20%  Similarity=0.332  Sum_probs=79.2

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-   80 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-   80 (306)
                      +.+.++|.|.|. ..+|||+|.++....  .|++|..|.++|||+++|+|++||+|++|||+++.+++++++..+|+.+ 
T Consensus        17 ~~~~~~v~l~~~-~~glG~~~~~g~~~~--~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~   93 (123)
T 1ueq_A           17 KGTFLSTTLKKS-NMGFGFTIIGGDEPD--EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVP   93 (123)
T ss_dssp             CSEEEEEEEECC-TTSCSEEEECCSSSS--CCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSC
T ss_pred             CCcEEEEEEEeC-CCceeEEEecccCCC--CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            456778999985 569999999875432  5799999999999999999999999999999999999999999999994 


Q ss_pred             -CCeEEEEEEeCCCC
Q psy8436          81 -DSHVEIVICRNPDD   94 (306)
Q Consensus        81 -~~~v~L~v~r~~~~   94 (306)
                       +..|.|+|.|....
T Consensus        94 ~g~~v~l~v~R~~~~  108 (123)
T 1ueq_A           94 IGQSVNLVLCRGYPL  108 (123)
T ss_dssp             TTCEEEEEEEESCCC
T ss_pred             CCCeEEEEEEeCCCC
Confidence             68999999997644

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.70  E-value=5.6e-17  Score=120.72  Aligned_cols=87  Identities=15%  Similarity=0.311  Sum_probs=78.1

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccC-CCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDG-RFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G-~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      ..+++|.|.|....+|||++.++....  .+++|..|.++|||+++| +|+.||+|++|||+++.+++|.+++.+++.++
T Consensus        16 ~~~~~v~l~~~~~~~~G~~~~gg~~~~--~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~   93 (107)
T 3nfk_A           16 DNLVLIRMKPDENGRFGFNVKGGYDQK--MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASC   93 (107)
T ss_dssp             CCCEEEEECCCTTSCCCEEEEEEGGGT--EEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGG
T ss_pred             CCEEEEEEEcCCCCCCCEEEEccCCCC--CCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence            468999999988789999999885432  479999999999999999 59999999999999999999999999999986


Q ss_pred             C----eEEEEEEeC
Q psy8436          82 S----HVEIVICRN   91 (306)
Q Consensus        82 ~----~v~L~v~r~   91 (306)
                      +    .|.|+|.|+
T Consensus        94 ~~~~~~v~l~v~r~  107 (107)
T 3nfk_A           94 ERHSGELMLLVRPN  107 (107)
T ss_dssp             GSBTTBEEEEEECC
T ss_pred             ccCCcEEEEEEEcC
Confidence            5    899999873

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.70  E-value=2.2e-16  Score=115.06  Aligned_cols=89  Identities=27%  Similarity=0.430  Sum_probs=78.3

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCC-cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~-~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      .+.++|.|.|. ..+|||++.++.... ...|++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++.++
T Consensus         4 g~~~~v~l~k~-~~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g   82 (96)
T 1d5g_A            4 GDIFEVELAKN-DNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG   82 (96)
T ss_dssp             TCEEEEEEECS-SSSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCC
T ss_pred             CCEEEEEEEeC-CCCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            35788999995 579999999874421 2358999999999999999999999999999999999999999999999988


Q ss_pred             CeEEEEEEeCC
Q psy8436          82 SHVEIVICRNP   92 (306)
Q Consensus        82 ~~v~L~v~r~~   92 (306)
                      ..|.|+|.|..
T Consensus        83 ~~v~l~v~R~~   93 (96)
T 1d5g_A           83 QVVHLLLEKGQ   93 (96)
T ss_dssp             SEEEEEEECCS
T ss_pred             CeEEEEEEcCC
Confidence            89999998864

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.70  E-value=1.4e-16  Score=117.93  Aligned_cols=87  Identities=26%  Similarity=0.412  Sum_probs=78.8

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      ..+.+.|.|.|. +.+|||++.++...   .|++|..|.++|||+++|+|+.||+|++|||+++.++++.+++.+++.++
T Consensus         9 ~~~~~~v~l~k~-~~glG~~~~~~~~~---~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   84 (104)
T 3i4w_A            9 PREPRRIVIHRG-STGLGFNIVGGEXG---EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG   84 (104)
T ss_dssp             CSSCEEEEEECB-TTBTSEEEEECC-C---CCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             CCccEEEEEEeC-CCccCEEEECCCCC---CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            456889999996 56999999988654   58999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEeCC
Q psy8436          82 SHVEIVICRNP   92 (306)
Q Consensus        82 ~~v~L~v~r~~   92 (306)
                      ..+.|+|.|..
T Consensus        85 ~~v~l~v~r~~   95 (104)
T 3i4w_A           85 QTVTIIAQYKP   95 (104)
T ss_dssp             SEEEEEEEECH
T ss_pred             CeEEEEEEECc
Confidence            99999999864

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.70  E-value=7e-17  Score=119.17  Aligned_cols=89  Identities=25%  Similarity=0.354  Sum_probs=77.2

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--   80 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--   80 (306)
                      +..++|.|.| ...+|||+|.++.+.. .+.+||..|.+++||+++|+|++||+|++|||+++.+++|++++.+|+.+  
T Consensus         5 ~~~~~v~l~k-~~~glG~~i~gg~~~~-~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~   82 (103)
T 1ufx_A            5 SSGTLVRVKK-SAATLGIAIEGGANTR-QPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFK   82 (103)
T ss_dssp             SSSEEEEEEC-CSSSCCEEEECBTTSS-CSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHH
T ss_pred             CceEEEEEEc-CCCcCCeEEECCCCCC-CCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcc
Confidence            4578889977 5679999999986543 14569999999999999999999999999999999999999999999984  


Q ss_pred             ---CCeEEEEEEeCCC
Q psy8436          81 ---DSHVEIVICRNPD   93 (306)
Q Consensus        81 ---~~~v~L~v~r~~~   93 (306)
                         ++.+.|+|.|...
T Consensus        83 ~~~~~~i~l~v~r~~~   98 (103)
T 1ufx_A           83 TKDRDYIDFLVTEFNS   98 (103)
T ss_dssp             CSSCSEEEEEECCCCC
T ss_pred             cCCCCeEEEEEEEccc
Confidence               6789999988754

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=1.1e-16  Score=115.94  Aligned_cols=87  Identities=30%  Similarity=0.460  Sum_probs=77.3

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      ...|+|.|.|. ..+|||++.++....  .+++|..|.++|||+++|.|++||+|++|||+++.++++.++..+++..+.
T Consensus         4 ~~~r~v~l~k~-~~glG~~l~~~~~~~--~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   80 (93)
T 2dkr_A            4 GSSGVVELPKT-DEGLGFNIMGGKEQN--SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQG   80 (93)
T ss_dssp             SCSCEEEEECC-TTCCCEEEECSSSSS--CCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCS
T ss_pred             CCCEEEEEEeC-CCCccEEEecccCCC--CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            46789999995 579999999875432  589999999999999996699999999999999999999999999998888


Q ss_pred             eEEEEEEeCC
Q psy8436          83 HVEIVICRNP   92 (306)
Q Consensus        83 ~v~L~v~r~~   92 (306)
                      .+.|+|.|..
T Consensus        81 ~v~l~v~r~~   90 (93)
T 2dkr_A           81 SVKLVVRSGP   90 (93)
T ss_dssp             EEEEEECCCC
T ss_pred             cEEEEEEeCC
Confidence            8999998864

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.70  E-value=1.3e-16  Score=118.75  Aligned_cols=90  Identities=29%  Similarity=0.416  Sum_probs=77.9

Q ss_pred             cccEEEEEEeCCCCceeEEEEe---cCCC-CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436           3 KQFKVFRVVKDDSNELGIYIER---QDGG-AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALN   78 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~g---g~~~-~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~   78 (306)
                      -+++.|.|.|. ..+|||+|.+   +... ....|+||..|.++|||+++|+|++||+|++|||+++.++++.+++.+++
T Consensus         8 ~~~~~v~l~k~-~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~   86 (107)
T 1wf8_A            8 LELFPVELEKD-EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR   86 (107)
T ss_dssp             EEEEEEEEECB-TTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHH
T ss_pred             ceEEEEEEEEC-CCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            45678888885 5699999998   3221 12358999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCCC
Q psy8436          79 NKDSHVEIVICRNPD   93 (306)
Q Consensus        79 ~~~~~v~L~v~r~~~   93 (306)
                      .++..|.|+|.|...
T Consensus        87 ~~~~~v~l~v~R~~~  101 (107)
T 1wf8_A           87 NTKGNVRFVIGREKP  101 (107)
T ss_dssp             HCCSEEEEEEEEECC
T ss_pred             cCCCeEEEEEEeCCC
Confidence            999999999998754

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.70  E-value=1.6e-16  Score=118.46  Aligned_cols=83  Identities=19%  Similarity=0.407  Sum_probs=72.5

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ..++.|++.|.   .+|||+|.|+.+.... .++||..|.++|+|+++|+|++||+|++|||+++.+++|++++++|++.
T Consensus        14 ~~~~~v~l~k~---~glG~~i~gg~~~~~~-~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~   89 (109)
T 1wi4_A           14 PAFRVITVTKE---TGLGLKILGGINRNEG-PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRA   89 (109)
T ss_dssp             TTEEEEEECCS---SCCCEEEEECSSSSSC-SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHS
T ss_pred             CcEEEEEEeCC---CccCEEEEeccCCCCC-CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcc
Confidence            45778888886   5799999998875432 3799999999999999999999999999999999999999999999998


Q ss_pred             C---CCceec
Q psy8436         299 F---PQSSKL  305 (306)
Q Consensus       299 ~---~~~~~l  305 (306)
                      +   ...+.|
T Consensus        90 ~~r~~~~~~l   99 (109)
T 1wi4_A           90 KLRSESPWEI   99 (109)
T ss_dssp             CCSSSSCEEE
T ss_pred             ccCCCceEEE
Confidence            8   666554

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.69  E-value=1.9e-16  Score=117.21  Aligned_cols=87  Identities=21%  Similarity=0.325  Sum_probs=78.2

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      ...++|.|.|.++.+|||++.++....  .|++|..|.++|||+++| |++||+|++|||+++.++++++++.+|+. +.
T Consensus        14 ~~~~~v~l~k~~~~~lG~~~~~~~~~~--~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~   89 (104)
T 1wi2_A           14 FLPRIVTLKKPPGAQLGFNIRGGKASQ--LGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKT-AR   89 (104)
T ss_dssp             SCCEEEEECCCTTCCCSEEEECCSSSC--CCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHH-SS
T ss_pred             CCCEEEEEEeCCCCCccEEEEcccCCC--CCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC-CC
Confidence            457899999988889999999875432  589999999999999999 99999999999999999999999999998 68


Q ss_pred             eEEEEEEeCCC
Q psy8436          83 HVEIVICRNPD   93 (306)
Q Consensus        83 ~v~L~v~r~~~   93 (306)
                      .+.|+|.|...
T Consensus        90 ~v~l~v~r~~~  100 (104)
T 1wi2_A           90 EISMRVRFFSG  100 (104)
T ss_dssp             SEEEEEECCCC
T ss_pred             EEEEEEEECCC
Confidence            89999998643

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.69  E-value=7.4e-17  Score=121.87  Aligned_cols=89  Identities=27%  Similarity=0.422  Sum_probs=78.0

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCC-cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~-~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      ..++|.|.|.. .+|||+|.++.... ...|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++.+++
T Consensus        25 ~~~~v~L~k~~-~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~  103 (117)
T 2fne_A           25 QCKSITLERGP-DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKG  103 (117)
T ss_dssp             EEEEEEECCBT-TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             ccEEEEEEeCC-CcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            46889999965 79999999874321 12479999999999999999999999999999999999999999999999888


Q ss_pred             eEEEEEEeCCC
Q psy8436          83 HVEIVICRNPD   93 (306)
Q Consensus        83 ~v~L~v~r~~~   93 (306)
                      .|.|+|.|...
T Consensus       104 ~v~l~v~R~g~  114 (117)
T 2fne_A          104 TVTLMVLSSDE  114 (117)
T ss_dssp             SEEEEEEECSC
T ss_pred             eEEEEEEeCCc
Confidence            89999998753

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.69  E-value=1.5e-16  Score=127.81  Aligned_cols=88  Identities=32%  Similarity=0.453  Sum_probs=76.5

Q ss_pred             cccEEEEEEeCCCCceeEEEEec---CC-CCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQ---DG-GAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALN   78 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg---~~-~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~   78 (306)
                      .++..|.|.|.. .+|||+|.++   .. .....|+||..|.++|||+++|+|++||+|++|||+++.+++|.+++.+|+
T Consensus        79 ~~~~~v~l~k~~-~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~  157 (170)
T 3egg_C           79 LELFPVELEKDS-EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR  157 (170)
T ss_dssp             SEEEEEEEECBT-TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHH
T ss_pred             ceEEEEEEEeCC-CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            356778899865 6999999993   21 112358999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeC
Q psy8436          79 NKDSHVEIVICRN   91 (306)
Q Consensus        79 ~~~~~v~L~v~r~   91 (306)
                      .++..|+|+|.|.
T Consensus       158 ~~g~~v~L~V~R~  170 (170)
T 3egg_C          158 NTKGRVRFMIGRE  170 (170)
T ss_dssp             HCCSEEEEEEEEC
T ss_pred             cCCCEEEEEEEeC
Confidence            9999999999884

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.69  E-value=2.1e-16  Score=115.14  Aligned_cols=88  Identities=16%  Similarity=0.241  Sum_probs=75.9

Q ss_pred             cccEEEEEEeCCCCceeEEEEe-cC----CCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy8436           3 KQFKVFRVVKDDSNELGIYIER-QD----GGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL   77 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~g-g~----~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l   77 (306)
                      ...++|.|.|.+.++|||+|.+ +.    ......+++|..|.++|||+++| |++||+|++|||+++.+++++++..+|
T Consensus         3 ~~~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l   81 (96)
T 2ego_A            3 QQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDII   81 (96)
T ss_dssp             CCEEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CccEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4568999999888899999997 11    11112479999999999999999 999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeC
Q psy8436          78 NNKDSHVEIVICRN   91 (306)
Q Consensus        78 ~~~~~~v~L~v~r~   91 (306)
                      +..++.+.|+|.+.
T Consensus        82 ~~~~~~v~l~v~~~   95 (96)
T 2ego_A           82 KASGNVLRLETLYG   95 (96)
T ss_dssp             HHTTTEEEEEEECC
T ss_pred             HhCCCeEEEEEEEC
Confidence            99988999999763

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.69  E-value=6.6e-17  Score=122.33  Aligned_cols=91  Identities=26%  Similarity=0.430  Sum_probs=81.1

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCC-cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCC-CCCHHHHHHHHhcC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLK-GLTIQEAREALNNK   80 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~-~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~-~~~~~~a~~~l~~~   80 (306)
                      .++++|.|.|.++.+|||+|.++.... ...|++|..|.++|||+++|+|++||+|++|||+++. ++++++++.+++.+
T Consensus        19 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~   98 (117)
T 2o2t_A           19 RHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKA   98 (117)
T ss_dssp             SCEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHC
T ss_pred             CeEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcC
Confidence            468999999988889999999885321 2358999999999999999999999999999999998 99999999999999


Q ss_pred             CCeEEEEEEeCCC
Q psy8436          81 DSHVEIVICRNPD   93 (306)
Q Consensus        81 ~~~v~L~v~r~~~   93 (306)
                      +..|.|+|.|...
T Consensus        99 ~~~v~l~v~R~~~  111 (117)
T 2o2t_A           99 KDTVQLVIARGSL  111 (117)
T ss_dssp             CSEEEEEEESSCC
T ss_pred             CCEEEEEEEeCCc
Confidence            9999999999754

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.69  E-value=1.3e-16  Score=114.90  Aligned_cols=85  Identities=26%  Similarity=0.401  Sum_probs=75.5

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC-
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS-   82 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~-   82 (306)
                      +.++|.|.|.. .+|||++.++....  .+++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++.++. 
T Consensus         2 ~~~~v~l~~~~-~g~G~~~~~g~~~~--~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   78 (90)
T 2q9v_A            2 MEQDIFLWRKE-TGFGFRILGGNEPG--EPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQ   78 (90)
T ss_dssp             EEEEEEEECBT-TBCCEEEEECSSTT--SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHH
T ss_pred             CcEEEEEEECC-CccCEEEEccccCC--CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            46789999965 69999999885433  579999999999999999999999999999999999999999999998743 


Q ss_pred             -eEEEEEEeC
Q psy8436          83 -HVEIVICRN   91 (306)
Q Consensus        83 -~v~L~v~r~   91 (306)
                       .|.|+|.|.
T Consensus        79 ~~v~l~v~R~   88 (90)
T 2q9v_A           79 GHVNLTVRQT   88 (90)
T ss_dssp             TEEEEEEEEC
T ss_pred             CeEEEEEEec
Confidence             899999885

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.69  E-value=2.8e-16  Score=116.69  Aligned_cols=90  Identities=24%  Similarity=0.413  Sum_probs=77.5

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCC-CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGG-AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~-~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      .+..+|.| | ...+|||+|.++... ....|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++.++
T Consensus        10 ~~~~~v~l-~-~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g   87 (106)
T 3axa_A           10 PEIITVTL-K-KQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTS   87 (106)
T ss_dssp             CCEEEEEE-E-CSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             ceEEEEEE-C-CCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45667777 5 567999999987432 22358999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEeCCCC
Q psy8436          82 SHVEIVICRNPDD   94 (306)
Q Consensus        82 ~~v~L~v~r~~~~   94 (306)
                      ..|.|+|.|....
T Consensus        88 ~~v~l~v~R~~~~  100 (106)
T 3axa_A           88 SVVTLEVAKQGAI  100 (106)
T ss_dssp             SEEEEEEECCCSS
T ss_pred             CeEEEEEEeCCcc
Confidence            9999999997654

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.69  E-value=2.1e-16  Score=118.55  Aligned_cols=87  Identities=17%  Similarity=0.357  Sum_probs=77.6

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      .+.+.|.|.|.. .+|||+|.++....  .|++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++.++.
T Consensus        23 ~~~~~v~l~~~~-~glG~~l~~~~~~~--~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~   99 (112)
T 2r4h_A           23 MDFYTVELERGA-KGFGFSLRGGREYN--MDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGR   99 (112)
T ss_dssp             CCEEEEEEECBT-TBTSEEEEECGGGT--CCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTT
T ss_pred             CceEEEEEEcCC-CccCEEEeccccCC--CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            467899999854 68999999875422  589999999999999999999999999999999999999999999999888


Q ss_pred             eEEEEEEeCC
Q psy8436          83 HVEIVICRNP   92 (306)
Q Consensus        83 ~v~L~v~r~~   92 (306)
                      .|.|+|.|..
T Consensus       100 ~v~l~v~R~~  109 (112)
T 2r4h_A          100 RVRLFLKRGE  109 (112)
T ss_dssp             EEEEEEECCE
T ss_pred             eEEEEEEeCC
Confidence            9999998864

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.69  E-value=4.4e-16  Score=112.32  Aligned_cols=84  Identities=20%  Similarity=0.328  Sum_probs=73.9

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      +.|+|.|.|.. .+|||++.++...   .|++|..|.++|||+++| |++||+|++|||+++.++++.++..+++.+++.
T Consensus         3 ~~r~v~l~r~~-~g~G~~~~~~~~~---~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   77 (91)
T 1g9o_A            3 LPRLCCLEKGP-NGYGFHLHGEKGK---LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNA   77 (91)
T ss_dssp             CCEEEEEECBT-TBCCEEEEECTTC---SSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSE
T ss_pred             ccEEEEEEeCC-CcccEEEEecCCC---CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCc
Confidence            46889999965 5999999987653   589999999999999999 999999999999999999999999999998777


Q ss_pred             EEEEEEeCC
Q psy8436          84 VEIVICRNP   92 (306)
Q Consensus        84 v~L~v~r~~   92 (306)
                      +.+++.+..
T Consensus        78 ~~~~~~~r~   86 (91)
T 1g9o_A           78 VRLLVVDPE   86 (91)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEcCC
Confidence            766666543

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=99.69  E-value=1.2e-16  Score=147.90  Aligned_cols=59  Identities=20%  Similarity=0.442  Sum_probs=51.5

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L~v~r~~~   93 (306)
                      .|++|..|.++|||+++| |+.||+|++|||+.+.+  +.+...++..  .++.|.|+|.|+..
T Consensus       282 ~G~~V~~V~~~spA~~aG-L~~GDvI~~vnG~~v~~--~~~l~~~l~~~~~g~~v~l~V~R~g~  342 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELAG-LKAGDIITQINDTKITQ--ATQVKTTISLLRVGSTVKIIVERDNK  342 (451)
T ss_dssp             CCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred             ceEEEEecCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            589999999999999999 99999999999999995  5667677664  47899999999753

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.69  E-value=7.1e-17  Score=119.29  Aligned_cols=89  Identities=24%  Similarity=0.335  Sum_probs=78.3

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-   80 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-   80 (306)
                      +.+.+.|.|.| ...+|||+|.++....  .+++|..|.++|||+++|+|++||+|++|||+++.++++++++.+|+.+ 
T Consensus         7 ~~~~~~v~l~~-~~~g~G~~i~~g~~~~--~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~   83 (103)
T 1uep_A            7 GYKELDVHLRR-MESGFGFRILGGDEPG--QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAA   83 (103)
T ss_dssp             SEEEECCEEES-SSSSCCEEECCCCSTT--SCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEEEe-CCCccCEEEeeecCCC--CCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            34567888999 5679999999875432  6799999999999999999999999999999999999999999999987 


Q ss_pred             -CCeEEEEEEeCCC
Q psy8436          81 -DSHVEIVICRNPD   93 (306)
Q Consensus        81 -~~~v~L~v~r~~~   93 (306)
                       +..|.|+|.|...
T Consensus        84 ~g~~v~l~v~R~~~   97 (103)
T 1uep_A           84 RNGQVNLTVRRKVL   97 (103)
T ss_dssp             HHTEEEEEEEEECC
T ss_pred             CCCcEEEEEEeCCC
Confidence             6899999998753

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.69  E-value=2.3e-16  Score=117.12  Aligned_cols=84  Identities=31%  Similarity=0.489  Sum_probs=71.9

Q ss_pred             EEeCCCCceeEEEEecCCCC---cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEE
Q psy8436          10 VVKDDSNELGIYIERQDGGA---HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEI   86 (306)
Q Consensus        10 l~r~~~~~lG~~i~gg~~~~---~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L   86 (306)
                      +..+...+|||+|.||....   ...|++|..|.++|||+++|+|++||+|++|||+++.+++|.+++.+++.++..|.|
T Consensus         7 ~~~~~~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l   86 (106)
T 4amh_A            7 LVPRGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYL   86 (106)
T ss_dssp             -----CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEE
T ss_pred             cCCCCCCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEE
Confidence            34457789999999996543   124899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCC
Q psy8436          87 VICRNPD   93 (306)
Q Consensus        87 ~v~r~~~   93 (306)
                      +|.|...
T Consensus        87 ~v~R~~~   93 (106)
T 4amh_A           87 KVAKPGS   93 (106)
T ss_dssp             EEECCSS
T ss_pred             EEEeCCC
Confidence            9999754

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.69  E-value=2e-16  Score=121.97  Aligned_cols=89  Identities=20%  Similarity=0.288  Sum_probs=76.1

Q ss_pred             ccEEEEEEeC---------CCCceeEEEEecCCCC-cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHH
Q psy8436           4 QFKVFRVVKD---------DSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA   73 (306)
Q Consensus         4 ~~~~v~l~r~---------~~~~lG~~i~gg~~~~-~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a   73 (306)
                      .+..+.|.|.         .+.+|||+|.++.... ...|+||..|.++|||+++|+|++||+|++|||+++.+++|+++
T Consensus        27 ~i~~v~l~~~~~~~~i~k~~~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~  106 (131)
T 1wfg_A           27 LIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEV  106 (131)
T ss_dssp             EEEEEEEECSCTTSCCCSCSCTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHH
T ss_pred             eeeEEEEeccceeEEEecCCCCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            4456666665         6889999999874332 12489999999999999999999999999999999999999999


Q ss_pred             HHHHhcCC--CeEEEEEEeCC
Q psy8436          74 REALNNKD--SHVEIVICRNP   92 (306)
Q Consensus        74 ~~~l~~~~--~~v~L~v~r~~   92 (306)
                      +.+|+.+.  ..|.|+|.|..
T Consensus       107 ~~~l~~~~~g~~v~l~v~R~g  127 (131)
T 1wfg_A          107 YNIILESKPEPQVELVVSRSG  127 (131)
T ss_dssp             HHHHHHTSSSSEEEEEEEEEC
T ss_pred             HHHHHhcCCCCEEEEEEEcCC
Confidence            99999874  78999999864

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.69  E-value=1.8e-16  Score=111.21  Aligned_cols=73  Identities=21%  Similarity=0.274  Sum_probs=63.3

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      .++.|+|.|.+. ++|||++.++          +|..|.+++||+++| |++||+|++|||+++.+++|+|++++|| ..
T Consensus         4 ~~r~v~l~k~~~-g~~Gf~i~~g----------~I~~v~~gspA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr-~~   70 (82)
T 1r6j_A            4 DPRTITMHKDST-GHVGFIFKNG----------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILS-TS   70 (82)
T ss_dssp             CCEEEEEECCTT-SCCCEEEETT----------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHH-HS
T ss_pred             ceEEEEEEECCC-CCeEEEEECC----------EEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHh-cC
Confidence            467899999863 6799999753          378999999999999 9999999999999999999999999999 45


Q ss_pred             CCceec
Q psy8436         300 PQSSKL  305 (306)
Q Consensus       300 ~~~~~l  305 (306)
                      ...++|
T Consensus        71 g~~V~L   76 (82)
T 1r6j_A           71 GTVVTI   76 (82)
T ss_dssp             CSEEEE
T ss_pred             CCEEEE
Confidence            555554

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.69  E-value=2.1e-16  Score=117.13  Aligned_cols=91  Identities=22%  Similarity=0.368  Sum_probs=79.0

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCC----cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGA----HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL   77 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~----~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l   77 (306)
                      +.+..+|.|.|. ..+|||+|.++....    ...|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+|
T Consensus         5 ~~~~~~v~l~~~-~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l   83 (105)
T 1wha_A            5 SSGRHVACLARS-ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLL   83 (105)
T ss_dssp             CCEEEEEEECCC-TTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHH
T ss_pred             CCeeEEEEEEeC-CCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            346678888885 568999999885421    125899999999999999999999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeCCC
Q psy8436          78 NNKDSHVEIVICRNPD   93 (306)
Q Consensus        78 ~~~~~~v~L~v~r~~~   93 (306)
                      +.++..|.|+|.|...
T Consensus        84 ~~~g~~v~l~v~R~~~   99 (105)
T 1wha_A           84 TAASPTIALLLEREAG   99 (105)
T ss_dssp             TSCCSCEEEEEEECCC
T ss_pred             HcCCCeEEEEEEECCC
Confidence            9988899999999754

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.68  E-value=2.2e-16  Score=119.36  Aligned_cols=85  Identities=29%  Similarity=0.537  Sum_probs=74.0

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.|.|.|... .+|||+|.++.+......|+||..|.++|+|+++|+|++||+|++|||+++.++++++++.+|++.
T Consensus        23 ~~~~~v~l~k~~~-~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~  101 (118)
T 3b76_A           23 MHEKVVNIQKDPG-ESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRT  101 (118)
T ss_dssp             EEEEEEEEECCTT-CCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSC
T ss_pred             CCcEEEEEEeCCC-CccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            5567899988863 789999999987655567999999999999999999999999999999999999999999999987


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      . ..+.|
T Consensus       102 ~-~~v~L  107 (118)
T 3b76_A          102 S-SSIVL  107 (118)
T ss_dssp             C-SEEEE
T ss_pred             C-CeEEE
Confidence            4 44444

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.68  E-value=5.7e-16  Score=115.19  Aligned_cols=92  Identities=17%  Similarity=0.207  Sum_probs=80.7

Q ss_pred             CccccEEEEEEeCCCCceeEEEEecCCCC----cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy8436           1 MEKQFKVFRVVKDDSNELGIYIERQDGGA----HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREA   76 (306)
Q Consensus         1 ~~~~~~~v~l~r~~~~~lG~~i~gg~~~~----~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~   76 (306)
                      |+.+.++|.|.|.++.+|||+|.++....    ...|++|..|.++|||+ +| |++||+|++|||+++.++++.++...
T Consensus         4 ~~~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-ag-l~~GD~I~~vng~~v~~~~~~~~~~~   81 (107)
T 2h2b_A            4 MIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQ-LQENDRVAMVNGVSMDNVEHAFAVQQ   81 (107)
T ss_dssp             CCEEEEEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TT-BCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             ccceeEEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hC-CCCCCEEEEECCEECCCccHHHHHHH
Confidence            46788999999988889999999886532    12589999999999999 87 99999999999999999999999999


Q ss_pred             HhcCCCeEEEEEEeCCCC
Q psy8436          77 LNNKDSHVEIVICRNPDD   94 (306)
Q Consensus        77 l~~~~~~v~L~v~r~~~~   94 (306)
                      ++.++..+.|+|.|....
T Consensus        82 ~~~~g~~v~l~v~R~~~~   99 (107)
T 2h2b_A           82 LRKSGKNAKITIRRKKGG   99 (107)
T ss_dssp             HHTCCSEEEEEEEEESCC
T ss_pred             hhCCCCEEEEEEEECCCC
Confidence            888889999999987543

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.68  E-value=4.7e-16  Score=110.68  Aligned_cols=81  Identities=22%  Similarity=0.361  Sum_probs=71.8

Q ss_pred             EEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeE
Q psy8436           7 VFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHV   84 (306)
Q Consensus         7 ~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v   84 (306)
                      +|.|.|. ..+|||++.++....  .+++|..|.++|||+++|+|+.||+|++|||+++.+++++++..+++.+  +..+
T Consensus         3 ~v~l~k~-~~g~G~~i~~~~~~~--~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v   79 (85)
T 2i04_A            3 HTKLRKS-SRGFGFTVVGGDEPD--EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASV   79 (85)
T ss_dssp             EEEEECB-TTBSSEEEEECCSTT--BCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEE
T ss_pred             EEEEEEC-CCCCCEEEEcccCCC--CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeE
Confidence            5788885 469999999875432  6799999999999999999999999999999999999999999999987  6789


Q ss_pred             EEEEEe
Q psy8436          85 EIVICR   90 (306)
Q Consensus        85 ~L~v~r   90 (306)
                      .|+|.|
T Consensus        80 ~l~v~R   85 (85)
T 2i04_A           80 DLELCR   85 (85)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999865

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.68  E-value=3.1e-16  Score=119.83  Aligned_cols=91  Identities=29%  Similarity=0.510  Sum_probs=80.7

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      ..++++|.|.|. ..+|||+|.++.... ..|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++.++
T Consensus        23 ~~~~~~v~l~k~-~~glG~~l~~~~~~~-~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~  100 (124)
T 2daz_A           23 PGELHIIELEKD-KNGLGLSLAGNKDRS-RMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAP  100 (124)
T ss_dssp             SSEEEEEEEECC-SSCCCEEEECBSSTT-SCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSC
T ss_pred             CCceEEEEEEeC-CCccCEEEeccCCCC-cCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            457889999996 679999999885431 258999999999999999999999999999999999999999999999998


Q ss_pred             CeEEEEEEeCCCC
Q psy8436          82 SHVEIVICRNPDD   94 (306)
Q Consensus        82 ~~v~L~v~r~~~~   94 (306)
                      ..|.|+|.|....
T Consensus       101 ~~v~l~v~R~~~~  113 (124)
T 2daz_A          101 SKVKLVFIRNEDA  113 (124)
T ss_dssp             SEEEEEEEECTTH
T ss_pred             CeEEEEEEeCCCc
Confidence            8999999997643

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.68  E-value=1.8e-16  Score=121.82  Aligned_cols=91  Identities=21%  Similarity=0.385  Sum_probs=79.8

Q ss_pred             ccccEEEEEEeCC-CCceeEEEEecCCCC-------cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHH
Q psy8436           2 EKQFKVFRVVKDD-SNELGIYIERQDGGA-------HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA   73 (306)
Q Consensus         2 ~~~~~~v~l~r~~-~~~lG~~i~gg~~~~-------~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a   73 (306)
                      +..++.|.|.|.. +++|||+|.++....       ...|++|..|.++|||+++|.|++||+|++|||+++.+++|+++
T Consensus        27 ~~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~  106 (128)
T 1nf3_C           27 PETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQV  106 (128)
T ss_dssp             CTTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHH
T ss_pred             CCccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence            5678999999975 589999999874210       11479999999999999999899999999999999999999999


Q ss_pred             HHHHhcCCCeEEEEEEeCC
Q psy8436          74 REALNNKDSHVEIVICRNP   92 (306)
Q Consensus        74 ~~~l~~~~~~v~L~v~r~~   92 (306)
                      +.+|+.++..|.|+|.|..
T Consensus       107 ~~~l~~~~~~v~l~v~r~~  125 (128)
T 1nf3_C          107 TDMMIANSRNLIITVRPAN  125 (128)
T ss_dssp             HHHHHHTTTSEEEEEECCC
T ss_pred             HHHHHcCCCeEEEEEEECC
Confidence            9999998889999999865

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=3.4e-16  Score=118.88  Aligned_cols=90  Identities=24%  Similarity=0.328  Sum_probs=79.3

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCC---cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGA---HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN   79 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~---~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~   79 (306)
                      ...+.|.|.|.. .+|||+|.++....   ...|++|..|.++|||+++|+|++||+|++|||+++.+++|.+++.+++.
T Consensus        16 ~~~~~v~l~r~~-~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~   94 (120)
T 2eno_A           16 VTEEEINLTRGP-SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN   94 (120)
T ss_dssp             EEEEEEEEECCS-SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHH
T ss_pred             CceEEEEEEECC-CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            357889999965 79999999875431   13689999999999999999999999999999999999999999999998


Q ss_pred             CCCeEEEEEEeCCC
Q psy8436          80 KDSHVEIVICRNPD   93 (306)
Q Consensus        80 ~~~~v~L~v~r~~~   93 (306)
                      ++..|.|+|.|...
T Consensus        95 ~g~~v~l~v~R~~~  108 (120)
T 2eno_A           95 AGYAVSLRVQHRLQ  108 (120)
T ss_dssp             HCSEEEEEEEEEEE
T ss_pred             CCCeEEEEEEeCCc
Confidence            88899999998753

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.68  E-value=5e-17  Score=121.78  Aligned_cols=90  Identities=31%  Similarity=0.496  Sum_probs=80.0

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCC-------CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGG-------AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREA   76 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~-------~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~   76 (306)
                      .++.|.|.|..+.+|||+|.++...       ....|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+
T Consensus         9 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~   88 (111)
T 1uju_A            9 GLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQL   88 (111)
T ss_dssp             SSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHH
T ss_pred             ccEEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            4678999998888999999988632       123589999999999999999999999999999999999999999999


Q ss_pred             HhcCCCeEEEEEEeCCC
Q psy8436          77 LNNKDSHVEIVICRNPD   93 (306)
Q Consensus        77 l~~~~~~v~L~v~r~~~   93 (306)
                      ++.++..|.|+|.|...
T Consensus        89 l~~~g~~v~l~v~r~~~  105 (111)
T 1uju_A           89 LRSVGDTLTVLVCDGFE  105 (111)
T ss_dssp             HSSCSSEEEECCCCCCC
T ss_pred             HHcCCCeEEEEEEECCC
Confidence            99998899999988653

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.68  E-value=4.5e-16  Score=111.24  Aligned_cols=83  Identities=16%  Similarity=0.282  Sum_probs=73.6

Q ss_pred             EEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEE
Q psy8436           7 VFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEI   86 (306)
Q Consensus         7 ~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L   86 (306)
                      ++.+.+....+|||++.++....  .|++|..|.++|||+++| |++||+|++|||+++.+++++++..+|+..+..+.|
T Consensus         3 ~~~v~~~~~~~lG~~l~~~~~~~--~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l   79 (87)
T 2pa1_A            3 ALTVDVAGPAPWGFRITGGRDFH--TPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRL   79 (87)
T ss_dssp             EEEEEECSSSCCSEEEEEEGGGT--EEEEEEEECSSSHHHHTT-CCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEE
T ss_pred             EEEEEECCCCccCEEEecccCCC--CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            45566667789999999885432  579999999999999999 999999999999999999999999999998888999


Q ss_pred             EEEeCC
Q psy8436          87 VICRNP   92 (306)
Q Consensus        87 ~v~r~~   92 (306)
                      +|.|..
T Consensus        80 ~v~R~~   85 (87)
T 2pa1_A           80 QLDRIT   85 (87)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            999975

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.68  E-value=5.9e-16  Score=115.72  Aligned_cols=90  Identities=18%  Similarity=0.294  Sum_probs=79.7

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCC-cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~-~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      .+.++|.|.|.. .+|||+|.++.... ...|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++..+
T Consensus         7 ~~~~~v~l~~~~-~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   85 (110)
T 1um1_A            7 GYVFTVELERGP-SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG   85 (110)
T ss_dssp             CCEEEEEEECCT-TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCC
T ss_pred             CcEEEEEEEECC-CccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            467889999965 69999999975432 2368999999999999999999999999999999999999999999999998


Q ss_pred             CeEEEEEEeCCC
Q psy8436          82 SHVEIVICRNPD   93 (306)
Q Consensus        82 ~~v~L~v~r~~~   93 (306)
                      ..+.|+|.|...
T Consensus        86 ~~v~l~v~R~~~   97 (110)
T 1um1_A           86 KKMRFLVAKSDV   97 (110)
T ss_dssp             SEEEEEEECCCH
T ss_pred             CeEEEEEEeCCc
Confidence            899999998753

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.68  E-value=2.7e-16  Score=112.97  Aligned_cols=81  Identities=20%  Similarity=0.315  Sum_probs=70.9

Q ss_pred             EEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEE
Q psy8436           7 VFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEI   86 (306)
Q Consensus         7 ~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L   86 (306)
                      +|.+.  ...+|||+|.++....  .+++|..|.++|||+++| |+.||+|++|||+++.++++.++..+++.++..+.|
T Consensus         6 ~v~~~--~~~~~G~~l~gg~~~~--~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l   80 (89)
T 2q3g_A            6 KVVLE--GPAPWGFRLQGGKDFN--VPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSL   80 (89)
T ss_dssp             EEEEE--SSSCCCEEEEEEGGGT--EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEEE
T ss_pred             EEEEc--CCCcccEEEECcCCCC--CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEE
Confidence            34444  4579999999875432  579999999999999999 999999999999999999999999999988889999


Q ss_pred             EEEeCC
Q psy8436          87 VICRNP   92 (306)
Q Consensus        87 ~v~r~~   92 (306)
                      +|.|..
T Consensus        81 ~v~R~~   86 (89)
T 2q3g_A           81 GLSRAI   86 (89)
T ss_dssp             EEEEEC
T ss_pred             EEEeCC
Confidence            998864

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.67  E-value=9.1e-17  Score=121.92  Aligned_cols=90  Identities=14%  Similarity=0.300  Sum_probs=78.8

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhccc-CCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRD-GRFHVGDELIKVNDKRLKGLTIQEAREALNNK   80 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~-G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~   80 (306)
                      +.+.++|.|.|...++|||+|.++....  .+++|..|.++|||+++ |.|++||+|++|||+++.+++|.+++.+++.+
T Consensus        13 ~~~~~~v~l~k~~~~~~G~~l~gg~~~~--~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~   90 (119)
T 2cs5_A           13 HDNLVLIRMKPDENGRFGFNVKGGYDQK--MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS   90 (119)
T ss_dssp             SSCCEEEEECCCSSSCCSEEEEEEGGGT--EEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHH
T ss_pred             CCCeEEEEEEeCCCCCcCEEEecccCCC--CCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            4578999999988778999999885432  57999999999999999 33999999999999999999999999999988


Q ss_pred             C----CeEEEEEEeCCC
Q psy8436          81 D----SHVEIVICRNPD   93 (306)
Q Consensus        81 ~----~~v~L~v~r~~~   93 (306)
                      +    ..|.|+|.|...
T Consensus        91 ~~~~~~~v~l~v~R~~~  107 (119)
T 2cs5_A           91 CERHSGELMLLVRPNAV  107 (119)
T ss_dssp             HHCCSSCEEEEEECCCC
T ss_pred             cccCCCEEEEEEEcccc
Confidence            4    489999998743

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.67  E-value=8.1e-16  Score=118.28  Aligned_cols=90  Identities=21%  Similarity=0.322  Sum_probs=78.7

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-   80 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-   80 (306)
                      +.+..+|.|.| ...+|||++.++....  .+++|..|.++|||+++|+|+.||+|++|||+++.+++|++++.+|+.+ 
T Consensus        16 ~g~~~~v~l~~-~~~g~G~~i~g~~~~~--~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~   92 (129)
T 2kpk_A           16 KGKFIHTKLRK-SSRGFGFTVVGGDEPD--EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIP   92 (129)
T ss_dssp             CSEEEEEEEEE-CSSCCSEEEEEEEETT--EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSC
T ss_pred             CCcEEEEEEEE-CCCcccEEEeCccCCC--CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            44567889999 4569999999875432  5799999999999999999999999999999999999999999999988 


Q ss_pred             -CCeEEEEEEeCCCC
Q psy8436          81 -DSHVEIVICRNPDD   94 (306)
Q Consensus        81 -~~~v~L~v~r~~~~   94 (306)
                       +..|.|+|.|....
T Consensus        93 ~g~~v~l~v~R~~~~  107 (129)
T 2kpk_A           93 IGASVDLELCRGYPL  107 (129)
T ss_dssp             TTEEEEEEEEECSCC
T ss_pred             CCCeEEEEEEeCCCC
Confidence             67899999997643

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.67  E-value=4.1e-16  Score=113.59  Aligned_cols=87  Identities=20%  Similarity=0.294  Sum_probs=77.5

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      |.+..++.|.+....+|||++.+..     .|++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++.++
T Consensus         6 ~~~~~~v~l~~~~~~glG~~~~~~~-----~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~   80 (96)
T 2qkv_A            6 SLEKFNVDLMKKAGKELGLSLSPNE-----IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGAN   80 (96)
T ss_dssp             CCCCEEEEEECBTTBCCCEEEEECS-----SSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCS
T ss_pred             HCceEEEEEEeCCCCCccEEEEeCC-----CcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            3456788898878889999998722     57999999999999999999999999999999999999999999999998


Q ss_pred             CeEEEEEEeCCC
Q psy8436          82 SHVEIVICRNPD   93 (306)
Q Consensus        82 ~~v~L~v~r~~~   93 (306)
                      +.|.|+|.|...
T Consensus        81 ~~v~l~v~R~~p   92 (96)
T 2qkv_A           81 GKVSMEVTRPKP   92 (96)
T ss_dssp             SEEEEEEECCCC
T ss_pred             CcEEEEEEeCCc
Confidence            899999998643

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.67  E-value=5.1e-16  Score=115.89  Aligned_cols=89  Identities=17%  Similarity=0.291  Sum_probs=78.1

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCC----------cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHH
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGA----------HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA   73 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~----------~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a   73 (306)
                      +.+.|.|.|....+|||+|.++....          ...|++|..|.++|||+++| |+.||+|++|||+++.+++|.++
T Consensus         7 ~~~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~   85 (109)
T 1q3o_A            7 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQV   85 (109)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHH
T ss_pred             CcEEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHH
Confidence            56789999888889999999886531          01279999999999999999 99999999999999999999999


Q ss_pred             HHHHhcCCCeEEEEEEeCCC
Q psy8436          74 REALNNKDSHVEIVICRNPD   93 (306)
Q Consensus        74 ~~~l~~~~~~v~L~v~r~~~   93 (306)
                      ..+++.++..+.|+|.|...
T Consensus        86 ~~~l~~~~~~v~l~v~~~~~  105 (109)
T 1q3o_A           86 VNMIRQGGNTLMVKVVMVTR  105 (109)
T ss_dssp             HHHHHHTTTEEEEEEEEEEC
T ss_pred             HHHHHhCCCEEEEEEEECCC
Confidence            99999888899999988643

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.67  E-value=4.3e-16  Score=113.76  Aligned_cols=89  Identities=26%  Similarity=0.411  Sum_probs=77.2

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCC--cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGA--HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~--~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      +..+|.|.| ...+|||+|.++....  ...|++|..|.++|||+++|+|++||+|++|||+++.+++++++..+|+.++
T Consensus         3 ~~~~v~l~k-~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g   81 (97)
T 2jil_A            3 RTVEVTLHK-EGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG   81 (97)
T ss_dssp             EEEEEEEEC-BTTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             eEEEEEEEe-CCCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            456788888 4679999999885321  1258999999999999999999999999999999999999999999999988


Q ss_pred             CeEEEEEEeCCC
Q psy8436          82 SHVEIVICRNPD   93 (306)
Q Consensus        82 ~~v~L~v~r~~~   93 (306)
                      ..+.|+|.|+..
T Consensus        82 ~~v~l~v~R~~~   93 (97)
T 2jil_A           82 QEAALLIEYDVS   93 (97)
T ss_dssp             SEEEEEEEEECC
T ss_pred             CeEEEEEEeCCC
Confidence            899999999754

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.67  E-value=2.2e-16  Score=119.37  Aligned_cols=89  Identities=20%  Similarity=0.279  Sum_probs=77.9

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCc----CCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAH----FSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALN   78 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~----~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~   78 (306)
                      .+.++|.|.|..+.+|||+|.++.....    ..|++|..|.++|||+ +| |++||+|++|||+++.+++|.+++.+++
T Consensus        13 ~~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~g-L~~GD~I~~Vng~~v~~~~~~~~~~~l~   90 (117)
T 2csj_A           13 WEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQLR   90 (117)
T ss_dssp             EEEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHHH
T ss_pred             ceEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-cc-CCCCCEEEEECCEECCCcCHHHHHHHHh
Confidence            4567899999877899999999865321    3589999999999996 66 9999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCCC
Q psy8436          79 NKDSHVEIVICRNPD   93 (306)
Q Consensus        79 ~~~~~v~L~v~r~~~   93 (306)
                      .++..|.|+|.|...
T Consensus        91 ~~~~~v~l~v~R~~~  105 (117)
T 2csj_A           91 KSGKIAAIVVKRPRK  105 (117)
T ss_dssp             HSCSEEEEEEEEEEE
T ss_pred             cCCCeEEEEEEECCc
Confidence            999999999998643

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.67  E-value=3.2e-16  Score=116.22  Aligned_cols=85  Identities=20%  Similarity=0.306  Sum_probs=76.8

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      +..+|.|.|..+.+|||++.+..     .|++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++..++.
T Consensus         2 ~~~~v~L~k~~~~glG~~i~~~~-----~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~   76 (106)
T 2la8_A            2 EKFNVDLMKKAGKELGLSLSPNE-----IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGK   76 (106)
T ss_dssp             EEEEEEECCBSSSTTCCEEEECS-----SSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSC
T ss_pred             eEEEEEEEeCCCCccCEEEEeCC-----CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCe
Confidence            35678898888899999998722     5799999999999999999999999999999999999999999999999889


Q ss_pred             EEEEEEeCCC
Q psy8436          84 VEIVICRNPD   93 (306)
Q Consensus        84 v~L~v~r~~~   93 (306)
                      |.|+|.|...
T Consensus        77 v~l~v~R~~~   86 (106)
T 2la8_A           77 VSMEVTRPKP   86 (106)
T ss_dssp             EEEEEEECCS
T ss_pred             EEEEEEeCCC
Confidence            9999999754

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.67  E-value=1e-16  Score=122.94  Aligned_cols=89  Identities=28%  Similarity=0.399  Sum_probs=75.5

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCC--CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGG--AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--   80 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~--~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--   80 (306)
                      ...|.|.|....+|||+|.++...  ....++||..|.++|||+++|+|++||+|++|||+++.+++|.+++.+|+.+  
T Consensus        26 ~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~  105 (127)
T 1wg6_A           26 TLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMS  105 (127)
T ss_dssp             EEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhc
Confidence            344555556788999999988532  1124799999999999999999999999999999999999999999999976  


Q ss_pred             -----CCeEEEEEEeCCC
Q psy8436          81 -----DSHVEIVICRNPD   93 (306)
Q Consensus        81 -----~~~v~L~v~r~~~   93 (306)
                           +..|+|+|.|...
T Consensus       106 ~~g~~~~~v~l~v~R~~~  123 (127)
T 1wg6_A          106 MEGNIRGMIQLVILRRSG  123 (127)
T ss_dssp             HHHHHTCEEEEEEEECSC
T ss_pred             cccCCCCEEEEEEEeCCC
Confidence                 7899999999754

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.67  E-value=8.7e-16  Score=112.31  Aligned_cols=89  Identities=24%  Similarity=0.374  Sum_probs=78.0

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      +.++|.|.|. ..+|||++.++.+.. ..|++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++.++..
T Consensus         4 ~~~~v~l~~~-~~~lG~~l~~~~~~~-~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   81 (98)
T 2opg_A            4 CETTIEISKG-RTGLGLSIVGGSDTL-LGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQR   81 (98)
T ss_dssp             EEEEEEEECB-TTBTCEEEEECTTST-TCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred             CEEEEEEEEC-CCcccEEEecCCCCC-CCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            4578999995 569999999875421 14799999999999999999999999999999999999999999999998889


Q ss_pred             EEEEEEeCCCC
Q psy8436          84 VEIVICRNPDD   94 (306)
Q Consensus        84 v~L~v~r~~~~   94 (306)
                      |.|+|.|....
T Consensus        82 v~l~v~R~~~~   92 (98)
T 2opg_A           82 VRLTLYRDEAP   92 (98)
T ss_dssp             EEEEEEECSSC
T ss_pred             EEEEEEcCCCC
Confidence            99999987643

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.67  E-value=5.9e-16  Score=112.79  Aligned_cols=89  Identities=18%  Similarity=0.375  Sum_probs=77.3

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      ..|+|.|.|.. .+|||++.+........|++|..|.++|||+++| |+.||+|++|||+++.+++++++..+++..+..
T Consensus         3 ~~r~v~l~k~~-~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   80 (96)
T 2v90_A            3 KPRCLHLEKGP-QGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQGSC   80 (96)
T ss_dssp             CCEEEEEECBT-TBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTTTE
T ss_pred             CCEEEEEEeCC-CcccEEEEeccCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            46899999965 5999999885432222589999999999999999 999999999999999999999999999998889


Q ss_pred             EEEEEEeCCCC
Q psy8436          84 VEIVICRNPDD   94 (306)
Q Consensus        84 v~L~v~r~~~~   94 (306)
                      +.|+|.|....
T Consensus        81 v~l~v~r~~~~   91 (96)
T 2v90_A           81 VSLTVVDPEAD   91 (96)
T ss_dssp             EEEEEECCCTT
T ss_pred             EEEEEECCCCc
Confidence            99999997643

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.67  E-value=5e-16  Score=117.82  Aligned_cols=91  Identities=20%  Similarity=0.330  Sum_probs=78.3

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      ..++.|.|.|....+|||+|.++... ...|++|..|.++|||+++|+|++||+|++|||+++.+++|.+++.+++.++.
T Consensus        14 ~~~~~v~l~~~~~~~lG~~i~g~~~~-~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~   92 (119)
T 1x6d_A           14 DGIHVTILHKEEGAGLGFSLAGGADL-ENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQARE   92 (119)
T ss_dssp             TTEEEEEEECCTTSCCSEEEECCSSS-SCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTS
T ss_pred             CCeEEEEEEeCCCCccCEEEeCCCCC-CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            46788999998889999999987542 12589999999999999999999999999999999999999999999998865


Q ss_pred             e-EEEEEEeCCCC
Q psy8436          83 H-VEIVICRNPDD   94 (306)
Q Consensus        83 ~-v~L~v~r~~~~   94 (306)
                      . +.|+|.|....
T Consensus        93 ~~~~l~v~R~~~~  105 (119)
T 1x6d_A           93 PRQAVIVTRKLTP  105 (119)
T ss_dssp             SSEEEEEEECCCS
T ss_pred             CeEEEEEEcCCCc
Confidence            4 55778876543

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=3.8e-16  Score=115.55  Aligned_cols=92  Identities=22%  Similarity=0.328  Sum_probs=79.4

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      +.+.+.|.|.+.. .+|||+|.++.......+++|..|.+++||+++|+|+.||+|++|||+++.++++.+++.+++.++
T Consensus         9 ~~~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   87 (104)
T 2djt_A            9 ASGHFSVELVRGY-AGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGG   87 (104)
T ss_dssp             CCCCEEEEEECCS-SSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTC
T ss_pred             CCceEEEEEEeCC-CCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4567889999965 699999998743211257999999999999999999999999999999999999999999999888


Q ss_pred             CeEEEEEEeCCCC
Q psy8436          82 SHVEIVICRNPDD   94 (306)
Q Consensus        82 ~~v~L~v~r~~~~   94 (306)
                      ..|.|+|.|....
T Consensus        88 ~~v~l~v~R~g~~  100 (104)
T 2djt_A           88 PQLHLVIRRPLSG  100 (104)
T ss_dssp             SEEEEEECCCCCC
T ss_pred             CeEEEEEEECCCC
Confidence            8999999887543

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.67  E-value=6.3e-16  Score=111.46  Aligned_cols=83  Identities=16%  Similarity=0.367  Sum_probs=73.7

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      ..|+|.|.|.. .+|||.+.+.      .+++|..|.++|||+++| |+.||+|++|||+++.++++.++..+++.++..
T Consensus         3 ~~r~v~l~~~~-~g~G~~l~~~------~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~   74 (91)
T 2f5y_A            3 RYRQITIPRGK-DGFGFTICCD------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSE   74 (91)
T ss_dssp             EEEEEEEECBT-TBTSEEEECS------SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSE
T ss_pred             ceEEEEEEeCC-CCccEEEecC------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            46899999954 6899999753      469999999999999999 999999999999999999999999999998889


Q ss_pred             EEEEEEeCCCC
Q psy8436          84 VEIVICRNPDD   94 (306)
Q Consensus        84 v~L~v~r~~~~   94 (306)
                      +.|+|.|....
T Consensus        75 v~l~v~R~~~~   85 (91)
T 2f5y_A           75 IILLVWRMVPQ   85 (91)
T ss_dssp             EEEEEEECC--
T ss_pred             EEEEEEeCCCC
Confidence            99999997644

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.66  E-value=9.1e-16  Score=115.23  Aligned_cols=86  Identities=24%  Similarity=0.466  Sum_probs=77.3

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      ..+++|.|.|...++|||.+.+..     .+++|..|.++|||+++|.|+.||+|++|||+.+.+++++++..+|+..++
T Consensus        24 ~~~~~v~l~k~~~~~lG~~i~~~~-----~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~   98 (113)
T 1va8_A           24 ETVKIVRIEKARDIPLGATVRNEM-----DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHG   98 (113)
T ss_dssp             EECEEEEEEECTTCCCCEEEEECS-----SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCE
T ss_pred             CceEEEEEEeCCCCceeEEEEeCC-----CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            468899999988779999998762     479999999999999999339999999999999999999999999998888


Q ss_pred             eEEEEEEeCCC
Q psy8436          83 HVEIVICRNPD   93 (306)
Q Consensus        83 ~v~L~v~r~~~   93 (306)
                      .|.|+|.|...
T Consensus        99 ~v~l~v~r~~~  109 (113)
T 1va8_A           99 TLTFVLIPSSG  109 (113)
T ss_dssp             EEEEEEECCCC
T ss_pred             eEEEEEEECCc
Confidence            89999998653

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.66  E-value=3.2e-16  Score=117.76  Aligned_cols=92  Identities=30%  Similarity=0.402  Sum_probs=79.2

Q ss_pred             ccccEEEEEEeCCCCceeEEEEe---cCCC-CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIER---QDGG-AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL   77 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~g---g~~~-~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l   77 (306)
                      +-++..|.|.|. ..+|||+|.+   +... ....|++|..|.++|||+++|+|+.||+|++|||+++.++++.+++.++
T Consensus         2 ~~~~~~v~l~k~-~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~   80 (113)
T 2g5m_B            2 HMELFPVELEKD-SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVL   80 (113)
T ss_dssp             CCEEEEEECCCC-SSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHH
T ss_pred             CeEEEEEEEEeC-CCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            446778888885 5799999998   3221 1235899999999999999999999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeCCCC
Q psy8436          78 NNKDSHVEIVICRNPDD   94 (306)
Q Consensus        78 ~~~~~~v~L~v~r~~~~   94 (306)
                      +.++..|.|+|.|....
T Consensus        81 ~~~g~~v~l~v~R~~~~   97 (113)
T 2g5m_B           81 RNTKGRVRFMIGRERPG   97 (113)
T ss_dssp             HHSCSSCEEEEEECCCC
T ss_pred             hcCCCeEEEEEEeCCCC
Confidence            99999999999997654

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.66  E-value=5.1e-16  Score=111.18  Aligned_cols=77  Identities=19%  Similarity=0.475  Sum_probs=68.6

Q ss_pred             EEEEe-CCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEE
Q psy8436           8 FRVVK-DDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEI   86 (306)
Q Consensus         8 v~l~r-~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L   86 (306)
                      |.|.+ ...+.|||.+.+        |+||..|.++|||+++|+|+.||+|++|||+++.+++|++++.+|+.+++.|+|
T Consensus         4 v~l~~~~~~~~~G~~~~~--------gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L   75 (88)
T 3e17_A            4 VLLMKSRANEEYGLRLGS--------QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQL   75 (88)
T ss_dssp             EEEECBTTBCCCCEEEEE--------EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEE
T ss_pred             EEEEeCCCCCCCCEEEeC--------CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            44444 566799999974        699999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCC
Q psy8436          87 VICRNP   92 (306)
Q Consensus        87 ~v~r~~   92 (306)
                      ++.+..
T Consensus        76 ~v~~~~   81 (88)
T 3e17_A           76 VVLRDL   81 (88)
T ss_dssp             EECCC-
T ss_pred             EEeCCC
Confidence            998754

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.66  E-value=7.7e-16  Score=115.27  Aligned_cols=86  Identities=27%  Similarity=0.555  Sum_probs=77.1

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      ..+.|.|.|. +.+|||+|.++..    .|++|..|.++|||+++|+|+.||+|++|||+++.++++.++..+++.++..
T Consensus        15 ~~~~v~l~~~-~~~lG~~l~~~~~----~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~   89 (111)
T 2dlu_A           15 HVEEVELIND-GSGLGFGIVGGKT----SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNS   89 (111)
T ss_dssp             EEEEEEEECC-SSCCCEEEECCSS----SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCSE
T ss_pred             ceEEEEEEeC-CCccCEEEeccCC----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            5688999984 5799999997654    4799999999999999999999999999999999999999999999988889


Q ss_pred             EEEEEEeCCCC
Q psy8436          84 VEIVICRNPDD   94 (306)
Q Consensus        84 v~L~v~r~~~~   94 (306)
                      |.|+|.|....
T Consensus        90 v~l~v~R~~~~  100 (111)
T 2dlu_A           90 VRMLVARDPAG  100 (111)
T ss_dssp             EEEEEEESCTT
T ss_pred             EEEEEEeCCCC
Confidence            99999987544

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.66  E-value=1.6e-15  Score=116.66  Aligned_cols=93  Identities=23%  Similarity=0.373  Sum_probs=80.9

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCC---cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGA---HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALN   78 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~---~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~   78 (306)
                      +.+.+.|.|.+....+|||++.++....   ...|++|..|.++|||+++|+|++||+|++|||+++.+++++++..+|+
T Consensus        13 ~~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~   92 (129)
T 2dmz_A           13 LFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLR   92 (129)
T ss_dssp             CEEEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHH
T ss_pred             CCcEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3467788897777889999999875422   1358999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCCCC
Q psy8436          79 NKDSHVEIVICRNPDD   94 (306)
Q Consensus        79 ~~~~~v~L~v~r~~~~   94 (306)
                      ..+..|.|+|.|....
T Consensus        93 ~~~~~v~l~v~R~~~~  108 (129)
T 2dmz_A           93 NAGQVVHLTLVRRKTS  108 (129)
T ss_dssp             HCCSSEEEEEEEESSS
T ss_pred             cCCCeEEEEEEeCCcc
Confidence            9888999999997643

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.66  E-value=4.5e-16  Score=115.99  Aligned_cols=90  Identities=27%  Similarity=0.427  Sum_probs=79.0

Q ss_pred             cccEEEEEEeCCCCceeEEEE-----ecCCCC-cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy8436           3 KQFKVFRVVKDDSNELGIYIE-----RQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREA   76 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~-----gg~~~~-~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~   76 (306)
                      .+.++|.|.|. +.+|||+|.     ++.... ...|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+
T Consensus         8 ~~~~~v~l~k~-~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   86 (108)
T 1q7x_A            8 GDIFEVELAKN-DNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVET   86 (108)
T ss_dssp             SSEEEEEEESS-SCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHH
T ss_pred             CcEEEEEEEEC-CCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            46788999995 579999999     764321 23689999999999999999999999999999999999999999999


Q ss_pred             HhcCCCeEEEEEEeCCC
Q psy8436          77 LNNKDSHVEIVICRNPD   93 (306)
Q Consensus        77 l~~~~~~v~L~v~r~~~   93 (306)
                      ++.++..|.|+|.|...
T Consensus        87 ~~~~g~~v~l~v~R~~~  103 (108)
T 1q7x_A           87 LRNTGQVVHLLLEKGQS  103 (108)
T ss_dssp             HHHTTSEEEEEEECCCC
T ss_pred             HHcCCCeEEEEEEeCCc
Confidence            99999999999998754

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=2.8e-16  Score=113.26  Aligned_cols=84  Identities=24%  Similarity=0.383  Sum_probs=76.0

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      ++.+|.|.|.|..+.+|||++.+..     .+++|..|.++|||+++|.|++||+|++|||+++ +.+++++..+|+..+
T Consensus         4 ~~~~r~v~l~k~~~~~lG~~i~~~~-----~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~   77 (91)
T 2e7k_A            4 GSSGRMVGIRKTAGEHLGVTFRVEG-----GELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNAS   77 (91)
T ss_dssp             CCCSCBCCBCCCTTCCCCEEEEESS-----SSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCC
T ss_pred             CCCcEEEEEEECCCCcEeEEEEecC-----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCC
Confidence            4567889999888899999998732     5799999999999999888999999999999999 889999999999988


Q ss_pred             CeEEEEEEeC
Q psy8436          82 SHVEIVICRN   91 (306)
Q Consensus        82 ~~v~L~v~r~   91 (306)
                      +.|.|+|.|.
T Consensus        78 ~~v~l~v~~~   87 (91)
T 2e7k_A           78 GSVILKILSG   87 (91)
T ss_dssp             SSBCEEEECC
T ss_pred             CeEEEEEEEC
Confidence            8999999875

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.65  E-value=5.9e-16  Score=114.93  Aligned_cols=84  Identities=15%  Similarity=0.302  Sum_probs=77.3

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV   84 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v   84 (306)
                      .|+|.|.|.++.+|||.+..+...   .|++|..|.++|||+++| |+.||+|++|||+++.+++|.++..+++.++..|
T Consensus         2 ~r~v~l~~~~~~~~G~~l~~~~~~---~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v   77 (106)
T 3ngh_A            2 PRESKLSKQEGQNYGFFLRIEKDT---DGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSV   77 (106)
T ss_dssp             CEEEEEECCTTCCCCCEEECCTTC---CSCEEECCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEE
T ss_pred             CEEEEEEeCCCCeeCEEEEEEeCC---CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEE
Confidence            478999999889999999977544   589999999999999999 9999999999999999999999999999889999


Q ss_pred             EEEEEeCC
Q psy8436          85 EIVICRNP   92 (306)
Q Consensus        85 ~L~v~r~~   92 (306)
                      .|+|.|..
T Consensus        78 ~l~v~r~~   85 (106)
T 3ngh_A           78 TLLVLDGD   85 (106)
T ss_dssp             EEEEECHH
T ss_pred             EEEEEECC
Confidence            99999864

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.65  E-value=9.1e-16  Score=114.29  Aligned_cols=85  Identities=28%  Similarity=0.407  Sum_probs=73.4

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCC-CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPK-GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~-~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      ..++.|.|.|.+  .+|||+|.++.+... ...|+||..|.++|||+++|+|++||+|++|||+++.+++|++++.+|+.
T Consensus        14 ~~~~~v~l~k~~--~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   91 (108)
T 2d92_A           14 PEVKIVELVKDC--KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKA   91 (108)
T ss_dssp             SSCEEEEEEECS--SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHH
T ss_pred             CceEEEEEEECC--CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            456789999995  689999998765221 23689999999999999999999999999999999999999999999999


Q ss_pred             cCCCceec
Q psy8436         298 IFPQSSKL  305 (306)
Q Consensus       298 ~~~~~~~l  305 (306)
                      .+.+.+.|
T Consensus        92 ~~~~~v~l   99 (108)
T 2d92_A           92 VPPGLVHL   99 (108)
T ss_dssp             SCSEEEEE
T ss_pred             CCCCeEEE
Confidence            87766655

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.65  E-value=1.7e-16  Score=114.44  Aligned_cols=85  Identities=18%  Similarity=0.355  Sum_probs=73.7

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      ..|+|.|.|... +|||++.+....   .|++|..|.++|||+++| |++||+|++|||+++.+++++++..+|+.++..
T Consensus         3 ~pr~v~l~k~~~-~~G~~l~~~~~~---~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   77 (91)
T 2vsp_A            3 KPKLCRLAKGEN-GYGFHLNAIRGL---PGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKN   77 (91)
T ss_dssp             CEEEEEEECBTT-BTSCCCBCCTTC---SCCBC-CCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHTTSCSE
T ss_pred             CcEEEEEEeCCC-cccEEEEeccCC---CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            468999999665 899999876543   579999999999999999 999999999999999999999999999998889


Q ss_pred             EEEEEEeCCC
Q psy8436          84 VEIVICRNPD   93 (306)
Q Consensus        84 v~L~v~r~~~   93 (306)
                      +.|+|.|...
T Consensus        78 v~l~v~r~~~   87 (91)
T 2vsp_A           78 VTLLVCGKKA   87 (91)
T ss_dssp             EEEEEEC---
T ss_pred             EEEEEEeCCc
Confidence            9999998653

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.65  E-value=1.1e-15  Score=113.85  Aligned_cols=92  Identities=22%  Similarity=0.399  Sum_probs=78.6

Q ss_pred             ccccEEEEEE-eCCCCceeEEEEecCCCC---cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy8436           2 EKQFKVFRVV-KDDSNELGIYIERQDGGA---HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL   77 (306)
Q Consensus         2 ~~~~~~v~l~-r~~~~~lG~~i~gg~~~~---~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l   77 (306)
                      |.+...|.|. +....+|||++.++....   ...|++|..|.++|||+++|+|++||+|++|||+++.++++.++..++
T Consensus        10 ~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l   89 (108)
T 2jre_A           10 GFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVL   89 (108)
T ss_dssp             SCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHH
T ss_pred             CcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            3456778886 357789999999874322   235899999999999999999999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeCCC
Q psy8436          78 NNKDSHVEIVICRNPD   93 (306)
Q Consensus        78 ~~~~~~v~L~v~r~~~   93 (306)
                      +..+..|.|+|.|...
T Consensus        90 ~~~g~~v~l~v~R~~~  105 (108)
T 2jre_A           90 RNAGNPVRLLLIRRLP  105 (108)
T ss_dssp             HHHCSEEEEEEEECCC
T ss_pred             HcCCCeEEEEEEeCCc
Confidence            9888899999998753

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.65  E-value=8.8e-16  Score=109.96  Aligned_cols=83  Identities=16%  Similarity=0.299  Sum_probs=72.3

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV   84 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v   84 (306)
                      ...|.| + ...+|||++.++....  .+++|..|.++|||+++| |+.||+|++|||+++.++++.++..+++.++..+
T Consensus         4 ~~~v~l-~-~~~~~G~~l~~g~~~~--~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v   78 (88)
T 2uzc_A            4 NYSVSL-V-GPAPWGFRLQGGKDFN--MPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSL   78 (88)
T ss_dssp             EEEEEE-E-SSSCCCEEEEEEGGGT--EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred             EEEEEE-c-CCCcccEEEECcCCCC--CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            345666 3 4569999999875432  579999999999999999 9999999999999999999999999999888899


Q ss_pred             EEEEEeCC
Q psy8436          85 EIVICRNP   92 (306)
Q Consensus        85 ~L~v~r~~   92 (306)
                      .|+|.|..
T Consensus        79 ~l~v~R~g   86 (88)
T 2uzc_A           79 NMTLQRES   86 (88)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEeCC
Confidence            99998864

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.65  E-value=7.6e-16  Score=111.94  Aligned_cols=85  Identities=22%  Similarity=0.354  Sum_probs=74.5

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      +.|+|.|.|. ..+|||++.++...   .+++|..|.++|||+++| |+.||+|++|||+++.+++|+++..+|+.++..
T Consensus         5 ~~r~v~l~~~-~~~~G~~l~~~~~~---~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   79 (95)
T 3r68_A            5 QPRVVVIKKG-SNGYGFYLRAGPEQ---KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQ   79 (95)
T ss_dssp             CCEEEEEECB-TTBCSCEEEEC--C---CSEEEECCCTTSHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTTTE
T ss_pred             CcEEEEEecC-CCcccEEEEecCCC---CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            5688999994 57999999987554   479999999999999999 999999999999999999999999999999889


Q ss_pred             EEEEEEeCCC
Q psy8436          84 VEIVICRNPD   93 (306)
Q Consensus        84 v~L~v~r~~~   93 (306)
                      +.+++.|...
T Consensus        80 ~~~~~~r~~~   89 (95)
T 3r68_A           80 TTLLVLDKEL   89 (95)
T ss_dssp             EEEEEEECC-
T ss_pred             EEEEEECCcc
Confidence            8888887653

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=99.65  E-value=1.9e-16  Score=135.40  Aligned_cols=90  Identities=30%  Similarity=0.334  Sum_probs=81.0

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      .+.++|.|.|..+++|||+|.|+....  .|+||..|.++|||++++.|++||+|++|||+++.+++|.+++.+|+..++
T Consensus        76 ~~~r~V~L~k~~~~glGf~I~gg~d~~--~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~  153 (263)
T 1z87_A           76 LQRRRVTVRKADAGGLGISIKGGRENK--MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGK  153 (263)
T ss_dssp             CSSEEECCCTTTTCCCCCEEEEETTTT--EEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCS
T ss_pred             CccEEEEEEeCCCCCEeEEEeeccCCC--CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCC
Confidence            468999999988899999999986543  589999999999999953399999999999999999999999999999999


Q ss_pred             eEEEEEEeCCCC
Q psy8436          83 HVEIVICRNPDD   94 (306)
Q Consensus        83 ~v~L~v~r~~~~   94 (306)
                      .|.|+|.|....
T Consensus       154 ~V~L~V~R~~~~  165 (263)
T 1z87_A          154 EVVLEVKYMKEV  165 (263)
T ss_dssp             CCCEEEECCSSS
T ss_pred             eEEEEEEeCccc
Confidence            999999997654

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.65  E-value=2.2e-16  Score=119.85  Aligned_cols=85  Identities=39%  Similarity=0.669  Sum_probs=69.1

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ..++.|.|.|.+. .+|||+|.++.+.+.+..|+||..|.++|||+++|+|++||+|++|||+++.+++|.+++.+|+..
T Consensus        23 ~~~~~v~l~k~~~-~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~  101 (120)
T 2iwo_A           23 MGLRTVEMKKGPT-DSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNA  101 (120)
T ss_dssp             --CEEEEEEC-----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHC
T ss_pred             CCcEEEEEEcCCC-CCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            4568899999863 689999999876544346899999999999999966999999999999999999999999999987


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      ... +.|
T Consensus       102 ~~~-v~l  107 (120)
T 2iwo_A          102 SGS-IEM  107 (120)
T ss_dssp             CSE-EEE
T ss_pred             CCe-EEE
Confidence            543 443

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.65  E-value=2.1e-15  Score=109.59  Aligned_cols=84  Identities=26%  Similarity=0.389  Sum_probs=72.0

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCC------CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGG------AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALN   78 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~------~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~   78 (306)
                      ..+|.+.+.+  +|||+|.++...      ....|++|..|.++|||++ | |++||+|++|||+++.++++.+++.+++
T Consensus         4 ~~~v~l~~~~--~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~   79 (95)
T 1mfg_A            4 EIRVRVEKDP--ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLK   79 (95)
T ss_dssp             EEEEEEECSS--SCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCBHHHHHHHHH
T ss_pred             EEEEEECCCC--CCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-C-CCCCCEEEEECCEEcCCCCHHHHHHHhh
Confidence            4567777743  899999997531      1235899999999999999 8 9999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCC
Q psy8436          79 NKDSHVEIVICRNP   92 (306)
Q Consensus        79 ~~~~~v~L~v~r~~   92 (306)
                      .++..+.|+|.|..
T Consensus        80 ~~~~~v~l~v~R~~   93 (95)
T 1mfg_A           80 TFQNTVELIIVREV   93 (95)
T ss_dssp             HCCSEEEEEEEEEC
T ss_pred             cCCCeEEEEEEeCC
Confidence            88899999999864

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.64  E-value=2.4e-15  Score=113.16  Aligned_cols=91  Identities=16%  Similarity=0.239  Sum_probs=78.1

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCc-----CCCeEEEEeCCCChhcc-cCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAH-----FSPYLISHIEPGGAIHR-DGRFHVGDELIKVNDKRLKGLTIQEAREA   76 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~-----~~gi~V~~V~~gs~A~~-~G~L~~GD~Il~VNG~~l~~~~~~~a~~~   76 (306)
                      -+.++|.|.|....+|||+|.++.....     ..+++|..|.++|||++ +| |++||+|++|||+++.+++|+++..+
T Consensus         9 ~~~~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~ag-L~~GD~I~~ing~~v~~~~~~~~~~~   87 (114)
T 1uew_A            9 LQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK-LKVGDRILAVNGQSIINMPHADIVKL   87 (114)
T ss_dssp             CCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSS-CCTTCBEEEETTBCTTTSCHHHHHHH
T ss_pred             ccceEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCC-CCCCCEEEEECCEECCCCCHHHHHHH
Confidence            3568899999888899999998743211     12579999999999999 77 99999999999999999999999999


Q ss_pred             HhcCCCeEEEEEEeCCCC
Q psy8436          77 LNNKDSHVEIVICRNPDD   94 (306)
Q Consensus        77 l~~~~~~v~L~v~r~~~~   94 (306)
                      |+..+..|.|+|.|....
T Consensus        88 l~~~g~~v~l~v~r~~~~  105 (114)
T 1uew_A           88 IKDAGLSVTLRIIPQEEL  105 (114)
T ss_dssp             HHHTTTEEEEEECCCSCC
T ss_pred             HHcCCCeEEEEEEeCCcC
Confidence            999888999999987543

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.64  E-value=4.4e-16  Score=115.95  Aligned_cols=85  Identities=29%  Similarity=0.574  Sum_probs=72.1

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .++++|.|.|.. ..+|||++.++.+.. ...|+||..|.++|||+++|+|++||+|++|||+++.+++|++++.+|++.
T Consensus         4 ~~~~~v~l~k~~-~~~lG~~i~g~~~~~-~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   81 (108)
T 3cbz_A            4 MNIITVTLNMEK-YNFLGISIVGQSNER-GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDI   81 (108)
T ss_dssp             CCEEEEEECHHH-HCCCCEEEEEECSST-TCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHH
T ss_pred             ceEEEEEEEeCC-CCccCEEEEcCcCCC-CCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            356789998754 268999999976532 236999999999999999999999999999999999999999999999998


Q ss_pred             --CCCceec
Q psy8436         299 --FPQSSKL  305 (306)
Q Consensus       299 --~~~~~~l  305 (306)
                        +.+.+.|
T Consensus        82 ~~~~~~v~l   90 (108)
T 3cbz_A           82 VHKPGPIVL   90 (108)
T ss_dssp             HTSSSCEEE
T ss_pred             ccCCCeEEE
Confidence              5555654

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.64  E-value=1.6e-15  Score=115.01  Aligned_cols=88  Identities=25%  Similarity=0.415  Sum_probs=78.9

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      ..+.++|.|.|.. .+|||++.++...   .|++|..|.++|||+++|+|+.||+|++|||+++.++++.++..+++.++
T Consensus        12 ~~~~~~v~l~k~~-~glG~~l~~~~~~---~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   87 (119)
T 1tp5_A           12 PREPRRIVIHRGS-TGLGFNIVGGEDG---EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG   87 (119)
T ss_dssp             CCSCEEEEEECTT-SCCCEEEEECGGG---CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             CCccEEEEEEECC-CCccEEEecCCCC---CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4578999999954 6899999987543   58999999999999999999999999999999999999999999999988


Q ss_pred             CeEEEEEEeCCC
Q psy8436          82 SHVEIVICRNPD   93 (306)
Q Consensus        82 ~~v~L~v~r~~~   93 (306)
                      ..+.|+|.|...
T Consensus        88 ~~v~l~v~r~~~   99 (119)
T 1tp5_A           88 QTVTIIAQYKPE   99 (119)
T ss_dssp             SEEEEEEEECHH
T ss_pred             CeEEEEEEECCc
Confidence            999999998653

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.64  E-value=9.5e-16  Score=109.76  Aligned_cols=78  Identities=26%  Similarity=0.359  Sum_probs=67.7

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP  300 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~  300 (306)
                      .+.|.|.|.++ .+|||++.+..+     .+++|..|.++|||+++++|++||+|++|||+++.+++|++++++|++.++
T Consensus         2 ~r~V~l~K~~~-~~lG~~i~~~~~-----~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~   75 (88)
T 1kwa_A            2 SRLVQFQKNTD-EPMGITLKMNEL-----NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRG   75 (88)
T ss_dssp             CEEEEEEECSS-SCCCEEEECSCG-----GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCE
T ss_pred             eEEEEEEeCCC-CceeEEEEeCCC-----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC
Confidence            46799999974 789999987432     489999999999999965699999999999999999999999999999876


Q ss_pred             Cceec
Q psy8436         301 QSSKL  305 (306)
Q Consensus       301 ~~~~l  305 (306)
                       .+.|
T Consensus        76 -~v~l   79 (88)
T 1kwa_A           76 -SITF   79 (88)
T ss_dssp             -EEEE
T ss_pred             -cEEE
Confidence             5544

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.64  E-value=2.4e-15  Score=109.47  Aligned_cols=84  Identities=33%  Similarity=0.618  Sum_probs=73.0

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .+.++|.|.|..  .+|||++.++.+......|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+|+. 
T Consensus         4 g~~~~v~l~k~~--~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-   80 (96)
T 1d5g_A            4 GDIFEVELAKND--NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-   80 (96)
T ss_dssp             TCEEEEEEECSS--SSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHS-
T ss_pred             CCEEEEEEEeCC--CCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-
Confidence            567889999884  78999999988765545699999999999999998899999999999999999999999999987 


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      .+..+.|
T Consensus        81 ~g~~v~l   87 (96)
T 1d5g_A           81 TGQVVHL   87 (96)
T ss_dssp             CCSEEEE
T ss_pred             CCCeEEE
Confidence            4455443

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=1.6e-15  Score=111.38  Aligned_cols=88  Identities=24%  Similarity=0.385  Sum_probs=78.0

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      ..+++|.|.|.....|||++.+.....  .|++|..|.++|||+++| |++||+|++|||+++.++++.+++..++. +.
T Consensus         9 ~~~~~v~l~~~~~~~lG~~~~~~~~~~--~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~   84 (100)
T 2eeh_A            9 DIIHSVRVEKSPAGRLGFSVRGGSEHG--LGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTS-SS   84 (100)
T ss_dssp             CEECCEEECCCSSSSCSEEEECCTTTT--CCEEEEEECTTSHHHHHT-CCSSCEEEEETTEECSSCCHHHHHHHHHS-CS
T ss_pred             CeEEEEEEEECCCCCccEEEEccccCC--CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC-CC
Confidence            467889999988778999999875422  589999999999999999 99999999999999999999999999988 68


Q ss_pred             eEEEEEEeCCCC
Q psy8436          83 HVEIVICRNPDD   94 (306)
Q Consensus        83 ~v~L~v~r~~~~   94 (306)
                      .+.|+|.|....
T Consensus        85 ~v~l~v~R~g~~   96 (100)
T 2eeh_A           85 RLHMMVRRMGSG   96 (100)
T ss_dssp             SEEEEEEECSCC
T ss_pred             EEEEEEEECCcC
Confidence            999999997643

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.64  E-value=1.4e-15  Score=115.06  Aligned_cols=89  Identities=26%  Similarity=0.470  Sum_probs=75.1

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--   80 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--   80 (306)
                      ..++.+.+.+.  .+|||+|.++.... ...++|..|.++|||+++|.|++||+|++|||+++.+++|++++.+|+..  
T Consensus        17 ~~~~~~~~~~~--~glG~~i~gg~~~~-~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~   93 (118)
T 1v6b_A           17 KDVRLLRIKKE--GSLDLALEGGVDSP-VGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWN   93 (118)
T ss_dssp             CCEEEEEEESC--SCCCCEEEEBTTSS-SCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHH
T ss_pred             ceEEEEEECCC--CccCEEEEcccCCC-CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhh
Confidence            45778888874  48999999885432 13499999999999999955999999999999999999999999999875  


Q ss_pred             --CCeEEEEEEeCCCC
Q psy8436          81 --DSHVEIVICRNPDD   94 (306)
Q Consensus        81 --~~~v~L~v~r~~~~   94 (306)
                        +..|+|+|.|....
T Consensus        94 ~~g~~v~l~v~r~~~~  109 (118)
T 1v6b_A           94 QGGDWIDLVVAVCPPK  109 (118)
T ss_dssp             HTCSEEEEEEECCCSC
T ss_pred             cCCCeEEEEEEeCCcc
Confidence              77999999996543

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.64  E-value=1.2e-15  Score=112.51  Aligned_cols=86  Identities=21%  Similarity=0.350  Sum_probs=76.7

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      ...|+|.|.|. ..+|||++.++...   .|++|..|.++|||+++| |+.||+|++|||+++.+++++++..+++..+.
T Consensus         5 ~~~r~v~l~k~-~~g~G~~l~~~~~~---~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~   79 (102)
T 2d90_A            5 SSGRVVVIKKG-SNGYGFYLRAGPEQ---KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGD   79 (102)
T ss_dssp             SSSEEEEEECC-SSSSSCEEEECSSS---SSEEEECCCTTSTTTTTT-CCTTCEEEEESSCBCTTSCHHHHHHHHHHSTT
T ss_pred             CCCEEEEEeeC-CCCccEEEEeecCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            45789999995 45999999986443   589999999999999999 99999999999999999999999999998888


Q ss_pred             eEEEEEEeCCC
Q psy8436          83 HVEIVICRNPD   93 (306)
Q Consensus        83 ~v~L~v~r~~~   93 (306)
                      .+.|+|.|...
T Consensus        80 ~v~l~v~r~~~   90 (102)
T 2d90_A           80 QTTLLVLDKEA   90 (102)
T ss_dssp             EEEEEECSTTC
T ss_pred             EEEEEEEECCC
Confidence            99999987654

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.64  E-value=1.2e-15  Score=108.57  Aligned_cols=82  Identities=15%  Similarity=0.273  Sum_probs=71.2

Q ss_pred             EEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEE
Q psy8436           6 KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVE   85 (306)
Q Consensus         6 ~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~   85 (306)
                      ..|.|.+  ..+|||++.++....  .+++|..|.++|||+++| |+.||+|++|||+++.++++.++..+++.++..+.
T Consensus         3 ~~v~l~~--~~~~G~~l~gg~~~~--~~v~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   77 (85)
T 1rgw_A            3 YSVTLTG--PGPWGFRLQGGKDFN--MPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLS   77 (85)
T ss_dssp             EEEEECC--SSCCCEEECCCGGGT--SCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEE
T ss_pred             EEEEEeC--CCccCEEEEeccCCC--CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEE
Confidence            4566643  468999999875432  579999999999999999 99999999999999999999999999998888899


Q ss_pred             EEEEeCC
Q psy8436          86 IVICRNP   92 (306)
Q Consensus        86 L~v~r~~   92 (306)
                      |+|.|..
T Consensus        78 l~v~R~~   84 (85)
T 1rgw_A           78 LTLQKSK   84 (85)
T ss_dssp             EEEESCC
T ss_pred             EEEEeCC
Confidence            9998853

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=99.64  E-value=2.6e-15  Score=111.51  Aligned_cols=83  Identities=17%  Similarity=0.246  Sum_probs=71.1

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--   80 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--   80 (306)
                      -++++|.|.|. ..+|||+|.++.     .|.+|+.|.+  +|+.+| |++||+|++|||+++.+++|++++.+|+.+  
T Consensus        11 ~~~~~V~L~Kg-~~G~GFsI~~~~-----~g~~V~~I~~--~~~~aG-L~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~   81 (113)
T 3soe_A           11 GLLVTIPLIKG-PKGFGFAIADSP-----TGQKVKMILD--SQWCQG-LQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPV   81 (113)
T ss_dssp             CEEEEEEEECB-TTBSSEEEEEET-----TEEEEEEESC--GGGSTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHSCT
T ss_pred             CCEEEEEEEEC-CCcccEEEeCCC-----CCcEEEEecC--hHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            36789999996 569999997653     3578999998  466666 999999999999999999999999999987  


Q ss_pred             CCeEEEEEEeCCCC
Q psy8436          81 DSHVEIVICRNPDD   94 (306)
Q Consensus        81 ~~~v~L~v~r~~~~   94 (306)
                      +..|+|+|.|....
T Consensus        82 G~~v~L~V~R~g~~   95 (113)
T 3soe_A           82 GADVPLLILRGGPP   95 (113)
T ss_dssp             TCEEEEEEEESSCC
T ss_pred             CCEEEEEEEECCcc
Confidence            66899999997643

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.63  E-value=3.1e-15  Score=112.41  Aligned_cols=87  Identities=23%  Similarity=0.228  Sum_probs=76.9

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      ...++|.|.|...++|||++.++....  .+++|..|.++|||+++|+|+.||+|++|||+++.+.+++++..+++..++
T Consensus        23 ~~~~~V~l~~~~~~~lG~~l~~~~~~~--~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~  100 (114)
T 2gzv_A           23 MVPGKVTLQKDAQNLIGISIGGGAQYC--PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKG  100 (114)
T ss_dssp             CCCEEEEEECCTTSCCSEEEEECCC----CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             CCCEEEEEEECCCCcEeEEEEeCCCCC--CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            356899999988888999999876542  579999999999999999999999999999999998999999999998888


Q ss_pred             eEEEEEEeC
Q psy8436          83 HVEIVICRN   91 (306)
Q Consensus        83 ~v~L~v~r~   91 (306)
                      .|.|+|.+.
T Consensus       101 ~v~l~v~~~  109 (114)
T 2gzv_A          101 EVTIHYNKL  109 (114)
T ss_dssp             EEEEEEECC
T ss_pred             eEEEEEEec
Confidence            899998654

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.63  E-value=2.8e-15  Score=110.60  Aligned_cols=89  Identities=19%  Similarity=0.305  Sum_probs=75.1

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCC-------cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGA-------HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL   77 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~-------~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l   77 (306)
                      -++|.|.|.....|||++.+.....       ...|++|..|.++|||+++|+|++||+|++|||+++.++++.++..+|
T Consensus         5 p~~v~l~~~~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l   84 (103)
T 2fcf_A            5 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAI   84 (103)
T ss_dssp             CEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CEEEEEEeCCCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4789999988789999998864321       124899999999999999999999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeCCC
Q psy8436          78 NNKDSHVEIVICRNPD   93 (306)
Q Consensus        78 ~~~~~~v~L~v~r~~~   93 (306)
                      +.+++.+.|+|.|...
T Consensus        85 ~~~~~~v~l~v~r~~~  100 (103)
T 2fcf_A           85 RKAGNPVVFMVQSIIS  100 (103)
T ss_dssp             HTCCSSEEEEEECCCC
T ss_pred             HhCCCcEEEEEEECCC
Confidence            9988899999998653

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=99.63  E-value=1.9e-15  Score=111.52  Aligned_cols=86  Identities=28%  Similarity=0.399  Sum_probs=73.7

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCC------cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGA------HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREA   76 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~------~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~   76 (306)
                      .+..+|.+.+.+  +|||+|.++....      ...|++|..|.++|||++ | |++||+|++|||+++.++++.+++.+
T Consensus        10 ~~~~~v~l~~~~--~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~   85 (103)
T 1n7t_A           10 KQEIRVRVEKDP--ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSL   85 (103)
T ss_dssp             CCCEEEEEECSS--CCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-S-CCTTCEEEEETTEECSSCCHHHHHHH
T ss_pred             cEEEEEEEccCC--CccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-C-CCCCCEEEEECCEECCCCCHHHHHHH
Confidence            345667788753  8999999975310      235899999999999999 8 99999999999999999999999999


Q ss_pred             HhcCCCeEEEEEEeCC
Q psy8436          77 LNNKDSHVEIVICRNP   92 (306)
Q Consensus        77 l~~~~~~v~L~v~r~~   92 (306)
                      ++.++..+.|+|.|..
T Consensus        86 ~~~~g~~v~l~v~R~~  101 (103)
T 1n7t_A           86 LKTFQNTVELIIVREV  101 (103)
T ss_dssp             HHHCCSEEEEEEECCC
T ss_pred             hhcCCCeEEEEEEecC
Confidence            9998899999999864

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=6e-16  Score=114.90  Aligned_cols=88  Identities=23%  Similarity=0.387  Sum_probs=78.3

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      +...|+|.|.| .+.+|||+|.+....   .|++|..|.++|||+++| |+.||+|++|||+++.++++.++..+++.++
T Consensus         6 ~~~~r~v~l~k-~~~~~G~~l~~~~~~---~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   80 (106)
T 2eei_A            6 SGQPRLCYLVK-EGGSYGFSLKTVQGK---KGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKSG   80 (106)
T ss_dssp             CSSSEEEEEEC-CSSSCSCCEECCSSC---CSCEECCCCTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHHC
T ss_pred             CCCCEEEEEEE-CCCCCCEEEEeccCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            45679999999 577999999876543   589999999999999999 9999999999999999999999999999888


Q ss_pred             CeEEEEEEeCCCC
Q psy8436          82 SHVEIVICRNPDD   94 (306)
Q Consensus        82 ~~v~L~v~r~~~~   94 (306)
                      ..+.|+|.|....
T Consensus        81 ~~v~l~v~r~~~~   93 (106)
T 2eei_A           81 SRVMFLLVDKETD   93 (106)
T ss_dssp             SEEEEEECCTTTS
T ss_pred             CeEEEEEEcCchh
Confidence            8999999886543

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.62  E-value=5.5e-15  Score=107.78  Aligned_cols=87  Identities=29%  Similarity=0.456  Sum_probs=75.4

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCC----cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGA----HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK   80 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~----~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~   80 (306)
                      ...+.+.+. ..+|||+|.++....    ...|++|..|.++|||+++| |++||+|++|||+++.++++.++...++..
T Consensus         4 ~~~v~~~~~-~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~   81 (97)
T 2w4f_A            4 ELTLTILRQ-TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGA   81 (97)
T ss_dssp             EEEEEEECB-TTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred             EEEEEEEeC-CCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhCC
Confidence            456788885 679999999875421    23689999999999999999 999999999999999999999999999888


Q ss_pred             CCeEEEEEEeCCC
Q psy8436          81 DSHVEIVICRNPD   93 (306)
Q Consensus        81 ~~~v~L~v~r~~~   93 (306)
                      +..+.|+|.|+..
T Consensus        82 g~~v~l~v~R~g~   94 (97)
T 2w4f_A           82 GTAVQMRVWRERE   94 (97)
T ss_dssp             CSEEEEEEECCSS
T ss_pred             CCeEEEEEEeCCc
Confidence            8999999998753

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.62  E-value=6.8e-15  Score=109.89  Aligned_cols=90  Identities=29%  Similarity=0.460  Sum_probs=78.1

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCC----cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGA----HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL   77 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~----~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l   77 (306)
                      +.+...+.+.+. ..+|||+|.++....    ...|++|..|.++|||+++| |++||+|++|||+.+.++++.++...+
T Consensus        13 ~~~~~~~~l~~~-~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~   90 (110)
T 1x5q_A           13 EEEELTLTILRQ-TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEAL   90 (110)
T ss_dssp             CCEEEEEEEECS-SSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CcceEEEEEecC-CCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHh
Confidence            445677888885 679999999875421    23689999999999999999 999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeCCC
Q psy8436          78 NNKDSHVEIVICRNPD   93 (306)
Q Consensus        78 ~~~~~~v~L~v~r~~~   93 (306)
                      +..+..|.|+|.|+..
T Consensus        91 ~~~g~~v~l~v~R~g~  106 (110)
T 1x5q_A           91 RGAGTAVQMRVWRESG  106 (110)
T ss_dssp             HSCCSEEEEEEEECSS
T ss_pred             hCCCCeEEEEEEECCc
Confidence            9888999999999754

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.62  E-value=3.6e-15  Score=113.54  Aligned_cols=89  Identities=19%  Similarity=0.305  Sum_probs=77.1

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCC-------cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGA-------HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL   77 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~-------~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l   77 (306)
                      .++|.+.|....+|||++.++....       ...|++|..|.++|||+++|+|++||+|++|||+++.+++++++..+|
T Consensus        25 p~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l  104 (123)
T 2iwq_A           25 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAI  104 (123)
T ss_dssp             CEEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CEEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4788899887789999998763311       125899999999999999999999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeCCC
Q psy8436          78 NNKDSHVEIVICRNPD   93 (306)
Q Consensus        78 ~~~~~~v~L~v~r~~~   93 (306)
                      +..++.|.|+|.|...
T Consensus       105 ~~~~~~v~l~v~r~~~  120 (123)
T 2iwq_A          105 RKAGNPVVFMVQSIIS  120 (123)
T ss_dssp             HHCCSSEEEEEECCCC
T ss_pred             HcCCCeEEEEEEECCc
Confidence            9988899999998653

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.62  E-value=5.3e-16  Score=109.87  Aligned_cols=80  Identities=18%  Similarity=0.366  Sum_probs=72.5

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      ..|+|.|.|.. .+|||++.++      .+++|..|.++|||+++| |+.||+|++|||+++.+++|+++..+++.+++.
T Consensus         2 ~~r~v~l~~~~-~g~G~~~~~~------~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   73 (83)
T 2kv8_A            2 RVRSVEVARGR-AGYGFTLSGQ------APCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCSGV   73 (83)
T ss_dssp             CEEEEEECCCS-SCCSCBCCCS------SSCBCCBCCTTSTTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCSSC
T ss_pred             CcEEEEEEeCC-CcccEEEEcC------CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            46889999965 6899999753      369999999999999999 999999999999999999999999999988888


Q ss_pred             EEEEEEeC
Q psy8436          84 VEIVICRN   91 (306)
Q Consensus        84 v~L~v~r~   91 (306)
                      +.|+|.|+
T Consensus        74 v~l~v~R~   81 (83)
T 2kv8_A           74 LHMVIAEG   81 (83)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEcC
Confidence            99999886

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.62  E-value=3.3e-15  Score=107.64  Aligned_cols=83  Identities=14%  Similarity=0.296  Sum_probs=72.5

Q ss_pred             EEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEE
Q psy8436           6 KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVE   85 (306)
Q Consensus         6 ~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~   85 (306)
                      +.|.+..  ..+|||++.++....  .|++|..|.++|||+++| |++||+|++|||+++.++++.++..+++..+..+.
T Consensus         5 ~~v~~~~--~~~~G~~l~~~~~~~--~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~   79 (91)
T 2pkt_A            5 QQIDLQG--PGPWGFRLVGGKDFE--QPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLT   79 (91)
T ss_dssp             EEEEEES--SSCCSEEEEEEGGGT--EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEE
T ss_pred             EEEEECC--CCCCCEEEEccCCCC--CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            4555554  468999999885432  579999999999999999 99999999999999999999999999999888999


Q ss_pred             EEEEeCCC
Q psy8436          86 IVICRNPD   93 (306)
Q Consensus        86 L~v~r~~~   93 (306)
                      |+|.|...
T Consensus        80 l~v~R~g~   87 (91)
T 2pkt_A           80 LTVARSEH   87 (91)
T ss_dssp             EEEEEECC
T ss_pred             EEEEECCc
Confidence            99999754

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.62  E-value=1.4e-15  Score=112.19  Aligned_cols=74  Identities=28%  Similarity=0.417  Sum_probs=65.1

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .+.|.|.|..  .+|||+|.++.+...  ..+||..|.+++||+++|+|++||+|++|||+++.+++|++|+++|++.
T Consensus         7 ~~~v~l~k~~--~glG~~i~gg~~~~~--~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   80 (103)
T 1ufx_A            7 GTLVRVKKSA--ATLGIAIEGGANTRQ--PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEA   80 (103)
T ss_dssp             SEEEEEECCS--SSCCEEEECBTTSSC--SSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHH
T ss_pred             eEEEEEEcCC--CcCCeEEECCCCCCC--CcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHh
Confidence            4578887764  789999999887531  2359999999999999999999999999999999999999999999987

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.62  E-value=9.1e-16  Score=115.85  Aligned_cols=84  Identities=48%  Similarity=0.810  Sum_probs=72.4

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ..+++|.|.|.+  .+|||++.++.+.+.+..|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+|+..
T Consensus        24 ~~~~~v~L~k~~--~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~  101 (117)
T 2fne_A           24 PQCKSITLERGP--DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT  101 (117)
T ss_dssp             CEEEEEEECCBT--TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             CccEEEEEEeCC--CcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            456789999885  689999999876543346899999999999999999999999999999999999999999999986


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      +. .+.|
T Consensus       102 ~~-~v~l  107 (117)
T 2fne_A          102 KG-TVTL  107 (117)
T ss_dssp             CS-SEEE
T ss_pred             CC-eEEE
Confidence            65 3544

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.62  E-value=5e-15  Score=109.08  Aligned_cols=84  Identities=30%  Similarity=0.565  Sum_probs=72.1

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCC--CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK  296 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~--~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk  296 (306)
                      .+++.|.|.|..  .+|||++.++.+.+.  +..|++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+++
T Consensus         3 ~~~~~v~l~k~~--~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~   80 (102)
T 2i1n_A            3 FKYEEIVLERGN--SGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALK   80 (102)
T ss_dssp             EEEEEEEEECBT--TBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             ceEEEEEEEECC--CcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            457789999874  689999999887543  2469999999999999999999999999999999999999999999998


Q ss_pred             hcCCCceec
Q psy8436         297 DIFPQSSKL  305 (306)
Q Consensus       297 ~~~~~~~~l  305 (306)
                      .. +..+.|
T Consensus        81 ~~-g~~v~l   88 (102)
T 2i1n_A           81 EA-GPVVRL   88 (102)
T ss_dssp             HS-CSEEEE
T ss_pred             cC-CCeEEE
Confidence            84 455543

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.62  E-value=8.7e-15  Score=111.56  Aligned_cols=85  Identities=32%  Similarity=0.542  Sum_probs=73.2

Q ss_pred             CCccceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy8436         216 SLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMF  295 (306)
Q Consensus       216 ~~~~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~L  295 (306)
                      ......++|.|.+..  .+|||++.++.+.   ..|++|..|.++++|+++|+|++||+|++|||+++.++++++++.+|
T Consensus        15 ~~~~~~~~v~l~~~~--~glG~~~~~g~~~---~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l   89 (123)
T 1ueq_A           15 QLKGTFLSTTLKKSN--MGFGFTIIGGDEP---DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLF   89 (123)
T ss_dssp             TCCSEEEEEEEECCT--TSCSEEEECCSSS---SCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHH
T ss_pred             cCCCcEEEEEEEeCC--CceeEEEecccCC---CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            345677889999884  6899999987653   25899999999999999999999999999999999999999999999


Q ss_pred             hhcC-CCceec
Q psy8436         296 KDIF-PQSSKL  305 (306)
Q Consensus       296 k~~~-~~~~~l  305 (306)
                      +..+ +..+.|
T Consensus        90 ~~~~~g~~v~l  100 (123)
T 1ueq_A           90 QSVPIGQSVNL  100 (123)
T ss_dssp             HTSCTTCEEEE
T ss_pred             HhCCCCCeEEE
Confidence            9976 555554

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.62  E-value=6.4e-15  Score=106.58  Aligned_cols=81  Identities=21%  Similarity=0.375  Sum_probs=71.9

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      ..|+|.|.|. ..+|||.+.+.      .|++|..|.++|||+++| |+.||+|++|||+++.++++.+++..++ .+..
T Consensus         8 ~~r~v~l~~~-~~~~G~~l~~~------~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~-~g~~   78 (93)
T 2dls_A            8 VQRCVIIQKD-QHGFGFTVSGD------RIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGAY   78 (93)
T ss_dssp             CEEEEEEECS-SSSCCEEEECS------SSCEEEEECSSSTTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHT-SSSE
T ss_pred             CCEEEEEEeC-CCceeEEEeCC------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhc-CCCE
Confidence            4688999885 46999999853      479999999999999999 9999999999999999999999999887 5789


Q ss_pred             EEEEEEeCCC
Q psy8436          84 VEIVICRNPD   93 (306)
Q Consensus        84 v~L~v~r~~~   93 (306)
                      |.|+|.|+..
T Consensus        79 v~l~v~R~~~   88 (93)
T 2dls_A           79 VALTLLGSSS   88 (93)
T ss_dssp             EEEEEECCCC
T ss_pred             EEEEEEECCC
Confidence            9999999754

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.62  E-value=5.7e-15  Score=110.32  Aligned_cols=85  Identities=26%  Similarity=0.518  Sum_probs=74.1

Q ss_pred             ccceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       218 ~~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      ....++|.|.|..  .+|||++.++.+.+.+..|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++.
T Consensus         6 ~~~~~~v~l~~~~--~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   83 (110)
T 1um1_A            6 SGYVFTVELERGP--SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRH   83 (110)
T ss_dssp             CCCEEEEEEECCT--TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHT
T ss_pred             CCcEEEEEEEECC--CccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            3567889999885  68999999988776556799999999999999999999999999999999999999999999988


Q ss_pred             cCCCceec
Q psy8436         298 IFPQSSKL  305 (306)
Q Consensus       298 ~~~~~~~l  305 (306)
                      . +..+.|
T Consensus        84 ~-~~~v~l   90 (110)
T 1um1_A           84 G-GKKMRF   90 (110)
T ss_dssp             C-CSEEEE
T ss_pred             C-CCeEEE
Confidence            5 454443

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.62  E-value=5.5e-15  Score=107.15  Aligned_cols=84  Identities=35%  Similarity=0.648  Sum_probs=71.7

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCC--CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK  296 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~--~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk  296 (306)
                      .++++|+|.|.+  .+|||++.++.+.+.  +..|++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+++
T Consensus         2 ~~~~~v~l~k~~--~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~   79 (94)
T 2fe5_A            2 MTIMEVNLLKGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLK   79 (94)
T ss_dssp             CCEEEEEEECCT--TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHH
T ss_pred             cEEEEEEEEECC--CCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            457889999985  689999999876532  2458999999999999999989999999999999999999999999998


Q ss_pred             hcCCCceec
Q psy8436         297 DIFPQSSKL  305 (306)
Q Consensus       297 ~~~~~~~~l  305 (306)
                      .... .+.|
T Consensus        80 ~~~~-~v~l   87 (94)
T 2fe5_A           80 NTSD-MVYL   87 (94)
T ss_dssp             TCCS-EEEE
T ss_pred             cCCC-eEEE
Confidence            7654 4443

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.62  E-value=2.5e-15  Score=123.58  Aligned_cols=88  Identities=22%  Similarity=0.318  Sum_probs=79.7

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      ..++.|.|.|..+.+|||++.++....  .|++|..|.++|||+++| |++||+|++|||+++.+++|.+++.+|+. +.
T Consensus        83 ~~~~~v~l~k~~~~~lG~~i~~~~~~~--~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~  158 (192)
T 3k1r_A           83 RKLKEVRLDRLHPEGLGLSVRGGLEFG--CGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRT-EK  158 (192)
T ss_dssp             SSCEEEEEETTSTTCCCEEEEEEGGGT--EEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHTS-SS
T ss_pred             CceEEEEEEeCCCCceeEEEEcccccC--CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHcC-CC
Confidence            467899999987889999999885432  589999999999999999 99999999999999999999999999999 88


Q ss_pred             eEEEEEEeCCCC
Q psy8436          83 HVEIVICRNPDD   94 (306)
Q Consensus        83 ~v~L~v~r~~~~   94 (306)
                      .|.|+|.|....
T Consensus       159 ~v~l~v~r~g~~  170 (192)
T 3k1r_A          159 TVSIKVRHIGLI  170 (192)
T ss_dssp             EEEEEEEECCEE
T ss_pred             eEEEEEEECCcc
Confidence            999999997653

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.61  E-value=5.2e-15  Score=109.36  Aligned_cols=89  Identities=19%  Similarity=0.311  Sum_probs=73.8

Q ss_pred             ccccEEEEEEeCCC---CceeEEEEecCCC----------CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCC
Q psy8436           2 EKQFKVFRVVKDDS---NELGIYIERQDGG----------AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL   68 (306)
Q Consensus         2 ~~~~~~v~l~r~~~---~~lG~~i~gg~~~----------~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~   68 (306)
                      .+-++.+.+.+...   .+|||++.|+...          ....|++|..|.++|||+++| |+.||+|++|||+++.++
T Consensus         2 ~~~~~~i~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~   80 (104)
T 3sfj_A            2 TAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMV   80 (104)
T ss_dssp             CCEEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTC
T ss_pred             CcceEEEEEEEccCCCCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCC
Confidence            44566777776433   3699999987542          224689999999999999999 999999999999999999


Q ss_pred             CHHHHHHHHhcC-CCeEEEEEEeC
Q psy8436          69 TIQEAREALNNK-DSHVEIVICRN   91 (306)
Q Consensus        69 ~~~~a~~~l~~~-~~~v~L~v~r~   91 (306)
                      +|+++..+++.. +..+.|+|.|.
T Consensus        81 ~~~~~~~~l~~~~g~~v~l~v~R~  104 (104)
T 3sfj_A           81 THDQARKRLTKRSEEVVRLLVTRQ  104 (104)
T ss_dssp             CHHHHHHHHTCTTCSEEEEEEEEC
T ss_pred             CHHHHHHHHHhCCCCEEEEEEEcC
Confidence            999999999865 57899999873

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.61  E-value=2.7e-15  Score=115.54  Aligned_cols=86  Identities=24%  Similarity=0.376  Sum_probs=71.9

Q ss_pred             ceEEEEEEeC--------CCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHH
Q psy8436         220 SMFTVTFQKG--------PGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEA  291 (306)
Q Consensus       220 ~~~~v~l~k~--------~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~ea  291 (306)
                      .+..+.+.+.        ....+|||+|.++.+...+..|+||..|.++|||+++|+|++||+|++|||+++.+++|+++
T Consensus        27 ~i~~v~l~~~~~~~~i~k~~~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~  106 (131)
T 1wfg_A           27 LIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEV  106 (131)
T ss_dssp             EEEEEEEECSCTTSCCCSCSCTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHH
T ss_pred             eeeEEEEeccceeEEEecCCCCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            3456666665        22478999999988766555699999999999999999999999999999999999999999


Q ss_pred             HHHHhhc-CCCceec
Q psy8436         292 IAMFKDI-FPQSSKL  305 (306)
Q Consensus       292 v~~Lk~~-~~~~~~l  305 (306)
                      +.+|++. ++..+.|
T Consensus       107 ~~~l~~~~~g~~v~l  121 (131)
T 1wfg_A          107 YNIILESKPEPQVEL  121 (131)
T ss_dssp             HHHHHHTSSSSEEEE
T ss_pred             HHHHHhcCCCCEEEE
Confidence            9999998 4455544

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=1.2e-15  Score=112.08  Aligned_cols=89  Identities=22%  Similarity=0.325  Sum_probs=77.4

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      +.+++++.+.+....+|||++.++....  .+++|..|.++|||+++|.|++||+|++|||+++.++ +.+++.+++.++
T Consensus         7 ~~~~~~~~v~~~~~~~~G~~~~gg~~~~--~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~   83 (100)
T 2edp_A            7 GGSFQYVPVQLQGGAPWGFTLKGGLEHC--EPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSF   83 (100)
T ss_dssp             CCCCEEEEEECCSCSCCCCCEEEEGGGT--EEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCC
T ss_pred             CCCcEEEEEEECCCCCcCEEEeccCCCC--CCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCC
Confidence            4578888888877789999999875432  4799999999999999933999999999999999997 899999999988


Q ss_pred             CeEEEEEEeCCC
Q psy8436          82 SHVEIVICRNPD   93 (306)
Q Consensus        82 ~~v~L~v~r~~~   93 (306)
                      ..|.|+|.|...
T Consensus        84 ~~v~l~v~R~~~   95 (100)
T 2edp_A           84 RILKLIVRRRNS   95 (100)
T ss_dssp             SSCEEEEEECCC
T ss_pred             CeEEEEEEeCCC
Confidence            899999999754

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=99.61  E-value=7e-15  Score=105.57  Aligned_cols=88  Identities=16%  Similarity=0.395  Sum_probs=72.3

Q ss_pred             CccccEEEEEEeCCC--CceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436           1 MEKQFKVFRVVKDDS--NELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALN   78 (306)
Q Consensus         1 ~~~~~~~v~l~r~~~--~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~   78 (306)
                      |-+..+.|.|.|...  .+|||+|.+..... ..|++|..|.++|||+++| |+.||+|++|||+++.+++++++..+++
T Consensus         3 ~~~~~~~v~i~k~~~~~~~~Gf~v~~~~~~~-~~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~l~~~l~   80 (94)
T 3kzd_A            3 MGKVTHSIHIEKSDTAADTYGFSLSSVEEDG-IRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLS   80 (94)
T ss_dssp             -CCEEEEEEEEC------CCSEEEEEECSSS-SCEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHH
T ss_pred             cccceeEEEEEeCCCCcCCcCEEEEecCCCC-cCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            567789999999754  48999998854221 2589999999999999999 9999999999999999999999999998


Q ss_pred             cCCCeEEEEEEeCC
Q psy8436          79 NKDSHVEIVICRNP   92 (306)
Q Consensus        79 ~~~~~v~L~v~r~~   92 (306)
                      +  ..++|+|...+
T Consensus        81 ~--~~l~ltV~~~p   92 (94)
T 3kzd_A           81 Q--PSLGLLVRTYP   92 (94)
T ss_dssp             S--SEEEEEEEECC
T ss_pred             C--CeEEEEEEecC
Confidence            6  47888887643

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.61  E-value=4.8e-15  Score=106.78  Aligned_cols=77  Identities=22%  Similarity=0.471  Sum_probs=68.5

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      .+++|+|.|.+  .+|||++.++.+.    .|++|..|.++|||+++| |++||+|++|||+++.++++.+++.+|++.+
T Consensus         3 ~~r~v~l~r~~--~g~G~~~~~~~~~----~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   75 (91)
T 1g9o_A            3 LPRLCCLEKGP--NGYGFHLHGEKGK----LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAAL   75 (91)
T ss_dssp             CCEEEEEECBT--TBCCEEEEECTTC----SSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCS
T ss_pred             ccEEEEEEeCC--CcccEEEEecCCC----CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            46789999986  5899999987753    589999999999999999 9999999999999999999999999999876


Q ss_pred             CCce
Q psy8436         300 PQSS  303 (306)
Q Consensus       300 ~~~~  303 (306)
                      +...
T Consensus        76 ~~~~   79 (91)
T 1g9o_A           76 NAVR   79 (91)
T ss_dssp             SEEE
T ss_pred             CcEE
Confidence            5443

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.61  E-value=7.1e-15  Score=106.79  Aligned_cols=82  Identities=26%  Similarity=0.466  Sum_probs=70.3

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .+.+.|.|.|.....+|||++.++.+.    .|++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+++..
T Consensus         2 ~~~~~v~l~k~~~~~~lG~~~~~~~~~----~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   77 (95)
T 2vwr_A            2 MEILQVALHKRDSGEQLGIKLVRRTDE----PGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQAS   77 (95)
T ss_dssp             EEEEEEEEECSSTTCCCCEEEEECSSS----CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             cEEEEEEEEECCCCCcccEEEEeccCC----CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            356789999874447899999887763    5899999999999999999999999999999999999999999999875


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                       +..+.|
T Consensus        78 -g~~v~l   83 (95)
T 2vwr_A           78 -GERVNL   83 (95)
T ss_dssp             -CSEEEE
T ss_pred             -CCEEEE
Confidence             454443

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.61  E-value=3.3e-15  Score=113.73  Aligned_cols=93  Identities=24%  Similarity=0.297  Sum_probs=80.0

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCC--CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGG--AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN   79 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~--~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~   79 (306)
                      +.+.++|.|.|....+|||+|.++...  ....+++|..|.+++||+++|.|++||+|++|||+++.+++++++..+|+.
T Consensus        13 ~~~~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~   92 (122)
T 1v5q_A           13 HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRD   92 (122)
T ss_dssp             CEEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHH
T ss_pred             cceeEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            457889999998788999999987311  112469999999999999999999999999999999999999999999998


Q ss_pred             C--CCeEEEEEEeCCCC
Q psy8436          80 K--DSHVEIVICRNPDD   94 (306)
Q Consensus        80 ~--~~~v~L~v~r~~~~   94 (306)
                      .  +..|.|+|.|+...
T Consensus        93 ~~~g~~v~l~v~R~~~~  109 (122)
T 1v5q_A           93 SSITSKVTLEIEFDVAE  109 (122)
T ss_dssp             HTTTTCEEEEEEEECCC
T ss_pred             CCCCCeEEEEEEECCcc
Confidence            7  57899999997643

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.61  E-value=1.6e-15  Score=116.46  Aligned_cols=85  Identities=33%  Similarity=0.548  Sum_probs=73.6

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCC-CCCHHHHHHHHhh
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLE-NKTHAEAIAMFKD  297 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~-~~~~~eav~~Lk~  297 (306)
                      ..++.|.|.|... .+|||+|.++.+...+..|+||..|.++|||+++|+|++||+|++|||+++. +++|++++.+|+.
T Consensus        24 ~~~~~v~l~k~~~-~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~  102 (128)
T 2db5_A           24 RQIEYIDIERPST-GGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQ  102 (128)
T ss_dssp             CEEEEEEEECCSS-SCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHH
T ss_pred             CceEEEEEEECCC-CccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc
Confidence            4578899999864 6899999998876555569999999999999999999999999999999997 9999999999998


Q ss_pred             cCCCceec
Q psy8436         298 IFPQSSKL  305 (306)
Q Consensus       298 ~~~~~~~l  305 (306)
                      . +..+.|
T Consensus       103 ~-~~~v~l  109 (128)
T 2db5_A          103 T-TGSLRL  109 (128)
T ss_dssp             C-CSEEEE
T ss_pred             C-CCeEEE
Confidence            4 455544

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.61  E-value=5.7e-15  Score=109.37  Aligned_cols=83  Identities=39%  Similarity=0.681  Sum_probs=71.1

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCC--CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~--~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      ..++|.|.|.+  .+|||++.++.+.+.  +..|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.++++
T Consensus         3 ~~~~v~l~k~~--~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   80 (105)
T 2awx_A            3 KIMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKN   80 (105)
T ss_dssp             CEEEEEEECBT--TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHS
T ss_pred             eEEEEEEEECC--CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            46789999886  689999999876432  23589999999999999999999999999999999999999999999987


Q ss_pred             cCCCceec
Q psy8436         298 IFPQSSKL  305 (306)
Q Consensus       298 ~~~~~~~l  305 (306)
                      . +..+.|
T Consensus        81 ~-~~~v~l   87 (105)
T 2awx_A           81 T-SDFVYL   87 (105)
T ss_dssp             C-CSEEEE
T ss_pred             C-CCeEEE
Confidence            6 455443

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.61  E-value=6.3e-15  Score=105.46  Aligned_cols=82  Identities=24%  Similarity=0.405  Sum_probs=69.9

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CC
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KD   81 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~   81 (306)
                      ++++|.|.|.. .+|||++.+....   .+++|..| ++|||+ +| |+.||+|++|||+++.+++++++..+|+.  .+
T Consensus         3 ~~~~v~l~k~~-~g~G~~~~~~~~~---~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g   75 (88)
T 3bpu_A            3 ELITVHIVKGP-MGFGFTIADSPGG---GGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKKNVQALTHNQVVDMLVESPKG   75 (88)
T ss_dssp             EEEEEEEECBT-TBSSCEEEECTTS---SSEEEEEC-CC--CC-TT-CCTTCEEEEETTEECTTSCHHHHHHHHHTSCTT
T ss_pred             cEEEEEEEcCC-CceeEEEEecCCC---CcEEEEEe-cCChhH-hC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCC
Confidence            67899999954 6999999976543   57999987 999999 88 99999999999999999999999999985  47


Q ss_pred             CeEEEEEEeCC
Q psy8436          82 SHVEIVICRNP   92 (306)
Q Consensus        82 ~~v~L~v~r~~   92 (306)
                      ..+.|+|.|..
T Consensus        76 ~~v~l~v~R~g   86 (88)
T 3bpu_A           76 SEVTLLVQRQT   86 (88)
T ss_dssp             CEEEEEEEEEC
T ss_pred             CEEEEEEEeCC
Confidence            78999998864

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.61  E-value=6.2e-15  Score=111.28  Aligned_cols=84  Identities=36%  Similarity=0.675  Sum_probs=71.6

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCC--CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK  296 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~--~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk  296 (306)
                      .+++.|.|.|+.  .+|||+|.++.+.+.  +..|++|..|.++|||+++|+|++||+|++|||+++.++++++++.+|+
T Consensus        23 ~~~~~v~l~k~~--~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~  100 (117)
T 2byg_A           23 MTVVEIKLFKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILK  100 (117)
T ss_dssp             EEEEEEEEECBT--TBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CceEEEEEEeCC--CCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            456788898875  789999999876532  2468999999999999999999999999999999999999999999999


Q ss_pred             hcCCCceec
Q psy8436         297 DIFPQSSKL  305 (306)
Q Consensus       297 ~~~~~~~~l  305 (306)
                      +. +..+.|
T Consensus       101 ~~-g~~v~l  108 (117)
T 2byg_A          101 NT-SEVVYL  108 (117)
T ss_dssp             TC-CSEEEE
T ss_pred             cC-CCeEEE
Confidence            76 455544

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.61  E-value=1.4e-14  Score=108.40  Aligned_cols=91  Identities=27%  Similarity=0.433  Sum_probs=76.4

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCC-cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--   80 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~-~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--   80 (306)
                      +...+.+.+ ...+|||+|.++.... ...|++|..|.++|||+++|+|++||+|++|||+++.+++++++..+|+.+  
T Consensus        11 ~~~~~~l~~-~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   89 (111)
T 2koj_A           11 KRLNIQLKK-GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKM   89 (111)
T ss_dssp             EEEEEEEEC-BTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCC
T ss_pred             cEEEEEEEE-CCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            345667777 4569999999875321 125799999999999999999999999999999999999999999999986  


Q ss_pred             CCeEEEEEEeCCCCC
Q psy8436          81 DSHVEIVICRNPDDA   95 (306)
Q Consensus        81 ~~~v~L~v~r~~~~~   95 (306)
                      +..|.|+|.|.....
T Consensus        90 g~~v~l~v~R~~~~~  104 (111)
T 2koj_A           90 EGTVSLLVFRQEEAF  104 (111)
T ss_dssp             SSEEEEEEEECCCCC
T ss_pred             CCeEEEEEEeCCCCc
Confidence            678999999976543

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.61  E-value=3e-15  Score=107.64  Aligned_cols=81  Identities=26%  Similarity=0.509  Sum_probs=69.7

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      ..++|.|.|..  .+|||++.++.+..   .+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+|++.+
T Consensus         2 ~~~~v~l~~~~--~g~G~~~~~g~~~~---~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   76 (90)
T 2q9v_A            2 MEQDIFLWRKE--TGFGFRILGGNEPG---EPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAA   76 (90)
T ss_dssp             EEEEEEEECBT--TBCCEEEEECSSTT---SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEEECC--CccCEEEEccccCC---CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            35688999885  68999999887642   57999999999999999999999999999999999999999999999876


Q ss_pred             CC-ceec
Q psy8436         300 PQ-SSKL  305 (306)
Q Consensus       300 ~~-~~~l  305 (306)
                      .+ .+.|
T Consensus        77 ~~~~v~l   83 (90)
T 2q9v_A           77 KQGHVNL   83 (90)
T ss_dssp             HHTEEEE
T ss_pred             CCCeEEE
Confidence            43 4443

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.60  E-value=5e-15  Score=118.92  Aligned_cols=84  Identities=30%  Similarity=0.567  Sum_probs=71.8

Q ss_pred             cceEEEEEEeCCCCCcccEEEEc---CCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVG---GRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMF  295 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~g---g~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~L  295 (306)
                      ...+.|.|.|+.  .+|||+|.+   +.+...+..|+||..|.++|||+++|+|++||+|++|||+++.+++|.+++.+|
T Consensus        79 ~~~~~v~l~k~~--~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l  156 (170)
T 3egg_C           79 LELFPVELEKDS--EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVL  156 (170)
T ss_dssp             SEEEEEEEECBT--TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHH
T ss_pred             ceEEEEEEEeCC--CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            556789998885  689999998   444433457899999999999999999999999999999999999999999999


Q ss_pred             hhcCCCceec
Q psy8436         296 KDIFPQSSKL  305 (306)
Q Consensus       296 k~~~~~~~~l  305 (306)
                      +.. +..+.|
T Consensus       157 ~~~-g~~v~L  165 (170)
T 3egg_C          157 RNT-KGRVRF  165 (170)
T ss_dssp             HHC-CSEEEE
T ss_pred             HcC-CCEEEE
Confidence            984 455554

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.60  E-value=8.7e-15  Score=107.58  Aligned_cols=84  Identities=36%  Similarity=0.683  Sum_probs=71.9

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCC--CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK  296 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~--~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk  296 (306)
                      ..++.|+|.|.+  .+|||++.++.+.+.  ...|++|..|.++|+|+++|+|++||+|++|||+++.++++.+++.+|+
T Consensus         6 ~~~~~v~l~~~~--~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~   83 (101)
T 2jik_A            6 VTEEEINLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR   83 (101)
T ss_dssp             EEEEEEEEECCT--TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             CccEEEEEEeCC--CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            457889999985  789999999887542  2358999999999999999999999999999999999999999999998


Q ss_pred             hcCCCceec
Q psy8436         297 DIFPQSSKL  305 (306)
Q Consensus       297 ~~~~~~~~l  305 (306)
                      .. +..+.|
T Consensus        84 ~~-g~~v~l   91 (101)
T 2jik_A           84 NA-GYAVSL   91 (101)
T ss_dssp             TC-CSEEEE
T ss_pred             hC-CCeEEE
Confidence            75 444443

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.60  E-value=7.6e-16  Score=113.68  Aligned_cols=88  Identities=19%  Similarity=0.342  Sum_probs=76.9

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      .+.+.+.|.+.. .+|||++.++....  .+++|..|.++|||+++|+|+.||+|++|||+++.++++.++..+++.++.
T Consensus        10 ~~~~~v~l~~~~-~g~G~~~~~~~~~~--~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~   86 (103)
T 1wfv_A           10 FDYFTVDMEKGA-KGFGFSIRGGREYK--MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGR   86 (103)
T ss_dssp             SCCEECCEECCT-TSSSBCCEEETTTT--EEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCS
T ss_pred             ceEEEEEEecCC-CcCCEEEeccccCC--CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            345677888854 68999999886532  479999999999999999999999999999999999999999999998788


Q ss_pred             eEEEEEEeCCC
Q psy8436          83 HVEIVICRNPD   93 (306)
Q Consensus        83 ~v~L~v~r~~~   93 (306)
                      .|.|+|.|...
T Consensus        87 ~v~l~v~R~~~   97 (103)
T 1wfv_A           87 RVRLLLKRGTG   97 (103)
T ss_dssp             EECEEEECTTC
T ss_pred             eEEEEEEECCC
Confidence            99999998754

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.60  E-value=3e-15  Score=110.41  Aligned_cols=82  Identities=28%  Similarity=0.436  Sum_probs=69.5

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ..++.|.|.|..+ .+|||++.++.+..   .|++|..|.++|||+++++|++||+|++|||+++.+++|.+++.+|++.
T Consensus         8 ~~~~~v~l~~~~~-~~lG~~l~~g~~~~---~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~   83 (103)
T 2dc2_A            8 GPIRKVLLLKEDH-EGLGISITGGKEHG---VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ   83 (103)
T ss_dssp             -CEEEEEEECCSS-SCCCEEEEEEGGGT---EEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHC
T ss_pred             CCcEEEEEEeCCC-CccCEEEEeccCCC---CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            4467889988764 78999999887642   5899999999999999744999999999999999999999999999987


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      ++ .+.|
T Consensus        84 ~~-~v~l   89 (103)
T 2dc2_A           84 RG-EIEF   89 (103)
T ss_dssp             CS-EEEE
T ss_pred             CC-cEEE
Confidence            65 4444

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.60  E-value=5.4e-15  Score=109.90  Aligned_cols=85  Identities=31%  Similarity=0.599  Sum_probs=72.3

Q ss_pred             ccceEEEEEEeCCCCCcccEEEEc---CCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy8436         218 SLSMFTVTFQKGPGQKSLGFSIVG---GRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM  294 (306)
Q Consensus       218 ~~~~~~v~l~k~~~~~~lG~~l~g---g~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~  294 (306)
                      ..+.+.|.|.|..  .+|||++.+   +.+......|+||..|.++|||+++|+|++||+|++|||+++.++++.+++.+
T Consensus         7 ~~~~~~v~l~k~~--~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   84 (107)
T 1wf8_A            7 GLELFPVELEKDE--DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATV   84 (107)
T ss_dssp             CEEEEEEEEECBT--TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHH
T ss_pred             CceEEEEEEEECC--CcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            3667889998874  689999998   55544445699999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCceec
Q psy8436         295 FKDIFPQSSKL  305 (306)
Q Consensus       295 Lk~~~~~~~~l  305 (306)
                      |+.. ...+.|
T Consensus        85 ~~~~-~~~v~l   94 (107)
T 1wf8_A           85 LRNT-KGNVRF   94 (107)
T ss_dssp             HHHC-CSEEEE
T ss_pred             HhcC-CCeEEE
Confidence            9885 455544

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=3.9e-15  Score=107.97  Aligned_cols=83  Identities=16%  Similarity=0.240  Sum_probs=72.7

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV   84 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v   84 (306)
                      .+.|.|.+  ..+|||.+.++....  .+++|..|.+++||+++| |+.||+|++|||+++.++++.++..+++..+..+
T Consensus         9 ~~~v~l~~--~~~~G~~l~gg~~~~--~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v   83 (94)
T 2eeg_A            9 PHSVTLRG--PSPWGFRLVGGRDFS--APLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGCHDHL   83 (94)
T ss_dssp             CEEEEECC--SSCCSCCEECCTTTT--SCCEECCCCSSSHHHHTT-CCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCE
T ss_pred             eEEEEEeC--CCccCEEEECccCCC--CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            46677744  468999999886532  579999999999999999 9999999999999999999999999999888899


Q ss_pred             EEEEEeCC
Q psy8436          85 EIVICRNP   92 (306)
Q Consensus        85 ~L~v~r~~   92 (306)
                      .|+|.|..
T Consensus        84 ~l~v~R~g   91 (94)
T 2eeg_A           84 TLSVSSGP   91 (94)
T ss_dssp             EEEEECCS
T ss_pred             EEEEEeCC
Confidence            99998864

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.60  E-value=1.8e-15  Score=109.78  Aligned_cols=84  Identities=14%  Similarity=0.258  Sum_probs=73.9

Q ss_pred             EEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEE
Q psy8436           7 VFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEI   86 (306)
Q Consensus         7 ~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L   86 (306)
                      ++.+.+....+|||++.++....  .|++|..|.++|||+++| |++||+|++|||+++.+++|.++..+++..+..+.|
T Consensus         7 ~~~~~~~~~~~lG~~l~~g~~~~--~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l   83 (94)
T 1vb7_A            7 GLTVDVAGPAPWGFRISGGRDFH--TPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRL   83 (94)
T ss_dssp             CEEEEECSSSCCSBCCEEETTTT--EEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEE
T ss_pred             EEEEEecCCCCccEEEecccCCC--CCeEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEE
Confidence            35566667789999999875532  579999999999999999 999999999999999999999999999988888999


Q ss_pred             EEEeCCC
Q psy8436          87 VICRNPD   93 (306)
Q Consensus        87 ~v~r~~~   93 (306)
                      +|.|+..
T Consensus        84 ~v~R~g~   90 (94)
T 1vb7_A           84 QLDRSSG   90 (94)
T ss_dssp             EEECCCC
T ss_pred             EEEECCc
Confidence            9999753

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.60  E-value=9.3e-15  Score=103.87  Aligned_cols=79  Identities=28%  Similarity=0.522  Sum_probs=67.8

Q ss_pred             EEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC-C
Q psy8436         222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF-P  300 (306)
Q Consensus       222 ~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~-~  300 (306)
                      ++|+|.|..  .+|||++.++.+.   ..|++|..|.+++||+++|.|++||+|++|||+++.++++.++..+|+..+ +
T Consensus         2 ~~v~l~k~~--~g~G~~i~~~~~~---~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g   76 (85)
T 2i04_A            2 IHTKLRKSS--RGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIG   76 (85)
T ss_dssp             EEEEEECBT--TBSSEEEEECCST---TBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTT
T ss_pred             EEEEEEECC--CCCCEEEEcccCC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            367888875  6899999987653   257999999999999999889999999999999999999999999999876 4


Q ss_pred             Cceec
Q psy8436         301 QSSKL  305 (306)
Q Consensus       301 ~~~~l  305 (306)
                      ..+.|
T Consensus        77 ~~v~l   81 (85)
T 2i04_A           77 ASVDL   81 (85)
T ss_dssp             CEEEE
T ss_pred             CeEEE
Confidence            44443

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.60  E-value=9.5e-15  Score=106.46  Aligned_cols=89  Identities=28%  Similarity=0.421  Sum_probs=75.5

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCC--cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGA--HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK   80 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~--~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~   80 (306)
                      .+..+|.|.+ ...+|||++.+.....  ...|++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++.+
T Consensus         3 ~~~~~v~l~~-~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   81 (97)
T 2iwn_A            3 SETFDVELTK-NVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT   81 (97)
T ss_dssp             EEEEEEEEEC-BTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTC
T ss_pred             cEEEEEEEec-CCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3456777877 4678999999874311  125899999999999999999999999999999999999999999999988


Q ss_pred             CCeEEEEEEeCC
Q psy8436          81 DSHVEIVICRNP   92 (306)
Q Consensus        81 ~~~v~L~v~r~~   92 (306)
                      +..+.|+|.|..
T Consensus        82 ~~~v~l~v~r~g   93 (97)
T 2iwn_A           82 GQTVLLTLMRRG   93 (97)
T ss_dssp             CSEEEEEEEEEE
T ss_pred             CCeEEEEEEeCC
Confidence            889999998853

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.60  E-value=4.9e-15  Score=111.93  Aligned_cols=87  Identities=26%  Similarity=0.551  Sum_probs=72.0

Q ss_pred             ccceEEEEEEeCCC-----CCcccEEEEcCCCCCC--CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHH
Q psy8436         218 SLSMFTVTFQKGPG-----QKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE  290 (306)
Q Consensus       218 ~~~~~~v~l~k~~~-----~~~lG~~l~gg~~~~~--~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~e  290 (306)
                      ....+.|.|.|...     ..+|||+|.++.+.+.  +..|+||..|.++|||+++|+|++||+|++|||+++.+++|.+
T Consensus        10 ~~~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~   89 (117)
T 1ujd_A           10 IFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEE   89 (117)
T ss_dssp             SSCEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHH
T ss_pred             CCceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHH
Confidence            35567888888751     2689999999876532  2358999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCceec
Q psy8436         291 AIAMFKDIFPQSSKL  305 (306)
Q Consensus       291 av~~Lk~~~~~~~~l  305 (306)
                      ++.+|+. ....+.|
T Consensus        90 ~~~~l~~-~~~~v~l  103 (117)
T 1ujd_A           90 VQSIISQ-QSGEAEI  103 (117)
T ss_dssp             HHHHHSC-CSSCEEE
T ss_pred             HHHHHhc-CCCEEEE
Confidence            9999998 4455544

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.59  E-value=1.1e-14  Score=110.38  Aligned_cols=83  Identities=29%  Similarity=0.521  Sum_probs=72.2

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.+.|.|.. ..+|||+|.++.+..  ..|++|..|.++|||+++|+|++||+|++|||+++.+++|.+++.+|+..
T Consensus        14 ~~~~~v~l~~~~-~~~lG~~i~g~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~   90 (119)
T 1x6d_A           14 DGIHVTILHKEE-GAGLGFSLAGGADLE--NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQA   90 (119)
T ss_dssp             TTEEEEEEECCT-TSCCSEEEECCSSSS--CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHT
T ss_pred             CCeEEEEEEeCC-CCccCEEEeCCCCCC--CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            456778888875 379999999987642  25899999999999999999999999999999999999999999999998


Q ss_pred             CCCcee
Q psy8436         299 FPQSSK  304 (306)
Q Consensus       299 ~~~~~~  304 (306)
                      +...+.
T Consensus        91 ~~~~~~   96 (119)
T 1x6d_A           91 REPRQA   96 (119)
T ss_dssp             TSSSEE
T ss_pred             CCCeEE
Confidence            877653

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.59  E-value=3.1e-15  Score=112.87  Aligned_cols=90  Identities=27%  Similarity=0.426  Sum_probs=78.1

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      +.+.|.|.+. ..+|||+|.++.+.. ..|++|..|.++|||+++|+|+.||+|++|||+++.++++.++..+++.++..
T Consensus        17 ~~~~v~l~~~-~~glG~~l~~~~~~~-~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~   94 (116)
T 2dm8_A           17 QEMIIEISKG-RSGLGLSIVGGKDTP-LNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQK   94 (116)
T ss_dssp             SCEEEEEECC-SSCCCCCCBCCTTSS-CSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCCSE
T ss_pred             CEEEEEEEEC-CCcccEEEeCCCCCC-cCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            4678889884 579999999875431 14799999999999999999999999999999999999999999999988889


Q ss_pred             EEEEEEeCCCCC
Q psy8436          84 VEIVICRNPDDA   95 (306)
Q Consensus        84 v~L~v~r~~~~~   95 (306)
                      |.|+|.|.....
T Consensus        95 v~l~v~R~~~~~  106 (116)
T 2dm8_A           95 VRLVVYRDEAHY  106 (116)
T ss_dssp             EEEEEECCSSCC
T ss_pred             EEEEEEeCCccc
Confidence            999999876543

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.59  E-value=1.2e-14  Score=104.86  Aligned_cols=81  Identities=37%  Similarity=0.632  Sum_probs=69.4

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ++.++|+|.|.+. .+|||++.++.+.    .|++|..|.++|||+++|+|++||+|++|||+++.+++++++..+++..
T Consensus         3 ~~~~~v~l~k~~~-~~lG~~~~~~~~~----~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   77 (92)
T 2qg1_A            3 SDTLTIGLQKKPG-KGLGLSIVGKRND----TGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCS   77 (92)
T ss_dssp             -CEEEEEEECCTT-SCCSEEEECCSSS----CSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             ceEEEEEEEeCCC-CcccEEEEeccCC----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            4578899998764 7899999987653    5899999999999999999999999999999999999999999999875


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      . +.+.|
T Consensus        78 ~-~~v~l   83 (92)
T 2qg1_A           78 L-GTVTL   83 (92)
T ss_dssp             C-SEEEE
T ss_pred             C-CeEEE
Confidence            3 44443

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.59  E-value=9.4e-15  Score=105.69  Aligned_cols=79  Identities=25%  Similarity=0.408  Sum_probs=68.7

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      .++.|.|.|..  .+|||++.++..    ..+++|..|.++|||+++|+|++||+|++|||+++.+++|++++.+|++.+
T Consensus         4 ~~r~v~l~k~~--~~lG~~i~~~~~----~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   77 (93)
T 3o46_A            4 SVKIIRLVKNR--EPLGATIKKDEQ----TGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQ   77 (93)
T ss_dssp             CCEEEEEEESS--SCCCEEEEECTT----TCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCC
T ss_pred             cEEEEEEEeCC--CCccEEEEecCC----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            45789999984  699999988622    258999999999999999999999999999999999999999999999877


Q ss_pred             CCceec
Q psy8436         300 PQSSKL  305 (306)
Q Consensus       300 ~~~~~l  305 (306)
                      + .+.|
T Consensus        78 ~-~v~l   82 (93)
T 3o46_A           78 G-AITF   82 (93)
T ss_dssp             E-EEEE
T ss_pred             C-eEEE
Confidence            5 5543

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.59  E-value=5.9e-15  Score=107.23  Aligned_cols=78  Identities=22%  Similarity=0.324  Sum_probs=68.2

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP  300 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~  300 (306)
                      ++.|.|.|..+ .+|||++....+     .|++|.+|.++|||+++|+|++||+|++|||+++.++++++++++|+.. .
T Consensus        13 ~~~v~l~K~~~-~~lG~~l~~~~~-----~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~-~   85 (97)
T 2ejy_A           13 VRLIQFEKVTE-EPMGICLKLNEK-----QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET-K   85 (97)
T ss_dssp             CEEEEEEECSS-SCCSEEEEECTT-----CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHC-C
T ss_pred             cEEEEEEeCCC-CCeeEEEEeCCC-----CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-C
Confidence            57899999875 789999986543     4899999999999999999999999999999999999999999999986 3


Q ss_pred             Cceec
Q psy8436         301 QSSKL  305 (306)
Q Consensus       301 ~~~~l  305 (306)
                      +.+.|
T Consensus        86 ~~v~L   90 (97)
T 2ejy_A           86 GMISL   90 (97)
T ss_dssp             EEEEE
T ss_pred             CeEEE
Confidence            45544

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.59  E-value=6.8e-15  Score=108.93  Aligned_cols=84  Identities=31%  Similarity=0.582  Sum_probs=71.4

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCC---CCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMF  295 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~---~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~L  295 (306)
                      .+.+.|.|.|..  .+|||+|.++.+.+   .+..|+||..|.++|||+++|.|++||+|++|||+++.++++.+++.+|
T Consensus         6 ~~~~~v~l~~~~--~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l   83 (105)
T 1wha_A            6 SGRHVACLARSE--RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLL   83 (105)
T ss_dssp             CEEEEEEECCCT--TCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHH
T ss_pred             CeeEEEEEEeCC--CccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            556788888875  67999999988742   2246899999999999999999999999999999999999999999999


Q ss_pred             hhcCCCceec
Q psy8436         296 KDIFPQSSKL  305 (306)
Q Consensus       296 k~~~~~~~~l  305 (306)
                      +.. ...+.|
T Consensus        84 ~~~-g~~v~l   92 (105)
T 1wha_A           84 TAA-SPTIAL   92 (105)
T ss_dssp             TSC-CSCEEE
T ss_pred             HcC-CCeEEE
Confidence            986 444544

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.59  E-value=1.9e-15  Score=113.44  Aligned_cols=88  Identities=27%  Similarity=0.413  Sum_probs=79.0

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      ..+.+.|.|.|. ..+|||+|.++...   .+++|..|.+++||+++|+|++||+|++|||+++.++++.++..+++..+
T Consensus        13 ~~~~~~v~l~k~-~~glG~~l~~~~~~---~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~   88 (113)
T 1um7_A           13 AREPRKIILHKG-STGLGFNIVGGEDG---EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAG   88 (113)
T ss_dssp             CCSEEEEEEECC-SSCSSBCCBCCSTT---CCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCC
T ss_pred             CCceEEEEEEEC-CCcccEEEEeccCC---CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            467899999995 57999999887643   58999999999999999999999999999999999999999999999888


Q ss_pred             CeEEEEEEeCCC
Q psy8436          82 SHVEIVICRNPD   93 (306)
Q Consensus        82 ~~v~L~v~r~~~   93 (306)
                      ..+.|+|.|...
T Consensus        89 ~~v~l~v~r~~~  100 (113)
T 1um7_A           89 QSVTIVAQYRPE  100 (113)
T ss_dssp             SEEEEEEECCHH
T ss_pred             CcEEEEEEECcc
Confidence            899999998653

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.59  E-value=3.4e-15  Score=110.17  Aligned_cols=83  Identities=24%  Similarity=0.520  Sum_probs=71.1

Q ss_pred             ccceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       218 ~~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      ....+.|.|.+..  .+|||++.++.+.   ..+++|..|.++|||+++|+|++||+|++|||+++.+++|++++.+|+.
T Consensus         7 ~~~~~~v~l~~~~--~g~G~~i~~g~~~---~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~   81 (103)
T 1uep_A            7 GYKELDVHLRRME--SGFGFRILGGDEP---GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHH   81 (103)
T ss_dssp             SEEEECCEEESSS--SSCCEEECCCCST---TSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHH
T ss_pred             CceEEEEEEEeCC--CccCEEEeeecCC---CCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            3567788998864  6899999987653   2589999999999999999999999999999999999999999999998


Q ss_pred             cC-CCceec
Q psy8436         298 IF-PQSSKL  305 (306)
Q Consensus       298 ~~-~~~~~l  305 (306)
                      .+ ...+.|
T Consensus        82 ~~~g~~v~l   90 (103)
T 1uep_A           82 AARNGQVNL   90 (103)
T ss_dssp             HHHHTEEEE
T ss_pred             CCCCCcEEE
Confidence            75 455444

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.59  E-value=8.9e-15  Score=108.51  Aligned_cols=83  Identities=27%  Similarity=0.523  Sum_probs=69.6

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...++|+| |..  .+|||++.++.+......|+||..|.++|||+++|+|++||+|++|||+++.++++.+++.+++..
T Consensus        10 ~~~~~v~l-~~~--~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~   86 (106)
T 3axa_A           10 PEIITVTL-KKQ--NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRT   86 (106)
T ss_dssp             CCEEEEEE-ECS--SSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             ceEEEEEE-CCC--CccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            45677888 553  689999998765444456999999999999999999999999999999999999999999999874


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                       +..+.|
T Consensus        87 -g~~v~l   92 (106)
T 3axa_A           87 -SSVVTL   92 (106)
T ss_dssp             -CSEEEE
T ss_pred             -CCeEEE
Confidence             455443

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.59  E-value=6.2e-15  Score=110.84  Aligned_cols=85  Identities=15%  Similarity=0.309  Sum_probs=77.1

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      ..+++.|.++....|||.+..+...   .|++|..|.++|||+++| |+.||+|++|||+++.++++.++..+++..+..
T Consensus        13 dp~~~~l~~~~~~~~G~~l~~~~~~---~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   88 (114)
T 2edz_A           13 NPRECKLSKQEGQNYGFFLRIEKDT---DGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNS   88 (114)
T ss_dssp             CCEEEEEECCTTCCCSCEEECCTTC---CSCEEECCCTTCTTGGGT-CCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSE
T ss_pred             CCEEEEEeCCCCCcccEEEEEecCC---CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            3578999998889999999876443   589999999999999999 999999999999999999999999999988899


Q ss_pred             EEEEEEeCC
Q psy8436          84 VEIVICRNP   92 (306)
Q Consensus        84 v~L~v~r~~   92 (306)
                      |.|+|.|..
T Consensus        89 v~l~v~R~~   97 (114)
T 2edz_A           89 VTLLVLDGD   97 (114)
T ss_dssp             EEEEEECHH
T ss_pred             EEEEEEECC
Confidence            999999864

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.59  E-value=3.1e-15  Score=110.43  Aligned_cols=86  Identities=16%  Similarity=0.293  Sum_probs=75.0

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      +..+|.|..  ..+|||+|.++....  .+++|..|.++|||+++| |+.||+|++|||+++.++++.++..+++.+++.
T Consensus         5 ~~~~v~l~~--~~~~G~~l~gg~~~~--~~v~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~   79 (103)
T 1wf7_A            5 SSGSVSLVG--PAPWGFRLQGGKDFN--MPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGS   79 (103)
T ss_dssp             CCEEEEEES--SSCCSCCEEEETTTT--EEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCSSE
T ss_pred             CEEEEEEeC--CCccCEEEeccccCC--CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            456777773  478999999986543  569999999999999999 999999999999999999999999999988889


Q ss_pred             EEEEEEeCCCC
Q psy8436          84 VEIVICRNPDD   94 (306)
Q Consensus        84 v~L~v~r~~~~   94 (306)
                      +.|+|.|....
T Consensus        80 v~l~v~R~g~~   90 (103)
T 1wf7_A           80 LNMTLQRASAA   90 (103)
T ss_dssp             EEEEECCCSCC
T ss_pred             EEEEEEeCCCc
Confidence            99999887643

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.59  E-value=6.7e-15  Score=105.81  Aligned_cols=82  Identities=35%  Similarity=0.512  Sum_probs=69.3

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...++|.|.|... .+|||++.++.+..   .|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++..
T Consensus         3 ~~~~~v~l~k~~~-~~lG~~i~~~~~~~---~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~   78 (90)
T 1qav_A            3 LQRRRVTVRKADA-GGLGISIKGGRENK---MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT   78 (90)
T ss_dssp             SSCEEEEEECCTT-TCCCEEEEEEGGGT---EEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             CccEEEEEEeCCC-CCcCEEEEcccCCC---CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            3467899999753 78999999876532   5899999999999999955999999999999999999999999999986


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      . ..+.|
T Consensus        79 ~-~~v~l   84 (90)
T 1qav_A           79 G-KEVVL   84 (90)
T ss_dssp             C-SEEEE
T ss_pred             C-CeEEE
Confidence            4 44443

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.59  E-value=2.5e-15  Score=115.16  Aligned_cols=77  Identities=30%  Similarity=0.567  Sum_probs=64.3

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCC-CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPK-GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~-~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .+.|.|.|.. ..+|||+|.++.+... +..|+||..|.++|||+++|+|++||+|++|||+++.+++|.+|+.+|+..
T Consensus        26 ~~~v~l~k~~-~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~  103 (127)
T 1wg6_A           26 TLEIPLNDSG-SAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRS  103 (127)
T ss_dssp             EEEEECSSST-TTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHH
T ss_pred             EEEEEEeeCC-CCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHh
Confidence            4456665443 4799999998765321 124899999999999999999999999999999999999999999999976

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.58  E-value=1.8e-14  Score=108.88  Aligned_cols=85  Identities=33%  Similarity=0.541  Sum_probs=71.4

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCC------CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPK------GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAI  292 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~------~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav  292 (306)
                      ...++|.|.|... .+|||+|.++.+...      ...|+||..|.++|||+++|+|++||+|++|||+++.+++|.+++
T Consensus        14 ~~~~~v~l~k~~~-~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~   92 (117)
T 2ehr_A           14 GPPRIVEIFREPN-VSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAV   92 (117)
T ss_dssp             CCCEEEEECCCSS-SCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHH
T ss_pred             CCCEEEEEEeCCC-CccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            4567899998853 789999999876421      135899999999999999988999999999999999999999999


Q ss_pred             HHHhhcCCCceec
Q psy8436         293 AMFKDIFPQSSKL  305 (306)
Q Consensus       293 ~~Lk~~~~~~~~l  305 (306)
                      .+|+.. +..+.|
T Consensus        93 ~~~~~~-g~~v~l  104 (117)
T 2ehr_A           93 EAIKNA-GNPVVF  104 (117)
T ss_dssp             HHHHTS-CSSEEE
T ss_pred             HHHHcC-CCeEEE
Confidence            999984 444443

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.58  E-value=6.9e-15  Score=109.23  Aligned_cols=83  Identities=18%  Similarity=0.292  Sum_probs=72.9

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      ...|+|.|.|. ..+|||.+.+.      .+++|..|.++|||+++| |+.||+|++|||+++.+++++++..+++.+++
T Consensus        22 ~~~r~v~l~k~-~~~~G~~l~~~------~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~   93 (109)
T 2vsv_A           22 SMPRSIRFTAE-EGDLGFTLRGN------APVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGE   93 (109)
T ss_dssp             HSCEEEEECCG-GGCCCEEEESS------SSCEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTT
T ss_pred             CCCEEEEEEeC-CCceeEEEeCC------CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            45789999995 57999999643      468999999999999999 99999999999999999999999999998877


Q ss_pred             e-EEEEEEeCCC
Q psy8436          83 H-VEIVICRNPD   93 (306)
Q Consensus        83 ~-v~L~v~r~~~   93 (306)
                      . |.|+|.|...
T Consensus        94 ~~v~l~V~~~~~  105 (109)
T 2vsv_A           94 DEIEMKVVSLLD  105 (109)
T ss_dssp             SCEEEEEESCC-
T ss_pred             CeEEEEEEECCC
Confidence            5 9999988643

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.58  E-value=2e-14  Score=106.76  Aligned_cols=85  Identities=38%  Similarity=0.560  Sum_probs=70.7

Q ss_pred             ccceEEEEEEeCCCCCcccEEEEcCCCCC-----CCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy8436         218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSP-----KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAI  292 (306)
Q Consensus       218 ~~~~~~v~l~k~~~~~~lG~~l~gg~~~~-----~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav  292 (306)
                      .+..++|+|.|..  .+|||+|.++.+..     ....|+||..|.++|||+++|+|++||+|++|||+++.+++|.+++
T Consensus         6 ~~~~~~v~l~k~~--~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~   83 (107)
T 1uhp_A            6 SGKSLTLVLHRDS--GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAV   83 (107)
T ss_dssp             SSEEEEEEECCSS--SCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHH
T ss_pred             CcEEEEEEEEeCC--CccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            3667889999883  78999999887531     1236899999999999999955999999999999999999999999


Q ss_pred             HHHhhcCCCceec
Q psy8436         293 AMFKDIFPQSSKL  305 (306)
Q Consensus       293 ~~Lk~~~~~~~~l  305 (306)
                      .+|+... ..+.|
T Consensus        84 ~~~~~~~-~~v~l   95 (107)
T 1uhp_A           84 EAFKTAK-EPIVV   95 (107)
T ss_dssp             HHHHHCC-SSEEE
T ss_pred             HHHHcCC-CcEEE
Confidence            9999854 44443

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.58  E-value=6.9e-15  Score=105.04  Aligned_cols=80  Identities=29%  Similarity=0.466  Sum_probs=67.5

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP  300 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~  300 (306)
                      +++|+|.|... .+|||++.++.+..   .|++|..|.++|||+++++|++||+|++|||+++.+++|.+++.+|++.. 
T Consensus         3 ~~~v~l~~~~~-~~lG~~i~~~~~~~---~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-   77 (87)
T 4e34_A            3 IRKVLLLKEDH-EGLGISITGGKEHG---VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR-   77 (87)
T ss_dssp             CEEEEEECCTT-BCCCEEEEEEGGGT---EEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCC-
T ss_pred             EEEEEEEECCC-CcccEEEEccCCCC---CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-
Confidence            56899998863 78999999876542   57999999999999995349999999999999999999999999999754 


Q ss_pred             Cceec
Q psy8436         301 QSSKL  305 (306)
Q Consensus       301 ~~~~l  305 (306)
                      ..+.|
T Consensus        78 ~~v~l   82 (87)
T 4e34_A           78 GEIEF   82 (87)
T ss_dssp             SEEEE
T ss_pred             CeEEE
Confidence            34443

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.58  E-value=1.1e-14  Score=106.55  Aligned_cols=85  Identities=13%  Similarity=0.199  Sum_probs=71.9

Q ss_pred             EEEEEeCCCCceeEEEEecCCCCc-----CCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           7 VFRVVKDDSNELGIYIERQDGGAH-----FSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         7 ~v~l~r~~~~~lG~~i~gg~~~~~-----~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      +|.|.| .+.+|||++.++.....     ..|++|..|.++|||+++| |+.||+|++|||+++.++++.++..+++.++
T Consensus         5 ~v~l~~-~~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g   82 (99)
T 3khf_A            5 PIVIHS-SGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSG   82 (99)
T ss_dssp             CEEEEC--CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred             CEEEEe-CCCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            466777 67899999987642110     1267899999999999999 9999999999999999999999999999999


Q ss_pred             CeEEEEEEeCCC
Q psy8436          82 SHVEIVICRNPD   93 (306)
Q Consensus        82 ~~v~L~v~r~~~   93 (306)
                      +.+.|+|.|...
T Consensus        83 ~~v~l~v~r~~~   94 (99)
T 3khf_A           83 NKISLRTTALEN   94 (99)
T ss_dssp             SEEEEEEECSCS
T ss_pred             CEEEEEEEECCC
Confidence            999999998654

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.58  E-value=4.6e-15  Score=112.07  Aligned_cols=85  Identities=36%  Similarity=0.610  Sum_probs=72.2

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCC-CCCHHHHHHHHhh
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLE-NKTHAEAIAMFKD  297 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~-~~~~~eav~~Lk~  297 (306)
                      ..++.|.|.|... .+|||++.++.+...+..|+||..|.++|||+++|+|++||+|++|||+++. ++++++++.+|+.
T Consensus        19 ~~~~~v~l~k~~~-~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~   97 (117)
T 2o2t_A           19 RHVEVFELLKPPS-GGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQK   97 (117)
T ss_dssp             SCEEEEEEECCSS-SCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEEEECCC-CCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc
Confidence            4578899999863 7899999988765544579999999999999999999999999999999998 9999999999998


Q ss_pred             cCCCceec
Q psy8436         298 IFPQSSKL  305 (306)
Q Consensus       298 ~~~~~~~l  305 (306)
                      . +..+.|
T Consensus        98 ~-~~~v~l  104 (117)
T 2o2t_A           98 A-KDTVQL  104 (117)
T ss_dssp             C-CSEEEE
T ss_pred             C-CCEEEE
Confidence            4 455544

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.58  E-value=1.3e-14  Score=105.83  Aligned_cols=83  Identities=27%  Similarity=0.516  Sum_probs=70.0

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCC-CCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSP-KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~-~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ..++|.|.|..  .+|||++.++.+.. ....|++|..|.++|||+++|+|++||+|++|||+++.+++++++..+|+. 
T Consensus         3 ~~~~v~l~k~~--~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-   79 (97)
T 2jil_A            3 RTVEVTLHKEG--NTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-   79 (97)
T ss_dssp             EEEEEEEECBT--TBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-
T ss_pred             eEEEEEEEeCC--CccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-
Confidence            45678888864  68999999886532 113689999999999999998899999999999999999999999999998 


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      ++..+.|
T Consensus        80 ~g~~v~l   86 (97)
T 2jil_A           80 CGQEAAL   86 (97)
T ss_dssp             SCSEEEE
T ss_pred             CCCeEEE
Confidence            6666554

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.58  E-value=1.6e-14  Score=103.81  Aligned_cols=78  Identities=27%  Similarity=0.486  Sum_probs=68.5

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      ..+.|.|.|+.  .+|||++.++.+.    .|++|..|.++|||+++| |++||+|++|||+++.+++|+++..+|+.. 
T Consensus         4 ~~r~v~l~k~~--~g~G~~~~~~~~~----~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-   75 (90)
T 2he4_A            4 RPRLCHLRKGP--QGYGFNLHSDKSR----PGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKAR-   75 (90)
T ss_dssp             CCEEEEEECBT--TBCCEEEEECSSS----SSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHTTS-
T ss_pred             CcEEEEEEECC--CCccEEEEccCCC----CCEEEEEECCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            45789999985  6899999987753    589999999999999999 999999999999999999999999999986 


Q ss_pred             CCceec
Q psy8436         300 PQSSKL  305 (306)
Q Consensus       300 ~~~~~l  305 (306)
                      +..+.|
T Consensus        76 ~~~v~l   81 (90)
T 2he4_A           76 EDEARL   81 (90)
T ss_dssp             SSEEEE
T ss_pred             CCcEEE
Confidence            455543

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.58  E-value=1.1e-14  Score=111.87  Aligned_cols=86  Identities=27%  Similarity=0.487  Sum_probs=73.3

Q ss_pred             CCCccceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy8436         215 KSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM  294 (306)
Q Consensus       215 ~~~~~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~  294 (306)
                      ........+|.|.++.  .+|||++.++.+.   ..+++|..|.++|+|+++|+|++||+|++|||+++.+++|.+++.+
T Consensus        13 ~~~~g~~~~v~l~~~~--~g~G~~i~g~~~~---~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~   87 (129)
T 2kpk_A           13 SELKGKFIHTKLRKSS--RGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKI   87 (129)
T ss_dssp             TTSCSEEEEEEEEECS--SCCSEEEEEEEET---TEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHH
T ss_pred             hhcCCcEEEEEEEECC--CcccEEEeCccCC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            3445677889999975  6899999986642   2579999999999999999999999999999999999999999999


Q ss_pred             HhhcC-CCceec
Q psy8436         295 FKDIF-PQSSKL  305 (306)
Q Consensus       295 Lk~~~-~~~~~l  305 (306)
                      |+..+ +..+.|
T Consensus        88 l~~~~~g~~v~l   99 (129)
T 2kpk_A           88 FQSIPIGASVDL   99 (129)
T ss_dssp             HHHSCTTEEEEE
T ss_pred             HHhCCCCCeEEE
Confidence            99987 555544

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.58  E-value=5.1e-15  Score=108.80  Aligned_cols=88  Identities=24%  Similarity=0.410  Sum_probs=75.2

Q ss_pred             cccEEEEEEeC-CCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           3 KQFKVFRVVKD-DSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         3 ~~~~~v~l~r~-~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      .+++.|.|.+. ...+|||+|.++....  .|++|..|.+++||+++| |++||+|++|||+++.++++.+++..++.. 
T Consensus         7 ~~~~~v~l~~~~~~~~lG~~~~~~~~~~--~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~-   82 (101)
T 1uez_A            7 GEVRLVSLRRAKAHEGLGFSIRGGSEHG--VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGS-   82 (101)
T ss_dssp             CCCEEECCCCCCTTTCSSEEEEECTTTT--CCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSS-
T ss_pred             CccEEEEEEECCCCCcccEEEeCCCCCC--CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHhhcCC-
Confidence            47888999884 5679999999885432  589999999999999999 999999999999999999998888777664 


Q ss_pred             CeEEEEEEeCCCC
Q psy8436          82 SHVEIVICRNPDD   94 (306)
Q Consensus        82 ~~v~L~v~r~~~~   94 (306)
                      ..|.|+|.|....
T Consensus        83 ~~v~l~v~R~g~~   95 (101)
T 1uez_A           83 KKLVLSVYSAGRI   95 (101)
T ss_dssp             SSCCEEECCCCCC
T ss_pred             CeEEEEEEECCcc
Confidence            5789999887543

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=99.35  E-value=1.6e-16  Score=119.05  Aligned_cols=83  Identities=31%  Similarity=0.523  Sum_probs=74.0

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcc-cCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHR-DGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~-~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      .+++|.|.|+.+.+|||++.++....  .|++|..|.++|||++ +| |++||+|++|||+++.++++.+++.+++.+++
T Consensus        27 ~~~~v~l~k~~~~glG~~l~~g~~~~--~gv~V~~V~~~spA~~~aG-L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~  103 (112)
T 2lob_A           27 GIRKVLLLKEDHEGLGISITGGKEHG--VPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQRG  103 (112)
Confidence            46789999988899999999875432  5799999999999999 67 99999999999999999999999999998887


Q ss_pred             eEEEEEE
Q psy8436          83 HVEIVIC   89 (306)
Q Consensus        83 ~v~L~v~   89 (306)
                      .|+|+|.
T Consensus       104 ~v~l~V~  110 (112)
T 2lob_A          104 EIEFEVV  110 (112)
Confidence            8888875

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.57  E-value=1e-14  Score=108.57  Aligned_cols=84  Identities=33%  Similarity=0.624  Sum_probs=73.4

Q ss_pred             cceEEEEEEeCCCCCcccEEEE-----cCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIV-----GGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIA  293 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~-----gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~  293 (306)
                      .+.++|+|.|..  .+|||++.     |+.+......|+||..|.++|||+++|+|++||+|++|||+++.++++.+++.
T Consensus         8 ~~~~~v~l~k~~--~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~   85 (108)
T 1q7x_A            8 GDIFEVELAKND--NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE   85 (108)
T ss_dssp             SSEEEEEEESSS--CSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHH
T ss_pred             CcEEEEEEEECC--CCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            567899999885  68999999     88776555579999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCceec
Q psy8436         294 MFKDIFPQSSKL  305 (306)
Q Consensus       294 ~Lk~~~~~~~~l  305 (306)
                      +++.. +..+.|
T Consensus        86 ~~~~~-g~~v~l   96 (108)
T 1q7x_A           86 TLRNT-GQVVHL   96 (108)
T ss_dssp             HHHHT-TSEEEE
T ss_pred             HHHcC-CCeEEE
Confidence            99985 455544

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.57  E-value=1.8e-14  Score=111.10  Aligned_cols=83  Identities=22%  Similarity=0.304  Sum_probs=68.8

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCC---------CCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHH
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSP---------KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE  290 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~---------~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~e  290 (306)
                      ..++|+|.|.. ..+|||+|.++.+..         ....|+||..|.++|+|+++| |++||+|++|||+++.++++.+
T Consensus        27 ~~r~v~l~r~~-~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~  104 (132)
T 3l4f_D           27 KEKTVLLQKKD-SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQ  104 (132)
T ss_dssp             CCCEEEEECCT-TSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEESSSBCTTSCHHH
T ss_pred             CCEEEEEEECC-CCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHH
Confidence            44689999865 378999999987631         112379999999999999999 9999999999999999999999


Q ss_pred             HHHHHhhcCCCceec
Q psy8436         291 AIAMFKDIFPQSSKL  305 (306)
Q Consensus       291 av~~Lk~~~~~~~~l  305 (306)
                      ++.+|++. +..+.|
T Consensus       105 ~~~~l~~~-g~~v~l  118 (132)
T 3l4f_D          105 VVNMIRQG-GNTLMV  118 (132)
T ss_dssp             HHHHHHHT-TTEEEE
T ss_pred             HHHHHHcC-CCEEEE
Confidence            99999984 444443

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.57  E-value=1.6e-14  Score=105.47  Aligned_cols=83  Identities=14%  Similarity=0.295  Sum_probs=71.9

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC-
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS-   82 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~-   82 (306)
                      ..+.+.|.+. ..+|||++.++...   .|++|..|.++|||+++| |++||+|++|||+++.+++++++..+|+..+. 
T Consensus         9 ~~~~~~l~~~-~~g~G~~~~~~~~~---~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   83 (98)
T 2jxo_A            9 RPRLCTMKKG-PSGYGFNLHSDKSK---PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDE   83 (98)
T ss_dssp             CCEEEEEECT-TTCCCEEEECCCSS---SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTE
T ss_pred             CcEEEEEEeC-CCcccEEEEecCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc
Confidence            4578889985 56999999877543   489999999999999999 99999999999999999999999999998855 


Q ss_pred             eEEEEEEeC
Q psy8436          83 HVEIVICRN   91 (306)
Q Consensus        83 ~v~L~v~r~   91 (306)
                      .+.|+|.|.
T Consensus        84 ~~~l~v~R~   92 (98)
T 2jxo_A           84 TKLLVVDRE   92 (98)
T ss_dssp             EEEEECCHH
T ss_pred             EEEEEEECC
Confidence            456888764

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.57  E-value=3.5e-14  Score=102.24  Aligned_cols=81  Identities=22%  Similarity=0.384  Sum_probs=69.5

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .+.++|.|.|..+..+|||++.++.+.    .|++|..|.++|||+++| |++||+|++|||+++.++++.+++.++++.
T Consensus         5 ~~~~~v~l~k~~~~~~~G~~~~~~~~~----~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   79 (91)
T 1m5z_A            5 VELHKVTLYKDSGMEDFGFSVADGLLE----KGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAES   79 (91)
T ss_dssp             CEEEEEEEECCTTCSSSSEEEEECTTS----SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred             cceEEEEEEECCCCCCccEEEEeccCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            567889999986556899999987653    589999999999999999 999999999999999999999999999864


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                       +..+.|
T Consensus        80 -g~~v~l   85 (91)
T 1m5z_A           80 -GNKLDL   85 (91)
T ss_dssp             -TTEEEE
T ss_pred             -CCEEEE
Confidence             444443

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=2.6e-14  Score=108.46  Aligned_cols=84  Identities=36%  Similarity=0.683  Sum_probs=72.0

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCC--CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK  296 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~--~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk  296 (306)
                      ..++.|.|.|..  .+|||+|.++.+.+.  ...|++|..|.++++|+++|+|++||+|++|||+++.+++|.+++.+|+
T Consensus        16 ~~~~~v~l~r~~--~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~   93 (120)
T 2eno_A           16 VTEEEINLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR   93 (120)
T ss_dssp             EEEEEEEEECCS--SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHH
T ss_pred             CceEEEEEEECC--CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            457889999986  789999999877532  2368999999999999999999999999999999999999999999999


Q ss_pred             hcCCCceec
Q psy8436         297 DIFPQSSKL  305 (306)
Q Consensus       297 ~~~~~~~~l  305 (306)
                      +. ...+.|
T Consensus        94 ~~-g~~v~l  101 (120)
T 2eno_A           94 NA-GYAVSL  101 (120)
T ss_dssp             HH-CSEEEE
T ss_pred             cC-CCeEEE
Confidence            86 344443

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.57  E-value=9.2e-15  Score=109.73  Aligned_cols=84  Identities=29%  Similarity=0.563  Sum_probs=70.9

Q ss_pred             cceEEEEEEeCCCCCcccEEEEc---CCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVG---GRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMF  295 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~g---g~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~L  295 (306)
                      .+.+.|.|.|..  .+|||++.+   +.+......|+||..|.++|||+++|+|++||+|++|||+++.++++.+++.++
T Consensus         3 ~~~~~v~l~k~~--~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~   80 (113)
T 2g5m_B            3 MELFPVELEKDS--EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVL   80 (113)
T ss_dssp             CEEEEEECCCCS--SCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHH
T ss_pred             eEEEEEEEEeCC--CCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            356788888874  689999998   555443457999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCceec
Q psy8436         296 KDIFPQSSKL  305 (306)
Q Consensus       296 k~~~~~~~~l  305 (306)
                      +.. +..+.|
T Consensus        81 ~~~-g~~v~l   89 (113)
T 2g5m_B           81 RNT-KGRVRF   89 (113)
T ss_dssp             HHS-CSSCEE
T ss_pred             hcC-CCeEEE
Confidence            986 454443

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=99.57  E-value=8.8e-15  Score=108.13  Aligned_cols=83  Identities=22%  Similarity=0.306  Sum_probs=71.3

Q ss_pred             cEEEEEEeCCCCceeEEEEecCC-----CCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDG-----GAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN   79 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~-----~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~   79 (306)
                      .+.+.|.|..+++|||+|.+...     .....+++|..|.++|||+++| |++||+|++|||+++.+++++++..+|+.
T Consensus        16 ~~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~   94 (104)
T 2z17_A           16 RKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIRS   94 (104)
T ss_dssp             CCEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHh
Confidence            46778999878899999998421     1122589999999999999999 99999999999999999999999999999


Q ss_pred             CCCeEEEEE
Q psy8436          80 KDSHVEIVI   88 (306)
Q Consensus        80 ~~~~v~L~v   88 (306)
                      .++.|.|+|
T Consensus        95 ~~~~v~l~v  103 (104)
T 2z17_A           95 SGNLLTIET  103 (104)
T ss_dssp             TTTEEEEEC
T ss_pred             CCCcEEEEE
Confidence            877888775

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.57  E-value=2.2e-14  Score=104.38  Aligned_cols=80  Identities=26%  Similarity=0.406  Sum_probs=67.4

Q ss_pred             ceEEEEEEeCCCCCcccEEEEc-------CCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVG-------GRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAI  292 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~g-------g~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav  292 (306)
                      ..++|.|.|.+. .+|||+|.+       +.+.   ..|++|..|.++|||+++| |++||+|++|||+++.+++++++.
T Consensus         4 ~~r~v~l~k~~~-~~~Gf~l~~~g~~~~~~~~~---~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~   78 (96)
T 2ego_A            4 QRKVLTLEKGDN-QTFGFEIQTYGLHHREEQRV---EMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIV   78 (96)
T ss_dssp             CEEEEEEECCTT-CCCSEEEEEEEC-------C---CEEEEEEEECTTCHHHHTT-CCTTCEEEEETTEECTTCCHHHHH
T ss_pred             ccEEEEEEeCCC-CCccEEEEeccccccCCCCC---CCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHH
Confidence            467899999873 689999987       2221   2589999999999999999 999999999999999999999999


Q ss_pred             HHHhhcCCCceec
Q psy8436         293 AMFKDIFPQSSKL  305 (306)
Q Consensus       293 ~~Lk~~~~~~~~l  305 (306)
                      .+|+..+. .+.|
T Consensus        79 ~~l~~~~~-~v~l   90 (96)
T 2ego_A           79 DIIKASGN-VLRL   90 (96)
T ss_dssp             HHHHHTTT-EEEE
T ss_pred             HHHHhCCC-eEEE
Confidence            99998854 5554

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.57  E-value=2.5e-14  Score=109.32  Aligned_cols=82  Identities=27%  Similarity=0.406  Sum_probs=71.6

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...++|+|.|... .+|||++.++.+..   .+++|..|.++|||+++|+|++||+|++|||+++.+++|++++.+|++.
T Consensus        18 ~~~~~v~l~k~~~-~~lG~~i~gg~~~~---~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~   93 (125)
T 3hpk_A           18 TVPGKVTLQKDAQ-NLIGISIGGGAQYC---PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV   93 (125)
T ss_dssp             EEEEEEEEECCTT-SCCCEEEEECSSCC---SSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHS
T ss_pred             CCCeEEEEEeCCC-CCcCEEEeccCCCC---CCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            4567889988864 78999999987642   5899999999999999999999999999999999999999999999997


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      ++. +.|
T Consensus        94 ~~~-v~l   99 (125)
T 3hpk_A           94 KGE-VTI   99 (125)
T ss_dssp             CSE-EEE
T ss_pred             CCe-EEE
Confidence            654 443

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.57  E-value=2.6e-14  Score=106.32  Aligned_cols=86  Identities=23%  Similarity=0.495  Sum_probs=71.0

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCC--CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK  296 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~--~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk  296 (306)
                      .+.+.|.|.+..+..+|||++.++.+...  ...|++|..|.+++||+++|+|++||+|++|||+++.++++.+++.+|+
T Consensus        11 ~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~   90 (108)
T 2jre_A           11 FSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLR   90 (108)
T ss_dssp             CEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHH
T ss_pred             cEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            56778888643335799999998866432  2358999999999999999999999999999999999999999999998


Q ss_pred             hcCCCceec
Q psy8436         297 DIFPQSSKL  305 (306)
Q Consensus       297 ~~~~~~~~l  305 (306)
                      . .+..+.|
T Consensus        91 ~-~g~~v~l   98 (108)
T 2jre_A           91 N-AGNPVRL   98 (108)
T ss_dssp             H-HCSEEEE
T ss_pred             c-CCCeEEE
Confidence            8 4555443

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.56  E-value=1.4e-14  Score=105.80  Aligned_cols=83  Identities=31%  Similarity=0.473  Sum_probs=70.6

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCC---CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPK---GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~---~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      ++.|+|.|.. ..+|||++.++.+...   ...|++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+|+.
T Consensus         6 ~~~v~l~k~~-~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~   84 (98)
T 1ihj_A            6 IHMVTLDKTG-KKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE   84 (98)
T ss_dssp             EEEEEEECTT-SSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EEEEEEEeCC-CCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            5789999954 3799999998876442   12489999999999999998899999999999999999999999999998


Q ss_pred             cCCCceec
Q psy8436         298 IFPQSSKL  305 (306)
Q Consensus       298 ~~~~~~~l  305 (306)
                       ++..+.|
T Consensus        85 -~g~~v~l   91 (98)
T 1ihj_A           85 -ADFKIEL   91 (98)
T ss_dssp             -SCSEEEE
T ss_pred             -CCCeEEE
Confidence             5666554

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.56  E-value=4.6e-14  Score=107.13  Aligned_cols=87  Identities=29%  Similarity=0.442  Sum_probs=73.6

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCC-cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--C
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--D   81 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~-~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~   81 (306)
                      ...|.+.+ ...+|||+|.++.... ...+++|..|.++|||+++|+|++||+|++|||+++.+++++++..+|+.+  +
T Consensus        31 ~~~v~l~~-~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g  109 (121)
T 2kom_A           31 RLNIQLKK-GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKME  109 (121)
T ss_dssp             EEEEEEEC-CTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSS
T ss_pred             EEEEEEEc-CCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCC
Confidence            45566777 5569999999875321 125799999999999999999999999999999999999999999999985  6


Q ss_pred             CeEEEEEEeCC
Q psy8436          82 SHVEIVICRNP   92 (306)
Q Consensus        82 ~~v~L~v~r~~   92 (306)
                      ..|.|+|.|..
T Consensus       110 ~~v~l~v~R~g  120 (121)
T 2kom_A          110 GTVSLLVFRQE  120 (121)
T ss_dssp             CEEEEEEEECC
T ss_pred             CEEEEEEEeCC
Confidence            78999998864

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.56  E-value=3.1e-14  Score=102.10  Aligned_cols=77  Identities=19%  Similarity=0.314  Sum_probs=66.2

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      ....+....+...+|||.+.        .| +|..|.++|||+++| |+.||+|++|||+++.++++.++..+|+.++..
T Consensus        12 ~~~~~i~~~~~~~~lG~~~~--------~G-~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~   81 (90)
T 1y7n_A           12 VTTVLIRRPDLRYQLGFSVQ--------NG-IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGE   81 (90)
T ss_dssp             CEEEEEEESSTTSCCCEEEE--------TT-EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCCEE
T ss_pred             cceEEEEeCCCccccCeEec--------CC-EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            33444444456779999996        24 899999999999999 999999999999999999999999999988889


Q ss_pred             EEEEEEe
Q psy8436          84 VEIVICR   90 (306)
Q Consensus        84 v~L~v~r   90 (306)
                      |.|+|.+
T Consensus        82 v~l~v~p   88 (90)
T 1y7n_A           82 IHMKTMP   88 (90)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEE
Confidence            9999875

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.56  E-value=3.4e-14  Score=103.74  Aligned_cols=82  Identities=34%  Similarity=0.593  Sum_probs=70.4

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...++|.|.|..  .+|||++.++.+...  .|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++..
T Consensus         3 g~~~~v~l~~~~--~~lG~~l~~~~~~~~--~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   78 (98)
T 2opg_A            3 GCETTIEISKGR--TGLGLSIVGGSDTLL--GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQT   78 (98)
T ss_dssp             CEEEEEEEECBT--TBTCEEEEECTTSTT--CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             CCEEEEEEEECC--CcccEEEecCCCCCC--CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            456789999884  689999998876532  4899999999999999999999999999999999999999999999876


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      + ..+.|
T Consensus        79 ~-~~v~l   84 (98)
T 2opg_A           79 P-QRVRL   84 (98)
T ss_dssp             C-SEEEE
T ss_pred             C-CeEEE
Confidence            6 44443

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.56  E-value=3e-14  Score=109.47  Aligned_cols=86  Identities=23%  Similarity=0.446  Sum_probs=72.7

Q ss_pred             ccceEEEEEEeCCCCCcccEEEEcCCCCCC--CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy8436         218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMF  295 (306)
Q Consensus       218 ~~~~~~v~l~k~~~~~~lG~~l~gg~~~~~--~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~L  295 (306)
                      ..+.+.|.|.+.. ..+|||++.++.+...  ...|++|..|.++|||+++|+|++||+|++|||+++.++++++++.+|
T Consensus        13 ~~~~~~v~l~~~~-~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l   91 (129)
T 2dmz_A           13 LFETYNVELVRKD-GQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVL   91 (129)
T ss_dssp             CEEEEEEEECCCT-TCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHH
T ss_pred             CCcEEEEEEEeCC-CCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            3667889996654 3789999998765433  346899999999999999999999999999999999999999999999


Q ss_pred             hhcCCCceec
Q psy8436         296 KDIFPQSSKL  305 (306)
Q Consensus       296 k~~~~~~~~l  305 (306)
                      +. .+..+.|
T Consensus        92 ~~-~~~~v~l  100 (129)
T 2dmz_A           92 RN-AGQVVHL  100 (129)
T ss_dssp             HH-CCSSEEE
T ss_pred             Hc-CCCeEEE
Confidence            98 6666554

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=2.2e-14  Score=103.70  Aligned_cols=80  Identities=31%  Similarity=0.585  Sum_probs=68.3

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      ..++|+|.|..  .+|||++.++.+..   .+++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+|+...
T Consensus         5 ~~r~v~l~k~~--~glG~~l~~~~~~~---~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   79 (93)
T 2dkr_A            5 SSGVVELPKTD--EGLGFNIMGGKEQN---SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQ   79 (93)
T ss_dssp             CSCEEEEECCT--TCCCEEEECSSSSS---CCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCC
T ss_pred             CCEEEEEEeCC--CCccEEEecccCCC---CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            34579999884  78999999876542   58999999999999999669999999999999999999999999999865


Q ss_pred             CCceec
Q psy8436         300 PQSSKL  305 (306)
Q Consensus       300 ~~~~~l  305 (306)
                      . .+.|
T Consensus        80 ~-~v~l   84 (93)
T 2dkr_A           80 G-SVKL   84 (93)
T ss_dssp             S-EEEE
T ss_pred             C-cEEE
Confidence            3 4443

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.56  E-value=5.1e-14  Score=104.01  Aligned_cols=80  Identities=34%  Similarity=0.653  Sum_probs=69.2

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.|.|.|.++ .+|||++.++.+..   .|++|..|.+++||+++| |++||+|++|||+++.++++++++.+|+. 
T Consensus        14 ~~~~~v~l~k~~~-~~lG~~~~~~~~~~---~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~-   87 (104)
T 1wi2_A           14 FLPRIVTLKKPPG-AQLGFNIRGGKASQ---LGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKT-   87 (104)
T ss_dssp             SCCEEEEECCCTT-CCCSEEEECCSSSC---CCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHH-
T ss_pred             CCCEEEEEEeCCC-CCccEEEEcccCCC---CCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC-
Confidence            4467899999864 68999999876542   589999999999999999 99999999999999999999999999998 


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                       ...+.|
T Consensus        88 -~~~v~l   93 (104)
T 1wi2_A           88 -AREISM   93 (104)
T ss_dssp             -SSSEEE
T ss_pred             -CCEEEE
Confidence             444443

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.56  E-value=1.8e-14  Score=106.74  Aligned_cols=73  Identities=40%  Similarity=0.640  Sum_probs=64.0

Q ss_pred             CCcccEEEEcCCCCCC--CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436         232 QKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL  305 (306)
Q Consensus       232 ~~~lG~~l~gg~~~~~--~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l  305 (306)
                      ..+|||+|.||.+...  +..|++|.+|.++|||+++|+|++||+|++|||+++.+++|.+++.+|++... .+.|
T Consensus        12 ~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~-~v~l   86 (106)
T 4amh_A           12 SKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSD-FVYL   86 (106)
T ss_dssp             CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCS-EEEE
T ss_pred             CCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCC-eEEE
Confidence            3789999999998754  34589999999999999999999999999999999999999999999988644 5443

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.56  E-value=3.4e-14  Score=107.30  Aligned_cols=86  Identities=27%  Similarity=0.393  Sum_probs=76.1

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      +.+.|.|.+. ..+|||++.++..    .|++|..|.++|||+++| |++||+|++|||+++.++++.++..+++..++.
T Consensus        19 ~~~~v~l~~~-~~~lG~~~~~~~~----~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~   92 (117)
T 1uit_A           19 EPRHVKVQKG-SEPLGISIVSGEK----GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCDT   92 (117)
T ss_dssp             CCEEEEEECS-SCCCCEEEEECTT----SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSCCSE
T ss_pred             CCEEEEEEeC-CCCccEEEEccCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4678999985 4799999987754    479999999999999999 999999999999999999999999888888889


Q ss_pred             EEEEEEeCCCCC
Q psy8436          84 VEIVICRNPDDA   95 (306)
Q Consensus        84 v~L~v~r~~~~~   95 (306)
                      +.|+|.|.....
T Consensus        93 v~l~v~r~~~~~  104 (117)
T 1uit_A           93 ITILAQYNPHVH  104 (117)
T ss_dssp             EEEEECCCSCCC
T ss_pred             EEEEEEECCchh
Confidence            999999876544

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.55  E-value=8e-15  Score=109.68  Aligned_cols=83  Identities=29%  Similarity=0.527  Sum_probs=70.0

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCC------CCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSP------KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM  294 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~------~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~  294 (306)
                      .+.|.|.|..+ .+|||+|.++.+..      ....|++|..|.++|+|+++|+|++||+|++|||+++.++++.+++.+
T Consensus        10 ~~~v~l~k~~~-~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~   88 (111)
T 1uju_A           10 LRELCIQKAPG-ERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQL   88 (111)
T ss_dssp             SSCEEEECCTT-CCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHH
T ss_pred             cEEEEEEECCC-CccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            45688988864 78999999988532      123589999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCceec
Q psy8436         295 FKDIFPQSSKL  305 (306)
Q Consensus       295 Lk~~~~~~~~l  305 (306)
                      |+. ....+.|
T Consensus        89 l~~-~g~~v~l   98 (111)
T 1uju_A           89 LRS-VGDTLTV   98 (111)
T ss_dssp             HSS-CSSEEEE
T ss_pred             HHc-CCCeEEE
Confidence            988 4455544

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.55  E-value=3.9e-14  Score=104.02  Aligned_cols=85  Identities=24%  Similarity=0.271  Sum_probs=69.1

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ..++.|.+.|..+ .+|||++.+.... ....+++|..|.+++||+++|.|++||+|++|||+++.+.++++++.+|+..
T Consensus         8 ~~~~~v~l~k~~g-~~lG~~i~~~~~~-~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~   85 (101)
T 2yt7_A            8 DNCREVHLEKRRG-EGLGVALVESGWG-SLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRET   85 (101)
T ss_dssp             CCCEEEEEECCTT-CCCCEEEEECCCS-SSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHT
T ss_pred             CceEEEEEEeCCC-CccCEEEEeCCCC-CCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            4567899988875 6899999753221 0113699999999999999777999999999999999999999999999986


Q ss_pred             -CCCceec
Q psy8436         299 -FPQSSKL  305 (306)
Q Consensus       299 -~~~~~~l  305 (306)
                       ++..+.|
T Consensus        86 ~~g~~v~l   93 (101)
T 2yt7_A           86 KSQTSVTL   93 (101)
T ss_dssp             TTSSEEEE
T ss_pred             CCCCeEEE
Confidence             5555554

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.55  E-value=2.6e-14  Score=107.38  Aligned_cols=86  Identities=26%  Similarity=0.349  Sum_probs=75.7

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      +...++|.+.+....+|||+|.++....  .|++|..|.+++||+++| |+.||+|++|||+++.++++.++..+++.. 
T Consensus        13 ~~~~~~v~~~~~~~~~lG~~l~~~~~~~--~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~-   88 (114)
T 1x5n_A           13 ENKEKKVFISLVGSRGLGCSISSGPIQK--PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-   88 (114)
T ss_dssp             CCSSEEEEECCCSSCCCCEEEEECCSSS--CSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHC-
T ss_pred             CCCcEEEEEEEcCCCceeEEEeecCCCC--CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-
Confidence            4456888898888889999999875432  689999999999999999 999999999999999999998999999876 


Q ss_pred             CeEEEEEEeC
Q psy8436          82 SHVEIVICRN   91 (306)
Q Consensus        82 ~~v~L~v~r~   91 (306)
                      ..+.|+|.|.
T Consensus        89 ~~v~l~v~r~   98 (114)
T 1x5n_A           89 RSLTISIVAA   98 (114)
T ss_dssp             SSEEEEECSS
T ss_pred             CeEEEEEEcC
Confidence            6899999886

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.55  E-value=2.8e-14  Score=102.00  Aligned_cols=73  Identities=29%  Similarity=0.422  Sum_probs=62.9

Q ss_pred             EEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCc
Q psy8436         223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQS  302 (306)
Q Consensus       223 ~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~  302 (306)
                      .++|.+......|||.+.+         |+||.+|.++|+|+++|+|++||+|++|||+++.+++|++++.+|++.++ .
T Consensus         3 ~v~l~~~~~~~~~G~~~~~---------gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~-~   72 (88)
T 3e17_A            3 GVLLMKSRANEEYGLRLGS---------QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRG-K   72 (88)
T ss_dssp             EEEEECBTTBCCCCEEEEE---------EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTT-E
T ss_pred             EEEEEeCCCCCCCCEEEeC---------CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-e
Confidence            4666665545789999963         89999999999999999999999999999999999999999999998765 4


Q ss_pred             eec
Q psy8436         303 SKL  305 (306)
Q Consensus       303 ~~l  305 (306)
                      +.|
T Consensus        73 v~L   75 (88)
T 3e17_A           73 LQL   75 (88)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.55  E-value=6.7e-14  Score=104.63  Aligned_cols=85  Identities=29%  Similarity=0.548  Sum_probs=71.8

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.+.+.+..  .+|||++.++.+...+..|++|..|.++|||+++|+|++||+|++|||+++.++++++++.+|+..
T Consensus        10 ~~~~~~~l~~~~--~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   87 (111)
T 2koj_A           10 GKRLNIQLKKGT--EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRST   87 (111)
T ss_dssp             CEEEEEEEECBT--TBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHC
T ss_pred             CcEEEEEEEECC--CccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            456778888774  689999998776543446899999999999999988999999999999999999999999999987


Q ss_pred             C-CCceec
Q psy8436         299 F-PQSSKL  305 (306)
Q Consensus       299 ~-~~~~~l  305 (306)
                      + +..+.|
T Consensus        88 ~~g~~v~l   95 (111)
T 2koj_A           88 KMEGTVSL   95 (111)
T ss_dssp             CCSSEEEE
T ss_pred             CCCCeEEE
Confidence            4 555544

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=99.55  E-value=6.1e-16  Score=143.08  Aligned_cols=59  Identities=17%  Similarity=0.361  Sum_probs=51.3

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L~v~r~~~   93 (306)
                      .|++|..|.++|||+++| |+.||+|++|||+.+.++  .+...++..  .++.|.|+|.|+..
T Consensus       286 ~G~~V~~V~~gspA~~AG-L~~GDvI~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~  346 (448)
T 1ky9_A          286 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGK  346 (448)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred             CceEEEEeccCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence            489999999999999999 999999999999999965  567777764  47889999998653

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.55  E-value=4.1e-14  Score=110.00  Aligned_cols=92  Identities=18%  Similarity=0.301  Sum_probs=75.7

Q ss_pred             ccccEEEEEEeCCC---CceeEEEEecCCC----------CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCC
Q psy8436           2 EKQFKVFRVVKDDS---NELGIYIERQDGG----------AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL   68 (306)
Q Consensus         2 ~~~~~~v~l~r~~~---~~lG~~i~gg~~~----------~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~   68 (306)
                      +..++.|.|.+...   .+|||++.++.+.          ....|++|..|.++|||+++| |++||+|++|||+++.++
T Consensus        21 ~~~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~   99 (139)
T 2vz5_A           21 QSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMV   99 (139)
T ss_dssp             -CEEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTC
T ss_pred             CCceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEEcCCC
Confidence            45678888888532   3799999987431          113689999999999999999 999999999999999999


Q ss_pred             CHHHHHHHHhcC-CCeEEEEEEeCCCC
Q psy8436          69 TIQEAREALNNK-DSHVEIVICRNPDD   94 (306)
Q Consensus        69 ~~~~a~~~l~~~-~~~v~L~v~r~~~~   94 (306)
                      ++.++..+|+.. +..|.|+|.|+...
T Consensus       100 ~~~~~~~~l~~~~g~~v~l~v~R~g~~  126 (139)
T 2vz5_A          100 THDQARKRLTKRSEEVVRLLVTRQSLQ  126 (139)
T ss_dssp             CHHHHHHHHCCTTCSEEEEEEEECC--
T ss_pred             CHHHHHHHHHhCCCCEEEEEEEECCEE
Confidence            999999999974 57899999997654

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.55  E-value=1.7e-14  Score=107.15  Aligned_cols=78  Identities=22%  Similarity=0.424  Sum_probs=68.8

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcC-CCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENE-KLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G-~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      ...+.|.|.|... .+|||++.++.+..   .+++|..|.++|||+++| +|++||+|++|||+++.+++|.+++.+|+.
T Consensus        16 ~~~~~v~l~~~~~-~~~G~~~~gg~~~~---~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~   91 (107)
T 3nfk_A           16 DNLVLIRMKPDEN-GRFGFNVKGGYDQK---MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKA   91 (107)
T ss_dssp             CCCEEEEECCCTT-SCCCEEEEEEGGGT---EEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHC
T ss_pred             CCEEEEEEEcCCC-CCCCEEEEccCCCC---CCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            4567889988863 68999999887642   589999999999999999 599999999999999999999999999998


Q ss_pred             cCC
Q psy8436         298 IFP  300 (306)
Q Consensus       298 ~~~  300 (306)
                      ...
T Consensus        92 ~~~   94 (107)
T 3nfk_A           92 SCE   94 (107)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            764

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.55  E-value=6.4e-14  Score=102.09  Aligned_cols=81  Identities=26%  Similarity=0.405  Sum_probs=68.2

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...++|.|.+..  .+|||++.++.+.   ..+++|..|.+++||+++|+|++||+|++|||+++.++++++++.+|+. 
T Consensus         4 ~~~~~v~l~~~~--~~lG~~i~~~~~~---~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-   77 (97)
T 1n7e_A            4 AIIYTVELKRYG--GPLGITISGTEEP---FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQM-   77 (97)
T ss_dssp             CCEEEEEEECTT--SCCCEEEECCSST---TSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHT-
T ss_pred             ceEEEEEEEeCC--CCcCEEEEcccCC---CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-
Confidence            446788897773  6799999887643   2589999999999999998899999999999999999999999999984 


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      .+..+.|
T Consensus        78 ~g~~v~l   84 (97)
T 1n7e_A           78 AGETVTL   84 (97)
T ss_dssp             CCSEEEE
T ss_pred             CCCeEEE
Confidence            5555544

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.54  E-value=6.7e-14  Score=104.78  Aligned_cols=86  Identities=28%  Similarity=0.482  Sum_probs=75.9

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCC-CCCCEEEEECCEeCCCCCHHHHHHHHhcC-CC
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRF-HVGDELIKVNDKRLKGLTIQEAREALNNK-DS   82 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L-~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~   82 (306)
                      +.+|.|.+....+|||.+.+....   .+++|..|.++|||+++| | +.||+|++|||+.+.+++++++..+|+.. +.
T Consensus         2 ~~~v~l~~~~~~glG~~~~~~~~~---~~~~V~~v~~~spA~~aG-ll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~   77 (112)
T 1qau_A            2 VISVRLFKRKVGGLGFLVKERVSK---PPVIISDLIRGGAAEQSG-LIQAGDIILAVNDRPLVDLSYDSALEVLRGIASE   77 (112)
T ss_dssp             EEEEEEECBTTTBTSEEEEECSSS---SCEEEEEECTTSHHHHHT-CCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSS
T ss_pred             EEEEEEEcCCCCceeEEEEecCCC---CCEEEEEeCCCChHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            467889887778999999987543   579999999999999999 6 99999999999999999999999999875 57


Q ss_pred             eEEEEEEeCCCC
Q psy8436          83 HVEIVICRNPDD   94 (306)
Q Consensus        83 ~v~L~v~r~~~~   94 (306)
                      .+.|+|.|....
T Consensus        78 ~v~l~v~R~g~~   89 (112)
T 1qau_A           78 THVVLILRGPEG   89 (112)
T ss_dssp             SEEEEEEECCTT
T ss_pred             cEEEEEEeCCcc
Confidence            899999997654

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.54  E-value=3.8e-14  Score=108.12  Aligned_cols=83  Identities=31%  Similarity=0.508  Sum_probs=71.8

Q ss_pred             ccceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       218 ~~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      ....+.|.|.|..  .+|||++.++.+..  ..|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+|+.
T Consensus        23 ~~~~~~v~l~k~~--~glG~~l~~~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~   98 (124)
T 2daz_A           23 PGELHIIELEKDK--NGLGLSLAGNKDRS--RMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKT   98 (124)
T ss_dssp             SSEEEEEEEECCS--SCCCEEEECBSSTT--SCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHH
T ss_pred             CCceEEEEEEeCC--CccCEEEeccCCCC--cCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            3567889999984  68999999887643  2589999999999999999999999999999999999999999999988


Q ss_pred             cCCCceec
Q psy8436         298 IFPQSSKL  305 (306)
Q Consensus       298 ~~~~~~~l  305 (306)
                      .+. .+.|
T Consensus        99 ~~~-~v~l  105 (124)
T 2daz_A           99 APS-KVKL  105 (124)
T ss_dssp             SCS-EEEE
T ss_pred             CCC-eEEE
Confidence            754 4443

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.54  E-value=1.5e-14  Score=110.07  Aligned_cols=82  Identities=26%  Similarity=0.342  Sum_probs=72.6

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--C
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--D   81 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~   81 (306)
                      ....+.|.+ ...+|||++.+..     .+++|..|.++|||+++|+|++||+|++|||+++.+.+|.+++.+|+..  +
T Consensus        27 ~~~~~~l~k-~~~glG~~i~~~~-----~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G  100 (126)
T 1wif_A           27 KVIQTKLTV-GNLGLGLVVIQNG-----PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIG  100 (126)
T ss_dssp             CEEEEEEEC-CTTCCCCCEEEET-----TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSS
T ss_pred             ceEEEEEec-CCceEeEEEEcCC-----CcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCC
Confidence            456778888 4569999998743     4699999999999999999999999999999999999999999999983  6


Q ss_pred             CeEEEEEEeC
Q psy8436          82 SHVEIVICRN   91 (306)
Q Consensus        82 ~~v~L~v~r~   91 (306)
                      ..|.|+|.|+
T Consensus       101 ~~v~l~V~R~  110 (126)
T 1wif_A          101 TVLQIKAYRG  110 (126)
T ss_dssp             CEEEEEEESS
T ss_pred             CEEEEEEEEC
Confidence            7899999997

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.54  E-value=5.2e-14  Score=103.92  Aligned_cols=80  Identities=35%  Similarity=0.635  Sum_probs=68.9

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ..++.|.|.|..  .+|||++.++.+.    .|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++..
T Consensus        10 ~~~~~v~l~k~~--~glG~~~~~~~~~----~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   83 (104)
T 3i4w_A           10 REPRRIVIHRGS--TGLGFNIVGGEXG----EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA   83 (104)
T ss_dssp             SSCEEEEEECBT--TBTSEEEEECC-C----CCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred             CccEEEEEEeCC--CccCEEEECCCCC----CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            456789999984  6899999988763    4899999999999999999999999999999999999999999999884


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                       +..+.|
T Consensus        84 -~~~v~l   89 (104)
T 3i4w_A           84 -GQTVTI   89 (104)
T ss_dssp             -CSEEEE
T ss_pred             -CCeEEE
Confidence             344443

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=2.4e-14  Score=107.23  Aligned_cols=88  Identities=15%  Similarity=0.360  Sum_probs=74.9

Q ss_pred             cccEEEEEEeCCCC--ceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy8436           3 KQFKVFRVVKDDSN--ELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK   80 (306)
Q Consensus         3 ~~~~~v~l~r~~~~--~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~   80 (306)
                      +.++.|.|.|....  +|||+|.+.... ...+++|..|.++|||+++| |++||+|++|||+++.+++|.++..+++..
T Consensus        14 ~~~~~v~l~k~~~~~~~~G~~v~~~~~~-~~~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~   91 (114)
T 2d8i_A           14 KVTQSIHIEKSDTAADTYGFSLSSVEED-GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQP   91 (114)
T ss_dssp             CEEEEEEEECSCTTTCCCCCEEEEEEET-TEEEEEEEECCTTSSHHHHT-CCTTCCEEEESSCBGGGCCHHHHHHHHTSS
T ss_pred             CceEEEEEEeCCCCccccCEEEEecCcC-CcCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhCC
Confidence            45789999997663  799999875322 11479999999999999999 999999999999999999999999999864


Q ss_pred             CCeEEEEEEeCCCC
Q psy8436          81 DSHVEIVICRNPDD   94 (306)
Q Consensus        81 ~~~v~L~v~r~~~~   94 (306)
                        .+.|+|.|....
T Consensus        92 --~v~l~v~R~p~~  103 (114)
T 2d8i_A           92 --SLGLLVRTYPEL  103 (114)
T ss_dssp             --EEEEEEEECCCS
T ss_pred             --cEEEEEEECCCC
Confidence              899999997644

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.54  E-value=4.4e-14  Score=105.80  Aligned_cols=81  Identities=36%  Similarity=0.685  Sum_probs=69.5

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .+++.|.|.|..  .+|||++.++.+.   ..|++|..|.++|+|+++|+|++||+|++|||+++.++++.+++.+++..
T Consensus        23 ~~~~~v~l~~~~--~glG~~l~~~~~~---~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   97 (112)
T 2r4h_A           23 MDFYTVELERGA--KGFGFSLRGGREY---NMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNG   97 (112)
T ss_dssp             CCEEEEEEECBT--TBTSEEEEECGGG---TCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTT
T ss_pred             CceEEEEEEcCC--CccCEEEeccccC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            557889998875  6899999988653   25899999999999999988999999999999999999999999999874


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                       +..+.|
T Consensus        98 -g~~v~l  103 (112)
T 2r4h_A           98 -GRRVRL  103 (112)
T ss_dssp             -TTEEEE
T ss_pred             -CCeEEE
Confidence             444443

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.54  E-value=3.3e-14  Score=101.67  Aligned_cols=78  Identities=29%  Similarity=0.555  Sum_probs=66.0

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      ..+.|+| +++  .+|||++.++.+..   .+++|..|.+++||+++| |++||+|++|||.++.++++.+++.+++.. 
T Consensus         3 ~~~~v~l-~~~--~~~G~~l~~g~~~~---~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~-   74 (88)
T 2uzc_A            3 SNYSVSL-VGP--APWGFRLQGGKDFN---MPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGC-   74 (88)
T ss_dssp             CEEEEEE-ESS--SCCCEEEEEEGGGT---EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTC-
T ss_pred             cEEEEEE-cCC--CcccEEEECcCCCC---CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC-
Confidence            4567888 443  68999999877642   589999999999999999 999999999999999999999999999876 


Q ss_pred             CCceec
Q psy8436         300 PQSSKL  305 (306)
Q Consensus       300 ~~~~~l  305 (306)
                      +..+.|
T Consensus        75 g~~v~l   80 (88)
T 2uzc_A           75 TGSLNM   80 (88)
T ss_dssp             CSEEEE
T ss_pred             CCeEEE
Confidence            555443

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.54  E-value=2.5e-14  Score=103.80  Aligned_cols=76  Identities=25%  Similarity=0.393  Sum_probs=65.5

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      ..+.|.|.|..  .+|||.+.++.+.    .|++|..|.++|||+++| |++||+|++|||+++.+++|++++.+|+..+
T Consensus         5 ~~r~v~l~~~~--~~~G~~l~~~~~~----~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   77 (95)
T 3r68_A            5 QPRVVVIKKGS--NGYGFYLRAGPEQ----KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGG   77 (95)
T ss_dssp             CCEEEEEECBT--TBCSCEEEEC--C----CSEEEECCCTTSHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred             CcEEEEEecCC--CcccEEEEecCCC----CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            35678998874  6899999887653    489999999999999999 9999999999999999999999999999865


Q ss_pred             CCc
Q psy8436         300 PQS  302 (306)
Q Consensus       300 ~~~  302 (306)
                      ...
T Consensus        78 ~~~   80 (95)
T 3r68_A           78 DQT   80 (95)
T ss_dssp             TEE
T ss_pred             CeE
Confidence            443

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=6e-15  Score=107.37  Aligned_cols=81  Identities=20%  Similarity=0.405  Sum_probs=72.2

Q ss_pred             ccEEEEEEeCCCC-ceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           4 QFKVFRVVKDDSN-ELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         4 ~~~~v~l~r~~~~-~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      ..++|.|.|++.. +|||.+.+.      .+++|..|.++|||+ +| |+.||+|++|||+++.+++|.++..+++.+++
T Consensus         8 ~~~~v~l~~~~~~~~~G~~l~~~------~~~~V~~V~~~spA~-ag-L~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~   79 (96)
T 2edv_A            8 VRHTVKIDKDTLLQDYGFHISES------LPLTVVAVTAGGSAH-GK-LFPGDQILQMNNEPAEDLSWERAVDILREAED   79 (96)
T ss_dssp             EEEEEEECCCSSSCSCSBCCCSS------SSCBCCCBCSSSSST-TT-SCTTCBEEEESSCBSTTCCHHHHHHHHHHCSS
T ss_pred             ccEEEEEEECCCCCcccEEEecC------CCeEEEEECCCCchh-hC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            3578999997644 899999762      579999999999995 77 99999999999999999999999999998889


Q ss_pred             eEEEEEEeCC
Q psy8436          83 HVEIVICRNP   92 (306)
Q Consensus        83 ~v~L~v~r~~   92 (306)
                      .|.|+|.|+.
T Consensus        80 ~v~l~v~R~~   89 (96)
T 2edv_A           80 SLSITVVRCT   89 (96)
T ss_dssp             CEEEEEEECC
T ss_pred             eEEEEEEECC
Confidence            9999999975

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.53  E-value=2.5e-13  Score=104.16  Aligned_cols=88  Identities=22%  Similarity=0.334  Sum_probs=74.9

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      ..+++.+......+|||++.++....  .|++|..|.++|||+++| |++||+|++|||+.+.++++.+++..++.. ..
T Consensus        20 ~~~~v~v~~~~~~~lG~~~~~~~~~~--~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~   95 (128)
T 1uf1_A           20 DEKKVNLVLGDGRSLGLTIRGGAEYG--LGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS-RH   95 (128)
T ss_dssp             SEEEEEEECCSSCCCCEEEECCTTTT--CCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTC-SE
T ss_pred             cEEEEEEEECCCCccCEEEECcccCC--CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-Ce
Confidence            34677777765678999999864332  489999999999999999 999999999999999999999999999875 68


Q ss_pred             EEEEEEeCCCCC
Q psy8436          84 VEIVICRNPDDA   95 (306)
Q Consensus        84 v~L~v~r~~~~~   95 (306)
                      +.|+|.|.....
T Consensus        96 v~l~v~R~g~~~  107 (128)
T 1uf1_A           96 LILTVKDVGRLP  107 (128)
T ss_dssp             EEEEEECCSCCS
T ss_pred             EEEEEEECCccc
Confidence            999999976554

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.53  E-value=6.9e-14  Score=105.05  Aligned_cols=84  Identities=26%  Similarity=0.449  Sum_probs=69.7

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCC----CcEEEEEEcCCChhhh-cCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGN----LGIFVKTIFQSGQAAE-NEKLREGDEIIAINGVPLENKTHAEAIA  293 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~----~gi~V~~V~~~g~A~~-~G~L~~GD~Il~VNG~~v~~~~~~eav~  293 (306)
                      ...+.|.|.|... .+|||+|.++.+.....    .+++|..|.+++||++ +| |++||+|++|||+++.+++|++++.
T Consensus         9 ~~~~~v~l~~~~~-~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~ag-L~~GD~I~~ing~~v~~~~~~~~~~   86 (114)
T 1uew_A            9 LQTSDVVIHRKEN-EGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK-LKVGDRILAVNGQSIINMPHADIVK   86 (114)
T ss_dssp             CCCEEEEEECCTT-SCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSS-CCTTCBEEEETTBCTTTSCHHHHHH
T ss_pred             ccceEEEEEECCC-CCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCC-CCCCCEEEEECCEECCCCCHHHHHH
Confidence            4567899988753 78999999886653221    2679999999999999 66 9999999999999999999999999


Q ss_pred             HHhhcCCCceec
Q psy8436         294 MFKDIFPQSSKL  305 (306)
Q Consensus       294 ~Lk~~~~~~~~l  305 (306)
                      +|++ .+..+.|
T Consensus        87 ~l~~-~g~~v~l   97 (114)
T 1uew_A           87 LIKD-AGLSVTL   97 (114)
T ss_dssp             HHHH-TTTEEEE
T ss_pred             HHHc-CCCeEEE
Confidence            9998 5555544

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.53  E-value=7.5e-14  Score=105.35  Aligned_cols=83  Identities=23%  Similarity=0.349  Sum_probs=69.9

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ..++.|.|.|..+ .+|||++.++.+..  ..++||..|.++|+|+++|+|++||+|++|||+++.+++|++++.+|++ 
T Consensus        14 ~~~~~v~l~k~~~-~~lG~~i~~~~~~~--~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~-   89 (117)
T 1v62_A           14 SGPLMVEIVKTPG-SALGISLTTTSLRN--KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLAS-   89 (117)
T ss_dssp             SSSEEEEEECCTT-CCCCCEEEEECCSS--SCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHS-
T ss_pred             CCcEEEEEEcCCC-CcccEEEEccCCCC--CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-
Confidence            3467899999864 68999998876532  1359999999999999999999999999999999999999999999995 


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      .+..+.|
T Consensus        90 ~g~~v~l   96 (117)
T 1v62_A           90 ISEKVRL   96 (117)
T ss_dssp             CSSEEEE
T ss_pred             CCCeEEE
Confidence            4555544

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.53  E-value=5.3e-14  Score=100.40  Aligned_cols=76  Identities=36%  Similarity=0.515  Sum_probs=64.2

Q ss_pred             EEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCce
Q psy8436         224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSS  303 (306)
Q Consensus       224 v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~  303 (306)
                      +++.+.. ..+|||++.++.+..   .|++|..|.++|||+++| |++||+|++|||+++.+++++++..+|+..+ ..+
T Consensus         4 ~~v~~~~-~~~lG~~l~~~~~~~---~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v   77 (87)
T 2pa1_A            4 LTVDVAG-PAPWGFRITGGRDFH---TPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPL   77 (87)
T ss_dssp             EEEEECS-SSCCSEEEEEEGGGT---EEEEEEEECSSSHHHHTT-CCTTCEEEEETTEESTTCCHHHHHHHHHTCC-SSE
T ss_pred             EEEEECC-CCccCEEEecccCCC---CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeE
Confidence            3444433 368999999887642   589999999999999998 9999999999999999999999999999987 665


Q ss_pred             ec
Q psy8436         304 KL  305 (306)
Q Consensus       304 ~l  305 (306)
                      .|
T Consensus        78 ~l   79 (87)
T 2pa1_A           78 RL   79 (87)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.53  E-value=1.5e-14  Score=104.19  Aligned_cols=78  Identities=23%  Similarity=0.350  Sum_probs=67.2

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      .+++|.|.|.+  .+|||++.+..+.    .|++|..|.++|||+++| |++||+|++|||+++.+++++++..+|+.. 
T Consensus         3 ~pr~v~l~k~~--~~~G~~l~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-   74 (91)
T 2vsp_A            3 KPKLCRLAKGE--NGYGFHLNAIRGL----PGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSS-   74 (91)
T ss_dssp             CEEEEEEECBT--TBTSCCCBCCTTC----SCCBC-CCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHTTS-
T ss_pred             CcEEEEEEeCC--CcccEEEEeccCC----CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            46789999986  4899999876543    589999999999999999 999999999999999999999999999987 


Q ss_pred             CCceec
Q psy8436         300 PQSSKL  305 (306)
Q Consensus       300 ~~~~~l  305 (306)
                      +..+.|
T Consensus        75 g~~v~l   80 (91)
T 2vsp_A           75 GKNVTL   80 (91)
T ss_dssp             CSEEEE
T ss_pred             CCEEEE
Confidence            666554

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.53  E-value=2.3e-14  Score=108.54  Aligned_cols=78  Identities=22%  Similarity=0.430  Sum_probs=68.0

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhc-CCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAEN-EKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~-G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      ...++|.|.|... .+|||++.++.+..   .|++|..|.++|||+++ |+|++||+|++|||+++.+++|.+++.+|+.
T Consensus        14 ~~~~~v~l~k~~~-~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~   89 (119)
T 2cs5_A           14 DNLVLIRMKPDEN-GRFGFNVKGGYDQK---MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKA   89 (119)
T ss_dssp             SCCEEEEECCCSS-SCCSEEEEEEGGGT---EEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHH
T ss_pred             CCeEEEEEEeCCC-CCcCEEEecccCCC---CCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            4567899998763 67999999887642   58999999999999999 4499999999999999999999999999998


Q ss_pred             cCC
Q psy8436         298 IFP  300 (306)
Q Consensus       298 ~~~  300 (306)
                      .+.
T Consensus        90 ~~~   92 (119)
T 2cs5_A           90 SCE   92 (119)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            754

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.53  E-value=4.2e-14  Score=106.78  Aligned_cols=83  Identities=29%  Similarity=0.609  Sum_probs=70.1

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCC---CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPK---GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMF  295 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~---~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~L  295 (306)
                      .+.+.|.|.|.+. .+|||+|.++.+.+.   +..|++|..|.++|+|+ +| |++||+|++|||+++.+++|.+++.+|
T Consensus        13 ~~~~~v~l~k~~~-~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~g-L~~GD~I~~Vng~~v~~~~~~~~~~~l   89 (117)
T 2csj_A           13 WEQYTVTLQKDSK-RGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQL   89 (117)
T ss_dssp             EEEEEEEEECCSS-STTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHH
T ss_pred             ceEEEEEEEECCC-CccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-cc-CCCCCEEEEECCEECCCcCHHHHHHHH
Confidence            5678899998863 789999999887543   34689999999999996 55 999999999999999999999999999


Q ss_pred             hhcCCCceec
Q psy8436         296 KDIFPQSSKL  305 (306)
Q Consensus       296 k~~~~~~~~l  305 (306)
                      ++. +..+.|
T Consensus        90 ~~~-~~~v~l   98 (117)
T 2csj_A           90 RKS-GKIAAI   98 (117)
T ss_dssp             HHS-CSEEEE
T ss_pred             hcC-CCeEEE
Confidence            984 455544

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=99.53  E-value=2e-14  Score=122.86  Aligned_cols=87  Identities=36%  Similarity=0.528  Sum_probs=73.2

Q ss_pred             CCCCccceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy8436         214 PKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIA  293 (306)
Q Consensus       214 ~~~~~~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~  293 (306)
                      |.......+.|.|.|..+ .+|||+|.|+.+..   .|+||..|.++|||+++++|++||+|++|||+++.+++|.+++.
T Consensus        71 p~~~~~~~r~V~L~k~~~-~glGf~I~gg~d~~---~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~  146 (263)
T 1z87_A           71 PEALLLQRRRVTVRKADA-GGLGISIKGGRENK---MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQ  146 (263)
T ss_dssp             CCTTSCSSEEECCCTTTT-CCCCCEEEEETTTT---EEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHH
T ss_pred             CCcCCCccEEEEEEeCCC-CCEeEEEeeccCCC---CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHH
Confidence            334456788999999864 78999999987642   68999999999999996559999999999999999999999999


Q ss_pred             HHhhcCCCceec
Q psy8436         294 MFKDIFPQSSKL  305 (306)
Q Consensus       294 ~Lk~~~~~~~~l  305 (306)
                      +|++.. +.+.|
T Consensus       147 ~l~~~g-~~V~L  157 (263)
T 1z87_A          147 ALKKTG-KEVVL  157 (263)
T ss_dssp             HHHHCC-SCCCE
T ss_pred             HHhcCC-CeEEE
Confidence            999974 44443

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.53  E-value=1e-13  Score=103.59  Aligned_cols=79  Identities=28%  Similarity=0.516  Sum_probs=68.3

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.|.|.+..  .+|||.+.++.+     .|++|..|.++++|+++|+|++||+|++|||+++.++++.+++.+|+..
T Consensus        14 ~~~~~v~l~~~~--~~lG~~l~~~~~-----~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~   86 (111)
T 2dlu_A           14 GHVEEVELINDG--SGLGFGIVGGKT-----SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNC   86 (111)
T ss_dssp             SEEEEEEEECCS--SCCCEEEECCSS-----SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHH
T ss_pred             CceEEEEEEeCC--CccCEEEeccCC-----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            356788998874  689999998765     5899999999999999999999999999999999999999999999875


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                       +..+.|
T Consensus        87 -g~~v~l   92 (111)
T 2dlu_A           87 -GNSVRM   92 (111)
T ss_dssp             -CSEEEE
T ss_pred             -CCeEEE
Confidence             344443

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.53  E-value=1e-13  Score=101.19  Aligned_cols=79  Identities=25%  Similarity=0.459  Sum_probs=68.0

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      ..+.+.+.+..  .+|||.+.++.+.    .|++|..|.++|||+++| |++||+|++|||+++.+++++++..+|+..+
T Consensus         9 ~~~~~~l~~~~--~g~G~~~~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   81 (98)
T 2jxo_A            9 RPRLCTMKKGP--SGYGFNLHSDKSK----PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG   81 (98)
T ss_dssp             CCEEEEEECTT--TCCCEEEECCCSS----SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred             CcEEEEEEeCC--CcccEEEEecCCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            34678888875  6899999887643    489999999999999999 9999999999999999999999999999986


Q ss_pred             CCceec
Q psy8436         300 PQSSKL  305 (306)
Q Consensus       300 ~~~~~l  305 (306)
                      +..+.|
T Consensus        82 ~~~~~l   87 (98)
T 2jxo_A           82 DETKLL   87 (98)
T ss_dssp             TEEEEE
T ss_pred             CcEEEE
Confidence            554433

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=99.53  E-value=8.4e-14  Score=100.37  Aligned_cols=83  Identities=22%  Similarity=0.413  Sum_probs=70.3

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      ++++...+..+....|||.+.        .|++|..|.++|||+++|+|+.||+|++|||+++.++++.++..+|+.++.
T Consensus         2 ~~~~v~~~~~~~~~~~g~~~~--------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   73 (92)
T 3cyy_A            2 KPTKVTLVKSAKNEEYGLRLA--------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKG   73 (92)
T ss_dssp             CCEEEEEECSSTTSCCCEEEE--------EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTT
T ss_pred             CcEEEEEEeCCCCCCCCEEEe--------CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            445555555556679999987        469999999999999999999999999999999999999999999998878


Q ss_pred             eEEEEEEeCCC
Q psy8436          83 HVEIVICRNPD   93 (306)
Q Consensus        83 ~v~L~v~r~~~   93 (306)
                      .+.|+|.|...
T Consensus        74 ~v~l~v~r~g~   84 (92)
T 3cyy_A           74 KLKMVVQRDER   84 (92)
T ss_dssp             EEEEEEEC---
T ss_pred             cEEEEEEeCCc
Confidence            99999998654

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=99.52  E-value=6.1e-14  Score=104.10  Aligned_cols=76  Identities=29%  Similarity=0.395  Sum_probs=63.1

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .+.++|.|.|++  .+|||+|.++.      .|.+|..|.+  +|.. ++|++||+|++|||+++.+++|.|++++|++.
T Consensus        11 ~~~~~V~L~Kg~--~G~GFsI~~~~------~g~~V~~I~~--~~~~-aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~   79 (113)
T 3soe_A           11 GLLVTIPLIKGP--KGFGFAIADSP------TGQKVKMILD--SQWC-QGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQF   79 (113)
T ss_dssp             CEEEEEEEECBT--TBSSEEEEEET------TEEEEEEESC--GGGS-TTCCTTCEEEEETTEECTTSCHHHHHHHHHHS
T ss_pred             CCEEEEEEEECC--CcccEEEeCCC------CCcEEEEecC--hHHh-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            567899999985  69999997654      3788999988  4554 45999999999999999999999999999998


Q ss_pred             CC-Cceec
Q psy8436         299 FP-QSSKL  305 (306)
Q Consensus       299 ~~-~~~~l  305 (306)
                      +. ..+.|
T Consensus        80 ~~G~~v~L   87 (113)
T 3soe_A           80 PVGADVPL   87 (113)
T ss_dssp             CTTCEEEE
T ss_pred             CCCCEEEE
Confidence            74 44444

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.52  E-value=3.7e-14  Score=101.62  Aligned_cols=77  Identities=23%  Similarity=0.388  Sum_probs=64.6

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      ..++|++...   .+|||++.++.+..   .|++|..|.+++||+++| |++||+|++|||+++.++++.+++.++++. 
T Consensus         3 ~~~~v~~~~~---~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~-   74 (89)
T 2q3g_A            3 DSFKVVLEGP---APWGFRLQGGKDFN---VPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRAC-   74 (89)
T ss_dssp             EEEEEEEESS---SCCCEEEEEEGGGT---EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHTC-
T ss_pred             cEEEEEEcCC---CcccEEEECcCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC-
Confidence            4556777643   68999999877642   589999999999999999 999999999999999999999999999876 


Q ss_pred             CCcee
Q psy8436         300 PQSSK  304 (306)
Q Consensus       300 ~~~~~  304 (306)
                      +..+.
T Consensus        75 g~~v~   79 (89)
T 2q3g_A           75 GERLS   79 (89)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            44443

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.52  E-value=7.5e-14  Score=101.50  Aligned_cols=81  Identities=21%  Similarity=0.380  Sum_probs=67.7

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      .++.|.|.|..  .+|||++.+..+.. +..|++|..|.++|||+++| |++||+|++|||+++.++++++++.+|+.. 
T Consensus         3 ~~r~v~l~k~~--~~~G~~l~~~~~~~-~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-   77 (96)
T 2v90_A            3 KPRCLHLEKGP--QGFGFLLREEKGLD-GRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQ-   77 (96)
T ss_dssp             CCEEEEEECBT--TBSCEEEEEEECTT-SCEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHTT-
T ss_pred             CCEEEEEEeCC--CcccEEEEeccCCC-CCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            45789999985  58999998743221 12589999999999999999 999999999999999999999999999985 


Q ss_pred             CCceec
Q psy8436         300 PQSSKL  305 (306)
Q Consensus       300 ~~~~~l  305 (306)
                      +..+.|
T Consensus        78 g~~v~l   83 (96)
T 2v90_A           78 GSCVSL   83 (96)
T ss_dssp             TTEEEE
T ss_pred             CCEEEE
Confidence            555544

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.52  E-value=2.1e-14  Score=105.29  Aligned_cols=81  Identities=16%  Similarity=0.329  Sum_probs=71.3

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      +...+.|.+. ..+|||.+.+.      .+++|..|.++|||+++| |+.||+|++|||+++.++++.++..+++..++.
T Consensus        15 ~~~~v~l~~~-~~g~G~~~~~~------~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~   86 (100)
T 1whd_A           15 EKLQITIRRG-KDGFGFTICCD------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSE   86 (100)
T ss_dssp             EEEEEEEECC-SSSSSCBCCCS------SSCBCCBCCTTSHHHHHT-CCSSCEEEEETTEECTTCCHHHHHHHHHHCSSE
T ss_pred             ceEEEEEECC-CCeeeEEEeCC------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4456778774 46899999754      469999999999999999 999999999999999999999999999988888


Q ss_pred             EEEEEEeCC
Q psy8436          84 VEIVICRNP   92 (306)
Q Consensus        84 v~L~v~r~~   92 (306)
                      |.|+|.|..
T Consensus        87 v~l~v~R~~   95 (100)
T 1whd_A           87 IILLVWRVS   95 (100)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEECC
Confidence            999999864

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.51  E-value=1.5e-13  Score=104.76  Aligned_cols=82  Identities=18%  Similarity=0.372  Sum_probs=70.2

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCC
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDS   82 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~   82 (306)
                      ++.+.+.+  +.+|||.+.++..    .|++|..|.++|||+++| |+.||+|++|||+++.+++++++..+|+.  .+.
T Consensus        30 ~~~~~~~~--~~~lG~~l~~~~~----~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~  102 (124)
T 3tsv_A           30 MKLVKFRK--GDSVGLRLAGGND----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGE  102 (124)
T ss_dssp             CEEEEEEC--SSCCCEEEEECTT----SCEEEEEECTTCHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTC
T ss_pred             eEEEEcCC--CCceeEEEecCCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCC
Confidence            44444444  5799999998654    479999999999999999 99999999999999999999999998884  678


Q ss_pred             eEEEEEEeCCC
Q psy8436          83 HVEIVICRNPD   93 (306)
Q Consensus        83 ~v~L~v~r~~~   93 (306)
                      .+.|+|.|...
T Consensus       103 ~v~l~v~R~~~  113 (124)
T 3tsv_A          103 EVTILAQKKKD  113 (124)
T ss_dssp             EEEEEEEECHH
T ss_pred             EEEEEEEECCc
Confidence            89999998754

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.51  E-value=3.1e-13  Score=100.81  Aligned_cols=85  Identities=29%  Similarity=0.552  Sum_probs=71.1

Q ss_pred             CccceEEEEEEeCCCCCcccEEEEcCCCCCC---CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy8436         217 LSLSMFTVTFQKGPGQKSLGFSIVGGRDSPK---GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIA  293 (306)
Q Consensus       217 ~~~~~~~v~l~k~~~~~~lG~~l~gg~~~~~---~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~  293 (306)
                      ...+.+.+.+.+..  .+|||++.++.+...   ...|++|..|.+++||+++| |++||+|++|||+++.++++.+++.
T Consensus        12 ~~~~~~~~~l~~~~--~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~   88 (110)
T 1x5q_A           12 IEEEELTLTILRQT--GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVE   88 (110)
T ss_dssp             CCCEEEEEEEECSS--SSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             CCcceEEEEEecCC--CeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHH
Confidence            34566788888874  789999998876421   24689999999999999999 9999999999999999999999999


Q ss_pred             HHhhcCCCceec
Q psy8436         294 MFKDIFPQSSKL  305 (306)
Q Consensus       294 ~Lk~~~~~~~~l  305 (306)
                      .++. ++..+.|
T Consensus        89 ~~~~-~g~~v~l   99 (110)
T 1x5q_A           89 ALRG-AGTAVQM   99 (110)
T ss_dssp             HHHS-CCSEEEE
T ss_pred             HhhC-CCCeEEE
Confidence            8887 5565554

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.51  E-value=5e-14  Score=106.44  Aligned_cols=80  Identities=31%  Similarity=0.449  Sum_probs=66.4

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC-
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF-  299 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~-  299 (306)
                      .+.+.+.+.   .+|||+|.|+.+...  .+++|..|.++|||+++|+|++||+|++|||+++.+++|++++.+|++.. 
T Consensus        19 ~~~~~~~~~---~glG~~i~gg~~~~~--~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~   93 (118)
T 1v6b_A           19 VRLLRIKKE---GSLDLALEGGVDSPV--GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWN   93 (118)
T ss_dssp             EEEEEEESC---SCCCCEEEEBTTSSS--CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHH
T ss_pred             EEEEEECCC---CccCEEEEcccCCCC--CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhh
Confidence            455666665   479999999887643  35999999999999999669999999999999999999999999998763 


Q ss_pred             --CCceec
Q psy8436         300 --PQSSKL  305 (306)
Q Consensus       300 --~~~~~l  305 (306)
                        +..+.|
T Consensus        94 ~~g~~v~l  101 (118)
T 1v6b_A           94 QGGDWIDL  101 (118)
T ss_dssp             HTCSEEEE
T ss_pred             cCCCeEEE
Confidence              455544

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.51  E-value=2.5e-13  Score=101.78  Aligned_cols=79  Identities=23%  Similarity=0.409  Sum_probs=67.5

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ..++.|.|.|... .+|||.+.+..      .|++|..|.++|||+++|.|++||+|++|||+++.++++++++.+|+..
T Consensus        24 ~~~~~v~l~k~~~-~~lG~~i~~~~------~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~   96 (113)
T 1va8_A           24 ETVKIVRIEKARD-IPLGATVRNEM------DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDM   96 (113)
T ss_dssp             EECEEEEEEECTT-CCCCEEEEECS------SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             CceEEEEEEeCCC-CceeEEEEeCC------CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3567899999963 58999998763      5899999999999999994499999999999999999999999999876


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      +. .+.|
T Consensus        97 ~~-~v~l  102 (113)
T 1va8_A           97 HG-TLTF  102 (113)
T ss_dssp             CE-EEEE
T ss_pred             CC-eEEE
Confidence            63 4443

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.51  E-value=2.1e-13  Score=103.43  Aligned_cols=85  Identities=29%  Similarity=0.540  Sum_probs=71.6

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.+.+.+..  .+|||++.++.+...+..|++|..|.++|||+++|+|++||+|++|||+++.++++++++.+|+..
T Consensus        29 ~~~~~v~l~~~~--~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~  106 (121)
T 2kom_A           29 GKRLNIQLKKGT--EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRST  106 (121)
T ss_dssp             CEEEEEEEECCT--TCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHC
T ss_pred             CeEEEEEEEcCC--CcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcC
Confidence            456678887774  689999998776543446899999999999999988999999999999999999999999999987


Q ss_pred             C-CCceec
Q psy8436         299 F-PQSSKL  305 (306)
Q Consensus       299 ~-~~~~~l  305 (306)
                      + +..+.|
T Consensus       107 ~~g~~v~l  114 (121)
T 2kom_A          107 KMEGTVSL  114 (121)
T ss_dssp             CSSCEEEE
T ss_pred             CCCCEEEE
Confidence            5 555544

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=7.9e-14  Score=102.94  Aligned_cols=83  Identities=28%  Similarity=0.481  Sum_probs=70.0

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.|.|.+..  .+|||++.++.+.. +..+++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+|+. 
T Consensus        10 ~~~~~v~l~~~~--~g~G~~l~~~~~~~-~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-   85 (104)
T 2djt_A           10 SGHFSVELVRGY--AGFGLTLGGGRDVA-GDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRA-   85 (104)
T ss_dssp             CCCEEEEEECCS--SSCCEEEECCEETT-EECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHH-
T ss_pred             CceEEEEEEeCC--CCccEEEEeccCCC-CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-
Confidence            456789999885  68999999876531 12589999999999999998899999999999999999999999999988 


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      .+..+.|
T Consensus        86 ~g~~v~l   92 (104)
T 2djt_A           86 GGPQLHL   92 (104)
T ss_dssp             TCSEEEE
T ss_pred             CCCeEEE
Confidence            4555544

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.51  E-value=1.6e-13  Score=102.19  Aligned_cols=83  Identities=22%  Similarity=0.303  Sum_probs=68.4

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCC---------CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHH
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPK---------GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE  290 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~---------~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~e  290 (306)
                      ..++|.|.+.. ..+|||+|.++.+...         ...|++|..|.++++|+++| |++||+|++|||+++.+++|.+
T Consensus         7 ~~~~v~l~~~~-~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~   84 (109)
T 1q3o_A            7 KEKTVLLQKKD-SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQ   84 (109)
T ss_dssp             EEEEEEEECCT-TSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHH
T ss_pred             CcEEEEEEECC-CCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHH
Confidence            45788998765 4799999998876321         12379999999999999999 9999999999999999999999


Q ss_pred             HHHHHhhcCCCceec
Q psy8436         291 AIAMFKDIFPQSSKL  305 (306)
Q Consensus       291 av~~Lk~~~~~~~~l  305 (306)
                      ++.+|+.. +..+.|
T Consensus        85 ~~~~l~~~-~~~v~l   98 (109)
T 1q3o_A           85 VVNMIRQG-GNTLMV   98 (109)
T ss_dssp             HHHHHHHT-TTEEEE
T ss_pred             HHHHHHhC-CCEEEE
Confidence            99999976 444443

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.51  E-value=2.4e-13  Score=98.78  Aligned_cols=83  Identities=18%  Similarity=0.316  Sum_probs=70.8

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-   80 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-   80 (306)
                      +.+.+++.|.|.. .+|||+|.+..     .|++|..|.++  |+++| |+.||+|++|||+++.+++|++++.+|+.+ 
T Consensus         8 ~~~~~~v~l~~~~-~g~G~~i~~~~-----~Gv~V~~v~~~--a~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   78 (96)
T 1ujv_A            8 QAELMTLTIVKGA-QGFGFTIADSP-----TGQRVKQILDI--QGCPG-LCEGDLIVEINQQNVQNLSHTEVVDILKDCP   78 (96)
T ss_dssp             CCCCEEEEEECCS-SSSSEEEEEET-----TEEEEEEESCG--GGSTT-CCSSCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             CceEEEEEEEeCC-CceeEEEEcCC-----CCEEEEEEecc--cccCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            3567889999954 69999997543     36999999983  67788 999999999999999999999999999985 


Q ss_pred             -CCeEEEEEEeCCC
Q psy8436          81 -DSHVEIVICRNPD   93 (306)
Q Consensus        81 -~~~v~L~v~r~~~   93 (306)
                       +..|.|+|.|...
T Consensus        79 ~g~~v~l~v~R~g~   92 (96)
T 1ujv_A           79 IGSETSLIIHRGSG   92 (96)
T ss_dssp             TTSEEEEEEECCSS
T ss_pred             CCCEEEEEEEECCC
Confidence             6789999998753

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.51  E-value=1.4e-13  Score=96.68  Aligned_cols=78  Identities=22%  Similarity=0.440  Sum_probs=69.1

Q ss_pred             EEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEE
Q psy8436           6 KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVE   85 (306)
Q Consensus         6 ~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~   85 (306)
                      +...+.....+.|||.+.        .|++|..|.++|||+++|+|+.||+|++|||+++.++++.++..+++..++.+.
T Consensus         3 ~~~~~~~~~~~~~g~~~~--------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~   74 (81)
T 2rcz_A            3 KVTLVKSRKNEEYGLRLA--------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLK   74 (81)
T ss_dssp             EEEEECCSTTCCCCEEEE--------EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEE
T ss_pred             EEEEEECCCCCCCCEEEe--------CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEE
Confidence            445666777889999987        369999999999999999999999999999999999999999999998877899


Q ss_pred             EEEEeC
Q psy8436          86 IVICRN   91 (306)
Q Consensus        86 L~v~r~   91 (306)
                      |+|.|.
T Consensus        75 l~v~R~   80 (81)
T 2rcz_A           75 MVVQRD   80 (81)
T ss_dssp             EEEEC-
T ss_pred             EEEEeC
Confidence            999874

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.51  E-value=4.2e-14  Score=108.35  Aligned_cols=90  Identities=28%  Similarity=0.463  Sum_probs=78.7

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-   80 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-   80 (306)
                      +.+++.|.|.+....+|||++.+....   .+++|..|.++|||+++|.|+.||+|++|||+++.+++++++..+|+.. 
T Consensus         6 ~~~~~~v~l~~~~~~glG~~~~~~~~~---~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   82 (127)
T 1b8q_A            6 EPNVISVRLFKRKVGGLGFLVKERVSK---PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA   82 (127)
T ss_dssp             CCCSEEEEEECTTTSCCSCCEEECTTS---SCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCC
T ss_pred             CCceEEEEEEeCCCCcEeEEEEecCCC---CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            567889999997778999999987542   5799999999999999993399999999999999999999999999875 


Q ss_pred             CCeEEEEEEeCCCC
Q psy8436          81 DSHVEIVICRNPDD   94 (306)
Q Consensus        81 ~~~v~L~v~r~~~~   94 (306)
                      +..+.|+|.|....
T Consensus        83 g~~v~l~v~R~g~~   96 (127)
T 1b8q_A           83 SETHVVLILRGPEG   96 (127)
T ss_dssp             SSCEEEEEECCCCS
T ss_pred             CCeEEEEEEeCCce
Confidence            56899999997654

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.50  E-value=1.4e-13  Score=99.01  Aligned_cols=74  Identities=19%  Similarity=0.280  Sum_probs=64.2

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      .+++|.|.|+.  .+|||.+.+.       .|++|..|.++|||+++| |++||+|++|||+++.++++.+++.+|+...
T Consensus         3 ~~r~v~l~~~~--~g~G~~l~~~-------~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   72 (91)
T 2f5y_A            3 RYRQITIPRGK--DGFGFTICCD-------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCP   72 (91)
T ss_dssp             EEEEEEEECBT--TBTSEEEECS-------SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCS
T ss_pred             ceEEEEEEeCC--CCccEEEecC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            46789999885  6899999763       379999999999999999 9999999999999999999999999998754


Q ss_pred             CCcee
Q psy8436         300 PQSSK  304 (306)
Q Consensus       300 ~~~~~  304 (306)
                      . .+.
T Consensus        73 ~-~v~   76 (91)
T 2f5y_A           73 S-EII   76 (91)
T ss_dssp             S-EEE
T ss_pred             C-eEE
Confidence            3 443

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.50  E-value=6.9e-14  Score=99.28  Aligned_cols=77  Identities=30%  Similarity=0.469  Sum_probs=64.1

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP  300 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~  300 (306)
                      .+.|+|.+.   .+|||++.++.+..   .|++|..|.++|||+++| |++||+|++|||.++.++++.+++.+++....
T Consensus         2 ~~~v~l~~~---~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   74 (85)
T 1rgw_A            2 AYSVTLTGP---GPWGFRLQGGKDFN---MPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASY   74 (85)
T ss_dssp             EEEEEECCS---SCCCEEECCCGGGT---SCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSS
T ss_pred             cEEEEEeCC---CccCEEEEeccCCC---CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHcCCC
Confidence            356777432   67999999887643   589999999999999988 99999999999999999999999999987543


Q ss_pred             Cceec
Q psy8436         301 QSSKL  305 (306)
Q Consensus       301 ~~~~l  305 (306)
                       .+.|
T Consensus        75 -~v~l   78 (85)
T 1rgw_A           75 -NLSL   78 (85)
T ss_dssp             -CEEE
T ss_pred             -eEEE
Confidence             3443

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=6.9e-15  Score=112.60  Aligned_cols=88  Identities=19%  Similarity=0.379  Sum_probs=74.5

Q ss_pred             ccEEEEEEeCCCCceeEEEEecC-------------------CC-------CcCCCeEEEEeCCCChhcccCCCCCCCEE
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQD-------------------GG-------AHFSPYLISHIEPGGAIHRDGRFHVGDEL   57 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~-------------------~~-------~~~~gi~V~~V~~gs~A~~~G~L~~GD~I   57 (306)
                      ..|+|.|.|.. .+|||+|.+..                   .+       ....+++|..|.++|||+++| |++||+|
T Consensus         8 ~~r~v~l~r~~-~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I   85 (126)
T 2yuy_A            8 GPKTVTLKRTS-QGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDRI   85 (126)
T ss_dssp             SCCCEEEECCS-SSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHT-CCSSCCC
T ss_pred             CCEEEEEEECC-CCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcC-CCCCCEE
Confidence            45789999954 68999997520                   00       012469999999999999999 9999999


Q ss_pred             EEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCC
Q psy8436          58 IKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD   93 (306)
Q Consensus        58 l~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~   93 (306)
                      ++|||+++.++++++++.+|+.++..|.|+|.|...
T Consensus        86 ~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~  121 (126)
T 2yuy_A           86 IKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDS  121 (126)
T ss_dssp             CEETTEECSSCCHHHHHHHHHTCTTEEEEECCCCCC
T ss_pred             EEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence            999999999999999999999998999999988654

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=99.50  E-value=1.3e-13  Score=113.59  Aligned_cols=74  Identities=26%  Similarity=0.426  Sum_probs=66.9

Q ss_pred             CCceeEEEEecCCC------CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEE
Q psy8436          15 SNELGIYIERQDGG------AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVI   88 (306)
Q Consensus        15 ~~~lG~~i~gg~~~------~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v   88 (306)
                      +.+|||+|.|+.++      ....|++|..|.++|||++ | |+.||+|++|||+++.+++|.+++.+++.++..|.|+|
T Consensus         1 ~~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v   78 (195)
T 2qbw_A            1 SPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELII   78 (195)
T ss_dssp             CCCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEE
T ss_pred             CCcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            36899999998542      1236899999999999999 8 99999999999999999999999999999988999999


Q ss_pred             Ee
Q psy8436          89 CR   90 (306)
Q Consensus        89 ~r   90 (306)
                      .|
T Consensus        79 ~r   80 (195)
T 2qbw_A           79 VR   80 (195)
T ss_dssp             EE
T ss_pred             EE
Confidence            99

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.50  E-value=9.2e-15  Score=107.83  Aligned_cols=78  Identities=15%  Similarity=0.266  Sum_probs=69.6

Q ss_pred             CCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCC
Q psy8436          14 DSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD   93 (306)
Q Consensus        14 ~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~   93 (306)
                      ...+|||++.++.+..  .+++|..|.++|||+++| |++||+|++|||+++.++++.++..+|+..+..+.|+|.|...
T Consensus        13 ~~~~lG~~l~~g~~~~--~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g~   89 (103)
T 1v5l_A           13 GPAPWGFRLSGGIDFN--QPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET   89 (103)
T ss_dssp             SSSCCSBCCEEETTTT--EEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCTT
T ss_pred             CCCCcCEEEeccccCC--CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEECCe
Confidence            4568999999886432  479999999999999999 9999999999999999999999999999988899999998765


Q ss_pred             C
Q psy8436          94 D   94 (306)
Q Consensus        94 ~   94 (306)
                      .
T Consensus        90 ~   90 (103)
T 1v5l_A           90 R   90 (103)
T ss_dssp             T
T ss_pred             E
Confidence            3

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=99.50  E-value=1.6e-13  Score=105.25  Aligned_cols=86  Identities=14%  Similarity=0.265  Sum_probs=74.4

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      +...|+|.|.+.. .+|||.+.++...   .|++|..|.++|||+++| |+.||+|++|||+++.++++.++..+|+...
T Consensus         7 ~~~~r~v~l~~~~-~g~G~~l~~~~~~---~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   81 (128)
T 2kjd_A            7 MLRPRLCTMKKGP-SGYGFNLHSDKSK---PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG   81 (128)
T ss_dssp             TCCCEEEEEECCS-SSCCEEEEECSSS---CSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTC
T ss_pred             CCCcEEEEEecCC-CcccEEEEecCCC---CCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            3457889999954 6899999987643   489999999999999999 9999999999999999999999999999874


Q ss_pred             C-eEEEEEEeCC
Q psy8436          82 S-HVEIVICRNP   92 (306)
Q Consensus        82 ~-~v~L~v~r~~   92 (306)
                      . .+.|+|.|..
T Consensus        82 ~~~~~l~v~R~g   93 (128)
T 2kjd_A           82 DETKLLVVDRET   93 (128)
T ss_dssp             SEEEEEEECHHH
T ss_pred             CCEEEEEEEeCC
Confidence            4 5678888754

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.50  E-value=2.6e-13  Score=98.81  Aligned_cols=82  Identities=30%  Similarity=0.571  Sum_probs=68.4

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCC---CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPK---GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK  296 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~---~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk  296 (306)
                      +.+.+.+.+..  .+|||++.++.+.+.   ...|++|..|.++|||+++| |++||+|++|||+++.++++.+++..++
T Consensus         3 ~~~~v~~~~~~--~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~   79 (97)
T 2w4f_A            3 EELTLTILRQT--GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALR   79 (97)
T ss_dssp             CEEEEEEECBT--TBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             eEEEEEEEeCC--CceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHh
Confidence            45678888873  689999998876432   23689999999999999999 9999999999999999999999988887


Q ss_pred             hcCCCceec
Q psy8436         297 DIFPQSSKL  305 (306)
Q Consensus       297 ~~~~~~~~l  305 (306)
                      . ++..+.|
T Consensus        80 ~-~g~~v~l   87 (97)
T 2w4f_A           80 G-AGTAVQM   87 (97)
T ss_dssp             T-SCSEEEE
T ss_pred             C-CCCeEEE
Confidence            7 5555554

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.49  E-value=8e-14  Score=103.19  Aligned_cols=78  Identities=28%  Similarity=0.418  Sum_probs=66.0

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      +.++|+|.|..+ .+|||++.+..      .|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++...
T Consensus         2 ~~~~v~L~k~~~-~glG~~i~~~~------~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~   74 (106)
T 2la8_A            2 EKFNVDLMKKAG-KELGLSLSPNE------IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGAN   74 (106)
T ss_dssp             EEEEEEECCBSS-STTCCEEEECS------SSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCB
T ss_pred             eEEEEEEEeCCC-CccCEEEEeCC------CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCC
Confidence            356788886653 78999998722      58999999999999999999999999999999999999999999998754


Q ss_pred             CCceec
Q psy8436         300 PQSSKL  305 (306)
Q Consensus       300 ~~~~~l  305 (306)
                       +.+.|
T Consensus        75 -~~v~l   79 (106)
T 2la8_A           75 -GKVSM   79 (106)
T ss_dssp             -SCEEE
T ss_pred             -CeEEE
Confidence             34543

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.49  E-value=5.6e-14  Score=107.77  Aligned_cols=86  Identities=23%  Similarity=0.310  Sum_probs=70.3

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCC---C---CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSP---K---GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAI  292 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~---~---~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav  292 (306)
                      ..++.|.|.|.+...+|||++.++.+..   .   ...|+||..|.++|||+++|.|++||+|++|||+++.+++|++++
T Consensus        28 ~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~  107 (128)
T 1nf3_C           28 ETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVT  107 (128)
T ss_dssp             TTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHH
T ss_pred             CccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            4567899998853478999998875421   0   013799999999999999998999999999999999999999999


Q ss_pred             HHHhhcCCCceec
Q psy8436         293 AMFKDIFPQSSKL  305 (306)
Q Consensus       293 ~~Lk~~~~~~~~l  305 (306)
                      .+|+.... .+.|
T Consensus       108 ~~l~~~~~-~v~l  119 (128)
T 1nf3_C          108 DMMIANSR-NLII  119 (128)
T ss_dssp             HHHHHTTT-SEEE
T ss_pred             HHHHcCCC-eEEE
Confidence            99997654 3544

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.49  E-value=1.8e-13  Score=104.02  Aligned_cols=87  Identities=23%  Similarity=0.315  Sum_probs=72.4

Q ss_pred             ccceEEEEEEeCCCCCcccEEEEcCCCCC-CCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436         218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSP-KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK  296 (306)
Q Consensus       218 ~~~~~~v~l~k~~~~~~lG~~l~gg~~~~-~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk  296 (306)
                      ..+.++|.|.|.. ..+|||+|.++.... ....+++|..|.+++||+++|.|++||+|++|||+++.++++++++.+|+
T Consensus        13 ~~~~~~v~l~k~~-~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~   91 (122)
T 1v5q_A           13 HTETTEVVLTADP-VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLR   91 (122)
T ss_dssp             CEEEEEEEECCCS-SSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHH
T ss_pred             cceeEEEEEEeCC-CCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3567889998885 378999999873211 12357999999999999999889999999999999999999999999999


Q ss_pred             hcC-CCceec
Q psy8436         297 DIF-PQSSKL  305 (306)
Q Consensus       297 ~~~-~~~~~l  305 (306)
                      ..+ ...+.|
T Consensus        92 ~~~~g~~v~l  101 (122)
T 1v5q_A           92 DSSITSKVTL  101 (122)
T ss_dssp             HHTTTTCEEE
T ss_pred             hCCCCCeEEE
Confidence            987 556654

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.49  E-value=1.2e-13  Score=99.33  Aligned_cols=77  Identities=30%  Similarity=0.372  Sum_probs=65.7

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP  300 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~  300 (306)
                      .+.|.+...   .+|||++.++.+..   .|++|..|.++|||+++| |++||+|++|||+++.++++.++..+|+. ++
T Consensus         4 ~~~v~~~~~---~~~G~~l~~~~~~~---~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g   75 (91)
T 2pkt_A            4 TQQIDLQGP---GPWGFRLVGGKDFE---QPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKG-CT   75 (91)
T ss_dssp             EEEEEEESS---SCCSEEEEEEGGGT---EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHT-CS
T ss_pred             cEEEEECCC---CCCCEEEEccCCCC---CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc-CC
Confidence            456777644   57999999876542   589999999999999999 99999999999999999999999999998 66


Q ss_pred             Cceec
Q psy8436         301 QSSKL  305 (306)
Q Consensus       301 ~~~~l  305 (306)
                      ..+.|
T Consensus        76 ~~v~l   80 (91)
T 2pkt_A           76 DNLTL   80 (91)
T ss_dssp             SEEEE
T ss_pred             CeEEE
Confidence            66554

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.48  E-value=1.2e-13  Score=102.52  Aligned_cols=76  Identities=22%  Similarity=0.260  Sum_probs=66.4

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      ..+.|.|.|++  .+|||.+.+.       .+++|..|.+++||+++| |++||+|++|||.++.++++++++++|+..+
T Consensus        23 ~~r~v~l~k~~--~~~G~~l~~~-------~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~   92 (109)
T 2vsv_A           23 MPRSIRFTAEE--GDLGFTLRGN-------APVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFG   92 (109)
T ss_dssp             SCEEEEECCGG--GCCCEEEESS-------SSCEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred             CCEEEEEEeCC--CceeEEEeCC-------CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            45789999874  6899999653       378999999999999998 9999999999999999999999999999887


Q ss_pred             CCceec
Q psy8436         300 PQSSKL  305 (306)
Q Consensus       300 ~~~~~l  305 (306)
                      +..+.|
T Consensus        93 ~~~v~l   98 (109)
T 2vsv_A           93 EDEIEM   98 (109)
T ss_dssp             TSCEEE
T ss_pred             CCeEEE
Confidence            765554

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=9.2e-14  Score=99.99  Aligned_cols=76  Identities=22%  Similarity=0.312  Sum_probs=64.2

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP  300 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~  300 (306)
                      ++.|.|.|..+ .+|||++.+..      .+++|..|.+++||+++|.|++||+|++|||+++ +.++++++.+|++. .
T Consensus         7 ~r~v~l~k~~~-~~lG~~i~~~~------~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~-~   77 (91)
T 2e7k_A            7 GRMVGIRKTAG-EHLGVTFRVEG------GELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNA-S   77 (91)
T ss_dssp             SCBCCBCCCTT-CCCCEEEEESS------SSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTC-C
T ss_pred             cEEEEEEECCC-CcEeEEEEecC------CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcC-C
Confidence            45677877653 78999998732      5899999999999999988999999999999999 99999999999985 4


Q ss_pred             Cceec
Q psy8436         301 QSSKL  305 (306)
Q Consensus       301 ~~~~l  305 (306)
                      +.+.|
T Consensus        78 ~~v~l   82 (91)
T 2e7k_A           78 GSVIL   82 (91)
T ss_dssp             SSBCE
T ss_pred             CeEEE
Confidence            44443

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.48  E-value=2.3e-13  Score=113.06  Aligned_cols=85  Identities=20%  Similarity=0.300  Sum_probs=74.4

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV   84 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v   84 (306)
                      ..++.+.+....+|||++.+..     .|++|..|.++|+|+++|+|+.||+|++|||+++.+++|++++.+++.++..+
T Consensus       114 ~~~v~l~~~~~~~lG~~~~~~~-----~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v  188 (206)
T 3r0h_A          114 KFNVDLMKKAGKELGLSLSPNE-----IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKV  188 (206)
T ss_dssp             EEEEEEECCTTCCCCEEEEECS-----SCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred             EEEEEEecCCCCccCeEEEcCC-----ceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            3456666766679999998543     47999999999999999999999999999999999999999999999998899


Q ss_pred             EEEEEeCCCC
Q psy8436          85 EIVICRNPDD   94 (306)
Q Consensus        85 ~L~v~r~~~~   94 (306)
                      .|+|.|....
T Consensus       189 ~L~V~R~~~~  198 (206)
T 3r0h_A          189 SMEVTRPKPT  198 (206)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEeCCCC
Confidence            9999996543

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.48  E-value=1.7e-13  Score=100.77  Aligned_cols=79  Identities=25%  Similarity=0.402  Sum_probs=67.4

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...++|.|.|..  .+|||++.++.+.    .|++|..|.++|||+++| |++||+|++|||+++.++++++++.+|++.
T Consensus         5 ~~~r~v~l~k~~--~g~G~~l~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   77 (102)
T 2d90_A            5 SSGRVVVIKKGS--NGYGFYLRAGPEQ----KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKG   77 (102)
T ss_dssp             SSSEEEEEECCS--SSSSCEEEECSSS----SSEEEECCCTTSTTTTTT-CCTTCEEEEESSCBCTTSCHHHHHHHHHHS
T ss_pred             CCCEEEEEeeCC--CCccEEEEeecCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            345789999985  6899999886542    589999999999999999 999999999999999999999999999874


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                       +..+.|
T Consensus        78 -g~~v~l   83 (102)
T 2d90_A           78 -GDQTTL   83 (102)
T ss_dssp             -TTEEEE
T ss_pred             -CCEEEE
Confidence             444443

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.48  E-value=3.4e-13  Score=101.14  Aligned_cols=78  Identities=28%  Similarity=0.428  Sum_probs=67.6

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.|.|.+... .+|||++.++.+..   .+++|..|.++|||+++|+|++||+|++|||.++.+.++++++.+|+..
T Consensus        23 ~~~~~V~l~~~~~-~~lG~~l~~~~~~~---~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~   98 (114)
T 2gzv_A           23 MVPGKVTLQKDAQ-NLIGISIGGGAQYC---PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV   98 (114)
T ss_dssp             CCCEEEEEECCTT-SCCSEEEEECCC-----CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             CCCEEEEEEECCC-CcEeEEEEeCCCCC---CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3457899998863 67999999877542   4799999999999999999999999999999999999999999999976


Q ss_pred             CC
Q psy8436         299 FP  300 (306)
Q Consensus       299 ~~  300 (306)
                      ++
T Consensus        99 ~~  100 (114)
T 2gzv_A           99 KG  100 (114)
T ss_dssp             CS
T ss_pred             CC
Confidence            64

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.48  E-value=2.8e-13  Score=111.46  Aligned_cols=88  Identities=27%  Similarity=0.478  Sum_probs=75.6

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCCc---CCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGAH---FSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~~---~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      ..++.+.+.. .+|||++.++.....   ..|++|..|.++|||+++|+|++||+|++|||+++.+++|++++.+|+.++
T Consensus       101 ~~~v~l~~~~-~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~  179 (196)
T 3gsl_A          101 VMEIKLIKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTY  179 (196)
T ss_dssp             EEEEEEEEBT-TBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCC
T ss_pred             cEEEEEecCC-CCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCC
Confidence            4566777754 499999998754321   247999999999999999999999999999999999999999999999998


Q ss_pred             CeEEEEEEeCCC
Q psy8436          82 SHVEIVICRNPD   93 (306)
Q Consensus        82 ~~v~L~v~r~~~   93 (306)
                      ..+.|+|.|+..
T Consensus       180 ~~v~l~v~R~~~  191 (196)
T 3gsl_A          180 DVVYLKVAKPSN  191 (196)
T ss_dssp             EEEEEEEEEESC
T ss_pred             CeEEEEEeCCCC
Confidence            899999998654

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=1.6e-13  Score=99.32  Aligned_cols=79  Identities=33%  Similarity=0.367  Sum_probs=66.0

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.|+|.+.   .+|||++.++.+..   .+++|..|.+++||+++| |++||+|++|||+++.++++.+++.+++. 
T Consensus         7 ~~~~~v~l~~~---~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~-   78 (94)
T 2eeg_A            7 GMPHSVTLRGP---SPWGFRLVGGRDFS---APLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKG-   78 (94)
T ss_dssp             CCCEEEEECCS---SCCSCCEECCTTTT---SCCEECCCCSSSHHHHTT-CCTTCEEEEETTEETTTCCHHHHHHHHHT-
T ss_pred             CceEEEEEeCC---CccCEEEECccCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc-
Confidence            34567888433   57999999988753   589999999999999998 99999999999999999999999999987 


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      ....+.|
T Consensus        79 ~g~~v~l   85 (94)
T 2eeg_A           79 CHDHLTL   85 (94)
T ss_dssp             CCSCEEE
T ss_pred             CCCeEEE
Confidence            4444443

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.48  E-value=4.9e-13  Score=99.19  Aligned_cols=84  Identities=32%  Similarity=0.635  Sum_probs=68.9

Q ss_pred             ccceEEEEEEeCCCCCcccEEEEcCCCCCC---CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy8436         218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPK---GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM  294 (306)
Q Consensus       218 ~~~~~~v~l~k~~~~~~lG~~l~gg~~~~~---~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~  294 (306)
                      ..+.++|.|.|.+. .+|||++.++.+.+.   +..|++|..|.+++||+ +| |++||+|++|||+++.++++.+++..
T Consensus         5 ~~~~~~v~l~k~~~-~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-ag-l~~GD~I~~vng~~v~~~~~~~~~~~   81 (107)
T 2h2b_A            5 IWEQHTVTLHRAPG-FGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQ-LQENDRVAMVNGVSMDNVEHAFAVQQ   81 (107)
T ss_dssp             CEEEEEEEEECBTT-TBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TT-BCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             cceeEEEEEEeCCC-CccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hC-CCCCCEEEEECCEECCCccHHHHHHH
Confidence            35678999999863 789999998877432   24699999999999999 76 99999999999999999999998888


Q ss_pred             HhhcCCCceec
Q psy8436         295 FKDIFPQSSKL  305 (306)
Q Consensus       295 Lk~~~~~~~~l  305 (306)
                      +++ ++..+.|
T Consensus        82 ~~~-~g~~v~l   91 (107)
T 2h2b_A           82 LRK-SGKNAKI   91 (107)
T ss_dssp             HHT-CCSEEEE
T ss_pred             hhC-CCCEEEE
Confidence            874 3444443

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.47  E-value=3.7e-13  Score=99.14  Aligned_cols=84  Identities=31%  Similarity=0.533  Sum_probs=66.8

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCC------CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPK------GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIA  293 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~------~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~  293 (306)
                      .+++|.|.+... ..|||++.++.+...      ...|++|..|.++|||+++|.|++||+|++|||+++.++++.+++.
T Consensus         4 dp~~v~l~~~~~-~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~   82 (103)
T 2fcf_A            4 QPRRVELWREPS-KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVE   82 (103)
T ss_dssp             SCEEEEECCCC--CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             CCEEEEEEeCCC-CceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            456788888753 679999988665321      1248999999999999999889999999999999999999999999


Q ss_pred             HHhhcCCCceec
Q psy8436         294 MFKDIFPQSSKL  305 (306)
Q Consensus       294 ~Lk~~~~~~~~l  305 (306)
                      +|+..++ .+.|
T Consensus        83 ~l~~~~~-~v~l   93 (103)
T 2fcf_A           83 AIRKAGN-PVVF   93 (103)
T ss_dssp             HHHTCCS-SEEE
T ss_pred             HHHhCCC-cEEE
Confidence            9998754 5544

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.47  E-value=2.1e-13  Score=100.98  Aligned_cols=78  Identities=24%  Similarity=0.418  Sum_probs=66.9

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP  300 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~  300 (306)
                      ++.|.|.|.++ ..|||.+....+.    .|++|..|.++|||+++| |++||+|++|||+++.+++|.+++.+|++ .+
T Consensus         2 ~r~v~l~~~~~-~~~G~~l~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g   74 (106)
T 3ngh_A            2 PRESKLSKQEG-QNYGFFLRIEKDT----DGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRK-SG   74 (106)
T ss_dssp             CEEEEEECCTT-CCCCCEEECCTTC----CSCEEECCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHHH-TT
T ss_pred             CEEEEEEeCCC-CeeCEEEEEEeCC----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh-CC
Confidence            35788988874 6899999877653    589999999999999999 99999999999999999999999999985 44


Q ss_pred             Cceec
Q psy8436         301 QSSKL  305 (306)
Q Consensus       301 ~~~~l  305 (306)
                      ..+.|
T Consensus        75 ~~v~l   79 (106)
T 3ngh_A           75 NSVTL   79 (106)
T ss_dssp             TEEEE
T ss_pred             CEEEE
Confidence            45543

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.47  E-value=2e-13  Score=102.80  Aligned_cols=82  Identities=37%  Similarity=0.663  Sum_probs=69.7

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .+.+.|.|.+..  .+|||++.++.+...  .|++|..|.++++|+++|+|++||+|++|||+++.++++.+++.+|+..
T Consensus        16 ~~~~~v~l~~~~--~glG~~l~~~~~~~~--~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~   91 (116)
T 2dm8_A           16 GQEMIIEISKGR--SGLGLSIVGGKDTPL--NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQT   91 (116)
T ss_dssp             TSCEEEEEECCS--SCCCCCCBCCTTSSC--SSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTC
T ss_pred             CCEEEEEEEECC--CcccEEEeCCCCCCc--CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            345788888874  689999998776432  4899999999999999999999999999999999999999999999886


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      . ..+.|
T Consensus        92 ~-~~v~l   97 (116)
T 2dm8_A           92 P-QKVRL   97 (116)
T ss_dssp             C-SEEEE
T ss_pred             C-CeEEE
Confidence            6 54443

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.47  E-value=2.7e-13  Score=100.01  Aligned_cols=82  Identities=32%  Similarity=0.428  Sum_probs=66.5

Q ss_pred             EEEEEeCC--CCCcccEEEEcCCCCC---------CCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHH
Q psy8436         223 TVTFQKGP--GQKSLGFSIVGGRDSP---------KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEA  291 (306)
Q Consensus       223 ~v~l~k~~--~~~~lG~~l~gg~~~~---------~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~ea  291 (306)
                      .+++.+..  +..+|||++.|+.+..         ....|++|..|.++|||+++| |++||+|++|||+++.+++|+++
T Consensus         7 ~i~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~   85 (104)
T 3sfj_A            7 RVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQA   85 (104)
T ss_dssp             EEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHH
T ss_pred             EEEEEEccCCCCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHH
Confidence            45555432  2236999999877642         124689999999999999999 99999999999999999999999


Q ss_pred             HHHHhhcCCCceec
Q psy8436         292 IAMFKDIFPQSSKL  305 (306)
Q Consensus       292 v~~Lk~~~~~~~~l  305 (306)
                      +.+|++.++..+.|
T Consensus        86 ~~~l~~~~g~~v~l   99 (104)
T 3sfj_A           86 RKRLTKRSEEVVRL   99 (104)
T ss_dssp             HHHHTCTTCSEEEE
T ss_pred             HHHHHhCCCCEEEE
Confidence            99999877666654

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.47  E-value=4.8e-13  Score=96.98  Aligned_cols=79  Identities=37%  Similarity=0.620  Sum_probs=64.3

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCC---CC--CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDS---PK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMF  295 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~---~~--~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~L  295 (306)
                      .++|.+.+..   +|||+|.++.+.   +.  ...|++|..|.++|||++ | |++||+|++|||+++.++++.+++.++
T Consensus         4 ~~~v~l~~~~---~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~   78 (95)
T 1mfg_A            4 EIRVRVEKDP---ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLL   78 (95)
T ss_dssp             EEEEEEECSS---SCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCBHHHHHHHH
T ss_pred             EEEEEECCCC---CCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-C-CCCCCEEEEECCEEcCCCCHHHHHHHh
Confidence            3467777763   699999997742   21  246999999999999999 7 999999999999999999999999999


Q ss_pred             hhcCCCceec
Q psy8436         296 KDIFPQSSKL  305 (306)
Q Consensus       296 k~~~~~~~~l  305 (306)
                      +.. +..+.|
T Consensus        79 ~~~-~~~v~l   87 (95)
T 1mfg_A           79 KTF-QNTVEL   87 (95)
T ss_dssp             HHC-CSEEEE
T ss_pred             hcC-CCeEEE
Confidence            854 444443

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.47  E-value=2.5e-13  Score=98.71  Aligned_cols=79  Identities=29%  Similarity=0.430  Sum_probs=66.7

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+++.|.+... .+|||++.+..      .|++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++..
T Consensus         7 ~~~~~v~l~~~~~-~glG~~~~~~~------~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~   79 (96)
T 2qkv_A            7 LEKFNVDLMKKAG-KELGLSLSPNE------IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGA   79 (96)
T ss_dssp             CCCEEEEEECBTT-BCCCEEEEECS------SSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             CceEEEEEEeCCC-CCccEEEEeCC------CcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            4567888977653 68999998722      5899999999999999998999999999999999999999999999876


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      .. .+.|
T Consensus        80 ~~-~v~l   85 (96)
T 2qkv_A           80 NG-KVSM   85 (96)
T ss_dssp             SS-EEEE
T ss_pred             CC-cEEE
Confidence            53 4543

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.46  E-value=5.1e-13  Score=97.17  Aligned_cols=84  Identities=31%  Similarity=0.492  Sum_probs=68.0

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCC-CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPK-GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~-~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      .+.+++.+.+..  .+|||++.+..+... ...|++|..|.++++|+++|+|++||+|++|||+++.++++.+++.+|+.
T Consensus         3 ~~~~~v~l~~~~--~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   80 (97)
T 2iwn_A            3 SETFDVELTKNV--QGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH   80 (97)
T ss_dssp             EEEEEEEEECBT--TBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHT
T ss_pred             cEEEEEEEecCC--CCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            345678887663  689999998754221 13589999999999999998899999999999999999999999999987


Q ss_pred             cCCCceec
Q psy8436         298 IFPQSSKL  305 (306)
Q Consensus       298 ~~~~~~~l  305 (306)
                       .+..+.|
T Consensus        81 -~~~~v~l   87 (97)
T 2iwn_A           81 -TGQTVLL   87 (97)
T ss_dssp             -CCSEEEE
T ss_pred             -CCCeEEE
Confidence             5555544

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.46  E-value=4.6e-13  Score=101.81  Aligned_cols=84  Identities=31%  Similarity=0.533  Sum_probs=68.2

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCC------CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPK------GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIA  293 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~------~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~  293 (306)
                      ..+.+.+.+... ..|||++.++.+...      ...|++|..|.++|||+++|+|++||+|++|||+++.++++++++.
T Consensus        24 ~p~~v~l~k~~~-~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~  102 (123)
T 2iwq_A           24 QPRRVELWREPS-KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVE  102 (123)
T ss_dssp             CCEEEEECCCTT-SCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             CCEEEEEEecCC-CCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            346788888753 689999987654321      1258999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCceec
Q psy8436         294 MFKDIFPQSSKL  305 (306)
Q Consensus       294 ~Lk~~~~~~~~l  305 (306)
                      +|+..+. .+.|
T Consensus       103 ~l~~~~~-~v~l  113 (123)
T 2iwq_A          103 AIRKAGN-PVVF  113 (123)
T ss_dssp             HHHHCCS-SEEE
T ss_pred             HHHcCCC-eEEE
Confidence            9998754 5544

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=99.46  E-value=4e-13  Score=96.42  Aligned_cols=81  Identities=17%  Similarity=0.303  Sum_probs=68.5

Q ss_pred             EEEEEEeCCCC--ceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CC
Q psy8436           6 KVFRVVKDDSN--ELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KD   81 (306)
Q Consensus         6 ~~v~l~r~~~~--~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~   81 (306)
                      ..+.+.+.++.  +|||++....     .|++|..|.++|||+++| |+.||+|++|||+++.+.++.++..+|+.  .+
T Consensus         5 ~~~~~~~~~~~~~~lG~~~~~~~-----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g   78 (90)
T 2eaq_A            5 MRISINQTPGKSLDFGFTIKWDI-----PGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQET   78 (90)
T ss_dssp             EEEEEECCTTCSSCCSEEEEEET-----TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECCTTCHHHHHHHHHHHHHH
T ss_pred             eEEEEEecCCCCCcccEEEEecC-----CCEEEEEECCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHHHhcCCC
Confidence            45666666555  7999997432     479999999999999999 99999999999999987789999999985  47


Q ss_pred             CeEEEEEEeCC
Q psy8436          82 SHVEIVICRNP   92 (306)
Q Consensus        82 ~~v~L~v~r~~   92 (306)
                      ..+.|+|.|+.
T Consensus        79 ~~v~l~v~R~g   89 (90)
T 2eaq_A           79 GHLVMDVRRYG   89 (90)
T ss_dssp             TEEEEEEEEEC
T ss_pred             CEEEEEEEeCC
Confidence            88999998853

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.46  E-value=5e-13  Score=96.50  Aligned_cols=75  Identities=28%  Similarity=0.457  Sum_probs=64.3

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.|.|.|..  .+|||.+.+.       .|++|..|.+++||+++| |++||+|++|||+++.++++.+++.+++. 
T Consensus         7 ~~~r~v~l~~~~--~~~G~~l~~~-------~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-   75 (93)
T 2dls_A            7 GVQRCVIIQKDQ--HGFGFTVSGD-------RIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIKS-   75 (93)
T ss_dssp             CCEEEEEEECSS--SSCCEEEECS-------SSCEEEEECSSSTTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHTS-
T ss_pred             CCCEEEEEEeCC--CceeEEEeCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC-
Confidence            456789998885  6899999753       489999999999999999 99999999999999999999999998873 


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                       +..+.|
T Consensus        76 -g~~v~l   81 (93)
T 2dls_A           76 -GAYVAL   81 (93)
T ss_dssp             -SSEEEE
T ss_pred             -CCEEEE
Confidence             555544

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.46  E-value=7.9e-14  Score=98.54  Aligned_cols=74  Identities=19%  Similarity=0.397  Sum_probs=63.8

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP  300 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~  300 (306)
                      +++|.|.|+.  .+|||.+.+.       .|++|..|.+++||+++| |++||+|++|||+++.+++|++++.+|+... 
T Consensus         3 ~r~v~l~~~~--~g~G~~~~~~-------~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-   71 (83)
T 2kv8_A            3 VRSVEVARGR--AGYGFTLSGQ-------APCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCS-   71 (83)
T ss_dssp             EEEEEECCCS--SCCSCBCCCS-------SSCBCCBCCTTSTTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCS-
T ss_pred             cEEEEEEeCC--CcccEEEEcC-------CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-
Confidence            5689998885  6899998653       379999999999999999 9999999999999999999999999998764 


Q ss_pred             Cceec
Q psy8436         301 QSSKL  305 (306)
Q Consensus       301 ~~~~l  305 (306)
                      ..+.|
T Consensus        72 ~~v~l   76 (83)
T 2kv8_A           72 GVLHM   76 (83)
T ss_dssp             SCEEE
T ss_pred             CeEEE
Confidence            34443

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.45  E-value=4.1e-13  Score=101.61  Aligned_cols=79  Identities=37%  Similarity=0.649  Sum_probs=68.2

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.|.|.|..  .+|||++.++.+.    .|++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+++..
T Consensus        13 ~~~~~v~l~k~~--~glG~~l~~~~~~----~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   86 (119)
T 1tp5_A           13 REPRRIVIHRGS--TGLGFNIVGGEDG----EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA   86 (119)
T ss_dssp             CSCEEEEEECTT--SCCCEEEEECGGG----CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred             CccEEEEEEECC--CCccEEEecCCCC----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            457789999985  5799999987652    5899999999999999988999999999999999999999999988874


Q ss_pred             CCCcee
Q psy8436         299 FPQSSK  304 (306)
Q Consensus       299 ~~~~~~  304 (306)
                       +..+.
T Consensus        87 -~~~v~   91 (119)
T 1tp5_A           87 -GQTVT   91 (119)
T ss_dssp             -CSEEE
T ss_pred             -CCeEE
Confidence             34443

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.45  E-value=3.9e-13  Score=96.02  Aligned_cols=78  Identities=28%  Similarity=0.444  Sum_probs=63.4

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .+.++|.|.|+.  .+|||++.+..+.    .+++|..| +++||+ +| |++||+|++|||+++.+++|++++.+|++.
T Consensus         2 ~~~~~v~l~k~~--~g~G~~~~~~~~~----~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~   72 (88)
T 3bpu_A            2 MELITVHIVKGP--MGFGFTIADSPGG----GGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKKNVQALTHNQVVDMLVES   72 (88)
T ss_dssp             EEEEEEEEECBT--TBSSCEEEECTTS----SSEEEEEC-CC--CC-TT-CCTTCEEEEETTEECTTSCHHHHHHHHHTS
T ss_pred             CcEEEEEEEcCC--CceeEEEEecCCC----CcEEEEEe-cCChhH-hC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Confidence            356789999985  6899999876542    58999997 999999 77 999999999999999999999999999964


Q ss_pred             -CCCceec
Q psy8436         299 -FPQSSKL  305 (306)
Q Consensus       299 -~~~~~~l  305 (306)
                       ++..+.|
T Consensus        73 ~~g~~v~l   80 (88)
T 3bpu_A           73 PKGSEVTL   80 (88)
T ss_dssp             CTTCEEEE
T ss_pred             CCCCEEEE
Confidence             4555544

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.45  E-value=3.3e-13  Score=99.01  Aligned_cols=77  Identities=32%  Similarity=0.511  Sum_probs=65.5

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .+++.+.|.+.....+|||++.++.+..   .|++|..|.+++||+++| |++||+|++|||+++.++++.+++.+++..
T Consensus         7 ~~~~~v~l~~~~~~~~lG~~~~~~~~~~---~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~   82 (101)
T 1uez_A            7 GEVRLVSLRRAKAHEGLGFSIRGGSEHG---VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGS   82 (101)
T ss_dssp             CCCEEECCCCCCTTTCSSEEEEECTTTT---CCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSS
T ss_pred             CccEEEEEEECCCCCcccEEEeCCCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHhhcCC
Confidence            4567788887554578999999876532   589999999999999999 999999999999999999998888887654


Q ss_pred             C
Q psy8436         299 F  299 (306)
Q Consensus       299 ~  299 (306)
                      .
T Consensus        83 ~   83 (101)
T 1uez_A           83 K   83 (101)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=99.45  E-value=5e-13  Score=98.62  Aligned_cols=82  Identities=22%  Similarity=0.247  Sum_probs=67.0

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCC----CCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDS----PKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK  296 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~----~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk  296 (306)
                      .+.+.|.|... .+|||.+.+....    .....+++|..|.+++||+++| |++||+|++|||+++.++++++++.+|+
T Consensus        16 ~~~v~l~~~~~-~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~   93 (104)
T 2z17_A           16 RKLVTVEKQDN-ETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIR   93 (104)
T ss_dssp             CCEEEEECCTT-SCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCHHHHHHHHH
T ss_pred             ceEEEEEeCCC-CCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHH
Confidence            34677888753 6899999874221    1113589999999999999999 9999999999999999999999999999


Q ss_pred             hcCCCceec
Q psy8436         297 DIFPQSSKL  305 (306)
Q Consensus       297 ~~~~~~~~l  305 (306)
                      ..++ .+.|
T Consensus        94 ~~~~-~v~l  101 (104)
T 2z17_A           94 SSGN-LLTI  101 (104)
T ss_dssp             HTTT-EEEE
T ss_pred             hCCC-cEEE
Confidence            9855 5544

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.45  E-value=6.9e-14  Score=104.35  Aligned_cols=82  Identities=18%  Similarity=0.301  Sum_probs=71.1

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC-e
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS-H   83 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~-~   83 (306)
                      .|+|.|.| ...+|||.+.+.      .+++|..|.+++||+++| |+.||+|++|||+++.+++++++..+|+.+++ .
T Consensus        16 ~r~v~l~~-~~~~~G~~l~~~------~~v~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~   87 (111)
T 1vae_A           16 PRGIHFTV-EEGDLGFTLRGN------TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEE   87 (111)
T ss_dssp             CCCCCEEC-CSSCCSCCEESS------SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSE
T ss_pred             CeEEEEEc-CCCcccEEEeCC------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCce
Confidence            46788888 567999999654      468999999999999999 99999999999999999999999999998755 5


Q ss_pred             EEEEEEeCCCC
Q psy8436          84 VEIVICRNPDD   94 (306)
Q Consensus        84 v~L~v~r~~~~   94 (306)
                      +.|+|.+....
T Consensus        88 v~l~V~~~~~~   98 (111)
T 1vae_A           88 VEMKVVSLLDS   98 (111)
T ss_dssp             ECEEEECEECC
T ss_pred             EEEEEEecCCC
Confidence            99999876443

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=7.7e-13  Score=96.87  Aligned_cols=80  Identities=31%  Similarity=0.551  Sum_probs=67.4

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ..++.|.|.|... ..|||++.+..+.   ..|++|..|.+++||+++| |++||+|++|||+++.++++.+++.+|+. 
T Consensus         9 ~~~~~v~l~~~~~-~~lG~~~~~~~~~---~~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-   82 (100)
T 2eeh_A            9 DIIHSVRVEKSPA-GRLGFSVRGGSEH---GLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTS-   82 (100)
T ss_dssp             CEECCEEECCCSS-SSCSEEEECCTTT---TCCEEEEEECTTSHHHHHT-CCSSCEEEEETTEECSSCCHHHHHHHHHS-
T ss_pred             CeEEEEEEEECCC-CCccEEEEccccC---CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC-
Confidence            4466788988863 5799999887643   2589999999999999999 99999999999999999999999999987 


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                       +..+.|
T Consensus        83 -~~~v~l   88 (100)
T 2eeh_A           83 -SSRLHM   88 (100)
T ss_dssp             -CSSEEE
T ss_pred             -CCEEEE
Confidence             454443

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=2.2e-13  Score=100.91  Aligned_cols=74  Identities=23%  Similarity=0.297  Sum_probs=65.0

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.|.|.|.  ..+|||++.+..+.    .|++|..|.++|||+++| |++||+|++|||+++.++++.+++.+++..
T Consensus         7 ~~~r~v~l~k~--~~~~G~~l~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   79 (106)
T 2eei_A            7 GQPRLCYLVKE--GGSYGFSLKTVQGK----KGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKS   79 (106)
T ss_dssp             SSSEEEEEECC--SSSCSCCEECCSSC----CSCEECCCCTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEEEEC--CCCCCEEEEeccCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            34578999996  37899999876542    589999999999999999 999999999999999999999999999876


Q ss_pred             C
Q psy8436         299 F  299 (306)
Q Consensus       299 ~  299 (306)
                      .
T Consensus        80 ~   80 (106)
T 2eei_A           80 G   80 (106)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.44  E-value=1.9e-13  Score=100.67  Aligned_cols=79  Identities=25%  Similarity=0.416  Sum_probs=66.5

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .+.++|+|...   .+|||++.++.+..   .+++|..|.+++||+++| |++||+|++|||+++.++++.+++.++++.
T Consensus         4 g~~~~v~l~~~---~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~   76 (103)
T 1wf7_A            4 GSSGSVSLVGP---APWGFRLQGGKDFN---MPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKAC   76 (103)
T ss_dssp             CCCEEEEEESS---SCCSCCEEEETTTT---EEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHC
T ss_pred             CCEEEEEEeCC---CccCEEEeccccCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            45677888732   67999999887642   579999999999999999 999999999999999999999999999876


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                       ...+.|
T Consensus        77 -g~~v~l   82 (103)
T 1wf7_A           77 -TGSLNM   82 (103)
T ss_dssp             -SSEEEE
T ss_pred             -CCeEEE
Confidence             444443

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=99.44  E-value=4.3e-13  Score=98.79  Aligned_cols=81  Identities=36%  Similarity=0.597  Sum_probs=66.5

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCC---CC--CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDS---PK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIA  293 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~---~~--~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~  293 (306)
                      +..+.|.+.+.+   +|||++.++.+.   +.  ...|++|..|.++|||++ | |++||+|++|||+++.++++.+++.
T Consensus        10 ~~~~~v~l~~~~---~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~   84 (103)
T 1n7t_A           10 KQEIRVRVEKDP---ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVS   84 (103)
T ss_dssp             CCCEEEEEECSS---CCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-S-CCTTCEEEEETTEECSSCCHHHHHH
T ss_pred             cEEEEEEEccCC---CccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-C-CCCCCEEEEECCEECCCCCHHHHHH
Confidence            456678888873   699999997642   11  246899999999999999 7 9999999999999999999999999


Q ss_pred             HHhhcCCCceec
Q psy8436         294 MFKDIFPQSSKL  305 (306)
Q Consensus       294 ~Lk~~~~~~~~l  305 (306)
                      +++.. +..+.|
T Consensus        85 ~~~~~-g~~v~l   95 (103)
T 1n7t_A           85 LLKTF-QNTVEL   95 (103)
T ss_dssp             HHHHC-CSEEEE
T ss_pred             HhhcC-CCeEEE
Confidence            99854 444443

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.44  E-value=1.2e-12  Score=97.93  Aligned_cols=80  Identities=20%  Similarity=0.378  Sum_probs=68.2

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP  300 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~  300 (306)
                      .++|.|.++. ..+|||.+.+..+.    .+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+..++
T Consensus         2 ~~~v~l~~~~-~~glG~~~~~~~~~----~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g   76 (112)
T 1qau_A            2 VISVRLFKRK-VGGLGFLVKERVSK----PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIAS   76 (112)
T ss_dssp             EEEEEEECBT-TTBTSEEEEECSSS----SCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCS
T ss_pred             EEEEEEEcCC-CCceeEEEEecCCC----CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            4678888875 37899999876642    589999999999999999339999999999999999999999999998776


Q ss_pred             Cceec
Q psy8436         301 QSSKL  305 (306)
Q Consensus       301 ~~~~l  305 (306)
                      ..+.|
T Consensus        77 ~~v~l   81 (112)
T 1qau_A           77 ETHVV   81 (112)
T ss_dssp             SSEEE
T ss_pred             CcEEE
Confidence            66654

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=99.43  E-value=4.5e-13  Score=123.32  Aligned_cols=83  Identities=18%  Similarity=0.355  Sum_probs=75.4

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCC
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDS   82 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~   82 (306)
                      +|.|.+.|.  .+|||++.|+..    .|+||..|.+||||+++| |++||+|++|||+++.++++++++.+|+.  ++.
T Consensus         2 ~r~V~l~k~--~~lG~~i~gg~~----~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~   74 (468)
T 3shw_A            2 MKLVKFRKG--DSVGLRLAGGND----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGE   74 (468)
T ss_dssp             EEEEEEECC--SSCCEEEEEETT----TEEEEEEECSSSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTS
T ss_pred             ceEEEEecC--CccceEEEccCc----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCC
Confidence            578999984  789999998865    479999999999999999 99999999999999999999999999998  688


Q ss_pred             eEEEEEEeCCCC
Q psy8436          83 HVEIVICRNPDD   94 (306)
Q Consensus        83 ~v~L~v~r~~~~   94 (306)
                      .|+|+|.|+...
T Consensus        75 ~v~L~V~r~g~~   86 (468)
T 3shw_A           75 EVTILAQKKKDV   86 (468)
T ss_dssp             EEEEEEEECHHH
T ss_pred             EEEEEEEECCcc
Confidence            999999997543

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.43  E-value=3.3e-13  Score=101.11  Aligned_cols=80  Identities=43%  Similarity=0.652  Sum_probs=68.9

Q ss_pred             ccceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       218 ~~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      ....+.|.|.|..  .+|||+|.++.+.    .|++|..|.++++|+++|+|++||+|++|||+++.++++.+++.+++.
T Consensus        13 ~~~~~~v~l~k~~--~glG~~l~~~~~~----~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~   86 (113)
T 1um7_A           13 AREPRKIILHKGS--TGLGFNIVGGEDG----EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKR   86 (113)
T ss_dssp             CCSEEEEEEECCS--SCSSBCCBCCSTT----CCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHS
T ss_pred             CCceEEEEEEECC--CcccEEEEeccCC----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            3567899999874  6899999887752    589999999999999998899999999999999999999999999986


Q ss_pred             cCCCcee
Q psy8436         298 IFPQSSK  304 (306)
Q Consensus       298 ~~~~~~~  304 (306)
                      . ...+.
T Consensus        87 ~-~~~v~   92 (113)
T 1um7_A           87 A-GQSVT   92 (113)
T ss_dssp             C-CSEEE
T ss_pred             C-CCcEE
Confidence            4 44443

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.43  E-value=1.1e-13  Score=101.96  Aligned_cols=80  Identities=39%  Similarity=0.668  Sum_probs=67.0

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.+.+.+..  .+|||++.++.+..   .|++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+|+..
T Consensus        10 ~~~~~v~l~~~~--~g~G~~~~~~~~~~---~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   84 (103)
T 1wfv_A           10 FDYFTVDMEKGA--KGFGFSIRGGREYK---MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSG   84 (103)
T ss_dssp             SCCEECCEECCT--TSSSBCCEEETTTT---EEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHH
T ss_pred             ceEEEEEEecCC--CcCCEEEeccccCC---CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            445677888774  57999999877542   4899999999999999988999999999999999999999999999843


Q ss_pred             CCCcee
Q psy8436         299 FPQSSK  304 (306)
Q Consensus       299 ~~~~~~  304 (306)
                       +..+.
T Consensus        85 -g~~v~   89 (103)
T 1wfv_A           85 -GRRVR   89 (103)
T ss_dssp             -CSEEC
T ss_pred             -CCeEE
Confidence             34443

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=99.42  E-value=6.8e-13  Score=95.17  Aligned_cols=76  Identities=20%  Similarity=0.380  Sum_probs=61.3

Q ss_pred             cceEEEEEEeCCC-CCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         219 LSMFTVTFQKGPG-QKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       219 ~~~~~v~l~k~~~-~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      ...+.|.|.|.+. ..+|||++......  +..|++|..|.++|||+++| |++||+|++|||+++.+++++++..+|++
T Consensus         5 ~~~~~v~i~k~~~~~~~~Gf~v~~~~~~--~~~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~l~~~l~~   81 (94)
T 3kzd_A            5 KVTHSIHIEKSDTAADTYGFSLSSVEED--GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQ   81 (94)
T ss_dssp             CEEEEEEEEC------CCSEEEEEECSS--SSCEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHS
T ss_pred             cceeEEEEEeCCCCcCCcCEEEEecCCC--CcCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC
Confidence            3457788888863 24799999874432  22589999999999999998 99999999999999999999999999984

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=99.42  E-value=6.7e-13  Score=95.70  Aligned_cols=78  Identities=15%  Similarity=0.353  Sum_probs=66.9

Q ss_pred             EEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc---CCC
Q psy8436           6 KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN---KDS   82 (306)
Q Consensus         6 ~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~---~~~   82 (306)
                      +.+.|.+ ...++||.+....     .+.+|..|.++|||+++| |++||+|++|||..+...+++++...++.   .+.
T Consensus        19 ~~l~l~~-~~~g~G~~l~~~~-----~~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~   91 (101)
T 3qik_A           19 KRLLILP-QEEDYGFDIEEKN-----KAVVVKSVQRGSLAEVAG-LQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRR   91 (101)
T ss_dssp             EEEEECC-CSSSSSEEEEEET-----TEEEEEEECTTSHHHHHT-CCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTC
T ss_pred             CeEEEEe-CCCcccEEEEccC-----CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCC
Confidence            3445555 5679999998632     358999999999999999 99999999999999988899999999987   488


Q ss_pred             eEEEEEEe
Q psy8436          83 HVEIVICR   90 (306)
Q Consensus        83 ~v~L~v~r   90 (306)
                      .|.|+|+.
T Consensus        92 ~v~LLV~~   99 (101)
T 3qik_A           92 PLRLLVAT   99 (101)
T ss_dssp             CEEEEEEC
T ss_pred             eEEEEEec
Confidence            99999975

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.42  E-value=7e-13  Score=101.03  Aligned_cols=90  Identities=20%  Similarity=0.371  Sum_probs=72.6

Q ss_pred             ccEEEEEEeCC-CCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-C
Q psy8436           4 QFKVFRVVKDD-SNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-D   81 (306)
Q Consensus         4 ~~~~v~l~r~~-~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~   81 (306)
                      +++.+.+.+.. ..+|||++..........|++|..|.++|||+++|+|++||+|++|||+.+.  ++.++..+|+.. +
T Consensus        19 ~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~--~~~~~~~~l~~~~g   96 (124)
T 1wh1_A           19 ELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSEEN   96 (124)
T ss_dssp             EECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCSSC
T ss_pred             eEEEEEEEecCCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECC--CHHHHHHHHHhCCC
Confidence            44455565543 3589999987754322358999999999999999999999999999999998  588999999886 6


Q ss_pred             CeEEEEEEeCCCCC
Q psy8436          82 SHVEIVICRNPDDA   95 (306)
Q Consensus        82 ~~v~L~v~r~~~~~   95 (306)
                      ..|.|+|.|.....
T Consensus        97 ~~v~l~v~R~g~~~  110 (124)
T 1wh1_A           97 KNFSLLIARPELQL  110 (124)
T ss_dssp             CSCCEEEEECSSCC
T ss_pred             CEEEEEEEECCEEe
Confidence            78999999976543

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.42  E-value=1.5e-12  Score=93.29  Aligned_cols=74  Identities=23%  Similarity=0.426  Sum_probs=61.3

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      ....+.+.+.....+|||.+.+         | +|..|.++|+|+++| |++||+|++|||+++.++++.+++.+|++. 
T Consensus        11 ~~~~~~i~~~~~~~~lG~~~~~---------G-~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~-   78 (90)
T 1y7n_A           11 NVTTVLIRRPDLRYQLGFSVQN---------G-IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNA-   78 (90)
T ss_dssp             SCEEEEEEESSTTSCCCEEEET---------T-EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHC-
T ss_pred             CcceEEEEeCCCccccCeEecC---------C-EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            3445666666555789999853         4 899999999999999 999999999999999999999999999965 


Q ss_pred             CCceec
Q psy8436         300 PQSSKL  305 (306)
Q Consensus       300 ~~~~~l  305 (306)
                      +..+.|
T Consensus        79 g~~v~l   84 (90)
T 1y7n_A           79 VGEIHM   84 (90)
T ss_dssp             CEEEEE
T ss_pred             CCeEEE
Confidence            455444

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.42  E-value=1.5e-12  Score=94.57  Aligned_cols=76  Identities=32%  Similarity=0.471  Sum_probs=63.7

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .+.+.+.|.|..  .+|||+|.+..      .|++|..|.++  |+++| |++||+|++|||+++.+++|++++++|+..
T Consensus         9 ~~~~~v~l~~~~--~g~G~~i~~~~------~Gv~V~~v~~~--a~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~   77 (96)
T 1ujv_A            9 AELMTLTIVKGA--QGFGFTIADSP------TGQRVKQILDI--QGCPG-LCEGDLIVEINQQNVQNLSHTEVVDILKDC   77 (96)
T ss_dssp             CCCEEEEEECCS--SSSSEEEEEET------TEEEEEEESCG--GGSTT-CCSSCEEEEETTEECSSCCHHHHHHHHHHS
T ss_pred             ceEEEEEEEeCC--CceeEEEEcCC------CCEEEEEEecc--cccCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            556788999885  78999997533      38999999983  66666 999999999999999999999999999998


Q ss_pred             C-CCceec
Q psy8436         299 F-PQSSKL  305 (306)
Q Consensus       299 ~-~~~~~l  305 (306)
                      + +..+.|
T Consensus        78 ~~g~~v~l   85 (96)
T 1ujv_A           78 PIGSETSL   85 (96)
T ss_dssp             CTTSEEEE
T ss_pred             CCCCEEEE
Confidence            6 666654

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.42  E-value=9.1e-13  Score=102.36  Aligned_cols=86  Identities=30%  Similarity=0.391  Sum_probs=69.8

Q ss_pred             cceEEEEEEeCC--CCCcccEEEEcCCCCC---------CCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCC
Q psy8436         219 LSMFTVTFQKGP--GQKSLGFSIVGGRDSP---------KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKT  287 (306)
Q Consensus       219 ~~~~~v~l~k~~--~~~~lG~~l~gg~~~~---------~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~  287 (306)
                      ..++.|.|.+..  +..+|||++.++.+..         ....|++|..|.++|||+++| |++||+|++|||+++.+++
T Consensus        22 ~~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~  100 (139)
T 2vz5_A           22 SMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVT  100 (139)
T ss_dssp             CEEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCC
T ss_pred             CceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEEcCCCC
Confidence            456778887642  1237999999876631         113699999999999999999 9999999999999999999


Q ss_pred             HHHHHHHHhhcCCCceec
Q psy8436         288 HAEAIAMFKDIFPQSSKL  305 (306)
Q Consensus       288 ~~eav~~Lk~~~~~~~~l  305 (306)
                      +.+++.+|+..++..+.|
T Consensus       101 ~~~~~~~l~~~~g~~v~l  118 (139)
T 2vz5_A          101 HDQARKRLTKRSEEVVRL  118 (139)
T ss_dssp             HHHHHHHHCCTTCSEEEE
T ss_pred             HHHHHHHHHhCCCCEEEE
Confidence            999999999866666654

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=99.42  E-value=1.3e-12  Score=100.04  Aligned_cols=80  Identities=26%  Similarity=0.470  Sum_probs=68.9

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.|.|.+..  .+|||.+.++.+.    .|++|..|.++|+|+++| |++||+|++|||+++.++++.++..+|+..
T Consensus         8 ~~~r~v~l~~~~--~g~G~~l~~~~~~----~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   80 (128)
T 2kjd_A            8 LRPRLCTMKKGP--SGYGFNLHSDKSK----PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAG   80 (128)
T ss_dssp             CCCEEEEEECCS--SSCCEEEEECSSS----CSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTT
T ss_pred             CCcEEEEEecCC--CcccEEEEecCCC----CCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            345678898885  6899999887653    489999999999999999 999999999999999999999999999988


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      ++..+.|
T Consensus        81 ~~~~~~l   87 (128)
T 2kjd_A           81 GDETKLL   87 (128)
T ss_dssp             CSEEEEE
T ss_pred             CCCEEEE
Confidence            6555433

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.42  E-value=5.2e-13  Score=109.69  Aligned_cols=80  Identities=29%  Similarity=0.528  Sum_probs=69.1

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.|.|.|..+ .+|||++.++.+.   ..|+||..|.++|||+++| |++||+|++|||.++.+++|.+++.+|+. 
T Consensus        83 ~~~~~v~l~k~~~-~~lG~~i~~~~~~---~~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~l~~-  156 (192)
T 3k1r_A           83 RKLKEVRLDRLHP-EGLGLSVRGGLEF---GCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRT-  156 (192)
T ss_dssp             SSCEEEEEETTST-TCCCEEEEEEGGG---TEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHTS-
T ss_pred             CceEEEEEEeCCC-CceeEEEEccccc---CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHcC-
Confidence            4467899999864 6999999987653   2589999999999999999 99999999999999999999999999988 


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                       +..+.|
T Consensus       157 -~~~v~l  162 (192)
T 3k1r_A          157 -EKTVSI  162 (192)
T ss_dssp             -SSEEEE
T ss_pred             -CCeEEE
Confidence             455544

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.42  E-value=9.7e-13  Score=99.17  Aligned_cols=90  Identities=12%  Similarity=0.310  Sum_probs=70.0

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCC-CCcCCCeEEEEeCC--CChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDG-GAHFSPYLISHIEP--GGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK   80 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~-~~~~~gi~V~~V~~--gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~   80 (306)
                      .++.+.+.+...+.+||.+.-... .....|++|..|.+  ++||+++| |+.||+|++|||+.+.+++|+++..+|+..
T Consensus        15 ~v~l~~~~~~~~g~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~~v~~~~~~dl~~~l~~~   93 (118)
T 2yub_A           15 SVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNA-IHPGDRILEINGTPVRTLRVEEVEDAIKQT   93 (118)
T ss_dssp             EEEEEEECSCSSSSCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSSBTTTSCHHHHHHHHHCC
T ss_pred             eeEEeccCCccCCCceEEEEeccccccCCCcEEEEEecCCCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHhC
Confidence            344444444444556766663322 11225899999999  99999999 999999999999999999999999999987


Q ss_pred             CCeEEEEEEeCCCC
Q psy8436          81 DSHVEIVICRNPDD   94 (306)
Q Consensus        81 ~~~v~L~v~r~~~~   94 (306)
                      +..+.|+|.|....
T Consensus        94 g~~v~l~v~R~g~~  107 (118)
T 2yub_A           94 SQTLQLLIEHDPVP  107 (118)
T ss_dssp             SSCEEEEEEECSSC
T ss_pred             CCEEEEEEEECCEE
Confidence            77899999997643

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.41  E-value=3.5e-13  Score=102.42  Aligned_cols=79  Identities=16%  Similarity=0.284  Sum_probs=67.7

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.+.|.+..  .+|||++.+..      .+++|..|.++|||+++|+|++||+|++|||+++.+.+|.+++.+|+..
T Consensus        26 ~~~~~~~l~k~~--~glG~~i~~~~------~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~   97 (126)
T 1wif_A           26 NKVIQTKLTVGN--LGLGLVVIQNG------PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNI   97 (126)
T ss_dssp             CCEEEEEEECCT--TCCCCCEEEET------TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSC
T ss_pred             CceEEEEEecCC--ceEeEEEEcCC------CcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcC
Confidence            456778888885  68999998643      4799999999999999999999999999999999999999999999986


Q ss_pred             C-CCceec
Q psy8436         299 F-PQSSKL  305 (306)
Q Consensus       299 ~-~~~~~l  305 (306)
                      + +..+.|
T Consensus        98 ~~G~~v~l  105 (126)
T 1wif_A           98 TIGTVLQI  105 (126)
T ss_dssp             CSSCEEEE
T ss_pred             CCCCEEEE
Confidence            4 555554

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.41  E-value=3e-13  Score=97.90  Aligned_cols=76  Identities=37%  Similarity=0.521  Sum_probs=63.5

Q ss_pred             EEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCce
Q psy8436         224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSS  303 (306)
Q Consensus       224 v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~  303 (306)
                      +.+.+.. ..+|||++.++.+..   .|++|..|.+++||+++| |++||+|++|||+++.+++|.+++.+|+..+ ..+
T Consensus         8 ~~~~~~~-~~~lG~~l~~g~~~~---~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v   81 (94)
T 1vb7_A            8 LTVDVAG-PAPWGFRISGGRDFH---TPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPL   81 (94)
T ss_dssp             EEEEECS-SSCCSBCCEEETTTT---EEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSE
T ss_pred             EEEEecC-CCCccEEEecccCCC---CCeEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcE
Confidence            3444333 368999999877642   589999999999999998 9999999999999999999999999999876 555


Q ss_pred             ec
Q psy8436         304 KL  305 (306)
Q Consensus       304 ~l  305 (306)
                      .|
T Consensus        82 ~l   83 (94)
T 1vb7_A           82 RL   83 (94)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=99.11  E-value=2.1e-14  Score=107.34  Aligned_cols=81  Identities=28%  Similarity=0.466  Sum_probs=67.3

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      .++.|.|.|... .+|||++.++.+..   .|++|..|.++|||+++++|++||+|++|||+++.++++.+++.+|++.+
T Consensus        27 ~~~~v~l~k~~~-~glG~~l~~g~~~~---~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~  102 (112)
T 2lob_A           27 GIRKVLLLKEDH-EGLGISITGGKEHG---VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR  102 (112)
Confidence            456788888764 78999999886642   58999999999999994349999999999999999999999999998765


Q ss_pred             CCceec
Q psy8436         300 PQSSKL  305 (306)
Q Consensus       300 ~~~~~l  305 (306)
                      +. +.|
T Consensus       103 ~~-v~l  107 (112)
T 2lob_A          103 GE-IEF  107 (112)
Confidence            44 443

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=99.40  E-value=1.3e-12  Score=118.55  Aligned_cols=85  Identities=18%  Similarity=0.345  Sum_probs=75.2

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--C
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--K   80 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~   80 (306)
                      .+++.|.+.+.  .+|||++.++..    .|++|..|.+||||+++| |++||+|++|||+++.++++++++.+|+.  .
T Consensus         8 ~~~~~v~~~k~--~~lG~~i~gg~~----~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~   80 (391)
T 3tsz_A            8 PSMKLVKFRKG--DSVGLRLAGGND----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPK   80 (391)
T ss_dssp             -CEEEEEEECC--SSCCEEEEEETT----TEEEEEEECTTCHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCT
T ss_pred             CCcEEEEeecC--CceeEEEEecCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhhcC
Confidence            45788888884  379999998765    479999999999999999 99999999999999999999999999995  6


Q ss_pred             CCeEEEEEEeCCCC
Q psy8436          81 DSHVEIVICRNPDD   94 (306)
Q Consensus        81 ~~~v~L~v~r~~~~   94 (306)
                      +..|+|+|.|+...
T Consensus        81 g~~v~l~v~r~~~~   94 (391)
T 3tsz_A           81 GEEVTILAQKKKDV   94 (391)
T ss_dssp             TSEEEEEEEECHHH
T ss_pred             CCeEEEEEeeCCcc
Confidence            88999999997644

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=99.40  E-value=5.9e-12  Score=117.84  Aligned_cols=53  Identities=9%  Similarity=0.160  Sum_probs=47.8

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL  305 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l  305 (306)
                      .|++|.+|.++++|+..| ++.||+|++|||++|.+  .++..++|++++++.++|
T Consensus       415 ~gVvvs~V~~~s~a~~~g-~~~gdiI~~vNg~~V~s--~~~l~~~l~~~k~~~l~~  467 (539)
T 4fln_A          415 QIVILSQVLANEVNIGYE-DMNNQQVLKFNGIPIRN--IHHLAHLIDMCKDKYLVF  467 (539)
T ss_dssp             CCEEEEEECCCGGGTTCS-SCCSEEEEEETTEECCS--HHHHHHHHHTCCSSEEEE
T ss_pred             eEEEEEEecCCchhhhcC-CCCCCEEEeECCEEcCC--HHHHHHHHHHcCCCeEEE
Confidence            589999999999999988 99999999999999976  579999999998876654

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.39  E-value=1.2e-12  Score=98.18  Aligned_cols=79  Identities=24%  Similarity=0.425  Sum_probs=67.6

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      ..+++.|.+... ..|||.+.+..+.    .|++|..|.++|||+++| |++||+|++|||+++.++++.+++.+|+.. 
T Consensus        13 dp~~~~l~~~~~-~~~G~~l~~~~~~----~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~-   85 (114)
T 2edz_A           13 NPRECKLSKQEG-QNYGFFLRIEKDT----DGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKS-   85 (114)
T ss_dssp             CCEEEEEECCTT-CCCSCEEECCTTC----CSCEEECCCTTCTTGGGT-CCTTCEEEEESSSBCSSSCHHHHHHHHHHT-
T ss_pred             CCEEEEEeCCCC-CcccEEEEEecCC----CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            457888888753 6899999876543    589999999999999999 999999999999999999999999999875 


Q ss_pred             CCceec
Q psy8436         300 PQSSKL  305 (306)
Q Consensus       300 ~~~~~l  305 (306)
                      +..+.|
T Consensus        86 g~~v~l   91 (114)
T 2edz_A           86 GNSVTL   91 (114)
T ss_dssp             CSEEEE
T ss_pred             CCEEEE
Confidence            555554

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.39  E-value=2.6e-13  Score=112.96  Aligned_cols=85  Identities=14%  Similarity=0.285  Sum_probs=74.6

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      -..+.|.|.+.. .+|||.|.++...   .|++|..|.++|||+++| |+.||+|++|||+.+.++++.++..+|+..+.
T Consensus         8 ~~~r~v~l~k~~-~glG~~l~~~~~~---~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~   82 (216)
T 2krg_A            8 LRPRLCTMKKGP-SGYGFNLHSDKSK---PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGD   82 (216)
T ss_dssp             CCCEEEEEECCS-SSSCEEECCCSSS---CSCBEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCTHHHHHHHHHHCS
T ss_pred             cceEEEEEEeCC-CCceEEEEecCCC---CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCC
Confidence            457889999954 6899999877543   489999999999999999 99999999999999999999999999988777


Q ss_pred             eE-EEEEEeCC
Q psy8436          83 HV-EIVICRNP   92 (306)
Q Consensus        83 ~v-~L~v~r~~   92 (306)
                      .| .|+|.|..
T Consensus        83 ~v~~l~V~R~g   93 (216)
T 2krg_A           83 ETKLLVVDRET   93 (216)
T ss_dssp             EEEEEECCHHH
T ss_pred             eEEEEEEEECC
Confidence            88 88887754

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.39  E-value=2.4e-12  Score=98.01  Aligned_cols=74  Identities=35%  Similarity=0.634  Sum_probs=62.0

Q ss_pred             EEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh-cCCC
Q psy8436         223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD-IFPQ  301 (306)
Q Consensus       223 ~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~-~~~~  301 (306)
                      .+.+.+.   .+|||.+.++.+     .|++|..|.++|||+++| |++||+|++|||+++.++++++++.+|++ .++.
T Consensus        32 ~~~~~~~---~~lG~~l~~~~~-----~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~  102 (124)
T 3tsv_A           32 LVKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGE  102 (124)
T ss_dssp             EEEEECS---SCCCEEEEECTT-----SCEEEEEECTTCHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTC
T ss_pred             EEEcCCC---CceeEEEecCCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCC
Confidence            3444444   579999998765     589999999999999999 99999999999999999999999998887 4445


Q ss_pred             ceec
Q psy8436         302 SSKL  305 (306)
Q Consensus       302 ~~~l  305 (306)
                      .+.|
T Consensus       103 ~v~l  106 (124)
T 3tsv_A          103 EVTI  106 (124)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.38  E-value=1.3e-12  Score=95.49  Aligned_cols=79  Identities=23%  Similarity=0.258  Sum_probs=62.4

Q ss_pred             EEEEEeCCCCCcccEEEEcCCCCC----CCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         223 TVTFQKGPGQKSLGFSIVGGRDSP----KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       223 ~v~l~k~~~~~~lG~~l~gg~~~~----~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      +|.|.+..  .+|||++.++....    ....|++|..|.++|||+++| |++||+|++|||+++.++++.+++.+|++ 
T Consensus         5 ~v~l~~~~--~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~-   80 (99)
T 3khf_A            5 PIVIHSSG--KKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLK-   80 (99)
T ss_dssp             CEEEEC-C--CCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHH-
T ss_pred             CEEEEeCC--CCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhc-
Confidence            47777764  68999998654321    001367899999999999999 99999999999999999999999999995 


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      ++..+.|
T Consensus        81 ~g~~v~l   87 (99)
T 3khf_A           81 SGNKISL   87 (99)
T ss_dssp             SCSEEEE
T ss_pred             CCCEEEE
Confidence            4455443

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.37  E-value=2e-12  Score=106.52  Aligned_cols=86  Identities=23%  Similarity=0.316  Sum_probs=72.7

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCC-CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPK-GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~-~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      .+.++|.|.|+.. .+|||++.++.+... +..+++|..|.++|||+++|+|++||+|++|||+++.+++|.++..+|+.
T Consensus         5 ~~~~~v~l~~~~~-~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~   83 (196)
T 1p1d_A            5 TETTEVVLTADPV-TGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRD   83 (196)
T ss_dssp             CEEEEEEEECBTT-TBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHT
T ss_pred             cEEEEEEEEeCCC-CccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            4677899998864 799999999865432 24689999999999999998899999999999999999999999999998


Q ss_pred             cC-CCceec
Q psy8436         298 IF-PQSSKL  305 (306)
Q Consensus       298 ~~-~~~~~l  305 (306)
                      .+ +..+.|
T Consensus        84 ~~~g~~v~l   92 (196)
T 1p1d_A           84 SSITSKVTL   92 (196)
T ss_dssp             CCSSSEEEE
T ss_pred             CCCCCeEEE
Confidence            86 444443

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=5.8e-13  Score=96.74  Aligned_cols=77  Identities=25%  Similarity=0.368  Sum_probs=64.5

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...++|+|.+.+...+|||.+.+.       .|++|..|.++|||+ +| |++||+|++|||+++.+++|.+++.+++. 
T Consensus         7 ~~~~~v~l~~~~~~~~~G~~l~~~-------~~~~V~~V~~~spA~-ag-L~~GD~Il~ing~~v~~~~~~~~~~~~~~-   76 (96)
T 2edv_A            7 GVRHTVKIDKDTLLQDYGFHISES-------LPLTVVAVTAGGSAH-GK-LFPGDQILQMNNEPAEDLSWERAVDILRE-   76 (96)
T ss_dssp             CEEEEEEECCCSSSCSCSBCCCSS-------SSCBCCCBCSSSSST-TT-SCTTCBEEEESSCBSTTCCHHHHHHHHHH-
T ss_pred             CccEEEEEEECCCCCcccEEEecC-------CCeEEEEECCCCchh-hC-CCCCCEEEEECCEECCCCCHHHHHHHHHc-
Confidence            446789999886445899999761       489999999999995 55 99999999999999999999999999998 


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      .+..+.|
T Consensus        77 ~g~~v~l   83 (96)
T 2edv_A           77 AEDSLSI   83 (96)
T ss_dssp             CSSCEEE
T ss_pred             CCCeEEE
Confidence            4555544

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.37  E-value=1.4e-12  Score=95.47  Aligned_cols=76  Identities=20%  Similarity=0.305  Sum_probs=64.5

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.+.+.+..  .+|||.+.+.       .+++|..|.+++||+++| |++||+|++|||+++.++++.+++.+|+..
T Consensus        14 ~~~~~v~l~~~~--~g~G~~~~~~-------~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~   83 (100)
T 1whd_A           14 GEKLQITIRRGK--DGFGFTICCD-------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSC   83 (100)
T ss_dssp             CEEEEEEEECCS--SSSSCBCCCS-------SSCBCCBCCTTSHHHHHT-CCSSCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             cceEEEEEECCC--CeeeEEEeCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            456778888774  6899998653       379999999999999999 999999999999999999999999999986


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      +.. +.|
T Consensus        84 ~~~-v~l   89 (100)
T 1whd_A           84 PSE-IIL   89 (100)
T ss_dssp             SSE-EEE
T ss_pred             CCe-EEE
Confidence            543 443

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.36  E-value=5e-12  Score=94.82  Aligned_cols=75  Identities=31%  Similarity=0.403  Sum_probs=63.9

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...++|.+.+.. ..+|||++.++.+..   .|++|..|.++++|+++| |++||+|++|||+++.++++.+++.+++..
T Consensus        14 ~~~~~v~~~~~~-~~~lG~~l~~~~~~~---~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~   88 (114)
T 1x5n_A           14 NKEKKVFISLVG-SRGLGCSISSGPIQK---PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSS   88 (114)
T ss_dssp             CSSEEEEECCCS-SCCCCEEEEECCSSS---CSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHC
T ss_pred             CCcEEEEEEEcC-CCceeEEEeecCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            334677776654 478999999876532   589999999999999998 999999999999999999998999999875

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=1.3e-12  Score=95.73  Aligned_cols=78  Identities=35%  Similarity=0.520  Sum_probs=62.8

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP  300 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~  300 (306)
                      ...+.+.+... .+|||++.++.+..   .+++|..|.+++||+++|.|++||+|++|||+++.++ +.+++.++++.. 
T Consensus        10 ~~~~~v~~~~~-~~~G~~~~gg~~~~---~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~-   83 (100)
T 2edp_A           10 FQYVPVQLQGG-APWGFTLKGGLEHC---EPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSF-   83 (100)
T ss_dssp             CEEEEEECCSC-SCCCCCEEEEGGGT---EEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCC-
T ss_pred             cEEEEEEECCC-CCcCEEEeccCCCC---CCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCC-
Confidence            44555555433 68999999877642   5799999999999999944999999999999999997 899999999763 


Q ss_pred             Ccee
Q psy8436         301 QSSK  304 (306)
Q Consensus       301 ~~~~  304 (306)
                      ..+.
T Consensus        84 ~~v~   87 (100)
T 2edp_A           84 RILK   87 (100)
T ss_dssp             SSCE
T ss_pred             CeEE
Confidence            4443

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.35  E-value=5.1e-12  Score=95.22  Aligned_cols=76  Identities=29%  Similarity=0.427  Sum_probs=64.5

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      +.+.|.+.+..  .+|||.+.++.+     .|++|..|.+++||+++| |++||+|++|||+++.++++.+++.+++. +
T Consensus        19 ~~~~v~l~~~~--~~lG~~~~~~~~-----~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~-~   89 (117)
T 1uit_A           19 EPRHVKVQKGS--EPLGISIVSGEK-----GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQ-Q   89 (117)
T ss_dssp             CCEEEEEECSS--CCCCEEEEECTT-----SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTS-C
T ss_pred             CCEEEEEEeCC--CCccEEEEccCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc-C
Confidence            45678998875  689999988765     589999999999999999 99999999999999999999998876664 4


Q ss_pred             CCcee
Q psy8436         300 PQSSK  304 (306)
Q Consensus       300 ~~~~~  304 (306)
                      ...+.
T Consensus        90 g~~v~   94 (117)
T 1uit_A           90 CDTIT   94 (117)
T ss_dssp             CSEEE
T ss_pred             CCeEE
Confidence            44443

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.35  E-value=5.4e-13  Score=99.47  Aligned_cols=74  Identities=23%  Similarity=0.311  Sum_probs=63.7

Q ss_pred             EEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCC
Q psy8436         222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQ  301 (306)
Q Consensus       222 ~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~  301 (306)
                      +.|.|.|+.  .+|||.+.+.       .+++|..|.++++|+++| |++||+|++|||+++.++++++++.+|+..++.
T Consensus        17 r~v~l~~~~--~~~G~~l~~~-------~~v~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~   86 (111)
T 1vae_A           17 RGIHFTVEE--GDLGFTLRGN-------TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGE   86 (111)
T ss_dssp             CCCCEECCS--SCCSCCEESS-------SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTS
T ss_pred             eEEEEEcCC--CcccEEEeCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc
Confidence            457788864  6899999654       378999999999999998 999999999999999999999999999988776


Q ss_pred             ceec
Q psy8436         302 SSKL  305 (306)
Q Consensus       302 ~~~l  305 (306)
                      .+.|
T Consensus        87 ~v~l   90 (111)
T 1vae_A           87 EVEM   90 (111)
T ss_dssp             EECE
T ss_pred             eEEE
Confidence            5544

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=6.6e-13  Score=101.49  Aligned_cols=81  Identities=31%  Similarity=0.402  Sum_probs=65.1

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCC-------------------------CCCCcEEEEEEcCCChhhhcCCCCCCCEE
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSP-------------------------KGNLGIFVKTIFQSGQAAENEKLREGDEI  275 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~-------------------------~~~~gi~V~~V~~~g~A~~~G~L~~GD~I  275 (306)
                      ++.|+|.|..  .+|||+|.+.....                         ....+++|..|.+++||+++| |++||+|
T Consensus         9 ~r~v~l~r~~--~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I   85 (126)
T 2yuy_A            9 PKTVTLKRTS--QGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDRI   85 (126)
T ss_dssp             CCCEEEECCS--SSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHT-CCSSCCC
T ss_pred             CEEEEEEECC--CCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcC-CCCCCEE
Confidence            4468999885  68999997521100                         012579999999999999999 9999999


Q ss_pred             EEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436         276 IAINGVPLENKTHAEAIAMFKDIFPQSSKL  305 (306)
Q Consensus       276 l~VNG~~v~~~~~~eav~~Lk~~~~~~~~l  305 (306)
                      ++|||+++.+++|++++.+|+.. +..+.|
T Consensus        86 ~~ing~~v~~~~~~~~~~~l~~~-g~~v~l  114 (126)
T 2yuy_A           86 IKVNGESVIGKTYSQVIALIQNS-DTTLEL  114 (126)
T ss_dssp             CEETTEECSSCCHHHHHHHHHTC-TTEEEE
T ss_pred             EEECCEECCCCCHHHHHHHHHcC-CCEEEE
Confidence            99999999999999999999975 555544

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.34  E-value=6.1e-13  Score=97.97  Aligned_cols=76  Identities=30%  Similarity=0.362  Sum_probs=63.8

Q ss_pred             EEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCC
Q psy8436         222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQ  301 (306)
Q Consensus       222 ~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~  301 (306)
                      ++|.+...   .+|||++.++.+..   .+++|..|.+++||+++| |++||+|++|||+++.++++.+++.+|+.. ..
T Consensus         7 ~~v~~~~~---~~lG~~l~~g~~~~---~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~   78 (103)
T 1v5l_A            7 GNVVLPGP---APWGFRLSGGIDFN---QPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAA-SY   78 (103)
T ss_dssp             BCCEEESS---SCCSBCCEEETTTT---EEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTC-CS
T ss_pred             EEEEEcCC---CCcCEEEeccccCC---CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC-CC
Confidence            34555433   57999999887642   489999999999999998 999999999999999999999999999987 55


Q ss_pred             ceec
Q psy8436         302 SSKL  305 (306)
Q Consensus       302 ~~~l  305 (306)
                      .+.|
T Consensus        79 ~v~l   82 (103)
T 1v5l_A           79 QLCL   82 (103)
T ss_dssp             EEEC
T ss_pred             eEEE
Confidence            5544

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=2.8e-12  Score=95.96  Aligned_cols=76  Identities=20%  Similarity=0.369  Sum_probs=64.0

Q ss_pred             cceEEEEEEeCCCC-CcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         219 LSMFTVTFQKGPGQ-KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       219 ~~~~~v~l~k~~~~-~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      ..++.|.|.|.... .+|||+|.+..+.  +..|++|..|.+++||+++| |++||+|++|||+++.+++|.+++.+|+.
T Consensus        14 ~~~~~v~l~k~~~~~~~~G~~v~~~~~~--~~~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~   90 (114)
T 2d8i_A           14 KVTQSIHIEKSDTAADTYGFSLSSVEED--GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQ   90 (114)
T ss_dssp             CEEEEEEEECSCTTTCCCCCEEEEEEET--TEEEEEEEECCTTSSHHHHT-CCTTCCEEEESSCBGGGCCHHHHHHHHTS
T ss_pred             CceEEEEEEeCCCCccccCEEEEecCcC--CcCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhC
Confidence            45688999988642 2699999874432  11489999999999999999 99999999999999999999999999985

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=99.33  E-value=3.8e-12  Score=117.13  Aligned_cols=76  Identities=36%  Similarity=0.645  Sum_probs=67.1

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc-C
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI-F  299 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~-~  299 (306)
                      .+.|.|.|+   .+|||++.|+.+     .|+||..|.+||||+++| |++||+|++|||+++.++++++++.+|+.. +
T Consensus         2 ~r~V~l~k~---~~lG~~i~gg~~-----~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~   72 (468)
T 3shw_A            2 MKLVKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPK   72 (468)
T ss_dssp             EEEEEEECC---SSCCEEEEEETT-----TEEEEEEECSSSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCT
T ss_pred             ceEEEEecC---CccceEEEccCc-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCC
Confidence            467888886   579999999876     599999999999999999 999999999999999999999999999986 4


Q ss_pred             CCceec
Q psy8436         300 PQSSKL  305 (306)
Q Consensus       300 ~~~~~l  305 (306)
                      +..+.|
T Consensus        73 g~~v~L   78 (468)
T 3shw_A           73 GEEVTI   78 (468)
T ss_dssp             TSEEEE
T ss_pred             CCEEEE
Confidence            455544

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.33  E-value=2.2e-12  Score=98.66  Aligned_cols=82  Identities=20%  Similarity=0.355  Sum_probs=69.5

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ..++.|.|.++.. .+|||.+.+..+.    .+++|..|.++|+|+++|-|++||+|++|||+++.+++++++..+|+..
T Consensus         7 ~~~~~v~l~~~~~-~glG~~~~~~~~~----~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~   81 (127)
T 1b8q_A            7 PNVISVRLFKRKV-GGLGFLVKERVSK----PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI   81 (127)
T ss_dssp             CCSEEEEEECTTT-SCCSCCEEECTTS----SCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSC
T ss_pred             CceEEEEEEeCCC-CcEeEEEEecCCC----CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            3467889988853 6899999876542    5899999999999999993399999999999999999999999999987


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      +++.+.|
T Consensus        82 ~g~~v~l   88 (127)
T 1b8q_A           82 ASETHVV   88 (127)
T ss_dssp             CSSCEEE
T ss_pred             CCCeEEE
Confidence            6666654

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.33  E-value=8.3e-12  Score=103.14  Aligned_cols=77  Identities=32%  Similarity=0.450  Sum_probs=66.7

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.|.|.+..+ .+|||++.++.+..   .+++|..|.++|||+++|+|++||+|++|||+++.+++|.+++.+|+..
T Consensus         6 ~~~~~v~l~~~~~-~~lG~~i~~~~~~~---~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~   81 (200)
T 2qt5_A            6 KGSTVVELMKKEG-TTLGLTVSGGIDKD---GKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNV   81 (200)
T ss_dssp             EEEEEEEEECCTT-CCCCEEEECCTTSS---SCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTC
T ss_pred             CCCEEEEEEeCCC-CCCCEEEecccCCC---CCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            3467788887764 79999999987653   5799999999999999945999999999999999999999999999865


Q ss_pred             C
Q psy8436         299 F  299 (306)
Q Consensus       299 ~  299 (306)
                      .
T Consensus        82 g   82 (200)
T 2qt5_A           82 G   82 (200)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.33  E-value=7e-12  Score=95.45  Aligned_cols=84  Identities=29%  Similarity=0.492  Sum_probs=66.5

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ..++.+.+.+.....+|||++....+... ..|++|..|.+++||+++|+|++||+|++|||+++.  ++.++..+|+..
T Consensus        18 ~~~~~~~~~~~~~~~~lG~~~~~~~~~~~-~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~--~~~~~~~~l~~~   94 (124)
T 1wh1_A           18 LELEEVDLYRMNSQDKLGLTVCYRTDDED-DIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSE   94 (124)
T ss_dssp             CEECCBCCCCSSTTCCCCEEEECCCCCSS-CCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCS
T ss_pred             ceEEEEEEEecCCCCcccEEEEecCCCCC-CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECC--CHHHHHHHHHhC
Confidence            44555666666544689999987654321 258999999999999999889999999999999997  478999999986


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      ++..+.|
T Consensus        95 ~g~~v~l  101 (124)
T 1wh1_A           95 ENKNFSL  101 (124)
T ss_dssp             SCCSCCE
T ss_pred             CCCEEEE
Confidence            6665554

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=99.32  E-value=9.4e-12  Score=89.70  Aligned_cols=76  Identities=17%  Similarity=0.201  Sum_probs=63.3

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc--
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI--  298 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~--  298 (306)
                      ...+.|.+..  .++||.+....      .+.+|.+|.+++||+++| |++||+|++|||.++...+++|++.+++++  
T Consensus        18 ~~~l~l~~~~--~g~G~~l~~~~------~~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~   88 (101)
T 3qik_A           18 AKRLLILPQE--EDYGFDIEEKN------KAVVVKSVQRGSLAEVAG-LQVGRKIYSINEDLVFLRPFSEVESILNQSFC   88 (101)
T ss_dssp             EEEEEECCCS--SSSSEEEEEET------TEEEEEEECTTSHHHHHT-CCTTCBEEEETTEESTTSCHHHHHHHHHHHHH
T ss_pred             cCeEEEEeCC--CcccEEEEccC------CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEEcCcCCHHHHHHHHHHhhc
Confidence            3466676663  68999997532      478999999999999999 999999999999999888999999999984  


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      .++.+.|
T Consensus        89 ~g~~v~L   95 (101)
T 3qik_A           89 SRRPLRL   95 (101)
T ss_dssp             TTCCEEE
T ss_pred             cCCeEEE
Confidence            5665543

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=99.30  E-value=1.9e-11  Score=87.82  Aligned_cols=73  Identities=30%  Similarity=0.404  Sum_probs=61.2

Q ss_pred             EEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCC
Q psy8436         222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQ  301 (306)
Q Consensus       222 ~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~  301 (306)
                      +.|.+.+......|||.+.         .|++|..|.++|+|+++|+|++||+|++|||.++.++++.++..+|++... 
T Consensus         4 ~~v~~~~~~~~~~~g~~~~---------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-   73 (92)
T 3cyy_A            4 TKVTLVKSAKNEEYGLRLA---------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKG-   73 (92)
T ss_dssp             EEEEEECSSTTSCCCEEEE---------EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTT-
T ss_pred             EEEEEEeCCCCCCCCEEEe---------CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-
Confidence            4566665544468999885         389999999999999998899999999999999999999999999988554 


Q ss_pred             cee
Q psy8436         302 SSK  304 (306)
Q Consensus       302 ~~~  304 (306)
                      .+.
T Consensus        74 ~v~   76 (92)
T 3cyy_A           74 KLK   76 (92)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            443

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=99.30  E-value=9.4e-12  Score=102.36  Aligned_cols=70  Identities=37%  Similarity=0.608  Sum_probs=60.1

Q ss_pred             CcccEEEEcCCCC---CC--CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436         233 KSLGFSIVGGRDS---PK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL  305 (306)
Q Consensus       233 ~~lG~~l~gg~~~---~~--~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l  305 (306)
                      .+|||+|.|+.+.   +.  ...|+||..|.++|||++ | |++||+|++|||+++.+++|.+++.+|+.... .+.|
T Consensus         2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~-~v~l   76 (195)
T 2qbw_A            2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQN-TVEL   76 (195)
T ss_dssp             CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCS-EEEE
T ss_pred             CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-eEEE
Confidence            5799999998752   21  346999999999999999 7 99999999999999999999999999998764 4443

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=99.29  E-value=9.5e-12  Score=112.86  Aligned_cols=77  Identities=36%  Similarity=0.618  Sum_probs=67.2

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh-c
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD-I  298 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~-~  298 (306)
                      ..+.|.+.++.   +|||++.++.+     .|+||..|.+||||+++| |++||+|++|||+++.++++++++.+|+. .
T Consensus         9 ~~~~v~~~k~~---~lG~~i~gg~~-----~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~   79 (391)
T 3tsz_A            9 SMKLVKFRKGD---SVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLP   79 (391)
T ss_dssp             CEEEEEEECCS---SCCEEEEEETT-----TEEEEEEECTTCHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred             CcEEEEeecCC---ceeEEEEecCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhhc
Confidence            45678888873   69999998775     599999999999999999 99999999999999999999999999998 4


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      ++..+.|
T Consensus        80 ~g~~v~l   86 (391)
T 3tsz_A           80 KGEEVTI   86 (391)
T ss_dssp             TTSEEEE
T ss_pred             CCCeEEE
Confidence            5555554

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=99.26  E-value=2.3e-11  Score=87.11  Aligned_cols=76  Identities=25%  Similarity=0.327  Sum_probs=60.7

Q ss_pred             EEEEEEeCCC-CCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc-C
Q psy8436         222 FTVTFQKGPG-QKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI-F  299 (306)
Q Consensus       222 ~~v~l~k~~~-~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~-~  299 (306)
                      ..+.+.+.++ ...|||++....      .|++|..|.+++||+++| |++||+|++|||+++.+.++.++..+|+.. +
T Consensus         5 ~~~~~~~~~~~~~~lG~~~~~~~------~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   77 (90)
T 2eaq_A            5 MRISINQTPGKSLDFGFTIKWDI------PGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQE   77 (90)
T ss_dssp             EEEEEECCTTCSSCCSEEEEEET------TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECCTTCHHHHHHHHHHHHH
T ss_pred             eEEEEEecCCCCCcccEEEEecC------CCEEEEEECCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHHHhcCC
Confidence            4566666543 236999987432      489999999999999998 999999999999999888899999999864 3


Q ss_pred             CCcee
Q psy8436         300 PQSSK  304 (306)
Q Consensus       300 ~~~~~  304 (306)
                      +..+.
T Consensus        78 g~~v~   82 (90)
T 2eaq_A           78 TGHLV   82 (90)
T ss_dssp             HTEEE
T ss_pred             CCEEE
Confidence            44443

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.26  E-value=3.5e-11  Score=92.11  Aligned_cols=75  Identities=32%  Similarity=0.542  Sum_probs=62.7

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+++.+..... ..|||.+.++.+.   ..|++|..|.+++||+++| |++||+|++|||+++.++++.+++..++..
T Consensus        19 g~~~~v~v~~~~~-~~lG~~~~~~~~~---~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   93 (128)
T 1uf1_A           19 GDEKKVNLVLGDG-RSLGLTIRGGAEY---GLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS   93 (128)
T ss_dssp             SSEEEEEEECCSS-CCCCEEEECCTTT---TCCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTC
T ss_pred             CcEEEEEEEECCC-CccCEEEECcccC---CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            3456677765542 5799999886543   2589999999999999999 999999999999999999999999998874

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.26  E-value=4.6e-11  Score=83.56  Aligned_cols=64  Identities=30%  Similarity=0.438  Sum_probs=56.0

Q ss_pred             CCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436         232 QKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL  305 (306)
Q Consensus       232 ~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l  305 (306)
                      ...|||.+.         .|++|..|.++|+|+++|.|++||+|++|||.++.++++.++..+|++... .+.|
T Consensus        12 ~~~~g~~~~---------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l   75 (81)
T 2rcz_A           12 NEEYGLRLA---------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKG-KLKM   75 (81)
T ss_dssp             TCCCCEEEE---------EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTT-EEEE
T ss_pred             CCCCCEEEe---------CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-eEEE
Confidence            367999886         379999999999999998899999999999999999999999999998654 4443

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.25  E-value=1.3e-11  Score=102.77  Aligned_cols=77  Identities=26%  Similarity=0.495  Sum_probs=67.0

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.|.|.+..  .+|||.+.++.+.    .|++|..|.++++|+++| |++||+|++|||+++.++++.+++.+|+..
T Consensus         8 ~~~r~v~l~k~~--~glG~~l~~~~~~----~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s~~dl~~~l~~~   80 (216)
T 2krg_A            8 LRPRLCTMKKGP--SGYGFNLHSDKSK----PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAG   80 (216)
T ss_dssp             CCCEEEEEECCS--SSSCEEECCCSSS----CSCBEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCTHHHHHHHHHH
T ss_pred             cceEEEEEEeCC--CCceEEEEecCCC----CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            446788998885  6899999877643    489999999999999999 999999999999999999999999999887


Q ss_pred             CCCce
Q psy8436         299 FPQSS  303 (306)
Q Consensus       299 ~~~~~  303 (306)
                       +..+
T Consensus        81 -g~~v   84 (216)
T 2krg_A           81 -GDET   84 (216)
T ss_dssp             -CSEE
T ss_pred             -CCeE
Confidence             4444

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.24  E-value=3.5e-11  Score=96.33  Aligned_cols=78  Identities=23%  Similarity=0.314  Sum_probs=67.1

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      .++.|.|.|.. ...|||++....      .|++|..|.+++||+++| |++||+|++|||+++.+++++.+..+++..+
T Consensus         4 ~~r~v~l~k~~-~~~lG~~~~~~~------~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~~   75 (166)
T 1w9e_A            4 DPREVILCKDQ-DGKIGLRLKSID------NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAF   75 (166)
T ss_dssp             CCEEEEEECCT-TSCCSEEEEEET------TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             CCEEEEEEeCC-CCcEeEEEEeCC------CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            45789999975 368999998643      589999999999999998 9999999999999999999878888888877


Q ss_pred             CCceec
Q psy8436         300 PQSSKL  305 (306)
Q Consensus       300 ~~~~~l  305 (306)
                      +..+.|
T Consensus        76 ~~~v~l   81 (166)
T 1w9e_A           76 GEKITM   81 (166)
T ss_dssp             SSEEEE
T ss_pred             CCEEEE
Confidence            766654

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=99.12  E-value=2.8e-11  Score=109.86  Aligned_cols=84  Identities=25%  Similarity=0.332  Sum_probs=67.7

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      ..+.|.+.|.++ ++|||+|.+..... ...+++|..|.++|||+++|+|++||+|++|||+++.+++|.+++.+|+..+
T Consensus       204 ~~~~V~i~k~~g-e~lG~~i~~~~~g~-~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~  281 (388)
T 3suz_A          204 NCKELQLEKHKG-EILGVVVVESGWGS-ILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLK  281 (388)
T ss_dssp             CCEEEEECCCSS-CCCCCCCBCC---C-CSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCT
T ss_pred             cceEEEEECCCC-CceeEEEEecCCCC-cCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhcc
Confidence            456889988765 78999998743211 1236899999999999999999999999999999999999999999999884


Q ss_pred             C-Cceec
Q psy8436         300 P-QSSKL  305 (306)
Q Consensus       300 ~-~~~~l  305 (306)
                      . ..+.|
T Consensus       282 ~~~~v~l  288 (388)
T 3suz_A          282 NQTQVKL  288 (388)
T ss_dssp             TCSCEEE
T ss_pred             CCCcccc
Confidence            4 33443

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.10  E-value=2.1e-10  Score=86.28  Aligned_cols=71  Identities=25%  Similarity=0.333  Sum_probs=55.6

Q ss_pred             CcccEEEEcCCCCCCCCCcEEEEEEcC--CChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436         233 KSLGFSIVGGRDSPKGNLGIFVKTIFQ--SGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL  305 (306)
Q Consensus       233 ~~lG~~l~gg~~~~~~~~gi~V~~V~~--~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l  305 (306)
                      +.+||.+....+......|++|..|.+  ++||+++| |++||+|++|||.++.+++|+++..+|+.. +..+.|
T Consensus        27 g~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~~v~~~~~~dl~~~l~~~-g~~v~l   99 (118)
T 2yub_A           27 CRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNA-IHPGDRILEINGTPVRTLRVEEVEDAIKQT-SQTLQL   99 (118)
T ss_dssp             SSCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSSBTTTSCHHHHHHHHHCC-SSCEEE
T ss_pred             CCceEEEEeccccccCCCcEEEEEecCCCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHhC-CCEEEE
Confidence            346666652221111125899999999  99999998 999999999999999999999999999987 555544

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.99  E-value=3e-10  Score=81.35  Aligned_cols=58  Identities=17%  Similarity=0.285  Sum_probs=51.4

Q ss_pred             CeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEEEEEeCCCC
Q psy8436          33 PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEIVICRNPDD   94 (306)
Q Consensus        33 gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L~v~r~~~~   94 (306)
                      |++|..|.++|||++ | |+.||+|++|||+.+.  ++.+...+|+..  ++.|.|+|.|+...
T Consensus         2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~   61 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-K-IEVGDKIISADGKNYQ--SAEKLIDYISSKKAGDKVTLKIEREEKE   61 (91)
T ss_dssp             CSSCCCCCCSSCCSS-C-CCSSCEEEEETTBCCS--SHHHHHHHHSSCCSSCEECEEEESSSCE
T ss_pred             ceEEEEECCCChHHH-c-CCCCCEEEEECCEECC--CHHHHHHHHHcCCCCCEEEEEEEECCEE
Confidence            688999999999999 8 9999999999999998  467888888875  77899999997643

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.95  E-value=4.2e-09  Score=76.73  Aligned_cols=58  Identities=16%  Similarity=0.229  Sum_probs=50.6

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L~v~r~~~   93 (306)
                      .|++|..|.++|||++ | |+.||+|++|||+.+.  ++.+...+|...  +..+.|+|.|...
T Consensus         7 ~Gv~V~~V~~~spA~~-G-L~~GD~I~~Ing~~v~--~~~dl~~~l~~~~~g~~v~l~v~R~g~   66 (100)
T 3i18_A            7 DGVYVMSVKDDVPAAD-V-LHAGDLITEIDGNAFK--SSQEFIDYIHSKKVGDTVKINYKHGDK   66 (100)
T ss_dssp             CCEEEEEECTTSGGGG-T-CCTTCEEEEETTBCCS--SHHHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred             CCEEEEEeCCCCchHH-C-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            5899999999999995 8 9999999999999998  567888888763  6789999999754

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.92  E-value=2e-09  Score=77.50  Aligned_cols=58  Identities=10%  Similarity=0.244  Sum_probs=51.3

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L~v~r~~~   93 (306)
                      .|++|..|.++|||++ | |+.||+|++|||+.+.+  ..+...+|+..  ++.+.|+|.|+..
T Consensus         5 ~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~   64 (94)
T 2kl1_A            5 KGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQPINT--SEQIVSYVREKQAGDRVRVTFIRDRK   64 (94)
T ss_dssp             CCEECCCCCTTSTTBT-T-BCTTCEEEEETTBCCCC--HHHHHHHHHHSCTTCCEEEEEEETTE
T ss_pred             CcEEEEEECCCChHHh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            5799999999999998 8 99999999999999984  67888888764  7799999999754

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.90  E-value=3.8e-09  Score=74.86  Aligned_cols=71  Identities=13%  Similarity=0.136  Sum_probs=55.0

Q ss_pred             ceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEEEEEeCC
Q psy8436          17 ELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEIVICRNP   92 (306)
Q Consensus        17 ~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L~v~r~~   92 (306)
                      .+|+......  +...|+.|..+.|+|||+++| |+.||+|++|||+.+.  ++.+...+++..  +..+.|+|.|+.
T Consensus         6 ~~~~~p~~~~--g~~~G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~~v~--~~~d~~~~~~~~~~g~~v~l~v~R~g   78 (87)
T 2i6v_A            6 YVRLSQVKRD--DKVLGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDG   78 (87)
T ss_dssp             TEEEEEEEET--TEEEEEEEEECSCHHHHHHTT-CCTTCEEEEETTEETT--CHHHHHHHHHTGGGCSEEEEEEEETT
T ss_pred             ccceEEEeeC--CeEEEEEEEeCCCCCHHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            3555554332  223478899999999999999 9999999999999998  456777777653  678999999875

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=98.90  E-value=4.7e-09  Score=78.26  Aligned_cols=58  Identities=22%  Similarity=0.456  Sum_probs=52.3

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~   93 (306)
                      .|++|..|.++|||+++| |+.||+|++|||+.+.  +..+...+++. ++.+.|+|.|+..
T Consensus        35 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~-~~~v~l~v~R~g~   92 (113)
T 2pzd_A           35 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRT-QSQLAVQIRRGRE   92 (113)
T ss_dssp             SCEEEEEEBTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHHH-CSSEEEEEEETTE
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHhC-CCeEEEEEEECCE
Confidence            689999999999999999 9999999999999998  57888888887 5789999999753

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=98.85  E-value=1.2e-08  Score=78.55  Aligned_cols=74  Identities=20%  Similarity=0.280  Sum_probs=58.6

Q ss_pred             CceeEEEEecCC---------C---CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--C
Q psy8436          16 NELGIYIERQDG---------G---AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--D   81 (306)
Q Consensus        16 ~~lG~~i~gg~~---------~---~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~   81 (306)
                      ..||+.+..-..         +   ....|++|..|.++|||+ +| |+.||+|++|||+.+.+  +.+...++...  +
T Consensus        29 ~~LGv~~~~~~~~~~~~~~~lgl~~~~~~g~~V~~V~~~spA~-aG-L~~GD~I~~inG~~v~~--~~~l~~~l~~~~~g  104 (134)
T 2l97_A           29 PALGIQMVNLSNVSTSDIRRLNIPSNVTSGVIVRSVQSNMPAN-GH-LEKYDVITKVDDKEIAS--STDLQSALYNHSIG  104 (134)
T ss_dssp             CCCCCEEEESSSSCHHHHHHHSSCSSSCSCEEEEECSTTSGGG-TT-SCSSCEEEEETTEECCC--HHHHHHHHHHSSTT
T ss_pred             eEeeEEEEECCchhHHHHHHcCCCcCCCCCEEEEEECCCCchH-HC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCC
Confidence            468888765322         0   013689999999999999 99 99999999999999984  56777777664  7


Q ss_pred             CeEEEEEEeCCC
Q psy8436          82 SHVEIVICRNPD   93 (306)
Q Consensus        82 ~~v~L~v~r~~~   93 (306)
                      +.+.|+|.|+..
T Consensus       105 ~~v~l~v~R~g~  116 (134)
T 2l97_A          105 DTIKITYYRNGK  116 (134)
T ss_dssp             CEEEEEEEETTE
T ss_pred             CEEEEEEEECCE
Confidence            899999999754

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.83  E-value=9.6e-09  Score=74.05  Aligned_cols=57  Identities=16%  Similarity=0.161  Sum_probs=49.0

Q ss_pred             eEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-C-CeEEEEEEeCCC
Q psy8436          34 YLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-D-SHVEIVICRNPD   93 (306)
Q Consensus        34 i~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~-~~v~L~v~r~~~   93 (306)
                      -+|..|.++|||+++| |+.||+|++|||+.+.  ++.++...|... + ..+.|+|.|...
T Consensus         4 p~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~d~~~~l~~~~~~~~v~l~v~R~g~   62 (95)
T 3id1_A            4 PVVGEIAANSIAAEAQ-IAPGTELKAVDGIETP--DWDAVRLQLVDKIGDESTTITVAPFGS   62 (95)
T ss_dssp             CBEEEECTTSHHHHTT-CCTTCEEEEETTEECS--SHHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred             CEEEeeCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHHhcCCCcEEEEEEECCC
Confidence            4688999999999999 9999999999999998  567888777654 3 589999999763

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=98.81  E-value=1.1e-08  Score=76.00  Aligned_cols=58  Identities=28%  Similarity=0.434  Sum_probs=50.9

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~   93 (306)
                      .|++|..|.++|||+++| |+.||+|++|||+.+.  +..+....++ .+..+.|+|.|+..
T Consensus        35 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~-~g~~v~l~v~R~g~   92 (112)
T 2p3w_A           35 SGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLV--DSSELQEAVL-TESPLLLEVRRGND   92 (112)
T ss_dssp             SSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHH-HCSSEEEEEEETTE
T ss_pred             CCeEEEEECCCChHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHh-CCCeEEEEEEECCE
Confidence            589999999999999999 9999999999999998  5677777775 46789999998753

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.78  E-value=2.8e-08  Score=90.20  Aligned_cols=74  Identities=24%  Similarity=0.507  Sum_probs=63.8

Q ss_pred             CceeEEEEec-CCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeEEEEEEeCCC
Q psy8436          16 NELGIYIERQ-DGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-DSHVEIVICRNPD   93 (306)
Q Consensus        16 ~~lG~~i~gg-~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~v~L~v~r~~~   93 (306)
                      .++|+.+... ...   .+++|..|.++|||+++| |+.||+|++|||+++.+++..++..+|+.. +..|.|+|.|...
T Consensus        85 ~giG~~~~~~~~~~---~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~  160 (388)
T 1fc6_A           85 TGVGLEITYDGGSG---KDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA  160 (388)
T ss_dssp             BBCSEEEEECTTCS---SCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             EEEEEEEEEeecCC---CcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence            4789998754 211   479999999999999999 999999999999999999989999999864 6789999998764

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.77  E-value=1.2e-08  Score=72.91  Aligned_cols=57  Identities=16%  Similarity=0.334  Sum_probs=49.4

Q ss_pred             eEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeEEEEEEeCCC
Q psy8436          34 YLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-DSHVEIVICRNPD   93 (306)
Q Consensus        34 i~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~v~L~v~r~~~   93 (306)
                      ++|..|.++|||+++| |+.||+|++|||+.+.  ++.+....|+.. +..+.|+|.|+..
T Consensus         6 ~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~~~g~~v~l~v~R~g~   63 (91)
T 2zpm_A            6 PVLENVQPNSAASXAG-LQAGDRIVXVDGQPLT--QWVTFVMLVRDNPGXSLALEIERQGS   63 (91)
T ss_dssp             CBCSEECTTSHHHHTT-CCTTCEEEEETTEECC--CHHHHHHHHHHCTTCCEEEEEEETTE
T ss_pred             eEEEEECCCChHHhcC-CCCCCEEEEECCeEcC--CHHHHHHHHhcCCCCeEEEEEEECCe
Confidence            6788999999999999 9999999999999998  567888777754 6689999998753

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.71  E-value=5.7e-08  Score=71.32  Aligned_cols=58  Identities=14%  Similarity=0.157  Sum_probs=47.5

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEEEEEeCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEIVICRNP   92 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L~v~r~~   92 (306)
                      .|++|..+.|++||+++| |+.||+|++|||+.+.++.  +...+++.  .++.+.|+|.|+.
T Consensus        37 ~G~~V~~~~pas~A~~aG-l~~GDvI~~ing~~v~~~~--d~~~~~~~~~~g~~v~l~v~R~g   96 (105)
T 2i4s_A           37 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSLTVERDG   96 (105)
T ss_dssp             EEEEEEECSCTHHHHHHT-CCTTCEEEEETTEETTSTT--HHHHHHHHHTTCSEEEEEEEETT
T ss_pred             EEEEEecCCCCCHHHHcC-CCCCCEEEEECCEECCCHH--HHHHHHHhcCCCCeEEEEEEECC
Confidence            467788888888999999 9999999999999999764  44455553  4678999999875

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=98.65  E-value=3.3e-08  Score=89.76  Aligned_cols=75  Identities=16%  Similarity=0.205  Sum_probs=59.3

Q ss_pred             CCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCC
Q psy8436          15 SNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD   93 (306)
Q Consensus        15 ~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~   93 (306)
                      ..||||.+.....+...-.++|..|.++|||+++| |+.||+|++|||+++.++.   +..+++..+..|+|+|.|...
T Consensus        73 ~~G~~~~l~~~~~~~~~~~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l~v~R~g~  147 (403)
T 3k50_A           73 SYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQIGVYKEVV  147 (403)
T ss_dssp             BCSEEEEEEECTTCSSCEEEEEEEECTTSHHHHTT-CCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEEEEEEEEC
T ss_pred             ccceEEEEEEcCCCCcceeEEEEEeCCCChHHHcC-CCCCCEEEEECCEEccchh---HHHHhhCCCCEEEEEEEeCCc
Confidence            45788887765433211137899999999999999 9999999999999999885   566677767789999998754

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=98.65  E-value=1.3e-07  Score=83.76  Aligned_cols=71  Identities=18%  Similarity=0.281  Sum_probs=57.4

Q ss_pred             ceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEEEEEe-CCC
Q psy8436          17 ELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEIVICR-NPD   93 (306)
Q Consensus        17 ~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L~v~r-~~~   93 (306)
                      .||+.+.....   ..|++|..|.+++||+++| |+.||+|++|||+.+.  ++.+...+++.  .++.|.|+|.| +..
T Consensus       230 ~lGi~~~~~~~---~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~~g~  303 (324)
T 1y8t_A          230 SLGVQVTNDKD---TLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPIN--SADALVAAVRSKAPGATVALTFQDPSGG  303 (324)
T ss_dssp             ECCEEEESCSS---SSSEEEEEECTTSTTTTTT-CCTTCEEEEETTEECC--SHHHHHHHHHTSCTTCEEEEEEECSSCC
T ss_pred             ccceEeeeccC---CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCCC
Confidence            56776653221   2589999999999999999 9999999999999998  45677777765  47889999999 653

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.64  E-value=7e-08  Score=79.98  Aligned_cols=73  Identities=11%  Similarity=0.171  Sum_probs=57.5

Q ss_pred             CceeEEEEecCCC-CcCCCeEEEEeCCCChhcccCCCCC-CCEEEEECCEeCCCCCHHHHHHHHhcC-CCeEEEEEEeCC
Q psy8436          16 NELGIYIERQDGG-AHFSPYLISHIEPGGAIHRDGRFHV-GDELIKVNDKRLKGLTIQEAREALNNK-DSHVEIVICRNP   92 (306)
Q Consensus        16 ~~lG~~i~gg~~~-~~~~gi~V~~V~~gs~A~~~G~L~~-GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~v~L~v~r~~   92 (306)
                      ..|||++..-... ....|++|..|.++|||+++| |+. ||+|++|||+ +.+  +++...+++.. +..+.|+|.|..
T Consensus        95 ~~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~~GD~I~~ing~-v~~--~~~l~~~l~~~~g~~v~l~v~r~~  170 (209)
T 3rle_A           95 GLLGVSIRFCSFDGANENVWHVLEVESNSPAALAG-LRPHSDYIIGADTV-MNE--SEDLFSLIETHEAKPLKLYVYNTD  170 (209)
T ss_dssp             SSSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHT-CCTTTEEEEEESSC-CCS--SSCHHHHHHHTTTSCEEEEEEETT
T ss_pred             CccceEEeecChhHccccceEEEEeCCCChHHHCC-CCCCCCEEEECCCE-eCC--HHHHHHHHHhCCCCeEEEEEEECC
Confidence            4689988753211 112589999999999999999 999 9999999998 764  46777777775 678999998864

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=98.61  E-value=1.5e-07  Score=71.28  Aligned_cols=57  Identities=14%  Similarity=0.183  Sum_probs=49.3

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L~v~r~~~   93 (306)
                      .|++|..|.+++||+++  |+.||+|++|||+.+.  ++.+...+++.  .++.+.|+| |+..
T Consensus        25 ~gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~--~~~dl~~~l~~~~~g~~v~l~V-R~g~   83 (125)
T 2hga_A           25 DGVQIDSVVPGSPASKV--LTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITT-DQGT   83 (125)
T ss_dssp             CCEEEEEECSSSGGGGT--SCTTCEEEEETTEECS--SHHHHHHHHTTCCTTCEEEEEE-TTEE
T ss_pred             CceEEEEECCCChHHHh--cCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEE-ECCE
Confidence            57999999999999988  9999999999999998  56788888874  477899999 7653

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=98.60  E-value=6.7e-08  Score=85.35  Aligned_cols=76  Identities=18%  Similarity=0.316  Sum_probs=60.2

Q ss_pred             CceeEEEEecCCC-------CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEE
Q psy8436          16 NELGIYIERQDGG-------AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEI   86 (306)
Q Consensus        16 ~~lG~~i~gg~~~-------~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L   86 (306)
                      ..||+.+..-...       ....|++|..|.++|||+++| |+.||+|++|||+.+.  +..+...+|+.  .++.|.|
T Consensus       221 ~~lGi~~~~~~~~~~~~~g~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~--~~~~l~~~l~~~~~g~~v~l  297 (318)
T 1te0_A          221 GYIGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAI--SALETMDQVAEIRPGSVIPV  297 (318)
T ss_dssp             EECCEEEEECSCCCSSSSCSSSCCCEEEEEECTTSTTTTTC-CCTTCCEEEETTEECC--CHHHHHHHHHTSCTTCEEEE
T ss_pred             ccceeEeeecchhHHHhccCCCCCcEEEEEeCCCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEE
Confidence            3577777542110       112589999999999999999 9999999999999998  46788888875  4779999


Q ss_pred             EEEeCCCC
Q psy8436          87 VICRNPDD   94 (306)
Q Consensus        87 ~v~r~~~~   94 (306)
                      +|.|+...
T Consensus       298 ~v~R~g~~  305 (318)
T 1te0_A          298 VVMRDDKQ  305 (318)
T ss_dssp             EEESSSCE
T ss_pred             EEEECCEE
Confidence            99997643

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.60  E-value=1.3e-08  Score=72.71  Aligned_cols=51  Identities=20%  Similarity=0.362  Sum_probs=43.6

Q ss_pred             cEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc-CCCceec
Q psy8436         251 GIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI-FPQSSKL  305 (306)
Q Consensus       251 gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~-~~~~~~l  305 (306)
                      |++|..|.++|||++ | |++||+|++|||.++.+  ..++..+|+.. ++..+.|
T Consensus         2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~~v~~--~~~l~~~l~~~~~g~~v~l   53 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-K-IEVGDKIISADGKNYQS--AEKLIDYISSKKAGDKVTL   53 (91)
T ss_dssp             CSSCCCCCCSSCCSS-C-CCSSCEEEEETTBCCSS--HHHHHHHHSSCCSSCEECE
T ss_pred             ceEEEEECCCChHHH-c-CCCCCEEEEECCEECCC--HHHHHHHHHcCCCCCEEEE
Confidence            678999999999998 8 99999999999999975  57999999887 4555544

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=98.57  E-value=1.3e-07  Score=84.32  Aligned_cols=60  Identities=23%  Similarity=0.422  Sum_probs=53.5

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEEEEEeCCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEIVICRNPDD   94 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L~v~r~~~~   94 (306)
                      .|++|..|.++|||+++| |+.||+|++|||+.+.  +..+...+++.  .++.|.|+|.|+...
T Consensus       263 ~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~  324 (345)
T 3stj_A          263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGKP  324 (345)
T ss_dssp             SSEEEEEECTTSHHHHHT-CCTTCEECEETTEECS--CHHHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred             ceEEEEEeccCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            589999999999999999 9999999999999998  56788888876  478999999997643

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.56  E-value=1.5e-07  Score=68.36  Aligned_cols=52  Identities=25%  Similarity=0.382  Sum_probs=43.4

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc-CCCceec
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI-FPQSSKL  305 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~-~~~~~~l  305 (306)
                      .|++|..|.+++||++ | |++||+|++|||+++.+  ..++..+|... +++.+.|
T Consensus         7 ~Gv~V~~V~~~spA~~-G-L~~GD~I~~Ing~~v~~--~~dl~~~l~~~~~g~~v~l   59 (100)
T 3i18_A            7 DGVYVMSVKDDVPAAD-V-LHAGDLITEIDGNAFKS--SQEFIDYIHSKKVGDTVKI   59 (100)
T ss_dssp             CCEEEEEECTTSGGGG-T-CCTTCEEEEETTBCCSS--HHHHHHHHHTSCTTCEEEE
T ss_pred             CCEEEEEeCCCCchHH-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEE
Confidence            5899999999999995 6 99999999999999975  57888888875 3454443

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.55  E-value=1.7e-07  Score=85.01  Aligned_cols=68  Identities=16%  Similarity=0.278  Sum_probs=57.5

Q ss_pred             CcccEEEEcC-CCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436         233 KSLGFSIVGG-RDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL  305 (306)
Q Consensus       233 ~~lG~~l~gg-~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l  305 (306)
                      .++|+.+... .+    ..+++|..|.+++||+++| |++||+|++|||+++.+++..+++.+|+..++..+.|
T Consensus        85 ~giG~~~~~~~~~----~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l  153 (388)
T 1fc6_A           85 TGVGLEITYDGGS----GKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEV  153 (388)
T ss_dssp             BBCSEEEEECTTC----SSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEE
T ss_pred             EEEEEEEEEeecC----CCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEE
Confidence            5789988643 11    1489999999999999998 9999999999999999999999999998766666554

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=98.54  E-value=1.9e-07  Score=69.45  Aligned_cols=45  Identities=22%  Similarity=0.407  Sum_probs=41.3

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      .|++|..|.++|||+++| |++||.|++|||+++.+  ..++..+|+.
T Consensus        35 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~   79 (113)
T 2pzd_A           35 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN--AEDVYEAVRT   79 (113)
T ss_dssp             SCEEEEEEBTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHHH
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHhC
Confidence            589999999999999999 99999999999999974  6788888876

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.53  E-value=8.7e-08  Score=68.29  Aligned_cols=52  Identities=21%  Similarity=0.360  Sum_probs=43.9

Q ss_pred             cEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436         251 GIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL  305 (306)
Q Consensus       251 gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l  305 (306)
                      +++|..|.++++|+++| |++||+|++|||..+.+  +.++..+|+..+++.+.|
T Consensus         5 ~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v~l   56 (91)
T 2zpm_A            5 EPVLENVQPNSAASXAG-LQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXSLAL   56 (91)
T ss_dssp             -CBCSEECTTSHHHHTT-CCTTCEEEEETTEECCC--HHHHHHHHHHCTTCCEEE
T ss_pred             CeEEEEECCCChHHhcC-CCCCCEEEEECCeEcCC--HHHHHHHHhcCCCCeEEE
Confidence            46789999999999998 99999999999999975  579998998776665544

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.53  E-value=7.6e-08  Score=69.12  Aligned_cols=52  Identities=23%  Similarity=0.487  Sum_probs=44.5

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc-CCCceec
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI-FPQSSKL  305 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~-~~~~~~l  305 (306)
                      .|++|..|.++|||++ | |++||+|++|||.++.+  ..++..+|+.. ++..+.|
T Consensus         5 ~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~~v~~--~~~l~~~l~~~~~g~~v~l   57 (94)
T 2kl1_A            5 KGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQPINT--SEQIVSYVREKQAGDRVRV   57 (94)
T ss_dssp             CCEECCCCCTTSTTBT-T-BCTTCEEEEETTBCCCC--HHHHHHHHHHSCTTCCEEE
T ss_pred             CcEEEEEECCCChHHh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEE
Confidence            5899999999999998 7 99999999999999975  57888899887 4555544

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.53  E-value=1.5e-07  Score=67.63  Aligned_cols=51  Identities=22%  Similarity=0.298  Sum_probs=42.5

Q ss_pred             EEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC-Cceec
Q psy8436         252 IFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP-QSSKL  305 (306)
Q Consensus       252 i~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~-~~~~l  305 (306)
                      .+|.+|.+++||+++| |++||+|++|||+.+.+  +.++...|..... +.+.|
T Consensus         4 p~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~d~~~~l~~~~~~~~v~l   55 (95)
T 3id1_A            4 PVVGEIAANSIAAEAQ-IAPGTELKAVDGIETPD--WDAVRLQLVDKIGDESTTI   55 (95)
T ss_dssp             CBEEEECTTSHHHHTT-CCTTCEEEEETTEECSS--HHHHHHHHHHTTTCSEEEE
T ss_pred             CEEEeeCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHHhcCCCcEEE
Confidence            4689999999999998 99999999999999975  5788888877654 44443

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.52  E-value=2.1e-07  Score=85.67  Aligned_cols=60  Identities=25%  Similarity=0.414  Sum_probs=54.8

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDD   94 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~~   94 (306)
                      .|++|..|.++|||+++| |+.||+|++|||+.+.  ++++..++++..+..+.|+|.|+...
T Consensus       363 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~~  422 (436)
T 4a8c_A          363 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVRGNES  422 (436)
T ss_pred             CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCeEEEEEEECCEE
Confidence            489999999999999999 9999999999999998  57899999998878999999997643

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.52  E-value=9.2e-08  Score=67.64  Aligned_cols=53  Identities=23%  Similarity=0.261  Sum_probs=42.7

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC-CCceec
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF-PQSSKL  305 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~-~~~~~l  305 (306)
                      .|+.|..+.++++|+++| |++||.|++|||.++.+  +.++..+++..+ ++.+.|
T Consensus        19 ~G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~~v~~--~~d~~~~~~~~~~g~~v~l   72 (87)
T 2i6v_A           19 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTD--PNVMNTLFQSMNEMTEMSL   72 (87)
T ss_dssp             EEEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTC--HHHHHHHHHTGGGCSEEEE
T ss_pred             EEEEEEeCCCCCHHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEE
Confidence            378888988988999998 99999999999999975  467778887653 444443

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=98.48  E-value=3.3e-07  Score=81.13  Aligned_cols=58  Identities=22%  Similarity=0.456  Sum_probs=52.5

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~   93 (306)
                      .|++|..|.++|||+++| |+.||+|++|||+.+.  +.++...+|+. ++.+.|+|.|+..
T Consensus       256 ~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~--~~~~l~~~l~~-~~~v~l~v~R~g~  313 (325)
T 1lcy_A          256 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRT-QSQLAVQIRRGRE  313 (325)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHTT-CSSEEEEEEETTE
T ss_pred             CCeEEEEeCcCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHhC-CCeEEEEEEECCE
Confidence            589999999999999999 9999999999999998  56888888877 5789999999764

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=98.47  E-value=2.3e-07  Score=71.23  Aligned_cols=52  Identities=13%  Similarity=0.243  Sum_probs=44.0

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc-CCCceec
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI-FPQSSKL  305 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~-~~~~~~l  305 (306)
                      .|++|..|.++|||+ +| |++||+|++|||.++.+  ..+...+|+.. ++..+.|
T Consensus        57 ~g~~V~~V~~~spA~-aG-L~~GD~I~~inG~~v~~--~~~l~~~l~~~~~g~~v~l  109 (134)
T 2l97_A           57 SGVIVRSVQSNMPAN-GH-LEKYDVITKVDDKEIAS--STDLQSALYNHSIGDTIKI  109 (134)
T ss_dssp             SCEEEEECSTTSGGG-TT-SCSSCEEEEETTEECCC--HHHHHHHHHHSSTTCEEEE
T ss_pred             CCEEEEEECCCCchH-HC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCCCEEEE
Confidence            589999999999999 88 99999999999999976  46888888876 4555544

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.47  E-value=2.4e-07  Score=85.57  Aligned_cols=59  Identities=19%  Similarity=0.285  Sum_probs=54.1

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~   93 (306)
                      .|++|..|.++|||+++| |+.||+|++|||+.+.  +.++...+|+..+..+.|+|.|...
T Consensus       386 ~Gv~V~~V~~gspA~~aG-L~~GD~I~~Vng~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~  444 (451)
T 3pv2_A          386 IGVQVVGASENSAGWRAG-IRPGDIIISANKKPVT--DVKSLQTIAQEKKKELLVQVLRGPG  444 (451)
T ss_dssp             EEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHTTSSCSCEEEEEEETTE
T ss_pred             CceEEEEECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHhcCCCeEEEEEEECCE
Confidence            479999999999999999 9999999999999998  5689999999988899999999753

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=98.45  E-value=2.5e-07  Score=82.67  Aligned_cols=60  Identities=20%  Similarity=0.354  Sum_probs=52.6

Q ss_pred             CCeEEEEeCCCChhcccCCCCC-----------CCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEEEEEeCCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHV-----------GDELIKVNDKRLKGLTIQEAREALNN--KDSHVEIVICRNPDD   94 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~-----------GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L~v~r~~~~   94 (306)
                      .|++|..|.++|||+++| |+.           ||+|++|||+.+.++  ++...+|..  .++.|+|+|.|+...
T Consensus       251 ~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~~  323 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKVGDEVTVEVLRGDHK  323 (348)
T ss_dssp             SSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTTCCTTCEEEEEEECSSSE
T ss_pred             ceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHhCCCcCEEEEEEEECCEE
Confidence            689999999999999999 999           999999999999955  677778854  378999999997653

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=98.44  E-value=4e-07  Score=86.82  Aligned_cols=71  Identities=14%  Similarity=0.213  Sum_probs=57.1

Q ss_pred             CCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEEEEEeCC
Q psy8436          15 SNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEIVICRNP   92 (306)
Q Consensus        15 ~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L~v~r~~   92 (306)
                      ..+||+.+....     .|++|..|.++|||+++| |++||+|++|||+.+..   .+...+|+.  .++.|.|+|.|+.
T Consensus       484 ~~~lG~~~~~~~-----~gv~V~~V~~~spA~~AG-L~~GD~I~aInG~~v~~---~~l~~~l~~~~~g~~v~l~v~R~g  554 (597)
T 4fgm_A          484 RVNFGAKYKASP-----QGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATE---QSVKRILERYIPGDTVTIHAFRRD  554 (597)
T ss_dssp             SCCCSEEEEEET-----TEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCT---TTHHHHHTTCCTTCEEEEEEEETT
T ss_pred             ccccceEEeccC-----CeEEEEEeCCCChHHHCC-CCCCCEEEEECCEECCH---HHHHHHHHhcCCCCEEEEEEEECC
Confidence            347899886542     369999999999999999 99999999999999953   345555654  4789999999976


Q ss_pred             CC
Q psy8436          93 DD   94 (306)
Q Consensus        93 ~~   94 (306)
                      ..
T Consensus       555 ~~  556 (597)
T 4fgm_A          555 EL  556 (597)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=98.38  E-value=7.1e-07  Score=66.13  Aligned_cols=44  Identities=25%  Similarity=0.496  Sum_probs=39.7

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK  296 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk  296 (306)
                      .|++|..|.+++||+++| |++||+|++|||+++.+  ..++..+|+
T Consensus        35 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~   78 (112)
T 2p3w_A           35 SGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVD--SSELQEAVL   78 (112)
T ss_dssp             SSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHH
T ss_pred             CCeEEEEECCCChHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHh
Confidence            589999999999999998 99999999999999975  578877775

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.29  E-value=9.7e-07  Score=64.63  Aligned_cols=52  Identities=21%  Similarity=0.249  Sum_probs=40.9

Q ss_pred             cEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC-CCceec
Q psy8436         251 GIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF-PQSSKL  305 (306)
Q Consensus       251 gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~-~~~~~l  305 (306)
                      |++|..+.|+++|+++| |++||+|++|||.++.++.  ++..+++... +..+.|
T Consensus        38 G~~V~~~~pas~A~~aG-l~~GDvI~~ing~~v~~~~--d~~~~~~~~~~g~~v~l   90 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSL   90 (105)
T ss_dssp             EEEEEECSCTHHHHHHT-CCTTCEEEEETTEETTSTT--HHHHHHHHHTTCSEEEE
T ss_pred             EEEEecCCCCCHHHHcC-CCCCCEEEEECCEECCCHH--HHHHHHHhcCCCCeEEE
Confidence            67788888888889998 9999999999999998774  6667776643 444443

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=98.25  E-value=6.9e-07  Score=81.06  Aligned_cols=67  Identities=13%  Similarity=0.254  Sum_probs=50.4

Q ss_pred             CcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436         233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL  305 (306)
Q Consensus       233 ~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l  305 (306)
                      .|+||++....+.. ....++|..|.++|||+++| |++||+|++|||+++.++.   +..+|+. ++..+.|
T Consensus        74 ~G~~~~l~~~~~~~-~~~~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~~v~~~~---~~~~l~~-~g~~v~l  140 (403)
T 3k50_A           74 YGFDYTLYKVLDND-TAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKV---ESELLQG-STRQLQI  140 (403)
T ss_dssp             CSEEEEEEECTTCS-SCEEEEEEEECTTSHHHHTT-CCTTCEEEEETTBCBCTTT---GGGGTSC-SCEEEEE
T ss_pred             cceEEEEEEcCCCC-cceeEEEEEeCCCChHHHcC-CCCCCEEEEECCEEccchh---HHHHhhC-CCCEEEE
Confidence            56778776543211 01247899999999999999 9999999999999999884   5666766 5555544

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=98.22  E-value=2.7e-06  Score=64.29  Aligned_cols=52  Identities=25%  Similarity=0.344  Sum_probs=43.0

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc-CCCceec
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI-FPQSSKL  305 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~-~~~~~~l  305 (306)
                      .|++|..|.+++||+++  |++||+|++|||.++.+  +.++..+|+.. +++.+.|
T Consensus        25 ~gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~~--~~dl~~~l~~~~~g~~v~l   77 (125)
T 2hga_A           25 DGVQIDSVVPGSPASKV--LTPGLVIESINGMPTSN--LTTYSAALKTISVGEVINI   77 (125)
T ss_dssp             CCEEEEEECSSSGGGGT--SCTTCEEEEETTEECSS--HHHHHHHHTTCCTTCEEEE
T ss_pred             CceEEEEECCCChHHHh--cCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEE
Confidence            48999999999999987  99999999999999975  47888888753 4554443

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=98.20  E-value=1.8e-07  Score=83.16  Aligned_cols=59  Identities=19%  Similarity=0.394  Sum_probs=0.0

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDD   94 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~~   94 (306)
                      .|++|..|.++|||+++| |+.||+|++|||+.+.  ++.+...+|+. +..|.|+|.|+...
T Consensus       254 ~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~-~~~v~l~v~R~g~~  312 (332)
T 3num_A          254 SGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVV--SANDVSDVIKR-ESTLNMVVRRGNED  312 (332)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             CceEEEEeccCCChHHcC-CCCCCEEEEECCEECC--CHHHHHHHHhC-CCeEEEEEEECCEE
Confidence            589999999999999999 9999999999999997  45677777775 67899999997643

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=98.19  E-value=4.4e-06  Score=73.83  Aligned_cols=66  Identities=20%  Similarity=0.356  Sum_probs=51.2

Q ss_pred             CcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc-CCCceec
Q psy8436         233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI-FPQSSKL  305 (306)
Q Consensus       233 ~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~-~~~~~~l  305 (306)
                      ..||+.+.....    ..|++|..|.+++||+++| |++||+|++|||.++.+  +.+...+|+.. ++..+.|
T Consensus       229 ~~lGi~~~~~~~----~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~l~~~l~~~~~g~~v~l  295 (324)
T 1y8t_A          229 ASLGVQVTNDKD----TLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINS--ADALVAAVRSKAPGATVAL  295 (324)
T ss_dssp             EECCEEEESCSS----SSSEEEEEECTTSTTTTTT-CCTTCEEEEETTEECCS--HHHHHHHHHTSCTTCEEEE
T ss_pred             cccceEeeeccC----CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEE
Confidence            357887754221    2589999999999999998 99999999999999976  46888888764 4454443

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.18  E-value=2.2e-07  Score=85.79  Aligned_cols=59  Identities=25%  Similarity=0.428  Sum_probs=0.0

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~   93 (306)
                      .|++|..|.++|||+++| |+.||+|++|||+.+.  ++++...+|+..+..+.|+|.|...
T Consensus       383 ~gv~V~~V~~gspA~~aG-L~~GDiI~~vng~~v~--~~~~l~~~l~~~~~~v~l~v~R~g~  441 (448)
T 1ky9_A          383 QGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQRGDS  441 (448)
T ss_dssp             --------------------------------------------------------------
T ss_pred             CeEEEEEecCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHcCCCeEEEEEEECCE
Confidence            479999999999999999 9999999999999998  5678888898876688999988754

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=98.13  E-value=3.4e-06  Score=75.14  Aligned_cols=53  Identities=28%  Similarity=0.425  Sum_probs=45.7

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc-CCCceec
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI-FPQSSKL  305 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~-~~~~~~l  305 (306)
                      .|++|.+|.++|||+++| |++||+|++|||+.+.+  ..+...+|+.. ++..+.|
T Consensus       263 ~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~~v~~--~~~l~~~l~~~~~g~~v~l  316 (345)
T 3stj_A          263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKL  316 (345)
T ss_dssp             SSEEEEEECTTSHHHHHT-CCTTCEECEETTEECSC--HHHHHHHHHTSCTTCEEEE
T ss_pred             ceEEEEEeccCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEE
Confidence            589999999999999999 99999999999999974  57888888875 4555544

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=98.10  E-value=4.7e-06  Score=73.47  Aligned_cols=53  Identities=21%  Similarity=0.277  Sum_probs=45.4

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh-cCCCceec
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD-IFPQSSKL  305 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~-~~~~~~~l  305 (306)
                      .|++|..|.+++||+++| |++||+|++|||+++.+  ..+...+|+. .++..+.|
T Consensus       244 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~--~~~l~~~l~~~~~g~~v~l  297 (318)
T 1te0_A          244 QGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAIS--ALETMDQVAEIRPGSVIPV  297 (318)
T ss_dssp             CCEEEEEECTTSTTTTTC-CCTTCCEEEETTEECCC--HHHHHHHHHTSCTTCEEEE
T ss_pred             CcEEEEEeCCCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEE
Confidence            589999999999999998 99999999999999975  5788888887 45555544

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=98.05  E-value=4.5e-06  Score=79.57  Aligned_cols=63  Identities=17%  Similarity=0.270  Sum_probs=48.7

Q ss_pred             CcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc-CCCceec
Q psy8436         233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI-FPQSSKL  305 (306)
Q Consensus       233 ~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~-~~~~~~l  305 (306)
                      ..||+.+....      .|++|..|.++|||+++| |++||+|++|||..+..   .+...+|+.. ++..+.|
T Consensus       485 ~~lG~~~~~~~------~gv~V~~V~~~spA~~AG-L~~GD~I~aInG~~v~~---~~l~~~l~~~~~g~~v~l  548 (597)
T 4fgm_A          485 VNFGAKYKASP------QGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATE---QSVKRILERYIPGDTVTI  548 (597)
T ss_dssp             CCCSEEEEEET------TEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCT---TTHHHHHTTCCTTCEEEE
T ss_pred             cccceEEeccC------CeEEEEEeCCCChHHHCC-CCCCCEEEEECCEECCH---HHHHHHHHhcCCCCEEEE
Confidence            36888885432      489999999999999999 99999999999999943   4566666653 4445443

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=97.98  E-value=1e-05  Score=72.22  Aligned_cols=53  Identities=23%  Similarity=0.383  Sum_probs=45.2

Q ss_pred             CcEEEEEEcCCChhhhcCCCCC-----------CCEEEEECCEeCCCCCHHHHHHHHhhc-CCCceec
Q psy8436         250 LGIFVKTIFQSGQAAENEKLRE-----------GDEIIAINGVPLENKTHAEAIAMFKDI-FPQSSKL  305 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~-----------GD~Il~VNG~~v~~~~~~eav~~Lk~~-~~~~~~l  305 (306)
                      .|++|.+|.+++||+++| |++           ||+|++|||+++.++  ++...+|.+. ++..+.|
T Consensus       251 ~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~~~~g~~v~l  315 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKVGDEVTV  315 (348)
T ss_dssp             SSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTTCCTTCEEEE
T ss_pred             ceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHhCCCcCEEEE
Confidence            599999999999999999 999           999999999999876  6888888654 4555554

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=97.97  E-value=1.4e-05  Score=70.55  Aligned_cols=45  Identities=22%  Similarity=0.407  Sum_probs=41.2

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      .|++|.+|.+++||+++| |++||.|++|||+.+.+  .++...+|+.
T Consensus       256 ~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~~--~~~l~~~l~~  300 (325)
T 1lcy_A          256 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN--AEDVYEAVRT  300 (325)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHTT
T ss_pred             CCeEEEEeCcCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHhC
Confidence            589999999999999999 99999999999999975  5788888876

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.82  E-value=3.9e-05  Score=78.12  Aligned_cols=70  Identities=13%  Similarity=0.202  Sum_probs=58.1

Q ss_pred             CCceeEEEEecCCCCcCCCeEEEEeCCC--------ChhcccCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeE
Q psy8436          15 SNELGIYIERQDGGAHFSPYLISHIEPG--------GAIHRDGR-FHVGDELIKVNDKRLKGLTIQEAREALNNK-DSHV   84 (306)
Q Consensus        15 ~~~lG~~i~gg~~~~~~~gi~V~~V~~g--------s~A~~~G~-L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~v   84 (306)
                      ..++|+.+.-..     .+++|..|.++        |||+++|. |+ ||+|++|||+++.++.  ++..+|+.. +..|
T Consensus       736 ~~g~G~~~~~~~-----~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~~v  807 (1045)
T 1k32_A          736 SGRIACDFKLDG-----DHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGTSA  807 (1045)
T ss_dssp             CCBCSEEEEEET-----TEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTSEE
T ss_pred             cceecEEEEEeC-----CEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCCEE
Confidence            348898886532     36999999998        99999994 89 9999999999999875  667777765 7789


Q ss_pred             EEEEEeCC
Q psy8436          85 EIVICRNP   92 (306)
Q Consensus        85 ~L~v~r~~   92 (306)
                      .|+|.|..
T Consensus       808 ~l~v~r~~  815 (1045)
T 1k32_A          808 RIRLSGKG  815 (1045)
T ss_dssp             EEEEECSS
T ss_pred             EEEEECCC
Confidence            99999865

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=97.61  E-value=8.3e-06  Score=72.29  Aligned_cols=45  Identities=24%  Similarity=0.423  Sum_probs=0.0

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      .|++|.+|.+++||+++| |++||+|++|||+++.++  .+...+|+.
T Consensus       254 ~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~~~~~l~~  298 (332)
T 3num_A          254 SGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVVSA--NDVSDVIKR  298 (332)
T ss_dssp             ------------------------------------------------
T ss_pred             CceEEEEeccCCChHHcC-CCCCCEEEEECCEECCCH--HHHHHHHhC
Confidence            589999999999999998 999999999999999654  577777764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.55  E-value=9.8e-05  Score=75.13  Aligned_cols=64  Identities=11%  Similarity=0.085  Sum_probs=53.4

Q ss_pred             CcccEEEEcCCCCCCCCCcEEEEEEcCC--------ChhhhcC-CCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCce
Q psy8436         233 KSLGFSIVGGRDSPKGNLGIFVKTIFQS--------GQAAENE-KLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSS  303 (306)
Q Consensus       233 ~~lG~~l~gg~~~~~~~~gi~V~~V~~~--------g~A~~~G-~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~  303 (306)
                      .++|+.+....      .+++|..|.++        +||+++| .|+ ||+|++|||+++.++.  +++.+|+..++..+
T Consensus       737 ~g~G~~~~~~~------~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~~v  807 (1045)
T 1k32_A          737 GRIACDFKLDG------DHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGTSA  807 (1045)
T ss_dssp             CBCSEEEEEET------TEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTSEE
T ss_pred             ceecEEEEEeC------CEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCCEE
Confidence            57898886422      47999999998        9999998 499 9999999999999876  88899998777766


Q ss_pred             ec
Q psy8436         304 KL  305 (306)
Q Consensus       304 ~l  305 (306)
                      .|
T Consensus       808 ~l  809 (1045)
T 1k32_A          808 RI  809 (1045)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.27  E-value=0.00061  Score=63.80  Aligned_cols=55  Identities=7%  Similarity=0.032  Sum_probs=48.1

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC-eEEEEEE
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS-HVEIVIC   89 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~-~v~L~v~   89 (306)
                      .|++|+.|.++++|+..| ++.||+|++|||+.+.  +.++..++|+++.+ .+.|.+.
T Consensus       415 ~gVvvs~V~~~s~a~~~g-~~~gdiI~~vNg~~V~--s~~~l~~~l~~~k~~~l~~~~~  470 (539)
T 4fln_A          415 QIVILSQVLANEVNIGYE-DMNNQQVLKFNGIPIR--NIHHLAHLIDMCKDKYLVFEFE  470 (539)
T ss_dssp             CCEEEEEECCCGGGTTCS-SCCSEEEEEETTEECC--SHHHHHHHHHTCCSSEEEEEET
T ss_pred             eEEEEEEecCCchhhhcC-CCCCCEEEeECCEEcC--CHHHHHHHHHHcCCCeEEEEEC
Confidence            589999999999999999 9999999999999999  57889999999855 4566553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	306
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	8e-20
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	4e-10
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	5e-19
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	2e-13
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	7e-19
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	1e-10
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	3e-18
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	2e-11
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	5e-18
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	2e-12
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	7e-18
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	1e-12
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	8e-18
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	3e-11
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	2e-17
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	3e-12
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	2e-17
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	9e-12
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	2e-17
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	8e-13
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	4e-17
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	2e-10
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	5e-17
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-10
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	5e-17
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	9e-11
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	6e-17
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	2e-11
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	2e-16
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	7e-11
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	3e-16
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	5e-13
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	3e-16
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	8e-16
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	3e-16
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	1e-08
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	3e-16
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	9e-11
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	3e-16
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	9e-15
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	3e-16
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	1e-10
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	3e-16
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	2e-09
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	3e-16
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	6e-12
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	3e-16
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-11
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	5e-16
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	6e-10
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	6e-16
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	2e-11
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	6e-16
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	2e-08
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	9e-16
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	8e-12
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	9e-16
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	5e-12
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	1e-15
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	2e-10
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	2e-15
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	7e-09
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	2e-15
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	2e-13
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	2e-15
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	3e-11
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	7e-15
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	1e-08
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	8e-15
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	2e-11
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	8e-15
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	1e-08
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-14
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-11
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	2e-14
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	1e-06
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	2e-14
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	2e-12
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	2e-14
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	5e-11
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-14
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-10
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	4e-14
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	4e-10
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	7e-14
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	4e-13
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-13
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	3e-12
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-13
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-11
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	7e-13
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	2e-12
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	7e-13
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	2e-08
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	9e-13
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	5e-08
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	1e-12
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	1e-06
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	1e-12
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	4e-12
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	2e-12
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	2e-09
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	2e-12
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	2e-08
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	8e-12
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	7e-11
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	2e-11
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	5e-10
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	3e-11
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	2e-09
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	6e-11
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	8e-07
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-10
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-07
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	3e-10
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	2e-08
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	1e-09
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	4e-09
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	2e-08
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	2e-05
d2z9ia1	88	b.36.1.4 (A:227-314) Protease PepD {Mycobacterium	0.001

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (201), Expect = 8e-20
 Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 2/112 (1%)

Query: 194 DHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIF 253
           D N S  +A   ++ + V    +   ++ TVT +K      LGFS+ GG+ S  G+  + 
Sbjct: 3   DLNSSTDSAASASAASDVSVESTAEATVCTVTLEKMSA--GLGFSLEGGKGSLHGDKPLT 60

Query: 254 VKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL 305
           +  IF+   + ++E ++ GDEI+ + G  ++  T  EA  + K +      +
Sbjct: 61  INRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTI 112

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (131), Expect = 4e-10
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 2/92 (2%)

Query: 10  VVKDDSNELGIYIERQDGGAHF-SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
            ++  S  LG  +E   G  H   P  I+ I  G A  +      GDE++++    ++GL
Sbjct: 34  TLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGL 93

Query: 69  TIQEAREAL-NNKDSHVEIVICRNPDDAKSAT 99
           T  EA   +    D  V IVI R    +K  T
Sbjct: 94  TRFEAWNIIKALPDGPVTIVIRRKSLQSKETT 125

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (192), Expect = 5e-19
 Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
           + TVT +K  G   +G SIV  + + +  LGI+VK++ + G A  + +L  GD++++++G
Sbjct: 5   IITVTLKKQNG---MGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 61

Query: 281 VPLENKTHAEAIAMFK 296
             L   +   A  +  
Sbjct: 62  RSLVGLSQERAAELMT 77

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (153), Expect = 2e-13
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 3  KQFKVFRVVKDDSNELGIYIERQDGGAHF-SPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
          K+ ++  V     N +G+ I    G         +  +  GGA   DGR   GD+L+ V+
Sbjct: 1  KEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVD 60

Query: 62 DKRLKGLTIQEAREALNNKDSHVEIVICR 90
           + L GL+ + A E +    S V + + +
Sbjct: 61 GRSLVGLSQERAAELMTRTSSVVTLEVAK 89

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (191), Expect = 7e-19
 Identities = 39/74 (52%), Positives = 54/74 (72%), Gaps = 2/74 (2%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
           ++T ++GP    LGFSIVGG  SP G+L I+VKT+F  G A+E+ +L+ GD+IIA+NG  
Sbjct: 5   SITLERGPD--GLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQS 62

Query: 283 LENKTHAEAIAMFK 296
           LE  TH EA+A+ K
Sbjct: 63  LEGVTHEEAVAILK 76

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (132), Expect = 1e-10
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 10 VVKDDSNELGIYIERQDGGAHF-SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
           ++   + LG  I    G  H   P  +  +   GA   DGR   GD++I VN + L+G+
Sbjct: 7  TLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGV 66

Query: 69 TIQEAREALNNKDSHVEIVI 88
          T +EA   L      V +++
Sbjct: 67 THEEAVAILKRTKGTVTLMV 86

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.5 bits (188), Expect = 3e-18
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
             T  K  G   LG  +VGG+ +  G LG F+  + +   A     LR GDE++  NG P
Sbjct: 21  RTTMPKDSG-ALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKP 79

Query: 283 LENKTHAEAIAMFKD 297
           L   T+ E   +  +
Sbjct: 80  LPGATNEEVYNIILE 94

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 2e-11
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 6   KVFRVVKDDSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
           K   + KD    LG+ +   +          I+ ++ G      G    GDE+++ N K 
Sbjct: 20  KRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKP 79

Query: 65  LKGLTIQEAREALNN--KDSHVEIVICR 90
           L G T +E    +     +  VEI++ R
Sbjct: 80  LPGATNEEVYNIILESKSEPQVEIIVSR 107

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.1 bits (187), Expect = 5e-18
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
           FTV  ++GP    LG  ++ G  +  G  G++++T+     AA + +L  GD I+ +NG 
Sbjct: 10  FTVELERGPS--GLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGS 67

Query: 282 PLENKTHAEAIAMFK 296
            L    +  A+ + +
Sbjct: 68  SLLGLGYLRAVDLIR 82

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (146), Expect = 2e-12
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 7  VFRV-VKDDSNELGIYIERQDGGAHFSPYL-ISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
          VF V ++   + LG+ +         +P L I  + PG     DGR  +GD +++VN   
Sbjct: 9  VFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSS 68

Query: 65 LKGLTIQEAREALNNKDSHVEIVICRNPDD 94
          L GL    A + + +    +  ++ ++  +
Sbjct: 69 LLGLGYLRAVDLIRHGGKKMRFLVAKSDVE 98

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 74.9 bits (184), Expect = 7e-18
 Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
           + TVT         LG SIVG  +  +G+ GI++ +I + G  A + ++  GD ++ +N 
Sbjct: 2   IITVTLNMEKY-NFLGISIVGQSNE-RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 59

Query: 281 VPLENKTHAEAIAMFKDIFPQSSKL 305
           +  EN ++ +A+ + +DI  +   +
Sbjct: 60  INFENMSNDDAVRVLRDIVHKPGPI 84

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 60.7 bits (147), Expect = 1e-12
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 9  RVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
           +  +  N LGI I  Q          I  I  GGA+  DGR   GD L++VND   + +
Sbjct: 6  TLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENM 65

Query: 69 TIQEAREALNN---KDSHVEIVICR 90
          +  +A   L +   K   + + + +
Sbjct: 66 SNDDAVRVLRDIVHKPGPIVLTVAK 90

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.3 bits (185), Expect = 8e-18
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
           +TVT QK    +  G ++ GGRD+P    G   I +  +   G A     L+E D ++ +
Sbjct: 9   YTVTLQKDSK-RGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADG--LLQENDRVVMV 65

Query: 279 NGVPLENKTHAEAIAMFK 296
           NG P+E+  H+ A+   +
Sbjct: 66  NGTPMEDVLHSFAVQQLR 83

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.2 bits (138), Expect = 3e-11
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 7/91 (7%)

Query: 4  QFKVFRVVKDDSNELGIYIERQDGGAHF----SPYLISHIEPGGAIHRDGRFHVGDELIK 59
          Q+ V  + KD     GI +       HF    +  +IS + PGG    DG     D ++ 
Sbjct: 8  QYTV-TLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGP--ADGLLQENDRVVM 64

Query: 60 VNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
          VN   ++ +    A + L        IV+ R
Sbjct: 65 VNGTPMEDVLHSFAVQQLRKSGKIAAIVVKR 95

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (182), Expect = 2e-17
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)

Query: 219 LSMFTVTFQKGPGQKSLGFSIVGGR---DSPKGNLGIFVKTIFQSGQAAENEKLREGDEI 275
           L +F V  +K      LG SI+G     D+    LGIFVKT+ + G A  + +++  D+I
Sbjct: 1   LELFPVELEKDED--GLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQI 58

Query: 276 IAINGVPLENKTHAEAIAMFK 296
           + ++G+ L   T   A  + +
Sbjct: 59  VEVDGISLVGVTQNFAATVLR 79

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (144), Expect = 3e-12
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 7  VFRV-VKDDSNELGIYIERQDGGAHF----SPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
          +F V ++ D + LGI I     GA          +  +  GGA  RDGR  V D++++V+
Sbjct: 3  LFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVD 62

Query: 62 DKRLKGLTIQEAREALNNKDSHVEIVICR 90
             L G+T   A   L N   +V  VI R
Sbjct: 63 GISLVGVTQNFAATVLRNTKGNVRFVIGR 91

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.8 bits (181), Expect = 2e-17
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 4/79 (5%)

Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
           ++  V   KGP  K LGFSI GG  +    G+  I++  I + G A ++ +L+ GD ++A
Sbjct: 1   TIMEVNLLKGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLA 58

Query: 278 INGVPLENKTHAEAIAMFK 296
           +N   L++  H EA+A  K
Sbjct: 59  VNNTNLQDVRHEEAVASLK 77

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (140), Expect = 9e-12
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 7  VFRV-VKDDSNELGIYIERQDGGAHFS---PYLISHIEPGGAIHRDGRFHVGDELIKVND 62
          +  V +      LG  I    G  H        I+ I  GGA  +DGR  +GD L+ VN+
Sbjct: 2  IMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNN 61

Query: 63 KRLKGLTIQEAREALNNKDSHVEIVICR 90
            L+ +  +EA  +L N    V + + +
Sbjct: 62 TNLQDVRHEEAVASLKNTSDMVYLKVAK 89

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.8 bits (181), Expect = 2e-17
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSP------KGNLGIFVKTIFQSGQAAENEKLREGDEII 276
            V   + P + SLG SIVGGR         +   GIF+K + +   A +N  L+ GD I+
Sbjct: 4   RVELWREPSK-SLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIV 62

Query: 277 AINGVPLENKTHAEAIAMFK 296
            ++G+ L + +H +A+   +
Sbjct: 63  EVDGMDLRDASHEQAVEAIR 82

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (148), Expect = 8e-13
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 4  QFKVFRVVKDDSNELGIYI-------ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDE 56
          Q +   + ++ S  LGI I        R   G       I H+       ++G    GD 
Sbjct: 1  QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 60

Query: 57 LIKVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
          +++V+   L+  + ++A EA+    + V  ++  
Sbjct: 61 IVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 94

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.9 bits (181), Expect = 4e-17
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 2/109 (1%)

Query: 198 SNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGN-LGIFVKT 256
           S  +      +      +S       +      G   LG S+ G +    G  LGIF+K+
Sbjct: 3   SGSSGLKGEPDCYALSLESSEQLTLEIPLNDS-GSAGLGVSLKGNKSRETGTDLGIFIKS 61

Query: 257 IFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL 305
           I   G A ++ +LR  D++IA+NG  L  K++ EA+   +        +
Sbjct: 62  IIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNI 110

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.8 bits (134), Expect = 2e-10
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 10/101 (9%)

Query: 2   EKQFKVFRVVKDDSNELGIYIE--RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
           +   ++  +    S  LG+ ++  +           I  I  GGA  +DGR  + D+LI 
Sbjct: 24  QLTLEI-PLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIA 82

Query: 60  VNDKRLKGLTIQEAREALNNKDSH-------VEIVICRNPD 93
           VN + L G +  EA E L    S        +++VI R   
Sbjct: 83  VNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG 123

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.8 bits (181), Expect = 5e-17
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 207 SNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAEN 266
           S    +    L  +  + T +K       GF+I+GG +    +  + VK++   G AA++
Sbjct: 6   SGLFTRDASQLKGTFLSTTLKKSN--MGFGFTIIGGDE---PDEFLQVKSVIPDGPAAQD 60

Query: 267 EKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSS 303
            K+  GD I+ IN V +   THA+ + +F+ +    S
Sbjct: 61  GKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQS 97

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 1e-10
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 10  VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
            +K  +   G  I    G        +  + P G   +DG+   GD ++ +N+  + G T
Sbjct: 24  TLKKSNMGFGFTI--IGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHT 81

Query: 70  IQEAREALNN--KDSHVEIVICRNPD 93
             +  +   +      V +V+CR   
Sbjct: 82  HADVVKLFQSVPIGQSVNLVLCRGYP 107

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.9 bits (181), Expect = 5e-17
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 206 NSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAE 265
           +S    +      L +  V   +   Q  LG ++    D    ++GI++  I  +  AA+
Sbjct: 5   SSGDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDE-DDIGIYISEIDPNSIAAK 63

Query: 266 NEKLREGDEIIAINGVPLENKTHAEAI 292
           + ++REGD II ING+ ++N+  A A+
Sbjct: 64  DGRIREGDRIIQINGIEVQNREEAVAL 90

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 9e-11
 Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 4/107 (3%)

Query: 2   EKQFKVFRVVKDDSNE-LGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
           E + +   + + +S + LG+ +  +          IS I+P     +DGR   GD +I++
Sbjct: 17  ELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQI 76

Query: 61  NDKRLKGLTIQEAREAL-NNKDSHVEIVICRNPDDAKSATNCDNLQP 106
           N   ++     EA   L + ++ +  ++I R           D+  P
Sbjct: 77  NGIEVQNRE--EAVALLTSEENKNFSLLIARPELQLDEGWMDDDSGP 121

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 72.6 bits (178), Expect = 6e-17
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
           +  VT  K    KS G  IV G           GIF+K I     A    +L+ GD I++
Sbjct: 4   IHMVTLDKTGK-KSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILS 62

Query: 278 INGVPLENKTHAEAIAMFKD 297
           +NG  + N T    I + K+
Sbjct: 63  LNGKDVRNSTEQAVIDLIKE 82

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 57.6 bits (139), Expect = 2e-11
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 10 VVKDDSNELGIYI----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
          + K      GI I     +       +   I  I P    H  GR  VGD ++ +N K +
Sbjct: 9  LDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDV 68

Query: 66 KGLTIQEAREALNNKDSHVEIVICR 90
          +  T Q   + +   D  +E+ I  
Sbjct: 69 RNSTEQAVIDLIKEADFKIELEIQT 93

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.1 bits (174), Expect = 2e-16
 Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSP-----KGNLGIFVKTIFQSGQAAENEKLREGDEII 276
            T+   +  G  SLGF+I+GGR S        + GIFV  I  SG AA+   L+  D II
Sbjct: 10  LTLVLHRDSG--SLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRII 67

Query: 277 AINGVPLENKTHAEAIAMFK 296
            +NG  L   TH +A+  FK
Sbjct: 68  EVNGRDLSRATHDQAVEAFK 87

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (135), Expect = 7e-11
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 6   KVFRVV-KDDSNELGIYI------ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELI 58
           K   +V   DS  LG  I           G+      +S I   G   ++G   + D +I
Sbjct: 8   KSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRII 67

Query: 59  KVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKS 97
           +VN + L   T  +A EA       + + + R      S
Sbjct: 68  EVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSGPSS 106

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.7 bits (173), Expect = 3e-16
 Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
           +   +T  K  G   LG  I+GG +  +G   +++  +   G   ++ +L+ GD++++IN
Sbjct: 8   AFRVITVTKETG---LGLKILGGINRNEGP-LVYIHEVIPGGDCYKDGRLKPGDQLVSIN 63

Query: 280 GVPLENKTHAEAIAMFK 296
              +   +  EA ++  
Sbjct: 64  KESMIGVSFEEAKSIIT 80

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.9 bits (150), Expect = 5e-13
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 4/94 (4%)

Query: 1  MEKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
          +++      +       LG+ I             I  + PGG  ++DGR   GD+L+ +
Sbjct: 3  LDRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSI 62

Query: 61 NDKRLKGLTIQEA----REALNNKDSHVEIVICR 90
          N + + G++ +EA      A    +S  EI   R
Sbjct: 63 NKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR 96

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.1 bits (174), Expect = 3e-16
 Identities = 25/85 (29%), Positives = 45/85 (52%)

Query: 9  RVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
          ++ K  S ELGI I          P +IS I+ G   HR G   +GD+L+ +++ RL   
Sbjct: 15 KLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSC 74

Query: 69 TIQEAREALNNKDSHVEIVICRNPD 93
          ++++A + L   +  V++ I ++ D
Sbjct: 75 SMEDAVQILQQCEDLVKLKIRKDED 99

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.5 bits (170), Expect = 8e-16
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
           F V   K      LG +I        G+  + +  I +   A     L  GD+++AI+ +
Sbjct: 12  FHVKLPKKHSV-ELGITISSPSSRKPGD-PLVISDIKKGSVAHRTGTLELGDKLLAIDNI 69

Query: 282 PLENKTHAEAIAMFK 296
            L++ +  +A+ + +
Sbjct: 70  RLDSCSMEDAVQILQ 84

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (173), Expect = 3e-16
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 214 PKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLR 270
           P  +     T+T  +  G   LG SI GG+ S      + GIF+  + +    A    +R
Sbjct: 2   PARIEEEELTLTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSE-EGPAARAGVR 58

Query: 271 EGDEIIAINGVPLENKTHAEAIAMFK 296
            GD+++ +NGV L+   H EA+   +
Sbjct: 59  VGDKLLEVNGVALQGAEHHEAVEALR 84

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (118), Expect = 1e-08
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 6/94 (6%)

Query: 1  MEKQFKVFRVVKDDSNELGIYIERQDGGAHF----SPYLISHIEPGGAIHRDGRFHVGDE 56
          +E++     +++     LGI I    G   +        IS +   G   R     VGD+
Sbjct: 5  IEEEELTLTILRQTGG-LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA-GVRVGDK 62

Query: 57 LIKVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
          L++VN   L+G    EA EAL    + V++ + R
Sbjct: 63 LLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWR 96

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.1 bits (174), Expect = 3e-16
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 209 ATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEK 268
           AT+K+       +      K  G   LGFS+ GG D       I V  +F +G A++   
Sbjct: 1   ATLKQLDG----IHVTILHKEEGA-GLGFSLAGGADLENK--VITVHRVFPNGLASQEGT 53

Query: 269 LREGDEIIAINGVPLENKTHAEAIAMFK 296
           +++G+E+++ING  L+  TH +A+A+ +
Sbjct: 54  IQKGNEVLSINGKSLKGTTHHDALAILR 81

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 9e-11
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 3   KQFKVFRVV---KDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
           KQ     V    K++   LG  +             +  + P G   ++G    G+E++ 
Sbjct: 4   KQLDGIHVTILHKEEGAGLGFSL-AGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLS 62

Query: 60  VNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCD 102
           +N K LKG T  +A   L       + VI       ++  + +
Sbjct: 63  INGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPDLN 105

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.7 bits (173), Expect = 3e-16
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
           +TV  ++  G   LG +I G  +       I + ++ + G A     +  GD I+AIN  
Sbjct: 5   YTVELKRYGG--PLGITISGTEE---PFDPIIISSLTKGGLAERTGAIHIGDRILAINSS 59

Query: 282 PLENKTHAEAIAMFK 296
            L+ K  +EAI + +
Sbjct: 60  SLKGKPLSEAIHLLQ 74

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.4 bits (162), Expect = 9e-15
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 7  VFRV-VKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
          ++ V +K     LGI I        F P +IS +  GG   R G  H+GD ++ +N   L
Sbjct: 4  IYTVELKRYGGPLGITI--SGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSL 61

Query: 66 KGLTIQEAREALNNKDSHVEIVICRNPDDAKSAT 99
          KG  + EA   L      V + I +  D   +++
Sbjct: 62 KGKPLSEAIHLLQMAGETVTLKIKKQTDAQPASS 95

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.1 bits (174), Expect = 3e-16
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 205 NNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQ 262
           + S+     P +              G   LG  IVGG++ P   G +G ++  I   G 
Sbjct: 3   SGSSGHYIFPHARIKITRDSKDHTVSG-NGLGIRIVGGKEIPGHSGEIGAYIAKILPGGS 61

Query: 263 AAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
           A +  KL EG +++  NG+PL +KT+ E  ++  
Sbjct: 62  AEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIIS 95

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 1e-10
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 2   EKQFKVFRVVKD---DSNELGIYIERQDGGAHFS---PYLISHIEPGGAIHRDGRFHVGD 55
             + K+ R  KD     N LGI I         S      I+ I PGG+  + G+   G 
Sbjct: 13  HARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGM 72

Query: 56  ELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD 93
           ++++ N   L   T +E +  ++ +    EI +  + +
Sbjct: 73  QVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLN 110

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 70.8 bits (173), Expect = 3e-16
 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSP------KGNLGIFVKTIFQSGQAAENEKLREGDEII 276
            V   K    K LGF I  G          +   GIF+  +   G A     L   DE+I
Sbjct: 5   RVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVI 64

Query: 277 AINGVPLENKTHAEAIAMFK 296
            +NG+ +  KT  +   M  
Sbjct: 65  EVNGIEVAGKTLDQVTDMMV 84

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 51.9 bits (124), Expect = 2e-09
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 9  RVVKDDSNE-LGIYIE-------RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
          R++K  S++ LG YI           G        IS + PGG     G   V DE+I+V
Sbjct: 7  RLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEV 66

Query: 61 NDKRLKGLTIQEAREALNNKDSHVEIVI 88
          N   + G T+ +  + +    S++ I +
Sbjct: 67 NGIEVAGKTLDQVTDMMVANSSNLIITV 94

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.3 bits (172), Expect = 3e-16
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 4/79 (5%)

Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
           SL    VT +K      LG SI GGR++    + I +  IF+   A + E L  GD I++
Sbjct: 2   SLQRRRVTVRKADA-GGLGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILS 57

Query: 278 INGVPLENKTHAEAIAMFK 296
           +NG  L + TH EA+   K
Sbjct: 58  VNGEDLSSATHDEAVQALK 76

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.7 bits (142), Expect = 6e-12
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 4  QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
          Q +   V K D+  LGI I  + G  +  P LIS I  G A  +     VGD ++ VN +
Sbjct: 4  QRRRVTVRKADAGGLGISI--KGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGE 61

Query: 64 RLKGLTIQEAREALNNKDSHVEIVICR 90
           L   T  EA +AL      V + +  
Sbjct: 62 DLSSATHDEAVQALKKTGKEVVLEVKY 88

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.4 bits (172), Expect = 3e-16
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 5/78 (6%)

Query: 219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
           + +  VT  K  G +  GFS+  G        G++VK I       +   L+  D ++ +
Sbjct: 5   VELHKVTLYKDSGMEDFGFSVADGLLEK----GVYVKNIRP-AGPGDLGGLKPYDRLLQV 59

Query: 279 NGVPLENKTHAEAIAMFK 296
           N V   +      + +  
Sbjct: 60  NHVRTRDFDCCLVVPLIA 77

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.6 bits (139), Expect = 2e-11
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 4  QFKVFRVVKDDSNE-LGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVND 62
          +     + KD   E  G  +     G       + +I P G     G     D L++VN 
Sbjct: 6  ELHKVTLYKDSGMEDFGFSVA---DGLLEKGVYVKNIRPAGPGDL-GGLKPYDRLLQVNH 61

Query: 63 KRLKGLTIQEAREALNNKDSHVEIVICRNP 92
           R +          +    + +++VI RNP
Sbjct: 62 VRTRDFDCCLVVPLIAESGNKLDLVISRNP 91

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (170), Expect = 5e-16
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 7/75 (9%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
           ++VT          GF + GG+D    N+ + +  I   G  A   +L +GD ++AI+GV
Sbjct: 3   YSVTLTGPGP---WGFRLQGGKDF---NMPLTISRITP-GSKAAQSQLSQGDLVVAIDGV 55

Query: 282 PLENKTHAEAIAMFK 296
             +  TH EA    K
Sbjct: 56  NTDTMTHLEAQNKIK 70

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (127), Expect = 6e-10
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 8  FRVVKDDSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLK 66
          + V        G  ++   GG  F+ P  IS I PG    +  +   GD ++ ++     
Sbjct: 3  YSVTLTGPGPWGFRLQ---GGKDFNMPLTISRITPGSKAAQ-SQLSQGDLVVAIDGVNTD 58

Query: 67 GLTIQEAREALNNKDSHVEIVICRNP 92
           +T  EA+  + +   ++ + + ++ 
Sbjct: 59 TMTHLEAQNKIKSASYNLSLTLQKSK 84

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.9 bits (171), Expect = 6e-16
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
            +T ++G     LGFSI GG D+P    +  IF+  I   G AA++ +LR  D I+ +N 
Sbjct: 4   EITLERGNS--GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNE 61

Query: 281 VPLENKTHAEAIAMFK 296
           V +   TH+ A+   K
Sbjct: 62  VDVREVTHSAAVEALK 77

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.2 bits (138), Expect = 2e-11
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)

Query: 10 VVKDDSNELGIYIERQDGGAHF---SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLK 66
           ++  ++ LG  I       H        I+ I PGGA  +DGR  V D ++ VN+  ++
Sbjct: 6  TLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVR 65

Query: 67 GLTIQEAREALNNKDSHVEIVICRNPD 93
           +T   A EAL    S V + + R   
Sbjct: 66 EVTHSAAVEALKEAGSIVRLYVMRRKP 92

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (171), Expect = 6e-16
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
           S  +  V+ ++    + LGFSI GG +     +GI+V  +   G  AE E LR GD+I+ 
Sbjct: 6   SGEVRLVSLRRAKAHEGLGFSIRGGSEH---GVGIYVSLVEP-GSLAEKEGLRVGDQILR 61

Query: 278 INGVPLENKTHAEAIAMFK 296
           +N   L   THAEA+   K
Sbjct: 62  VNDKSLARVTHAEAVKALK 80

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (117), Expect = 2e-08
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 4  QFKVFRVVKDDSNE-LGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVND 62
          + ++  + +  ++E LG  I  + G  H     +S +EPG    ++G   VGD++++VND
Sbjct: 8  EVRLVSLRRAKAHEGLGFSI--RGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVND 64

Query: 63 KRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKS 97
          K L  +T  EA +AL      V  V         S
Sbjct: 65 KSLARVTHAEAVKALKGSKKLVLSVYSAGRISGPS 99

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (170), Expect = 9e-16
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGN-LGIFVKTIFQSGQAAENEKLREGDEIIAING 280
             V     P     G  + GG  + +       V  I     A     L+ GD +++ING
Sbjct: 10  TEVVLCGDPLS-GFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSING 68

Query: 281 VPLENKTHAEAIAMFKD 297
           +  E+ T  EA  + +D
Sbjct: 69  IATEDGTMEEANQLLRD 85

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (142), Expect = 8e-12
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 10 VVKDDSNELGIYIERQDGGAHF--SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
          +  D  +  G+ ++          SP L+  IEP     R G   VGD ++ +N    + 
Sbjct: 14 LCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATED 73

Query: 68 LTIQEAREALNNKDSHVEIVICRNPD 93
           T++EA + L +     ++V+    D
Sbjct: 74 GTMEEANQLLRDAALAHKVVLEVEFD 99

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (170), Expect = 9e-16
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
            FTV  +KG   K  GFSI GGR+     + ++V  + + G A  N ++R GD+II ING
Sbjct: 12  YFTVDMEKGA--KGFGFSIRGGREYK---MDLYVLRLAEDGPAIRNGRMRVGDQIIEING 66

Query: 281 VPLENKTHAEAIAMFK 296
               + THA AI + K
Sbjct: 67  ESTRDMTHARAIELIK 82

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (143), Expect = 5e-12
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 3   KQFKVFRV-VKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
           + F  F V ++  +   G  I  + G  +     +  +   G   R+GR  VGD++I++N
Sbjct: 8   QDFDYFTVDMEKGAKGFGFSI--RGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEIN 65

Query: 62  DKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKS 97
            +  + +T   A E + +    V +++ R      S
Sbjct: 66  GESTRDMTHARAIELIKSGGRRVRLLLKRGTGSGPS 101

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.8 bits (168), Expect = 1e-15
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 7/80 (8%)

Query: 222 FTVTFQKGPGQKSLGFSIV-----GGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEII 276
           F V   K  G  SLG S+      GG ++   + GI+VK I   G A  + ++ +GD ++
Sbjct: 6   FEVELAKTDG--SLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVL 63

Query: 277 AINGVPLENKTHAEAIAMFK 296
           A+NGV LE  TH +A+   +
Sbjct: 64  AVNGVSLEGATHKQAVETLR 83

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.6 bits (131), Expect = 2e-10
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 10 VVKDDSNELGIYI--ERQDGGAHFS----PYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
           +      LGI +      GG + S       +  I P GA   DGR H GD ++ VN  
Sbjct: 9  ELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGV 68

Query: 64 RLKGLTIQEAREALNNKDSHVEIVICRNPD 93
           L+G T ++A E L N    V +++ +   
Sbjct: 69 SLEGATHKQAVETLRNTGQVVHLLLEKGQV 98

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (168), Expect = 2e-15
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 10/80 (12%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSP-----KGNLGIFVKTIFQSGQAAENEKLREGDEII 276
             V  +K P    LGFSI GG           + GIFV  +   G A++   L+ GD+II
Sbjct: 13  IRVRVEKDPE---LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKII 67

Query: 277 AINGVPLENKTHAEAIAMFK 296
             NG    N  H +A+++ K
Sbjct: 68  QANGYSFINIEHGQAVSLLK 87

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (121), Expect = 7e-09
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 8/96 (8%)

Query: 1  MEKQFKVFRVVKDDSNELGIYI------ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVG 54
           E   +  RV  +   ELG  I                   ++ ++P G          G
Sbjct: 6  HELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGP--ASKLLQPG 63

Query: 55 DELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
          D++I+ N      +   +A   L    + VE++I R
Sbjct: 64 DKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 99

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.9 bits (168), Expect = 2e-15
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 10/94 (10%)

Query: 218 SLSMFT--------VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKL 269
           + +MF+        V   +   + SL  ++ GG DSP     + V  +++ G A  +  +
Sbjct: 5   AATMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSP--VGKVVVSAVYEGGAAERHGGV 62

Query: 270 REGDEIIAINGVPLENKTHAEAIAMFKDIFPQSS 303
            +GDEI+AING  + + T AEA A  +  + Q  
Sbjct: 63  VKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGG 96

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.5 bits (154), Expect = 2e-13
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 11/97 (11%)

Query: 2   EKQFKVFRVVKDDSNELGIYIERQDGGA--HFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
            K  ++ R+ K+ S  L + +E   GG        ++S +  GGA  R G    GDE++ 
Sbjct: 16  GKDVRLLRIKKEGS--LDLALE---GGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMA 70

Query: 60  VNDKRLKGLTIQEA----REALNNKDSHVEIVICRNP 92
           +N K +   T+ EA    ++A N     +++V+   P
Sbjct: 71  INGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCP 107

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (167), Expect = 2e-15
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
           S   V  +K     +LG +I GG ++ +      + TI + G A    +L+ G  I+ +N
Sbjct: 6   SGTLVRVKKSAA--TLGIAIEGGANTRQP--LPRIVTIQRGGSAHNCGQLKVGHVILEVN 61

Query: 280 GVPLENKTHAEAIAMFKDIFPQSSK 304
           G+ L  K H EA  +  + F    +
Sbjct: 62  GLTLRGKEHREAARIIAEAFKTKDR 86

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (138), Expect = 3e-11
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 6/94 (6%)

Query: 10  VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
            VK  +  LGI IE         P  I  I+ GG+ H  G+  VG  +++VN   L+G  
Sbjct: 11  RVKKSAATLGIAIEGGANTRQPLPR-IVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKE 69

Query: 70  IQEA----REALNNKDS-HVEIVICRNPDDAKSA 98
            +EA     EA   KD  +++ ++        S 
Sbjct: 70  HREAARIIAEAFKTKDRDYIDFLVTEFNSGPSSG 103

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (165), Expect = 7e-15
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            V    G G+ SLG +I GG +     LGI++  +   G  AE   L+ GD+I+ +NG  
Sbjct: 23  KVNLVLGDGR-SLGLTIRGGAEY---GLGIYITGVDP-GSEAEGSGLKVGDQILEVNGRS 77

Query: 283 LENKTHAEAIAMFK 296
             N  H EA+ + K
Sbjct: 78  FLNILHDEAVRLLK 91

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (120), Expect = 1e-08
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 6   KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
           K   +V  D   LG+ I  + G  +     I+ ++PG      G   VGD++++VN +  
Sbjct: 22  KKVNLVLGDGRSLGLTI--RGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSF 78

Query: 66  KGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQ 105
             +   EA   L +   H+ + +        + T  D  +
Sbjct: 79  LNILHDEAVRLLKSS-RHLILTVKDVGRLPHARTTVDETK 117

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (164), Expect = 8e-15
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGN------LGIFVKTIFQSGQAAENEKLREGDEII 276
            +  QK PG+  LG SI GG     GN       GIF+  +  +G A  + +LR G  ++
Sbjct: 12  ELCIQKAPGE-RLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLL 70

Query: 277 AINGVPLENKTHAEAIAMFKDI 298
            +N   L   TH EA+ + + +
Sbjct: 71  EVNQQSLLGLTHGEAVQLLRSV 92

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (139), Expect = 2e-11
 Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 4   QFKVFRVVKDDSNELGIYIERQDGGAHFSPY-------LISHIEPGGAIHRDGRFHVGDE 56
             +   + K     LGI I     G   +P         IS + P GA  RDGR  VG  
Sbjct: 9   GLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLR 68

Query: 57  LIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKS 97
           L++VN + L GLT  EA + L +    + +++C   +   S
Sbjct: 69  LLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFESGPS 109

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.5 bits (162), Expect = 8e-15
 Identities = 29/77 (37%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
           S  TV           GF I GGRD    +  I V  + +    AE   LR GD I+AIN
Sbjct: 6   SGLTVDVAGPAP---WGFRISGGRD---FHTPIIVTKVTE-RGKAEAADLRPGDIIVAIN 58

Query: 280 GVPLENKTHAEAIAMFK 296
           G   EN  HAEA +  +
Sbjct: 59  GQSAENMLHAEAQSKIR 75

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.5 bits (118), Expect = 1e-08
 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 3/84 (3%)

Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
          V        G  I    G    +P +++ +   G          GD ++ +N +  + + 
Sbjct: 10 VDVAGPAPWGFRI--SGGRDFHTPIIVTKVTERGKAEA-ADLRPGDIIVAINGQSAENML 66

Query: 70 IQEAREALNNKDSHVEIVICRNPD 93
            EA+  +    S + + + R+  
Sbjct: 67 HAEAQSKIRQSASPLRLQLDRSSG 90

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.6 bits (162), Expect = 2e-14
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPK-GNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
             V     P     G  + G   + +  +    +  I     A     L+ GD ++AING
Sbjct: 17  TEVVLTADPVT-GFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAING 75

Query: 281 VPLENKTHAEAIAMFKD 297
           +P E+ T  EA  + +D
Sbjct: 76  IPTEDSTFEEANQLLRD 92

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.5 bits (141), Expect = 2e-11
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 10  VVKDDSNELGIYIERQDGGAHF--SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
           +  D     GI ++          SP LIS+IE      R G   +GD ++ +N    + 
Sbjct: 21  LTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTED 80

Query: 68  LTIQEAREALNNKDSHVEIVICRNPDDAKS 97
            T +EA + L +     ++ +    D A+S
Sbjct: 81  STFEEANQLLRDSSITSKVTLEIEFDVAES 110

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.8 bits (160), Expect = 2e-14
 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 5/74 (6%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            VT +K PG   LGF+I GG+ S    LGIF+  +      A    L+EGD+++A+N V 
Sbjct: 18  IVTLKKPPGA-QLGFNIRGGKAS---QLGIFISKVIP-DSDAHRAGLQEGDQVLAVNDVD 72

Query: 283 LENKTHAEAIAMFK 296
            ++  H++A+ + K
Sbjct: 73  FQDIEHSKAVEILK 86

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (104), Expect = 1e-06
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 6  KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
          ++  + K    +LG  I  + G A      IS + P    HR G    GD+++ VND   
Sbjct: 17 RIVTLKKPPGAQLGFNI--RGGKASQLGIFISKVIPDSDAHRAGLQE-GDQVLAVNDVDF 73

Query: 66 KGLTIQEAREALNNKDSHVEIVICR 90
          + +   +A E L      + + +  
Sbjct: 74 QDIEHSKAVEILKTA-REISMRVRF 97

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (160), Expect = 2e-14
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
                 +      LGFSI GG+ S     G+ GIFV  I + G A     L+ GD +++I
Sbjct: 9   HVACLARSER--GLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI 66

Query: 279 NGVPLENKTHAEAIAMFK 296
           NGV +    H  A+++  
Sbjct: 67  NGVDVTEARHDHAVSLLT 84

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (147), Expect = 2e-12
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 6   KVFRVVKDDSNELGIYIERQDGGAHF----SPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
            V  + + +   LG  I    G   +    +   +S I  GGA HR G   VGD ++ +N
Sbjct: 9   HVACLARSERG-LGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSIN 67

Query: 62  DKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKS 97
              +       A   L      + +++ R      S
Sbjct: 68  GVDVTEARHDHAVSLLTAASPTIALLLEREAGSGPS 103

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (160), Expect = 2e-14
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENE-KLREGDEIIAIN 279
           +  +  +        GF++ GG D     + + V  +     A     +L EGD+++ IN
Sbjct: 9   LVLIRMKPDENG-RFGFNVKGGYD---QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLIN 64

Query: 280 GVPLENKTHAEAIAMFK 296
           G  +   TH + +   K
Sbjct: 65  GRDIAEHTHDQVVLFIK 81

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 5e-11
 Identities = 15/96 (15%), Positives = 38/96 (39%), Gaps = 7/96 (7%)

Query: 2  EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGG-AIHRDGRFHVGDELIKV 60
               + R+  D++   G  +  + G     P ++S + PG  A     R + GD+++ +
Sbjct: 6  HDNLVLIRMKPDENGRFGFNV--KGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLI 63

Query: 61 NDKRLKGLTIQEA----REALNNKDSHVEIVICRNP 92
          N + +   T  +     + +       + +++  N 
Sbjct: 64 NGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNA 99

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (160), Expect = 3e-14
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 216 SLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKG----NLGIFVKTIFQSGQAAENEKLRE 271
           S SL    V   +   +   GF I+   + P+      +   +  I     A    KL+ 
Sbjct: 6   SGSLQTSDVVIHRKENE-GFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKV 64

Query: 272 GDEIIAINGVPLENKTHAEAIAMFKD 297
           GD I+A+NG  + N  HA+ + + KD
Sbjct: 65  GDRILAVNGQSIINMPHADIVKLIKD 90

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (132), Expect = 2e-10
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 10  VVKDDSNELGIYI-----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
           + + ++   G  I       + G     P+ I  I  G    R  +  VGD ++ VN + 
Sbjct: 16  IHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQS 75

Query: 65  LKGLTIQEAREALNNKDSHVEIVICRNPD 93
           +  +   +  + + +    V + I    +
Sbjct: 76  IINMPHADIVKLIKDAGLSVTLRIIPQEE 104

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (158), Expect = 4e-14
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
               +KGP     GF + G     KG LG +++ +   G  AE   L  GD ++ +NG  
Sbjct: 6   LCCLEKGPN--GYGFHLHGE----KGKLGQYIRLVEP-GSPAEKAGLLAGDRLVEVNGEN 58

Query: 283 LENKTHAEAIAMFK 296
           +E +TH + ++  +
Sbjct: 59  VEKETHQQVVSRIR 72

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (128), Expect = 4e-10
 Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
           ++   N  G ++    G        I  +EPG    + G    GD L++VN + ++  T
Sbjct: 8  CLEKGPNGYGFHLH---GEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKET 63

Query: 70 IQEAREALNNKDSHVEIVICRNPDD 94
           Q+    +    + V +++     D
Sbjct: 64 HQQVVSRIRAALNAVRLLVVDPETD 88

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (155), Expect = 7e-14
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
           V  +K  G+  LG  IV           + +  +   G A ++ KL  GD+I++ING  L
Sbjct: 2   VFIEKQKGE-ILGVVIVESGWGSI-LPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSL 59

Query: 284 ENKTHAEAIAMFKDIFPQSS 303
                +   ++ K +  QS 
Sbjct: 60  VGLPLSTCQSIIKGLKNQSR 79

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (150), Expect = 4e-13
 Identities = 15/80 (18%), Positives = 36/80 (45%)

Query: 9  RVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
           + K     LG+ I     G+     +I+++  GG   + G+ ++GD+++ +N   L GL
Sbjct: 3  FIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGL 62

Query: 69 TIQEAREALNNKDSHVEIVI 88
           +   +  +    +   + +
Sbjct: 63 PLSTCQSIIKGLKNQSRVKL 82

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.9 bits (155), Expect = 2e-13
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
             V   K PG  +LG S+       K    I +  I  +     +  L  GD I++I+G 
Sbjct: 17  LMVEIVKTPGS-ALGISLTTTSLRNKS--VITIDRIKPASVVDRSGALHPGDHILSIDGT 73

Query: 282 PLENKTHAEAIAMFK 296
            +E+ +  EA  +  
Sbjct: 74  SMEHCSLLEATKLLA 88

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (146), Expect = 3e-12
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 1/93 (1%)

Query: 9   RVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
            +VK   + LGI +         S   I  I+P   + R G  H GD ++ ++   ++  
Sbjct: 20  EIVKTPGSALGISLTTTSLRNK-SVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHC 78

Query: 69  TIQEAREALNNKDSHVEIVICRNPDDAKSATNC 101
           ++ EA + L +    V + I   P   +     
Sbjct: 79  SLLEATKLLASISEKVRLEILPVPQSQRPLRPS 111

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (153), Expect = 2e-13
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
             V  ++       GF I+GG +       I +  +   G A  + +L  GDE++ ++G+
Sbjct: 11  LDVHLRRMES--GFGFRILGGDEP---GQPILIGAVIAMGSADRDGRLHPGDELVYVDGI 65

Query: 282 PLENKTHAEAIAMFKDIFPQSS 303
           P+  KTH   I +         
Sbjct: 66  PVAGKTHRYVIDLMHHAARNGQ 87

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 2e-11
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 5   FKVFRV-VKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
           +K   V ++   +  G  I    G     P LI  +   G+  RDGR H GDEL+ V+  
Sbjct: 8   YKELDVHLRRMESGFGFRI--LGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGI 65

Query: 64  RLKGLTIQEAREALNN--KDSHVEIVICRNPDDAKS 97
            + G T +   + +++  ++  V + + R      S
Sbjct: 66  PVAGKTHRYVIDLMHHAARNGQVNLTVRRKVLSGPS 101

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.8 bits (150), Expect = 7e-13
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            +   +G     LGF+IVGG D      GIF+  I   G A  + +LR+GD+I+++NGV 
Sbjct: 12  RIVIHRGST--GLGFNIVGGEDGE----GIFISFILAGGPADLSGELRKGDQILSVNGVD 65

Query: 283 LENKTHAEAIAMFK 296
           L N +H +A    K
Sbjct: 66  LRNASHEQAAIALK 79

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.3 bits (146), Expect = 2e-12
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
          V+   S  LG  I    GG       IS I  GG     G    GD+++ VN   L+  +
Sbjct: 14 VIHRGSTGLGFNIV---GGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 70

Query: 70 IQEAREALNNKDSHVEIVICRNPDD 94
           ++A  AL N    V I+    P++
Sbjct: 71 HEQAAIALKNAGQTVTIIAQYKPEE 95

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.6 bits (149), Expect = 7e-13
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 11/83 (13%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRD---------SPKGNLGIFVKTIFQSGQAAENEKLREGD 273
           TV  QK   +   GF + G +          +P      +++++ + G  A    LR GD
Sbjct: 8   TVLLQKKDSE-GFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDE-GGVAWRAGLRMGD 65

Query: 274 EIIAINGVPLENKTHAEAIAMFK 296
            +I +NG  +    H + + M +
Sbjct: 66  FLIEVNGQNVVKVGHRQVVNMIR 88

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.6 bits (118), Expect = 2e-08
 Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 11/97 (11%)

Query: 6   KVFRVVKDDSNELGIYI----------ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGD 55
           K   + K DS   G  +          E     A  +   +  ++ GG   R G   +GD
Sbjct: 7   KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGD 65

Query: 56  ELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNP 92
            LI+VN + +  +  ++    +    + + + +    
Sbjct: 66  FLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT 102

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.6 bits (149), Expect = 9e-13
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
           S  +V+          GF + GG+D    N+ + +    + G  A    +R GD +++I+
Sbjct: 5   SSGSVSLVGPAP---WGFRLQGGKD---FNMPLTIS-SLKDGGKASQAHVRIGDVVLSID 57

Query: 280 GVPLENKTHAEAIAMFK 296
           G+  +  TH EA    K
Sbjct: 58  GISAQGMTHLEAQNKIK 74

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.1 bits (114), Expect = 5e-08
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 18 LGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL 77
           G  ++   GG  F+  L       G         +GD ++ ++    +G+T  EA+  +
Sbjct: 17 WGFRLQ---GGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKI 73

Query: 78 NNKDSHVEIVICRNPDDAKS 97
                + + + R    AKS
Sbjct: 74 KACTGSLNMTLQRASAAAKS 93

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (148), Expect = 1e-12
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            V      G + LG SI  G        GIF+  +   G  +    L  GD+I+ +NGV 
Sbjct: 11  KVFISL-VGSRGLGCSISSGPIQ---KPGIFISHVKP-GSLSAEVGLEIGDQIVEVNGVD 65

Query: 283 LENKTHAEAIAMFK 296
             N  H EA+ + K
Sbjct: 66  FSNLDHKEAVNVLK 79

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (104), Expect = 1e-06
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 6/93 (6%)

Query: 3  KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYL-ISHIEPGGAIHRDGRFHVGDELIKVN 61
          K+ KVF +    S  LG  I     G    P + ISH++PG      G   +GD++++VN
Sbjct: 8  KEKKVF-ISLVGSRGLGCSIS---SGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVN 62

Query: 62 DKRLKGLTIQEAREALNNKDSHVEIVICRNPDD 94
                L  +EA   L +  S    ++     +
Sbjct: 63 GVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRE 95

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (146), Expect = 1e-12
 Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 4  QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
          + ++ +  K+    +GI ++  +         ++ I  GG IHR G  HVGDE+ ++N  
Sbjct: 1  RSRLVQFQKNTDEPMGITLKMNELNHCI----VARIMHGGMIHRQGTLHVGDEIREINGI 56

Query: 64 RLKGLTIQEAREALNNKDSHVEIVICRNPDD 94
           +   T+++ ++ L      +   I  +  +
Sbjct: 57 SVANQTVEQLQKMLREMRGSITFKIVPSYRE 87

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (143), Expect = 4e-12
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            V FQK   +  +G ++     +        V  I   G       L  GDEI  ING+ 
Sbjct: 4   LVQFQKNTDE-PMGITLKMNELN-----HCIVARIMHGGMIHRQGTLHVGDEIREINGIS 57

Query: 283 LENKTHAEAIAMFK 296
           + N+T  +   M +
Sbjct: 58  VANQTVEQLQKMLR 71

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (148), Expect = 2e-12
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 206 NSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAE 265
           +S    ++ +        V  QKG     LG SIV G        GI+V  +   G  A 
Sbjct: 5   SSGGERRKDRPYVEEPRHVKVQKGSE--PLGISIVSGEKG-----GIYVSKVTV-GSIAH 56

Query: 266 NEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
              L  GD+++  NG+ L + T  +A  +  
Sbjct: 57  QAGLEYGDQLLEFNGINLRSATEQQARLIIG 87

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 2e-09
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 10  VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
            V+  S  LGI I   + G  +    +S +  G   H+ G    GD+L++ N   L+  T
Sbjct: 24  KVQKGSEPLGISIVSGEKGGIY----VSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSAT 78

Query: 70  IQEAREALNNKDSHVEIVICRNPD 93
            Q+AR  +  +   + I+   NP 
Sbjct: 79  EQQARLIIGQQCDTITILAQYNPH 102

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.4 bits (146), Expect = 2e-12
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 230 PGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHA 289
           PG    GF + GG D    N  + + T    G  A    L  GD I+AI+G   E+ THA
Sbjct: 12  PGPAPWGFRLSGGID---FNQPLVI-TRITPGSKAAAANLCPGDVILAIDGFGTESMTHA 67

Query: 290 EAIAMFK 296
           +A    K
Sbjct: 68  DAQDRIK 74

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (117), Expect = 2e-08
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
          VV       G  +    GG  F+  L+      G+         GD ++ ++    + +T
Sbjct: 9  VVLPGPAPWGFRLS---GGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMT 65

Query: 70 IQEAREALNNKDSHVEIVICRNPDDAKS 97
            +A++ +      + + I R      S
Sbjct: 66 HADAQDRIKAASYQLCLKIDRAETRLWS 93

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.8 bits (142), Expect = 8e-12
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            V  +K      LG ++    D       + +  I + G A ++  L EGDE++ ING+ 
Sbjct: 21  IVRIEKARDI-PLGATVRNEMD------SVIISRIVKGGAAEKSGLLHEGDEVLEINGIE 73

Query: 283 LENKTHAEAIAMFK 296
           +  K   E   +  
Sbjct: 74  IRGKDVNEVFDLLS 87

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.1 bits (135), Expect = 7e-11
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 6  KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
          K+ R+ K     LG  +  +         +IS I  GGA  + G  H GDE++++N   +
Sbjct: 20 KIVRIEKARDIPLGATVRNEMD-----SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEI 74

Query: 66 KGLTIQEAREALNNKDSHVEIVI 88
          +G  + E  + L++    +  V+
Sbjct: 75 RGKDVNEVFDLLSDMHGTLTFVL 97

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 2e-11
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 10/73 (13%)

Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
           +T  +G      GF+I            + V+ +   G  AE   L++ D ++ +N  P+
Sbjct: 1   ITIPRGKD--GFGFTICCDS-------PVRVQAVDS-GGPAERAGLQQLDTVLQLNERPV 50

Query: 284 ENKTHAEAIAMFK 296
           E+    E     +
Sbjct: 51  EHWKCVELAHEIR 63

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (127), Expect = 5e-10
 Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 20 IYIERQDGGAHFS-----PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAR 74
          I I R   G  F+     P  +  ++ GG   R G     D ++++N++ ++     E  
Sbjct: 1  ITIPRGKDGFGFTICCDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELA 59

Query: 75 EALNNKDSHVEIVICR 90
            + +  S + +++ R
Sbjct: 60 HEIRSCPSEIILLVWR 75

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.4 bits (138), Expect = 3e-11
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
           + +V   K      LGF +      P     + +  + + G A ++  ++ GD I+A+N 
Sbjct: 2   VISVRLFKRKVG-GLGFLVKERVSKP----PVIISDLIRGGAAEQSGLIQAGDIILAVND 56

Query: 281 VPLENKTHAEAIAMFK 296
            PL + ++  A+ + +
Sbjct: 57  RPLVDLSYDSALEVLR 72

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.4 bits (125), Expect = 2e-09
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 9  RVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
          R+ K     LG  ++         P +IS +  GGA  + G    GD ++ VND+ L  L
Sbjct: 6  RLFKRKVGGLGFLVK---ERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 62

Query: 69 TIQEAREAL-NNKDSHVEIVICRNPDD 94
          +   A E L         ++I R P+ 
Sbjct: 63 SYDSALEVLRGIASETHVVLILRGPEG 89

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (134), Expect = 6e-11
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
           TV  ++   +  LGFS+  G           + ++ + G  AE   +R G  II ING  
Sbjct: 3   TVLIRRPDLRYQLGFSVQNG----------IICSLMR-GGIAERGGVRVGHRIIEINGQS 51

Query: 283 LENKTHAEAIAMFK 296
           +    H + + +  
Sbjct: 52  VVATPHEKIVHILS 65

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (104), Expect = 8e-07
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 11/80 (13%)

Query: 10 VVKDDSNE-LGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
          + + D    LG  ++    G      +I  +  GG   R G   VG  +I++N + +   
Sbjct: 6  IRRPDLRYQLGFSVQ---NG------IICSLMRGGIAER-GGVRVGHRIIEINGQSVVAT 55

Query: 69 TIQEAREALNNKDSHVEIVI 88
            ++    L+N    + +  
Sbjct: 56 PHEKIVHILSNAVGEIHMKT 75

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (133), Expect = 1e-10
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 11/78 (14%)

Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
           + T+T  KG   +  GF+I       +         + Q         L EGD I+ IN 
Sbjct: 11  LMTLTIVKGA--QGFGFTIADSPTGQR---------VKQILDIQGCPGLCEGDLIVEINQ 59

Query: 281 VPLENKTHAEAIAMFKDI 298
             ++N +H E + + KD 
Sbjct: 60  QNVQNLSHTEVVDILKDC 77

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 1e-07
 Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 11/94 (11%)

Query: 2  EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
          + +     +VK  +   G  I                ++    I        GD ++++N
Sbjct: 8  QAELMTLTIVKG-AQGFGFTIADSPT--------GQRVKQILDIQGCPGLCEGDLIVEIN 58

Query: 62 DKRLKGLTIQEAREALNN--KDSHVEIVICRNPD 93
           + ++ L+  E  + L +    S   ++I R   
Sbjct: 59 QQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSG 92

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.0 bits (132), Expect = 3e-10
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 8/92 (8%)

Query: 212 KRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLRE 271
           K   S    +       G     LG  ++           + +  +   G AA +  L+ 
Sbjct: 19  KASVSSLNKVIQTKLTVGN--LGLGLVVIQNGP------YLQISHLINKGAAASDGILQP 70

Query: 272 GDEIIAINGVPLENKTHAEAIAMFKDIFPQSS 303
           GD +I++    +   T  E + + ++I   + 
Sbjct: 71  GDVLISVGHANVLGYTLREFLKLLQNITIGTV 102

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (119), Expect = 2e-08
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 18  LGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL 77
           LG+ + +           ISH+   GA   DG    GD LI V    + G T++E  + L
Sbjct: 40  LGLVVIQNGPYL-----QISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLL 94

Query: 78  NN--KDSHVEIVICRNPDD 94
            N    + ++I   R   +
Sbjct: 95  QNITIGTVLQIKAYRGFLE 113

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 1e-09
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            V   K      +G  +    +      GIFV+ +  +   A    LR GD+++ ING  
Sbjct: 5   EVILCKDQDG-KIGLRLKSIDN------GIFVQLVQ-ANSPASLVGLRFGDQVLQINGEN 56

Query: 283 LENKTHAEAIAMFK 296
               +  +A  + K
Sbjct: 57  CAGWSSDKAHKVLK 70

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (121), Expect = 4e-09
 Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
          + KD   ++G+ ++  D G       +  ++        G    GD+++++N +   G +
Sbjct: 8  LCKDQDGKIGLRLKSIDNGI-----FVQLVQANSPASLVG-LRFGDQVLQINGENCAGWS 61

Query: 70 IQEAREAL-NNKDSHVEIVICRNP 92
            +A + L       + + I   P
Sbjct: 62 SDKAHKVLKQAFGEKITMTIRDRP 85

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.2 bits (117), Expect = 2e-08
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 10/74 (13%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
            + F    G   LGF++ G          + V  +     +A     +EGD I++I GV 
Sbjct: 18  GIHFTVEEG--DLGFTLRGNTP-------VQVHFLDP-HCSASLAGAKEGDYIVSIQGVD 67

Query: 283 LENKTHAEAIAMFK 296
            +  T +E + + K
Sbjct: 68  CKWLTVSEVMKLLK 81

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 2e-05
 Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 12/74 (16%)

Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
           T+T  K      +GF                + +I +   +A    L     I  ING  
Sbjct: 7   TITMHKDS-TGHVGFIFKN----------GKITSIVK-DSSAARNGLLTEHNICEINGQN 54

Query: 283 LENKTHAEAIAMFK 296
           +     ++   +  
Sbjct: 55  VIGLKDSQIADILS 68

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 34.9 bits (80), Expect = 0.001
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 234 SLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAI 292
           SLG  +   +D+     G  +  +  +G AA N  + +G  +  ++  P+ +     A 
Sbjct: 4   SLGVQVTNDKDTL----GAKIVEV-VAGGAAANAGVPKGVVVTKVDDRPINSADALVAA 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	306
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.88
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.88
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.88
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.88
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.87
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.87
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.86
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.86
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.86
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.85
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.85
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.85
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.85
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.85
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.84
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.84
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.84
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.84
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.84
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.83
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.83
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.83
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.83
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.83
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.82
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.82
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.82
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.82
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.81
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.81
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.81
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.81
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.81
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.81
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.81
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.81
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.81
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.81
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.81
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.81
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.8
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.8
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.8
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.8
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.8
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.8
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.8
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.8
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.79
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.79
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.79
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.79
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.79
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.79
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.79
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.79
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.79
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.79
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.78
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.78
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.77
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.77
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.77
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.77
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.77
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.77
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.77
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.76
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.76
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.76
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.76
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.76
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.76
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.75
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.75
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.75
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.75
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.75
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.75
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.75
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.75
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.74
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.74
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.74
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.73
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.73
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.73
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.72
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.72
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.72
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.72
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.72
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.71
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.71
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.7
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.7
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.7
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.7
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.7
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.69
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.68
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.68
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.68
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.67
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.67
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	99.67
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.66
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.65
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.62
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.61
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.58
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	99.57
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.5
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.38
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	99.27
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.11
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	99.08
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	99.06
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	98.93
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.91
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.89
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.88
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	98.87
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.83
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	98.7
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	98.62
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.54
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.48
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	98.3

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1e-22  Score=146.77  Aligned_cols=87  Identities=20%  Similarity=0.318  Sum_probs=75.5

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCC-------CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGG-------AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL   77 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~-------~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l   77 (306)
                      .|+|+|.|+++++|||+|+||...       ....|+||+.|.++|||+++|+|++||+||+|||+++.+++|++|+++|
T Consensus         2 pr~V~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~l   81 (96)
T d2fcfa1           2 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAI   81 (96)
T ss_dssp             CEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CEEEEEEeCCCCCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHHH
Confidence            589999999999999999987432       2245899999999999999999999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeC
Q psy8436          78 NNKDSHVEIVICRN   91 (306)
Q Consensus        78 ~~~~~~v~L~v~r~   91 (306)
                      +++++.|+|+|+|-
T Consensus        82 k~~~~~v~L~V~r~   95 (96)
T d2fcfa1          82 RKAGNPVVFMVQSI   95 (96)
T ss_dssp             HTCCSSEEEEEECC
T ss_pred             HcCCCeEEEEEEEc
Confidence            99999999999873

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.88  E-value=1.9e-22  Score=144.85  Aligned_cols=88  Identities=24%  Similarity=0.376  Sum_probs=80.1

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCC----CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGG----AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALN   78 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~----~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~   78 (306)
                      +.+++|.|.|.++.+|||+|.++...    ....|+||+.|.|+|||+++|+|++||+||+|||+++.+++|++|+++|+
T Consensus         2 e~i~~V~L~k~~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~   81 (94)
T d1ihja_           2 ELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIK   81 (94)
T ss_dssp             CEEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CEEEEEEEEeCCCCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHH
Confidence            46899999999889999999988432    12347999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEe
Q psy8436          79 NKDSHVEIVICR   90 (306)
Q Consensus        79 ~~~~~v~L~v~r   90 (306)
                      +++..|+|+|.|
T Consensus        82 ~~~~~v~L~V~R   93 (94)
T d1ihja_          82 EADFKIELEIQT   93 (94)
T ss_dssp             HSCSEEEEEEEE
T ss_pred             cCCCEEEEEEEe
Confidence            999999999987

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.88  E-value=6.3e-23  Score=146.34  Aligned_cols=88  Identities=25%  Similarity=0.348  Sum_probs=80.0

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC---
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK---   80 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~---   80 (306)
                      ++.+|+|.|+..++|||+|.|+.+.....|+||++|.|+|||+++|+|++||+|++|||+++.+++|++|+++||.+   
T Consensus         1 ~i~tV~l~k~~~~~lGi~i~gg~~~~~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~   80 (92)
T d2f0aa1           1 MIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHK   80 (92)
T ss_dssp             CEEEEEECHHHHCSCCEEEECCCCTTSCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHS
T ss_pred             CEEEEEEEeCCCCccCEEEEccCCCCCCCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCC
Confidence            47899999988889999999997665557999999999999999999999999999999999999999999999875   


Q ss_pred             CCeEEEEEEeC
Q psy8436          81 DSHVEIVICRN   91 (306)
Q Consensus        81 ~~~v~L~v~r~   91 (306)
                      ...|+|+|.|.
T Consensus        81 ~~~v~L~V~R~   91 (92)
T d2f0aa1          81 PGPIVLTVAKL   91 (92)
T ss_dssp             SSCEEEEEECC
T ss_pred             CCcEEEEEEeC
Confidence            45799999985

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=1.6e-22  Score=144.90  Aligned_cols=88  Identities=27%  Similarity=0.452  Sum_probs=79.3

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCC---cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGA---HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK   80 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~---~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~   80 (306)
                      |+++|+|.|. ..+|||+|.||.+..   ...|+||+.|.++|||+++|+|++||+|++|||++|.+++|++|+++|+++
T Consensus         1 E~~~V~l~k~-~~glG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~   79 (93)
T d1rgra_           1 EYEEITLERG-NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA   79 (93)
T ss_dssp             CEEEEEEECC-SSCCSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHT
T ss_pred             CCEEEEEEeC-CCcCCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcC
Confidence            5789999995 568999999885432   346899999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEeCC
Q psy8436          81 DSHVEIVICRNP   92 (306)
Q Consensus        81 ~~~v~L~v~r~~   92 (306)
                      ++.|+|+|.|..
T Consensus        80 ~~~v~L~v~R~~   91 (93)
T d1rgra_          80 GSIVRLYVMRRK   91 (93)
T ss_dssp             TTEEEEEEECSC
T ss_pred             CCEEEEEEEeCC
Confidence            999999999864

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=2.5e-22  Score=142.51  Aligned_cols=86  Identities=31%  Similarity=0.361  Sum_probs=79.9

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      +.++|+|.|+++++|||+|.++.+..  .++||..|.|+|||+++|.|++||+|++|||+++.+++|++|+.+|++++..
T Consensus         4 q~r~V~l~k~~~~~lG~~i~gg~~~~--~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~   81 (90)
T d1qava_           4 QRRRVTVRKADAGGLGISIKGGRENK--MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKE   81 (90)
T ss_dssp             SCEEEEEECCTTTCCCEEEEEEGGGT--EEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred             eEEEEEEEeCCCCccCEEEEccccCC--CCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            46899999988889999999886543  5799999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeC
Q psy8436          84 VEIVICRN   91 (306)
Q Consensus        84 v~L~v~r~   91 (306)
                      |+|+|.|.
T Consensus        82 v~l~v~~~   89 (90)
T d1qava_          82 VVLEVKYM   89 (90)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEe
Confidence            99999875

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.8e-22  Score=141.53  Aligned_cols=88  Identities=27%  Similarity=0.438  Sum_probs=78.9

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCC---cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGA---HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK   80 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~---~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~   80 (306)
                      .+..|+|.|.+ .+|||+|.|+....   ...|+||+.|.|+|||+++|+|++||+|++|||+++.+++|++|+++|+++
T Consensus         1 tv~~V~L~k~~-~glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~   79 (92)
T d2fe5a1           1 TIMEVNLLKGP-KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT   79 (92)
T ss_dssp             CEEEEEEECCT-TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC
T ss_pred             CEEEEEEEECC-CccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcC
Confidence            36789999965 68999999985432   236899999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEeCC
Q psy8436          81 DSHVEIVICRNP   92 (306)
Q Consensus        81 ~~~v~L~v~r~~   92 (306)
                      ++.|+|+|.|+.
T Consensus        80 ~~~v~L~v~Rpg   91 (92)
T d2fe5a1          80 SDMVYLKVAKPG   91 (92)
T ss_dssp             CSEEEEEEECCC
T ss_pred             CCEEEEEEECCC
Confidence            999999999864

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.9e-22  Score=143.04  Aligned_cols=88  Identities=31%  Similarity=0.457  Sum_probs=78.1

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCC----CCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDG----GAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN   79 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~----~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~   79 (306)
                      ++.+|+|.|+. .+|||+|.|+..    .....|+||+.|.++|||+++|+|++||+|++|||+++.+++|++|+++|++
T Consensus         2 e~~~V~L~k~~-~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~   80 (94)
T d1wf8a1           2 ELFPVELEKDE-DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRN   80 (94)
T ss_dssp             EEEEEEEECBT-TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHH
T ss_pred             eEEEEEEEeCC-CCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            57899999965 589999998632    2223579999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEEeCC
Q psy8436          80 KDSHVEIVICRNP   92 (306)
Q Consensus        80 ~~~~v~L~v~r~~   92 (306)
                      ++..|+|+|.|.+
T Consensus        81 ~~~~v~L~V~R~k   93 (94)
T d1wf8a1          81 TKGNVRFVIGREK   93 (94)
T ss_dssp             CCSEEEEEEEEEC
T ss_pred             CCCeEEEEEEeCC
Confidence            9999999999864

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.5e-21  Score=139.33  Aligned_cols=89  Identities=26%  Similarity=0.443  Sum_probs=78.2

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCC-cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK   80 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~-~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~   80 (306)
                      |-++.+|++.|.  .+|||+|.++.+.. ...|+||++|.|+|||+++|+|++||+||+|||+++.+++|++|+++|+++
T Consensus         2 epei~~v~l~~~--~glG~~i~g~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~   79 (92)
T d1t2ma1           2 EPEIITVTLKKQ--NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRT   79 (92)
T ss_dssp             CCEEEEEEEECS--SSCCEEEEEECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSC
T ss_pred             CCeEEEEEEeCC--CccCEEEEeecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcC
Confidence            456777777773  57999999885432 335899999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEeCC
Q psy8436          81 DSHVEIVICRNP   92 (306)
Q Consensus        81 ~~~v~L~v~r~~   92 (306)
                      +..|+|+|.|..
T Consensus        80 ~~~v~L~v~R~g   91 (92)
T d1t2ma1          80 SSVVTLEVAKQG   91 (92)
T ss_dssp             CSEEEEEEEECC
T ss_pred             CCeEEEEEEeCC
Confidence            999999999864

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=6.6e-22  Score=143.22  Aligned_cols=90  Identities=27%  Similarity=0.440  Sum_probs=82.2

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      ....+|+|.|.++.+|||++.++.+.....++||+.|.|+|+|+++|+|++||+||+|||+++.+++|++++++|+++++
T Consensus         9 ~~~~~V~l~k~~~~~lG~~v~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~~   88 (99)
T d1p1da2           9 SGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCED   88 (99)
T ss_dssp             SSCEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTT
T ss_pred             CCcEEEEEEECCCCccCEEEEecCCCCCCCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCCC
Confidence            35678999998889999999988655545689999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeCC
Q psy8436          83 HVEIVICRNP   92 (306)
Q Consensus        83 ~v~L~v~r~~   92 (306)
                      .|+|+|+|..
T Consensus        89 ~v~L~V~r~~   98 (99)
T d1p1da2          89 LVKLKIRKDE   98 (99)
T ss_dssp             CEEEEEECCC
T ss_pred             eEEEEEEeCC
Confidence            9999999864

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=2.3e-21  Score=139.11  Aligned_cols=88  Identities=27%  Similarity=0.454  Sum_probs=80.2

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      ..+.+|.|.| .+++|||+|+++....  .++||+.|.++|||+++|+|++||+|++|||+++.+++|++++.+|+++++
T Consensus         2 ~~i~tV~l~k-~~~~lG~~i~g~~~~~--~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~   78 (95)
T d1n7ea_           2 AIIYTVELKR-YGGPLGITISGTEEPF--DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGE   78 (95)
T ss_dssp             CCEEEEEEEC-TTSCCCEEEECCSSTT--SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCS
T ss_pred             CEEEEEEEEE-CCCcEeEEEEecccCC--CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            4678999998 4679999999886543  679999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeCCC
Q psy8436          83 HVEIVICRNPD   93 (306)
Q Consensus        83 ~v~L~v~r~~~   93 (306)
                      .|+|+|.|...
T Consensus        79 ~v~l~v~r~~~   89 (95)
T d1n7ea_          79 TVTLKIKKQTD   89 (95)
T ss_dssp             EEEEEEECCCC
T ss_pred             eEEEEEEECCC
Confidence            99999998754

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.5e-21  Score=143.28  Aligned_cols=88  Identities=20%  Similarity=0.326  Sum_probs=78.5

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCC------CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGG------AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL   77 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~------~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l   77 (306)
                      +..+|+|.|+. .+|||+|.||...      ....+|||+.|.|+|||+++|+|++||+||+|||+++.+++|++|+++|
T Consensus         8 ~~~~V~l~k~~-~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~l   86 (107)
T d1uhpa_           8 KSLTLVLHRDS-GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAF   86 (107)
T ss_dssp             EEEEEEECCSS-SCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CEEEEEEEECC-CccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHHHH
Confidence            46889999864 6899999998432      2245899999999999999999999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeCC
Q psy8436          78 NNKDSHVEIVICRNP   92 (306)
Q Consensus        78 ~~~~~~v~L~v~r~~   92 (306)
                      +++++.+.|+|.|..
T Consensus        87 k~~~~~v~l~v~r~~  101 (107)
T d1uhpa_          87 KTAKEPIVVQVLRRT  101 (107)
T ss_dssp             HHCCSSEEEEEEECC
T ss_pred             HhCCCcEEEEEEECC
Confidence            999999999999864

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=2.3e-21  Score=140.64  Aligned_cols=91  Identities=25%  Similarity=0.418  Sum_probs=82.2

Q ss_pred             CccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy8436           1 MEKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK   80 (306)
Q Consensus         1 ~~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~   80 (306)
                      |..+.|+|+|.|. ..+|||+|+++...   .|+||..|.++|+|+++|.|++||+|++|||+++.+++|++|+++|+.+
T Consensus         6 ~~~~~r~V~l~k~-~~glG~~i~~~~~~---~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~   81 (102)
T d1tp5a1           6 IPREPRRIVIHRG-STGLGFNIVGGEDG---EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA   81 (102)
T ss_dssp             CCCSCEEEEEECT-TSCCCEEEEECGGG---CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred             CCCCCEEEEEEeC-CCcccEEEEeccCC---CCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcC
Confidence            4567899999995 56999999998654   5899999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEeCCCCC
Q psy8436          81 DSHVEIVICRNPDDA   95 (306)
Q Consensus        81 ~~~v~L~v~r~~~~~   95 (306)
                      ++.++|+|.|.+..+
T Consensus        82 ~~~v~L~v~~~~~~~   96 (102)
T d1tp5a1          82 GQTVTIIAQYKPEEY   96 (102)
T ss_dssp             CSEEEEEEEECHHHH
T ss_pred             CCeEEEEEEECCccc
Confidence            999999999865443

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.4e-22  Score=147.79  Aligned_cols=90  Identities=31%  Similarity=0.492  Sum_probs=81.4

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCC-------cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGA-------HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREA   76 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~-------~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~   76 (306)
                      .+++|.|.|.++++|||+|.||....       ...++||+.|.|+|||+++|+|++||+||+|||++|.+++|++|+++
T Consensus         9 ~~~~V~l~k~~~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~   88 (111)
T d1ujua_           9 GLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQL   88 (111)
T ss_dssp             SSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHH
T ss_pred             CeEEEEEEeCCCCccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHHHH
Confidence            47889999998899999999885432       23589999999999999999999999999999999999999999999


Q ss_pred             HhcCCCeEEEEEEeCCC
Q psy8436          77 LNNKDSHVEIVICRNPD   93 (306)
Q Consensus        77 l~~~~~~v~L~v~r~~~   93 (306)
                      |+++++.|+|+|.|...
T Consensus        89 lk~~~~~v~L~V~r~~~  105 (111)
T d1ujua_          89 LRSVGDTLTVLVCDGFE  105 (111)
T ss_dssp             HSSCSSEEEECCCCCCC
T ss_pred             HHcCCCeEEEEEEECCC
Confidence            99999999999988654

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=4.6e-21  Score=136.25  Aligned_cols=85  Identities=19%  Similarity=0.310  Sum_probs=78.5

Q ss_pred             cccEEEEEEeCCC-CceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           3 KQFKVFRVVKDDS-NELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         3 ~~~~~v~l~r~~~-~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      -+++.|.|.|+.. ++|||+|.++...   .|+||+.|.++|||+++| |++||+|++|||+++.+++|.+++.+|+.++
T Consensus         5 ~e~~~v~l~k~~~~~~~Gf~i~~~~~~---~g~~V~~V~~~g~A~~~g-L~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~   80 (91)
T d1m5za_           5 VELHKVTLYKDSGMEDFGFSVADGLLE---KGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESG   80 (91)
T ss_dssp             CEEEEEEEECCTTCSSSSEEEEECTTS---SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTST
T ss_pred             CceEEEEEEECCCCCceeEEEeccCCC---CCEEEEEECCCChhHhCc-CCCCCEEEEECCEECCCCCHHHHHHHHHCCC
Confidence            3689999999764 6899999988654   589999999999999999 9999999999999999999999999999999


Q ss_pred             CeEEEEEEeC
Q psy8436          82 SHVEIVICRN   91 (306)
Q Consensus        82 ~~v~L~v~r~   91 (306)
                      +.|+|+|.|.
T Consensus        81 ~~v~L~v~R~   90 (91)
T d1m5za_          81 NKLDLVISRN   90 (91)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEEC
Confidence            9999999986

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.1e-21  Score=141.81  Aligned_cols=89  Identities=18%  Similarity=0.308  Sum_probs=80.4

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCC-cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~-~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      .++++|+|.|+. .+|||+|.++.... ...++||+.|.++|||+++|+|++||+||+|||+++.+++|++|+++|++++
T Consensus         7 g~~~~V~l~k~~-~glG~~i~~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~~   85 (110)
T d1um1a_           7 GYVFTVELERGP-SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG   85 (110)
T ss_dssp             CCEEEEEEECCT-TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCC
T ss_pred             CCEEEEEEEECC-CCCCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            468999999965 48999999985432 2358999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEeCC
Q psy8436          82 SHVEIVICRNP   92 (306)
Q Consensus        82 ~~v~L~v~r~~   92 (306)
                      ..|+|+|.|..
T Consensus        86 ~~v~l~v~r~~   96 (110)
T d1um1a_          86 KKMRFLVAKSD   96 (110)
T ss_dssp             SEEEEEEECCC
T ss_pred             CeEEEEEEeCC
Confidence            99999998864

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=4.7e-21  Score=138.83  Aligned_cols=88  Identities=28%  Similarity=0.407  Sum_probs=77.6

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCC------CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGG------AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL   77 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~------~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l   77 (306)
                      +.++|+|.|.. .+|||+|.+....      ....+|||..|.|+|||+++|+|++||+||+|||+++.+++|++|+.+|
T Consensus         4 ~~~~V~L~k~~-~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~l   82 (99)
T d1ozia_           4 DTFEVELAKTD-GSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETL   82 (99)
T ss_dssp             CEEEEEEECCS-SSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             CEEEEEEEECC-CCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHHHH
Confidence            56899999964 5899999865321      1235799999999999999999999999999999999999999999999


Q ss_pred             hcCCCeEEEEEEeCC
Q psy8436          78 NNKDSHVEIVICRNP   92 (306)
Q Consensus        78 ~~~~~~v~L~v~r~~   92 (306)
                      ++++..|+|+|.|..
T Consensus        83 k~~~~~v~L~v~R~~   97 (99)
T d1ozia_          83 RNTGQVVHLLLEKGQ   97 (99)
T ss_dssp             HHSCSEEEEEEECCC
T ss_pred             HCCCCeEEEEEEeCC
Confidence            999999999999863

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.3e-20  Score=135.83  Aligned_cols=89  Identities=29%  Similarity=0.472  Sum_probs=79.9

Q ss_pred             CccccEEEEEEeCCCCceeEEEEecCCCC----cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy8436           1 MEKQFKVFRVVKDDSNELGIYIERQDGGA----HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREA   76 (306)
Q Consensus         1 ~~~~~~~v~l~r~~~~~lG~~i~gg~~~~----~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~   76 (306)
                      +|.+..+|.|.|. ..+|||+|.++....    ...|+||+.|.++|||+++| |++||+|++|||+++.+++|.+|+.+
T Consensus         5 ~~~~~~~v~l~k~-~~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~   82 (97)
T d1x5qa1           5 IEEEELTLTILRQ-TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEA   82 (97)
T ss_dssp             CCCEEEEEEEECS-SSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             cCCeEEEEEEEeC-CCeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhc-ccCCCEEEEECCEECCCCCHHHHHHH
Confidence            4678889999995 568999999985432    23589999999999999999 99999999999999999999999999


Q ss_pred             HhcCCCeEEEEEEeC
Q psy8436          77 LNNKDSHVEIVICRN   91 (306)
Q Consensus        77 l~~~~~~v~L~v~r~   91 (306)
                      |++++..|+|+|.|.
T Consensus        83 l~~~~~~v~l~v~R~   97 (97)
T d1x5qa1          83 LRGAGTAVQMRVWRE   97 (97)
T ss_dssp             HHSCCSEEEEEEEEC
T ss_pred             HhCCCCEEEEEEEEC
Confidence            999999999999984

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7e-21  Score=144.83  Aligned_cols=86  Identities=28%  Similarity=0.499  Sum_probs=78.1

Q ss_pred             ccceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       218 ~~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      ....++|+|.|..  .+|||+|.||.+...+..||||..|.++|+|+++|+|++||+||+|||+++.+++|+||+++||+
T Consensus        27 ~~~~~~V~l~k~~--~glG~~i~gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~  104 (130)
T d1i16a_          27 EATVCTVTLEKMS--AGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKA  104 (130)
T ss_dssp             SEEEEEEEEETTS--SSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHT
T ss_pred             CCeEEEEEEEeCC--CccCEEEeeccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHc
Confidence            3557889999985  57999999999887777899999999999999999999999999999999999999999999999


Q ss_pred             cCCCceec
Q psy8436         298 IFPQSSKL  305 (306)
Q Consensus       298 ~~~~~~~l  305 (306)
                      ++...++|
T Consensus       105 ~~~~~v~l  112 (130)
T d1i16a_         105 LPDGPVTI  112 (130)
T ss_dssp             SCSSEEEE
T ss_pred             CCCCeEEE
Confidence            98876655

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7e-21  Score=133.26  Aligned_cols=82  Identities=21%  Similarity=0.462  Sum_probs=72.7

Q ss_pred             EEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe--E
Q psy8436           7 VFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH--V   84 (306)
Q Consensus         7 ~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~--v   84 (306)
                      .|.|.|.++++|||+|.++..+...+++||++|.|+|||+++|+|++||+|++|||+++.+++|++|+++|++++..  +
T Consensus         1 eV~l~k~~g~~LGi~i~~~~~~~~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~v   80 (85)
T d1x45a1           1 DVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRV   80 (85)
T ss_dssp             EEEEECCTTSCCCEEEECCTTTSSSCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEE
T ss_pred             CeEEEeCCCCccCEEEEeCCCCCCCCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEE
Confidence            47899999999999998765555557899999999999999999999999999999999999999999999998654  5


Q ss_pred             EEEE
Q psy8436          85 EIVI   88 (306)
Q Consensus        85 ~L~v   88 (306)
                      +|.|
T Consensus        81 ~L~V   84 (85)
T d1x45a1          81 KLNI   84 (85)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=6.6e-21  Score=139.24  Aligned_cols=89  Identities=22%  Similarity=0.375  Sum_probs=78.5

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCC----cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGA----HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN   79 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~----~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~   79 (306)
                      ..++|.|.|. ..+|||+|.|+....    ...++||+.|.|+|||+++|+|++||+||+|||++|.+++|++|+.+|++
T Consensus         7 ~~~~v~l~k~-~~glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~   85 (105)
T d1whaa_           7 GRHVACLARS-ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTA   85 (105)
T ss_dssp             EEEEEEECCC-TTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTS
T ss_pred             CCEEEEEEEC-CCccCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHc
Confidence            3578888885 558999999985432    23589999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEEeCCC
Q psy8436          80 KDSHVEIVICRNPD   93 (306)
Q Consensus        80 ~~~~v~L~v~r~~~   93 (306)
                      +++.|+|+|.|...
T Consensus        86 ~~~~v~l~v~R~~~   99 (105)
T d1whaa_          86 ASPTIALLLEREAG   99 (105)
T ss_dssp             CCSCEEEEEEECCC
T ss_pred             CCCeEEEEEEECCC
Confidence            99999999999753

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.7e-20  Score=133.10  Aligned_cols=83  Identities=20%  Similarity=0.339  Sum_probs=76.4

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV   84 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v   84 (306)
                      -|+|.|.|+. .+|||+|.++...   .++||..|.|+|||+++| |++||+|++|||+++.+++|++++++|+++++.+
T Consensus         4 Pr~v~l~k~~-~g~Gf~i~~~~~~---~~~~V~~V~~g~~A~~aG-l~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~~~v   78 (91)
T d1g9oa_           4 PRLCCLEKGP-NGYGFHLHGEKGK---LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAV   78 (91)
T ss_dssp             CEEEEEECBT-TBCCEEEEECTTC---SSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEE
T ss_pred             CEEEEEEECC-CeeeEEEEecCCC---CCEEEEEEcCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            4889999975 5899999988655   589999999999999999 9999999999999999999999999999999999


Q ss_pred             EEEEEeCC
Q psy8436          85 EIVICRNP   92 (306)
Q Consensus        85 ~L~v~r~~   92 (306)
                      +|+|.+..
T Consensus        79 ~L~v~~~~   86 (91)
T d1g9oa_          79 RLLVVDPE   86 (91)
T ss_dssp             EEEEECCC
T ss_pred             EEEEECCC
Confidence            99998754

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=9e-21  Score=138.28  Aligned_cols=85  Identities=21%  Similarity=0.330  Sum_probs=77.1

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      ...|+|.|.|+++.+|||+|.++....  .|+||..|.++|||+++| |++||+||+|||+++.+++|++|+.+|+++. 
T Consensus        14 ~~pr~V~l~r~~~~~lGf~i~gg~~~~--~gi~V~~V~~~s~A~~~G-L~~GD~Il~VNg~~v~~~~~~ev~~llk~~~-   89 (104)
T d1wi2a_          14 FLPRIVTLKKPPGAQLGFNIRGGKASQ--LGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTAR-   89 (104)
T ss_dssp             SCCEEEEECCCTTCCCSEEEECCSSSC--CCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHHSS-
T ss_pred             CcCEEEEEEeCCCCCcceEEEccccCC--CCEEEEEECCCChhHhcc-cccCCEEEEECCEECCCCCHHHHHHHHhcCC-
Confidence            356899999988889999999986543  689999999999999999 9999999999999999999999999999985 


Q ss_pred             eEEEEEEeC
Q psy8436          83 HVEIVICRN   91 (306)
Q Consensus        83 ~v~L~v~r~   91 (306)
                      .++|+|+|.
T Consensus        90 ~v~l~V~~~   98 (104)
T d1wi2a_          90 EISMRVRFF   98 (104)
T ss_dssp             SEEEEEECC
T ss_pred             eEEEEEEEC
Confidence            689999764

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.4e-20  Score=140.11  Aligned_cols=89  Identities=21%  Similarity=0.326  Sum_probs=79.4

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      .+.++|.|.|+++++|||+|.||.+..  .|+||+.|.|+|||+++| |++||+||+|||++|.+++|++|+++|++++ 
T Consensus        19 ~~~~~v~l~~~~~~~lGf~i~gg~~~~--~gv~V~~V~~g~~A~~~g-L~~GD~Il~INg~~v~~~s~~evv~~lr~~~-   94 (128)
T d1uf1a_          19 GDEKKVNLVLGDGRSLGLTIRGGAEYG--LGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSSR-   94 (128)
T ss_dssp             SSEEEEEEECCSSCCCCEEEECCTTTT--CCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCS-
T ss_pred             CCeEEEEEEECCCCccCEEEEeeccCC--CCEEEEEECCCChHHhcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC-
Confidence            356899999998899999999986543  689999999999999999 9999999999999999999999999999874 


Q ss_pred             eEEEEEEeCCCCC
Q psy8436          83 HVEIVICRNPDDA   95 (306)
Q Consensus        83 ~v~L~v~r~~~~~   95 (306)
                      .+.|+|.+.....
T Consensus        95 ~v~l~v~~~~~~p  107 (128)
T d1uf1a_          95 HLILTVKDVGRLP  107 (128)
T ss_dssp             EEEEEEECCSCCS
T ss_pred             cEEEEEEECCcCC
Confidence            7899998765443

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=9.4e-21  Score=139.04  Aligned_cols=88  Identities=22%  Similarity=0.327  Sum_probs=77.3

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      +.++.|.|.|.++++|||+|.||.+.. ..++||+.|.+||||+++|+|++||+|++|||+++.+++|++|+.+|+.++.
T Consensus         7 ~~~~~v~l~k~~~~~lG~~i~gg~~~~-~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~   85 (107)
T d1x6da1           7 DGIHVTILHKEEGAGLGFSLAGGADLE-NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQARE   85 (107)
T ss_dssp             TTEEEEEEECCTTSCCSEEEECCSSSS-CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTS
T ss_pred             CCcEEEEEEcCCCCccCEEEeeccCCC-CCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCC
Confidence            368999999998999999999885431 2589999999999999999999999999999999999999999999999977


Q ss_pred             eEEEEEEeC
Q psy8436          83 HVEIVICRN   91 (306)
Q Consensus        83 ~v~L~v~r~   91 (306)
                      .+.+++.+.
T Consensus        86 ~~~l~v~~r   94 (107)
T d1x6da1          86 PRQAVIVTR   94 (107)
T ss_dssp             SSEEEEEEE
T ss_pred             CEEEEEEEC
Confidence            666665543

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.2e-20  Score=133.30  Aligned_cols=82  Identities=23%  Similarity=0.468  Sum_probs=76.4

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV   84 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v   84 (306)
                      -|.|.|.|+++++|||+|.++..    .++||..|.++|||+++|+|++||+|++|||+++.+++|++|+++|+++++.|
T Consensus         2 ~R~V~l~k~~~~~lG~~l~~~~~----~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v   77 (88)
T d1kwaa_           2 SRLVQFQKNTDEPMGITLKMNEL----NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSI   77 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEECSCG----GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEE
T ss_pred             cEEEEEEeCCCCCccEEEEEcCC----CCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCCCcE
Confidence            48999999999999999987644    47999999999999999999999999999999999999999999999998899


Q ss_pred             EEEEEe
Q psy8436          85 EIVICR   90 (306)
Q Consensus        85 ~L~v~r   90 (306)
                      +|+|..
T Consensus        78 ~L~i~p   83 (88)
T d1kwaa_          78 TFKIVP   83 (88)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999973

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=7.1e-21  Score=134.47  Aligned_cols=85  Identities=29%  Similarity=0.460  Sum_probs=75.8

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCc-CCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAH-FSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~-~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      ++|+|+|.|++ .+|||+|.++.+..+ ..++||..|.++|+|+++|.|++||+|++|||+++.+++|++|+++|+++++
T Consensus         2 ~~~~V~l~K~~-~~lG~~i~~g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~   80 (88)
T d2fnea1           2 QCKSITLERGP-DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKG   80 (88)
T ss_dssp             EEEEEEECCBT-TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             eEEEEEEEeCC-CccCEEEEeccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            47899999965 589999998744322 2479999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEE
Q psy8436          83 HVEIVIC   89 (306)
Q Consensus        83 ~v~L~v~   89 (306)
                      .++|+|.
T Consensus        81 ~v~L~Vl   87 (88)
T d2fnea1          81 TVTLMVL   87 (88)
T ss_dssp             SEEEEEE
T ss_pred             cEEEEEE
Confidence            9999985

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=9.3e-21  Score=144.11  Aligned_cols=92  Identities=28%  Similarity=0.362  Sum_probs=80.0

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCc-CCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAH-FSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK   80 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~-~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~   80 (306)
                      +.++++|.|.|. .++|||+|.||.+..+ ..+|||+.|.+||+|+++|+|++||+||+|||+++.+++|++|+++||.+
T Consensus        27 ~~~~~~V~l~k~-~~glG~~i~gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~  105 (130)
T d1i16a_          27 EATVCTVTLEKM-SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL  105 (130)
T ss_dssp             SEEEEEEEEETT-SSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTS
T ss_pred             CCeEEEEEEEeC-CCccCEEEeeccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcC
Confidence            456788999995 4589999999865432 25799999999999999999999999999999999999999999999998


Q ss_pred             CC-eEEEEEEeCCCC
Q psy8436          81 DS-HVEIVICRNPDD   94 (306)
Q Consensus        81 ~~-~v~L~v~r~~~~   94 (306)
                      +. .|+|+|+|....
T Consensus       106 ~~~~v~l~v~r~~~~  120 (130)
T d1i16a_         106 PDGPVTIVIRRKSLQ  120 (130)
T ss_dssp             CSSEEEEEEEEESSC
T ss_pred             CCCeEEEEEEcCCCC
Confidence            65 899999987543

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.9e-20  Score=137.44  Aligned_cols=90  Identities=17%  Similarity=0.269  Sum_probs=80.9

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCc-----CCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAH-----FSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALN   78 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~-----~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~   78 (306)
                      +.+.|.|.|.++++|||+|.++....+     ..++||..|.|+|||+++|.|++||+|++|||++|.+++|++++++|+
T Consensus        10 ~~~~V~l~r~~~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~   89 (114)
T d1uewa_          10 QTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIK   89 (114)
T ss_dssp             CCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHH
T ss_pred             eeEEEEEEeCCCCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHHH
Confidence            568899999999999999998854321     247999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCCC
Q psy8436          79 NKDSHVEIVICRNPD   93 (306)
Q Consensus        79 ~~~~~v~L~v~r~~~   93 (306)
                      +++..|+|+|.|...
T Consensus        90 ~~~~~v~l~V~r~~~  104 (114)
T d1uewa_          90 DAGLSVTLRIIPQEE  104 (114)
T ss_dssp             HTTTEEEEEECCCSC
T ss_pred             cCCCeEEEEEEeCCC
Confidence            999999999988654

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-20  Score=132.23  Aligned_cols=82  Identities=15%  Similarity=0.273  Sum_probs=73.6

Q ss_pred             EEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEE
Q psy8436           6 KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVE   85 (306)
Q Consensus         6 ~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~   85 (306)
                      ++|+|.+  +.+|||+|.++.+..  .++||..|.++|||+++| |++||+|++|||+++.+++|++++++|+++++.|+
T Consensus         3 ~~V~l~~--~~~~Gf~i~gg~~~~--~~v~V~~v~~gs~A~~~~-L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~~v~   77 (85)
T d1rgwa_           3 YSVTLTG--PGPWGFRLQGGKDFN--MPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLS   77 (85)
T ss_dssp             EEEEECC--SSCCCEEECCCGGGT--SCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEE
T ss_pred             EEEEecC--CCCCCEEEEeecCCC--CCEEEEEecCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEE
Confidence            5677765  578999999986543  679999999999999877 99999999999999999999999999999999999


Q ss_pred             EEEEeCC
Q psy8436          86 IVICRNP   92 (306)
Q Consensus        86 L~v~r~~   92 (306)
                      |+|.|..
T Consensus        78 L~V~R~~   84 (85)
T d1rgwa_          78 LTLQKSK   84 (85)
T ss_dssp             EEEESCC
T ss_pred             EEEEECC
Confidence            9999864

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=2.8e-20  Score=133.51  Aligned_cols=87  Identities=29%  Similarity=0.502  Sum_probs=75.7

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-   80 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-   80 (306)
                      +.+++++.+.+.  .+|||+|.||.+.....++||+.|.|+|+|+++|+|++||+|++|||+++.+++|++|+++|+++ 
T Consensus         6 ~~~~~~v~~~~~--~glG~~i~gg~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~   83 (96)
T d1wi4a1           6 DPAFRVITVTKE--TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAK   83 (96)
T ss_dssp             CTTEEEEEECCS--SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSC
T ss_pred             CCcEEEEEecCC--CccCEEEEeccCCCCCCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence            346777777773  47999999997665567899999999999999999999999999999999999999999999987 


Q ss_pred             ---CCeEEEEEEe
Q psy8436          81 ---DSHVEIVICR   90 (306)
Q Consensus        81 ---~~~v~L~v~r   90 (306)
                         ...+.|.+.|
T Consensus        84 ~~~~~~vel~~~R   96 (96)
T d1wi4a1          84 LRSESPWEIAFIR   96 (96)
T ss_dssp             CSSSSCEEEEEEC
T ss_pred             CCCCCeEEEEEEC
Confidence               3568888765

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-19  Score=135.83  Aligned_cols=90  Identities=20%  Similarity=0.332  Sum_probs=79.9

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-   80 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-   80 (306)
                      +-++..|.|.|. ..+|||+|.++....  .++||+.|.++|+|+++|+|++||+|++|||++|.+++|++|+++|+.+ 
T Consensus        17 ~~~~~~v~l~k~-~~glG~~i~gg~~~~--~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~   93 (123)
T d1ueqa_          17 KGTFLSTTLKKS-NMGFGFTIIGGDEPD--EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVP   93 (123)
T ss_dssp             CSEEEEEEEECC-TTSCSEEEECCSSSS--CCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSC
T ss_pred             CCeEEEEEEEEC-CCeeCEEEEeecCCC--CCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            456788999885 568999999986643  6899999999999999999999999999999999999999999999998 


Q ss_pred             -CCeEEEEEEeCCCC
Q psy8436          81 -DSHVEIVICRNPDD   94 (306)
Q Consensus        81 -~~~v~L~v~r~~~~   94 (306)
                       +..|.|+|.|....
T Consensus        94 ~g~~v~L~v~R~~~~  108 (123)
T d1ueqa_          94 IGQSVNLVLCRGYPL  108 (123)
T ss_dssp             TTCEEEEEEEESCCC
T ss_pred             CCCEEEEEEEcCCCC
Confidence             46799999997544

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.6e-20  Score=132.51  Aligned_cols=85  Identities=24%  Similarity=0.393  Sum_probs=73.3

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCC------cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGA------HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALN   78 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~------~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~   78 (306)
                      .++|.|.+..+.+|||+|.|+....      ...||||+.|.|+|||++  +|++||+||+|||+++.+++|++|+++|+
T Consensus        10 ~~~v~v~~~~~~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~--~L~~GD~Il~VNg~~v~~~t~~eav~~l~   87 (103)
T d2h3la1          10 KQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLK   87 (103)
T ss_dssp             EEEEEEEEECSSSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTT--TCCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             cEEEEEEEccCCCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHh--ccCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4556666666778999999995332      235899999999999975  49999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeC
Q psy8436          79 NKDSHVEIVICRN   91 (306)
Q Consensus        79 ~~~~~v~L~v~r~   91 (306)
                      ++++.++|+|.|.
T Consensus        88 ~~~~~v~L~V~R~  100 (103)
T d2h3la1          88 TFQNTVELIIVRE  100 (103)
T ss_dssp             HCCSEEEEEEEEE
T ss_pred             hCCCeEEEEEEEE
Confidence            9999999999985

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=4.4e-20  Score=136.86  Aligned_cols=81  Identities=28%  Similarity=0.468  Sum_probs=73.1

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV   84 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v   84 (306)
                      +.+|.|.|+..++|||+|.++.+.   .++||+.|.++|||+++|+|++||+|++|||+++.+++|++|+.+|+.++..+
T Consensus         2 i~~V~l~k~~~~glG~~i~~~~~~---~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~~   78 (112)
T d1qaua_           2 VISVRLFKRKVGGLGFLVKERVSK---PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASET   78 (112)
T ss_dssp             EEEEEEECBTTTBTSEEEEECSSS---SCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSS
T ss_pred             eEEEEEEECCCCcEeEEEEeecCC---CCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCCc
Confidence            678999999999999999988655   58999999999999999999999999999999999999999999999986654


Q ss_pred             EEEE
Q psy8436          85 EIVI   88 (306)
Q Consensus        85 ~L~v   88 (306)
                      .|++
T Consensus        79 ~~~l   82 (112)
T d1qaua_          79 HVVL   82 (112)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=1.1e-19  Score=132.81  Aligned_cols=87  Identities=17%  Similarity=0.298  Sum_probs=77.7

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCC----------cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHH
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGA----------HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA   73 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~----------~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a   73 (306)
                      +-++|.|.|.++++|||+|.++....          ...++||..|.++|||+++| |++||+|++|||+++.+++|+++
T Consensus         5 ~~~tV~l~r~~~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aG-L~~GD~Il~INg~~v~~~~h~ev   83 (104)
T d1q3oa_           5 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQV   83 (104)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHH
T ss_pred             ceEEEEEEECCCCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEcCeEcCCCCHHHH
Confidence            45789999999999999999885432          12368999999999999999 99999999999999999999999


Q ss_pred             HHHHhcCCCeEEEEEEeC
Q psy8436          74 REALNNKDSHVEIVICRN   91 (306)
Q Consensus        74 ~~~l~~~~~~v~L~v~r~   91 (306)
                      +.+|++++..|+|+|.+.
T Consensus        84 v~~ik~~~~~v~L~V~~~  101 (104)
T d1q3oa_          84 VNMIRQGGNTLMVKVVMV  101 (104)
T ss_dssp             HHHHHHTTTEEEEEEEEE
T ss_pred             HHHHHcCCCeEEEEEEec
Confidence            999999999999999874

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.1e-19  Score=135.22  Aligned_cols=88  Identities=26%  Similarity=0.382  Sum_probs=79.2

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      ..++|+|.|.|. ..+|||+|.++..    .|+||+.|.++|||+++| |++||+||+|||++|.+++|++|+.+|+.++
T Consensus        17 ~~~~r~v~l~k~-~~glG~~i~gg~~----~gi~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~   90 (117)
T d1uita_          17 VEEPRHVKVQKG-SEPLGISIVSGEK----GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQC   90 (117)
T ss_dssp             SCCCEEEEEECS-SCCCCEEEEECTT----SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSCC
T ss_pred             CCCCEEEEEEeC-CCccCEEEEccCC----CCEEEEEEecCChHHhCC-CCCCCEeeeECCcccCCCCHHHHHHHHHCCC
Confidence            357899999995 5689999998865    479999999999999998 9999999999999999999999999999999


Q ss_pred             CeEEEEEEeCCCCC
Q psy8436          82 SHVEIVICRNPDDA   95 (306)
Q Consensus        82 ~~v~L~v~r~~~~~   95 (306)
                      +.|+|+|.|....+
T Consensus        91 ~~v~l~v~~~p~~~  104 (117)
T d1uita_          91 DTITILAQYNPHVH  104 (117)
T ss_dssp             SEEEEEECCCSCCC
T ss_pred             CeEEEEEEECCcce
Confidence            99999998765443

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=9.7e-20  Score=133.48  Aligned_cols=81  Identities=38%  Similarity=0.573  Sum_probs=71.7

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCC-----CCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSP-----KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIA  293 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~-----~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~  293 (306)
                      .+.++|+|.|..  .+|||+|.||.+..     ....|+||.+|.++|+|+++|+|++||+||+|||+++.+++|+||++
T Consensus         7 g~~~~V~l~k~~--~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~   84 (107)
T d1uhpa_           7 GKSLTLVLHRDS--GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVE   84 (107)
T ss_dssp             SEEEEEEECCSS--SCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHH
T ss_pred             CCEEEEEEEECC--CccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHH
Confidence            567899999885  58999999987643     12468999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCC
Q psy8436         294 MFKDIFPQ  301 (306)
Q Consensus       294 ~Lk~~~~~  301 (306)
                      +||+++..
T Consensus        85 ~lk~~~~~   92 (107)
T d1uhpa_          85 AFKTAKEP   92 (107)
T ss_dssp             HHHHCCSS
T ss_pred             HHHhCCCc
Confidence            99997654

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=7.6e-20  Score=130.30  Aligned_cols=83  Identities=27%  Similarity=0.517  Sum_probs=72.4

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .+.++|++.+.   .+|||+|.++.+...+..|+||+.|.++|+|+++|+|++||+|++|||+++.+++|+||+++|+++
T Consensus         3 pei~~v~l~~~---~glG~~i~g~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~   79 (92)
T d1t2ma1           3 PEIITVTLKKQ---NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRT   79 (92)
T ss_dssp             CEEEEEEEECS---SSCCEEEEEECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSC
T ss_pred             CeEEEEEEeCC---CccCEEEEeecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcC
Confidence            45677888776   469999999888766667999999999999999999999999999999999999999999999987


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      + ..+.|
T Consensus        80 ~-~~v~L   85 (92)
T d1t2ma1          80 S-SVVTL   85 (92)
T ss_dssp             C-SEEEE
T ss_pred             C-CeEEE
Confidence            5 44444

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.1e-19  Score=129.59  Aligned_cols=82  Identities=35%  Similarity=0.646  Sum_probs=71.7

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCC--CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~--~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .++|+|.|.+  .+|||+|.|+.+...  +..|+||+.|.++|||+++|+|++||+|++|||+++.+++|+||+++||++
T Consensus         2 v~~V~L~k~~--~glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~   79 (92)
T d2fe5a1           2 IMEVNLLKGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT   79 (92)
T ss_dssp             EEEEEEECCT--TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC
T ss_pred             EEEEEEEECC--CccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcC
Confidence            4689999975  689999999876543  346899999999999999999999999999999999999999999999987


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      +. .++|
T Consensus        80 ~~-~v~L   85 (92)
T d2fe5a1          80 SD-MVYL   85 (92)
T ss_dssp             CS-EEEE
T ss_pred             CC-EEEE
Confidence            54 4544

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.81  E-value=7.8e-20  Score=131.66  Aligned_cols=87  Identities=25%  Similarity=0.428  Sum_probs=75.8

Q ss_pred             ccEEEEEEeCC-CCceeEEEEecCCC-------CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy8436           4 QFKVFRVVKDD-SNELGIYIERQDGG-------AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEARE   75 (306)
Q Consensus         4 ~~~~v~l~r~~-~~~lG~~i~gg~~~-------~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~   75 (306)
                      ..|+|.|.|.. ..+|||+|.++...       ....|+||+.|.|+|||+++|.|++||+|++|||+++.+++|++|+.
T Consensus         2 ~~r~V~L~k~~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~   81 (98)
T d1rzxa_           2 THRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTD   81 (98)
T ss_dssp             CCEEEEEECCCSSSCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             CcEEEEEEECCCCCcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHH
Confidence            45788888874 46899999988421       12347999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCeEEEEEEe
Q psy8436          76 ALNNKDSHVEIVICR   90 (306)
Q Consensus        76 ~l~~~~~~v~L~v~r   90 (306)
                      +|+.+++.|+|+|..
T Consensus        82 ~l~~~~~~v~l~v~p   96 (98)
T d1rzxa_          82 MMVANSSNLIITVKP   96 (98)
T ss_dssp             HHHHTCTEEEEEEEC
T ss_pred             HHHcCCCeEEEEEEe
Confidence            999999999999864

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=8.2e-20  Score=130.58  Aligned_cols=82  Identities=34%  Similarity=0.605  Sum_probs=71.7

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCC--CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~--~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      +.+|+|.|++  .+|||+|.||.+.+.  ...|+||.+|.++|+|+++|+|++||+|++|||+++.+++|++|+++|+++
T Consensus         2 ~~~V~l~k~~--~glG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~   79 (93)
T d1rgra_           2 YEEITLERGN--SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA   79 (93)
T ss_dssp             EEEEEEECCS--SCCSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHT
T ss_pred             CEEEEEEeCC--CcCCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcC
Confidence            5689999974  689999999887653  346899999999999999999999999999999999999999999999986


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      + ..+.|
T Consensus        80 ~-~~v~L   85 (93)
T d1rgra_          80 G-SIVRL   85 (93)
T ss_dssp             T-TEEEE
T ss_pred             C-CEEEE
Confidence            5 44544

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.6e-20  Score=131.53  Aligned_cols=83  Identities=48%  Similarity=0.829  Sum_probs=72.8

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      ++++|+|.|.+  .+|||+|.++.+...+..++||..|.++|+|+++|.|++||+|++|||+++.+++|++|+++||+++
T Consensus         2 ~~~~V~l~K~~--~~lG~~i~~g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~   79 (88)
T d2fnea1           2 QCKSITLERGP--DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK   79 (88)
T ss_dssp             EEEEEEECCBT--TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             eEEEEEEEeCC--CccCEEEEeccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            46789998875  5799999988776655578999999999999999999999999999999999999999999999975


Q ss_pred             CCceec
Q psy8436         300 PQSSKL  305 (306)
Q Consensus       300 ~~~~~l  305 (306)
                      + .++|
T Consensus        80 ~-~v~L   84 (88)
T d2fnea1          80 G-TVTL   84 (88)
T ss_dssp             S-SEEE
T ss_pred             C-cEEE
Confidence            4 4443

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.2e-19  Score=133.77  Aligned_cols=81  Identities=26%  Similarity=0.504  Sum_probs=74.4

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .+.++|+|.|..  .+|||+|.++.+...+..++||..|.++|+|+++|+|++||+||+|||+++.+++|+||+++||++
T Consensus         7 g~~~~V~l~k~~--~glG~~i~~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~   84 (110)
T d1um1a_           7 GYVFTVELERGP--SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHG   84 (110)
T ss_dssp             CCEEEEEEECCT--TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTC
T ss_pred             CCEEEEEEEECC--CCCCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            568999999986  579999999988777677999999999999999999999999999999999999999999999998


Q ss_pred             CCC
Q psy8436         299 FPQ  301 (306)
Q Consensus       299 ~~~  301 (306)
                      +..
T Consensus        85 ~~~   87 (110)
T d1um1a_          85 GKK   87 (110)
T ss_dssp             CSE
T ss_pred             CCe
Confidence            643

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.2e-19  Score=135.22  Aligned_cols=88  Identities=23%  Similarity=0.380  Sum_probs=79.7

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV   84 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v   84 (306)
                      .+.|.|.|.++.+|||+|+++.... ..++||..|.|+|+|+++|+|++||+||+|||++|.+++|++++.+|++++..|
T Consensus        16 p~~V~l~k~~~~~lGi~i~~~~~~~-~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~~~v   94 (117)
T d1v62a_          16 PLMVEIVKTPGSALGISLTTTSLRN-KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKV   94 (117)
T ss_dssp             SEEEEEECCTTCCCCCEEEEECCSS-SCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEE
T ss_pred             CEEEEEEcCCCCCcCEEEEeeccCC-CCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcCCCcE
Confidence            4779999988889999999885432 368999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCC
Q psy8436          85 EIVICRNPD   93 (306)
Q Consensus        85 ~L~v~r~~~   93 (306)
                      +|+|.+...
T Consensus        95 ~l~v~~~~~  103 (117)
T d1v62a_          95 RLEILPVPQ  103 (117)
T ss_dssp             EEEECCBTT
T ss_pred             EEEEEECCC
Confidence            999987654

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.3e-20  Score=134.38  Aligned_cols=85  Identities=25%  Similarity=0.362  Sum_probs=74.8

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC--C
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD--S   82 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~--~   82 (306)
                      ..+|+|.|. ..+|||+|.++....  .++||+.|.++|||+++|+|++||+||+|||++|.+++|++|+++|+.++  .
T Consensus        10 ~~~V~l~k~-~~glG~~i~gg~~~~--~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~   86 (103)
T d1uepa_          10 ELDVHLRRM-ESGFGFRILGGDEPG--QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNG   86 (103)
T ss_dssp             EECCEEESS-SSSCCEEECCCCSTT--SCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEEEEeC-CceEeEEEEecccCC--CcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence            456788885 568999999886543  57999999999999999999999999999999999999999999999873  4


Q ss_pred             eEEEEEEeCC
Q psy8436          83 HVEIVICRNP   92 (306)
Q Consensus        83 ~v~L~v~r~~   92 (306)
                      .|+|+|.|..
T Consensus        87 ~v~l~v~r~~   96 (103)
T d1uepa_          87 QVNLTVRRKV   96 (103)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEeCC
Confidence            7999998864

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.7e-20  Score=126.72  Aligned_cols=77  Identities=18%  Similarity=0.314  Sum_probs=71.5

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      +.|+|+|.|+..++|||+|.+         .+|..|.++|||+++| |++||+|++|||+++.+++|++++.+|+++++.
T Consensus         4 ~pr~V~l~k~~~g~~Gf~i~~---------g~V~~v~~g~~A~~~G-l~~GD~Il~INg~~v~~~t~~~~~~ll~~~~~~   73 (82)
T d1r6ja_           4 DPRTITMHKDSTGHVGFIFKN---------GKITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTV   73 (82)
T ss_dssp             CCEEEEEECCTTSCCCEEEET---------TEEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSE
T ss_pred             CCEEEEEEeCCCCCcCEEEEE---------EEEEEECCCChHHhcC-cCCCCEEEEeCCeEEeeCCHHHHHHHHHcCCCE
Confidence            569999999887789999973         3699999999999999 999999999999999999999999999999999


Q ss_pred             EEEEEEe
Q psy8436          84 VEIVICR   90 (306)
Q Consensus        84 v~L~v~r   90 (306)
                      |+|+|..
T Consensus        74 v~l~v~p   80 (82)
T d1r6ja_          74 VTITIMP   80 (82)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEc
Confidence            9999863

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.6e-20  Score=136.57  Aligned_cols=89  Identities=19%  Similarity=0.353  Sum_probs=80.8

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      +.++.+|+|.|. ..+|||+|.++.+..  .++||+.|.++|+|+++|.|++||+|++|||+++.+++|++|+++|++++
T Consensus         9 ~~e~~~v~l~k~-~~glG~~i~gg~~~~--~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~~   85 (103)
T d1wfva_           9 DFDYFTVDMEKG-AKGFGFSIRGGREYK--MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGG   85 (103)
T ss_dssp             CSCCEECCEECC-TTSSSBCCEEETTTT--EEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHC
T ss_pred             CceEEEEEEEeC-CCccCEEEEeeccCC--CCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCC
Confidence            467889999995 468999999987654  57999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEeCCC
Q psy8436          82 SHVEIVICRNPD   93 (306)
Q Consensus        82 ~~v~L~v~r~~~   93 (306)
                      ..|+|+|.|...
T Consensus        86 ~~v~l~v~R~~~   97 (103)
T d1wfva_          86 RRVRLLLKRGTG   97 (103)
T ss_dssp             SEECEEEECTTC
T ss_pred             CEEEEEEEECCC
Confidence            999999998653

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.2e-19  Score=130.46  Aligned_cols=83  Identities=31%  Similarity=0.539  Sum_probs=67.7

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCC------CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPK------GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM  294 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~------~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~  294 (306)
                      +++|+|.|.++ .+|||+|.||.+...      ...|+||.+|.++|||+++|+|++||+|++|||+++.+++|+||+++
T Consensus         2 pr~V~l~k~~~-~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~   80 (96)
T d2fcfa1           2 PRRVELWREPS-KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA   80 (96)
T ss_dssp             CEEEEECCCC--CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CEEEEEEeCCC-CCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHH
Confidence            46899999874 789999998865321      13589999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCceec
Q psy8436         295 FKDIFPQSSKL  305 (306)
Q Consensus       295 Lk~~~~~~~~l  305 (306)
                      ||+++. .+.|
T Consensus        81 lk~~~~-~v~L   90 (96)
T d2fcfa1          81 IRKAGN-PVVF   90 (96)
T ss_dssp             HHTCCS-SEEE
T ss_pred             HHcCCC-eEEE
Confidence            998754 4443

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.8e-19  Score=130.08  Aligned_cols=82  Identities=26%  Similarity=0.486  Sum_probs=76.3

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS   82 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~   82 (306)
                      ..+++|.|.|..+.+|||+|.++.     .++||+.|.++|+|+++|.|++||+|++|||+++.+++|++|+++|+.+++
T Consensus        17 ~~i~~V~l~k~~~~~lG~~v~~~~-----~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~   91 (100)
T d1va8a1          17 ETVKIVRIEKARDIPLGATVRNEM-----DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHG   91 (100)
T ss_dssp             EECEEEEEEECTTCCCCEEEEECS-----SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCE
T ss_pred             ceEEEEEEEeCCCCCccEEEEecC-----CCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCCC
Confidence            468999999998999999998753     469999999999999999999999999999999999999999999999988


Q ss_pred             eEEEEEE
Q psy8436          83 HVEIVIC   89 (306)
Q Consensus        83 ~v~L~v~   89 (306)
                      .|+|+|.
T Consensus        92 ~v~L~v~   98 (100)
T d1va8a1          92 TLTFVLI   98 (100)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            9999985

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=2.5e-19  Score=129.63  Aligned_cols=84  Identities=32%  Similarity=0.500  Sum_probs=71.5

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCC-----CCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGR-----DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIA  293 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~-----~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~  293 (306)
                      .+.++|+|.|.+  .+|||+|.+..     +......++||..|.++|+|+++|+|++||+|++|||+++.+++|++|++
T Consensus         3 g~~~~V~L~k~~--~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~   80 (99)
T d1ozia_           3 GDTFEVELAKTD--GSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE   80 (99)
T ss_dssp             TCEEEEEEECCS--SSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHH
T ss_pred             CCEEEEEEEECC--CCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHH
Confidence            467899999985  58999997543     33334568999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCceec
Q psy8436         294 MFKDIFPQSSKL  305 (306)
Q Consensus       294 ~Lk~~~~~~~~l  305 (306)
                      +||+++ ..++|
T Consensus        81 ~lk~~~-~~v~L   91 (99)
T d1ozia_          81 TLRNTG-QVVHL   91 (99)
T ss_dssp             HHHHSC-SEEEE
T ss_pred             HHHCCC-CeEEE
Confidence            999875 44544

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5e-20  Score=134.73  Aligned_cols=88  Identities=15%  Similarity=0.317  Sum_probs=76.9

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcc-cCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHR-DGRFHVGDELIKVNDKRLKGLTIQEAREALNNK   80 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~-~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~   80 (306)
                      +..+++|.|.|+..++|||+|.++.+..  .++||+.|.++|||++ +|+|++||+||+|||+++.+++|++|+++|+++
T Consensus         6 ~~~~~~v~l~~~~~g~lG~~l~gg~d~~--~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~   83 (106)
T d2cs5a1           6 HDNLVLIRMKPDENGRFGFNVKGGYDQK--MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS   83 (106)
T ss_dssp             SSCCEEEEECCCSSSCCSEEEEEEGGGT--EEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHH
T ss_pred             CCcEEEEEEEeCCCCCccEEEEeeecCC--CCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            3568899999998889999999986543  5799999999999999 477999999999999999999999999999976


Q ss_pred             C----CeEEEEEEeC
Q psy8436          81 D----SHVEIVICRN   91 (306)
Q Consensus        81 ~----~~v~L~v~r~   91 (306)
                      +    ..|.|+|++.
T Consensus        84 ~~~~~~~v~L~vrp~   98 (106)
T d2cs5a1          84 CERHSGELMLLVRPN   98 (106)
T ss_dssp             HHCCSSCEEEEEECC
T ss_pred             CCCCCcEEEEEECCC
Confidence            3    3588888764

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.80  E-value=8.5e-20  Score=129.89  Aligned_cols=77  Identities=30%  Similarity=0.597  Sum_probs=68.6

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      +.+|+|.|... .+|||+|.|+.+.. ++.|+||.+|.++|||+++|+|++||+|++|||+++.+++|+||+++||+++
T Consensus         2 i~tV~l~k~~~-~~lGi~i~gg~~~~-~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~   78 (92)
T d2f0aa1           2 IITVTLNMEKY-NFLGISIVGQSNER-GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIV   78 (92)
T ss_dssp             EEEEEECHHHH-CSCCEEEECCCCTT-SCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCC-CccCEEEEccCCCC-CCCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhcc
Confidence            46789988753 68999999988753 3469999999999999999999999999999999999999999999999864

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=8.6e-20  Score=136.58  Aligned_cols=88  Identities=22%  Similarity=0.280  Sum_probs=75.7

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCC--cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGA--HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK   80 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~--~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~   80 (306)
                      .+.+.|.|.|+++.+|||+|.|+....  ...++||+.|.|+|||+++|+|++||+||+|||+++.+++|++|+++|+.+
T Consensus        14 ~~~~ev~l~k~~~~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~   93 (122)
T d1v5qa_          14 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS   93 (122)
T ss_dssp             EEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHH
T ss_pred             ceeEEEEEecCCCCccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcC
Confidence            367889999999999999999985432  235799999999999999999999999999999999999999999999998


Q ss_pred             CCeEEEEEEe
Q psy8436          81 DSHVEIVICR   90 (306)
Q Consensus        81 ~~~v~L~v~r   90 (306)
                      +..++|+|.+
T Consensus        94 ~~~~~l~l~~  103 (122)
T d1v5qa_          94 SITSKVTLEI  103 (122)
T ss_dssp             TTTTCEEEEE
T ss_pred             CCceEEEEEE
Confidence            6655444443

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3e-19  Score=132.73  Aligned_cols=89  Identities=21%  Similarity=0.317  Sum_probs=77.3

Q ss_pred             ccEEEEEEeCC------CCceeEEEEecCCCC---cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy8436           4 QFKVFRVVKDD------SNELGIYIERQDGGA---HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAR   74 (306)
Q Consensus         4 ~~~~v~l~r~~------~~~lG~~i~gg~~~~---~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~   74 (306)
                      +.+.+.|.|+.      +.+|||+|.|+....   ...|+||..|.++|||+++|+|++||+||+|||++|.+++|++|+
T Consensus        12 p~~~v~l~r~~~~~~~~g~glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~   91 (117)
T d1ujda_          12 PHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQ   91 (117)
T ss_dssp             CEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CceeEEEEecccccccCCcccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHH
Confidence            44678888874      467999999884332   124799999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCeEEEEEEeCC
Q psy8436          75 EALNNKDSHVEIVICRNP   92 (306)
Q Consensus        75 ~~l~~~~~~v~L~v~r~~   92 (306)
                      ++|++++..|+|+|.|..
T Consensus        92 ~~i~~~~~~v~l~v~r~~  109 (117)
T d1ujda_          92 SIISQQSGEAEICVRLDL  109 (117)
T ss_dssp             HHHSCCSSCEEEEEESSC
T ss_pred             HHHHcCCCeEEEEEEECC
Confidence            999999989999999864

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.3e-19  Score=123.12  Aligned_cols=76  Identities=17%  Similarity=0.374  Sum_probs=69.9

Q ss_pred             EEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEE
Q psy8436           8 FRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIV   87 (306)
Q Consensus         8 v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~   87 (306)
                      |+|.|.. .+|||++.++      .++||+.|.++|||+++| |++||+|++|||+++.+++|.+++.+++++++.++|+
T Consensus         1 v~l~r~~-~g~Gf~l~~~------~~~~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~~v~L~   72 (77)
T d2f5ya1           1 ITIPRGK-DGFGFTICCD------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILL   72 (77)
T ss_dssp             EEEECBT-TBTSEEEECS------SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred             CEEecCC-CcccEEEECC------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEE
Confidence            5788865 5899999853      469999999999999999 9999999999999999999999999999999999999


Q ss_pred             EEeC
Q psy8436          88 ICRN   91 (306)
Q Consensus        88 v~r~   91 (306)
                      |.|.
T Consensus        73 v~R~   76 (77)
T d2f5ya1          73 VWRM   76 (77)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            9884

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.5e-19  Score=131.70  Aligned_cols=87  Identities=22%  Similarity=0.330  Sum_probs=77.2

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCc----CCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAH----FSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN   79 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~----~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~   79 (306)
                      +.++|.|.|+++++|||+|.++.+..+    ..++||..|.+||||+  +.|++||+||+|||+++.+++|++|+++|+.
T Consensus         7 e~~tV~l~k~~~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~--~~L~~GD~Il~INg~~v~~~~~~ev~~ll~~   84 (104)
T d2csja1           7 EQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHSFAVQQLRK   84 (104)
T ss_dssp             EEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH--HHBCTTCEEEEESSCBCBTCCHHHHHHHHHH
T ss_pred             ccEEEEEEeCCCCCcCEEEEcccCCCccccCCCCEEEEEECCCChhh--cCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            347899999988999999999865432    3579999999999996  4499999999999999999999999999999


Q ss_pred             CCCeEEEEEEeCC
Q psy8436          80 KDSHVEIVICRNP   92 (306)
Q Consensus        80 ~~~~v~L~v~r~~   92 (306)
                      ++..++|+|.|..
T Consensus        85 ~~~~v~l~V~R~~   97 (104)
T d2csja1          85 SGKIAAIVVKRPR   97 (104)
T ss_dssp             SCSEEEEEEEEEE
T ss_pred             CCCEEEEEEEeCC
Confidence            9999999999864

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.7e-19  Score=129.03  Aligned_cols=83  Identities=29%  Similarity=0.541  Sum_probs=70.5

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCC---CCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGR---DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK  296 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~---~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk  296 (306)
                      +.++|+|.|.+  .+|||+|.|+.   +......|+||++|.++|||+++|+|++||+|++|||+++.+++|++|+++||
T Consensus         2 e~~~V~L~k~~--~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~   79 (94)
T d1wf8a1           2 ELFPVELEKDE--DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR   79 (94)
T ss_dssp             EEEEEEEECBT--TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHH
T ss_pred             eEEEEEEEeCC--CCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHH
Confidence            46789999985  68999998743   22233468999999999999999999999999999999999999999999999


Q ss_pred             hcCCCceec
Q psy8436         297 DIFPQSSKL  305 (306)
Q Consensus       297 ~~~~~~~~l  305 (306)
                      +++. .++|
T Consensus        80 ~~~~-~v~L   87 (94)
T d1wf8a1          80 NTKG-NVRF   87 (94)
T ss_dssp             HCCS-EEEE
T ss_pred             cCCC-eEEE
Confidence            8764 4544

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.4e-20  Score=135.35  Aligned_cols=82  Identities=24%  Similarity=0.351  Sum_probs=70.7

Q ss_pred             EEeCCCCceeEEEEecCCCC-cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEE
Q psy8436          10 VVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEI   86 (306)
Q Consensus        10 l~r~~~~~lG~~i~gg~~~~-~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L   86 (306)
                      +.++.+.+|||+|.||.... ...|+||+.|.++|||+++|.|++||+||+|||+++.+++|++|+.+|+.+  +..++|
T Consensus        24 ~~~~~~~~lG~~i~gg~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l  103 (108)
T d2cssa1          24 MPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEI  103 (108)
T ss_dssp             CSSSCSSCSSEEEEEEEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEE
T ss_pred             EecCCCCCcCEEEeccCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEE
Confidence            34446789999999985432 234899999999999999999999999999999999999999999999976  457999


Q ss_pred             EEEeC
Q psy8436          87 VICRN   91 (306)
Q Consensus        87 ~v~r~   91 (306)
                      +|.|+
T Consensus       104 ~v~RP  108 (108)
T d2cssa1         104 IVSRP  108 (108)
T ss_dssp             EEEEC
T ss_pred             EEeCc
Confidence            99884

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=7.7e-20  Score=130.66  Aligned_cols=82  Identities=15%  Similarity=0.279  Sum_probs=72.8

Q ss_pred             EEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEE
Q psy8436           6 KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVE   85 (306)
Q Consensus         6 ~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~   85 (306)
                      .+|++  ..+.+|||+|.++.+..  .++||..|.|++||+++| |++||+||+|||+++.+++|++|+.+|+++++.|+
T Consensus         8 ~tv~~--~g~~~~Gf~i~gg~d~~--~~i~V~~v~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~   82 (94)
T d1vb7a_           8 LTVDV--AGPAPWGFRISGGRDFH--TPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLR   82 (94)
T ss_dssp             EEEEE--CSSSCCSBCCEEETTTT--EEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEE
T ss_pred             EEEEE--ECCCcCCEEEEeeccCC--CCEEEEeccCCChhhhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            44554  34579999999987653  579999999999999988 99999999999999999999999999999999999


Q ss_pred             EEEEeCC
Q psy8436          86 IVICRNP   92 (306)
Q Consensus        86 L~v~r~~   92 (306)
                      |+|.|..
T Consensus        83 L~V~R~~   89 (94)
T d1vb7a_          83 LQLDRSS   89 (94)
T ss_dssp             EEEECCC
T ss_pred             EEEEECC
Confidence            9999864

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.8e-19  Score=127.55  Aligned_cols=82  Identities=35%  Similarity=0.503  Sum_probs=72.0

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .+.++|+|.|.++ .+|||+|.+|.+..   .|+||..|.++|+|+++|.|++||+|++|||+++.+++|++|+++|+++
T Consensus         3 ~q~r~V~l~k~~~-~~lG~~i~gg~~~~---~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~   78 (90)
T d1qava_           3 LQRRRVTVRKADA-GGLGISIKGGRENK---MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT   78 (90)
T ss_dssp             SSCEEEEEECCTT-TCCCEEEEEEGGGT---EEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             ceEEEEEEEeCCC-CccCEEEEccccCC---CCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            3457899999864 68999999887643   5899999999999999999999999999999999999999999999998


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      .. .++|
T Consensus        79 ~~-~v~l   84 (90)
T d1qava_          79 GK-EVVL   84 (90)
T ss_dssp             CS-EEEE
T ss_pred             CC-eEEE
Confidence            64 4544

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.5e-20  Score=133.18  Aligned_cols=88  Identities=22%  Similarity=0.288  Sum_probs=75.4

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCC--CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGG--AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN   79 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~--~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~   79 (306)
                      ..+.+.|.|.|+++++|||+|+|+...  ....++||+.|.++|||+++|+|++||+|++|||++|.+++|++++++|++
T Consensus         6 ~~e~~~V~l~~~~~~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~   85 (99)
T d1x5ra1           6 HTETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRD   85 (99)
T ss_dssp             SSEEEEEEECCCTTTCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHH
T ss_pred             eeeeEEEEEEcCCCCCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            346778999999999999999988532  234579999999999999999999999999999999999999999999998


Q ss_pred             CCCe--EEEEEE
Q psy8436          80 KDSH--VEIVIC   89 (306)
Q Consensus        80 ~~~~--v~L~v~   89 (306)
                      ++..  +.|.|.
T Consensus        86 ~~~~~~l~l~v~   97 (99)
T d1x5ra1          86 AALAHKVVLEVE   97 (99)
T ss_dssp             HHTTTCEEEEEE
T ss_pred             CCCCCEEEEEEE
Confidence            7544  555553

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.4e-19  Score=131.37  Aligned_cols=82  Identities=30%  Similarity=0.560  Sum_probs=72.7

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.|.|.|..+ .+|||+|.||.+..  ..++||.+|.++|+|+++|+|++||+|++|||+++.+++|++|+++||++
T Consensus         7 ~~~~~v~l~k~~~-~~lG~~i~gg~~~~--~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~   83 (107)
T d1x6da1           7 DGIHVTILHKEEG-AGLGFSLAGGADLE--NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQA   83 (107)
T ss_dssp             TTEEEEEEECCTT-SCCSEEEECCSSSS--CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHT
T ss_pred             CCcEEEEEEcCCC-CccCEEEeeccCCC--CCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcC
Confidence            4567888988864 78999999987753  36899999999999999999999999999999999999999999999998


Q ss_pred             CCCce
Q psy8436         299 FPQSS  303 (306)
Q Consensus       299 ~~~~~  303 (306)
                      +....
T Consensus        84 ~~~~~   88 (107)
T d1x6da1          84 REPRQ   88 (107)
T ss_dssp             TSSSE
T ss_pred             CCCEE
Confidence            86554

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.5e-19  Score=129.48  Aligned_cols=86  Identities=26%  Similarity=0.349  Sum_probs=76.2

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      +...+.|.|.+..+.+|||+|.+|.+..  .|+||..|.++|||+++| |++||+||+|||+++.+++|++|+++|+.++
T Consensus         6 ~~~~~~v~i~~~~~~glG~~i~~g~~~~--~gi~V~~V~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~   82 (101)
T d1x5na1           6 ENKEKKVFISLVGSRGLGCSISSGPIQK--PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSR   82 (101)
T ss_dssp             CCSSEEEEECCCSSCCCCEEEEECCSSS--CSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHCS
T ss_pred             CCccEEEEEEeeCCCcccEEEeccCCCC--CCEEEEEECCCChHHhCC-CCcccEEEEECCEECCCCCHHHHHHHHhCCC
Confidence            3456889999988899999999986543  689999999999999998 9999999999999999999999999999986


Q ss_pred             CeEEEEEEeC
Q psy8436          82 SHVEIVICRN   91 (306)
Q Consensus        82 ~~v~L~v~r~   91 (306)
                       .+.|+|.+.
T Consensus        83 -~~~l~v~~~   91 (101)
T d1x5na1          83 -SLTISIVAA   91 (101)
T ss_dssp             -SEEEEECSS
T ss_pred             -CEEEEEEEC
Confidence             477777654

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.2e-19  Score=131.41  Aligned_cols=86  Identities=24%  Similarity=0.438  Sum_probs=75.8

Q ss_pred             cccEEEEEEeCC-CCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436           3 KQFKVFRVVKDD-SNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD   81 (306)
Q Consensus         3 ~~~~~v~l~r~~-~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~   81 (306)
                      .+++.|.|.|+. +++|||+|.++.+..  .++||..|.++|||+++| |++||+||+|||+++.+++|++|+++|+.++
T Consensus         7 ~~~~~v~l~r~~~~~glG~~i~gg~~~~--~~i~V~~v~~gg~A~~~g-L~~GD~Il~ING~~v~~~~~~~v~~ll~~~~   83 (101)
T d1ueza_           7 GEVRLVSLRRAKAHEGLGFSIRGGSEHG--VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGSK   83 (101)
T ss_dssp             CCCEEECCCCCCTTTCSSEEEEECTTTT--CCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSSS
T ss_pred             CCEEEEEEEECCCCCeeCEEEEecccCC--CCEEEEEECCCChHHhcC-CCCCcEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            478999999974 568999999986653  589999999999999999 9999999999999999999999999999986


Q ss_pred             CeEEEEEEeCC
Q psy8436          82 SHVEIVICRNP   92 (306)
Q Consensus        82 ~~v~L~v~r~~   92 (306)
                      . +.|+|.|..
T Consensus        84 ~-~~l~V~~~~   93 (101)
T d1ueza_          84 K-LVLSVYSAG   93 (101)
T ss_dssp             S-CCEEECCCC
T ss_pred             C-EEEEEEECC
Confidence            4 667777654

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=3.8e-19  Score=127.49  Aligned_cols=77  Identities=21%  Similarity=0.435  Sum_probs=68.3

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ..++.+++.+.   .+|||+|.||.+...+ .++||+.|.++|+|+++|+|++||+|++|||+++.+++|+||+++||++
T Consensus         7 ~~~~~v~~~~~---~glG~~i~gg~~~~~~-~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~   82 (96)
T d1wi4a1           7 PAFRVITVTKE---TGLGLKILGGINRNEG-PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRA   82 (96)
T ss_dssp             TTEEEEEECCS---SCCCEEEEECSSSSSC-SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHS
T ss_pred             CcEEEEEecCC---CccCEEEEeccCCCCC-CCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            45677777775   4699999999876543 4899999999999999999999999999999999999999999999987


Q ss_pred             C
Q psy8436         299 F  299 (306)
Q Consensus       299 ~  299 (306)
                      .
T Consensus        83 ~   83 (96)
T d1wi4a1          83 K   83 (96)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.3e-19  Score=123.60  Aligned_cols=80  Identities=15%  Similarity=0.362  Sum_probs=73.4

Q ss_pred             cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCe
Q psy8436           5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-DSH   83 (306)
Q Consensus         5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~   83 (306)
                      .|.|.|.|+..++|||++....     .|+||.+|.++|||+++| |++||+|++|||+++.++++++++.+|+.+ +..
T Consensus         3 pr~v~l~k~~~~~lG~~l~~~~-----~g~~V~~v~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~   76 (85)
T d1w9ea1           3 PREVILCKDQDGKIGLRLKSID-----NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEK   76 (85)
T ss_dssp             CEEEEEECCTTSCCSEEEEEET-----TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSE
T ss_pred             CEEEEEEeCCCCCEeEEEEeCC-----CCEEEEEECCCCHHHHcC-CCCccEEEEECCEEeCCCCHHHHHHHHhcCCCCE
Confidence            5889999999999999998764     369999999999999999 999999999999999999999999999987 457


Q ss_pred             EEEEEEe
Q psy8436          84 VEIVICR   90 (306)
Q Consensus        84 v~L~v~r   90 (306)
                      |+|+|++
T Consensus        77 v~l~v~~   83 (85)
T d1w9ea1          77 ITMTIRD   83 (85)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            9999865

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=1e-18  Score=127.18  Aligned_cols=77  Identities=35%  Similarity=0.646  Sum_probs=69.1

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ..+++|+|.|.++ .+|||+|.++.+..   .|+||..|.++|+|+++| |++||+||+|||+++.+++|+||+++||+.
T Consensus        14 ~~pr~V~l~r~~~-~~lGf~i~gg~~~~---~gi~V~~V~~~s~A~~~G-L~~GD~Il~VNg~~v~~~~~~ev~~llk~~   88 (104)
T d1wi2a_          14 FLPRIVTLKKPPG-AQLGFNIRGGKASQ---LGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTA   88 (104)
T ss_dssp             SCCEEEEECCCTT-CCCSEEEECCSSSC---CCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHHS
T ss_pred             CcCEEEEEEeCCC-CCcceEEEccccCC---CCEEEEEECCCChhHhcc-cccCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            4457899999864 78999999988653   589999999999999999 999999999999999999999999999987


Q ss_pred             CC
Q psy8436         299 FP  300 (306)
Q Consensus       299 ~~  300 (306)
                      +.
T Consensus        89 ~~   90 (104)
T d1wi2a_          89 RE   90 (104)
T ss_dssp             SS
T ss_pred             Ce
Confidence            53

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=1.6e-19  Score=135.99  Aligned_cols=87  Identities=29%  Similarity=0.414  Sum_probs=74.8

Q ss_pred             EEEEEEeCCCCceeEEEEecCCCC--cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC---
Q psy8436           6 KVFRVVKDDSNELGIYIERQDGGA--HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK---   80 (306)
Q Consensus         6 ~~v~l~r~~~~~lG~~i~gg~~~~--~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~---   80 (306)
                      ..|.|.+....+|||+|.|+.+..  ...++||+.|.|+|+|+++|+|++||+||+|||++|.+++|++|+++||++   
T Consensus        27 ~~v~l~~~~~~glG~~i~gg~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~  106 (127)
T d1wg6a_          27 LEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSM  106 (127)
T ss_dssp             EEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEccCCCCcEeEEEEeecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhcccc
Confidence            455666767778999999885432  234799999999999999999999999999999999999999999999986   


Q ss_pred             ----CCeEEEEEEeCC
Q psy8436          81 ----DSHVEIVICRNP   92 (306)
Q Consensus        81 ----~~~v~L~v~r~~   92 (306)
                          ...|+|+|.|..
T Consensus       107 ~~~~~~~V~L~V~R~~  122 (127)
T d1wg6a_         107 EGNIRGMIQLVILRRS  122 (127)
T ss_dssp             HHHHTCEEEEEEEECS
T ss_pred             cCCCCCEEEEEEeeCC
Confidence                458999999853

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=6.8e-19  Score=127.45  Aligned_cols=76  Identities=37%  Similarity=0.643  Sum_probs=69.1

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .+++.|+|.|.+  .+|||+|.++.+.    .|+||..|.++|+|+++|.|++||+|++|||+++.+++|+||+++|+++
T Consensus         8 ~~~r~V~l~k~~--~glG~~i~~~~~~----~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~   81 (102)
T d1tp5a1           8 REPRRIVIHRGS--TGLGFNIVGGEDG----EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA   81 (102)
T ss_dssp             CSCEEEEEECTT--SCCCEEEEECGGG----CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred             CCCEEEEEEeCC--CcccEEEEeccCC----CCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcC
Confidence            456899999975  6899999998764    5999999999999999999999999999999999999999999999986


Q ss_pred             CC
Q psy8436         299 FP  300 (306)
Q Consensus       299 ~~  300 (306)
                      +.
T Consensus        82 ~~   83 (102)
T d1tp5a1          82 GQ   83 (102)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=1.3e-18  Score=128.79  Aligned_cols=77  Identities=21%  Similarity=0.385  Sum_probs=70.0

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP  300 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~  300 (306)
                      +++|+|.|... .+|||+|.++.+.    .|+||..|.++|||+++|+|++||+|++|||+++.+++|++|+++|++++.
T Consensus         2 i~~V~l~k~~~-~glG~~i~~~~~~----~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~   76 (112)
T d1qaua_           2 VISVRLFKRKV-GGLGFLVKERVSK----PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIAS   76 (112)
T ss_dssp             EEEEEEECBTT-TBTSEEEEECSSS----SCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCS
T ss_pred             eEEEEEEECCC-CcEeEEEEeecCC----CCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCC
Confidence            56899998764 7899999988764    589999999999999999999999999999999999999999999999876


Q ss_pred             Cc
Q psy8436         301 QS  302 (306)
Q Consensus       301 ~~  302 (306)
                      ..
T Consensus        77 ~~   78 (112)
T d1qaua_          77 ET   78 (112)
T ss_dssp             SS
T ss_pred             Cc
Confidence            54

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.7e-18  Score=120.99  Aligned_cols=78  Identities=27%  Similarity=0.374  Sum_probs=66.8

Q ss_pred             EEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCc
Q psy8436         223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQS  302 (306)
Q Consensus       223 ~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~  302 (306)
                      .|.|.|.++ .+|||+|+++..... ..++||.+|.++|+|+++|+|++||+|++|||+++.+++|++|+++||+++...
T Consensus         1 eV~l~k~~g-~~LGi~i~~~~~~~~-~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~   78 (85)
T d1x45a1           1 DVFIEKQKG-EILGVVIVESGWGSI-LPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQS   78 (85)
T ss_dssp             EEEEECCTT-SCCCEEEECCTTTSS-SCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCS
T ss_pred             CeEEEeCCC-CccCEEEEeCCCCCC-CCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCC
Confidence            378888876 799999975433211 247999999999999999999999999999999999999999999999987653

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=5.6e-19  Score=126.41  Aligned_cols=83  Identities=31%  Similarity=0.448  Sum_probs=70.7

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCC---CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPK---GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~---~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      +++|+|.|.++ .+|||+|.++.+...   ...|+||..|.|+|||+++|+|++||+|++|||+++.+++|++|+++|++
T Consensus         4 i~~V~L~k~~~-~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~   82 (94)
T d1ihja_           4 IHMVTLDKTGK-KSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE   82 (94)
T ss_dssp             EEEEEEECTTS-SSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EEEEEEEeCCC-CCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHc
Confidence            56899999764 789999998765432   23579999999999999999999999999999999999999999999998


Q ss_pred             cCCCceec
Q psy8436         298 IFPQSSKL  305 (306)
Q Consensus       298 ~~~~~~~l  305 (306)
                      ++. .+.|
T Consensus        83 ~~~-~v~L   89 (94)
T d1ihja_          83 ADF-KIEL   89 (94)
T ss_dssp             SCS-EEEE
T ss_pred             CCC-EEEE
Confidence            754 3443

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=1.5e-18  Score=124.15  Aligned_cols=80  Identities=26%  Similarity=0.404  Sum_probs=69.8

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      .+++|.|.|..  ++|||+|.++.+..   .++||.+|.++|+|+++|+|++||+|++|||+++.+++|+||+.+|+++.
T Consensus         3 ~i~tV~l~k~~--~~lG~~i~g~~~~~---~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~   77 (95)
T d1n7ea_           3 IIYTVELKRYG--GPLGITISGTEEPF---DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAG   77 (95)
T ss_dssp             CEEEEEEECTT--SCCCEEEECCSSTT---SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             EEEEEEEEECC--CcEeEEEEecccCC---CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            36789998874  68999999887642   57999999999999999999999999999999999999999999999874


Q ss_pred             CCceec
Q psy8436         300 PQSSKL  305 (306)
Q Consensus       300 ~~~~~l  305 (306)
                       ..++|
T Consensus        78 -~~v~l   82 (95)
T d1n7ea_          78 -ETVTL   82 (95)
T ss_dssp             -SEEEE
T ss_pred             -CeEEE
Confidence             34443

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.3e-18  Score=128.09  Aligned_cols=84  Identities=32%  Similarity=0.544  Sum_probs=73.4

Q ss_pred             CccceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436         217 LSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK  296 (306)
Q Consensus       217 ~~~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk  296 (306)
                      .....+.++|.|..  .+|||+|.++.+.   +.++||+.|.++|+|+++|+|++||+|++|||++|.+++|+||+++|+
T Consensus        16 ~~~~~~~v~l~k~~--~glG~~i~gg~~~---~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~   90 (123)
T d1ueqa_          16 LKGTFLSTTLKKSN--MGFGFTIIGGDEP---DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQ   90 (123)
T ss_dssp             CCSEEEEEEEECCT--TSCSEEEECCSSS---SCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             cCCeEEEEEEEECC--CeeCEEEEeecCC---CCCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHH
Confidence            34667889998885  6899999998874   368999999999999999999999999999999999999999999999


Q ss_pred             hcCC-Cceec
Q psy8436         297 DIFP-QSSKL  305 (306)
Q Consensus       297 ~~~~-~~~~l  305 (306)
                      +++. ..+.|
T Consensus        91 ~~~~g~~v~L  100 (123)
T d1ueqa_          91 SVPIGQSVNL  100 (123)
T ss_dssp             TSCTTCEEEE
T ss_pred             cCCCCCEEEE
Confidence            9975 44444

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=2.4e-18  Score=122.02  Aligned_cols=81  Identities=22%  Similarity=0.363  Sum_probs=71.8

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .+.+.|+|.|.++..+|||+|.++.+.    .|+||..|.++|+|+++| |++||+|++|||+++.+++|.+|+.+|++.
T Consensus         5 ~e~~~v~l~k~~~~~~~Gf~i~~~~~~----~g~~V~~V~~~g~A~~~g-L~~GD~Il~VNg~~v~~~t~~~~~~~l~~~   79 (91)
T d1m5za_           5 VELHKVTLYKDSGMEDFGFSVADGLLE----KGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAES   79 (91)
T ss_dssp             CEEEEEEEECCTTCSSSSEEEEECTTS----SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred             CceEEEEEEECCCCCceeEEEeccCCC----CCEEEEEECCCChhHhCc-CCCCCEEEEECCEECCCCCHHHHHHHHHCC
Confidence            567889999987667899999988764    599999999999999998 999999999999999999999999999986


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      +. .+.|
T Consensus        80 ~~-~v~L   85 (91)
T d1m5za_          80 GN-KLDL   85 (91)
T ss_dssp             TT-EEEE
T ss_pred             CC-EEEE
Confidence            54 4444

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.9e-19  Score=131.79  Aligned_cols=84  Identities=29%  Similarity=0.515  Sum_probs=71.9

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCC------CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPK------GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIA  293 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~------~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~  293 (306)
                      ..++|+|.|.++ .+|||+|.||.+...      ...|+||..|.++|+|+++|+|++||+||+|||++|.+++|+||++
T Consensus         9 ~~~~V~l~k~~~-~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~   87 (111)
T d1ujua_           9 GLRELCIQKAPG-ERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQ   87 (111)
T ss_dssp             SSSCEEEECCTT-CCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHH
T ss_pred             CeEEEEEEeCCC-CccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHHH
Confidence            345799999874 689999999876432      2468999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCceec
Q psy8436         294 MFKDIFPQSSKL  305 (306)
Q Consensus       294 ~Lk~~~~~~~~l  305 (306)
                      +||+++. .++|
T Consensus        88 ~lk~~~~-~v~L   98 (111)
T d1ujua_          88 LLRSVGD-TLTV   98 (111)
T ss_dssp             HHSSCSS-EEEE
T ss_pred             HHHcCCC-eEEE
Confidence            9998754 4444

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.9e-18  Score=128.28  Aligned_cols=89  Identities=26%  Similarity=0.461  Sum_probs=75.2

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--   80 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--   80 (306)
                      ++++.+.+.+  ..+|||+|.||.+.. ..++||++|.|+|+|+++|+|++||+|++|||+++.+++|++|+.+|+++  
T Consensus        17 ~~v~~~~~~~--~~~lG~~i~gg~d~~-~~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~   93 (118)
T d1v6ba_          17 KDVRLLRIKK--EGSLDLALEGGVDSP-VGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWN   93 (118)
T ss_dssp             CCEEEEEEES--CSCCCCEEEEBTTSS-SCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHH
T ss_pred             ceEEEEEecC--CCCCCEEEEeeecCC-CCCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhccc
Confidence            4566655554  358999999996542 24799999999999999999999999999999999999999999999975  


Q ss_pred             --CCeEEEEEEeCCCC
Q psy8436          81 --DSHVEIVICRNPDD   94 (306)
Q Consensus        81 --~~~v~L~v~r~~~~   94 (306)
                        +..|+|+|.|..+.
T Consensus        94 ~~~~~V~L~v~r~pp~  109 (118)
T d1v6ba_          94 QGGDWIDLVVAVCPPK  109 (118)
T ss_dssp             HTCSEEEEEEECCCSC
T ss_pred             CCCCEEEEEEEeCCCC
Confidence              66799999986543

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.8e-19  Score=128.28  Aligned_cols=77  Identities=25%  Similarity=0.537  Sum_probs=68.8

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ++.++|+|.|..  .+|||+|.++.+..   .++||..|.++|+|+++|+|++||+||+|||+++.+++|+||+++||++
T Consensus         8 ~~~~~V~l~k~~--~glG~~i~gg~~~~---~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~   82 (103)
T d1uepa_           8 YKELDVHLRRME--SGFGFRILGGDEPG---QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHA   82 (103)
T ss_dssp             EEEECCEEESSS--SSCCEEECCCCSTT---SCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHH
T ss_pred             CEEEEEEEEeCC--ceEeEEEEecccCC---CcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            455678898874  68999999887643   5799999999999999999999999999999999999999999999987


Q ss_pred             CC
Q psy8436         299 FP  300 (306)
Q Consensus       299 ~~  300 (306)
                      +.
T Consensus        83 ~~   84 (103)
T d1uepa_          83 AR   84 (103)
T ss_dssp             HH
T ss_pred             CC
Confidence            64

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.1e-18  Score=118.83  Aligned_cols=75  Identities=17%  Similarity=0.321  Sum_probs=67.8

Q ss_pred             cEEEEEEeC-CCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436           5 FKVFRVVKD-DSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH   83 (306)
Q Consensus         5 ~~~v~l~r~-~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~   83 (306)
                      +++|.|.|. ...+|||++.+         .+|.+|.|+|+|+++| |++||+|++|||+++.+++|++++++|+++++.
T Consensus         1 V~tv~l~r~~~~~~lGf~i~~---------g~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~   70 (79)
T d1y7na1           1 VTTVLIRRPDLRYQLGFSVQN---------GIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGE   70 (79)
T ss_dssp             CEEEEEEESSTTSCCCEEEET---------TEEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCCEE
T ss_pred             CEEEEEEcCCCCCCcCEEEEC---------CEEEEEcCCCHHHHCC-CCCCCEEEEECCEEeCCCCHHHHHHHHHcCCCE
Confidence            467888885 56789999973         3799999999999987 999999999999999999999999999999999


Q ss_pred             EEEEEE
Q psy8436          84 VEIVIC   89 (306)
Q Consensus        84 v~L~v~   89 (306)
                      ++|+|.
T Consensus        71 v~l~vi   76 (79)
T d1y7na1          71 IHMKTM   76 (79)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999985

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=8.5e-19  Score=127.16  Aligned_cols=84  Identities=26%  Similarity=0.379  Sum_probs=72.0

Q ss_pred             EEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC----
Q psy8436           6 KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD----   81 (306)
Q Consensus         6 ~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~----   81 (306)
                      ..|.+.| .+.+|||+|.++.+.. .+++||..|.|+|||+++|+|++||+||+|||++|.+++|++|+++|++++    
T Consensus         8 ~vv~~~k-~~~~lG~~i~gg~~~~-~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~~   85 (103)
T d1ufxa_           8 TLVRVKK-SAATLGIAIEGGANTR-QPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKD   85 (103)
T ss_dssp             EEEEEEC-CSSSCCEEEECBTTSS-CSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSS
T ss_pred             EEEEEEe-CCCccCEEEeeecCCC-CCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCCCc
Confidence            4577777 5679999999986532 256999999999999999999999999999999999999999999999863    


Q ss_pred             -CeEEEEEEeC
Q psy8436          82 -SHVEIVICRN   91 (306)
Q Consensus        82 -~~v~L~v~r~   91 (306)
                       ..+.|.|.+.
T Consensus        86 ~~~~~l~v~~~   96 (103)
T d1ufxa_          86 RDYIDFLVTEF   96 (103)
T ss_dssp             CSEEEEEECCC
T ss_pred             cceEEEEEeCC
Confidence             4678877654

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.8e-18  Score=121.47  Aligned_cols=75  Identities=23%  Similarity=0.488  Sum_probs=67.0

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      -++.|+|.|+.  .+|||+|.++...    .++||..|.++|||+++| |++||+|++|||+++.+++|++|+++|++.+
T Consensus         3 ~Pr~v~l~k~~--~g~Gf~i~~~~~~----~~~~V~~V~~g~~A~~aG-l~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~   75 (91)
T d1g9oa_           3 LPRLCCLEKGP--NGYGFHLHGEKGK----LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAAL   75 (91)
T ss_dssp             CCEEEEEECBT--TBCCEEEEECTTC----SSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCS
T ss_pred             CCEEEEEEECC--CeeeEEEEecCCC----CCEEEEEEcCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            35689999985  6799999987653    689999999999999998 9999999999999999999999999999865


Q ss_pred             CC
Q psy8436         300 PQ  301 (306)
Q Consensus       300 ~~  301 (306)
                      +.
T Consensus        76 ~~   77 (91)
T d1g9oa_          76 NA   77 (91)
T ss_dssp             SE
T ss_pred             Ce
Confidence            43

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.5e-18  Score=125.43  Aligned_cols=81  Identities=31%  Similarity=0.464  Sum_probs=71.7

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .+++.|.|.|.+...+|||+|.++.+..   .++||..|.++|+|+++| |++||+|++|||+++.+++|++|+++||+.
T Consensus         7 ~~~~~v~l~r~~~~~glG~~i~gg~~~~---~~i~V~~v~~gg~A~~~g-L~~GD~Il~ING~~v~~~~~~~v~~ll~~~   82 (101)
T d1ueza_           7 GEVRLVSLRRAKAHEGLGFSIRGGSEHG---VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGS   82 (101)
T ss_dssp             CCCEEECCCCCCTTTCSSEEEEECTTTT---CCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSS
T ss_pred             CCEEEEEEEECCCCCeeCEEEEecccCC---CCEEEEEECCCChHHhcC-CCCCcEEEEECCEECCCCCHHHHHHHHhcC
Confidence            4577899988876678999999988753   589999999999999998 999999999999999999999999999987


Q ss_pred             CCCce
Q psy8436         299 FPQSS  303 (306)
Q Consensus       299 ~~~~~  303 (306)
                      +.-.+
T Consensus        83 ~~~~l   87 (101)
T d1ueza_          83 KKLVL   87 (101)
T ss_dssp             SSCCE
T ss_pred             CCEEE
Confidence            65443

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2e-18  Score=125.89  Aligned_cols=84  Identities=32%  Similarity=0.599  Sum_probs=71.8

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCC---CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPK---GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMF  295 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~---~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~L  295 (306)
                      ...+.|.|.|.+  .+|||+|.||.+...   +..|+||..|.++|+|+++|.|++||+||+|||+++.+++|+||+++|
T Consensus         6 ~~~~~v~l~k~~--~glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l   83 (105)
T d1whaa_           6 SGRHVACLARSE--RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLL   83 (105)
T ss_dssp             CEEEEEEECCCT--TCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHH
T ss_pred             CCCEEEEEEECC--CccCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHH
Confidence            345788998885  579999999876532   356899999999999999999999999999999999999999999999


Q ss_pred             hhcCCCceec
Q psy8436         296 KDIFPQSSKL  305 (306)
Q Consensus       296 k~~~~~~~~l  305 (306)
                      ++++. .+.|
T Consensus        84 ~~~~~-~v~l   92 (105)
T d1whaa_          84 TAASP-TIAL   92 (105)
T ss_dssp             TSCCS-CEEE
T ss_pred             HcCCC-eEEE
Confidence            98754 4443

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=1.9e-18  Score=124.72  Aligned_cols=83  Identities=22%  Similarity=0.345  Sum_probs=71.8

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      ..++|+|.|..+ .+|||++.++.+...+ .++||..|.++|+|+++|+|++||+||+|||+++.+++|+||+++|++++
T Consensus        10 ~~~~V~l~k~~~-~~lG~~v~~~~~~~~~-~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~   87 (99)
T d1p1da2          10 GTFHVKLPKKHS-VELGITISSPSSRKPG-DPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCE   87 (99)
T ss_dssp             SCEEEEECCCSS-CCCCCEEECSCSSSTT-CCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCT
T ss_pred             CcEEEEEEECCC-CccCEEEEecCCCCCC-CCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCC
Confidence            457899988754 7899999988765432 47999999999999999999999999999999999999999999999986


Q ss_pred             CCceec
Q psy8436         300 PQSSKL  305 (306)
Q Consensus       300 ~~~~~l  305 (306)
                      +. +.|
T Consensus        88 ~~-v~L   92 (99)
T d1p1da2          88 DL-VKL   92 (99)
T ss_dssp             TC-EEE
T ss_pred             Ce-EEE
Confidence            54 443

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.9e-18  Score=121.80  Aligned_cols=78  Identities=26%  Similarity=0.359  Sum_probs=69.1

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP  300 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~  300 (306)
                      .+.|.|.|.++ ++|||+|.++.+     .++||..|.++|+|+++|.|++||+|++|||+++.+++|++|+++|++++.
T Consensus         2 ~R~V~l~k~~~-~~lG~~l~~~~~-----~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~   75 (88)
T d1kwaa_           2 SRLVQFQKNTD-EPMGITLKMNEL-----NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRG   75 (88)
T ss_dssp             CEEEEEEECSS-SCCCEEEECSCG-----GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCE
T ss_pred             cEEEEEEeCCC-CCccEEEEEcCC-----CCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            46799999875 799999987654     589999999999999999999999999999999999999999999998764


Q ss_pred             Cceec
Q psy8436         301 QSSKL  305 (306)
Q Consensus       301 ~~~~l  305 (306)
                       .++|
T Consensus        76 -~v~L   79 (88)
T d1kwaa_          76 -SITF   79 (88)
T ss_dssp             -EEEE
T ss_pred             -cEEE
Confidence             3443

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.7e-18  Score=129.49  Aligned_cols=76  Identities=32%  Similarity=0.513  Sum_probs=69.4

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .+.++|+|.+..+ .+|||+|.||.+..   .|+||..|.++|+|+++| |++||+||+|||+++.+++|+||+++||+.
T Consensus        19 ~~~~~v~l~~~~~-~~lGf~i~gg~~~~---~gv~V~~V~~g~~A~~~g-L~~GD~Il~INg~~v~~~s~~evv~~lr~~   93 (128)
T d1uf1a_          19 GDEKKVNLVLGDG-RSLGLTIRGGAEYG---LGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS   93 (128)
T ss_dssp             SSEEEEEEECCSS-CCCCEEEECCTTTT---CCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTC
T ss_pred             CCeEEEEEEECCC-CccCEEEEeeccCC---CCEEEEEECCCChHHhcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            5568899999874 78999999998753   689999999999999998 999999999999999999999999999986


Q ss_pred             C
Q psy8436         299 F  299 (306)
Q Consensus       299 ~  299 (306)
                      +
T Consensus        94 ~   94 (128)
T d1uf1a_          94 R   94 (128)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.7e-18  Score=121.25  Aligned_cols=77  Identities=30%  Similarity=0.469  Sum_probs=66.5

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP  300 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~  300 (306)
                      +++|+|.++   .+|||+|.|+.+..   .|+||..|.+++||+++| |++||+|++|||+++.+++|+||+++|++++.
T Consensus         2 p~~V~l~~~---~~~Gf~i~gg~~~~---~~v~V~~v~~gs~A~~~~-L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~   74 (85)
T d1rgwa_           2 AYSVTLTGP---GPWGFRLQGGKDFN---MPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASY   74 (85)
T ss_dssp             EEEEEECCS---SCCCEEECCCGGGT---SCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSS
T ss_pred             CEEEEecCC---CCCCEEEEeecCCC---CCEEEEEecCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            467888654   57999999998753   689999999999999765 99999999999999999999999999998754


Q ss_pred             Cceec
Q psy8436         301 QSSKL  305 (306)
Q Consensus       301 ~~~~l  305 (306)
                       .+.|
T Consensus        75 -~v~L   78 (85)
T d1rgwa_          75 -NLSL   78 (85)
T ss_dssp             -CEEE
T ss_pred             -EEEE
Confidence             4544

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.7e-18  Score=123.92  Aligned_cols=80  Identities=29%  Similarity=0.359  Sum_probs=69.4

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.|.+.+..+ .+|||+|.+|.+..   .|+||..|.++|||+++| |++||+||+|||+++.+++|++|+++|++.
T Consensus         7 ~~~~~v~i~~~~~-~glG~~i~~g~~~~---~gi~V~~V~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~v~~~lk~~   81 (101)
T d1x5na1           7 NKEKKVFISLVGS-RGLGCSISSGPIQK---PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSS   81 (101)
T ss_dssp             CSSEEEEECCCSS-CCCCEEEEECCSSS---CSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHC
T ss_pred             CccEEEEEEeeCC-CcccEEEeccCCCC---CCEEEEEECCCChHHhCC-CCcccEEEEECCEECCCCCHHHHHHHHhCC
Confidence            3456788877654 78999999988753   589999999999999987 999999999999999999999999999998


Q ss_pred             CCCce
Q psy8436         299 FPQSS  303 (306)
Q Consensus       299 ~~~~~  303 (306)
                      +...+
T Consensus        82 ~~~~l   86 (101)
T d1x5na1          82 RSLTI   86 (101)
T ss_dssp             SSEEE
T ss_pred             CCEEE
Confidence            75443

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.8e-18  Score=124.64  Aligned_cols=82  Identities=23%  Similarity=0.284  Sum_probs=71.5

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCC-CCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKG-NLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~-~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      .+.+.|+|.|.++ .+|||+|+|+.+.... ..|+||+.|.++|||+++|+|++||+|++|||+++.+++|+||+++||+
T Consensus         7 ~e~~~V~l~~~~~-~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~   85 (99)
T d1x5ra1           7 TETTEVVLCGDPL-SGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRD   85 (99)
T ss_dssp             SEEEEEEECCCTT-TCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHH
T ss_pred             eeeEEEEEEcCCC-CCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            4567899998875 6899999998754322 4689999999999999999999999999999999999999999999998


Q ss_pred             cCCC
Q psy8436         298 IFPQ  301 (306)
Q Consensus       298 ~~~~  301 (306)
                      ++..
T Consensus        86 ~~~~   89 (99)
T d1x5ra1          86 AALA   89 (99)
T ss_dssp             HHTT
T ss_pred             CCCC
Confidence            7554

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.4e-18  Score=126.09  Aligned_cols=84  Identities=18%  Similarity=0.325  Sum_probs=73.1

Q ss_pred             EEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEE
Q psy8436           7 VFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEI   86 (306)
Q Consensus         7 ~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L   86 (306)
                      .|.+..  +.+|||+|.++.+..  .++||..|.++++|++.+ |++||+||+|||+++.+++|++|+++|+.+++.|+|
T Consensus         8 ~v~~~g--~~g~Gf~i~gg~d~~--~~v~V~~v~~g~~a~~~~-L~~GD~Il~INg~~v~~~t~~eav~li~~~~~~v~L   82 (103)
T d1wf7a_           8 SVSLVG--PAPWGFRLQGGKDFN--MPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNM   82 (103)
T ss_dssp             EEEEES--SSCCSCCEEEETTTT--EEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEE
T ss_pred             EEEEEC--CCCccEEEEcccCCC--CCEEEEecCCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            355544  568999999997643  579999999999999766 999999999999999999999999999999999999


Q ss_pred             EEEeCCCCC
Q psy8436          87 VICRNPDDA   95 (306)
Q Consensus        87 ~v~r~~~~~   95 (306)
                      +|.|.....
T Consensus        83 ~v~R~~~~~   91 (103)
T d1wf7a_          83 TLQRASAAA   91 (103)
T ss_dssp             EECCCSCCC
T ss_pred             EEEECCCCC
Confidence            999876443

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.1e-17  Score=120.21  Aligned_cols=84  Identities=30%  Similarity=0.539  Sum_probs=71.5

Q ss_pred             ccceEEEEEEeCCCCCcccEEEEcCCCCCC---CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy8436         218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPK---GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM  294 (306)
Q Consensus       218 ~~~~~~v~l~k~~~~~~lG~~l~gg~~~~~---~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~  294 (306)
                      ..+.++++|.|..  .+|||+|.++.+...   ...|+||..|.++|||+++| |++||+|++|||+++.+++|.+|+.+
T Consensus         6 ~~~~~~v~l~k~~--~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~   82 (97)
T d1x5qa1           6 EEEELTLTILRQT--GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEA   82 (97)
T ss_dssp             CCEEEEEEEECSS--SSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCeEEEEEEEeCC--CeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhc-ccCCCEEEEECCEECCCCCHHHHHHH
Confidence            3456789999985  689999998876542   24689999999999999999 99999999999999999999999999


Q ss_pred             HhhcCCCceec
Q psy8436         295 FKDIFPQSSKL  305 (306)
Q Consensus       295 Lk~~~~~~~~l  305 (306)
                      |++.+ ..++|
T Consensus        83 l~~~~-~~v~l   92 (97)
T d1x5qa1          83 LRGAG-TAVQM   92 (97)
T ss_dssp             HHSCC-SEEEE
T ss_pred             HhCCC-CEEEE
Confidence            99864 44443

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=6.1e-19  Score=129.15  Aligned_cols=74  Identities=28%  Similarity=0.491  Sum_probs=66.3

Q ss_pred             CCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC-Cceec
Q psy8436         232 QKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP-QSSKL  305 (306)
Q Consensus       232 ~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~-~~~~l  305 (306)
                      ..+|||+|.||.+.+.+..|+||..|.++|+|+++|+|++||+||+|||+++.+++|+||+++|++++. ..+.|
T Consensus        29 ~~~lG~~i~gg~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l  103 (108)
T d2cssa1          29 GALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEI  103 (108)
T ss_dssp             SSCSSEEEEEEEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEE
T ss_pred             CCCcCEEEeccCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEE
Confidence            368999999998887767799999999999999999999999999999999999999999999998754 34544

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=8.6e-18  Score=125.53  Aligned_cols=83  Identities=23%  Similarity=0.302  Sum_probs=72.6

Q ss_pred             ccceEEEEEEeCCCCCcccEEEEcCCCCCC-CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436         218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPK-GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK  296 (306)
Q Consensus       218 ~~~~~~v~l~k~~~~~~lG~~l~gg~~~~~-~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk  296 (306)
                      ..+...|+|.|.+. .+|||+|.|+.+... ...++||..|.++|+|+++|+|++||+||+|||+++.+++|+||+++||
T Consensus        13 ~~~~~ev~l~k~~~-~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk   91 (122)
T d1v5qa_          13 HTETTEVVLTADPV-TGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLR   91 (122)
T ss_dssp             CEEEEEEEECCCSS-SSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHH
T ss_pred             cceeEEEEEecCCC-CccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHH
Confidence            35678899988864 689999999876532 2367999999999999999999999999999999999999999999999


Q ss_pred             hcCCC
Q psy8436         297 DIFPQ  301 (306)
Q Consensus       297 ~~~~~  301 (306)
                      +++..
T Consensus        92 ~~~~~   96 (122)
T d1v5qa_          92 DSSIT   96 (122)
T ss_dssp             HHTTT
T ss_pred             cCCCc
Confidence            98755

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=7.5e-18  Score=118.01  Aligned_cols=77  Identities=23%  Similarity=0.312  Sum_probs=69.5

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP  300 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~  300 (306)
                      ++.|.|.|... .+|||++....      .|+||..|.++|||+++| |++||+|++|||+++.+++|++++++||+.++
T Consensus         3 pr~v~l~k~~~-~~lG~~l~~~~------~g~~V~~v~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~   74 (85)
T d1w9ea1           3 PREVILCKDQD-GKIGLRLKSID------NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFG   74 (85)
T ss_dssp             CEEEEEECCTT-SCCSEEEEEET------TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             CEEEEEEeCCC-CCEeEEEEeCC------CCEEEEEECCCCHHHHcC-CCCccEEEEECCEEeCCCCHHHHHHHHhcCCC
Confidence            56899999874 78999998765      489999999999999998 99999999999999999999999999999887


Q ss_pred             Cceec
Q psy8436         301 QSSKL  305 (306)
Q Consensus       301 ~~~~l  305 (306)
                      ..+.|
T Consensus        75 ~~v~l   79 (85)
T d1w9ea1          75 EKITM   79 (85)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            77665

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=4.3e-18  Score=122.41  Aligned_cols=81  Identities=27%  Similarity=0.375  Sum_probs=69.3

Q ss_pred             eEEEEEEeCCCCCcccEEEEcCCCCCCC------CCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy8436         221 MFTVTFQKGPGQKSLGFSIVGGRDSPKG------NLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM  294 (306)
Q Consensus       221 ~~~v~l~k~~~~~~lG~~l~gg~~~~~~------~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~  294 (306)
                      .+.|.|.|.....+|||+|.+|.+....      ..|+||..|.++|+|+++|.|++||+|++|||+++.+++|+||+++
T Consensus         3 ~r~V~L~k~~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~   82 (98)
T d1rzxa_           3 HRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDM   82 (98)
T ss_dssp             CEEEEEECCCSSSCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             cEEEEEEECCCCCcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHH
Confidence            3578888876667899999887653221      2479999999999999999999999999999999999999999999


Q ss_pred             HhhcCCC
Q psy8436         295 FKDIFPQ  301 (306)
Q Consensus       295 Lk~~~~~  301 (306)
                      |++++..
T Consensus        83 l~~~~~~   89 (98)
T d1rzxa_          83 MVANSSN   89 (98)
T ss_dssp             HHHTCTE
T ss_pred             HHcCCCe
Confidence            9987643

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=9.1e-18  Score=124.45  Aligned_cols=81  Identities=26%  Similarity=0.436  Sum_probs=71.0

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCC----CCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKG----NLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM  294 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~----~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~  294 (306)
                      .+.++|+|.|.+ ..+|||+|.++.+....    ..++||..|.++|+|+++|.|++||+|++|||++|.+++|+||+++
T Consensus         9 ~~~~~V~l~r~~-~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~l   87 (114)
T d1uewa_           9 LQTSDVVIHRKE-NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKL   87 (114)
T ss_dssp             CCCEEEEEECCT-TSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHH
T ss_pred             ceeEEEEEEeCC-CCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHH
Confidence            456789999986 37899999988765422    3579999999999999999999999999999999999999999999


Q ss_pred             HhhcCC
Q psy8436         295 FKDIFP  300 (306)
Q Consensus       295 Lk~~~~  300 (306)
                      ||+++.
T Consensus        88 l~~~~~   93 (114)
T d1uewa_          88 IKDAGL   93 (114)
T ss_dssp             HHHTTT
T ss_pred             HHcCCC
Confidence            998754

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=6.4e-19  Score=129.70  Aligned_cols=81  Identities=17%  Similarity=0.292  Sum_probs=71.5

Q ss_pred             ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC-C
Q psy8436           4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD-S   82 (306)
Q Consensus         4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~-~   82 (306)
                      ..|+|.|.|+. ++|||+|.++      .++||..|.++|||+++| |++||+||+|||++|.+++|++++++|+.++ .
T Consensus        15 ~pr~v~l~k~~-~g~Gf~i~g~------~~v~V~~V~~~spA~~~G-L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~   86 (111)
T d1vaea_          15 PPRGIHFTVEE-GDLGFTLRGN------TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGE   86 (111)
T ss_dssp             CCCCCCEECCS-SCCSCCEESS------SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTS
T ss_pred             CCEEEEEEECC-CccCEEEECC------ccEEEEEEcCCChHHhcc-cCcccEEEEECCEEcCCCCHHHHHHHHHcCCCC
Confidence            35788999965 5899999864      469999999999999999 9999999999999999999999999999984 5


Q ss_pred             eEEEEEEeCC
Q psy8436          83 HVEIVICRNP   92 (306)
Q Consensus        83 ~v~L~v~r~~   92 (306)
                      .|+|+|.+..
T Consensus        87 ~v~l~v~~~~   96 (111)
T d1vaea_          87 EVEMKVVSLL   96 (111)
T ss_dssp             EECEEEECEE
T ss_pred             eEEEEEECCC
Confidence            7899887643

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=2.5e-18  Score=129.44  Aligned_cols=77  Identities=31%  Similarity=0.610  Sum_probs=66.6

Q ss_pred             EEEEEEeCCCCCcccEEEEcCCCCCCC-CCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         222 FTVTFQKGPGQKSLGFSIVGGRDSPKG-NLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       222 ~~v~l~k~~~~~~lG~~l~gg~~~~~~-~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      +.|.+.+.. ..+|||+|.|+.+.+.+ ..++||..|.++|+|+++|+|++||+|++|||+++.+++|+||+++||++.
T Consensus        27 ~~v~l~~~~-~~glG~~i~gg~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~  104 (127)
T d1wg6a_          27 LEIPLNDSG-SAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSM  104 (127)
T ss_dssp             EEEECSSST-TTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHH
T ss_pred             EEEEEccCC-CCcEeEEEEeecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhcc
Confidence            455555543 36899999998877654 358999999999999999999999999999999999999999999999864

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=7.5e-18  Score=126.54  Aligned_cols=89  Identities=20%  Similarity=0.373  Sum_probs=75.2

Q ss_pred             ccEEEEEEeC-CCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-C
Q psy8436           4 QFKVFRVVKD-DSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-D   81 (306)
Q Consensus         4 ~~~~v~l~r~-~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~   81 (306)
                      +++.|+|.|. ..++|||+|+++.+.....||||..|.|+|||+++|+|++||+||+|||++|.  ++.+++.+|+.+ +
T Consensus        19 e~~~V~l~k~~~~~~lG~~i~~~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~--~~~~~~~~l~~~~~   96 (124)
T d1wh1a_          19 ELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSEEN   96 (124)
T ss_dssp             EECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCSSC
T ss_pred             eeEEEEEEECCCCCcccEEEEecCCCCCCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECC--CHHHHHHHHhhCCC
Confidence            5677888875 45689999998866544578999999999999999999999999999999998  567888888876 6


Q ss_pred             CeEEEEEEeCCCC
Q psy8436          82 SHVEIVICRNPDD   94 (306)
Q Consensus        82 ~~v~L~v~r~~~~   94 (306)
                      ..|.|+|.|....
T Consensus        97 ~~v~l~v~r~~~~  109 (124)
T d1wh1a_          97 KNFSLLIARPELQ  109 (124)
T ss_dssp             CSCCEEEEECSSC
T ss_pred             CcEEEEEEeCCCc
Confidence            6799999886543

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=2.7e-18  Score=124.39  Aligned_cols=77  Identities=16%  Similarity=0.270  Sum_probs=70.3

Q ss_pred             CCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCC
Q psy8436          14 DSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD   93 (306)
Q Consensus        14 ~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~   93 (306)
                      .+.+|||+|.++.+..  .++||+.|.+++||++.+ |++||+||+|||+++.+++|++|+.+|+.+++.|+|+|.|...
T Consensus        13 g~~~~Gf~l~gg~d~~--~~i~V~~v~~g~~A~~~~-L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~v~l~V~R~~~   89 (103)
T d1v5la_          13 GPAPWGFRLSGGIDFN--QPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET   89 (103)
T ss_dssp             SSSCCSBCCEEETTTT--EEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCTT
T ss_pred             CCCCCCEEEEeecCCC--CCEEEEEccCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCc
Confidence            4678999999997654  679999999999999877 9999999999999999999999999999999999999998653

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=2.9e-17  Score=119.64  Aligned_cols=83  Identities=22%  Similarity=0.289  Sum_probs=70.2

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCC---------CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHH
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPK---------GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE  290 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~---------~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~e  290 (306)
                      +.++|.|.|... .+|||.+.|+...+.         ...++||..|.++|||+++| |++||+|++|||+++.+++|++
T Consensus         5 ~~~tV~l~r~~~-~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aG-L~~GD~Il~INg~~v~~~~h~e   82 (104)
T d1q3oa_           5 KEKTVLLQKKDS-EGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQ   82 (104)
T ss_dssp             EEEEEEEECCTT-SCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHH
T ss_pred             ceEEEEEEECCC-CccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEcCeEcCCCCHHH
Confidence            457899988764 789999998875431         23478999999999999998 9999999999999999999999


Q ss_pred             HHHHHhhcCCCceec
Q psy8436         291 AIAMFKDIFPQSSKL  305 (306)
Q Consensus       291 av~~Lk~~~~~~~~l  305 (306)
                      ++++||+++ ..+.|
T Consensus        83 vv~~ik~~~-~~v~L   96 (104)
T d1q3oa_          83 VVNMIRQGG-NTLMV   96 (104)
T ss_dssp             HHHHHHHTT-TEEEE
T ss_pred             HHHHHHcCC-CeEEE
Confidence            999999864 44544

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.9e-17  Score=119.32  Aligned_cols=79  Identities=23%  Similarity=0.409  Sum_probs=69.7

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ..++.|.|.|..+ .+|||++.++.      .++||.+|.++|+|+++|+|++||+|++|||+++.+++|++|+++||++
T Consensus        17 ~~i~~V~l~k~~~-~~lG~~v~~~~------~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~   89 (100)
T d1va8a1          17 ETVKIVRIEKARD-IPLGATVRNEM------DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDM   89 (100)
T ss_dssp             EECEEEEEEECTT-CCCCEEEEECS------SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             ceEEEEEEEeCCC-CCccEEEEecC------CCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcC
Confidence            3467899999864 78999998765      4899999999999999999999999999999999999999999999998


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      +. .++|
T Consensus        90 ~~-~v~L   95 (100)
T d1va8a1          90 HG-TLTF   95 (100)
T ss_dssp             CE-EEEE
T ss_pred             CC-eEEE
Confidence            74 4544

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.5e-18  Score=124.70  Aligned_cols=78  Identities=40%  Similarity=0.655  Sum_probs=70.5

Q ss_pred             ccceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       218 ~~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      ..+.++|+|.|..  .+|||+|.++.+..   .++||..|.++|+|+++|.|++||+|++|||+++.+++|+||+++|++
T Consensus         9 ~~e~~~v~l~k~~--~glG~~i~gg~~~~---~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~   83 (103)
T d1wfva_           9 DFDYFTVDMEKGA--KGFGFSIRGGREYK---MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKS   83 (103)
T ss_dssp             CSCCEECCEECCT--TSSSBCCEEETTTT---EEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             CceEEEEEEEeCC--CccCEEEEeeccCC---CCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHc
Confidence            3677899999874  68999999988753   589999999999999999999999999999999999999999999998


Q ss_pred             cCC
Q psy8436         298 IFP  300 (306)
Q Consensus       298 ~~~  300 (306)
                      .+.
T Consensus        84 ~~~   86 (103)
T d1wfva_          84 GGR   86 (103)
T ss_dssp             HCS
T ss_pred             CCC
Confidence            764

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=8.9e-18  Score=126.01  Aligned_cols=84  Identities=25%  Similarity=0.322  Sum_probs=75.0

Q ss_pred             cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--
Q psy8436           3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--   80 (306)
Q Consensus         3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--   80 (306)
                      .++.+++|.+. ..||||.|..+.     .+++|..|.|+|||+++|+|++||+||+|||++|.+++|++|+++|+.+  
T Consensus        26 ~~~~~v~l~~g-~~GlG~~i~~~~-----~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~   99 (126)
T d1wifa_          26 NKVIQTKLTVG-NLGLGLVVIQNG-----PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITI   99 (126)
T ss_dssp             CCEEEEEEECC-TTCCCCCEEEET-----TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCS
T ss_pred             CcEEEEEEeeC-CCcEEEEEEecC-----CcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCC
Confidence            35778889984 568999998753     4699999999999999999999999999999999999999999999987  


Q ss_pred             CCeEEEEEEeCC
Q psy8436          81 DSHVEIVICRNP   92 (306)
Q Consensus        81 ~~~v~L~v~r~~   92 (306)
                      +..|+|+|.|..
T Consensus       100 g~~v~L~v~R~~  111 (126)
T d1wifa_         100 GTVLQIKAYRGF  111 (126)
T ss_dssp             SCEEEEEEESSS
T ss_pred             CCEEEEEEEeCC
Confidence            468999999974

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4e-17  Score=121.21  Aligned_cols=74  Identities=30%  Similarity=0.434  Sum_probs=66.9

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .+.+.|+|.|..  .+|||+|.++.+     .|+||..|.++|+|+++| |++||+||+|||+++.+++|++|+.+|++.
T Consensus        18 ~~~r~v~l~k~~--~glG~~i~gg~~-----~gi~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~~l~~~   89 (117)
T d1uita_          18 EEPRHVKVQKGS--EPLGISIVSGEK-----GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQ   89 (117)
T ss_dssp             CCCEEEEEECSS--CCCCEEEEECTT-----SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSC
T ss_pred             CCCEEEEEEeCC--CccCEEEEccCC-----CCEEEEEEecCChHHhCC-CCCCCEeeeECCcccCCCCHHHHHHHHHCC
Confidence            456789999874  689999999886     589999999999999987 999999999999999999999999999987


Q ss_pred             CC
Q psy8436         299 FP  300 (306)
Q Consensus       299 ~~  300 (306)
                      ..
T Consensus        90 ~~   91 (117)
T d1uita_          90 CD   91 (117)
T ss_dssp             CS
T ss_pred             CC
Confidence            53

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.6e-17  Score=117.86  Aligned_cols=75  Identities=35%  Similarity=0.558  Sum_probs=62.5

Q ss_pred             EEEEEEeCCCCCcccEEEEcCCCCCC-----CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436         222 FTVTFQKGPGQKSLGFSIVGGRDSPK-----GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK  296 (306)
Q Consensus       222 ~~v~l~k~~~~~~lG~~l~gg~~~~~-----~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk  296 (306)
                      ..|.+.+.   .+|||+|.|+.+...     ++.||||+.|.++|||++  .|++||+||+|||+++.+++|++|+++|+
T Consensus        13 v~v~~~~~---~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~--~L~~GD~Il~VNg~~v~~~t~~eav~~l~   87 (103)
T d2h3la1          13 IRVRVEKD---PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLK   87 (103)
T ss_dssp             EEEEEECS---SSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTT--TCCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             EEEEEccC---CCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHh--ccCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            34455554   579999999876532     246899999999999975  59999999999999999999999999999


Q ss_pred             hcCCC
Q psy8436         297 DIFPQ  301 (306)
Q Consensus       297 ~~~~~  301 (306)
                      +++..
T Consensus        88 ~~~~~   92 (103)
T d2h3la1          88 TFQNT   92 (103)
T ss_dssp             HCCSE
T ss_pred             hCCCe
Confidence            97653

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=3.1e-18  Score=125.95  Aligned_cols=74  Identities=23%  Similarity=0.311  Sum_probs=66.1

Q ss_pred             EEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCC
Q psy8436         222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQ  301 (306)
Q Consensus       222 ~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~  301 (306)
                      ++|+|.|..  .+|||+|.++       .++||..|.++|||+++| |++||+|++|||++|.+++|+|++++||+++..
T Consensus        17 r~v~l~k~~--~g~Gf~i~g~-------~~v~V~~V~~~spA~~~G-L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~   86 (111)
T d1vaea_          17 RGIHFTVEE--GDLGFTLRGN-------TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGE   86 (111)
T ss_dssp             CCCCEECCS--SCCSCCEESS-------SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTS
T ss_pred             EEEEEEECC--CccCEEEECC-------ccEEEEEEcCCChHHhcc-cCcccEEEEECCEEcCCCCHHHHHHHHHcCCCC
Confidence            468888885  5899999864       379999999999999999 999999999999999999999999999998877


Q ss_pred             ceec
Q psy8436         302 SSKL  305 (306)
Q Consensus       302 ~~~l  305 (306)
                      .+.|
T Consensus        87 ~v~l   90 (111)
T d1vaea_          87 EVEM   90 (111)
T ss_dssp             EECE
T ss_pred             eEEE
Confidence            6654

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.6e-17  Score=120.30  Aligned_cols=74  Identities=30%  Similarity=0.468  Sum_probs=65.5

Q ss_pred             EEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC
Q psy8436         223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP  300 (306)
Q Consensus       223 ~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~  300 (306)
                      .|.+.|..  .+|||+|.++.+..  ..++||..|.++|+|+++|+|++||+||+|||+++.+++|+||+++||+++.
T Consensus         9 vv~~~k~~--~~lG~~i~gg~~~~--~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~   82 (103)
T d1ufxa_           9 LVRVKKSA--ATLGIAIEGGANTR--QPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFK   82 (103)
T ss_dssp             EEEEECCS--SSCCEEEECBTTSS--CSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHH
T ss_pred             EEEEEeCC--CccCEEEeeecCCC--CCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccC
Confidence            46777764  68999999988754  2468999999999999999999999999999999999999999999998753

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.3e-17  Score=121.72  Aligned_cols=78  Identities=22%  Similarity=0.430  Sum_probs=68.0

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhh-cCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAE-NEKLREGDEIIAINGVPLENKTHAEAIAMFKD  297 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~-~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~  297 (306)
                      ...++|.|.|.. ..+|||+|.|+.+..   .++||..|.++|+|++ +|+|++||+||+|||+++.+++|+||+++||+
T Consensus         7 ~~~~~v~l~~~~-~g~lG~~l~gg~d~~---~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~   82 (106)
T d2cs5a1           7 DNLVLIRMKPDE-NGRFGFNVKGGYDQK---MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKA   82 (106)
T ss_dssp             SCCEEEEECCCS-SSCCSEEEEEEGGGT---EEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHH
T ss_pred             CcEEEEEEEeCC-CCCccEEEEeeecCC---CCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            346788888876 367999999988643   6899999999999998 47899999999999999999999999999998


Q ss_pred             cCC
Q psy8436         298 IFP  300 (306)
Q Consensus       298 ~~~  300 (306)
                      +..
T Consensus        83 ~~~   85 (106)
T d2cs5a1          83 SCE   85 (106)
T ss_dssp             HHH
T ss_pred             CCC
Confidence            653

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.3e-17  Score=122.57  Aligned_cols=79  Identities=24%  Similarity=0.347  Sum_probs=69.3

Q ss_pred             ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      .++.|+|.|.++ .+|||+|+++.+..  ..++||..|.++|+|+++|.|++||+||+|||++|.+++|++|+++|++.+
T Consensus        15 ~p~~V~l~k~~~-~~lGi~i~~~~~~~--~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~   91 (117)
T d1v62a_          15 GPLMVEIVKTPG-SALGISLTTTSLRN--KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASIS   91 (117)
T ss_dssp             SSEEEEEECCTT-CCCCCEEEEECCSS--SCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCS
T ss_pred             CCEEEEEEcCCC-CCcCEEEEeeccCC--CCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcCC
Confidence            346799999864 68999999876543  258999999999999999999999999999999999999999999999875


Q ss_pred             CC
Q psy8436         300 PQ  301 (306)
Q Consensus       300 ~~  301 (306)
                      ..
T Consensus        92 ~~   93 (117)
T d1v62a_          92 EK   93 (117)
T ss_dssp             SE
T ss_pred             Cc
Confidence            43

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.1e-17  Score=113.61  Aligned_cols=74  Identities=20%  Similarity=0.275  Sum_probs=64.2

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .++++|+|.|... ++|||++.++          +|.+|.++|||+++| |++||+|++|||+++.+++|+||+++|+++
T Consensus         3 ~~pr~V~l~k~~~-g~~Gf~i~~g----------~V~~v~~g~~A~~~G-l~~GD~Il~INg~~v~~~t~~~~~~ll~~~   70 (82)
T d1r6ja_           3 MDPRTITMHKDST-GHVGFIFKNG----------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTS   70 (82)
T ss_dssp             TCCEEEEEECCTT-SCCCEEEETT----------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHS
T ss_pred             CCCEEEEEEeCCC-CCcCEEEEEE----------EEEEECCCChHHhcC-cCCCCEEEEeCCeEEeeCCHHHHHHHHHcC
Confidence            3567899999863 6799999742          699999999999999 999999999999999999999999999987


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      +. .++|
T Consensus        71 ~~-~v~l   76 (82)
T d1r6ja_          71 GT-VVTI   76 (82)
T ss_dssp             CS-EEEE
T ss_pred             CC-EEEE
Confidence            54 4443

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.6e-17  Score=111.03  Aligned_cols=71  Identities=21%  Similarity=0.328  Sum_probs=62.3

Q ss_pred             EEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCce
Q psy8436         224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSS  303 (306)
Q Consensus       224 v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~  303 (306)
                      |+|.|+.  .+|||++.++       .++||..|.++|||+++| |++||+|++|||+++.+++|.+++.+|++.+. .+
T Consensus         1 v~l~r~~--~g~Gf~l~~~-------~~~~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~-~v   69 (77)
T d2f5ya1           1 ITIPRGK--DGFGFTICCD-------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPS-EI   69 (77)
T ss_dssp             EEEECBT--TBTSEEEECS-------SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSS-EE
T ss_pred             CEEecCC--CcccEEEECC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EE
Confidence            5677885  6799999863       479999999999999999 99999999999999999999999999998764 34


Q ss_pred             ec
Q psy8436         304 KL  305 (306)
Q Consensus       304 ~l  305 (306)
                      .|
T Consensus        70 ~L   71 (77)
T d2f5ya1          70 IL   71 (77)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1e-16  Score=110.24  Aligned_cols=72  Identities=24%  Similarity=0.433  Sum_probs=61.7

Q ss_pred             EEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCC
Q psy8436         222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQ  301 (306)
Q Consensus       222 ~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~  301 (306)
                      .+|.|.|.+...+|||++.++          +|.+|.++|+|+++| |++||+|++|||+++.+++|++|+++|+++.. 
T Consensus         2 ~tv~l~r~~~~~~lGf~i~~g----------~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~-   69 (79)
T d1y7na1           2 TTVLIRRPDLRYQLGFSVQNG----------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVG-   69 (79)
T ss_dssp             EEEEEEESSTTSCCCEEEETT----------EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCCE-
T ss_pred             EEEEEEcCCCCCCcCEEEECC----------EEEEEcCCCHHHHCC-CCCCCEEEEECCEEeCCCCHHHHHHHHHcCCC-
Confidence            467888876568899999742          799999999999976 99999999999999999999999999998654 


Q ss_pred             ceec
Q psy8436         302 SSKL  305 (306)
Q Consensus       302 ~~~l  305 (306)
                      .+.|
T Consensus        70 ~v~l   73 (79)
T d1y7na1          70 EIHM   73 (79)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            3443

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=5.3e-17  Score=120.38  Aligned_cols=65  Identities=35%  Similarity=0.541  Sum_probs=60.4

Q ss_pred             CcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436         233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF  299 (306)
Q Consensus       233 ~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~  299 (306)
                      .+|||+|.||.+.+.  .++||..|.++|+|+++|+|++||+|++|||+++.+++|++|+.+||+++
T Consensus        28 ~~lG~~i~gg~d~~~--~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~   92 (118)
T d1v6ba_          28 GSLDLALEGGVDSPV--GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAW   92 (118)
T ss_dssp             SCCCCEEEEBTTSSS--CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHH
T ss_pred             CCCCEEEEeeecCCC--CCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcc
Confidence            579999999988764  37999999999999999999999999999999999999999999999864

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=6.4e-17  Score=117.58  Aligned_cols=82  Identities=29%  Similarity=0.580  Sum_probs=69.7

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCC---CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPK---GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMF  295 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~---~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~L  295 (306)
                      .+.++|+|.|..+ .+|||+|.++.+...   +..++||..|.++|+|+  ++|++||+|++|||+++.+++|++|+++|
T Consensus         6 ~e~~tV~l~k~~~-~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~--~~L~~GD~Il~INg~~v~~~~~~ev~~ll   82 (104)
T d2csja1           6 WEQYTVTLQKDSK-RGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHSFAVQQL   82 (104)
T ss_dssp             EEEEEEEEECCSS-STTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH--HHBCTTCEEEEESSCBCBTCCHHHHHHHH
T ss_pred             CccEEEEEEeCCC-CCcCEEEEcccCCCccccCCCCEEEEEECCCChhh--cCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4567899999864 789999999887543   24689999999999996  44999999999999999999999999999


Q ss_pred             hhcCCCcee
Q psy8436         296 KDIFPQSSK  304 (306)
Q Consensus       296 k~~~~~~~~  304 (306)
                      |+++. .+.
T Consensus        83 ~~~~~-~v~   90 (104)
T d2csja1          83 RKSGK-IAA   90 (104)
T ss_dssp             HHSCS-EEE
T ss_pred             HcCCC-EEE
Confidence            98754 443

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.2e-16  Score=119.95  Aligned_cols=84  Identities=30%  Similarity=0.505  Sum_probs=69.9

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .+++.|+|.|.....+|||+|+++.+.+. ..||||..|.++|||+++|+|++||+|++|||+++.+  +.+++.+|+..
T Consensus        18 ~e~~~V~l~k~~~~~~lG~~i~~~~~~~~-~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~--~~~~~~~l~~~   94 (124)
T d1wh1a_          18 LELEEVDLYRMNSQDKLGLTVCYRTDDED-DIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSE   94 (124)
T ss_dssp             CEECCBCCCCSSTTCCCCEEEECCCCCSS-CCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCS
T ss_pred             ceeEEEEEEECCCCCcccEEEEecCCCCC-CCCEEEEEECCCChhhhhcccCCCCEEEEECCEECCC--HHHHHHHHhhC
Confidence            45667888886555789999998876542 3689999999999999999999999999999999975  67888899887


Q ss_pred             CCCceec
Q psy8436         299 FPQSSKL  305 (306)
Q Consensus       299 ~~~~~~l  305 (306)
                      ....+.|
T Consensus        95 ~~~~v~l  101 (124)
T d1wh1a_          95 ENKNFSL  101 (124)
T ss_dssp             SCCSCCE
T ss_pred             CCCcEEE
Confidence            7665543

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.2e-16  Score=118.50  Aligned_cols=80  Identities=29%  Similarity=0.574  Sum_probs=66.9

Q ss_pred             EEEEEEeCCC-----CCcccEEEEcCCCCCC--CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy8436         222 FTVTFQKGPG-----QKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM  294 (306)
Q Consensus       222 ~~v~l~k~~~-----~~~lG~~l~gg~~~~~--~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~  294 (306)
                      ..+.+.+...     ..+|||+|.|+.+.+.  +..|+||..|.++|+|+++|+|++||+|++|||+++.+++|+||+++
T Consensus        14 ~~v~l~r~~~~~~~~g~glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~   93 (117)
T d1ujda_          14 ARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSI   93 (117)
T ss_dssp             EEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             eeEEEEecccccccCCcccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHH
Confidence            3456655431     1479999999877643  34589999999999999999999999999999999999999999999


Q ss_pred             HhhcCCC
Q psy8436         295 FKDIFPQ  301 (306)
Q Consensus       295 Lk~~~~~  301 (306)
                      |++++..
T Consensus        94 i~~~~~~  100 (117)
T d1ujda_          94 ISQQSGE  100 (117)
T ss_dssp             HSCCSSC
T ss_pred             HHcCCCe
Confidence            9987654

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.4e-16  Score=111.89  Aligned_cols=82  Identities=20%  Similarity=0.348  Sum_probs=67.1

Q ss_pred             ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-
Q psy8436           2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-   80 (306)
Q Consensus         2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-   80 (306)
                      +.++.+|+|.|.. .+|||+|.++...     .+|..+   .+|+.++.|++||+||+|||++|.+++|++|+++||++ 
T Consensus         8 ~~e~~~v~l~k~~-~glGf~i~g~~~~-----~~~~~~---~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~   78 (96)
T d1ujva_           8 QAELMTLTIVKGA-QGFGFTIADSPTG-----QRVKQI---LDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCP   78 (96)
T ss_dssp             CCCCEEEEEECCS-SSSSEEEEEETTE-----EEEEEE---SCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             CceEEEEEEEeCC-CcccEEEEeeCCC-----ceEeec---cCcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4678999999965 5899999987653     344333   34555566999999999999999999999999999987 


Q ss_pred             -CCeEEEEEEeCC
Q psy8436          81 -DSHVEIVICRNP   92 (306)
Q Consensus        81 -~~~v~L~v~r~~   92 (306)
                       +..|+|+|.|..
T Consensus        79 ~g~~v~l~v~R~~   91 (96)
T d1ujva_          79 IGSETSLIIHRGS   91 (96)
T ss_dssp             TTSEEEEEEECCS
T ss_pred             CCCEEEEEEEECC
Confidence             568999999853

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=5e-17  Score=115.80  Aligned_cols=76  Identities=38%  Similarity=0.540  Sum_probs=64.1

Q ss_pred             EEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCC
Q psy8436         222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQ  301 (306)
Q Consensus       222 ~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~  301 (306)
                      .+|++..   ..+|||+|.|+.+..   .++||..|.+++||+++| |++||+||+|||+++.+++|+||+++|++++ .
T Consensus         8 ~tv~~~g---~~~~Gf~i~gg~d~~---~~i~V~~v~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-~   79 (94)
T d1vb7a_           8 LTVDVAG---PAPWGFRISGGRDFH---TPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSA-S   79 (94)
T ss_dssp             EEEEECS---SSCCSBCCEEETTTT---EEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCC-S
T ss_pred             EEEEEEC---CCcCCEEEEeeccCC---CCEEEEeccCCChhhhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-C
Confidence            4555532   268999999988753   589999999999999877 9999999999999999999999999999875 4


Q ss_pred             ceec
Q psy8436         302 SSKL  305 (306)
Q Consensus       302 ~~~l  305 (306)
                      .+.|
T Consensus        80 ~v~L   83 (94)
T d1vb7a_          80 PLRL   83 (94)
T ss_dssp             SEEE
T ss_pred             eEEE
Confidence            4544

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=2e-16  Score=118.53  Aligned_cols=79  Identities=16%  Similarity=0.280  Sum_probs=69.2

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      ...+.++|.++.  .+|||.+....      .++||..|.++|+|+++|+|++||+|++|||+++.+++|++|+++||..
T Consensus        26 ~~~~~v~l~~g~--~GlG~~i~~~~------~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~   97 (126)
T d1wifa_          26 NKVIQTKLTVGN--LGLGLVVIQNG------PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNI   97 (126)
T ss_dssp             CCEEEEEEECCT--TCCCCCEEEET------TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSC
T ss_pred             CcEEEEEEeeCC--CcEEEEEEecC------CcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCC
Confidence            456788998885  68999998654      3799999999999999999999999999999999999999999999998


Q ss_pred             CC-Cceec
Q psy8436         299 FP-QSSKL  305 (306)
Q Consensus       299 ~~-~~~~l  305 (306)
                      +. ..++|
T Consensus        98 ~~g~~v~L  105 (126)
T d1wifa_          98 TIGTVLQI  105 (126)
T ss_dssp             CSSCEEEE
T ss_pred             CCCCEEEE
Confidence            74 45554

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=3.2e-16  Score=113.44  Aligned_cols=76  Identities=25%  Similarity=0.437  Sum_probs=64.0

Q ss_pred             EEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCC
Q psy8436         222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQ  301 (306)
Q Consensus       222 ~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~  301 (306)
                      ..|++...   .+|||+|.++.+..   .++||..|.++++|++ ++|++||+|++|||+++.+++|+||+++|++.+. 
T Consensus         7 ~~v~~~g~---~g~Gf~i~gg~d~~---~~v~V~~v~~g~~a~~-~~L~~GD~Il~INg~~v~~~t~~eav~li~~~~~-   78 (103)
T d1wf7a_           7 GSVSLVGP---APWGFRLQGGKDFN---MPLTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTG-   78 (103)
T ss_dssp             EEEEEESS---SCCSCCEEEETTTT---EEEEECCCCTTCHHHH-TTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSS-
T ss_pred             eEEEEECC---CCccEEEEcccCCC---CCEEEEecCCCChHHH-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-
Confidence            45666555   57999999998753   5899999999999986 4599999999999999999999999999999754 


Q ss_pred             ceec
Q psy8436         302 SSKL  305 (306)
Q Consensus       302 ~~~l  305 (306)
                      .+.|
T Consensus        79 ~v~L   82 (103)
T d1wf7a_          79 SLNM   82 (103)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            4443

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.61  E-value=2.3e-15  Score=106.67  Aligned_cols=75  Identities=24%  Similarity=0.492  Sum_probs=66.1

Q ss_pred             CCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc-CCCeEEEEEEeCC
Q psy8436          15 SNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN-KDSHVEIVICRNP   92 (306)
Q Consensus        15 ~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~-~~~~v~L~v~r~~   92 (306)
                      -.|+||++.......  .+++|..|.++|||+++| |++||+|++|||+++.++++++++.+|+. .+..|+|+|.|..
T Consensus         4 ~~GiGi~i~~~~~~~--~~v~V~~v~~gsPA~~AG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g   79 (92)
T d1fc6a3           4 VTGVGLEITYDGGSG--KDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPG   79 (92)
T ss_dssp             CBBCSEEEEECTTCS--SCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETT
T ss_pred             eEEEEEEEEEcCCCC--ceEEEEEecCCCChhHHh-hHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEECC
Confidence            358999997664332  579999999999999999 99999999999999999999999999995 5678999999964

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=3.6e-16  Score=113.04  Aligned_cols=65  Identities=34%  Similarity=0.428  Sum_probs=58.8

Q ss_pred             CcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCC
Q psy8436         233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQ  301 (306)
Q Consensus       233 ~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~  301 (306)
                      .+|||+|.|+.|..   .++||..|.++++|++++ |++||+||+|||+++.+++|+||+++|++++..
T Consensus        15 ~~~Gf~l~gg~d~~---~~i~V~~v~~g~~A~~~~-L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~   79 (103)
T d1v5la_          15 APWGFRLSGGIDFN---QPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQ   79 (103)
T ss_dssp             SCCSBCCEEETTTT---EEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCSE
T ss_pred             CCCCEEEEeecCCC---CCEEEEEccCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            67999999998753   689999999999999765 999999999999999999999999999987643

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=9.4e-15  Score=104.26  Aligned_cols=76  Identities=32%  Similarity=0.443  Sum_probs=61.0

Q ss_pred             cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436         219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI  298 (306)
Q Consensus       219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~  298 (306)
                      .+.++|+|.|++  .+|||+|.++.+      +.+|..+   .+|+.+++|++||+||+|||+++.+++|+||+++||+.
T Consensus         9 ~e~~~v~l~k~~--~glGf~i~g~~~------~~~~~~~---~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~   77 (96)
T d1ujva_           9 AELMTLTIVKGA--QGFGFTIADSPT------GQRVKQI---LDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDC   77 (96)
T ss_dssp             CCCEEEEEECCS--SSSSEEEEEETT------EEEEEEE---SCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHS
T ss_pred             ceEEEEEEEeCC--CcccEEEEeeCC------CceEeec---cCcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            557889999985  589999998775      4444443   34666677999999999999999999999999999998


Q ss_pred             CCC-ceec
Q psy8436         299 FPQ-SSKL  305 (306)
Q Consensus       299 ~~~-~~~l  305 (306)
                      +.+ .++|
T Consensus        78 ~~g~~v~l   85 (96)
T d1ujva_          78 PIGSETSL   85 (96)
T ss_dssp             CTTSEEEE
T ss_pred             CCCCEEEE
Confidence            754 4443

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.50  E-value=4e-14  Score=100.12  Aligned_cols=69  Identities=17%  Similarity=0.282  Sum_probs=60.4

Q ss_pred             CcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436         233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL  305 (306)
Q Consensus       233 ~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l  305 (306)
                      .++|+.+....+.   ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++++|+..++..+.|
T Consensus         5 ~GiGi~i~~~~~~---~~~v~V~~v~~gsPA~~AG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l   73 (92)
T d1fc6a3           5 TGVGLEITYDGGS---GKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEV   73 (92)
T ss_dssp             BBCSEEEEECTTC---SSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEE
T ss_pred             EEEEEEEEEcCCC---CceEEEEEecCCCChhHHh-hHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEE
Confidence            6899998765433   2579999999999999999 9999999999999999999999999999877777765

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.38  E-value=7.5e-13  Score=92.72  Aligned_cols=70  Identities=19%  Similarity=0.284  Sum_probs=58.0

Q ss_pred             ceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEEEEEeCC
Q psy8436          17 ELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEIVICRNP   92 (306)
Q Consensus        17 ~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L~v~r~~   92 (306)
                      +||+.+......   .|++|..|.|+|||+++| |+.||+|++|||+.+.++  .+...+++.  .++.+.|+|.|..
T Consensus         4 ~LGv~~~~~~~~---~Gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~i~~~--~~~~~~i~~~~~g~~v~l~v~r~~   75 (88)
T d2z9ia1           4 SLGVQVTNDKDT---LGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDPS   75 (88)
T ss_dssp             ECCEEEECCC-C---CSEEEEEECTTSTTGGGT-CCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEEETT
T ss_pred             EEeEEEEecCCC---CcEEEEEECCCCHHHHcC-CCCCCEEEEeCCCcCCcH--HHHHHHHHhCCCCCEEEEEEEECC
Confidence            689999866554   689999999999999999 999999999999999854  555555544  4789999999853

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=1.7e-12  Score=90.74  Aligned_cols=59  Identities=25%  Similarity=0.428  Sum_probs=55.2

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~   93 (306)
                      .|++|..|.|+|||+++| |++||.|++|||+++.  +++++..+++.++..+.|+|.|...
T Consensus        25 ~Gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~~~   83 (88)
T d1ky9b2          25 QGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQRGDS   83 (88)
T ss_dssp             SCCCBCCCCSSCTTGGGT-CCSSCEEEEETTEECS--SHHHHHHHTTTCCSCCCEEEESSSC
T ss_pred             CeEEEEEECCCCHHHHcC-CCCCcEEEEECCEEcC--CHHHHHHHHHhCCCEEEEEEEECCE
Confidence            689999999999999999 9999999999999998  6789999999998899999999764

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.11  E-value=1.1e-10  Score=81.45  Aligned_cols=66  Identities=20%  Similarity=0.368  Sum_probs=53.3

Q ss_pred             CcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC-CCceec
Q psy8436         233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF-PQSSKL  305 (306)
Q Consensus       233 ~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~-~~~~~l  305 (306)
                      ..||+.+....+.    .|++|.+|.++|||+++| |++||+|++|||+++.+  ..++...|+... +..+.|
T Consensus         3 ~~LGv~~~~~~~~----~Gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~i~~--~~~~~~~i~~~~~g~~v~l   69 (88)
T d2z9ia1           3 ASLGVQVTNDKDT----LGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINS--ADALVAAVRSKAPGATVAL   69 (88)
T ss_dssp             EECCEEEECCC-C----CSEEEEEECTTSTTGGGT-CCTTCEEEEETTEECCS--HHHHHHHHHTSCTTCEEEE
T ss_pred             CEEeEEEEecCCC----CcEEEEEECCCCHHHHcC-CCCCCEEEEeCCCcCCc--HHHHHHHHHhCCCCCEEEE
Confidence            3689998766553    589999999999999999 99999999999999976  467777776654 455554

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.08  E-value=2.7e-10  Score=79.58  Aligned_cols=69  Identities=12%  Similarity=0.217  Sum_probs=56.2

Q ss_pred             ceeEEEEecCCCCcCCCeEEEEeCCC--------ChhcccCCC-CCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeEEE
Q psy8436          17 ELGIYIERQDGGAHFSPYLISHIEPG--------GAIHRDGRF-HVGDELIKVNDKRLKGLTIQEAREALNNK-DSHVEI   86 (306)
Q Consensus        17 ~lG~~i~gg~~~~~~~gi~V~~V~~g--------s~A~~~G~L-~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~v~L   86 (306)
                      .||+.+.-..     .++.|..|.+|        |||+++| | |+||+|++|||+++.++  .++.++|+.. +..|.|
T Consensus         2 ~lG~d~~~~~-----~~~~I~~i~~G~~~~~~~~sPa~~aG-l~k~GD~I~~IdG~~v~~~--~~~~~~l~g~~G~~V~L   73 (91)
T d1k32a1           2 RIACDFKLDG-----DHYVVAKAYAGDYSNEGEKSPIFEYG-IDPTGYLIEDIDGETVGAG--SNIYRVLSEKAGTSARI   73 (91)
T ss_dssp             BCSEEEEEET-----TEEEEEEECBSCTTSTTCBCGGGGGT-CCCTTCEEEEETTEECBTT--BCHHHHHHTTTTSEEEE
T ss_pred             cccEEEEEEC-----CeEEEEEEecCCCCCcccCChhHhcC-CCCCCCEEEEECCEeecCc--ceeEEEEecCCCCEEEE
Confidence            5676665432     35999999988        9999999 6 89999999999999965  4677787765 778999


Q ss_pred             EEEeCCC
Q psy8436          87 VICRNPD   93 (306)
Q Consensus        87 ~v~r~~~   93 (306)
                      +|.|...
T Consensus        74 ~i~R~g~   80 (91)
T d1k32a1          74 RLSGKGG   80 (91)
T ss_dssp             EEECSSS
T ss_pred             EEEeCCC
Confidence            9999654

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.9e-10  Score=81.22  Aligned_cols=58  Identities=22%  Similarity=0.454  Sum_probs=52.5

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~   93 (306)
                      .|++|..|.++|||+++| |++||.|++|||+.+.  +.++...+++ .++.+.|+|.|+..
T Consensus        31 ~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~V~--s~~dl~~~l~-~g~~v~l~v~R~g~   88 (100)
T d1lcya1          31 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVR-TQSQLAVQIRRGRE   88 (100)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHT-TCSSEEEEEEETTE
T ss_pred             CcEEEEEECCCchHhhcC-CCCCcEEEEECCEEcC--CHHHHHHHhc-CCCEEEEEEEECCE
Confidence            589999999999999999 9999999999999998  5678888886 56889999999864

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.93  E-value=1.3e-09  Score=77.93  Aligned_cols=57  Identities=14%  Similarity=0.179  Sum_probs=50.6

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEEEEEeCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEIVICRNP   92 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L~v~r~~   92 (306)
                      .|++|..|.+++||++ + |++||+|++|||+.+.  ++.+...+|+..  ++.|.|+|.|+.
T Consensus         3 ~Gv~V~~V~~~sPA~~-~-L~~GD~I~~ing~~v~--~~~~l~~~i~~~~~G~~v~l~v~R~~   61 (103)
T d2hgaa1           3 DGVQIDSVVPGSPASK-V-LTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITTDQGT   61 (103)
T ss_dssp             CCEEEEEECSSSGGGG-T-SCTTCEEEEETTEECS--SHHHHHHHHTTCCTTCEEEEEETTEE
T ss_pred             CcEEEEEECCCChHHh-c-CCCCCEEEEECCEEcC--CHHHHHHHHhhCCCCCEEEEEEEECC
Confidence            4899999999999985 6 9999999999999998  678888898764  788999998864

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=1.1e-10  Score=83.21  Aligned_cols=60  Identities=20%  Similarity=0.402  Sum_probs=46.3

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEEEEEeCCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEIVICRNPDD   94 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L~v~r~~~~   94 (306)
                      .|++|..|.++|||+++| |++||.|++|||+.+.++  .+....+..  .++.+.|+|.|+...
T Consensus        26 ~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~   87 (99)
T d1sota1          26 QGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISA--LETMDQVAEIRPGSVIPVVVMRDDKQ   87 (99)
T ss_dssp             -CEECCCCCSSSTTTSSS-CCTTCEECBSSSSBCCCS--HHHHHHHHHSCTTCEEEECC-----C
T ss_pred             CccEEEEecCCCCHHHcC-CCcceEEEEECCEecccH--HHHHHHHHcCCCCCEEEEEEEECCEE
Confidence            589999999999999999 999999999999999965  455555543  478899999997654

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.89  E-value=1.6e-09  Score=75.49  Aligned_cols=64  Identities=11%  Similarity=0.107  Sum_probs=53.0

Q ss_pred             cccEEEEcCCCCCCCCCcEEEEEEcCC--------ChhhhcCCC-CCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCcee
Q psy8436         234 SLGFSIVGGRDSPKGNLGIFVKTIFQS--------GQAAENEKL-REGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSK  304 (306)
Q Consensus       234 ~lG~~l~gg~~~~~~~~gi~V~~V~~~--------g~A~~~G~L-~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~  304 (306)
                      .||..+....      .++.|.+|.+|        |||+++| | ++||+|++|||+++.++  .+++++|+..++..+.
T Consensus         2 ~lG~d~~~~~------~~~~I~~i~~G~~~~~~~~sPa~~aG-l~k~GD~I~~IdG~~v~~~--~~~~~~l~g~~G~~V~   72 (91)
T d1k32a1           2 RIACDFKLDG------DHYVVAKAYAGDYSNEGEKSPIFEYG-IDPTGYLIEDIDGETVGAG--SNIYRVLSEKAGTSAR   72 (91)
T ss_dssp             BCSEEEEEET------TEEEEEEECBSCTTSTTCBCGGGGGT-CCCTTCEEEEETTEECBTT--BCHHHHHHTTTTSEEE
T ss_pred             cccEEEEEEC------CeEEEEEEecCCCCCcccCChhHhcC-CCCCCCEEEEECCEeecCc--ceeEEEEecCCCCEEE
Confidence            3665554333      47899999988        9999999 6 89999999999999876  4899999999988887


Q ss_pred             cC
Q psy8436         305 LS  306 (306)
Q Consensus       305 l~  306 (306)
                      |+
T Consensus        73 L~   74 (91)
T d1k32a1          73 IR   74 (91)
T ss_dssp             EE
T ss_pred             EE
Confidence            63

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=2.9e-10  Score=80.17  Aligned_cols=59  Identities=17%  Similarity=0.363  Sum_probs=51.3

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L~v~r~~~   93 (306)
                      .|++|..|.++|||+++| |+.||.|++|||+++.++  .+...++...  ++.+.|+|.|+..
T Consensus        27 ~Gv~V~~V~~~spA~~aG-l~~gDvI~~i~g~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~   87 (94)
T d1ky9a1          27 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGK   87 (94)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred             CCcEEEECCCChhHHHhC-CCcccEEEEECCEEeCCH--HHHHHHHHhCCCCCEEEEEEEECCE
Confidence            589999999999999999 999999999999999954  5666677654  6789999999764

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=98.87  E-value=2.4e-09  Score=74.04  Aligned_cols=59  Identities=14%  Similarity=0.158  Sum_probs=51.4

Q ss_pred             CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEEEEEeCCC
Q psy8436          32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEIVICRNPD   93 (306)
Q Consensus        32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L~v~r~~~   93 (306)
                      .|+.|..+.++++|+++| |++||.|++|||+++.  +.++...+++.  .++.+.|+|.|+..
T Consensus        19 ~G~~v~~v~~~s~~~~aG-l~~GDiI~~ing~~v~--~~~~~~~~~~~~~~~~~~~l~v~R~g~   79 (87)
T d2i6va1          19 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDGQ   79 (87)
T ss_dssp             EEEEEEECSCHHHHHHTT-CCTTCEEEEETTEETT--CHHHHHHHHHTGGGCSEEEEEEEETTE
T ss_pred             EEEEEecCCCCCHHHHCC-CCCCCEEEEECCEEee--cHHHHHHHHHhhccccccEEEEEECCE
Confidence            578899999999999999 9999999999999999  45677777765  37789999999764

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=1e-09  Score=76.23  Aligned_cols=51  Identities=24%  Similarity=0.264  Sum_probs=44.5

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCcee
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSK  304 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~  304 (306)
                      .|++|..|.+++||+++| |++||.|++|||+++.  +++++..+|++.+. .+.
T Consensus        25 ~Gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~--~~~~~~~~l~~~~~-~v~   75 (88)
T d1ky9b2          25 QGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVK--NIAELRKVLDSKPS-VLA   75 (88)
T ss_dssp             SCCCBCCCCSSCTTGGGT-CCSSCEEEEETTEECS--SHHHHHHHTTTCCS-CCC
T ss_pred             CeEEEEEECCCCHHHHcC-CCCCcEEEEECCEEcC--CHHHHHHHHHhCCC-EEE
Confidence            689999999999999998 9999999999999996  56899999987543 443

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.8e-08  Score=71.61  Aligned_cols=50  Identities=20%  Similarity=0.337  Sum_probs=43.2

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCcee
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSK  304 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~  304 (306)
                      .|++|.+|.+++||+++| |++||.|++|||.++.+  .+++.+.|+  ++..+.
T Consensus        31 ~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~V~s--~~dl~~~l~--~g~~v~   80 (100)
T d1lcya1          31 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN--AEDVYEAVR--TQSQLA   80 (100)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHT--TCSSEE
T ss_pred             CcEEEEEECCCchHhhcC-CCCCcEEEEECCEEcCC--HHHHHHHhc--CCCEEE
Confidence            589999999999999999 99999999999999975  578888886  344444

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.62  E-value=3.9e-08  Score=70.10  Aligned_cols=52  Identities=25%  Similarity=0.328  Sum_probs=44.8

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC-CCceec
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF-PQSSKL  305 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~-~~~~~l  305 (306)
                      .|++|.+|.+++||++ + |++||+|++|||..+.+  +.+....|+..+ +..+.|
T Consensus         3 ~Gv~V~~V~~~sPA~~-~-L~~GD~I~~ing~~v~~--~~~l~~~i~~~~~G~~v~l   55 (103)
T d2hgaa1           3 DGVQIDSVVPGSPASK-V-LTPGLVIESINGMPTSN--LTTYSAALKTISVGEVINI   55 (103)
T ss_dssp             CCEEEEEECSSSGGGG-T-SCTTCEEEEETTEECSS--HHHHHHHHTTCCTTCEEEE
T ss_pred             CcEEEEEECCCChHHh-c-CCCCCEEEEECCEEcCC--HHHHHHHHhhCCCCCEEEE
Confidence            4899999999999985 6 99999999999999974  689999998764 666654

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=1.1e-08  Score=71.75  Aligned_cols=53  Identities=26%  Similarity=0.398  Sum_probs=44.9

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC-CCceec
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF-PQSSKL  305 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~-~~~~~l  305 (306)
                      .|++|..|.++|||+++| |++||.|++|||.++.++  .++..+|+..+ +..+.|
T Consensus        27 ~Gv~V~~V~~~spA~~aG-l~~gDvI~~i~g~~v~~~--~~l~~~l~~~~~g~~v~l   80 (94)
T d1ky9a1          27 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTL   80 (94)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEE
T ss_pred             CCcEEEECCCChhHHHhC-CCcccEEEEECCEEeCCH--HHHHHHHHhCCCCCEEEE
Confidence            589999999999999998 999999999999999876  57888887764 444443

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=2.7e-08  Score=70.43  Aligned_cols=53  Identities=23%  Similarity=0.323  Sum_probs=43.3

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC-CCceec
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF-PQSSKL  305 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~-~~~~~l  305 (306)
                      .|++|.+|.++|||+++| |++||.|++|||.++.++  .+....|.+.+ ++.+.|
T Consensus        26 ~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~v~~~--~~l~~~l~~~~~g~~v~l   79 (99)
T d1sota1          26 QGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISA--LETMDQVAEIRPGSVIPV   79 (99)
T ss_dssp             -CEECCCCCSSSTTTSSS-CCTTCEECBSSSSBCCCS--HHHHHHHHHSCTTCEEEE
T ss_pred             CccEEEEecCCCCHHHcC-CCcceEEEEECCEecccH--HHHHHHHHcCCCCCEEEE
Confidence            589999999999999999 999999999999999875  57777776554 444443

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=98.30  E-value=2.4e-07  Score=63.66  Aligned_cols=52  Identities=21%  Similarity=0.244  Sum_probs=43.2

Q ss_pred             CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC-CCcee
Q psy8436         250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF-PQSSK  304 (306)
Q Consensus       250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~-~~~~~  304 (306)
                      .|+.|..+.++++|+++| |++||.|++|||.++.+.  .++..+++... +..+.
T Consensus        19 ~G~~v~~v~~~s~~~~aG-l~~GDiI~~ing~~v~~~--~~~~~~~~~~~~~~~~~   71 (87)
T d2i6va1          19 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMS   71 (87)
T ss_dssp             EEEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEE
T ss_pred             EEEEEecCCCCCHHHHCC-CCCCCEEEEECCEEeecH--HHHHHHHHhhccccccE
Confidence            588899999999999998 999999999999999764  67888887653 44443